Psyllid ID: psy14886
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VN14 | 1390 | Contactin OS=Drosophila m | yes | N/A | 0.938 | 0.341 | 0.559 | 1e-153 | |
| Q8IWV2 | 1026 | Contactin-4 OS=Homo sapie | yes | N/A | 0.920 | 0.453 | 0.338 | 4e-69 | |
| Q90W79 | 1027 | Contactin-5 OS=Gallus gal | yes | N/A | 0.924 | 0.454 | 0.339 | 3e-68 | |
| Q69Z26 | 1026 | Contactin-4 OS=Mus muscul | yes | N/A | 0.910 | 0.448 | 0.338 | 6e-68 | |
| Q62845 | 1026 | Contactin-4 OS=Rattus nor | yes | N/A | 0.910 | 0.448 | 0.340 | 1e-67 | |
| P97528 | 1028 | Contactin-6 OS=Rattus nor | no | N/A | 0.910 | 0.447 | 0.334 | 8e-67 | |
| Q9UQ52 | 1028 | Contactin-6 OS=Homo sapie | no | N/A | 0.910 | 0.447 | 0.330 | 2e-66 | |
| Q62682 | 1028 | Contactin-3 OS=Rattus nor | no | N/A | 0.942 | 0.463 | 0.330 | 2e-66 | |
| Q9JMB8 | 1028 | Contactin-6 OS=Mus muscul | no | N/A | 0.910 | 0.447 | 0.328 | 8e-66 | |
| Q12860 | 1018 | Contactin-1 OS=Homo sapie | no | N/A | 0.908 | 0.450 | 0.341 | 9e-65 |
| >sp|Q9VN14|CONT_DROME Contactin OS=Drosophila melanogaster GN=Cont PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/481 (55%), Positives = 343/481 (71%), Gaps = 7/481 (1%)
Query: 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
D +D+T+ CEAF +PD Y+W++N E L+ + ++DRY IQDNVLTI++L ++D
Sbjct: 673 DYNSDVTFICEAFAIPDANYTWYKNAERLDPANI---NRDRYIIQDNVLTIKFLEKDKDD 729
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
AMYQC A+NQLKT +SSAQLRVL++KPSFKK PLESE YA GN TI C+PEAAP+PKF
Sbjct: 730 AMYQCGAQNQLKTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTTIVCDPEAAPRPKF 789
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
WKKDG +IGSGG R+I +G L ISP SRDD GIY+C A+N G DES R+IVL
Sbjct: 790 QWKKDGQVIGSGGHRRILPSGTLTISPTSRDDEGIYTCIASNQAGTDESHARVIVLQEIR 849
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
+ E P +I H + L C A +ELLD+AY+W HNG + N N T I +D
Sbjct: 850 FIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKN---NHDGTGRIIVDWN 906
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD 301
L + N S DAG+YECVVKS V +IS+KT+V +EG PG PGGVQV+++ KT A I+W D
Sbjct: 907 RLTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQISKTKAIIEWVD 966
Query: 302 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 361
G+ NGR I +Y I+ RTNWN TW NVS HV +EVDRYT R++A + N L PWS YEF V
Sbjct: 967 GSHNGRAIRYYNILGRTNWNRTWVNVSTHVQAREVDRYTSRQQAEVVN-LTPWSAYEFSV 1025
Query: 362 IAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 421
A N+LG G PS+PSP Y+T DKPY AP +GGGGGKIGDL+I+W+PL ++Q++ I+
Sbjct: 1026 TAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIH 1085
Query: 422 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
YK+FW+ K E+ S+ +K+ ++G+AVV IP YYTEYEVKVQAIN VG GPESE+
Sbjct: 1086 YKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLNNYYTEYEVKVQAINSVGKGPESEIAV 1145
Query: 482 I 482
I
Sbjct: 1146 I 1146
|
Required for organization of septate junctions and paracellular barrier functions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8IWV2|CNTN4_HUMAN Contactin-4 OS=Homo sapiens GN=CNTN4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 240/481 (49%), Gaps = 16/481 (3%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ ++ W C+A G P TY W +NGE PL +DR I+ L I +N D M
Sbjct: 330 EENVFWECKANGRPKPTYKWLKNGE-------PLLTRDRIQIEQGTLNITIVNLS-DAGM 381
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
YQC A+N+ +S+A+L V+ + P F + L+ T GG V I C P+A+PKP + W
Sbjct: 382 YQCLAENKHGVIFSNAELSVIAVGPDFSRTLLKRVTLVKVGGEVVIECKPKASPKPVYTW 441
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
KK +I+ R I E+GNL I V++ D+G Y+C ATN G S G L+V P+
Sbjct: 442 KKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVV-KDPTRV 500
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGL 242
P + + ++ L C + LD+ + W+ NG I + D + E G
Sbjct: 501 MVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLIDFDRDGDHFERVGGQDSAGD 560
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDG 302
L I N AG+Y C+V+++V ++S +IV GPPG P V + E+ T+A + W G
Sbjct: 561 LMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPG 620
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
N PIT Y I ART ++ W VS + + +D G+ + L PW YEF+ +
Sbjct: 621 PDNHSPITMYVIQARTPFSVGWQAVS--TVPELID---GKTFTATVVGLNPWVEYEFRTV 675
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 422
A N +G GEPS PS + T P P+ + GGGG +L I+WE +P E QN Y
Sbjct: 676 AANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGY 735
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ +R + L + V R S ++ +EVKV N+ G GP S +
Sbjct: 736 VVAFRPYGKMIWMLTVLAS-ADASRYVFRNESVHPFSPFEVKVGVFNNKGEGPFSPTTVV 794
Query: 483 W 483
+
Sbjct: 795 Y 795
|
Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q90W79|CNTN5_CHICK Contactin-5 OS=Gallus gallus GN=CNTN5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 237/483 (49%), Gaps = 16/483 (3%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D+ L W C+A G P TY W +NG +PL Q R + ++VL IR +N D
Sbjct: 328 LDSGEQLRWECKATGKPRPTYRWLKNG-------VPLWPQSRIEMINSVLMIRTVNIS-D 379
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+N+ T Y+SA+L++L P+F + +G V I C P+A+PKP
Sbjct: 380 AGMYQCLAENKYGTIYASAELKILASAPTFPLNQMRKTIIITKGQEVVIECKPQASPKPT 439
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
WKK + R I G+L I S+ D G YSC NV G E + V P
Sbjct: 440 ITWKKGDKALRESKRVTILPQGSLRILNASKSDEGRYSCRGVNVFGSAEIVASVSVKE-P 498
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINID 239
+ E P KI + ++ L C A + LDV + WT NG I + + E+
Sbjct: 499 TRIELTPKKIELTVGESIVLSCKALHDSTLDVTFYWTLNGQPIDFDKEDGHFESIKAQAS 558
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
L I N AG Y C V++ +S +T ++V GPPG PG V V E+ T+AT+ W
Sbjct: 559 SADLMIRNILLMHAGRYGCRVQTAADAVSDETELLVRGPPGPPGVVIVEEITDTTATLSW 618
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
+ GA N PI+ Y + AR+ ++ W + D +G E+++ L PW YEF
Sbjct: 619 SPGADNHSPISLYNLQARSPFSLGW-----QTVKTVPDVISGDMESAMAVELNPWVEYEF 673
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
+V+A N++G G+PS+PS T P P+ + G G+ +L I+WEP+ E QN
Sbjct: 674 RVVATNKIGTGDPSAPSRMIRTNEAVPKTPPANVSGRSGRRHELVIAWEPVSEEFQNGEG 733
Query: 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
Y + +R N T E + + + R S T +EVKV N+ G GP S +
Sbjct: 734 FGYIVAFR-PNGTRGWKEKMVTSSDASKFIYRDESVPPLTPFEVKVGVYNNKGDGPFSPI 792
Query: 480 VTI 482
V I
Sbjct: 793 VVI 795
|
Contactins mediate cell surface interactions during nervous system development. May contribute to the formation of somatotopic maps of cerebellar afferents during the development of the nervous system. Gallus gallus (taxid: 9031) |
| >sp|Q69Z26|CNTN4_MOUSE Contactin-4 OS=Mus musculus GN=Cntn4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 231/476 (48%), Gaps = 16/476 (3%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
W C+A G P TY W +NG+ PL +DR I+ L I +N D MYQC A
Sbjct: 335 WECKANGRPKPTYRWLKNGD-------PLLTRDRIQIEQGTLNITIVNLS-DAGMYQCVA 386
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128
+N+ +SSA+L V+ P F + L+ T GG V I C P+A+P+P + W+K
Sbjct: 387 ENKHGVIFSSAELSVIAESPDFSRTLLKRVTLVKVGGEVVIECKPKASPRPVYTWRKGRE 446
Query: 129 IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
I+ R I E+GNL I V++ D+G Y+C ATN G S G +IV P+ P
Sbjct: 447 ILRENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNVIV-KDPTKVMVPPS 505
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEITN 247
+ + ++ L C + LD+ + WT NG I + D + E G L I N
Sbjct: 506 SMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRN 565
Query: 248 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR 307
AG+Y C+V+++V K+S +IV GPPG P V + E+ T+A + W G N
Sbjct: 566 IQLKHAGKYVCMVQTSVDKLSVAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHS 625
Query: 308 PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL 367
PIT Y I ART ++ W + D G+ + L PW YEF+ +A N +
Sbjct: 626 PITMYVIQARTPFSVGW-----QAVNTVPDLVDGKTFTATVVGLNPWVEYEFRTVAANVI 680
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G GEPS PS + T P P+ + GGGG +L I+WE +P E QN Y + +R
Sbjct: 681 GIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFR 740
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ L + V R S ++ +EVKV N+ G GP S ++
Sbjct: 741 PHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFEVKVGVFNNKGEGPFSPTTLVY 795
|
Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis. Mus musculus (taxid: 10090) |
| >sp|Q62845|CNTN4_RAT Contactin-4 OS=Rattus norvegicus GN=Cntn4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/476 (34%), Positives = 235/476 (49%), Gaps = 16/476 (3%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
W C+A G P TY W +NG+ PL ++R I+ L I +N D MYQC A
Sbjct: 335 WECKANGRPKPTYRWLKNGD-------PLLTRERIQIEQGTLNITIVNLS-DAGMYQCVA 386
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128
+N+ Y+SA+L V+ P F + L+ T GG V I C P+A+P+P + W+K
Sbjct: 387 ENKHGVIYASAELSVIAESPDFSRTLLKRVTLVKVGGEVVIECKPKASPRPVYTWRKGRE 446
Query: 129 IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
I+ R I E+GNL I V++ D+G Y+C ATN G S G +V+ P+ P
Sbjct: 447 ILRENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGN-VVVKDPTKVMVPPS 505
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEITN 247
+ + ++ L C + LD+ + WT NG I + D + E G L I N
Sbjct: 506 SMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRN 565
Query: 248 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR 307
AG+Y C+V+++V K+S +IV GPPG P V + E+ T+A + W G N
Sbjct: 566 IQLKHAGKYVCMVQTSVDKLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHS 625
Query: 308 PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL 367
PIT Y I ART ++ W VS + + VD G+ + L PW YEF+ +A N +
Sbjct: 626 PITMYVIQARTPFSVGWQAVS--TVPELVD---GKTFTATVVGLNPWVEYEFRTVAANVI 680
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G GEPS PS + T P P+ + GGGG +L I+WE +P E QN Y + +R
Sbjct: 681 GIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFR 740
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ L + V R S ++ +EVKV N+ G GP S ++
Sbjct: 741 PHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFEVKVGVFNNKGEGPFSPTTLVY 795
|
Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|P97528|CNTN6_RAT Contactin-6 OS=Rattus norvegicus GN=Cntn6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 238/481 (49%), Gaps = 21/481 (4%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L W C+A G P+ +Y+W +NGE LN+E +R ++ L I LN D +YQ
Sbjct: 334 SLFWECKASGNPNPSYTWLKNGERLNTE-------ERIQTENGTLIITMLNVS-DSGIYQ 385
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N+ +T Y++A+LRVL P F K P++ + GG+++I C P A PK WK+
Sbjct: 386 CAAENKYQTIYANAELRVLASAPDFSKNPIKKISVVQVGGDISIECKPNAFPKASISWKR 445
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 185
+ R E+G+L I V+R D+G Y+C ATN G +S G LIV +
Sbjct: 446 GTENLKQSKRVFFLEDGSLKICNVTRSDAGSYTCVATNQFGNGKSSGSLIVKER-TVITV 504
Query: 186 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GL 242
P K+ + ++ L C + ++V ++W NG I DL + I G G
Sbjct: 505 PPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDVI---DLKKGVAHFERIGGESVGD 561
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDG 302
L I N +G+Y C V++T+ ++S +IV GPPG P V+V + T++ + W G
Sbjct: 562 LMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGPPEDVKVEHISSTTSQLSWRPG 621
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
N PI + I RT ++ W + + G+ + L PW YEF+V+
Sbjct: 622 PDNNSPIQIFTIQTRTPFSVGW-----QAVATVPEILNGQTYNATVIGLSPWVEYEFRVV 676
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 422
AGN +G GEPS PS T A P AP I GGGG +L I+WEP+P E QN Y
Sbjct: 677 AGNNIGIGEPSKPSELLRTKASIPNVAPVNINGGGGSRSELVITWEPIPEELQNGEGFGY 736
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
I +R T + E + + + R S + +EVKV N+ G G S V +
Sbjct: 737 IIMFRPVGSTTWMKEKVALVESSKF-IYRNESIMPLSPFEVKVGVYNNEGEGSLSTVSIV 795
Query: 483 W 483
+
Sbjct: 796 Y 796
|
Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. May be involved in motor coordination. Rattus norvegicus (taxid: 10116) |
| >sp|Q9UQ52|CNTN6_HUMAN Contactin-6 OS=Homo sapiens GN=CNTN6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 238/481 (49%), Gaps = 21/481 (4%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L W C+A G P+ Y+W +NGE LN E +R I++ L I LN D +YQ
Sbjct: 334 NLLWECKASGKPNPWYTWLKNGERLNPE-------ERIQIENGTLIITMLNVS-DSGVYQ 385
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N+ + Y++A+LRVL P F K P++ +++ GG++ I C P A P+ WK+
Sbjct: 386 CAAENKYQIIYANAELRVLASAPDFSKSPVKKKSFVQVGGDIVIGCKPNAFPRAAISWKR 445
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 185
+ R + E+G+L I ++R D+G Y+C ATN G ++ G LIV +
Sbjct: 446 GTETLRQSKRIFLLEDGSLKIYNITRSDAGSYTCIATNQFGTAKNTGSLIVKER-TVITV 504
Query: 186 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GL 242
P K+ + ++ L C + ++V ++W NG I DL + I G G
Sbjct: 505 PPSKMDVTVGESIVLPCQVSHDPSIEVVFVWFFNGDVI---DLKKGVAHFERIGGESVGD 561
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDG 302
L I N +G+Y C V++T+ +S +IV GPPG P VQV ++ T++ + W G
Sbjct: 562 LMIRNIQLHHSGKYLCTVQTTLESLSAVADIIVRGPPGPPEDVQVEDISSTTSQLSWRAG 621
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
N PI + I RT ++ W + + G+ + L PW YEF+V+
Sbjct: 622 PDNNSPIQIFTIQTRTPFSVGW-----QAVATVPEILNGKTYNATVVGLSPWVEYEFRVV 676
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 422
AGN +G GEPS PS T A P AP I GGGG +L I+WE +P E QN Y
Sbjct: 677 AGNSIGIGEPSEPSELLRTKASVPVVAPVNIHGGGGSRSELVITWESIPEELQNGEGFGY 736
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
I +R T + E + + V R S + +EVKV N+ G G S V +
Sbjct: 737 IIMFRPVGSTTWSKEKVSSVESSRF-VYRNESIIPLSPFEVKVGVYNNEGEGSLSTVTIV 795
Query: 483 W 483
+
Sbjct: 796 Y 796
|
Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. Involved in motor coordination. Homo sapiens (taxid: 9606) |
| >sp|Q62682|CNTN3_RAT Contactin-3 OS=Rattus norvegicus GN=Cntn3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 164/496 (33%), Positives = 246/496 (49%), Gaps = 20/496 (4%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
L W C A G P +Y W +NG+ L E +R I++ LTI LN D M+QC
Sbjct: 335 LYWECRASGKPKPSYRWLKNGDALVLE-------ERIQIENGALTIANLNVS-DSGMFQC 386
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A+N+ YSSA+L+VL P F + P++ G V + C P A+P+ WKK
Sbjct: 387 IAENKHGLIYSSAELKVLASAPDFSRNPMKKMIQVQVGSLVILDCKPSASPRALSFWKKG 446
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL 186
++ R + +G L I V++ D+GIY+C A N G +L+V P+
Sbjct: 447 DTVVREQARISLLNDGGLKIMNVTKADAGIYTCIAENQFGKANGTTQLVVTE-PTRIILA 505
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEI 245
P + +A ++ L C + LLD+ + W NG D + E + G L+ I
Sbjct: 506 PSNMDVAVGESIILPCQVQHDPLLDIMFAWYFNGTLTDFKKDGSHFEKVGGSSSGDLM-I 564
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN 305
N +G+Y C+V++ V +S+ +IV G PG P V+V E+ T+A + WT+G +
Sbjct: 565 RNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPPENVKVDEITDTTAQLSWTEGTDS 624
Query: 306 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 365
P+ Y + ART ++ W NV + + +D T R +E L PW YEF+V+A N
Sbjct: 625 HSPVISYAVQARTPFSVGWQNV--RTVPEAIDGKT-RTATVVE--LNPWVEYEFRVVASN 679
Query: 366 ELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIF 425
++G GEPS PS + T P APS + GGGG +L I+W+P+P E QN Y +
Sbjct: 680 KIGGGEPSLPSEKVRTEEAAPEVAPSEVSGGGGSRSELVITWDPVPEELQNGGGFGYVVA 739
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW-- 483
+R T + + N V R S ++ YEVKV N+ G GP S V T++
Sbjct: 740 FRPLGVTTWIQTVVTSPDNPRY-VFRNESIVPFSPYEVKVGVYNNKGEGPFSPVTTVFSA 798
Query: 484 -HDPLVIISYVCQGDL 498
+P V S++ L
Sbjct: 799 EEEPTVAPSHISAHSL 814
|
Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q9JMB8|CNTN6_MOUSE Contactin-6 OS=Mus musculus GN=Cntn6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 238/481 (49%), Gaps = 21/481 (4%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L W C+A G P+ +Y+W +NG+ LN+E +R I++ L I LN D +YQ
Sbjct: 334 SLFWECKASGNPNPSYTWLKNGQRLNTE-------ERIQIENGTLIITMLNIS-DSGIYQ 385
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N+ +T Y++A+LRVL P F K P++ + GG+++I C P A PK WK+
Sbjct: 386 CAAENKYQTIYANAELRVLASAPDFSKNPIKKISVVQVGGDISIECKPNAFPKASISWKR 445
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 185
+ R E+G+L I V+R D+G Y+C ATN G +S G L+V +
Sbjct: 446 GTENLKQSKRVLFLEDGSLKICNVTRADAGSYTCVATNQFGNGKSSGGLVVKER-TIITV 504
Query: 186 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG---GL 242
P K+ + ++ L C + ++V ++W NG I DL + I G G
Sbjct: 505 PPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDII---DLKKGVAHFERIGGESVGD 561
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDG 302
L I N +G+Y C V++T+ ++S +IV GPPG P V+V + T++ + W G
Sbjct: 562 LMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGPPEDVKVEHISSTTSQLSWRPG 621
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
N PI + I RT ++ W + + G+ + L PW YEF+V+
Sbjct: 622 PDNNSPIQIFTIQTRTPFSVGW-----QAVATVPEILNGQTYNATVVGLSPWVEYEFRVV 676
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 422
AGN +G GEPS PS T A P AP I GGGG +L I+WE +P E QN Y
Sbjct: 677 AGNNIGIGEPSKPSELLRTKASVPNVAPGNINGGGGSRSELVITWEAIPEELQNGEGFGY 736
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ +R T + E + + + R S + +EVKV N+ G G S V +
Sbjct: 737 IVMFRPVGTTAWMKERVALVESSKF-IYRNESIMPLSPFEVKVGVYNNEGEGSLSTVTIV 795
Query: 483 W 483
+
Sbjct: 796 Y 796
|
Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus (By similarity). Involved in motor coordination. Mus musculus (taxid: 10090) |
| >sp|Q12860|CNTN1_HUMAN Contactin-1 OS=Homo sapiens GN=CNTN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 246/483 (50%), Gaps = 24/483 (4%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D +DL W C A G P T W +NG + L L D + + N
Sbjct: 342 VDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYD------------VTFENA--- 386
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+N Y++A+L++L L P+F+ P++ + A +GG V I C P+AAPKPK
Sbjct: 387 -GMYQCIAENTYGAIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPK 445
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
F W K + + R I+E+G+L I+ ++R+D GIY+C A N G S G L++ P
Sbjct: 446 FSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITD-P 504
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ P I N ++C+A + LD+ ++W+ NG I N N +D
Sbjct: 505 TRIILAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDS 564
Query: 241 -GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
G L I NA AG Y C ++ V S ++V GPPG PGG+++ ++ TS + W
Sbjct: 565 NGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTW 624
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
+ G+ N PI+ Y I +T + W + E G EA+ L+PW YEF
Sbjct: 625 SRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIE-----GNMEAARAVDLIPWMEYEF 679
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
+V+A N LG GEPS PS + T P APS +GGGGG+ +L+I+W PL RE N
Sbjct: 680 RVVATNTLGRGEPSIPSNRIKTDGAAPNVAPSDVGGGGGRNRELTITWAPLSREYHYGNN 739
Query: 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
Y + ++ + E++ T+ + G V + + T ++VKV+A N+ G GP S V
Sbjct: 740 FGYIVAFKPFDGEEWKKVTVTN-PDTGRYVHKDETMSPSTAFQVKVKAFNNKGDGPYSLV 798
Query: 480 VTI 482
I
Sbjct: 799 AVI 801
|
Contactins mediate cell surface interactions during nervous system development. Involved in the formation of paranodal axo-glial junctions in myelinated peripheral nerves and in the signaling between axons and myelinating glial cells via its association with CNTNAP1. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. Interaction with TNR induces a repulsion of neurons and an inhibition of neurite outgrowth. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| 383850888 | 1650 | PREDICTED: contactin-like [Megachile rot | 0.952 | 0.291 | 0.690 | 0.0 | |
| 340724306 | 1642 | PREDICTED: contactin-like [Bombus terres | 0.952 | 0.292 | 0.678 | 0.0 | |
| 350420740 | 1813 | PREDICTED: contactin-like [Bombus impati | 0.952 | 0.265 | 0.676 | 0.0 | |
| 332023779 | 1220 | Contactin [Acromyrmex echinatior] | 0.948 | 0.392 | 0.652 | 0.0 | |
| 328787872 | 1641 | PREDICTED: contactin-like [Apis mellifer | 0.952 | 0.293 | 0.677 | 0.0 | |
| 380021534 | 1641 | PREDICTED: contactin-like [Apis florea] | 0.952 | 0.293 | 0.673 | 0.0 | |
| 307183641 | 1156 | Contactin [Camponotus floridanus] | 0.952 | 0.416 | 0.677 | 0.0 | |
| 307210402 | 1647 | Contactin [Harpegnathos saltator] | 0.950 | 0.291 | 0.650 | 1e-180 | |
| 242009529 | 1266 | Contactin precursor, putative [Pediculus | 0.950 | 0.379 | 0.657 | 1e-178 | |
| 270015155 | 1180 | hypothetical protein TcasGA2_TC013632 [T | 0.938 | 0.401 | 0.607 | 1e-161 |
| >gi|383850888|ref|XP_003701006.1| PREDICTED: contactin-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/484 (69%), Positives = 398/484 (82%), Gaps = 3/484 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ +LTWTCEAFG+PDVTYSWFRNGELLN +TLP+ED++RYFIQDNVLTI+ L+PERD
Sbjct: 504 MDNRGELTWTCEAFGIPDVTYSWFRNGELLNVDTLPIEDRERYFIQDNVLTIKNLDPERD 563
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQCRA+NQLKT+YSSAQLRVL+LKPSFKKRP+E ETYA E GNVTIFCNPEAAPKPK
Sbjct: 564 QAMYQCRARNQLKTKYSSAQLRVLSLKPSFKKRPMEPETYAAERGNVTIFCNPEAAPKPK 623
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKKDGNIIGSGGRR+I E GNL+ISPVS DD G Y C+ATN +G DE++GRLIVL P
Sbjct: 624 FVWKKDGNIIGSGGRRRILEGGNLIISPVSSDDEGTYVCSATNQYGSDETRGRLIVLRRP 683
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ E+LP +IT A +N LRC +E+LDVAYIW HNG+RI + DL P + IDG
Sbjct: 684 YFLEKLPQRITTAVMQNQTLRCIGEVDEMLDVAYIWKHNGLRIRDEDL--ASNPRLRIDG 741
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
G L I NA+FA+AG+YEC++KS VG+IS+ TTV++EGPPG PGGVQVV + KTS T++WT
Sbjct: 742 GELNIINATFAEAGDYECIIKSAVGEISSTTTVMIEGPPGPPGGVQVVNIVKTSTTLRWT 801
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA NGRPIT Y + ARTNWN TWFNV E++ EVDRY GRKEA +ENVL P++TYEF
Sbjct: 802 DGAFNGRPITMYTVSARTNWNHTWFNVIENITAIEVDRYNGRKEAYLENVLNPYTTYEFC 861
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
V A NELGY PS+PSPQY+TP+DKPY+ PS IGGGGGKIGDL+I+W PLP +QN P I
Sbjct: 862 VSAFNELGYSVPSAPSPQYSTPSDKPYKIPSNIGGGGGKIGDLTIAWNPLPPSEQNGPGI 921
Query: 421 YYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYK+FWR+K ++ EFQS +LK GN+G +VV I ++YYTEYEVKVQAIN +G GP S
Sbjct: 922 YYKVFWRRKYHEKEFQSLSLKGQGNIGRSVVAIQPQYYYTEYEVKVQAINSLGSGPVSNE 981
Query: 480 VTIW 483
VTI+
Sbjct: 982 VTIF 985
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724306|ref|XP_003400523.1| PREDICTED: contactin-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/485 (67%), Positives = 400/485 (82%), Gaps = 4/485 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ +LTWTCEAFG+PDV+YSWFRNGE+LN ETLP +D+DRY IQDNVL+I+YL+PERD
Sbjct: 503 MDNRGELTWTCEAFGIPDVSYSWFRNGEILNMETLPSQDRDRYSIQDNVLSIKYLDPERD 562
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQCRA+NQLKT+YSSAQLR+L+LKPSFKKRP+E ETYA E GNVTIFCNPEAAP+PK
Sbjct: 563 QAMYQCRARNQLKTKYSSAQLRILSLKPSFKKRPMEPETYAAEKGNVTIFCNPEAAPRPK 622
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKKDGN+IGSGGRRKI E GNL+ISPVSRDD G Y CTATN +G D+++GRLIVL GP
Sbjct: 623 FVWKKDGNVIGSGGRRKILETGNLIISPVSRDDEGTYICTATNQYGSDDTRGRLIVLRGP 682
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
+ E+LP +T A +N LRC +E+LDVAYIW HNG+RI + DL + P ++ID
Sbjct: 683 QFIEKLPQHVTSAVMQNQTLRCMGEVVDEMLDVAYIWKHNGLRIRDEDL--INNPRLHID 740
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
G L I NA+FA+AGEY+C++KS VG+IS+KTTV +EGPPG PGGVQVV + KTS T++W
Sbjct: 741 GEELNIINATFAEAGEYQCIIKSAVGEISSKTTVTIEGPPGPPGGVQVVNIVKTSTTLRW 800
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
TDGA NG+PIT Y + ARTNWN TW N+ E++ EVDRY GRKEA +ENVL P++TYEF
Sbjct: 801 TDGAFNGKPITMYTVSARTNWNHTWSNIIENITAVEVDRYNGRKEAYLENVLNPYTTYEF 860
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
V A NELGY PSSPSPQY+TP+DKP + PS IGGGGGKIGDL+I+W+PLP +QN P
Sbjct: 861 CVSAFNELGYSLPSSPSPQYSTPSDKPTKVPSNIGGGGGKIGDLTITWDPLPSSEQNGPG 920
Query: 420 IYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
IYYK+FWR+K ++TEFQS +LK+YGN G +VV+I ++YYTEYEVKVQA N +G GP S
Sbjct: 921 IYYKVFWRQKYHETEFQSLSLKDYGNAGRSVVQIQQQYYYTEYEVKVQAANALGFGPISN 980
Query: 479 VVTIW 483
VTI+
Sbjct: 981 AVTIF 985
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350420740|ref|XP_003492608.1| PREDICTED: contactin-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/485 (67%), Positives = 399/485 (82%), Gaps = 4/485 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ +LTWTCEAFG+PDV+YSWFRNGE+LN ETLP +D+DRY IQDNVL+I+YL+PERD
Sbjct: 503 MDNRGELTWTCEAFGIPDVSYSWFRNGEMLNMETLPSQDRDRYSIQDNVLSIKYLDPERD 562
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQCRA+NQLKT+YSSAQLR+L+LKPSFKKRP+E ETYA E GNVTIFCNPEAAP+PK
Sbjct: 563 QAMYQCRARNQLKTKYSSAQLRILSLKPSFKKRPMEPETYAAEKGNVTIFCNPEAAPRPK 622
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y CTATN +G D+++GRLIVL GP
Sbjct: 623 FVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYICTATNQYGSDDTRGRLIVLRGP 682
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
+ E+LP +T A +N LRC +E+LDVAYIW HNG+RI + DL + P ++ID
Sbjct: 683 QFIEKLPQHVTSAVMQNQTLRCMGEVVDEMLDVAYIWKHNGLRIRDEDL--INNPRLHID 740
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
G L I NA+FA+AGEY+C++KS VG+IS+KTTV +EGPPG PGGVQVV + KTS T++W
Sbjct: 741 GEELNIINATFAEAGEYQCIIKSAVGEISSKTTVTIEGPPGPPGGVQVVNIVKTSTTLRW 800
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
TDGA NG+PIT Y + ARTNWN TW N+ E++ EVDRY GRKEA +ENVL P++TYEF
Sbjct: 801 TDGAFNGKPITMYTVSARTNWNHTWSNIIENITAVEVDRYNGRKEAYLENVLNPYTTYEF 860
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
V A NELGY PSSPSPQY+TP DKP + PS IGGGGGKIGDL+I+W+PLP +QN P
Sbjct: 861 CVSAFNELGYSLPSSPSPQYSTPPDKPTKVPSNIGGGGGKIGDLTITWDPLPSSEQNGPG 920
Query: 420 IYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
IYYK+FWR+K ++TEFQS +LK+YGN G +VV+I ++YYTEYEVKVQA N +G GP S
Sbjct: 921 IYYKVFWRQKYHETEFQSLSLKDYGNAGRSVVQIQQQYYYTEYEVKVQAANALGFGPISN 980
Query: 479 VVTIW 483
VTI+
Sbjct: 981 AVTIF 985
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023779|gb|EGI64003.1| Contactin [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/484 (65%), Positives = 393/484 (81%), Gaps = 5/484 (1%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MD+ ADLTWTCEAFG+PDVTYSWF+NG+LL+S L LE++DRY IQDNVL I +++ E+D
Sbjct: 501 MDDHADLTWTCEAFGIPDVTYSWFKNGKLLDS--LSLEERDRYTIQDNVLNIHHVDSEKD 558
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+NQL+T YSSAQLRVL+LKPSFKKRP+ESETYA EGGNVTI CNPEAAP+PK
Sbjct: 559 QGMYQCCARNQLRTTYSSAQLRVLSLKPSFKKRPMESETYAAEGGNVTIMCNPEAAPRPK 618
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
F+WKKDGNIIGSGGRR+I E GNL+ISPVSRDD G Y CTATN +G DE++GRLIVL GP
Sbjct: 619 FIWKKDGNIIGSGGRRRILETGNLIISPVSRDDEGTYVCTATNQYGNDETRGRLIVLRGP 678
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ ++LP +I + + NL L C H +E+LD+AYIWTHNG+RI + DL P +NIDG
Sbjct: 679 QFVQRLPSQIILYYNNNLTLHCLGHIDEMLDIAYIWTHNGMRIRDKDLQ--NNPRLNIDG 736
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
L I NA+F +AGEYEC++KS VG IS+K +IV+GPPG PGGVQV+ + KTSAT++W+
Sbjct: 737 EYLNIINATFTEAGEYECILKSAVGAISSKLNLIVQGPPGPPGGVQVMNIFKTSATLRWS 796
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA NG+PIT Y I ART+WN TWF++ E++ E DRY GRKEA++ENVL P+STYEF+
Sbjct: 797 DGAMNGKPITMYTISARTDWNQTWFSLVENITAFEADRYNGRKEANLENVLNPYSTYEFR 856
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
V+A NE GYG PS PSP+Y+TP+DKP +APS I GGGGKIGDL+I+W+PL QN P +
Sbjct: 857 VLAFNEFGYGPPSLPSPRYSTPSDKPAKAPSNISGGGGKIGDLTITWDPLNPSDQNGPGV 916
Query: 421 YYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYKIFWR+K + EFQS +L+EYGN+G +VV IP ++YYTEYEVKVQAIN +G GP S +
Sbjct: 917 YYKIFWRRKGYEKEFQSLSLQEYGNIGSSVVPIPQQYYYTEYEVKVQAINAMGEGPVSNI 976
Query: 480 VTIW 483
T++
Sbjct: 977 ETVY 980
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787872|ref|XP_003251020.1| PREDICTED: contactin-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/484 (67%), Positives = 392/484 (80%), Gaps = 3/484 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ +LTWTCEAFG+PDVTYSWFRNGE+LN ETL ED+DRY IQDNVL+I+ L+PERD
Sbjct: 503 MDNRGELTWTCEAFGIPDVTYSWFRNGEILNMETLSSEDKDRYSIQDNVLSIKNLDPERD 562
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQCRAKNQLKTRYSSAQLR+L+LKPSFKKRP+E ETYA E GN+TI CNPEAAP+PK
Sbjct: 563 QAMYQCRAKNQLKTRYSSAQLRILSLKPSFKKRPMEPETYAAEKGNITIICNPEAAPRPK 622
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y CTATN +G DE++GRLIVL GP
Sbjct: 623 FVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYICTATNQYGNDETRGRLIVLRGP 682
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ E+LP +IT A +N LRC +E+LDVAYIW HNG+RI + DL + P +NI+G
Sbjct: 683 QFMEKLPQQITTAVMQNQTLRCIGEIDEMLDVAYIWKHNGLRIRDEDL--INNPRLNING 740
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
L I NA+FA+AGEYEC++KS V +IS+KT V +EGPPG PGGVQV + KTS T++WT
Sbjct: 741 EELNIINATFAEAGEYECIIKSAVSEISSKTIVTIEGPPGPPGGVQVKNIVKTSTTLRWT 800
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA NG+PIT Y I ARTNWN TWF + E++ EVDRY GRKEA +ENVL P++TYEF+
Sbjct: 801 DGAFNGKPITMYSISARTNWNHTWFIIIENITAIEVDRYNGRKEAYLENVLNPYTTYEFR 860
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
V A NELGY PSSPSPQY+T DKP + P IGGGGGKIGDL+I+W PLP +QN P I
Sbjct: 861 VSAFNELGYSLPSSPSPQYSTSPDKPMKVPFNIGGGGGKIGDLTITWNPLPPSEQNGPGI 920
Query: 421 YYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYK+FWR+K ++TEFQS +LK YGNVG +VV I ++YYTEYEVKVQA+N +G GP S
Sbjct: 921 YYKVFWRRKYHETEFQSLSLKNYGNVGRSVVPIQQQYYYTEYEVKVQAVNALGSGPISNA 980
Query: 480 VTIW 483
VTI+
Sbjct: 981 VTIF 984
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380021534|ref|XP_003694618.1| PREDICTED: contactin-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/484 (67%), Positives = 393/484 (81%), Gaps = 3/484 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ +LTWTCEAFG+PDVTYSWFRNGE+LN ETL ED+ RY IQDNVL+I+ L+PERD
Sbjct: 503 MDNRGELTWTCEAFGIPDVTYSWFRNGEILNMETLSSEDKGRYSIQDNVLSIKNLDPERD 562
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQCRA+NQLKTRYSSAQLR+L+LKPSFKKRP+E ETYA E GN+TI CNPEAAP+PK
Sbjct: 563 QAMYQCRARNQLKTRYSSAQLRILSLKPSFKKRPMEPETYAAEKGNITIICNPEAAPRPK 622
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y CTATN +G DE++GRLIVL GP
Sbjct: 623 FVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYICTATNQYGNDETRGRLIVLRGP 682
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ E+LP +IT A +N LRC+ +E+LDVAYIW HNG+RI + DL + P +NI+G
Sbjct: 683 QFMEKLPQQITTAVMQNQTLRCTGEIDEMLDVAYIWKHNGLRIRDEDL--INNPRLNING 740
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
L I NA+FA+AGEYEC++KS V +IS+KT V +EGPPG PGGVQV + KTS T++WT
Sbjct: 741 EELNIINATFAEAGEYECIIKSAVSEISSKTVVTIEGPPGPPGGVQVKNIVKTSTTLRWT 800
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA NG+PIT Y I ARTNWN TWF + E++ EVDRY GRKEA +ENVL P++TYEF+
Sbjct: 801 DGAFNGKPITMYSISARTNWNHTWFTIIENITAIEVDRYNGRKEAYLENVLNPYTTYEFR 860
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
V A NELGY PSSPSPQY+T +DKP + P IGGGGGKIGDL+I+W PLP +QN P I
Sbjct: 861 VSAFNELGYSLPSSPSPQYSTSSDKPMKVPFNIGGGGGKIGDLTITWNPLPPSEQNGPGI 920
Query: 421 YYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYK+FWR+K ++TEFQS +LK YGNVG +VV I ++YYTEYEVKVQA+N +G GP S
Sbjct: 921 YYKVFWRRKYHETEFQSLSLKNYGNVGRSVVPIQQQYYYTEYEVKVQAVNALGSGPISNA 980
Query: 480 VTIW 483
VTI+
Sbjct: 981 VTIF 984
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307183641|gb|EFN70344.1| Contactin [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/484 (67%), Positives = 399/484 (82%), Gaps = 3/484 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ DLTWTCEAFG+PDVTY+WFRNGE+L+ TLP ED+DRY IQDNV+ I+YL+PERD
Sbjct: 435 MDNRGDLTWTCEAFGIPDVTYNWFRNGEILDMYTLPPEDRDRYTIQDNVINIKYLDPERD 494
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQCRAKNQLKT YSSAQLRVL+LKPSFKKRP+ESETYA EGGNVTI C PEAAP+PK
Sbjct: 495 QAMYQCRAKNQLKTVYSSAQLRVLSLKPSFKKRPMESETYAAEGGNVTIVCKPEAAPRPK 554
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKKDGN+IGSGGRR+I E GNL+ISPVSRDD G Y CTATN +G DE++GRLIVL GP
Sbjct: 555 FVWKKDGNVIGSGGRRRILETGNLIISPVSRDDEGTYVCTATNQYGSDETRGRLIVLRGP 614
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
E+LPP++ ++ + N LRC +T+E+LDVAYIW HNG+RI + DL + +IDG
Sbjct: 615 ELIERLPPRLIMSYNNNQTLRCLGNTDEMLDVAYIWRHNGMRIRDKDLE--NNRHWHIDG 672
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
L+I NA+FA++GEYEC++KS VG+IS+KT +IV GPPG PGGVQVV + K SAT++WT
Sbjct: 673 EYLDIINATFAESGEYECILKSAVGEISSKTDLIVNGPPGPPGGVQVVNIVKISATLRWT 732
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA NG+ IT Y I ARTNWN TWF + E++ E+DRY GRKEA +ENVL P++TYEF+
Sbjct: 733 DGAFNGKVITMYTISARTNWNRTWFPLVENITAIEMDRYNGRKEAFLENVLNPYTTYEFR 792
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
++A NELGYG PSSPSPQY+TP DKP ++PS I GGGGKIGDL+I+W+PLP QN P I
Sbjct: 793 ILAFNELGYGPPSSPSPQYSTPPDKPTKSPSNISGGGGKIGDLTITWDPLPSSDQNGPGI 852
Query: 421 YYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYKIFWR+K +D+E+QS L+EYGNVG +VV I S+FYYT+YEVKVQAIN +G GP SE
Sbjct: 853 YYKIFWRRKGHDSEYQSLPLREYGNVGSSVVPIQSQFYYTKYEVKVQAINVIGEGPISET 912
Query: 480 VTIW 483
T++
Sbjct: 913 TTVY 916
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307210402|gb|EFN86967.1| Contactin [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 315/484 (65%), Positives = 393/484 (81%), Gaps = 4/484 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
MDN+ DLTWTCEAFG+PDVTY+WFRNGE+ + TLP ED+DRY IQDNVLTI+ LNPERD
Sbjct: 509 MDNKGDLTWTCEAFGLPDVTYTWFRNGEIFDMFTLPPEDRDRYIIQDNVLTIKGLNPERD 568
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
AMYQC AKNQLKT YSSAQLRVL+LKPSFKKRP+ESETYA EGGNVT+ C PEAAPKP
Sbjct: 569 EAMYQCCAKNQLKTTYSSAQLRVLSLKPSFKKRPMESETYAAEGGNVTLMCKPEAAPKPD 628
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
F W+KD +G+GGRR+I NGNL+ISPVSRDD G Y C ATN +G DE++GRLIVL P
Sbjct: 629 FKWRKDKTTLGAGGRRRIV-NGNLIISPVSRDDEGTYVCVATNEYGQDETRGRLIVLRAP 687
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ E+LP +I ++ ++N LRC + +E+LD+AYIW HNG+RI N DL + P I++DG
Sbjct: 688 YFIERLPTRIIMSYNQNQTLRCLGYADEMLDMAYIWKHNGMRIRNKDL--MNNPRIHVDG 745
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
L+I NA+F + G+YECV+KS VG+IS+KT +IVEGPPG PGG+ V+ V KTSATI+WT
Sbjct: 746 EYLDIINATFVETGDYECVLKSAVGEISSKTILIVEGPPGPPGGILVMNVAKTSATIRWT 805
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA NGR IT Y++ ART WN+TWF V E++ E+DRY GRKEA +ENVL P+S+YEF+
Sbjct: 806 DGALNGRLITMYRVEARTKWNNTWFPVVENITAIEMDRYIGRKEAHLENVLNPYSSYEFR 865
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
V A NE GYG PSSPSP+++T ADKP +APS I GGGGKIGDL+I+W+PL QN P I
Sbjct: 866 VSAFNEFGYGPPSSPSPRHSTLADKPTKAPSNISGGGGKIGDLTITWDPLSPSDQNGPRI 925
Query: 421 YYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYKIFWR+K ++T+FQS +LKE+GN+G++VV + S++YYTEYEVKVQAIND+G GP S++
Sbjct: 926 YYKIFWRRKGHETQFQSLSLKEFGNIGMSVVSVQSKYYYTEYEVKVQAINDLGAGPISDI 985
Query: 480 VTIW 483
T++
Sbjct: 986 YTVY 989
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242009529|ref|XP_002425536.1| Contactin precursor, putative [Pediculus humanus corporis] gi|212509411|gb|EEB12798.1| Contactin precursor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/484 (65%), Positives = 382/484 (78%), Gaps = 4/484 (0%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D Q DLTWTCEAFG+PDV Y+WFRNG LN LP +D+DRYF+QDN+L I+ LNP D
Sbjct: 546 LDYQEDLTWTCEAFGIPDVNYTWFRNGLPLNPFNLPPQDRDRYFVQDNILQIKRLNPLSD 605
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQCRA NQLKT+YSSAQLRVL+ KPSF+K+PLE+ETYA EGGNVTI CNPEAAP+PK
Sbjct: 606 AGMYQCRASNQLKTKYSSAQLRVLSFKPSFEKKPLEAETYAAEGGNVTIVCNPEAAPRPK 665
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
FVWKK+ +I+GSGGRRKI ENGNL+ISPVSRDD G+Y+CTA+N +G+DES+G LIVL P
Sbjct: 666 FVWKKNNDILGSGGRRKILENGNLIISPVSRDDEGLYTCTASNNYGVDESRGLLIVLRAP 725
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
PP+I + N L C A+T+ELLD AYIWTHNG+RI D + L + DG
Sbjct: 726 KMTSTFPPQIITSVMENFTLNCEANTDELLDTAYIWTHNGIRIKERDSSNLR---LIPDG 782
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
G+L + N + A+AGEYEC+VKS VG+ISTKT VIV GPPG PGGVQVV + TSATIQWT
Sbjct: 783 GILHVINTTLAEAGEYECIVKSAVGRISTKTNVIVHGPPGPPGGVQVVSISTTSATIQWT 842
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360
DGA+NGRPI +Y + ARTNWNSTW NV++ + +EVDRY RKEA +ENVL PWS YEF+
Sbjct: 843 DGASNGRPILYYNVAARTNWNSTWQNVTKLITAREVDRYNNRKEAILENVLSPWSIYEFR 902
Query: 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI 420
V+A N++G G PS PSPQY+TP D P + PS IGGGGGKIGDLSI+W PLP + QN P I
Sbjct: 903 VLAVNQIGPGYPSLPSPQYSTPPDSPNKPPSNIGGGGGKIGDLSITWTPLPPQDQNGPGI 962
Query: 421 YYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YYKIFWR+ + EF+ + LKE+GNVG AVVR+ SE+Y+TEYEVKVQAIND+G GPES V
Sbjct: 963 YYKIFWRRNGTNREFEFKELKEFGNVGAAVVRVNSEYYFTEYEVKVQAINDIGKGPESAV 1022
Query: 480 VTIW 483
I+
Sbjct: 1023 HVIY 1026
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270015155|gb|EFA11603.1| hypothetical protein TcasGA2_TC013632 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/477 (60%), Positives = 368/477 (77%), Gaps = 3/477 (0%)
Query: 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
D++++L WTCEAFG+PDV Y+W++NG L + E++DR IQDNVLTIRYL+ ERDP
Sbjct: 562 DSKSELVWTCEAFGIPDVNYTWWKNGRQLVMGYMEPEERDRIRIQDNVLTIRYLDQERDP 621
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
MYQCRA N LKT+YSSAQLRVL +P+FKK PLE+ETYA EGG+VTI CNPEAAP+P+F
Sbjct: 622 GMYQCRATNSLKTKYSSAQLRVLAFRPTFKKHPLEAETYAAEGGSVTIKCNPEAAPRPEF 681
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
VWKKDGN++GSGG R+I ENGNL+IS VSRDD G Y+C A+N G+DESKGRLIVL GP
Sbjct: 682 VWKKDGNVLGSGGHRRILENGNLVISSVSRDDEGQYTCRASNQFGVDESKGRLIVLRGPR 741
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
E L PKI R LRC A TEE+LD+AY+W+HNG++I ++D+ + + IDGG
Sbjct: 742 LIESLTPKIVTTVGRYFDLRCLAETEEMLDIAYVWSHNGIKIRDIDIKNMNY-RLRIDGG 800
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD 301
L +TNA+F DAGEYEC +KSTVGKIS+++ V+VEG P P G V + K+S T+QWTD
Sbjct: 801 FLSVTNATFTDAGEYECTIKSTVGKISSRSVVVVEG-PPGPPGGVTVSIQKSSFTLQWTD 859
Query: 302 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 361
GAT+G I Y + RTNWN TW N+S V +E+DRYTG+KE+ I+ L PWSTYEF++
Sbjct: 860 GATHGSQIRGYTVSGRTNWNQTWVNISYIVDVREIDRYTGQKESLIDTALTPWSTYEFRI 919
Query: 362 IAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 421
A N G G PS+PSP+++TP D+PY AP IGGGGGKIGDL+I+W PL ++QN P IY
Sbjct: 920 AAWNSWGMGPPSAPSPRHSTPPDRPYIAPYNIGGGGGKIGDLTITWSPLKPDEQNGPGIY 979
Query: 422 YKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
Y+IFW++K+ + EFQ++ LKE+GN G+AVV IP ++YYTEY VKVQAIN +GPGP S
Sbjct: 980 YRIFWKRKDQEVEFQTQELKEFGNTGMAVVHIPPQYYYTEYIVKVQAINQIGPGPIS 1036
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| FB|FBgn0037240 | 1390 | Cont "Contactin" [Drosophila m | 0.938 | 0.341 | 0.519 | 2.7e-132 | |
| UNIPROTKB|G3XAD4 | 807 | CNTN4 "Contactin 4, isoform CR | 0.920 | 0.576 | 0.313 | 1.7e-57 | |
| UNIPROTKB|F1NYN7 | 987 | CNTN5 "Contactin-5" [Gallus ga | 0.922 | 0.472 | 0.320 | 9.7e-57 | |
| UNIPROTKB|Q8IWV2 | 1026 | CNTN4 "Contactin-4" [Homo sapi | 0.920 | 0.453 | 0.313 | 1.2e-56 | |
| UNIPROTKB|Q90W79 | 1027 | CNTN5 "Contactin-5" [Gallus ga | 0.922 | 0.453 | 0.320 | 1.2e-56 | |
| RGD|3253 | 1028 | Cntn3 "contactin 3 (plasmacyto | 0.932 | 0.458 | 0.307 | 1.9e-56 | |
| RGD|621300 | 1021 | Cntn1 "contactin 1" [Rattus no | 0.908 | 0.449 | 0.309 | 8.5e-56 | |
| MGI|MGI:105980 | 1020 | Cntn1 "contactin 1" [Mus muscu | 0.908 | 0.45 | 0.309 | 2.3e-55 | |
| RGD|621361 | 1026 | Cntn4 "contactin 4" [Rattus no | 0.910 | 0.448 | 0.315 | 2.4e-55 | |
| MGI|MGI:1095737 | 1026 | Cntn4 "contactin 4" [Mus muscu | 0.910 | 0.448 | 0.317 | 3e-55 |
| FB|FBgn0037240 Cont "Contactin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
Identities = 250/481 (51%), Positives = 319/481 (66%)
Query: 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
D +D+T+ CEAF +PD Y+W++N E L+ + ++DRY IQDNVLTI++L ++D
Sbjct: 673 DYNSDVTFICEAFAIPDANYTWYKNAERLDPANI---NRDRYIIQDNVLTIKFLEKDKDD 729
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
AMYQC A+NQLKT +SSAQLRVL++KPSFKK PLESE YA GN TI C+PEAAP+PKF
Sbjct: 730 AMYQCGAQNQLKTSFSSAQLRVLSMKPSFKKHPLESEVYAVYNGNTTIVCDPEAAPRPKF 789
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
WKKDG +IGSGG R+I +G L ISP SRDD GIY+C A+N G DES R+IVL
Sbjct: 790 QWKKDGQVIGSGGHRRILPSGTLTISPTSRDDEGIYTCIASNQAGTDESHARVIVLQEIR 849
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
+ E P +I H + L C A +ELLD+AY+W HNG + N N T I +D
Sbjct: 850 FIETPPQRIVSKEHDLIFLHCEAAFDELLDIAYVWKHNGEVLKN---NHDGTGRIIVDWN 906
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD 301
L + N S DAG+YECVVKS V +IS+KT+ KT A I+W D
Sbjct: 907 RLTVHNTSMRDAGDYECVVKSAVNEISSKTSVSIEGAPGAPGGVQVIQISKTKAIIEWVD 966
Query: 302 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 361
G+ NGR I +Y I+ RTNWN TW NVS HV +EVDRYT R++A + N L PWS YEF V
Sbjct: 967 GSHNGRAIRYYNILGRTNWNRTWVNVSTHVQAREVDRYTSRQQAEVVN-LTPWSAYEFSV 1025
Query: 362 IAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIY 421
A N+LG G PS+PSP Y+T DKPY AP DL+I+W+PL ++Q++ I+
Sbjct: 1026 TAVNDLGIGTPSAPSPIYSTYEDKPYIAPRNVGGGGGKIGDLTITWDPLLPQEQHSHGIH 1085
Query: 422 YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
YK+FW+ K E+ S+ +K+ ++G+AVV IP YYTEYEVKVQAIN VG GPESE+
Sbjct: 1086 YKVFWKLKGAIEWASDEIKKQDHMGVAVVNIPLNNYYTEYEVKVQAINSVGKGPESEIAV 1145
Query: 482 I 482
I
Sbjct: 1146 I 1146
|
|
| UNIPROTKB|G3XAD4 CNTN4 "Contactin 4, isoform CRA_e" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 151/481 (31%), Positives = 224/481 (46%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ ++ W C+A G P TY W +NGE PL +DR I+ L I +N D M
Sbjct: 111 EENVFWECKANGRPKPTYKWLKNGE-------PLLTRDRIQIEQGTLNITIVNLS-DAGM 162
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
YQC A+N+ +S+A+L V+ + P F + L+ T GG V I C P+A+PKP + W
Sbjct: 163 YQCLAENKHGVIFSNAELSVIAVGPDFSRTLLKRVTLVKVGGEVVIECKPKASPKPVYTW 222
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
KK +I+ R I E+GNL I V++ D+G Y+C ATN G S G L+V P+
Sbjct: 223 KKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVV-KDPTRV 281
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGL 242
P + + ++ L C + LD+ + W+ NG I + D + E G
Sbjct: 282 MVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLIDFDRDGDHFERVGGQDSAGD 341
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDG 302
L I N AG+Y C+V+++V ++S T+A + W G
Sbjct: 342 LMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPG 401
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
N PIT Y I ART ++ W VS + + +D T A++ L PW YEF+ +
Sbjct: 402 PDNHSPITMYVIQARTPFSVGWQAVS--TVPELIDGKTFT--ATVVG-LNPWVEYEFRTV 456
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYY 422
A N +G GEPS PS + T P P+ +L I+WE +P E QN Y
Sbjct: 457 AANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGY 516
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ +R + L + V R S ++ +EVKV N+ G GP S +
Sbjct: 517 VVAFRPYGKMIWMLTVLAS-ADASRYVFRNESVHPFSPFEVKVGVFNNKGEGPFSPTTVV 575
Query: 483 W 483
+
Sbjct: 576 Y 576
|
|
| UNIPROTKB|F1NYN7 CNTN5 "Contactin-5" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 9.7e-57, P = 9.7e-57
Identities = 155/484 (32%), Positives = 222/484 (45%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D+ L W C+A G P TY W +NG +PL Q R + ++VL IR +N D
Sbjct: 288 LDSGEQLRWECKATGKPRPTYRWLKNG-------VPLWPQSRIEMINSVLMIRTVNIS-D 339
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+N+ T Y+SA+L++L P+F + +G V I C P+A+PKP
Sbjct: 340 AGMYQCLAENKYGTIYASAELKILASAPTFPLNQMRKTIIITKGQEVVIECKPQASPKPT 399
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
WKK + R I G+L I S+ D G YSC NV G E + V P
Sbjct: 400 ITWKKGDKALRESKRVTILPQGSLRILNASKSDEGRYSCRGVNVFGSAEIVASVSVKE-P 458
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINID 239
+ E P KI + ++ L C A + LDV + WT NG I + + E+
Sbjct: 459 TRIELTPKKIELTVGESIVLSCKALHDSTLDVTFYWTLNGQPIDFDKEDGHFESIKAQAS 518
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQW 299
L I N AG Y C V++ +S +T T+AT+ W
Sbjct: 519 SADLMIRNILLMHAGRYGCRVQTAADAVSDETELLVRGPPGPPGVVIVEEITDTTATLSW 578
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV-DRYTGRKEASIENVLVPWSTYE 358
+ GA N PI+ Y + AR+ ++ W V K V D +G E+++ L PW YE
Sbjct: 579 SPGADNHSPISLYNLQARSPFSLGWQTV------KTVPDVISGDMESAMAVELNPWVEYE 632
Query: 359 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAP 418
F+V+A N++G G+PS+PS T P P+ +L I+WEP+ E QN
Sbjct: 633 FRVVATNKIGTGDPSAPSRMIRTNEAVPKTPPANVSGRSGRRHELVIAWEPVSEEFQNGE 692
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
Y + +R N T E + + + R S T +EVKV N+ G GP S
Sbjct: 693 GFGYIVAFRP-NGTRGWKEKMVTSSDASKFIYRDESVPPLTPFEVKVGVYNNKGDGPFSP 751
Query: 479 VVTI 482
+V I
Sbjct: 752 IVVI 755
|
|
| UNIPROTKB|Q8IWV2 CNTN4 "Contactin-4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 151/481 (31%), Positives = 224/481 (46%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ ++ W C+A G P TY W +NGE PL +DR I+ L I +N D M
Sbjct: 330 EENVFWECKANGRPKPTYKWLKNGE-------PLLTRDRIQIEQGTLNITIVNLS-DAGM 381
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
YQC A+N+ +S+A+L V+ + P F + L+ T GG V I C P+A+PKP + W
Sbjct: 382 YQCLAENKHGVIFSNAELSVIAVGPDFSRTLLKRVTLVKVGGEVVIECKPKASPKPVYTW 441
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
KK +I+ R I E+GNL I V++ D+G Y+C ATN G S G L+V P+
Sbjct: 442 KKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVV-KDPTRV 500
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGL 242
P + + ++ L C + LD+ + W+ NG I + D + E G
Sbjct: 501 MVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLIDFDRDGDHFERVGGQDSAGD 560
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDG 302
L I N AG+Y C+V+++V ++S T+A + W G
Sbjct: 561 LMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPG 620
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
N PIT Y I ART ++ W VS + + +D T A++ L PW YEF+ +
Sbjct: 621 PDNHSPITMYVIQARTPFSVGWQAVS--TVPELIDGKTFT--ATVVG-LNPWVEYEFRTV 675
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYY 422
A N +G GEPS PS + T P P+ +L I+WE +P E QN Y
Sbjct: 676 AANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGY 735
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ +R + L + V R S ++ +EVKV N+ G GP S +
Sbjct: 736 VVAFRPYGKMIWMLTVLAS-ADASRYVFRNESVHPFSPFEVKVGVFNNKGEGPFSPTTVV 794
Query: 483 W 483
+
Sbjct: 795 Y 795
|
|
| UNIPROTKB|Q90W79 CNTN5 "Contactin-5" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 155/484 (32%), Positives = 222/484 (45%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D+ L W C+A G P TY W +NG +PL Q R + ++VL IR +N D
Sbjct: 328 LDSGEQLRWECKATGKPRPTYRWLKNG-------VPLWPQSRIEMINSVLMIRTVNIS-D 379
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+N+ T Y+SA+L++L P+F + +G V I C P+A+PKP
Sbjct: 380 AGMYQCLAENKYGTIYASAELKILASAPTFPLNQMRKTIIITKGQEVVIECKPQASPKPT 439
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
WKK + R I G+L I S+ D G YSC NV G E + V P
Sbjct: 440 ITWKKGDKALRESKRVTILPQGSLRILNASKSDEGRYSCRGVNVFGSAEIVASVSVKE-P 498
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINID 239
+ E P KI + ++ L C A + LDV + WT NG I + + E+
Sbjct: 499 TRIELTPKKIELTVGESIVLSCKALHDSTLDVTFYWTLNGQPIDFDKEDGHFESIKAQAS 558
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQW 299
L I N AG Y C V++ +S +T T+AT+ W
Sbjct: 559 SADLMIRNILLMHAGRYGCRVQTAADAVSDETELLVRGPPGPPGVVIVEEITDTTATLSW 618
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV-DRYTGRKEASIENVLVPWSTYE 358
+ GA N PI+ Y + AR+ ++ W V K V D +G E+++ L PW YE
Sbjct: 619 SPGADNHSPISLYNLQARSPFSLGWQTV------KTVPDVISGDMESAMAVELNPWVEYE 672
Query: 359 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAP 418
F+V+A N++G G+PS+PS T P P+ +L I+WEP+ E QN
Sbjct: 673 FRVVATNKIGTGDPSAPSRMIRTNEAVPKTPPANVSGRSGRRHELVIAWEPVSEEFQNGE 732
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
Y + +R N T E + + + R S T +EVKV N+ G GP S
Sbjct: 733 GFGYIVAFRP-NGTRGWKEKMVTSSDASKFIYRDESVPPLTPFEVKVGVYNNKGDGPFSP 791
Query: 479 VVTI 482
+V I
Sbjct: 792 IVVI 795
|
|
| RGD|3253 Cntn3 "contactin 3 (plasmacytoma associated)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.9e-56, P = 1.9e-56
Identities = 151/491 (30%), Positives = 229/491 (46%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
L W C A G P +Y W +NG+ L LE+ R I++ LTI LN D M+QC
Sbjct: 335 LYWECRASGKPKPSYRWLKNGD-----ALVLEE--RIQIENGALTIANLNVS-DSGMFQC 386
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A+N+ YSSA+L+VL P F + P++ G V + C P A+P+ WKK
Sbjct: 387 IAENKHGLIYSSAELKVLASAPDFSRNPMKKMIQVQVGSLVILDCKPSASPRALSFWKKG 446
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL 186
++ R + +G L I V++ D+GIY+C A N G +L+V P+
Sbjct: 447 DTVVREQARISLLNDGGLKIMNVTKADAGIYTCIAENQFGKANGTTQLVVTE-PTRIILA 505
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEI 245
P + +A ++ L C + LLD+ + W NG D + E + G L+ I
Sbjct: 506 PSNMDVAVGESIILPCQVQHDPLLDIMFAWYFNGTLTDFKKDGSHFEKVGGSSSGDLM-I 564
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATN 305
N +G+Y C+V++ V +S+ T+A + WT+G +
Sbjct: 565 RNIQLKHSGKYVCMVQTGVDSVSSAAELIVRGSPGPPENVKVDEITDTTAQLSWTEGTDS 624
Query: 306 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 365
P+ Y + ART ++ W NV + + +D T R +E L PW YEF+V+A N
Sbjct: 625 HSPVISYAVQARTPFSVGWQNV--RTVPEAIDGKT-RTATVVE--LNPWVEYEFRVVASN 679
Query: 366 ELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIF 425
++G GEPS PS + T P APS +L I+W+P+P E QN Y +
Sbjct: 680 KIGGGEPSLPSEKVRTEEAAPEVAPSEVSGGGGSRSELVITWDPVPEELQNGGGFGYVVA 739
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW-- 483
+R T + + N V R S ++ YEVKV N+ G GP S V T++
Sbjct: 740 FRPLGVTTWIQTVVTSPDNPRY-VFRNESIVPFSPYEVKVGVYNNKGEGPFSPVTTVFSA 798
Query: 484 -HDPLVIISYV 493
+P V S++
Sbjct: 799 EEEPTVAPSHI 809
|
|
| RGD|621300 Cntn1 "contactin 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 8.5e-56, P = 8.5e-56
Identities = 150/485 (30%), Positives = 229/485 (47%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D +DL W C A G P T W +NG + L L D + + N
Sbjct: 342 VDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYD------------VTFENA--- 386
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+N T Y++A+L++L L P+F+ P++ + A +GG V I C P+AAPKPK
Sbjct: 387 -GMYQCIAENAYGTIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPK 445
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
F W K + + R I+E+G+L I+ ++R+D GIY+C A N G S G L++ + P
Sbjct: 446 FSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITN-P 504
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETP-NINI 238
+ P I N ++C+A + LD+ ++W+ NG I N ++ + N +
Sbjct: 505 TRIILAPINADITVGENATMQCAASFDPSLDLTFVWSFNGYVIDFNKEITNIHYQRNFML 564
Query: 239 DG-GLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATI 297
D G L I NA AG Y C ++ V S TS +
Sbjct: 565 DANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVAL 624
Query: 298 QWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357
W+ G+ N PI+ Y I +T + W + + G E++ L+PW Y
Sbjct: 625 TWSRGSDNHSPISKYTIQTKTILSDDWKDAKT-----DPPIIEGNMESAKAVDLIPWMEY 679
Query: 358 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNA 417
EF+V+A N LG GEPS PS + T P APS +L+I+W PL RE
Sbjct: 680 EFRVVATNTLGTGEPSIPSNRIKTDGAAPNVAPSDVGGGGGTNRELTITWAPLSREYHYG 739
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
N Y + ++ + E++ T+ + G V + + T ++VKV+A N+ G GP S
Sbjct: 740 NNFGYIVAFKPFDGEEWKKVTVTN-PDTGRYVHKDETMTPSTAFQVKVKAFNNKGDGPYS 798
Query: 478 EVVTI 482
+ I
Sbjct: 799 LIAVI 803
|
|
| MGI|MGI:105980 Cntn1 "contactin 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 150/485 (30%), Positives = 229/485 (47%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+D +DL W C A G P T W +NG + L L D + + N
Sbjct: 342 VDIGSDLYWPCIATGKPIPTIRWLKNGYSYHKGELRLYD------------VTFENA--- 386
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
MYQC A+N + Y++A+L++L L P+F+ P++ + A +GG V I C P+AAPKPK
Sbjct: 387 -GMYQCIAENAYGSIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPK 445
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
F W K + + R I+E+G+L I+ ++R+D GIY+C A N G S G L++ + P
Sbjct: 446 FSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITN-P 504
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETP-NINI 238
+ P I N ++C+A + LD+ ++W+ NG I N ++ + N +
Sbjct: 505 TRIILAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKEITHIHYQRNFML 564
Query: 239 DG-GLLEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATI 297
D G L I NA AG Y C ++ V S TS +
Sbjct: 565 DANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVAL 624
Query: 298 QWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357
W+ G+ N PI+ Y I +T + W + + G E++ L+PW Y
Sbjct: 625 TWSRGSDNHSPISKYTIQTKTILSDDWKDAKT-----DPPIIEGNMESAKAVDLIPWMEY 679
Query: 358 EFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNA 417
EF+V+A N LG GEPS PS + T P APS +L+I+W PL RE
Sbjct: 680 EFRVVATNTLGTGEPSIPSNRIKTDGAAPNVAPSDVGGGGGTNRELTITWAPLSREYHYG 739
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
N Y + ++ + E++ T+ + G V + + T ++VKV+A N+ G GP S
Sbjct: 740 NNFGYIVAFKPFDGEEWKKVTVTN-PDTGRYVHKDETMTPSTAFQVKVKAFNNKGDGPYS 798
Query: 478 EVVTI 482
V I
Sbjct: 799 LVAVI 803
|
|
| RGD|621361 Cntn4 "contactin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 2.4e-55, P = 2.4e-55
Identities = 150/476 (31%), Positives = 219/476 (46%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
W C+A G P TY W +NG+ PL ++R I+ L I +N D MYQC A
Sbjct: 335 WECKANGRPKPTYRWLKNGD-------PLLTRERIQIEQGTLNITIVNLS-DAGMYQCVA 386
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128
+N+ Y+SA+L V+ P F + L+ T GG V I C P+A+P+P + W+K
Sbjct: 387 ENKHGVIYASAELSVIAESPDFSRTLLKRVTLVKVGGEVVIECKPKASPRPVYTWRKGRE 446
Query: 129 IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
I+ R I E+GNL I V++ D+G Y+C ATN G S G ++V P+ P
Sbjct: 447 ILRENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNVVV-KDPTKVMVPPS 505
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEITN 247
+ + ++ L C + LD+ + WT NG I + D + E G L I N
Sbjct: 506 SMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRN 565
Query: 248 ASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATNGR 307
AG+Y C+V+++V K+S T+A + W G N
Sbjct: 566 IQLKHAGKYVCMVQTSVDKLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHS 625
Query: 308 PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL 367
PIT Y I ART ++ W VS + + VD T A++ L PW YEF+ +A N +
Sbjct: 626 PITMYVIQARTPFSVGWQAVS--TVPELVDGKTFT--ATVVG-LNPWVEYEFRTVAANVI 680
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWR 427
G GEPS PS + T P P+ +L I+WE +P E QN Y + +R
Sbjct: 681 GIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFR 740
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ L + V R S ++ +EVKV N+ G GP S ++
Sbjct: 741 PHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFEVKVGVFNNKGEGPFSPTTLVY 795
|
|
| MGI|MGI:1095737 Cntn4 "contactin 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 3.0e-55, P = 3.0e-55
Identities = 151/476 (31%), Positives = 218/476 (45%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
W C+A G P TY W +NG+ PL +DR I+ L I +N D MYQC A
Sbjct: 335 WECKANGRPKPTYRWLKNGD-------PLLTRDRIQIEQGTLNITIVNLS-DAGMYQCVA 386
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128
+N+ +SSA+L V+ P F + L+ T GG V I C P+A+P+P + W+K
Sbjct: 387 ENKHGVIFSSAELSVIAESPDFSRTLLKRVTLVKVGGEVVIECKPKASPRPVYTWRKGRE 446
Query: 129 IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
I+ R I E+GNL I V++ D+G Y+C ATN G S G +IV P+ P
Sbjct: 447 ILRENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNVIV-KDPTKVMVPPS 505
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEITN 247
+ + ++ L C + LD+ + WT NG I + D + E G L I N
Sbjct: 506 SMDVTVGESIVLPCQVTHDHSLDIVFTWTFNGHLIDFDKDGDHFERVGGQDSAGDLMIRN 565
Query: 248 ASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATNGR 307
AG+Y C+V+++V K+S T+A + W G N
Sbjct: 566 IQLKHAGKYVCMVQTSVDKLSVAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHS 625
Query: 308 PITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL 367
PIT Y I ART ++ W V+ + VD T A++ L PW YEF+ +A N +
Sbjct: 626 PITMYVIQARTPFSVGWQAVN--TVPDLVDGKTFT--ATVVG-LNPWVEYEFRTVAANVI 680
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWR 427
G GEPS PS + T P P+ +L I+WE +P E QN Y + +R
Sbjct: 681 GIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFR 740
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ L + V R S ++ +EVKV N+ G GP S ++
Sbjct: 741 PHGKMIWMLTVLAS-ADASRYVFRNESVRPFSPFEVKVGVFNNKGEGPFSPTTLVY 795
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VN14 | CONT_DROME | No assigned EC number | 0.5592 | 0.9386 | 0.3410 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 505 | |||
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 2e-18 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-14 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 3e-14 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 3e-14 | |
| cd05852 | 73 | cd05852, Ig5_Contactin-1, Fifth Ig domain of conta | 5e-14 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 9e-14 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 9e-14 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-13 | |
| cd04970 | 85 | cd04970, Ig6_Contactin_like, Sixth Ig domain of co | 2e-13 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 5e-13 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 9e-11 | |
| cd05722 | 95 | cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l | 5e-10 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 1e-09 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 1e-09 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 8e-09 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 2e-08 | |
| cd05734 | 79 | cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li | 3e-08 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 4e-08 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 5e-08 | |
| cd04968 | 88 | cd04968, Ig3_Contactin_like, Third Ig domain of co | 5e-08 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 6e-08 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 8e-08 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 9e-08 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 9e-08 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 9e-08 | |
| cd05854 | 85 | cd05854, Ig6_Contactin-2, Sixth Ig domain of conta | 2e-07 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 2e-07 | |
| cd00063 | 93 | cd00063, FN3, Fibronectin type 3 domain; One of th | 3e-07 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 3e-07 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 3e-07 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 5e-07 | |
| cd05745 | 74 | cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig | 6e-07 | |
| cd05853 | 85 | cd05853, Ig6_Contactin-4, Sixth Ig domain of conta | 1e-06 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 3e-06 | |
| cd05849 | 93 | cd05849, Ig1_Contactin-1, First Ig domain of conta | 3e-06 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 6e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 7e-06 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 8e-06 | |
| cd05851 | 88 | cd05851, Ig3_Contactin-1, Third Ig domain of conta | 8e-06 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 9e-06 | |
| cd05848 | 94 | cd05848, Ig1_Contactin-5, First Ig domain of conta | 9e-06 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 1e-05 | |
| cd05760 | 77 | cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like | 2e-05 | |
| cd05748 | 74 | cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d | 2e-05 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 3e-05 | |
| smart00060 | 83 | smart00060, FN3, Fibronectin type 3 domain | 3e-05 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 3e-05 | |
| cd05726 | 90 | cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like | 3e-05 | |
| cd04972 | 90 | cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul | 3e-05 | |
| cd04967 | 91 | cd04967, Ig1_Contactin, First Ig domain of contact | 4e-05 | |
| cd05850 | 94 | cd05850, Ig1_Contactin-2, First Ig domain of conta | 6e-05 | |
| cd05773 | 109 | cd05773, Ig8_hNephrin_like, Eighth immunoglobulin- | 6e-05 | |
| cd04967 | 91 | cd04967, Ig1_Contactin, First Ig domain of contact | 9e-05 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 9e-05 | |
| cd05754 | 85 | cd05754, Ig3_Perlecan_like, Third immunoglobulin ( | 1e-04 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 1e-04 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 1e-04 | |
| pfam00041 | 84 | pfam00041, fn3, Fibronectin type III domain | 2e-04 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 2e-04 | |
| cd05732 | 96 | cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig | 3e-04 | |
| cd05773 | 109 | cd05773, Ig8_hNephrin_like, Eighth immunoglobulin- | 4e-04 | |
| cd05873 | 87 | cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like | 4e-04 | |
| cd05727 | 96 | cd05727, Ig2_Contactin-2-like, Second Ig domain of | 4e-04 | |
| cd05867 | 76 | cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I | 7e-04 | |
| cd05733 | 77 | cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig | 8e-04 | |
| cd05895 | 76 | cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)- | 8e-04 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.001 | |
| cd04973 | 79 | cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like | 0.001 | |
| cd05875 | 77 | cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul | 0.001 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 0.001 | |
| cd05738 | 74 | cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu | 0.001 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 0.001 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 0.002 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 0.002 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 0.002 | |
| cd05738 | 74 | cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu | 0.002 | |
| cd05893 | 75 | cd05893, Ig_Palladin_C, C-terminal immunoglobulin | 0.002 | |
| cd05757 | 92 | cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig) | 0.002 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 0.003 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 0.003 | |
| cd05758 | 98 | cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I | 0.003 | |
| cd05741 | 92 | cd05741, Ig_CEACAM_D1_like, First immunoglobulin ( | 0.004 | |
| cd05870 | 98 | cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik | 0.004 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-18
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
GG+V I C P+AAPKP W K ++ + R I+ +G+L I V++ D G Y+C A N
Sbjct: 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60
Query: 164 VHGMDESKGRLIV 176
G S G L V
Sbjct: 61 FFGKANSTGSLSV 73
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-14
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIY 157
EG + C P P W KDG + S R K+ G L IS V DD G Y
Sbjct: 12 VQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKY 71
Query: 158 SCTATNVHGMDESKGRLIV 176
+C ATN G E+ L V
Sbjct: 72 TCVATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-14
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P P ++V +V TS T+ WT +G PIT Y + R + W V
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPG------ 54
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
++ L P + YEF+V A N G PS
Sbjct: 55 --SETSYTLTG-LKPGTEYEFRVRAVNGGGESPPSESVT 90
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-14
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 97 SETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDS 154
S+T G + C+ P P+P W+KDG + R +I ++GNLLI+ + D
Sbjct: 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDE 63
Query: 155 GIYSCTATNVHGMDESK-GRLIV 176
G Y C ATN+ G ES RL V
Sbjct: 64 GTYKCVATNMVGERESAAARLSV 86
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 5e-14
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
GG V I C P+AAPKPKF W K ++ + R I+++G+L I +++ D G Y+C A N
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60
Query: 164 VHGMDESKGRLIV 176
G S G L V
Sbjct: 61 NRGKANSTGVLSV 73
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-14
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI-IGSGGRRKIFENGN---LLISPVSRD 152
EG +VT+ C +P P+ W K G + GR + +G+ L IS V+ +
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 153 DSGIYSCTATNVHGMDESKGRLIV 176
DSG Y+C ATN G S L V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-14
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI-IGSGGRRKIFENGN---LLISPVSRD 152
EG +VT+ C +P P+ W K G + GR + +G+ L IS V+ +
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 153 DSGIYSCTATNVHGMDESKGRLIV 176
DSG Y+C ATN G S L V
Sbjct: 62 DSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-13
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
EG +VT+ C E P P W KDG + R L I VS +DSG+Y+C A
Sbjct: 1 EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVA-SGSTLTIKSVSLEDSGLYTCVAE 59
Query: 163 NVHG 166
N G
Sbjct: 60 NSAG 63
|
Length = 63 |
| >gnl|CDD|143171 cd04970, Ig6_Contactin_like, Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-13
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE----LETPNINIDGGLLEITNASFAD 252
++ L+C A + LD+ + W+ NGV I D ++ G L I NA
Sbjct: 2 SITLQCHASHDPTLDLTFTWSFNGVPI---DFDKDGGHYRRVGGKDSNGDLMIRNAQLKH 58
Query: 253 AGEYECVVKSTVGKISTKTTVIVEGPP 279
AG+Y C ++ V +S +IV GPP
Sbjct: 59 AGKYTCTAQTVVDSLSASADLIVRGPP 85
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neur onal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 85 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-13
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ L W C+A G P Y W +NG+ L S ++R ++ L I L+ D MY
Sbjct: 15 SSLRWECKASGNPRPAYRWLKNGQPLAS-------ENRIEVEAGDLRITKLSLS-DSGMY 66
Query: 65 QCRAKNQLKTRYSSAQLRV 83
QC A+N+ T Y+SA+L V
Sbjct: 67 QCVAENKHGTIYASAELAV 85
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 57.5 bits (138), Expect = 9e-11
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG-------GRRKIFENGNLLISPVSRDDSGIYSC 159
VT+ C P P W K+G + S R + L IS V+ +DSG Y+C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 160 TATNVHGMDESK 171
A+N G +
Sbjct: 61 VASNSAGTVSAS 72
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-10
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 89 SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLI 146
F P S+ A GG V + C+ E P PK WKKDG ++ S RR+ NG+LLI
Sbjct: 1 WFLSEP--SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLI 58
Query: 147 SPV-----SRDDSGIYSCTATN 163
+ V ++ D G Y C A N
Sbjct: 59 TSVVHSKHNKPDEGFYQCVAQN 80
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-09
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
S+T A G ++ C P+P + W K+G + S R ++ E G+L I+ +S DSG+
Sbjct: 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGM 65
Query: 157 YSCTATNVHG 166
Y C A N HG
Sbjct: 66 YQCVAENKHG 75
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-09
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
EG +VT+ C+ P P + W KDG + S N VS +DSG Y+C A+
Sbjct: 13 EGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFFTPN-------VSAEDSGTYTCVAS 65
Query: 163 NVHG 166
N G
Sbjct: 66 NGGG 69
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 52.1 bits (124), Expect = 8e-09
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQ 65
+T TC A G P T +W +NG+ L S L R + LTI + E D Y
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLE-DSGTYT 59
Query: 66 CRAKNQLKTRYSSAQ 80
C A N T +S
Sbjct: 60 CVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-08
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSC 159
G +VT+ C+ P+ W K+G + EN L IS V+ +DSG Y+C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 160 TA 161
Sbjct: 61 VV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-08
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 107 VTIFCNPEAAPKPKFVWK--------KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158
VT+ C+ E P P VWK + + GR ++ NG+LLI V +DSG Y
Sbjct: 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60
Query: 159 CTATNVHGMDESK 171
C +N G D SK
Sbjct: 61 CKVSNDVGADASK 73
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-08
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 279 PGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P ++V +V TS T+ W I Y++ R S W KEV
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREE-GSEW---------KEV 50
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370
+ ++ L P + YEF+V A N G G
Sbjct: 51 NVTPSSTSYTLTG-LKPGTEYEFRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-08
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 16/95 (16%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR---TNWNSTWFNVSEHVIGKEVDR 338
P + V +V TS T+ W+ PIT Y++ R V
Sbjct: 3 PTNLTVTDVTSTSLTLSWS-PPPGNGPITGYEVEYRPVNGGEEWKEITVPGTT-----TS 56
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
YT + L P + YE +V A N G G PS
Sbjct: 57 YT------LTG-LKPGTEYEVRVQAVNGAGEGPPS 84
|
Length = 84 |
| >gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-08
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLI 146
PS + +TYA +G NVT+ C P P+ W+K DG++ S L I
Sbjct: 1 PSIIVVFPK-DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM--SGAVLKI 57
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ +D G Y C A N+ G D +GR+ V
Sbjct: 58 PNIQFEDEGTYECEAENIKGKDTHQGRIYV 87
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLL 145
KP P S T GG VT+ C+ E P P W ++G+I G G L
Sbjct: 1 KPVITVSPSPSVT---SGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGS-SGSTLT 56
Query: 146 ISPVSRDDSGIYSCTATN 163
+S V+ +DSG Y+C A+N
Sbjct: 57 LSSVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-08
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC A G P +W ++G+ PL + +R+ + LTI+ ++ E D +Y
Sbjct: 4 SVTLTCPAEGNPVPNITWLKDGK-------PLPESNRFVASGSTLTIKSVSLE-DSGLYT 55
Query: 66 CRAKN 70
C A+N
Sbjct: 56 CVAEN 60
|
Length = 63 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-08
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+T +CEA G P +W++ G L + R+ + + LTI + PE D
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQG------GKLLAESGRFSVSRSGSTSTLTISNVTPE-DS 63
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C A N + S L V
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 9e-08
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+T +CEA G P +W++ G L + R+ + + LTI + PE D
Sbjct: 11 SVTLSCEASGSPPPEVTWYKQG------GKLLAESGRFSVSRSGSTSTLTISNVTPE-DS 63
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C A N + S L V
Sbjct: 64 GTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-08
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 107 VTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165
V C P P +W+K DG + GR +I ++ +L I V+ D G Y+C A N+
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGEL--PKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMV 58
Query: 166 GMDESKGRLIV 176
G E+ L V
Sbjct: 59 GKIEASASLTV 69
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143262 cd05854, Ig6_Contactin-2, Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-07
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFAD 252
NL L+C A + +D+ + W+ + I DL++ ++ G L I NA +
Sbjct: 2 NLTLQCHASHDPTMDLTFTWSLDDFPI---DLDKPNGHYRRMEVKETIGDLVIVNAQLSH 58
Query: 253 AGEYECVVKSTVGKISTKTTVIVEGPP 279
AG Y C ++ V S T++V GPP
Sbjct: 59 AGTYTCTAQTVVDSASASATLVVRGPP 85
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC proce sses. Length = 85 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-07
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGN-LL 145
P+ + R E A G +VT+ C+ + P+P W KDG I SG + F E+G+ +
Sbjct: 2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMT 61
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
I V + D Y+C A N G E++ L V
Sbjct: 62 ILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-07
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+++SW P + P Y + +R+K +++ G+ + P TE
Sbjct: 17 VTLSWTPPEDD--GGPITGYVVEYREKGSGDWKEVE-VTPGSETSYTLTGLKP----GTE 69
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
YE +V+A+N G P SE VT+
Sbjct: 70 YEFRVRAVNGGGESPPSESVTV 91
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-07
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
PP +T+ ++ L C A W G ++ + + + L I+
Sbjct: 1 PPSVTVKEGESVTLSCEASGSP--PPEVTWYKQGGKLLAESGRFSVSRSGST--STLTIS 56
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIV 275
N + D+G Y C ++ G S+ TT+ V
Sbjct: 57 NVTPEDSGTYTCAATNSSGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-07
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
PP +T+ ++ L C A W G ++ + + + L I+
Sbjct: 1 PPSVTVKEGESVTLSCEASGSP--PPEVTWYKQGGKLLAESGRFSVSRSGST--STLTIS 56
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIV 275
N + D+G Y C ++ G S+ TT+ V
Sbjct: 57 NVTPEDSGTYTCAATNSSGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-07
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 111 CNPEAAPKPKFVWKKDGNIIGSGGRRK----IFENGNLLISPVSRDDSGIYSCTATNVHG 166
C P P+ W+KDG R + + E+ I V +D+G+YSCTA N G
Sbjct: 5 CAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAG 64
Query: 167 MDESKGRLIVL 177
+ L VL
Sbjct: 65 SISANATLTVL 75
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-07
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
EG V C + P+P W K G+ + R + +G L IS V+ D G Y C A
Sbjct: 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60
Query: 163 NVHGMDESKGRLIV 176
N+ G + +L V
Sbjct: 61 NIVGSQRTVAQLTV 74
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74 |
| >gnl|CDD|143261 cd05853, Ig6_Contactin-4, Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-06
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIG-NMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L C + LD+ + W+ NG I D + E G L I + AG+Y C
Sbjct: 5 LPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVC 64
Query: 259 VVKSTVGKISTKTTVIVEGPP 279
+V+++V K+S +IV GPP
Sbjct: 65 MVQTSVDKLSAAADLIVRGPP 85
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. Length = 85 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
+++ L C A W +G + E+ G L I + S D+G
Sbjct: 3 QSVTLTCPAEGNP--VPNITWLKDGKPLP-------ESNRFVASGSTLTIKSVSLEDSGL 53
Query: 256 YECVVKSTVG 265
Y CV +++ G
Sbjct: 54 YTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 88 PSFKKRPLESETYAGEG--GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL 145
P F+++P+++ Y E G V++ C A P P + W+K+ I R GNL+
Sbjct: 2 PVFEEQPIDT-IYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLV 60
Query: 146 IS-PVSRDDSGIYSCTATNVHGMDESK 171
I+ P D+G Y C +N++G S+
Sbjct: 61 INNPDKYKDAGRYVCIVSNIYGKVRSR 87
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-06
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
V I C+ + P+P W KDG + G+ I G L I V D G Y C A N G
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 7e-06
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGN-MDLNELETPNINIDGGLLEITNASFADAGEY 256
+ L C A + W NG + + + + + L I+N + D+G Y
Sbjct: 1 VTLTCLASGPPPPTI--TWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 257 ECVVKSTVGKISTKTT 272
CV ++ G +S T
Sbjct: 59 TCVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 8e-06
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
TC G PD T SWF++G+ L S + Y LTI + P+ D Y C
Sbjct: 21 TCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT-----LTISNVQPD-DEGKYTCV 74
Query: 68 AKNQLKTRYSSAQLRV 83
A N +SA+L V
Sbjct: 75 ATNSAGEAEASAELTV 90
|
Length = 90 |
| >gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-06
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKK-------DGNIIGSGGRRKIFENGNLLISPVS 150
+TYA +G NVT+ C P P W+K I SG KIF +
Sbjct: 10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFN--------IQ 61
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIV 176
+D G Y C A N+ G D+ + R+ V
Sbjct: 62 PEDEGTYECEAENIKGKDKHQARVYV 87
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 9e-06
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNV 164
++ C+ E P P+ W K+G I +++ N L IS V +D+G Y+C A N
Sbjct: 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61
Query: 165 HGMDESKGRLIV 176
G+DE L V
Sbjct: 62 AGVDEDISSLFV 73
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 9e-06
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70
CEA G P TY W RNG ++ E RY + D L I + +D YQC A N
Sbjct: 26 CEARGNPVPTYRWLRNGTEID-----TESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN 80
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-05
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 104 GGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G T+ C P+P W DG +I + R +++NG L I + D+G ++C A+
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60
Query: 163 NVHGMDESKGRL 174
N G E+ +
Sbjct: 61 NAAG--EATATV 70
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-05
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNV 164
VT+ C+ + P+P + W +DG + G + L + DDSG+Y C A N
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60
Query: 165 HG 166
G
Sbjct: 61 FG 62
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77 |
| >gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKG 172
P P W KDG + GR +I E L+I R DSG Y+ T N G +
Sbjct: 12 PTPTVTWSKDGKPLKLSGRVQI-ETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70
Query: 173 RLIV 176
+ V
Sbjct: 71 NVKV 74
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 273
W +G L + + +GG L I+N D G+Y CV ++ G+ +
Sbjct: 34 WFKDGQ-----PLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88
Query: 274 IV 275
V
Sbjct: 89 TV 90
|
Length = 90 |
| >gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+++SWEP P + + Y++ +R++ + + TEYE
Sbjct: 17 VTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNV-----TPSSTSYTLTGLKPGTEYE 71
Query: 463 VKVQAINDVGPG 474
+V+A+N G G
Sbjct: 72 FRVRAVNGAGEG 83
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCT 160
G + C E P+P W+ +G I RR++ G L++S V +D+ +Y C
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD-GGTLILSNVQPNDTAVYQCN 59
Query: 161 ATNVHG 166
A+NVHG
Sbjct: 60 ASNVHG 65
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDG--NII------GSGGRRKIFENGNLLISPVSRDDSG 155
G VT C P+P W+K+G N++ S R + + G+L I+ V R D G
Sbjct: 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60
Query: 156 IYSCTATNVHGMDESKGRLIV 176
Y C NV G +K L V
Sbjct: 61 YYICQTLNVAGSILTKAYLEV 81
|
Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90 |
| >gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-05
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDS 154
T EGG TI C E +P PK W G I+ R E NL +S ++ +
Sbjct: 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ-TRTDTLETTVDIYNLQLSNITSETQ 68
Query: 155 GIYSCTATNVHGMDESK 171
+CTA N G
Sbjct: 69 TTVTCTAENPVGQANVS 85
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90 |
| >gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLIS-PVSR 151
P ES+ G V++ C +P P + W +G I R GNL+IS P
Sbjct: 14 PEESDE-----GKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKA 68
Query: 152 DDSGIYSCTATNVHGM 167
D+G Y C A+N+ G
Sbjct: 69 KDAGRYQCLASNIVGT 84
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91 |
| >gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 88 PSFKKRPLESETYAGEG---GNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGN 143
P F+++P S EG VT+ C A+P + WK +G I R GN
Sbjct: 2 PVFEEQP--SSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGN 59
Query: 144 LLIS-PVSRDDSGIYSCTATNVHG 166
L+I+ P D+G Y C A N G
Sbjct: 60 LVINNPQKARDAGSYQCLAINRCG 83
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94 |
| >gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQD-RY--------FIQDNVLTI 52
D +D C+A GVP V + W +NG +PL+ + RY + ++LTI
Sbjct: 21 DGSSDANLVCQAQGVPRVQFRWAKNG-------VPLDLGNPRYEETTEHTGTVHTSILTI 73
Query: 53 RYLNPERDPAMYQCRAKNQLKTRYSSAQL 81
++ D A++ C A N L QL
Sbjct: 74 INVSAALDYALFTCTAHNSLGEDSLDIQL 102
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the podocytes. Length = 109 |
| >gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 9e-05
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+ C A G P TY W NG + E RY + L I + +D YQC
Sbjct: 23 SLNCRARGSPPPTYRWLMNG-----TEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCL 77
Query: 68 AKNQLKTRYSS 78
A N + T S
Sbjct: 78 ASNIVGTVLSR 88
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 9e-05
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165
++ C P P W K+G+++ KI + NL + + + D G Y C A N
Sbjct: 1 DIVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDV 60
Query: 166 GMDESKGRLIV 176
G ++ +LI+
Sbjct: 61 GNVQAGAQLII 71
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 103 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
G +V+ C ++ +P VW + G + S NG L I V D+G Y CT
Sbjct: 15 PGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDF---NGILTIRNVQLSDAGTYVCTG 71
Query: 162 TNVHGMDESKGRLI 175
+N+ DE+ L
Sbjct: 72 SNMLDTDEATATLY 85
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 1e-04
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 117 PKPKFVWKKDGNIIGSGGR------RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
P +F W KDG + + R +N L I+ DSG Y+C N+ G D
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71
Query: 171 KGRL 174
+
Sbjct: 72 TANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 1e-04
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
L L+C A T E + + W +G + + L+I A AD+GEY
Sbjct: 1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYT 59
Query: 258 CVVKSTVGKISTKTTV 273
CVV++ +G + V
Sbjct: 60 CVVENILGNDTVTANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEF-QSETLKEYGNVGIAVVR--IPSEFYYT 459
L++SW P P N P Y++ +R N E + T+ G + P T
Sbjct: 16 LTLSWSPPPG---NGPITGYEVEYRPVNGGEEWKEITVP--GTTTSYTLTGLKP----GT 66
Query: 460 EYEVKVQAINDVGPGPES 477
EYEV+VQA+N G GP S
Sbjct: 67 EYEVRVQAVNGAGEGPPS 84
|
Length = 84 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 161
V + C A P P+ WKK+ ++ R N LLI +++D+G Y+ +A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 162 TNVHGMDESKGRLIV 176
N G+ RL V
Sbjct: 61 VNEAGVVSCNARLDV 75
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 95 LESETYAGEGGNVTIFCNPEAAPKPKFVWKK------------DGNIIGSGGRRKIFENG 142
LE++T A E +T+ C E P P+ W++ DG I+ G R
Sbjct: 8 LENQT-AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV----S 62
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMD 168
+L + V D+G Y C A+N G D
Sbjct: 63 SLTLKDVQLTDAGRYDCEASNRIGGD 88
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96 |
| >gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 91 KKRPLESETYAGEGGNV-TIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KIFENGN--- 143
K L G+G + + C + P+ +F W K+G + G R G
Sbjct: 9 KGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHT 68
Query: 144 --LLISPVSR-DDSGIYSCTATNVHGMDESKGRLIVLHGP 180
L I VS D +++CTA N G D +L+ P
Sbjct: 69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the podocytes. Length = 109 |
| >gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G N + C+P++ + VWK DG ++ + + LLI S D+G Y C
Sbjct: 11 GNNAELKCSPKSN-LARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQC 65
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloprotease-dependent process. Sem4D may mediate its effects in its membrane bound form, and/or its cleaved form. Length = 87 |
| >gnl|CDD|143204 cd05727, Ig2_Contactin-2-like, Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 4e-04
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 98 ETYAGEGGNVTIFCNPEA-APKPKFVWKKD--GNIIGSGGRRKIFE-NGNLLISPVSRDD 153
E EG V +FC+P P + W + N I GRR + + NGNL I+ V D
Sbjct: 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASD 71
Query: 154 SGIYSCTAT 162
G YSC +
Sbjct: 72 RGNYSCFVS 80
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 96 |
| >gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 7e-04
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTA 161
G + C E P P W +G I R+ +G L+++ V D+ +Y C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 162 TNVHG 166
N HG
Sbjct: 61 RNRHG 65
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76 |
| >gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 8e-04
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN---PERDPAMYQC 66
CEA G P T+SW RNG + E P L I +N E YQC
Sbjct: 4 KCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKP---DSGTLVIDNMNGGRAEDYEGEYQC 60
Query: 67 RAKNQLKTRYSS 78
A N+L T S+
Sbjct: 61 YASNELGTAISN 72
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77 |
| >gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 8e-04
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEY 256
L LRC E + + W NG IG + + L+I+ AS AD GEY
Sbjct: 1 LVLRCET-VSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEY 59
Query: 257 ECVVKSTVGKISTKTTV 273
+C+V S +G S V
Sbjct: 60 KCMVSSKLGNDSVTANV 76
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.001
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQD---RYFIQDNVLTIRYLNPERDPAMYQCR 67
CEA G+P T +W NG +P+E+ R + L + + P D A+YQC
Sbjct: 8 CEAEGIPQPTITWRLNG-------VPIEELPPDPRRRVDGGTLILSNVQP-NDTAVYQCN 59
Query: 68 AKNQLKTRYSSAQLRVL 84
A N ++A + V+
Sbjct: 60 ASNVHGYLLANAFVHVV 76
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.001
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 198 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
LQLRC DV I WT +GV++G E I G ++I +A D+G Y
Sbjct: 12 LQLRCRLRD----DVQSINWTKDGVQLG-------ENNRTRITGEEVQIKDAVPRDSGLY 60
Query: 257 ECVVKSTVGKISTKTTVIV 275
CV S G +T +V V
Sbjct: 61 ACVTSSPSGSDTTYFSVNV 79
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79 |
| >gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.001
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN---PERDPAMYQCR 67
CEA G P T+ W RNG+ N P R + L I + PE YQC
Sbjct: 5 CEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RSGTLVIDFSGGGRPEDYEGEYQCF 61
Query: 68 AKNQLKTRYSS 78
A+N L T S+
Sbjct: 62 ARNNLGTALSN 72
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
L+I N S D GEY C +++G +V VE
Sbjct: 38 LKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 37.3 bits (86), Expect = 0.001
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQ--DRYFIQDNVLTIRYLNPERDPAMYQ 65
T C A G PD +WF+ + LP++ R + + E D Y+
Sbjct: 2 TMLCAASGNPDPEITWFK-------DFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYE 54
Query: 66 CRAKNQLKTRYSS-AQLRV 83
C A N TRYS+ A L V
Sbjct: 55 CVATNSAGTRYSAPANLYV 73
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.001
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELL-------NSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
T C+A G P T W +NG+ L S + L +F++ + D
Sbjct: 20 TLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLR----VVHGRKGRSD 75
Query: 61 PAMYQCRAKNQLKT-RYSSAQLRV 83
+Y C A N L +A L V
Sbjct: 76 EGVYVCVAHNSLGEAVSRNASLEV 99
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.002
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNG-VRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
++ L CS +DV W G + + E + L I+N + D+G
Sbjct: 3 SVTLTCSVSGPPQVDV--TWFKEGKGLEESTTVGTDENRVSS---ITLTISNVTPEDSGT 57
Query: 256 YECVV 260
Y CVV
Sbjct: 58 YTCVV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 37.0 bits (85), Expect = 0.002
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ P ++ + + L CSA W NG G G L
Sbjct: 5 TVSPSPSVTSGGGVTLTCSA-EGGPPPPTISWYRNGSISGGSGGL-------GSSGSTLT 56
Query: 245 ITNASFADAGEYECVVKS 262
+++ + D+G Y CV +
Sbjct: 57 LSSVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI---QDNVLTIRYLNPERDPAMY 64
T C+A G P+ T +W ++GE P+E + + + +TI ++ D A Y
Sbjct: 22 TLACDADGFPEPTMTWTKDGE-------PIESGEEKYSFNEDGSEMTILDVDKL-DEAEY 73
Query: 65 QCRAKNQLKTRYSSAQLRV 83
C A+N+ + + L+V
Sbjct: 74 TCIAENKAGEQEAEIHLKV 92
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.002
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 108 TIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165
T+ C P P+ W KD + S GR K +G L I D G Y C ATN
Sbjct: 2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61
Query: 166 G 166
G
Sbjct: 62 G 62
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74 |
| >gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Score = 37.0 bits (85), Expect = 0.002
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 161
V + C P P+ WKK+ + R N LLI +++D+G Y+ +A
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 162 TNVHGMDESKGRLIV 176
N G+ RL V
Sbjct: 61 KNEAGIVSCTARLDV 75
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75 |
| >gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 96 ESETYAGEGGNVTIFCNPE------AAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISP 148
+ I C P+ P W KD ++ G RK F G+ LLI
Sbjct: 2 SYKQILFSTKGGKIVC-PDLDDFKNENTLPPVQWYKDCKLLE--GDRKRFVKGSKLLIQN 58
Query: 149 VSRDDSGIYSCTATNVH 165
V+ +D+G Y+C T H
Sbjct: 59 VTEEDAGNYTCKLTFTH 75
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 36.0 bits (83), Expect = 0.003
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEY 256
+Q+ CSA + + W +GV++ E+ +I G L I + AD G Y
Sbjct: 1 VQIPCSAQGDPEPTIT--WNKDGVQV-------TESGKFHISPEGYLAIRDVGVADQGRY 51
Query: 257 ECVVKSTVGKIST 269
ECV ++T+G S
Sbjct: 52 ECVARNTIGYASV 64
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 36.1 bits (83), Expect = 0.003
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF--IQDNVLTIRYLNPERDPAM 63
D+ + CE G P T W +NG+++ +P + YF ++++ L + L + D
Sbjct: 1 DIVFECEVTGKPTPTVKWVKNGDMV----IPSD----YFKIVKEHNLQVLGL-VKSDEGF 51
Query: 64 YQCRAKNQLKTRYSSAQL 81
YQC A+N + + AQL
Sbjct: 52 YQCIAENDVGNVQAGAQL 69
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 100 YAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII--GSGGRRKIFEN-------GNLLISPV 149
YA G + C + P P + VW N + GS GR + + L IS
Sbjct: 12 YAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNT 71
Query: 150 SRDD-SGIYSCTATNVHGMD 168
D Y+CTA N G
Sbjct: 72 QESDFQTSYNCTAWNSFGSG 91
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98 |
| >gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIV 176
GR I+ NG+LLI ++++DSG Y+ + +G+ + +K L V
Sbjct: 49 GRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain. Also belonging to this group is the N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84-like family. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. SLAM family proteins are organized as an extracellular domain with having two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region having tyr-based motifs. The extracellular domain is organized as a membrane-distal Ig variable (IgV) domain that is responsible for ligand recognition and a membrane-proximal truncated Ig constant-2 (IgC2) domain. Length = 92 |
| >gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Score = 36.5 bits (84), Expect = 0.004
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 95 LESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNL 144
L++ET E G T+ C E P P+ WK+ DG+ G GR ++ +L
Sbjct: 8 LKNET-TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSL 66
Query: 145 LISPVSRDDSGIYSCTA 161
I V DSG Y C A
Sbjct: 67 HIKDVKLSDSGRYDCEA 83
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.96 | |
| KOG4194|consensus | 873 | 99.96 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.87 | |
| KOG4194|consensus | 873 | 99.85 | ||
| KOG0196|consensus | 996 | 99.8 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.78 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.76 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.62 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.61 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.61 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.61 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.6 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.6 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.59 | |
| KOG3515|consensus | 741 | 99.59 | ||
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.59 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.59 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.58 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.57 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.57 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.56 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.56 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.55 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.55 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.55 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.54 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.54 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.53 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.53 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.53 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.53 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.53 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.52 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.52 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.52 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.51 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.51 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.51 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.51 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.51 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.51 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.5 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.5 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.49 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.49 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.48 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.48 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.48 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.48 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.48 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.48 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.48 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.48 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.48 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.47 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.47 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.47 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.47 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.47 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.46 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.46 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.46 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.46 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.46 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.45 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.45 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.45 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.44 | |
| KOG3515|consensus | 741 | 99.44 | ||
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.44 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.44 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.44 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.44 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.44 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.44 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.43 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.43 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.43 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.43 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.43 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.43 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.43 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.43 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.42 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.42 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.42 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.42 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.41 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.41 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.41 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 99.41 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.41 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.41 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.41 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.41 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.4 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.4 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.4 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.4 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.4 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.39 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.39 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.39 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.39 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.39 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.39 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.39 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.39 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.39 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.39 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.39 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.39 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.38 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.38 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.38 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.38 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.37 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.37 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.37 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.37 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.36 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.36 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.35 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.35 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.34 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.34 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.34 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.33 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.33 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.33 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.33 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.32 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.32 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.32 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.32 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.32 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.31 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.31 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.31 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.31 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.3 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.3 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.3 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.29 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.29 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.29 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.28 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.28 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.28 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.28 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.28 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.28 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.28 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.27 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.26 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.26 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.25 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.24 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.24 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.24 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.24 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.23 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.22 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.22 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.21 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.2 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.19 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.19 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.17 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.17 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.17 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.15 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.15 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.14 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.13 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.13 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.13 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.12 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 99.12 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.1 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.1 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.1 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.09 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.09 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.09 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.08 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.07 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.07 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.07 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.07 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 99.07 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.03 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.03 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.03 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.03 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 99.02 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.0 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.0 | |
| PF00041 | 85 | fn3: Fibronectin type III domain; InterPro: IPR003 | 98.96 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 98.96 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.94 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.93 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.91 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.89 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.89 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 98.87 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.87 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.87 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.87 | |
| KOG0196|consensus | 996 | 98.85 | ||
| smart00409 | 86 | IG Immunoglobulin. | 98.84 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.84 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.83 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.81 | |
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 98.79 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.78 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.77 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.77 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.75 | |
| PHA03376 | 221 | BARF1; Provisional | 98.75 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.75 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.74 | |
| KOG4802|consensus | 516 | 98.73 | ||
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 98.7 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.7 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.7 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.69 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.69 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.68 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.65 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.62 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.61 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.61 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.61 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.6 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.57 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.56 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.56 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.55 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.52 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.5 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.5 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.49 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.49 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.46 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.45 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.43 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.43 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.41 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.38 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.37 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.36 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.35 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.34 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.34 | |
| smart00060 | 83 | FN3 Fibronectin type 3 domain. One of three types | 98.33 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.31 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.31 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.31 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.31 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.29 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.29 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.29 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.29 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.28 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.25 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.25 | |
| PHA03376 | 221 | BARF1; Provisional | 98.25 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.24 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.24 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.24 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.23 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.23 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.23 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.22 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.21 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 98.18 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.16 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.12 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.11 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.11 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.11 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.1 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.08 | |
| cd00063 | 93 | FN3 Fibronectin type 3 domain; One of three types | 98.07 | |
| KOG4258|consensus | 1025 | 98.05 | ||
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.03 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.03 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.03 | |
| KOG4367|consensus | 699 | 98.0 | ||
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.0 | |
| KOG0613|consensus | 1205 | 98.0 | ||
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 97.99 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 97.99 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.98 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.96 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.96 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 97.95 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 97.95 | |
| KOG4152|consensus | 830 | 97.95 | ||
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 97.95 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 97.94 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.93 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.92 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.92 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 97.92 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 97.92 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.91 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 97.91 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 97.89 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 97.89 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 97.89 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.88 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.88 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.87 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 97.86 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 97.84 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 97.84 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.84 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.84 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 97.84 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.82 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 97.79 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 97.78 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.76 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.75 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.67 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 97.67 | |
| PF09294 | 106 | Interfer-bind: Interferon-alpha/beta receptor, fib | 97.66 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.64 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.63 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.62 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.62 | |
| PF01108 | 107 | Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH | 97.6 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.58 | |
| KOG4258|consensus | 1025 | 97.55 | ||
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.55 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.54 | |
| smart00060 | 83 | FN3 Fibronectin type 3 domain. One of three types | 97.53 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.53 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.48 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.47 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.46 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.46 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.45 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.43 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 97.39 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.36 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.34 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.34 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.34 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.32 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.29 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.28 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.27 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.23 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.22 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.21 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.2 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.19 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.17 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.17 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.17 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 97.12 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.12 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 97.11 | |
| PF09067 | 104 | EpoR_lig-bind: Erythropoietin receptor, ligand bin | 97.09 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.09 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.06 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.03 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 97.03 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.01 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 96.88 | |
| KOG1480|consensus | 909 | 96.86 | ||
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 96.8 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 96.8 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 96.8 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 96.64 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 96.61 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.61 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 96.61 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 96.46 | |
| PF10179 | 300 | DUF2369: Uncharacterised conserved protein (DUF236 | 96.32 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 96.29 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.1 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.05 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 95.9 | |
| PF01108 | 107 | Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH | 95.89 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 95.86 | |
| KOG1480|consensus | 909 | 95.85 | ||
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 95.78 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 95.72 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 95.71 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 95.68 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 95.6 | |
| KOG4597|consensus | 560 | 95.6 | ||
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 95.56 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 95.53 | |
| PF09067 | 104 | EpoR_lig-bind: Erythropoietin receptor, ligand bin | 95.31 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 95.08 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 95.05 | |
| KOG4367|consensus | 699 | 95.05 | ||
| KOG4228|consensus | 1087 | 94.68 | ||
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 94.63 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 94.15 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 93.6 | |
| PF10179 | 300 | DUF2369: Uncharacterised conserved protein (DUF236 | 93.27 | |
| COG3401 | 343 | Fibronectin type 3 domain-containing protein [Gene | 93.16 | |
| PLN02533 | 427 | probable purple acid phosphatase | 93.16 | |
| KOG4802|consensus | 516 | 92.89 | ||
| KOG3632|consensus | 1335 | 92.59 | ||
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.41 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.34 | |
| KOG4597|consensus | 560 | 92.07 | ||
| PF09240 | 99 | IL6Ra-bind: Interleukin-6 receptor alpha chain, bi | 91.61 | |
| KOG0613|consensus | 1205 | 91.41 | ||
| KOG4152|consensus | 830 | 91.23 | ||
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 89.48 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 89.29 | |
| PF07495 | 66 | Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi | 89.16 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 89.14 | |
| COG4733 | 952 | Phage-related protein, tail component [Function un | 88.77 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 87.97 | |
| PF09294 | 106 | Interfer-bind: Interferon-alpha/beta receptor, fib | 87.56 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 87.06 | |
| PF02010 | 440 | REJ: REJ domain; InterPro: IPR002859 The REJ (Rece | 86.97 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 86.74 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 85.81 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 84.61 | |
| PF02010 | 440 | REJ: REJ domain; InterPro: IPR002859 The REJ (Rece | 84.5 | |
| PF09423 | 453 | PhoD: PhoD-like phosphatase; InterPro: IPR018946 T | 84.07 | |
| KOG1026|consensus | 774 | 83.99 | ||
| COG3401 | 343 | Fibronectin type 3 domain-containing protein [Gene | 83.1 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 80.85 | |
| PF06832 | 89 | BiPBP_C: Penicillin-Binding Protein C-terminus Fam | 80.12 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-66 Score=494.39 Aligned_cols=482 Identities=38% Similarity=0.676 Sum_probs=424.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
..|++++|.|.+.|.|.+.|+|+|||.+|... ....++.+..+.|+|.+++ ..|+|.|.|.|.|..|...+++.|
T Consensus 344 ~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~----~r~~~~~i~~g~L~is~v~-~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 344 DTGSNVTLECKASGKPNPTVKWLKNGEPLEPA----ERDPRYKIDDGTLIISNVQ-ESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred cCCCCeEEEEEecCCCCCceEEeeCCeecCcc----CCCcceEEeCCEEEEEecc-cccCeEEEeeeecccceEeeeeEE
Confidence 57999999999999999999999999999832 1334588999999999999 999999999999999999999999
Q ss_pred EEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 82 ~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
.|.+.+|.|...+......+..|..+.|.|.+.+.|.+.+.|.++++.+..++++.+..+++|.|.+++++|+|.|+|.|
T Consensus 419 ~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A 498 (1051)
T KOG3513|consen 419 KVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVA 498 (1051)
T ss_pred EEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEE
Confidence 99998899999998888889999999999999999999999999988777889999999999999999999999999999
Q ss_pred EcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecC-
Q psy14886 162 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG- 240 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~- 240 (505)
.|..|.......|.|.+++.+.. .+....+..|+.+.|.|.+..++.+++.|.|.++|..+...... ..+...+
T Consensus 499 ~N~~G~a~~~~~L~Vkd~tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~----~~~~~~~~ 573 (1051)
T KOG3513|consen 499 ENKLGKAESTGNLIVKDATRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDG----DHFEINDG 573 (1051)
T ss_pred EcccCccceEEEEEEecCceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCC----CceEEeCC
Confidence 99999999999999988888776 67888899999999999999999999999999999988653211 1222222
Q ss_pred ---CeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEE
Q psy14886 241 ---GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR 317 (505)
Q Consensus 241 ---~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~ 317 (505)
+-|.|.++.+.|.|.|.|.|....-+.+....+.|+++|.||..+.+..+..+++.|+|.++.+++.||..|.++.+
T Consensus 574 ~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~r 653 (1051)
T KOG3513|consen 574 SDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFR 653 (1051)
T ss_pred cCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEec
Confidence 34999999999999999999987777788888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeec
Q psy14886 318 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397 (505)
Q Consensus 318 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~ 397 (505)
......|..+. .++. ...+..+....+ |.|...|+|||.|.|..|.|.+|.++..+.|.+++|...|.++....
T Consensus 654 t~~~~~W~~v~-~vp~----~~~~~~sa~vv~-L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g 727 (1051)
T KOG3513|consen 654 TPFPGKWKAVT-TVPG----NITGDESATVVN-LSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGG 727 (1051)
T ss_pred CCCCCcceEee-ECCC----cccCccceeEEc-cCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccC
Confidence 99999999987 3331 111223466777 99999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcCCC-CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
...+.+.|.|+|++....||+-.+|+|.|+..+.. .|....+.... ....++......|++-|++.|+|+|..|.|+.
T Consensus 728 ~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d-~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~ 806 (1051)
T KOG3513|consen 728 GSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQD-QPRYVVSNESTEPFTPYEVKVQAINDQGEGPE 806 (1051)
T ss_pred CCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccC-CceEEEcCCCCCCcceeEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999966 99988876643 34567777778889999999999999999999
Q ss_pred CceEEEeec------ceEEEEEEEeCceee
Q psy14886 477 SEVVTIWHD------PLVIISYVCQGDLKL 500 (505)
Q Consensus 477 s~~~~~~t~------p~~~~~~~~~~~~~~ 500 (505)
|+.+.+.+. +|......+.+.-.+
T Consensus 807 s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~ 836 (1051)
T KOG3513|consen 807 SQVTVGYSGEDEPPVAPTKLSAKPLSSSEV 836 (1051)
T ss_pred CceEEEEcCCCCCCCCCccceeecccCceE
Confidence 999999774 444444444444333
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=415.58 Aligned_cols=461 Identities=24% Similarity=0.352 Sum_probs=360.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~ 79 (505)
+..|+.+.|.|.+.+.|.+.+.|.||+.++.. ++..+...++.|.|.+++ ..|.|.|+|.+.+......+ .+
T Consensus 152 ~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~------~~r~i~lpsG~L~I~~~q-p~d~g~yrc~vt~g~~~r~S~~a 224 (1381)
T KOG4221|consen 152 LLYGQTALFSCEVNAEPVPTIMWLKNDQPLPL------DSRVIVLPSGALEISGLQ-PSDTGEYRCVVTGGASQRTSNEA 224 (1381)
T ss_pred EecCCcEEEEEEEcCccCceeEEecccccccC------CCcEEEcCCCcEEecccc-cCCCceEEEEEecCCcCCcccee
Confidence 35799999999999988889999999998873 333334578999999999 99999999999987655444 47
Q ss_pred EEEEEecCC-----CccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC-cEEEeeCCCEEEcCCCCCC
Q psy14886 80 QLRVLTLKP-----SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIFENGNLLISPVSRDD 153 (505)
Q Consensus 80 ~l~v~~~~p-----~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~-~~~~~~~~~l~i~~v~~~d 153 (505)
.|+|...+. .|... +....+.+|+++.|.|.+.+.|.|.|.|.+||..+..++ ++.+...+.|.|++++..|
T Consensus 225 ~ltv~s~~~~~~~~~fl~~--p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~d 302 (1381)
T KOG4221|consen 225 ELTVLSDPGALNKLVFLDE--PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDD 302 (1381)
T ss_pred EEEecCCcccccceeeecC--CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecccccc
Confidence 777773221 12233 355778999999999999999999999999999987654 3444446789999999999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
+|.|+|+|.|......+.+.|.|..+|.+... +.......+.++.|.|.+.+.|.+ ++.|+++|..+..+++.....
T Consensus 303 Sg~YtC~Atn~~D~idasaev~V~a~P~~~~~-p~~l~A~e~~die~ec~~~g~p~p--~v~w~kNgd~~ipsdy~ki~~ 379 (1381)
T KOG4221|consen 303 SGKYTCRATNTNDSIDASAEVTVLAPPGFTKA-PTTLVAHESMDIEFECPVSGKPIP--TVRWYKNGDRIIPSDYFKIVG 379 (1381)
T ss_pred CceEEEEecCCCcccccceEEEEEcCCCCCCC-CcceeeeeccceeEeCCCCCCCcc--eEEEEecCcccCcccceEecC
Confidence 99999999998888888899999888877654 455666778999999999998655 667999988776654321100
Q ss_pred C---eeee------------------------------c-----------------------------------------
Q psy14886 234 P---NINI------------------------------D----------------------------------------- 239 (505)
Q Consensus 234 ~---~~~~------------------------------~----------------------------------------- 239 (505)
. .... .
T Consensus 380 ~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~ 459 (1381)
T KOG4221|consen 380 GGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNIS 459 (1381)
T ss_pred CCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcc
Confidence 0 0000 0
Q ss_pred ----------------------CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEE
Q psy14886 240 ----------------------GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 297 (505)
Q Consensus 240 ----------------------~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l 297 (505)
+-...+.++.....+.+.|.|.|..|....+..|.|..+|+.|..+.....+...+.+
T Consensus 460 ~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v 539 (1381)
T KOG4221|consen 460 TYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILV 539 (1381)
T ss_pred eEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEE
Confidence 0112233333444444555556777777777777777777777667778888999999
Q ss_pred EeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCC
Q psy14886 298 QWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377 (505)
Q Consensus 298 ~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 377 (505)
.|++|..++++|++|.+.|...+.+.|.....+ ..++.+.+ |.+++.|.|+|.|.|+.|.|..|...
T Consensus 540 ~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n-----------~~e~ti~g-L~k~TeY~~~vvA~N~~G~g~sS~~i- 606 (1381)
T KOG4221|consen 540 TWEPPPFGNGPITGYKLFYSEDDTGKELRVENN-----------ATEYTING-LEKYTEYSIRVVAYNSAGSGVSSADI- 606 (1381)
T ss_pred EecCCCCCCCCceEEEEEEEcCCCCceEEEecC-----------ccEEEeec-CCCccceEEEEEEecCCCCCCCCCce-
Confidence 999999999999999999998877777776443 23555665 99999999999999999999877765
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
.+.|..+.|..||.|+++...++++|.|.|.+|++...+|.|++|+|+|+...... .....+.. ..+.+.+.+|+
T Consensus 607 ~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~----n~~~~l~~~Le 682 (1381)
T KOG4221|consen 607 TVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKG----NTTQYLFNGLE 682 (1381)
T ss_pred EEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeeccc----chhhhHhhcCC
Confidence 89999999999999999999999999999999999999999999999999776332 22222222 34567888899
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecceEEE
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDPLVII 490 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~~~~ 490 (505)
|++.|.|||.|.|..|.|++|+++.+.|+-....
T Consensus 683 p~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~ 716 (1381)
T KOG4221|consen 683 PNTQYRVRISAMTVNGTGPASEWVSAETPESDLD 716 (1381)
T ss_pred CCceEEEEEEEeccCCCCCcccceeccCcccccc
Confidence 9999999999999999999999999988644433
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-51 Score=392.90 Aligned_cols=455 Identities=22% Similarity=0.319 Sum_probs=340.2
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCE-ECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~-~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
..|+.|.|.|.+.|+|.|+|.|.|.+. ++. ...++...+.+|.|.+++ .+|+|.|+|.|.|..|.......
T Consensus 254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~-------~r~~~~~~~~vL~I~nv~-~~D~G~Y~C~AeN~~G~~~~~~~ 325 (1051)
T KOG3513|consen 254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPP-------RRATYSNYGKVLKIPNVQ-YEDAGEYECIAENSRGSATHSGH 325 (1051)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEeCCCCCCC-------cceeeeccccEEEecccC-cCCCeEEEEEEecccccceeeEE
Confidence 379999999999999999999999776 444 334445567899999999 99999999999999998888999
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCc--EEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
+.|.+ +|.+...+ .+..+..|+++++.|.+.|.|.|.++|++||.++....+ .....+++|.|.+++..|+|.|.
T Consensus 326 v~v~a-~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 326 VTVYA-PPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQ 402 (1051)
T ss_pred EEEec-Cchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEE
Confidence 99996 88887765 567789999999999999999999999999999986554 12335889999999999999999
Q ss_pred EEEEcCCCceeeeEEEEEEeC-CeeeeeCCC-ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCee
Q psy14886 159 CTATNVHGMDESKGRLIVLHG-PSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236 (505)
Q Consensus 159 C~~~~~~g~~~~~~~l~v~~~-p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 236 (505)
|.|.|..|...+.+.|.|... |.+...... ...+..|..+.|.|...+.|.+ .+.|.+++..+..+. ...
T Consensus 403 C~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~~~~~~------r~~ 474 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP--KVSWLKGGEKLLQSG------RIR 474 (1051)
T ss_pred eeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc--eEEEEcCCcccccCc------eEE
Confidence 999999999999999999886 444433322 2467789999999999998765 566999887444322 233
Q ss_pred eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceE-EEEEeCCeEEEEeecCCCCCCCCceEEEE
Q psy14886 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKII 315 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~-~~~~~~~~v~l~w~~~~~~~~~i~~y~v~ 315 (505)
...+++|.|.+++.+|.|.|+|.|.|..|.......|.|..++.....+. .....+.+++|.|+..-+.... ..|.+.
T Consensus 475 i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld-~~f~W~ 553 (1051)
T KOG3513|consen 475 ILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLD-ITFTWK 553 (1051)
T ss_pred ECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcc-eEEEEE
Confidence 34678999999999999999999999999999999999987664322111 1234567899999865433332 233333
Q ss_pred EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeee
Q psy14886 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 395 (505)
Q Consensus 316 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~ 395 (505)
.. ...|........... ..-.....+++.+ +.-.+.+.|.|.|...+-.. +. ........||+||..+.+
T Consensus 554 ~n---G~~id~~~~~~~~~~-~~~~~~g~L~i~n-v~l~~~G~Y~C~aqT~~Ds~--s~---~A~l~V~gpPgpP~~v~~ 623 (1051)
T KOG3513|consen 554 KN---GRPIDFNPDGDHFEI-NDGSDSGRLTIAN-VSLEDSGKYTCVAQTALDSA--SA---RADLLVRGPPGPPPDVHV 623 (1051)
T ss_pred EC---CEEhhccCCCCceEE-eCCcCccceEEEe-eccccCceEEEEEEEeecch--hc---ccceEEecCCCCCCceeE
Confidence 21 111111111000000 0000112344444 66666666666666533221 11 222335677788889999
Q ss_pred eccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCcee-eEEEEcCCccceeeEEEEEEEecCCCCC
Q psy14886 396 GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPG 474 (505)
Q Consensus 396 ~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~p~~~Y~~~v~a~n~~G~g 474 (505)
.+.+.+++.|+|++ +.+.+++|..|.|+.+..-...|..+. ..+.+.+ ....++.+|.|.+.|+|||.|+|..|.|
T Consensus 624 ~~i~~t~~~lsW~~--g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~g 700 (1051)
T KOG3513|consen 624 DDISDTTARLSWSP--GSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIG 700 (1051)
T ss_pred eeeccceEEEEeec--CCCCCCCceEEeEEecCCCCCcceEee-ECCCcccCccceeEEccCCCcceEEEEEEEcccccC
Confidence 99999999999998 777779999999999998899999887 4444333 1235577899999999999999999999
Q ss_pred CCCceEEEeecceEE
Q psy14886 475 PESEVVTIWHDPLVI 489 (505)
Q Consensus 475 ~~s~~~~~~t~p~~~ 489 (505)
++|.+.....++++.
T Consensus 701 ePS~pS~~~rT~ea~ 715 (1051)
T KOG3513|consen 701 EPSPPSEKVRTPEAA 715 (1051)
T ss_pred CCCCCccceecCCCC
Confidence 999998876655444
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=344.43 Aligned_cols=463 Identities=24% Similarity=0.378 Sum_probs=349.6
Q ss_pred CCCCceEEEEEEecc--CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCC-----CCCeEEEEEEEcc-cC
Q psy14886 2 DNQADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-----RDPAMYQCRAKNQ-LK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~-----~d~G~Y~C~~~~~-~~ 73 (505)
.+|..+.|.|..... +.+.|.|.|||..+... .+..+-.+.+++|.|.++. . -|.|.|+|.|.-. .|
T Consensus 52 ~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~----~d~~~~~LsNgSl~i~~v~-~~kh~~~~eg~Yqc~atv~~~g 126 (1381)
T KOG4221|consen 52 MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEV----YDDRRQLLSNGSLYISSVL-ASKHNKVDEGVYQCLATVEDVG 126 (1381)
T ss_pred ccccceEEeccccccCCCCeeEEEccCchhhhhh----hhhHHhhccCCceeEeeec-ccccccccCceEEEEEEccccc
Confidence 478899999998543 47899999999877632 1234445688999999998 6 7899999999865 44
Q ss_pred ceEe-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 74 TRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 74 ~~~~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
..-+ .+.|.+.. .+.|...+ .+..+..|+++.|.|.+++.|.+.+.|.++..++..++++....++.|.|.+++.+
T Consensus 127 si~Sr~a~v~~a~-~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~ 203 (1381)
T KOG4221|consen 127 SILSRTAKVALAG-LADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPS 203 (1381)
T ss_pred eeecceEEEEecc-cCccccCc--cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccC
Confidence 4433 45666664 55565555 34568899999999999998888999999999888777888889999999999999
Q ss_pred CCEEEEEEEEcCCCce-eeeEEEEEEeCCee-----eeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 153 DSGIYSCTATNVHGMD-ESKGRLIVLHGPSY-----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~-~~~~~l~v~~~p~~-----~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
|.|.|+|.+.+..... +..+.|.|...|.. ....+....+..|+.+.|.|.+.+.+.|. +.|.++|..+...
T Consensus 204 d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~--v~Wlrng~~i~~d 281 (1381)
T KOG4221|consen 204 DTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS--VKWLRNGEKISVD 281 (1381)
T ss_pred CCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc--eEEeeCCeeeeec
Confidence 9999999999875433 33477777633321 12335566788999999999999998875 5599999998764
Q ss_pred CCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC--------------------------
Q psy14886 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG-------------------------- 280 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~-------------------------- 280 (505)
. ........+.|.|.+++..|+|.|+|.|.|..-.......|.|+.+|.
T Consensus 282 s-----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p 356 (1381)
T KOG4221|consen 282 S-----YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKP 356 (1381)
T ss_pred c-----eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCC
Confidence 3 122233467899999999999999999998444444444454543321
Q ss_pred -------------------------------------------------------------------------CCCceEE
Q psy14886 281 -------------------------------------------------------------------------LPGGVQV 287 (505)
Q Consensus 281 -------------------------------------------------------------------------~p~~~~~ 287 (505)
.|..+.+
T Consensus 357 ~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~ 436 (1381)
T KOG4221|consen 357 IPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVA 436 (1381)
T ss_pred cceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceec
Confidence 1222333
Q ss_pred EEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCC
Q psy14886 288 VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL 367 (505)
Q Consensus 288 ~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~ 367 (505)
...+...+.++|.+|...++++..|.+.|...... |.+...... ++ ....+.+ |.+.+.|.|+|.|.|..
T Consensus 437 ~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~-rer~~~tss-------~g-~~~tv~n-l~p~t~Y~~rv~A~n~~ 506 (1381)
T KOG4221|consen 437 NLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDV-RERLQNTSS-------PG-IQVTVQN-LSPLTMYFFRVRAKNEA 506 (1381)
T ss_pred ccccceeEEEeecCccccCCCcceEEEEEecCCch-hhhheeccC-------Cc-eEEEeee-cccceeEEEEEeccCcc
Confidence 33445578999998887788999999988876432 322211100 12 4566677 99999999999999999
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.+.++.+. .+.+.++ +|+. +++......++.+.|++ |..+|++|++|+|.|.+.+.+.|.......
T Consensus 507 g~g~sS~pL-kV~t~pE---gp~~-~~a~ats~~ti~v~Wep--P~~~n~~I~~yk~~ys~~~~~~~~~~~~n~------ 573 (1381)
T KOG4221|consen 507 GSGESSAPL-KVTTQPE---GPVQ-LQAYATSPTTILVTWEP--PPFGNGPITGYKLFYSEDDTGKELRVENNA------ 573 (1381)
T ss_pred cCCccCCce-EEecCCC---CCcc-ccccccCcceEEEEecC--CCCCCCCceEEEEEEEcCCCCceEEEecCc------
Confidence 999988876 5665555 3444 88888889999999998 678999999999999999877777555443
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeec------ceEEEEEEEeCceeeee
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD------PLVIISYVCQGDLKLCL 502 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~------p~~~~~~~~~~~~~~~~ 502 (505)
..++|++|+|.|.|.|+|.|+|++|.|..|..+.+.|. ||-...+.-.+...|++
T Consensus 574 ~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrV 634 (1381)
T KOG4221|consen 574 TEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRV 634 (1381)
T ss_pred cEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEE
Confidence 78899999999999999999999999999999999884 55545555456666654
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=306.74 Aligned_cols=459 Identities=27% Similarity=0.387 Sum_probs=356.1
Q ss_pred CCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eE
Q psy14886 2 DNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~ 79 (505)
-.|+.+.|.|.- .+.|.+.+.|.|+|+++... ....+..+.++.|.|.+++ ..|+|.|.|.+.|..|..++ .+
T Consensus 144 a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~----~~~~~~lisgG~LlIsnvr-ksD~GtY~CVatNmvG~ReS~~A 218 (1281)
T KOG4222|consen 144 AVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHY----DVPIIALISGGNLLISNVR-KSDEGTYACVATNMVGERESIPA 218 (1281)
T ss_pred cccceeEEeccCCCCCCCCcceeecCCCccccc----cceeEEEecCCcEEEeccc-cCCCceeeeeecccccccccccc
Confidence 468999999997 46889999999999998721 1233445689999999999 99999999999999998777 48
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC-CCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~-~~l~i~~v~~~d~G~y~ 158 (505)
.|.|.+ +|.|...+ ....+..|..+.+.|.+.|.|.+.+.|.+++..+.. .++.+..+ .+|.|.+++..|.|.|.
T Consensus 219 ~lsv~e-~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~qtl~i~r~tp~deg~y~ 294 (1281)
T KOG4222|consen 219 RLSVQE-KPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR-SRYSILDDTQTLRIDRVTPTDEGTYV 294 (1281)
T ss_pred eeeecc-CCcccccc--ccceeecccccccccccCCCCCCceeeeccCCCCCc-cceeeeeccccccccccCCCccccee
Confidence 899996 78887766 456788999999999999999999999997766654 44555544 89999999999999999
Q ss_pred EEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC---cccCCe
Q psy14886 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN---ELETPN 235 (505)
Q Consensus 159 C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~ 235 (505)
|.+.|..|.......++|+.+|.+... +....+..|..++|.|.+.++|.|.+. |.+.|......... ......
T Consensus 295 C~a~n~vG~l~asa~ltV~apP~f~kk-p~dq~v~lg~~vt~pc~~~gnP~Pavf--W~keg~q~llf~~~p~~~~~r~s 371 (1281)
T KOG4222|consen 295 CPAENLVGGLEASATLTVQAPPSFGKK-PRDQKVALGGTVTFPCETLGNPPPAVF--WLKEGSQDLLFSASPPSSNGRGS 371 (1281)
T ss_pred eeccccccccccccceEEecCcccccc-cCccccccCceEEeeeecCCCCCcceE--EeccCcceecccCCCCCcCccce
Confidence 999999999999999999988887654 445667788899999999999988765 77755432221100 000000
Q ss_pred e-------------------------------------------------------------------------------
Q psy14886 236 I------------------------------------------------------------------------------- 236 (505)
Q Consensus 236 ~------------------------------------------------------------------------------- 236 (505)
.
T Consensus 372 vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~ 451 (1281)
T KOG4222|consen 372 VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPN 451 (1281)
T ss_pred ecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCC
Confidence 0
Q ss_pred ------------------eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC---------------CCCCCC
Q psy14886 237 ------------------NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG---------------PPGLPG 283 (505)
Q Consensus 237 ------------------~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~---------------~p~~p~ 283 (505)
......+++..+...|.|.|+|.+.+..|+..-+..+.|.+ .|.+|.
T Consensus 452 i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~ 531 (1281)
T KOG4222|consen 452 ISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPG 531 (1281)
T ss_pred chhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCC
Confidence 00025788888889999999999999999988888887743 356677
Q ss_pred ceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeC-CCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEE
Q psy14886 284 GVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTN-WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 361 (505)
Q Consensus 284 ~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v 361 (505)
...+..+..++++|+|.+... +..|+..|.+++... ....|......+. .....|.+ |.|...|.|.|
T Consensus 532 ~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~---------~t~~~I~g-L~P~~sylf~v 601 (1281)
T KOG4222|consen 532 TPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVK---------TTTYAIRG-LKPNLSYLFLV 601 (1281)
T ss_pred CCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccc---------cceeeecC-cCccceeeeee
Confidence 778888999999999998875 557889899986544 3577887655442 34555565 99999999999
Q ss_pred EEEcCCCcCCCCC-------------------------------------------------------------------
Q psy14886 362 IAGNELGYGEPSS------------------------------------------------------------------- 374 (505)
Q Consensus 362 ~a~n~~G~~~~s~------------------------------------------------------------------- 374 (505)
+|.|..|.+.++.
T Consensus 602 Ra~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r 681 (1281)
T KOG4222|consen 602 RAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYR 681 (1281)
T ss_pred eccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEec
Confidence 9999999874333
Q ss_pred ----------------------------------------------------CCCCccCCCCCCCCCCce---eeeeccc
Q psy14886 375 ----------------------------------------------------PSPQYNTPADKPYQAPSR---IGGGGGK 399 (505)
Q Consensus 375 ----------------------------------------------------~~~~~~t~~~~p~~~P~~---~~~~~~~ 399 (505)
....+.+.+..|+.+|.. ++....+
T Consensus 682 ~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n 761 (1281)
T KOG4222|consen 682 SLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYN 761 (1281)
T ss_pred cCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCC
Confidence 122345567788888888 4555667
Q ss_pred cccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCce
Q psy14886 400 IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479 (505)
Q Consensus 400 ~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~ 479 (505)
.+.+.|+|.++|.+..++++.+|.|+...-... ........+......+|.+|.++..|.|+|.|.|.+|.|+.++.
T Consensus 762 ~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~t---r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p 838 (1281)
T KOG4222|consen 762 GTAGSVSWAPPPADVQNGILQGYKIECSGGEKT---RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPP 838 (1281)
T ss_pred CceeeEEecCCcccccCCcccceeEEeecCccc---cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCC
Confidence 889999999998889999999999988654422 12222233345567788999999999999999999999998877
Q ss_pred EEEeec
Q psy14886 480 VTIWHD 485 (505)
Q Consensus 480 ~~~~t~ 485 (505)
....+.
T Consensus 839 ~~~~~~ 844 (1281)
T KOG4222|consen 839 QPIVFD 844 (1281)
T ss_pred eeeecC
Confidence 666443
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=304.40 Aligned_cols=465 Identities=23% Similarity=0.355 Sum_probs=328.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCC----CCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN----PERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~----~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|+.|+.++|.|.++|.|.++|+|+|+|++..... ....|+.+..++|.+..+- ...|.|.|+|.+.|..|...
T Consensus 43 vs~~~patlnc~asG~ppPti~w~k~G~~~~~~e---~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~av 119 (1281)
T KOG4222|consen 43 VSKGEPATLNCKASGDPPPTIEWYKDGENVFKGE---PGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAV 119 (1281)
T ss_pred ccCCCCceeecCCCCCCCCceecccCCcccCCCC---CCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceee
Confidence 4678999999999999999999999997554322 2456777777777765432 02389999999999998876
Q ss_pred e-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEec--CCCcEEEeeCCCEEEcCCCCC
Q psy14886 77 S-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 77 ~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~--~~~~~~~~~~~~l~i~~v~~~ 152 (505)
+ .+.|.+..+.-.|.+.+.. +.+..|+.+.|+|.- .+.|.+.+.|.|+|+++. ....+.+...+.|.|.++...
T Consensus 120 Sr~a~L~vavlrddfrv~prd--~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrks 197 (1281)
T KOG4222|consen 120 SRGASLIVAVLRDDFRVSPRD--VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKS 197 (1281)
T ss_pred ecCceEEEEEechhcccCccc--ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccC
Confidence 6 5777777767788887743 778899999999984 667889999999999886 455666778999999999999
Q ss_pred CCEEEEEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc
Q psy14886 153 DSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 231 (505)
|.|.|.|.++|..|..++. ++|.|+.+|.+... +....+..|..+.+.|.+.++|.|.+. |.+++..+....
T Consensus 198 D~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vr--wkk~~~~~P~~r---- 270 (1281)
T KOG4222|consen 198 DEGTYACVATNMVGERESIPARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVR--WKKDDPSLPRSR---- 270 (1281)
T ss_pred CCceeeeeecccccccccccceeeeccCCccccc-cccceeecccccccccccCCCCCCcee--eeccCCCCCccc----
Confidence 9999999999999988887 89999888887754 567788899999999999999988766 555554544322
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceE-------------EEEEeCCeEEEE
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-------------VVEVHKTSATIQ 298 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~-------------~~~~~~~~v~l~ 298 (505)
.....+..++.|......|.|.|.|.+.|..|..+....++|+.+|..-.... +...+...-.+.
T Consensus 271 --y~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 271 --YSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred --eeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceE
Confidence 23334457899999999999999999999999999999999988775321111 111122222222
Q ss_pred ee-----------cCC-CCC-CC---------------CceEEEE-----------------------------------
Q psy14886 299 WT-----------DGA-TNG-RP---------------ITHYKII----------------------------------- 315 (505)
Q Consensus 299 w~-----------~~~-~~~-~~---------------i~~y~v~----------------------------------- 315 (505)
|. .+. .++ +- -.+|.+.
T Consensus 349 W~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~ 428 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPA 428 (1281)
T ss_pred EeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeeccc
Confidence 22 111 000 00 0011111
Q ss_pred -----------------EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCC
Q psy14886 316 -----------------ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378 (505)
Q Consensus 316 -----------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~ 378 (505)
+++.....|......+..................||.-.+.|.|.|.|.+..|.+.+|.....
T Consensus 429 nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v 508 (1281)
T KOG4222|consen 429 NQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTV 508 (1281)
T ss_pred ccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEh
Confidence 111112223222211111110000011122334448888999999999999999887764311
Q ss_pred cc----------CCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceee
Q psy14886 379 YN----------TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGI 447 (505)
Q Consensus 379 ~~----------t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~ 447 (505)
-. ..+...+.+|....+...+.++++|.|.+. ...+.+++++|.++|..-+ ...|..+- .....
T Consensus 509 ~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~-s~sg~vP~s~yiieafs~~~~etw~~ta----~~v~~ 583 (1281)
T KOG4222|consen 509 EKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPT-SPSGAVPASGYIIEAFSPDLGETWQTTA----GRVKT 583 (1281)
T ss_pred hhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCC-CCCCccccchhHHHHhhhhhcccccccc----ccccc
Confidence 11 112233456666667778899999999983 3357889999999998766 66677433 33466
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
+.+.|.+|+|++.|.|.|+|.|..|-|.+|......+
T Consensus 584 t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vr 620 (1281)
T KOG4222|consen 584 TTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVR 620 (1281)
T ss_pred ceeeecCcCccceeeeeeeccccccccCCcccCCccc
Confidence 8999999999999999999999999999887776533
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-27 Score=211.54 Aligned_cols=251 Identities=18% Similarity=0.276 Sum_probs=178.3
Q ss_pred CCCCceEEEEEE-----eccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEA-----FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~-----~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|+.+.|.|.+ .|.|.+.++|+|+|.... ...... +..|.|.++. .+|+|.|+|.+.|..+..
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---------~~~~~~~g~~l~i~~~~-~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNILDILWEKRGADND---------RIIPIDNGSNMLILNPT-QSDSGIYICITKNETYCD 108 (326)
T ss_pred hcCCCEEEECCCccccccCCCCceEEEEECCCccc---------eEEEccCCceEEEcccC-cccCeEEEEEEECCCcce
Confidence 479999999997 578889999999975322 122232 3458899999 999999999999998888
Q ss_pred EeeEEEEEEecCC-CccCCCCCceEEeeCCCeEEEEee-----cCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCC
Q psy14886 76 YSSAQLRVLTLKP-SFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPV 149 (505)
Q Consensus 76 ~~~~~l~v~~~~p-~~~~~~~~~~~~v~~g~~v~l~C~-----~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v 149 (505)
..++.|.|....+ .+.... ....+.+|..+.|.|. ..+.|.+.+.|+++.. + ...++....++.|.|.++
T Consensus 109 ~~s~~L~V~~~~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~~L~i~~v 184 (326)
T PHA02785 109 MMSLNLTIVSVSESNIDLIS--YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPGIITIEDV 184 (326)
T ss_pred EEEEEEEEEecCCCccceee--ccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCCeEEEeec
Confidence 8888888875432 232222 2234679999999997 2356788999988653 2 334555555678999999
Q ss_pred CCCCCEEEEEEEEcCCCceeee----EEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCC-CeEEEEEeCCEE
Q psy14886 150 SRDDSGIYSCTATNVHGMDESK----GRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVR 222 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~~~~----~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~~ 222 (505)
+.+|.|.|+|.+.|..|..... +.|.|.. .|+.. ..+....+..|..+.|.|.+.+.|.+ ...+.|.++|..
T Consensus 185 ~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~ 263 (326)
T PHA02785 185 RKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMY 263 (326)
T ss_pred ChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEE
Confidence 9999999999999988765433 3454532 22222 23456677789999999999998753 246789999988
Q ss_pred ecCCCCCcccC-----C-----eeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 223 IGNMDLNELET-----P-----NINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 223 ~~~~~~~~~~~-----~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
+...+....+. . ........|.|..+..+|.|.|+|.|.|..|..
T Consensus 264 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 264 YEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 75421110000 0 001113579999999999999999999987543
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=215.42 Aligned_cols=262 Identities=26% Similarity=0.461 Sum_probs=204.7
Q ss_pred CCCceEEEEEEec--cCCCeEEEEECCEECcCCCCCCCCCCcEEE------------ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 3 NQADLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFI------------QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 3 ~G~~~~l~C~~~~--~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~------------~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
.|++++|+|.+.+ ..+..+.|.++++.+.... +.+..++.. -.+.|++.+|. ..|+|.|+|.+
T Consensus 517 ~g~nirftC~a~sssasplsi~WR~dnevq~rv~--ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt-~td~grYQCVv 593 (873)
T KOG4194|consen 517 IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD--VEDFATFLSQNRNGTFGEREEYTAILHLDNVT-FTDEGRYQCVV 593 (873)
T ss_pred hccceEEEEEeccCCCCCceeEeeeccccCcccc--hhcchhhhhhhccCccchhhhhhheeeeeeee-cccCceEEEEE
Confidence 5899999999976 3468899999887443221 111222211 12579999999 99999999999
Q ss_pred EcccCceEe-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEE-ecC--CCcEEEe-eCCC
Q psy14886 69 KNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI-IGS--GGRRKIF-ENGN 143 (505)
Q Consensus 69 ~~~~~~~~~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~-~~~--~~~~~~~-~~~~ 143 (505)
.|.+|...+ .+.+.|.. .|.|...| .+..+..|+.+.|.|.+.|.|.|+|.|.|+|.. ... ..|..+. .+..
T Consensus 594 tN~FGStysqk~KltV~~-~PsFtktP--~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~ 670 (873)
T KOG4194|consen 594 TNHFGSTYSQKAKLTVNQ-APSFTKTP--EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDV 670 (873)
T ss_pred ecccCcchhheeEEEeec-cCccccCc--ccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCE
Confidence 999999877 68899995 78888887 567789999999999999999999999998765 322 2233333 3556
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 144 l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
+.|.+|..+|+|.|+|.|.|..|.....+.|+|.+.|.+..+ -....+..|+.+.|.|.+.+.+. +.+..|+++.+++
T Consensus 671 f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~~a-~pr~~W~k~d~pi 748 (873)
T KOG4194|consen 671 FFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGAPA-DPRLEWFKEDKPI 748 (873)
T ss_pred EEEecccccccceeEEeeeccccceeeceEEEEecCCccccc-ccceEEEecceEEEEEecCCCCC-CccccccCCCCce
Confidence 999999999999999999999999999999999998887654 45677899999999999998875 2466799988887
Q ss_pred cCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 224 GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
..... -.+...+..+.+.....+|.|.|+|...+..|.--..+.+.+..
T Consensus 749 l~t~r-----h~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 749 LITER-----HTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred EEeec-----ccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 65321 12233445677888889999999999999999876666665543
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=158.90 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=115.8
Q ss_pred CCCCCceEEEEEEeccC-----------CCeEEEEECCEEC--cCC-C---CCCCCCCcEEEECCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVP-----------DVTYSWFRNGELL--NSE-T---LPLEDQDRYFIQDNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----------~~~~~W~~~~~~l--~~~-~---~~~~~~~~~~~~~~~L~i~~~~~~~d~G~ 63 (505)
+.+|+++.|.|.+.+.| ...+.|+|++... ... . .......++...+++|.|.+++ .+|+|.
T Consensus 34 v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~-~~DsG~ 112 (227)
T PHA02826 34 AKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVI-NIDEGI 112 (227)
T ss_pred ecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCC-hHHCEE
Confidence 46999999999987643 4589999997642 100 0 0000112222236799999999 999999
Q ss_pred EEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecCCCcEEE
Q psy14886 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSGGRRKI 138 (505)
Q Consensus 64 Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~~~~~~~ 138 (505)
|+|.|.|..+.....+.|.|.. +. ....+.+|+++.|.|.+.+ .|.|+++|+|+|+++..+.+..+
T Consensus 113 Y~C~a~N~~~~~~~~i~L~V~~--~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~ 183 (227)
T PHA02826 113 YICTISSGNICEESTIRLTFDS--GT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQL 183 (227)
T ss_pred EEEEEEECCcceEEEEEEEEec--CC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEE
Confidence 9999999888877777777752 11 2245778999999999753 35789999999999876666655
Q ss_pred eeC-CCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 139 FEN-GNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 139 ~~~-~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
..+ ++|.|.+++.+|+|.|+|.|....+
T Consensus 184 ~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 184 RNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred eCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 433 4799999999999999999987543
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=168.52 Aligned_cols=172 Identities=24% Similarity=0.435 Sum_probs=141.0
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEE-CcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGEL-LNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~-l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
..|+.+.|.|.++|.|.|+|.|.|+|.. .++ ....|..+ .++.+.|.+++ .+|.|.|+|.|.|.+|....+
T Consensus 625 ~tg~mArl~CaAtG~P~PeIawqkdggtdFPA-----A~eRRl~Vmpedd~f~Itnvk-~eD~GiYtC~A~n~AG~isan 698 (873)
T KOG4194|consen 625 RTGQMARLECAATGHPRPEIAWQKDGGTDFPA-----ARERRLHVMPEDDVFFITNVK-IEDQGIYTCTAQNVAGQISAN 698 (873)
T ss_pred ecccceeeeeeccCCCCcceeehhcCCCCCch-----hhhheeeecCCCCEEEEeccc-ccccceeEEeeeccccceeec
Confidence 5689999999999999999999998764 332 23445554 56789999999 999999999999999999999
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEecCCCcEEEeeCC-CEEEcCCCCCCCEE
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGI 156 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~-~l~i~~v~~~d~G~ 156 (505)
+++.|.+ .|.+..+. .+..|..|+++.|.|.+.+.|. |.+.|+|+++++.-..+.....+. -|.+.+...+|.|.
T Consensus 699 AtL~V~e-~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~ 775 (873)
T KOG4194|consen 699 ATLTVLE-TPSFSIPL--EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGI 775 (873)
T ss_pred eEEEEec-CCcccccc--cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcce
Confidence 9999997 66666554 3356889999999999999986 899999999888655554444333 47788888999999
Q ss_pred EEEEEEcCCCceeeeEEEEEEeCCee
Q psy14886 157 YSCTATNVHGMDESKGRLIVLHGPSY 182 (505)
Q Consensus 157 y~C~~~~~~g~~~~~~~l~v~~~p~~ 182 (505)
|+|...+..|.....+.+.+...+..
T Consensus 776 yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 776 YTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred EEEEEEeeccceeeEEEEEEeecCCc
Confidence 99999999998888877777665544
|
|
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=159.29 Aligned_cols=203 Identities=21% Similarity=0.238 Sum_probs=146.6
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCC-CCceEEEEEEeCCC--CCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~-~i~~y~v~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
..||++|.++... +.++++.|+|.+|.+.|+ .-..|.+..+.-+. +.-..+..++.......- -.......++|.
T Consensus 329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~g-Lt~~~V~v~~L~ 406 (996)
T KOG0196|consen 329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRG-LTETSVTVSDLL 406 (996)
T ss_pred CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCC-cccceEEEeccc
Confidence 4678888887765 899999999999997654 44678887664432 222223322221111111 123344455599
Q ss_pred CCceeEEEEEEEcCCCcCCCCC---CCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSS---PSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~---~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~ 429 (505)
+.+.|+|.|.|.|....-.+.. ....+.|..+.|+ +...++......++|+|+|.. ++..+|.|+.|+|.|.+.
T Consensus 407 ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~--p~~png~ildYEvky~ek 483 (996)
T KOG0196|consen 407 AHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSE--PDQPNGVILDYEVKYYEK 483 (996)
T ss_pred cccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCC--CCCCCCcceeEEEEEeec
Confidence 9999999999999976533332 2234555555554 556788888999999999998 778889999999999998
Q ss_pred CCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 430 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
+..+........ ..+..+|.+|.|++.|.|+|+|.+.+|.|++|..+.+.|.++
T Consensus 484 ~~~e~~~~~~~t----~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 484 DEDERSYSTLKT----KTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cccccceeEEec----ccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 744333333333 336778999999999999999999999999999999999988
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=142.76 Aligned_cols=190 Identities=22% Similarity=0.280 Sum_probs=127.3
Q ss_pred EeeCCCeEEEEeec-----CCCCCCeEEEEECCEEecCCCcEEEeeCC-CEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 100 YAGEGGNVTIFCNP-----EAAPKPKFVWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 100 ~v~~g~~v~l~C~~-----~~~p~~~i~W~~~g~~~~~~~~~~~~~~~-~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
.+.+|+.+.|.|.+ .|.|.+++.|+|+|... .+.....++ .|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 45689999999997 68888899999987532 122223334 4889999999999999999999988888888
Q ss_pred EEEEeCCe-eeeeCCCceEEEeeccEEEEEEe-----eecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEec
Q psy14886 174 LIVLHGPS-YYEQLPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247 (505)
Q Consensus 174 l~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 247 (505)
|.|....+ ..........+..|..+.|.|.. .+++ .+.+.|+++.. +... ......++.|.|.+
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~--~~~i~W~k~~~-~~~~-------r~~~~~~~~L~i~~ 183 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNV--NADIIWSGHRR-LRNK-------RLKQRTPGIITIED 183 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCC--CceEEEccCCc-cCCc-------ceEecCCCeEEEee
Confidence 88865322 11111223446688899999972 2333 45677977542 2111 11122346899999
Q ss_pred CCCCCCEEEEEEEEecCCcEEE----EEEEEEcCCCCCCC---ceEEEEEeCCeEEEEeecC
Q psy14886 248 ASFADAGEYECVVKSTVGKIST----KTTVIVEGPPGLPG---GVQVVEVHKTSATIQWTDG 302 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g~~~~----~~~l~v~~~p~~p~---~~~~~~~~~~~v~l~w~~~ 302 (505)
++.+|.|.|+|.|.|..|.... .+.|.|..+..+|. ........+..+.|.|..-
T Consensus 184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~ 245 (326)
T PHA02785 184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVS 245 (326)
T ss_pred cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEE
Confidence 9999999999999998886543 34555654333331 1122334477899999853
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=134.35 Aligned_cols=155 Identities=24% Similarity=0.374 Sum_probs=113.8
Q ss_pred eEEeeCCCeEEEEeecCCCC-----------CCeEEEEECCEEe--cC-CCc--------EE-EeeCCCEEEcCCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP-----------KPKFVWKKDGNII--GS-GGR--------RK-IFENGNLLISPVSRDDS 154 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p-----------~~~i~W~~~g~~~--~~-~~~--------~~-~~~~~~l~i~~v~~~d~ 154 (505)
...+.+|+++.|.|.+.+.+ ...+.|+|++... .. +.+ .. ...++.|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 35688999999999987744 3489999987652 11 111 01 12245899999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecC---CCCeEEEEEeCCEEecCCCCCcc
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE---LLDVAYIWTHNGVRIGNMDLNEL 231 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~ 231 (505)
|.|+|.|.|..+.....+.|.|...+ ....+..|+.+.|.|.+.+.+ .|..++.|++++..+.....
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r--- 180 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR--- 180 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC---
Confidence 99999999988887777888874321 234567899999999986542 23457889999998864321
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
......+..|.|.+++.+|+|.|+|.|....
T Consensus 181 --~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 181 --IQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred --EEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 1222345689999999999999999997754
|
|
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=102.26 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
|++++|.|.+.|.|.+.|+|+|++..+. ...++.+ .+++|.|.+++ .+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-------~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV-------NNSRISIWDDGSLEILNIT-KLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc-------cCCCEEEcCCCEEEECcCC-hhHCEEEEEEEECCCCceeEEEEEE
Confidence 7899999999999999999999998775 3456766 56899999999 9999999999999999998888876
Q ss_pred E
Q psy14886 83 V 83 (505)
Q Consensus 83 v 83 (505)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=102.80 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=63.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
||+++.|.|.+.|.|.+.|.|+|++..+.. ..++. ..+++|.|.+++ .+|+|.|+|.|.|..|.....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-------DRRHLVLSSGTLRISRVA-LHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCC-------CCCeEEccCCeEEEeeCC-HHhCEEEEEEEEeCCCceeEEEEE
Confidence 799999999999999999999999998863 23333 356799999999 999999999999999998888877
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 65
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-15 Score=106.62 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=75.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
....+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+.. ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 45678999999999999999999999999999998666665543 346999999999999999999999999999999
Q ss_pred EEEEeCCe
Q psy14886 174 LIVLHGPS 181 (505)
Q Consensus 174 l~v~~~p~ 181 (505)
|.|.+.|.
T Consensus 88 l~V~~~P~ 95 (98)
T cd05762 88 LTVVDKPD 95 (98)
T ss_pred EEEecCCC
Confidence 99988764
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=100.84 Aligned_cols=73 Identities=42% Similarity=0.778 Sum_probs=66.9
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|++.|+|++..+..+.++.+..+++|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999999887777888877889999999999999999999999999998887764
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-15 Score=101.59 Aligned_cols=74 Identities=32% Similarity=0.663 Sum_probs=66.5
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+|+++.|.|.+.|.|.|.+.|+++|..+....+.....+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999999999999999999887666666666788999999999999999999999999988887764
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-15 Score=105.26 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=65.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.++|+|++.++. ...++...++.|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 13 ~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~-------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~~ 84 (88)
T cd05851 13 ALKGQNVTLECFALGNPVPVIRWRKILEPMP-------ATAEISMSGAVLKIFNIQ-PEDEGTYECEAENIKGKDKHQAR 84 (88)
T ss_pred EeCCCcEEEEEEecccCCCEEEEEECCcCCC-------CCCEEecCCCEEEECcCC-hhhCEEEEEEEEcCCCceEEEEE
Confidence 3589999999999999999999999998775 234555667899999999 99999999999999999888888
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 85 l~V 87 (88)
T cd05851 85 VYV 87 (88)
T ss_pred EEE
Confidence 776
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=100.18 Aligned_cols=75 Identities=23% Similarity=0.464 Sum_probs=65.3
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
|++++|.|.+.|.|.+.++|+|+|.++.... ...++...+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~----~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTD----PDPRRHVSSGALILTDVQ-PSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCC----CCceEEeeCCEEEECCCC-hhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999886421 223566678899999999 99999999999999999988888876
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=130.98 Aligned_cols=414 Identities=15% Similarity=0.127 Sum_probs=239.5
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcCC-CCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee-
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNSE-TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS- 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~-~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~- 78 (505)
..|+...+.|...+ +|...+.|+|+....... ...........+..-.+...... ..|.|.|+|.+.+......++
T Consensus 313 s~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~-~~~~g~v~c~a~~~~~~~~sss 391 (741)
T KOG3515|consen 313 SSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS-QQDGGQVTCPADNLELAHSSSS 391 (741)
T ss_pred ccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc-hhcCceEEcccccccccccccc
Confidence 46788889998754 788999999965544321 11111112222222345666777 889999999999877554443
Q ss_pred -EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEecCCC--cEEEeeCC-CEEEcCCCCCC
Q psy14886 79 -AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGG--RRKIFENG-NLLISPVSRDD 153 (505)
Q Consensus 79 -~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~~--~~~~~~~~-~l~i~~v~~~d 153 (505)
..+.+.. +|.+...- .......+++.....-.+.++| .+.+.|.+++-.+.... .+.+.... .....++.+.|
T Consensus 392 ~~~l~~l~-~p~~L~~~-~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d 469 (741)
T KOG3515|consen 392 SFLLPVLP-SPAFLVRH-KTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSD 469 (741)
T ss_pred ceeccccC-Cchhhhhc-ccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeecc
Confidence 3344442 34333322 2334455555554444444554 55999999888776433 23333333 24466789999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
.|.|.|.+.|+.|.......+.+...|..... ........++++...|.....+...--+.|.+.+..... .......
T Consensus 470 ~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~-~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~-~~~~~~~ 547 (741)
T KOG3515|consen 470 GGSYGLTATNSPGGAQAYLLLGVHTSPHNHHL-QDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSD-QIDQDAP 547 (741)
T ss_pred CCcceeeeccCCCceeeEEeeccccCCccccc-ccccccCCCCcccceeeccccccchhhhcccccCCCCcc-ccccccc
Confidence 99999999999998888777667665554332 223344556678899998887765555668776655432 1111111
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC---CCCceEEEEEeCCeEEEEeecCCCCCCCCc
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG---LPGGVQVVEVHKTSATIQWTDGATNGRPIT 310 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~---~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~ 310 (505)
.........+.+........+.|.|.+.+..........+.+...+. .+..+.....+...++.+|. -.+.+..
T Consensus 548 ~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~---a~~~~~~ 624 (741)
T KOG3515|consen 548 QQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCV---ASGVPST 624 (741)
T ss_pred ccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccccccce---ecccccc
Confidence 22223345566666666678999999988222233334444433221 11122222222224444442 1233333
Q ss_pred eEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCC
Q psy14886 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390 (505)
Q Consensus 311 ~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P 390 (505)
.|.....+.....-........ . .......+..+.+ -.++..|.+.|.+.|.+|.+..+... ....-+..|
T Consensus 625 ~~~~~k~p~~~~~~~~~~~~~~--~-~~~~~s~~~~~~~-~~~~~~y~~~c~t~n~lg~~~v~~~~-----~~~t~~~~~ 695 (741)
T KOG3515|consen 625 SFTTAKTPLQTTEGPHIREKAT--Q-QGQTHSSSEWILN-HIDGSDYENGCTTQNLLGSDHVSGAI-----HSGTASVGP 695 (741)
T ss_pred eeecccCCCcccCCceEEEeee--e-ccccccccccccC-CcchhhhcceeeecccCCCcccccee-----cCCcCCCCc
Confidence 3433322221100000000000 0 0011222334444 77888999999999999998766542 244555688
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcE
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ 435 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~ 435 (505)
.|+.........|.|.|.| ...+|-.+.|.+.|...+...++
T Consensus 696 ~n~~~~~~~~~~i~l~~~p---~fdgg~~q~f~~~~~~~~~~~~~ 737 (741)
T KOG3515|consen 696 INLTYDNLTYSTISLEWMP---GFDGGLQQRFFLKYYDLGTMKLH 737 (741)
T ss_pred cceEeeeeeeeeeceeeee---ccccccccceeeehhhcCCceeE
Confidence 9999988889999999997 45567778999999887755433
|
|
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=103.54 Aligned_cols=87 Identities=28% Similarity=0.470 Sum_probs=71.8
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+|.+...+ .+..+.+|+.+.|.|.+.|.|.|.++|++++..+....+.. ..++.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 1 PADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS-MSGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CCceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe-cCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 35555554 44668899999999999999999999999998776544333 2355799999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy14886 167 MDESKGRLIV 176 (505)
Q Consensus 167 ~~~~~~~l~v 176 (505)
.....+.|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd05851 78 KDKHQARVYV 87 (88)
T ss_pred ceEEEEEEEE
Confidence 9988888876
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=105.80 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=68.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|+.++|.|.+.|.|.+.+.|+|++.+|.. ..++.+. .+.|.|.++. .+|+|.|+|.+.|..|...
T Consensus 12 v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~-------~~~~~~~~~~~~s~L~I~~~~-~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 12 VRAGESVELFCKVTGTQPITCTWMKFRKQIQE-------GEGIKIENTENSSKLTITEGQ-QEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred EECCCEEEEEEEEcccCCCceEEEECCEEecC-------CCcEEEEecCCeeEEEECCCC-hhhCEEEEEEEEcCCCcee
Confidence 46899999999999999999999999999973 3344442 5689999999 9999999999999999999
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 84 ~~~~l~V~~ 92 (98)
T cd05762 84 AQVNLTVVD 92 (98)
T ss_pred EEEEEEEec
Confidence 999999986
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=102.56 Aligned_cols=75 Identities=39% Similarity=0.686 Sum_probs=67.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.+.|+|++.++. ...++...++.|.|.+++ .+|+|.|+|.|.|..|....++.
T Consensus 11 ~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-------~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 11 ADIGSSLRWECKASGNPRPAYRWLKNGQPLA-------SENRIEVEAGDLRITKLS-LSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred EcCCCcEEEEEEeeEeCCCEEEEEECCEECC-------CCCeEEEeCCEEEEeeCC-HHHCEEEEEEEECCCCeEEEEEE
Confidence 4689999999999999999999999999886 445777788999999999 99999999999999999888887
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 764
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=98.38 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=59.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--C-C--eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--D-N--VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--~-~--~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|.|.+.|.|.|.|.|+|++..+.. ...|+.+. + + +|.|.+++ .+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~------~~~r~~~~~~~~g~~~L~I~~~~-~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQY------NTDRISLYQDNSGRVTLLIKNVN-KKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcC------CCCeEEEEEcCCCcEEEEECCCC-hhhCEEEEEEEEcCcCeEEEEEEE
Confidence 57999999999999999999998863 23455542 2 2 79999999 999999999999999999888887
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 74 ~V 75 (75)
T cd05892 74 DV 75 (75)
T ss_pred eC
Confidence 65
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=104.61 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE--------ECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI--------QDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|.+|++++|.|.+.| .|++.+.|+|||.+|... ...... ..++|.|..++ .+|+|.|+|.|.|.
T Consensus 15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~------~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Ytc~A~N~ 87 (101)
T cd04975 15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK------LTEIVTSENESEYRYVSELKLVRLK-ESEAGTYTFLASNS 87 (101)
T ss_pred EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC------cceeEEEeccCcceEEEEEEEeecC-HhhCeeEEEEEECC
Confidence 468999999999999 889999999999999732 111211 13689999999 99999999999999
Q ss_pred cCceEeeEEEEEE
Q psy14886 72 LKTRYSSAQLRVL 84 (505)
Q Consensus 72 ~~~~~~~~~l~v~ 84 (505)
.|.....+.|.|.
T Consensus 88 ~G~~~~t~~L~V~ 100 (101)
T cd04975 88 DASKSLTFELYVN 100 (101)
T ss_pred CccEEEEEEEEEE
Confidence 9998888888775
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=97.82 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=59.5
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEEC-C----eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-N----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~-~----~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|.|.+.|.|.|.+.|+|++.++.. ...++.+.. . +|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~------~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH------NTDRVSMHQDNCGYICLLIQGAT-KEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC------CCCeEEEEEcCCCEEEEEECCCC-HHHCEEEEEEEEcCCCEEEEEEEE
Confidence 58999999999999999999998863 234565532 1 69999999 999999999999999999888887
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 74 ~V 75 (75)
T cd05893 74 DV 75 (75)
T ss_pred eC
Confidence 65
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=97.90 Aligned_cols=76 Identities=28% Similarity=0.456 Sum_probs=64.0
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
|++++|.|.+.|.|.++|+|+|+|+++.... ........++.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~----~~~~~~~~~~~l~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAP----TDPSRKVDGDTIIFSKVQ-ERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccC----CCceEEecCCEEEECCCC-HhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7899999999999999999999999886321 112233456789999999 99999999999999999999988887
Q ss_pred E
Q psy14886 84 L 84 (505)
Q Consensus 84 ~ 84 (505)
.
T Consensus 76 ~ 76 (76)
T cd05868 76 L 76 (76)
T ss_pred C
Confidence 3
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=101.31 Aligned_cols=91 Identities=32% Similarity=0.562 Sum_probs=73.9
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeC-CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFEN-GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~-~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
||.+..........+..|+++.|.|.+.|.|.+.+.|+++|..+... .++....+ ..|.|.++..+|.|.|+|.|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 34454444445567899999999999999999999999999988654 34443333 35999999999999999999999
Q ss_pred CCceeeeEEEEEE
Q psy14886 165 HGMDESKGRLIVL 177 (505)
Q Consensus 165 ~g~~~~~~~l~v~ 177 (505)
.|.....+.|.|.
T Consensus 81 ~G~~~~~~~L~V~ 93 (95)
T cd05730 81 AGEQEAEIHLKVF 93 (95)
T ss_pred CCeEEEEEEEEEE
Confidence 9999888888875
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=96.33 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=61.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
+.|.|.+.|.|.+.+.|+|+|.++.. ..++...+.+|.|.+++ .+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~-------~~~~~~~~~~L~I~~v~-~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISE-------KNRTKKSGHSLTIKDVT-EEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC-------CCEEEcCCCEEEECcCC-HHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 57999999999999999999999873 35666677899999999 999999999999999988777776664
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=102.41 Aligned_cols=75 Identities=28% Similarity=0.466 Sum_probs=62.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--E---CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--Q---DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~---~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.|.|.+.+.|+|++.++.. ..++.+ . ..+|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 13 v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 13 IMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL-------SDHYNVKVEQGKYASLTIKGVS-SEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred EeCCCcEEEEEEEEecCCCeEEEEECCEECcc-------CCCEEEEEcCCCEEEEEEccCC-hhhCEEEEEEEEECCCcc
Confidence 46899999999999999999999999998873 233333 2 2379999999 999999999999999988
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 85 ~~~~~v~v 92 (92)
T cd05737 85 TVDVTVSV 92 (92)
T ss_pred eEEEEEeC
Confidence 87777654
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-14 Score=99.91 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|+.+.|.|.+.|.|.|.+.|+|++.++... ..++.+. .+.|.|.++. .+|+|.|+|.|.|..|...
T Consensus 7 v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~------~~r~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 7 VVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET------EGRVRVESYKDLSSFVIEGAE-REDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEcCCEEEEEeeEeecCCCeEEEEECCEECccC------CCeEEEEEcCCeEEEEECCCc-cCcCEEEEEEEEeCCCcEE
Confidence 468999999999999999999999999998732 2345442 3689999999 9999999999999999988
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
..+.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 7777764
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=93.38 Aligned_cols=66 Identities=15% Similarity=0.348 Sum_probs=56.8
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
++|.|.+.|.|.|.++|+|||++|... ...+.|.|.++. .+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----------~~~~~L~i~~v~-~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----------HSQHSLQIKDVT-EASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----------CCcCEEEECCCC-HHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999998621 135699999999 999999999999999987777766654
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-14 Score=102.19 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEee--------CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFE--------NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~--------~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
..+.+.+|+++.|.|.+.| .|.|.+.|+|+|.++.......+.. ...|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4577899999999999999 8899999999999997544433322 246999999999999999999999999
Q ss_pred eeeeEEEEEE
Q psy14886 168 DESKGRLIVL 177 (505)
Q Consensus 168 ~~~~~~l~v~ 177 (505)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888888874
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=94.58 Aligned_cols=70 Identities=33% Similarity=0.608 Sum_probs=60.0
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
+++|.|.+.|.|.+.++|+|++..+.. ..++.+ ..+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~-------~~~~~~~~~~~l~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIP-------SDYFKIVKEHNLQVLGLV-KSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCC-------CCCEEEEecCCEEEEcCC-cccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 589999999999999999999998862 334443 56789999999 99999999999999999888887764
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=98.92 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=64.4
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--------CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--------DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|+.++|.|.+.|.|++.+.|+|++..+.. ...++.+. .++|.|.++. .+|+|.|+|.|.|..|..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~------~~~r~~~~~~~~~~~~~s~L~I~~~~-~~D~G~YtC~A~N~~G~~ 73 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP------EMSRYLVSTKEVGDEVISTLQILPTV-REDSGFFSCHAINSYGED 73 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC------CCCcEEEEEecCCCcEEEEEEECCCC-cccCEEEEEEEEcCCCcc
Confidence 88999999999999999999999998863 12344332 1579999999 999999999999999999
Q ss_pred EeeEEEEEEe
Q psy14886 76 YSSAQLRVLT 85 (505)
Q Consensus 76 ~~~~~l~v~~ 85 (505)
...+.|.|..
T Consensus 74 ~~~~~L~V~~ 83 (88)
T cd05735 74 RGIIQLTVQE 83 (88)
T ss_pred eEEEEEEEeC
Confidence 9999999985
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=95.52 Aligned_cols=71 Identities=28% Similarity=0.554 Sum_probs=63.7
Q ss_pred eEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 106 ~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++.|.|.+.|.|.|.++|+++|..+....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999887766777777788999999999999999999999999988887764
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-14 Score=96.07 Aligned_cols=72 Identities=31% Similarity=0.492 Sum_probs=62.5
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
|+++.|.|.+.|.|.+.++|+|++..+. ...++.. ..++|.|.+++ .+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-------~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT-------NSSRICIWPDGSLEILNVT-KSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc-------cCCCEEECCCCeEEEccCC-hhHCEEEEEEEECCCCceEEEEEEE
Confidence 7899999999999999999999999886 2344544 45789999999 9999999999999999988888776
Q ss_pred E
Q psy14886 83 V 83 (505)
Q Consensus 83 v 83 (505)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 5
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.6e-14 Score=95.78 Aligned_cols=70 Identities=31% Similarity=0.638 Sum_probs=59.9
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecC-CCcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.|.|+|+|..+.. ..++.+..++ +|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999999874 3455554332 6999999999999999999999999999888765
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=95.55 Aligned_cols=73 Identities=41% Similarity=0.763 Sum_probs=66.3
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+.+.|.|.+.|.|.+.+.|++++..+....+.....+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999999988777777777788999999999999999999999999988887764
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=96.64 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=64.1
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
|++++|.|.+.|.|.+.|.|++++..+..... ..+.....+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPP----DPRRRVDGGTLILSNVQ-PNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCC----cceEEccCCEEEECCCC-hhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 78999999999999999999999998874211 11344467899999999 99999999999999999988888876
Q ss_pred E
Q psy14886 84 L 84 (505)
Q Consensus 84 ~ 84 (505)
.
T Consensus 76 ~ 76 (76)
T cd04978 76 V 76 (76)
T ss_pred C
Confidence 3
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=99.13 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=64.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.++|+|++..+. ...+....++.|.|.+++ .+|+|.|+|.+.|..|.....+.
T Consensus 13 ~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-------~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~ 84 (88)
T cd04968 13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMP-------SSAEISMSGAVLKIPNIQ-FEDEGTYECEAENIKGKDTHQGR 84 (88)
T ss_pred EeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-------CccEEEEeCCEEEECCCC-cccCEEEEEEEEECCCcEEEEEE
Confidence 3589999999999999999999999887664 233344577899999999 99999999999999999888888
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 85 l~V 87 (88)
T cd04968 85 IYV 87 (88)
T ss_pred EEE
Confidence 776
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=98.36 Aligned_cols=87 Identities=28% Similarity=0.505 Sum_probs=73.1
Q ss_pred cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEE
Q psy14886 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 86 ~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~ 162 (505)
++|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+... ++|.|.++..+|+|.|+|.|.
T Consensus 2 ~~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 2 LPATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 356666655 557899999999999999999999999999998876666655433 379999999999999999999
Q ss_pred cCCCceeeeEEE
Q psy14886 163 NVHGMDESKGRL 174 (505)
Q Consensus 163 ~~~g~~~~~~~l 174 (505)
|..|.....+.|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999988877665
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=96.67 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=62.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|+.++|.|.+.+. .+.+.|+|||.+|. ...++.+.+.+|.|.+++ .+|+|.|+|.+.|..|.....+.
T Consensus 6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~-------~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQLG-------ENNRTRITGEEVQIKDAV-PRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred ecCCCCEEEEEEecCC-CceEEEeeCCcCCC-------CCceEEEeCCEEEECCCC-hhhCEEEEEEEeCCCCcccEEEE
Confidence 4789999999999885 56899999999886 345677778899999999 99999999999998887666655
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 543
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=95.49 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=63.2
Q ss_pred CceEEEEEEecc--CCCeEEEEECCEECcCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 5 ADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 5 ~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+++.|.|.+.+. +++.|.|+|||++|... ....++.. ..+.|.|.+++ ..|+|.|+|.|.|..+....
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~----~~~~~~~~~~~~~~~~~L~I~nv~-~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQ----KDGDHFERVGGQDSAGDLMIRSIQ-LKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECccc----CCCccEEEeccCCCCCcEEEecCC-HHHCEEEEEEEEcccCceEE
Confidence 578999999774 47899999999999631 02335544 34689999999 99999999999999999999
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.|.|..
T Consensus 76 ~a~L~V~~ 83 (85)
T cd05853 76 AADLIVRG 83 (85)
T ss_pred EEEEEEec
Confidence 99999985
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=100.37 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCC-CCcE--EEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED-QDRY--FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~-~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
..|+.+.|.|.+.|+|.|.+.|+|||.+|......... .... ....++|.|.+++ .+|+|.|+|.|.|..|....+
T Consensus 16 ~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~-~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 16 NLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAK-EEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred ecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCC-HHHCEEEEEEEEcCCceEEEE
Confidence 56899999999999999999999999998742110000 0000 0123689999999 999999999999999998888
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 95 ~~l~V~ 100 (101)
T cd05859 95 FALQIQ 100 (101)
T ss_pred EEEEEE
Confidence 888775
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=92.24 Aligned_cols=68 Identities=29% Similarity=0.495 Sum_probs=56.6
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|++++|.|.+.|.|.|.|.|+|++.++.. ..++......|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~-------~~~~~~~~~~L~i~~~~---d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK-------EDEMPVGRNVLELTNIY---ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC-------ccceecCccEEEEeccc---cCeeEEEEEEeCCCEEEEEEEE
Confidence 78999999999999999999999998862 33444455679998866 7899999999999988777665
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=98.59 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=68.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC----CCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.+|+++.|.|.+.|.|.|++.|+++|..+....++.+... ..|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 456789999999999999999999999999999877666555322 2599999999999999999999999988877
Q ss_pred EEEE
Q psy14886 173 RLIV 176 (505)
Q Consensus 173 ~l~v 176 (505)
.+.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 6654
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=93.85 Aligned_cols=70 Identities=27% Similarity=0.421 Sum_probs=58.4
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-C----CeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-D----NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-~----~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|.|.+.|.|.|.+.|+|++..+.. ...++.+. . .+|.|.+++ .+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~------~~~r~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY------NTDRISLYQDNCGRICLLIQNAN-KEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC------CCCcEEEEEcCCCeEEEEECCCC-cccCEEEEEEEEcCCCcEEEEEEE
Confidence 58999999999999999999998863 22345442 2 169999999 999999999999999999888887
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 74 ~v 75 (75)
T cd05744 74 DV 75 (75)
T ss_pred eC
Confidence 64
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=93.84 Aligned_cols=73 Identities=27% Similarity=0.568 Sum_probs=62.7
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|+++|+++|..+.... ......++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6889999999999999999999999886432 123345678999999999999999999999999988888876
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=96.23 Aligned_cols=79 Identities=35% Similarity=0.638 Sum_probs=68.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+..+..|+++.|.|.+.|.|.|.+.|+++|..+....+... .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 446688999999999999999999999999999876655544 5678999999999999999999999999888877754
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=96.66 Aligned_cols=79 Identities=33% Similarity=0.598 Sum_probs=67.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 44568899999999999999999999999887665443332 45678999999999999999999999999988888876
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=97.19 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=63.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE--EECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|+.++|.|.+.|.|.+.+.|+|+|..+..... ...+. ....+|.|.+++ .+|+|.|+|.|.|..|.....
T Consensus 6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~----~~~~~~~~~~~~l~i~~~~-~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR----IGGYKVRNQHWSLIMESVV-PSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc----eeeeEEeCCceEEEEccCC-cccCEEEEEEEEeCCCEEEEE
Confidence 57899999999999999999999999999873211 11122 234579999999 999999999999999998888
Q ss_pred EEEEE
Q psy14886 79 AQLRV 83 (505)
Q Consensus 79 ~~l~v 83 (505)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 87765
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.3e-13 Score=93.90 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=67.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+... ..|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3467899999999999999999999999999988653 34544432 4699999999999999999999999988887
Q ss_pred EEEE
Q psy14886 173 RLIV 176 (505)
Q Consensus 173 ~l~v 176 (505)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7754
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=93.48 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=62.2
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCC--CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|+|+|+++|+++... .......++.|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999988532 2222334457999999999999999999999999999998877
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=91.07 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=56.4
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
++|.|.+.|.|.|.+.|+|++.++.. ...++...+.+|.|.+++ .+|+|.|+|.|.+..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~------~~~~~~~~~~~L~I~~v~-~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE------KCSRYHVDGYSLVIKDVT-EEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC------CCcEEEeCCCEEEECcCC-HHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999999999999999999873 224566667799999999 9999999999999876655544433
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=98.23 Aligned_cols=77 Identities=27% Similarity=0.543 Sum_probs=65.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
.+|+++.|.|.+.|.|.+.+.|+|+|..+... ..++.. .++.|.|.+++ .+|+|.|+|.|.|..|.....+
T Consensus 16 ~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~------~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 16 NLGQSVTLACDADGFPEPTMTWTKDGEPIESG------EEKYSFNEDGSEMTILDVD-KLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred eCCCCEEEEEeccEeCCCEEEEEECCEECcCC------CCEEEEeCCCCEEEECCCC-hhhCEEEEEEEEcCCCeEEEEE
Confidence 57999999999999999999999999988632 234433 34579999999 9999999999999999988888
Q ss_pred EEEEEe
Q psy14886 80 QLRVLT 85 (505)
Q Consensus 80 ~l~v~~ 85 (505)
.|.|..
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 888864
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=91.07 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=56.9
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
++|.|.+.|.|.+.++|+|||+++.. ..++ ..+..|.|.++. .+|+|.|+|.|.|..|.......+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~-------~~~~-~~~~~L~I~~v~-~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVL-------NHTF-KRGVHLTIYEVT-EKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC-------CCEE-ccCCEEEECcCC-HHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47999999999999999999999873 2222 235689999999 999999999999999987776665553
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=96.45 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=61.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS- 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~- 77 (505)
|++|++++|.|.+.|. .+.+.|+|++..+.. .++.+ .+++|.|.+++ .+|+|.|+|.|.|..|...+
T Consensus 15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~--------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP--------PRLQLSNDNRTLTFNNVT-RSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred cccCCcEEEEEEeCCC-CCEEEEEECCEECCC--------CCEEEeCCCCEEEECcCC-hhhCEEEEEEEEcCCCCEEee
Confidence 5789999999999999 999999999998762 23333 45689999999 99999999999999998766
Q ss_pred eEEEEE
Q psy14886 78 SAQLRV 83 (505)
Q Consensus 78 ~~~l~v 83 (505)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 455655
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-13 Score=94.21 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=62.0
Q ss_pred CceEEEEEEeccCCC--eEEEEECCEECcCCCCCCCCCCcE---EE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 5 ADLTWTCEAFGVPDV--TYSWFRNGELLNSETLPLEDQDRY---FI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 5 ~~~~l~C~~~~~p~~--~~~W~~~~~~l~~~~~~~~~~~~~---~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+.++|.|.+.|.|.+ .+.|+|||.++..... ..++ .. ..++|.|.+++ ..|+|.|+|.|.|..|....
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~----~~~~~~~~~~~~~~~L~I~~v~-~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP----NGHYRRMEVKETIGDLVIVNAQ-LSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCC----CCcEEEEEecceEeEEEEccCC-hhhCeEEEEEEecCCCCEEE
Confidence 578999999998865 6899999998863211 2232 21 34799999999 99999999999999999999
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.|.|..
T Consensus 76 ~~~L~V~~ 83 (85)
T cd05854 76 SATLVVRG 83 (85)
T ss_pred EEEEEEEC
Confidence 99999985
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=93.50 Aligned_cols=70 Identities=29% Similarity=0.581 Sum_probs=59.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.|.|+|++..+... .++.+..++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988653 455554443 5999999999999999999999999998888764
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-13 Score=96.79 Aligned_cols=76 Identities=25% Similarity=0.460 Sum_probs=60.7
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEE-CCEECcCCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEEEccc-
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFR-NGELLNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKNQL- 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~-~~~~l~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~~~- 72 (505)
+.+|+.++|.|.+.|.|. +.+.|++ ++..+.. ...++.+. .++|.|.+++ .+|+|.|+|.|.|..
T Consensus 12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~------~~~r~~v~~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP------NQQRISVVRNDDYSSTLTIYNAN-IDDAGIYKCVVSNEDE 84 (96)
T ss_pred ECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc------cCCeEEEEeCCCCceEEEEeccC-hhhCEEEEEEEEcCCC
Confidence 468999999999999984 7999998 7766652 13344432 2589999999 999999999999986
Q ss_pred CceEeeEEEEE
Q psy14886 73 KTRYSSAQLRV 83 (505)
Q Consensus 73 ~~~~~~~~l~v 83 (505)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 77777777765
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=92.12 Aligned_cols=67 Identities=27% Similarity=0.532 Sum_probs=57.8
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|.|.|.+.|.|.+.+.|+|++.++. ...++.+ .+++|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~-------~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT-------ESGKFHISPEGYLAIRDVG-VADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC-------CCCCEEECCCCEEEECcCC-hhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999886 3345555 46799999999 999999999999999998776655
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-13 Score=95.08 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=64.6
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 173 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~ 173 (505)
..+..+.+|++++|.|.+.|. .+.+.|++++..+... +..+. .+++|.|.+++.+|.|.|.|.|.|..|...+. +.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 345578999999999999999 9999999999987653 34433 34579999999999999999999999987654 55
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 655
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=92.39 Aligned_cols=68 Identities=34% Similarity=0.593 Sum_probs=61.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
|.|.|.+.|.|.|.+.|+++|..+....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999998877777777777889999999999999999999999998877655
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=92.10 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=58.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
+.|.|.+.|.|.+.+.|+|++..+... ..+....+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~------~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN------RTKKLNNNKTLQLDNVL-ESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC------ceeEEcCCCEEEEcccC-HHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 579999999999999999999876521 12233356799999999 99999999999999999888777766
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=95.17 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=66.0
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEee--C-----CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE--N-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~--~-----~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. . .+|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888643 3444332 1 3599999999999999999999999999999999
Q ss_pred EEeCCe
Q psy14886 176 VLHGPS 181 (505)
Q Consensus 176 v~~~p~ 181 (505)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 987654
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=97.09 Aligned_cols=80 Identities=24% Similarity=0.434 Sum_probs=64.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCC-CeEEEEE-CCEEecC-CCcEEEeeC----CCEEEcCCCCCCCEEEEEEEEcCC-Cce
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIGS-GGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVH-GMD 168 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~-~g~~~~~-~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~~~~-g~~ 168 (505)
....+..|++++|.|.+.|.|. |.+.|++ ++..+.. +.++....+ ++|.|.++..+|+|.|+|.|.|.. |..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~ 87 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGES 87 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcE
Confidence 3446889999999999999985 6999998 7876654 334444332 469999999999999999999996 888
Q ss_pred eeeEEEEE
Q psy14886 169 ESKGRLIV 176 (505)
Q Consensus 169 ~~~~~l~v 176 (505)
..++.|.|
T Consensus 88 ~~s~~l~v 95 (96)
T cd05865 88 EATVNVKI 95 (96)
T ss_pred EEEEEEEE
Confidence 88888776
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-13 Score=95.17 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE----EECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF----IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~----~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.++|.|.+.|.|.+.+.|++++..+... .+.. ....+|.|.+++ .+|.|.|+|.|.|..|...
T Consensus 12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-------~~~~~~~~~~~~~L~I~~v~-~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-------RTDTLETTVDIYNLQLSNIT-SETQTTVTCTAENPVGQAN 83 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-------ccEEEEecCCEEEEEEecCC-cccCEEEEEEEECCCCcee
Confidence 468999999999999999999999999987632 2211 123589999999 9999999999999999988
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
..+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8877754
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-13 Score=92.61 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=62.8
Q ss_pred CeEEEEeecCCC--CCCeEEEEECCEEecC--C-CcEEE----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 105 GNVTIFCNPEAA--PKPKFVWKKDGNIIGS--G-GRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 105 ~~v~l~C~~~~~--p~~~i~W~~~g~~~~~--~-~~~~~----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
+++.|.|.+.+. +.+.+.|++||+++.. . .++.. ...+.|.|.+++..|+|.|+|.|.|..+.....+.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999764 4779999999999962 2 24333 2346799999999999999999999999999999999
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 97665
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=97.66 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=63.8
Q ss_pred CCCCCceEEEEEEec-----cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFG-----VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.+.|.|.+.+ .|.+.|.|+|++.++.... ....|+...+++|.|.++. .+|+|.|+|.+.|..|..
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~---~~~~r~~~~~~~L~I~~~~-~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT---EERSRMHQQKDLLWFLPAA-LEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc---cccceeeecCCeEEEccCC-cccCeEEEEEEcCCCccE
Confidence 458999999999988 6888999999987654211 1234555567899999999 999999999999999998
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88777764
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=91.00 Aligned_cols=68 Identities=31% Similarity=0.458 Sum_probs=57.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.+.+.|+|++..+.. .++. ..+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~--------~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK--------GRAEILDDKSLKIRNVT-AGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC--------CcEEEeeCCEEEECcCC-hhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999876652 2333 356799999999 99999999999999999888777764
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=95.08 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=58.7
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+|+.++|.|.+.|.|.+.|+|+|+|.++... ...++...+++|.|.++...+|+|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~-----~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTE-----SDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccC-----CCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 5889999999999999999999999988632 223566677899999984269999999999999998755
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.9e-13 Score=91.95 Aligned_cols=73 Identities=30% Similarity=0.594 Sum_probs=63.0
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCc--EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+.+.|.|.+.|.|.|.+.|+++|..+..... ......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 68899999999999999999999998865432 23344578999999999999999999999999988888876
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=117.33 Aligned_cols=456 Identities=12% Similarity=0.054 Sum_probs=230.8
Q ss_pred CCCceEEEEEEe--ccCCCeEEEEECCEECcCCCCCCCC-----CCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 3 NQADLTWTCEAF--GVPDVTYSWFRNGELLNSETLPLED-----QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 3 ~G~~~~l~C~~~--~~p~~~~~W~~~~~~l~~~~~~~~~-----~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+..+.+.|.+. +.|.+++.|.+++............ .+......+.+.+...+ .++.|+|+|.+.+.....
T Consensus 111 ~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~R-ka~~g~~tC~A~nr~s~~ 189 (741)
T KOG3515|consen 111 DKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSR-KADNGNYTCPANNRNSPG 189 (741)
T ss_pred cCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEE-ecCCceeEcccccccCcc
Confidence 567899999664 4678999999988755433211111 11122345678899999 999999999998753332
Q ss_pred ---EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeC-----CCEEE
Q psy14886 76 ---YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLI 146 (505)
Q Consensus 76 ---~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~-----~~l~i 146 (505)
-....+.|......+..........+.+|+.+.|.|.+.+ .|.+.++|+++..............+ .++.+
T Consensus 190 l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~ 269 (741)
T KOG3515|consen 190 LSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVL 269 (741)
T ss_pred ccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccc
Confidence 2234444443333333333233345889999999998654 58889999998876654311111111 12333
Q ss_pred cCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
..-...+.-...|.+.| -......+.+..++..............|....+.|...+..+ ...+.|+++.......
T Consensus 270 ~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p-~~~i~w~~~~~~~~~~ 345 (741)
T KOG3515|consen 270 RVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKP-PAHIAWYKDTKMPKGS 345 (741)
T ss_pred cccccchhhhhhccccC---ccccceeeecccccccccccCcccccccccccccceeccCCCC-ccceeeeccCcccccc
Confidence 33333444466799987 1122233344344443333444455778889999997766433 4567798855444322
Q ss_pred CCCcccC-CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCC----ceEEEEEeCCeEEEEeec
Q psy14886 227 DLNELET-PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG----GVQVVEVHKTSATIQWTD 301 (505)
Q Consensus 227 ~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~----~~~~~~~~~~~v~l~w~~ 301 (505)
....... .......-.+.+......+.|.|+|.+.+.......+..+.+...|.+.. .+.+.....+...
T Consensus 346 ~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~----- 420 (741)
T KOG3515|consen 346 QKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQA----- 420 (741)
T ss_pred cCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCcccc-----
Confidence 1111111 11111112344555667889999999988776544443333332222211 1111111111111
Q ss_pred CCCCCCCCceEEEEEEeCCCCCeEEeeeccccceee---eecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCC
Q psy14886 302 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD---RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378 (505)
Q Consensus 302 ~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~ 378 (505)
.++..+ .+.......|+.....+...... .....-..-... +..-+...|.+.|.|+.|.......
T Consensus 421 -----~~~~~~--~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~-v~~~d~g~y~~tatns~gg~~~~~~--- 489 (741)
T KOG3515|consen 421 -----APLPVR--GAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVN-VSRSDGGSYGLTATNSPGGAQAYLL--- 489 (741)
T ss_pred -----ccCccc--CCCcccchhheecceecccccCceEEeeccccccccce-eeeccCCcceeeeccCCCceeeEEe---
Confidence 111111 11111122333322211100000 000000000111 3445567788899999887653221
Q ss_pred ccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCc----------------EEEEeeec
Q psy14886 379 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF----------------QSETLKEY 442 (505)
Q Consensus 379 ~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~----------------~~~~~~~~ 442 (505)
.-....|..-+.+..+.....++ .+-|.+ .+.+.....|..+++.....+. ........
T Consensus 490 -~~~~~sp~~~~~~~~~~~~~~ns-~~~~~~---q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 564 (741)
T KOG3515|consen 490 -LGVHTSPHNHHLQDQVEGATGNS-VDGECM---QDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSS 564 (741)
T ss_pred -eccccCCcccccccccccCCCCc-ccceee---ccccccchhhhcccccCCCCcccccccccccccCCccceeeccccc
Confidence 11223333333344444455556 344443 3444445566655555431110 11111111
Q ss_pred CceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 443 GNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 443 ~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
.-...+.+..+++.|-..|..++.|+-..+.......+....
T Consensus 565 ~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~ 606 (741)
T KOG3515|consen 565 LQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQ 606 (741)
T ss_pred ccccceEEeecCCCCccccceEEEecccccccccCCceeeec
Confidence 122345556666777788888888877766666555555443
|
|
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=91.03 Aligned_cols=70 Identities=33% Similarity=0.631 Sum_probs=56.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.+.++|+|+|.++... ..++.. ..++|.|.+++ .+|+|.|+|.|.|..|...++..+.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~------~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG------QGNYSVSSKERTLTLRSAG-PDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC------CccEEEeCCCCEEEEeeCC-cccCEEEEEEEEeCCCeEeeCceEEE
Confidence 589999999999999999999988632 223333 34689999999 99999999999999998765444433
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-13 Score=91.54 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=59.1
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|++++..+..........+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999988775543333345668999999999999999999999999888887776
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=91.03 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=58.9
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
.+.|.|.+.|.|.+.+.|+|+|..+. ...++.+. ...|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLK-------LSGRVQIETTASSTSLVIKNAE-RSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcC-------CCCeEEEEECCCeEEEEECCCC-cCcCEEEEEEEECCCccEEEEEEE
Confidence 47899999999999999999999985 23344432 4589999999 999999999999999998887777
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 73 ~V 74 (74)
T cd05748 73 KV 74 (74)
T ss_pred EC
Confidence 64
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-13 Score=88.70 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=56.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|+|..+... ...+.|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 479999999999999999999988632 12457999999999999999999999998877776665
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=90.76 Aligned_cols=70 Identities=30% Similarity=0.613 Sum_probs=59.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|++..+..+ .++.+...+ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999988743 455544332 5999999999999999999999999988887764
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-13 Score=96.34 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=67.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe---------eCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---------ENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~---------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
...+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+.+.... ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 456888999999999999999999999999998765433221 12469999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy14886 169 ESKGRLIVL 177 (505)
Q Consensus 169 ~~~~~l~v~ 177 (505)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=94.74 Aligned_cols=73 Identities=19% Similarity=0.388 Sum_probs=61.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.+.|.|.+.|.|.+.+.|+|+|..+. ...++.+. .++|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 15 ~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~ 86 (92)
T cd05747 15 VSEGESARFSCDVDGEPAPTVTWMREGQIIV-------SSQRHQITSTEYKSTFEISKVQ-MSDEGNYTVVVENSEGKQE 86 (92)
T ss_pred EeCCCcEEEEEEEeecCCCEEEEEECCEECC-------CCCcEEEEEcCCeeEEEECCCC-cccCEeEEEEEEcCCCCEe
Confidence 4689999999999999999999999999876 23344442 3589999999 9999999999999999877
Q ss_pred eeEEE
Q psy14886 77 SSAQL 81 (505)
Q Consensus 77 ~~~~l 81 (505)
..+.|
T Consensus 87 ~~~~l 91 (92)
T cd05747 87 AQFTL 91 (92)
T ss_pred EEEEe
Confidence 66654
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-13 Score=96.84 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=61.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|++++|.|.+.|.|.+.|.|+|+ +..+.... ....+|+.+. ..+|.|.+++ .+|+|.|+|.|.|..|.
T Consensus 13 ~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 13 TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVKGQHGESSLHIKDVK-LSDSGRYDCEAASRIGG 89 (98)
T ss_pred EcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEeecCCeeEEEEeeCC-cCCCEEEEEEEeccCCc
Confidence 46899999999999999999999994 44332110 0123455553 3589999999 99999999999999998
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
...++.|.|
T Consensus 90 ~~~~~~l~~ 98 (98)
T cd05870 90 HQKSMYLDI 98 (98)
T ss_pred ceeEEEEeC
Confidence 887777654
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=94.61 Aligned_cols=81 Identities=26% Similarity=0.385 Sum_probs=65.0
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCC-CCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSE-TLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~-~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|+.++|.|.+.+.|.+.+.|+|++..+... ........++.+ .+++|.|.+++ .+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQ-RSDVGYYICQTLNVAGSILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCC-hhhCEEEEEEEEcCCCceEEEEEE
Confidence 789999999999999999999987653210 000112456665 36789999999 999999999999999999999999
Q ss_pred EEEe
Q psy14886 82 RVLT 85 (505)
Q Consensus 82 ~v~~ 85 (505)
.|..
T Consensus 80 ~V~~ 83 (90)
T cd05726 80 EVTD 83 (90)
T ss_pred EEee
Confidence 9986
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=93.21 Aligned_cols=74 Identities=26% Similarity=0.544 Sum_probs=58.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEEE-CC---eEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQ-DN---VLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~~-~~---~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++++|.|.+.|.|. .+.|++ ++.++. ...|+.+. ++ +|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-------~~~r~~~~~~g~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-------SSQRVVVQKEGVRSRLTIYNAN-IEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-------CCCCEEEEeCCCeeEEEEecCC-hHHCEEEEEEEEcCCCcE
Confidence 468999999999999987 999998 466665 23456543 33 89999999 999999999999998875
Q ss_pred E-eeEEEEE
Q psy14886 76 Y-SSAQLRV 83 (505)
Q Consensus 76 ~-~~~~l~v 83 (505)
. .++.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 4 3455544
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=93.53 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=58.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.|++++|.|.+.|+|.+.|+|++||..+... ...++.+.+++|.|.++....|+|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 18 PEEKVTLGCRARASPPATYRWKMNGTEIKFA-----PESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCCeEEEEeEceeCCCCEEEEEECCEECccC-----CCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 3578999999999999999999999998632 234666778899998865258999999999999998765
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=94.44 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=62.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--EC---CeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QD---NVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~---~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.+.|.|.+.+.|.+.+.|+|++..+.. ..++.. .. .+|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 13 v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIEL-------SEHYSVKLEQGKYASLTIKGVT-SEDSGKYSINVKNKYGGE 84 (92)
T ss_pred EcCCCEEEEEEEEEEeCCCeEEEEECCEECCC-------CCCEEEEEcCCCEEEEEECCCC-hhhCEEEEEEEEeCCCce
Confidence 46899999999999999999999999998763 233322 22 379999999 999999999999999998
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 85 ~~~~~v~~ 92 (92)
T cd05891 85 TVDVTVSV 92 (92)
T ss_pred eeEEEEEC
Confidence 88777754
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=95.56 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=62.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+.|++++|.|.+.|.|.+.++|++++..+..... ...+++.+. .++|.|.+++ .+|+|.|+|.|.|..|....
T Consensus 15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~--~~~~~~~v~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEK--TLDGHIVVRSHARVSSLTLKYIQ-YTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EcCCCEEEEEEeeEeCCCEEEEEECCccccCCcc--ccCccEEEEcCccEEEEEEecCc-cCcCEEEEEEEecCCCCeeE
Confidence 3589999999999999999999999887653211 112344432 2589999999 99999999999999999888
Q ss_pred eEEEEE
Q psy14886 78 SAQLRV 83 (505)
Q Consensus 78 ~~~l~v 83 (505)
.+.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 877764
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=91.08 Aligned_cols=72 Identities=29% Similarity=0.401 Sum_probs=59.4
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|++++|.|.+.|.|.+.+.|++++..+. ...++.+. .+.|.|.+++ .+|+|.|+|.|.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP-------DSARVSITSEGGYGTLTIRDVK-ESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC-------CCCCEEEEECCCEEEEEECCCC-hHHCEEEEEEEEecCCEEEecc
Confidence 7899999999999999999999998876 23444331 2579999999 9999999999999999887765
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.+.+
T Consensus 73 ~~~~ 76 (78)
T cd05743 73 DGIL 76 (78)
T ss_pred cEEE
Confidence 5443
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=91.80 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=62.2
Q ss_pred CeEEEEeecCCCCCC--eEEEEECCEEecCC---CcEEE----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 105 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSG---GRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 105 ~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~---~~~~~----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
++++|.|.+.|.|.+ .+.|+++|..+... .++.. ...++|.|.+++..|+|.|+|.|.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999876 68999999887542 22211 1245799999999999999999999999999999999
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 97654
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=93.59 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=64.8
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEe--------cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|+++.|.|.+.|.|.|.+.|+++|..+ ....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 688999999999999999999987643 224455665677899999999999999999999999999999999
Q ss_pred EEeC
Q psy14886 176 VLHG 179 (505)
Q Consensus 176 v~~~ 179 (505)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 8653
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=89.89 Aligned_cols=73 Identities=29% Similarity=0.621 Sum_probs=62.9
Q ss_pred CCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.....+++|.|..+...|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 677776666666667788999999999999999999999998877776654
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=89.30 Aligned_cols=71 Identities=32% Similarity=0.520 Sum_probs=57.6
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceE-eeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY-SSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v 83 (505)
++|.|.+.|.|.+.|+|+|++.++... ...++.. .+++|.|.+++ .+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~-----~~~~~~~~~~g~L~i~~~~-~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTT-----SNGRIKQLRSGALQIENSE-ESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccC-----CCCCEEEcCCcEEEECCCC-hhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999999999999999987632 2345554 46789999999 9999999999999998854 4566665
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=89.55 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=53.8
Q ss_pred EEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcE----E-----EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----F-----IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 9 l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~----~-----~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.|.+.|+|.|.|+|+|||++|... .++ . ...+.|.|.++. .+|+|.|+|.|.|..|....++
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~-------~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~YtC~A~N~~G~~~~~~ 74 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNES-------EYICTKIHVINNTEYHGCLQLDNPT-HLNNGIYTLVAKNEYGEDEKNV 74 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCC-------cceeeeeEeecccceEEEEEECCCC-cccCEEEEEEEEcCCcccceEE
Confidence 6899999999999999999999732 221 1 123589999999 9999999999999999877766
Q ss_pred EEE
Q psy14886 80 QLR 82 (505)
Q Consensus 80 ~l~ 82 (505)
.+.
T Consensus 75 ~~~ 77 (79)
T cd05855 75 SAH 77 (79)
T ss_pred Eee
Confidence 553
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=91.98 Aligned_cols=79 Identities=38% Similarity=0.714 Sum_probs=65.7
Q ss_pred ceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecC-CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EE
Q psy14886 97 SETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~ 173 (505)
....+.+|+++.|.|.+ .+.|.+.+.|+++|..+.. ..+.....++.|.|.++..+|+|.|+|.+.|..|..... +.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 45678899999999998 7889999999999998875 445555566789999999999999999999999886544 44
Q ss_pred EE
Q psy14886 174 LI 175 (505)
Q Consensus 174 l~ 175 (505)
|.
T Consensus 84 l~ 85 (86)
T cd05724 84 LS 85 (86)
T ss_pred EE
Confidence 43
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=92.60 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=61.2
Q ss_pred CceEEEEEEeccCCC--eEEEEECCEECcCCCCCCCCCCcE---E--EECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 5 ADLTWTCEAFGVPDV--TYSWFRNGELLNSETLPLEDQDRY---F--IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 5 ~~~~l~C~~~~~p~~--~~~W~~~~~~l~~~~~~~~~~~~~---~--~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
++++|.|.+.+.|.+ .+.|+|+|.++.... ...++ . ...++|.|.+++ .+|+|.|+|.|.|..|....
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~----~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDK----DGGHYRRVGGKDSNGDLMIRNAQ-LKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccC----CCccEEEEecccccceEEEccCC-HHhCeeeEEEEecCCCcEEE
Confidence 578999999998865 679999999886321 11111 1 145789999999 99999999999999999988
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.|.|..
T Consensus 76 ~~~l~V~~ 83 (85)
T cd04970 76 SADLIVRG 83 (85)
T ss_pred EEEEEEEC
Confidence 99999985
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-13 Score=95.41 Aligned_cols=83 Identities=29% Similarity=0.430 Sum_probs=69.8
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
+|.++.+.....+++.|.|+++. ..++.+.+|.|+|+..+... +....... ....+.|.+|.|++.|.|+|+|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS--SGNGPITGYRVEYRSVNSTSDWQEVTVPG----NETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS--STSSSESEEEEEEEETTSSSEEEEEEEET----TSSEEEEESCCTTSEEEEEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCC--CCCCCeeEEEEEEEecccceeeeeeeeee----eeeeeeeccCCCCCEEEEEEEE
Confidence 68899999999999999999943 88899999999999988555 44444333 2237888999999999999999
Q ss_pred ecCCCCCCCC
Q psy14886 468 INDVGPGPES 477 (505)
Q Consensus 468 ~n~~G~g~~s 477 (505)
+|..|.|++|
T Consensus 76 ~~~~g~g~~S 85 (85)
T PF00041_consen 76 VNSDGEGPPS 85 (85)
T ss_dssp EETTEEEEEE
T ss_pred EeCCcCcCCC
Confidence 9999999876
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=90.15 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=64.0
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
...+.+|+.+.|.|.+.+. .+.+.|+|+|.++..+.+..+. .+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 3568899999999999886 5689999999998776665553 567999999999999999999999888766665543
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=93.55 Aligned_cols=79 Identities=29% Similarity=0.420 Sum_probs=65.4
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe---eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~---~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
...+.+|+.+.|.|.+.|.|.|.+.|+++|..+......... ....|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 355889999999999999999999999999987654332221 22369999999999999999999999998888777
Q ss_pred EE
Q psy14886 175 IV 176 (505)
Q Consensus 175 ~v 176 (505)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 54
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=89.12 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=59.2
Q ss_pred CCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|+++.|.|.+.|.|.+.+.|++ ++..+. ...++. ..+++|.|.++. .+|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS-------NSSRTLVYDNGTLDILITT-VKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec-------CCCeEEEecCCEEEEEECC-hhhCEEEEEEEECCCCeEEEEEEE
Confidence 7899999999999999999998 566554 223333 356799999999 999999999999999988777766
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 54
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=94.68 Aligned_cols=80 Identities=33% Similarity=0.586 Sum_probs=70.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
..+.+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.+..+... .+|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 557899999999999999999999999999999988777666543 35999999999999999999999998888887
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=91.48 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=64.3
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE---EE-eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~---~~-~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.+. .. .....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 4778999999999999999999999999988754432 11 1234699999999999999999999999988888776
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 4
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=89.71 Aligned_cols=70 Identities=27% Similarity=0.492 Sum_probs=57.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.+.+.|+|++..+... .......+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~------~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD------RTKFENFNKTLKIDNVS-EEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC------ceeEecCCCEEEECCCC-HHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 579999999999999999999877521 11222345789999999 99999999999999998877777766
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=88.59 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=59.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|+|..+....+. .....+|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 469999999999999999999998765433 344678999999999999999999999998877776665
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=92.59 Aligned_cols=68 Identities=24% Similarity=0.370 Sum_probs=57.7
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|+.+.|.|.+.|.|.+.|+|+|++..+.. ...++.+.++.|.|.++...+|+|.|+|.|.|..|...+
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~------~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDL------TNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccC------CCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 45899999999999999999999998753 234677788999999984268999999999999998755
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=92.55 Aligned_cols=76 Identities=17% Similarity=0.364 Sum_probs=60.4
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
..|++++|.|.+.+.|.+.+.|+|++..+..... ........+|.|.+++ .+|+|.|+|.+.|..|.....+.|
T Consensus 7 ~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~-----~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI-----GESRKKKWTLSLKNLK-PEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred cCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc-----ceecCceEEEEEccCC-hhhCEEEEEEEEcCCccEEEEEEE
Confidence 5799999999999999999999999987753211 1111123689999999 999999999999999987777666
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 54
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=88.19 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=60.7
Q ss_pred eEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 106 ~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++.|.|.+.|.|.|.+.|+++|..+..+.+..+... ..|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999999866666555432 36999999999999999999999999888877764
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=87.81 Aligned_cols=69 Identities=32% Similarity=0.630 Sum_probs=59.1
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++|.|.+.|.|.|.+.|++++..+.. .+.....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999876643 4555556778999999999999999999999999888877764
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=90.91 Aligned_cols=68 Identities=31% Similarity=0.571 Sum_probs=55.9
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCC-CCCCEEEEEEEEcCCCceeee
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~y~C~~~~~~g~~~~~ 171 (505)
|..+.|.|.+.|.|.|+++|++++..+..........++.|.|.++. .+|+|.|+|.|.|..|.....
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 87 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSR 87 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEc
Confidence 45799999999999999999999998754333334457889999885 689999999999999987654
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=91.74 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=67.0
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eC---CCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-EN---GNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+..+.++... .. .+|.|.++..+|+|.|+|.|.|..|.....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 35577899999999999999999999999999988765554432 12 269999999999999999999999998887
Q ss_pred EEEEE
Q psy14886 172 GRLIV 176 (505)
Q Consensus 172 ~~l~v 176 (505)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 76653
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-12 Score=92.09 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=64.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCcee-ee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDE-SK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~-~~ 171 (505)
.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|... ++
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 3456889999999999999987 999998 57777666677666555 699999999999999999999998864 44
Q ss_pred EEEEE
Q psy14886 172 GRLIV 176 (505)
Q Consensus 172 ~~l~v 176 (505)
+.|.+
T Consensus 87 i~l~~ 91 (92)
T cd05866 87 VVLEI 91 (92)
T ss_pred EEEEE
Confidence 55554
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-12 Score=93.17 Aligned_cols=94 Identities=26% Similarity=0.453 Sum_probs=70.4
Q ss_pred CCCccCCCCCceEEe--eCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEe--e-----CCCEEEcCCC-CCCCE
Q psy14886 87 KPSFKKRPLESETYA--GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIF--E-----NGNLLISPVS-RDDSG 155 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v--~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~--~-----~~~l~i~~v~-~~d~G 155 (505)
+|.+...+....+.. ..|..++|.|.+.|.|.+.+.|+++|..+... .++... . .+.|.|.++. .+|.|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G 83 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA 83 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence 566655543212211 35689999999999999999999999988642 333221 1 2469999997 58999
Q ss_pred EEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 156 IYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
.|+|.|.|..|.....+.|.+...|
T Consensus 84 ~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 84 LFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999887655
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=91.79 Aligned_cols=75 Identities=31% Similarity=0.471 Sum_probs=60.8
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS- 77 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~- 77 (505)
+.+|+++.|.|.+ .+.|.+.+.|+|++..+... ..++.. .+++|.|.+++ .+|+|.|+|.+.|..|...+
T Consensus 8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~------~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD------NERVRIVDDGNLLIAEAR-KSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC------CCCEEEccCCEEEEeECC-cccCEEEEEEEEeccCceeee
Confidence 4689999999998 68899999999999988742 334443 45799999999 99999999999999887654
Q ss_pred eEEEE
Q psy14886 78 SAQLR 82 (505)
Q Consensus 78 ~~~l~ 82 (505)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 34443
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=88.78 Aligned_cols=70 Identities=34% Similarity=0.601 Sum_probs=59.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec--CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce-eeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~-~~~~~l~v 176 (505)
++|.|.+.|.|.|.+.|++++..+. ...++....++.|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999886 4456666667789999999999999999999999985 34466655
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=89.47 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=54.1
Q ss_pred EEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-------EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-------IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 9 l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|.|.+.|.|.|.|+|+|||++|..... ....+. ...+.|.|.+++ .+|+|.|+|.|.|..|....++.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~---~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDY---IRTEIHYEVTTPTEYHGCLQFDNPT-HVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCc---eeEEEEeecccccccEEEEEECCCC-cccCeEEEEEEEeCCCCeeeEEEe
Confidence 689999999999999999999974311 000111 113479999999 999999999999999998777665
Q ss_pred E
Q psy14886 82 R 82 (505)
Q Consensus 82 ~ 82 (505)
.
T Consensus 79 ~ 79 (81)
T cd04971 79 H 79 (81)
T ss_pred e
Confidence 4
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=99.91 Aligned_cols=114 Identities=18% Similarity=0.309 Sum_probs=81.3
Q ss_pred CeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEE
Q psy14886 48 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKK 125 (505)
Q Consensus 48 ~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~ 125 (505)
.+|.|.+++ .+|+|.|+|.+.+..+.....+.|.|.. +|.+.+.+. .....+|+.+.|.|.+.|. |. ++|.|++
T Consensus 1 asL~i~~v~-~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-~P~v~~~~~--~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~ 76 (139)
T cd05771 1 ASLTLPGLT-VHDEGTYICSVSTPPHQAQQIIQLSVSE-PPRVRLSLE--KLVSMIEEPQTLICHIAGYYPLDVQVEWTR 76 (139)
T ss_pred CeEEECCCC-HHHCEEEEEEEEccCcceeeEEEEEEec-CCceEEeCC--CceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence 379999999 9999999999998878877888999985 777665542 2334478899999999986 54 4899999
Q ss_pred CCEEecC-----CC----cEEEeeCCC------EEEcCCCCCCCEEEEEEEEcCC
Q psy14886 126 DGNIIGS-----GG----RRKIFENGN------LLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 126 ~g~~~~~-----~~----~~~~~~~~~------l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+|..... .. ......+++ |.+......+.+.|+|.+.+..
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 77 EPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 8754211 11 111223333 5555555556779999998653
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=95.05 Aligned_cols=75 Identities=33% Similarity=0.585 Sum_probs=64.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.+.|.+.+.|++++.++.. ..++.+ ...+|.|.+++ .+|+|.|+|.+.|..|...
T Consensus 12 v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~n~~g~~~ 83 (90)
T PF07679_consen 12 VKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-------SQRYQIESDGGSSSLTIKNVT-REDAGTYTCVASNSSGEAT 83 (90)
T ss_dssp EETTSEEEEEEEEEESSSSEEEEEETTEEEES-------SSSEEEEEETTEEEEEESSES-GGGSEEEEEEEEETTEEEE
T ss_pred EeCCCEEEEEEEEEeCCCCcccccccccceee-------eeeeeeecccceeEEccCCCC-hhhCEEEEEEEEECCCEEE
Confidence 46899999999999999999999999999984 344444 24689999999 9999999999999988888
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
..+.|.|
T Consensus 84 ~~~~l~V 90 (90)
T PF07679_consen 84 ASVNLTV 90 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 8877765
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=89.03 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=57.7
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.|.++|+|++...... ....++.. .++.|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~----~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPA----ARERRMHVMPEDDVFFIVDVK-IEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCc----ccccceEEecCCCEEEEeeCC-cccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998643211 12334443 35689999999 99999999999999999888888877
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=92.34 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=58.4
Q ss_pred CCceEEEEEEeccCCCeEEEEECC----EECcCCCCCC------CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNG----ELLNSETLPL------EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~----~~l~~~~~~~------~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|+.++|.|.+.|.|.|.|+|+|++ ..+.....+. .....+......|.|.+++ .+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVS-FDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccc-cccCcEEEEEeecccC
Confidence 789999999999999999999964 2222110000 0000011123579999999 9999999999999999
Q ss_pred ceEeeEEEEEE
Q psy14886 74 TRYSSAQLRVL 84 (505)
Q Consensus 74 ~~~~~~~l~v~ 84 (505)
....++.|.|.
T Consensus 80 ~~~~sa~L~V~ 90 (90)
T cd04974 80 PSHHSAWLTVL 90 (90)
T ss_pred cccCCEEEEeC
Confidence 99888888873
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=91.75 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=61.8
Q ss_pred CeEEEEeecCCCCCC--eEEEEECCEEecCCC---cE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 105 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSGG---RR----KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 105 ~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~~---~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
+++.|.|.+.+.|.+ .+.|+++|..+.... .+ .....+.|.|.+++..|+|.|+|.|.|..|.....+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999877 679999999876322 11 112356799999999999999999999999999999999
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 97654
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-12 Score=93.43 Aligned_cols=87 Identities=29% Similarity=0.585 Sum_probs=63.7
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC-----CCcEEEeeCCCEEEc-----CCCCCCCEEE
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----GGRRKIFENGNLLIS-----PVSRDDSGIY 157 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~-----~~~~~~~~~~~l~i~-----~v~~~d~G~y 157 (505)
|.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+++|..+.. ..+.....++.+.+. .+..+|+|.|
T Consensus 2 P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 4454444 457789999999999999999999999999998865 122233334443322 2368999999
Q ss_pred EEEEEcCCCc-eeeeEEEEE
Q psy14886 158 SCTATNVHGM-DESKGRLIV 176 (505)
Q Consensus 158 ~C~~~~~~g~-~~~~~~l~v 176 (505)
+|.|.|..|. ....+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 445566665
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=87.22 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=56.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|+|.++....+ ......|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 46899999999999999999999875433 333557999999999999999999999997777655544
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=93.14 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=62.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.|.|.+.+.|++++..+..... ...+++.+. .++|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 13 ~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQ-LTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCC-cCcCEEeEEEEEeCCCCcE
Confidence 35899999999999999999999999866542210 112344432 2589999999 9999999999999999987
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 7777654
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-12 Score=93.05 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=62.6
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-----CcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-----~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
..+..|+.++|.|.+.|.|.|.++|++++..+... .++..... +.|.|.++..+|+|.|+|.|.|..|....
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 34556899999999999999999999988776432 22222222 36999999999999999999999999988
Q ss_pred eEEEEE
Q psy14886 171 KGRLIV 176 (505)
Q Consensus 171 ~~~l~v 176 (505)
.+.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 887764
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-12 Score=85.90 Aligned_cols=68 Identities=26% Similarity=0.511 Sum_probs=55.6
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
|++++|.|.+.|.|.|.|.|++++..+....+... ....|.|.++ .|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998765443322 2346888887 47999999999999988877665
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-12 Score=89.25 Aligned_cols=73 Identities=29% Similarity=0.490 Sum_probs=61.4
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|.+.|++++..+....++.+... +.|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 68899999999999999999999988876555554433 46999999999999999999999998877765544
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=93.91 Aligned_cols=77 Identities=31% Similarity=0.514 Sum_probs=62.9
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--------ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--------QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.|+.++|.|.+.|.|.+.+.|+|||..+... ..++.. ..+.|.|.+++..+|.|.|+|.|.|..|.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~------~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~ 95 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLG------NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE 95 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCC------CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc
Confidence 4678999999999999999999999988632 123321 13679999987248999999999999999
Q ss_pred eEeeEEEEEEe
Q psy14886 75 RYSSAQLRVLT 85 (505)
Q Consensus 75 ~~~~~~l~v~~ 85 (505)
....+.|.|..
T Consensus 96 ~~~~i~L~~~~ 106 (109)
T cd05773 96 DSLDIQLVSTS 106 (109)
T ss_pred CcEEEEEEecC
Confidence 98888888875
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=91.46 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=57.8
Q ss_pred CCceEEEEEEeccCCCeEEEEEC----CEECcCCCCCCC---CCCcEEE---ECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRN----GELLNSETLPLE---DQDRYFI---QDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~----~~~l~~~~~~~~---~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|++++|.|.+.|.|.|.|+|+|+ +..+.....+.. ....... ..++|.|.+++ .+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVT-FEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCC-HHHCEEEEEEEEeCCC
Confidence 78999999999999999999994 444432111000 0000000 12579999999 9999999999999999
Q ss_pred ceEeeEEEEE
Q psy14886 74 TRYSSAQLRV 83 (505)
Q Consensus 74 ~~~~~~~l~v 83 (505)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888888877
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-12 Score=91.88 Aligned_cols=80 Identities=30% Similarity=0.532 Sum_probs=63.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEecC-----CCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGS-----GGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~~~-----~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
.+..+.+|++++|.|.+.|.|.|.+.|++ ++..+.. +.++.+.. ...|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 34678899999999999999999999999 4444421 23444432 24699999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy14886 167 MDESKGRLIV 176 (505)
Q Consensus 167 ~~~~~~~l~v 176 (505)
.....+.|.|
T Consensus 89 ~~~~~~~l~~ 98 (98)
T cd05870 89 GHQKSMYLDI 98 (98)
T ss_pred cceeEEEEeC
Confidence 9888777654
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=87.65 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=57.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|++++..+...........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999988775432222233457999999999999999999999999888887766
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=89.80 Aligned_cols=69 Identities=35% Similarity=0.592 Sum_probs=57.0
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCc-EEEeeCCCEEEcCCC-CCCCEEEEEEEEcCCCceeee
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR-RKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~-~~~~~~~~l~i~~v~-~~d~G~y~C~~~~~~g~~~~~ 171 (505)
+|+.+.|.|.+.|.|.|+++|+++|..+..... .....++.|.|.++. ..|.|.|+|.|.|..|...+.
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~ 88 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSR 88 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence 578999999999999999999999998864332 223356789999875 699999999999999987554
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-12 Score=87.74 Aligned_cols=65 Identities=25% Similarity=0.463 Sum_probs=53.4
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+++.|.|.+.|.|.+ +|.|+|||.++.. +.....+.|.|..+. |.|.|.|.|.|..|...+
T Consensus 10 v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~---------~~~~~~s~L~i~~~~---d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 10 VTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD---------PPAPSPSVLNVPGLN---ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EcCCCCEEEEEEeeeecCCeEEEEEECCEECCC---------CCCCCCCEEEEcccc---CCeEEEEEEEeccCcEEe
Confidence 4689999999999999998 7999999998863 112235688888765 789999999999997665
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-12 Score=86.75 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=55.7
Q ss_pred EEEeecCCCCCCeEEEEECCEEecCCCcEEE--e------eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--F------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 108 ~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~--~------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.|.|.+.|.|.|+|+|+|+|..+..+.+... . ..+.|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4789999999999999999999976554321 1 123699999999999999999999999888776553
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=88.08 Aligned_cols=68 Identities=32% Similarity=0.527 Sum_probs=55.3
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCC-cEEEeeCCCEEEcCCC-CCCCEEEEEEEEcCCCceeee
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~-~~~~~~~~~l~i~~v~-~~d~G~y~C~~~~~~g~~~~~ 171 (505)
|+++.|.|.+.|.|.+.++|+++|..+.... ......++.|.|.++. ..|.|.|+|.|.|..|...+.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 88 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSR 88 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEE
Confidence 4689999999999999999999999886322 2223346789998865 599999999999999987664
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-12 Score=84.53 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
+.|.|.+.|.|.|++.|+|+|.++..........+.+|.|.++..+|+|.|+|.|.+.........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 468999999999999999999988754332233445899999999999999999999755544443
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-12 Score=88.39 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=57.9
Q ss_pred CCceEEEEEEeccCCCeEEEEECCE---ECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGE---LLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~---~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|++++|.|.+.|.|.+.+.|+|++. .+... +.....++.. ..++|.|.+++ .+|+|.|+|.+.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMR--PNHVRGNVVVTNIGQLVIYNAQ-PQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeec--CCcccCCEEEccccEEEEccCC-cccCEEEEEEEecCCceEEEEE
Confidence 7899999999999999999999742 11100 0001122322 44789999999 9999999999999999988887
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 7764
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=89.58 Aligned_cols=79 Identities=42% Similarity=0.710 Sum_probs=62.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCCCEEEcCC-----CCCCCEEEEEEEEcC-CCce
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPV-----SRDDSGIYSCTATNV-HGMD 168 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~v-----~~~d~G~y~C~~~~~-~g~~ 168 (505)
....+.+|+++.|.|.+.+.|.+.+.|+|+|..+.... +.....++.|.|.++ ...|.|.|+|.|.|. .|..
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 34567889999999999999999999999999886533 244555677777776 578999999999999 8887
Q ss_pred ee-eEEEE
Q psy14886 169 ES-KGRLI 175 (505)
Q Consensus 169 ~~-~~~l~ 175 (505)
.+ .+.|.
T Consensus 87 ~s~~~~l~ 94 (95)
T cd05722 87 VSRTARLT 94 (95)
T ss_pred EEeeeEEe
Confidence 44 35554
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=91.92 Aligned_cols=81 Identities=26% Similarity=0.419 Sum_probs=57.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEE-----cCCCCCCCeEEEEEEEcccCc-
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIR-----YLNPERDPAMYQCRAKNQLKT- 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~-----~~~~~~d~G~Y~C~~~~~~~~- 74 (505)
+.+|++++|.|.+.|.|.+.+.|+|+|..+...... ....+....++.+.+. .++ .+|+|.|+|.|.|..|.
T Consensus 13 v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~-~~D~G~Y~C~a~N~~G~~ 90 (100)
T cd07693 13 VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD-PRSHRIVLPSGSLFFLRVVHGRKG-RSDEGVYVCVAHNSLGEA 90 (100)
T ss_pred EcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCC-CCcceEEecCCcEEEEEeeccCCC-cCcCEEEEEEEEccccce
Confidence 468999999999999999999999999988742110 0112233334443332 236 89999999999999998
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
....+.|.|
T Consensus 91 ~s~~~~l~v 99 (100)
T cd07693 91 VSRNASLEV 99 (100)
T ss_pred ecceEEEEe
Confidence 444666665
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=89.19 Aligned_cols=78 Identities=26% Similarity=0.352 Sum_probs=63.0
Q ss_pred eEEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecC----CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 98 ETYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~----~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
...+.+|+.+.|.|.+.+ .|.+.|.|+|++..+.. ..+. ...++.|.|.++..+|+|.|+|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~-~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRM-HQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccccccee-eecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 456789999999999998 68889999999876432 1222 2235689999999999999999999999998
Q ss_pred eeeEEEEE
Q psy14886 169 ESKGRLIV 176 (505)
Q Consensus 169 ~~~~~l~v 176 (505)
...+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88877764
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=90.60 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEEC--------CeEEEEcCCCC-CCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQD--------NVLTIRYLNPE-RDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~--------~~L~i~~~~~~-~d~G~Y~C~~~~ 70 (505)
+.+|+.++|.|.+.|.|.+ .|.|++++..+... ...++.+.. ++|.|.+++ . +|.|.|+|.|.|
T Consensus 13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~-~~d~~G~Y~C~A~N 86 (98)
T cd05758 13 AILGDKGRVECFIFSTPPPDRIVWTWKENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQ-ESDFQTSYNCTAWN 86 (98)
T ss_pred EeCCCcEEEEEEEcccCCCCEeEEEECCEEccCC-----CCCCEEEEEecCCCceEEEEEECCcc-ccccceeEEEEEEc
Confidence 3579999999999999988 69999999988642 224555431 479999999 7 559999999999
Q ss_pred ccCceEeeEEE
Q psy14886 71 QLKTRYSSAQL 81 (505)
Q Consensus 71 ~~~~~~~~~~l 81 (505)
..|.....+.|
T Consensus 87 ~~G~~~~~~~L 97 (98)
T cd05758 87 SFGSGTAIISL 97 (98)
T ss_pred CCCcccEEEEe
Confidence 99987766654
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=84.82 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=59.6
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
+.|.|.+.|.|.+.+.|+|++..+... ...++.. .+..|.|.+++ .+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~-----~~~~~~~~~~~~~l~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPK-----LSKQLTLIANGSELHISNVR-YEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCC-----CCccEEEeCCCCEEEECcCC-cccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 479999999999999999999988632 1234443 23579999999 999999999999999998888888775
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=89.73 Aligned_cols=76 Identities=30% Similarity=0.490 Sum_probs=59.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCC-cEEEECCeEEEEcC-----CCCCCCeEEEEEEEcc-cC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQD-RYFIQDNVLTIRYL-----NPERDPAMYQCRAKNQ-LK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~-~~~~~~~~L~i~~~-----~~~~d~G~Y~C~~~~~-~~ 73 (505)
+.+|++++|.|.+.|.|.+.+.|+|+|..+... ... .....+++|.|.++ + .+|.|.|+|.|.|. .|
T Consensus 11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~-----~~~~~~~~~~~~l~i~~v~~~~~~-~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 11 AVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV-----SDERRQQLPNGSLLITSVVHSKHN-KPDEGFYQCVAQNDSLG 84 (95)
T ss_pred EcCCCCEEEeeecccCCCCEEEEEECCeECccc-----cCcceEEccCCeEEEeeeeccCCC-CCcCEEEEEEEECCccC
Confidence 357999999999999999999999999988632 112 22335677888776 5 78999999999999 88
Q ss_pred ceEe-eEEEE
Q psy14886 74 TRYS-SAQLR 82 (505)
Q Consensus 74 ~~~~-~~~l~ 82 (505)
...+ .+.|.
T Consensus 85 ~~~s~~~~l~ 94 (95)
T cd05722 85 SIVSRTARLT 94 (95)
T ss_pred cEEEeeeEEe
Confidence 7644 45554
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=85.56 Aligned_cols=70 Identities=30% Similarity=0.585 Sum_probs=56.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCC-cEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee--EEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESK--GRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~-~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v 176 (505)
++|.|.+.|.|.|.+.|+|+|.++.... ++.+. ..+.|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999886543 23332 23579999999999999999999999987544 45544
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=86.15 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=55.7
Q ss_pred EEEeecCCCCCCeEEEEECCEEecCCCcEEEe----------eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 108 ~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.|.|.+.|.|.|+++|+|+|+.+..+...... ..+.|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37899999999999999999999765533211 123599999999999999999999999988876654
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=85.63 Aligned_cols=70 Identities=19% Similarity=0.455 Sum_probs=56.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
.+..+.+|+++.|.|.+.|.|.| +|.|+++|.++... . ....+.|.|..+ .|.|.|.|.|.|..|...+.
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P-APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C-CCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 45778999999999999999999 79999999988641 1 123456888886 47899999999999977653
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=89.30 Aligned_cols=79 Identities=29% Similarity=0.479 Sum_probs=63.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-----CcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-----~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
+..+.+|+++.|.|.+.|.|.+.+.|++++..+... .++.+.. ...|.|.++..+|+|.|+|.|.|..|...
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 356889999999999999999999999988665432 2233322 23699999999999999999999999988
Q ss_pred eeEEEEE
Q psy14886 170 SKGRLIV 176 (505)
Q Consensus 170 ~~~~l~v 176 (505)
..+.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 8777654
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=85.56 Aligned_cols=63 Identities=19% Similarity=0.369 Sum_probs=54.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|.+|+++.|.|.+.+ +.+.+.|+|||.++.. ...++.+.++.|.|.+++ .+|+|.|+|.+.+.
T Consensus 8 v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~------~~~r~~~~~~~L~I~nv~-~~DsG~Y~C~a~e~ 70 (87)
T cd05873 8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTP------ESAKYLLYRDGLLIFNAS-EADAGRYQCLSVEK 70 (87)
T ss_pred EECCCCEEEEEECCC-CCCeEEEEECCEECCC------CCceEEEECCcEEEeCCC-HHHCEEEEEEEEec
Confidence 468999999999864 6789999999999974 235777888899999999 99999999999864
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=84.66 Aligned_cols=66 Identities=38% Similarity=0.600 Sum_probs=52.6
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCC---CCCCeEEEEEEEcccCceEe
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNP---ERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~---~~d~G~Y~C~~~~~~~~~~~ 77 (505)
++|.|.+.|.|.+.|+|+|++.++... ...++.. .+++|.|.+++. .+|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~-----~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPE-----KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCC-----CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 589999999999999999999988632 2234443 468999999861 37999999999999987654
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=85.10 Aligned_cols=70 Identities=31% Similarity=0.595 Sum_probs=56.6
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec---CCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~---~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++|.|.+.|.|.|.++|+++|.... ...++... .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999886422 22233333 3457999999999999999999999999888888876
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=88.12 Aligned_cols=73 Identities=30% Similarity=0.516 Sum_probs=57.2
Q ss_pred CCeEEEEeecCCCCCCeEEEEECC----EEecCCCc--EEEe----------eCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDG----NIIGSGGR--RKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g----~~~~~~~~--~~~~----------~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|+.++|.|.+.|.|.|.|+|+|++ ..+..... .... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999953 33322111 1111 1236999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy14886 168 DESKGRLIV 176 (505)
Q Consensus 168 ~~~~~~l~v 176 (505)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999888887
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=86.62 Aligned_cols=70 Identities=31% Similarity=0.570 Sum_probs=57.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.|+.+.|.|.+.|.|.+.++|+|++..+... ...++...++.|.|.++...+|+|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~-----~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDE-----PDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCC-----CCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 3567999999999999999999999988522 234566778899999887248999999999999987655
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=83.21 Aligned_cols=66 Identities=29% Similarity=0.564 Sum_probs=52.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCC----CCeEEEEEEEcccCceEee
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPER----DPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~----d~G~Y~C~~~~~~~~~~~~ 78 (505)
+.|.|.+.|.|.++|+|+|++.++... ...++.. .+++|.|..+. .+ |+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~-----~~~~~~~~~~~g~l~i~~~~-~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDID-----KDPKVTMKPNTGTLVINIMN-GEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCc-----CCCCEEEeCCCceEEEeccc-cCCCCCCCEEEEEEEEcCCCeEEee
Confidence 579999999999999999999987532 2233443 46889998887 53 7899999999999886653
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=85.46 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=54.1
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCC-CCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLR 82 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~-~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~ 82 (505)
++|.|.+.|.|.+.+.|+|++........ .....+++.. .+++|.|.+++ .+|+|.|+|.|.|..|...+ .+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVL-EEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCC-cccCEEEEEEEEeCCCCCCceEEEEe
Confidence 58999999999999999996442211100 0012345554 56899999999 99999999999999887643 44444
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=87.29 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=61.9
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE-eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
....|+++.|.|.+.+.|.+.+.|++++..+........ .....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 456799999999999999999999999987754332222 12246999999999999999999999998877766653
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=86.31 Aligned_cols=69 Identities=28% Similarity=0.508 Sum_probs=53.9
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
++|.|.+.| .|.+.+.|+|+++++..... ...+.+ ..++|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~----~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNK----PRNIKIRNKKKNSELQINKAK-LADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCC----cceEEEEecCceEEEEEccCC-cccCeEEEEEEEEcCCceeEEEe
Confidence 579999999 89999999999998874311 011111 24689999999 99999999999999988766553
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=86.76 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCceEEEEEEecc--CCCeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|+.++|.|.+.+. |.+.+.|.+++..+....... ..........++|.|.+++ .+|+|.|+|.|.|..+....++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~-~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNAT-LKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCC-hhhCEEEEEEEccCCCceEEEE
Confidence 8899999999998 789999999887654221100 0000111234689999999 9999999999999998888888
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 7766
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=87.44 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=59.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCc-eee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGM-DES 170 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~-~~~ 170 (505)
....+..|+++.|.|.+.|.|. .+.|++ ++..+....+.....++ +|.|.++..+|+|.|+|.|.|..|. ...
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 3466889999999999999874 999998 67666554444443332 6999999999999999999998654 454
Q ss_pred eEEEE
Q psy14886 171 KGRLI 175 (505)
Q Consensus 171 ~~~l~ 175 (505)
++.|.
T Consensus 87 sv~l~ 91 (92)
T cd04977 87 TVNLK 91 (92)
T ss_pred EEEEE
Confidence 55554
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=87.37 Aligned_cols=73 Identities=30% Similarity=0.544 Sum_probs=54.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEE-EC----CeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFI-QD----NVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~-~~----~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|+++.|.|.+.|.|. .+.|++ ++..+.. ..++.. .+ ++|.|.+++ .+|+|.|+|.|.|..|.
T Consensus 12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT-------QQQISVVQNDDVRSTLTIYNAN-IEDAGIYKCVATDAKGT 82 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc-------CCCEEEEeCCCCEEEEEEecCC-cccCEEEEEEEEcCCCC
Confidence 468999999999999875 999998 5655542 223322 22 489999999 99999999999998654
Q ss_pred -eEeeEEEE
Q psy14886 75 -RYSSAQLR 82 (505)
Q Consensus 75 -~~~~~~l~ 82 (505)
...++.|.
T Consensus 83 ~~~~sv~l~ 91 (92)
T cd04977 83 ESEATVNLK 91 (92)
T ss_pred cceeEEEEE
Confidence 44455544
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=87.17 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=63.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCC--CcEEEeeC-------CCEEEcCCCCC-CCEEEEEEEEcCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSG--GRRKIFEN-------GNLLISPVSRD-DSGIYSCTATNVH 165 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~--~~~~~~~~-------~~l~i~~v~~~-d~G~y~C~~~~~~ 165 (505)
....+.+|+++.|.|.+.|.|.| .+.|++++..+... .++.+... ..|.|.++..+ |.|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 34568999999999999999998 69999999887643 45555433 26999999984 5899999999999
Q ss_pred CceeeeEEE
Q psy14886 166 GMDESKGRL 174 (505)
Q Consensus 166 g~~~~~~~l 174 (505)
|.....+.|
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 998777655
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=87.47 Aligned_cols=73 Identities=27% Similarity=0.539 Sum_probs=57.7
Q ss_pred CCeEEEEeecCCCCCCeEEEEEC----CEEecCCCc--EEEee----------CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKD----GNIIGSGGR--RKIFE----------NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~----g~~~~~~~~--~~~~~----------~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|+++.|.|.+.|.|.|.|.|+++ |..+..+.. ..... ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 444433221 11111 136999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy14886 168 DESKGRLIV 176 (505)
Q Consensus 168 ~~~~~~l~v 176 (505)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888877
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=81.96 Aligned_cols=67 Identities=33% Similarity=0.554 Sum_probs=52.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCC--C-CCCeEEEEEEEcccCceEee
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNP--E-RDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~--~-~d~G~Y~C~~~~~~~~~~~~ 78 (505)
+.|.|.+.|.|.+.|+|+|++..+... ...++.+ .+++|.|..+.. . +|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVA-----KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCc-----CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 579999999999999999999977422 2344544 467999998641 2 46999999999999976553
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=81.99 Aligned_cols=67 Identities=25% Similarity=0.510 Sum_probs=56.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+..+..|+++.|.|.+.+ +.+++.|++||.++..+.......++.|.|.+++.+|+|.|+|.+.+.
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 4567899999999999864 577999999999997653333445778999999999999999999865
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=87.76 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECc-CCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~-~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
|.+|+++.|.|.+.+.|.+.|.|+|++..+. ..........|+.+. ..+|.|.+++ .+|+|.|+|.+..
T Consensus 9 v~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~-~~D~G~YtC~~~t 83 (95)
T cd05882 9 VAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQ-LSDEGEYTCSIFT 83 (95)
T ss_pred EecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCC-cccCEEEEEEEEe
Confidence 4689999999999999999999999876431 111111123455432 3689999999 9999999999986
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=85.45 Aligned_cols=73 Identities=15% Similarity=0.330 Sum_probs=57.6
Q ss_pred CCCCCceEEEEEEec-----cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFG-----VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++..|.|...+ +|.+.+.|+||+.++.. ..+....++.|.|.++. .+|+|.|+|.+.|..+..
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~-------~~~~~~~~~~L~I~~v~-~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG-------DRKRFVKGSKLLIQNVT-EEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC-------CccEEecCCEEEEeeCC-hhhCEEEEEEEEecCCCE
Confidence 467999999998753 25789999999999873 23333377899999999 999999999999887765
Q ss_pred EeeEEE
Q psy14886 76 YSSAQL 81 (505)
Q Consensus 76 ~~~~~l 81 (505)
...+..
T Consensus 79 ~~~~t~ 84 (92)
T cd05757 79 QYNVTR 84 (92)
T ss_pred EEEEEE
Confidence 554433
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-11 Score=81.84 Aligned_cols=71 Identities=35% Similarity=0.628 Sum_probs=59.4
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCC-CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~-~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+.|.|.+.|.|.|.+.|++++..+.... ++....++ .|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999999876542 33333343 59999999999999999999999999988888874
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-11 Score=86.09 Aligned_cols=71 Identities=34% Similarity=0.506 Sum_probs=58.4
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+.+|++++|.|.+.+ .|.+.+.|++++..+.. +....++.|.|.+++ .+|+|.|+|.+.|..|.....+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---------~~~~~~~~L~I~~v~-~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS---------RAMDFNGILTIRNVQ-LSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC---------cccccCCEEEECCCC-HHHCEEEEEEEeccCCeEeEEE
Confidence 478999999999975 67899999999876541 122346799999999 9999999999999998887776
Q ss_pred EE
Q psy14886 80 QL 81 (505)
Q Consensus 80 ~l 81 (505)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 55
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=90.70 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.5
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
+|.|.+++..|+|.|.|.+.+..+.....+.|.|..+|.+... +.......|..+.|.|.+.+..++.+.+.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 4899999999999999999998888888899999877766443 333344467889999999997665678999998754
Q ss_pred ecC-----CCCCc----ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 223 IGN-----MDLNE----LETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 223 ~~~-----~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
... ..... ..........+.|.+.....++...|+|.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 211 01000 00000111123455555555567799999977543
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=85.68 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=61.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC-ceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK-TRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~-~~~~~~ 79 (505)
+.+|+++.|.|.+.+ |.+.+.|+|++..+..... ...++....+.|.|.+++ .+|+|.|+|.+.+..+ ....+.
T Consensus 8 v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 8 VVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE---PEERLLVTEDGLLIRSVS-PADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EECCCcEEEEEeCCC-CCceEEEEECCcccccccC---cCceEEEcCCCEEEccCC-HHHCEEEEEEEecCccceeEeEE
Confidence 358999999999977 7789999999987763211 134666666789999999 9999999999986543 344456
Q ss_pred EEEEEe
Q psy14886 80 QLRVLT 85 (505)
Q Consensus 80 ~l~v~~ 85 (505)
.|.|.+
T Consensus 83 ~l~V~~ 88 (89)
T cd04979 83 SLNVLE 88 (89)
T ss_pred EEEEec
Confidence 676653
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=83.64 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcE----EEECCeEEEEcCCCCCCCeEEEEEEEcccC--ceEe
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPAMYQCRAKNQLK--TRYS 77 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~----~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~--~~~~ 77 (505)
|++++|.|.+.+.|.+.+.|+++++....... ...+. ....++|.|.+++ .+|+|.|+|.|.|..+ ....
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~s~L~I~~~~-~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP---EVEEVKVPATTLRSTLTFPHAT-VEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce---EEEEEecCCcEEEEEEEECCCC-cCCCEEEEEEEEECccCcceeE
Confidence 89999999999988999999998764331100 00011 1124689999999 9999999999998765 4445
Q ss_pred eEEEEEE
Q psy14886 78 SAQLRVL 84 (505)
Q Consensus 78 ~~~l~v~ 84 (505)
++.|.|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 5666654
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-11 Score=83.21 Aligned_cols=69 Identities=41% Similarity=0.647 Sum_probs=53.6
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec--------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG--------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLI 175 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~--------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~ 175 (505)
++|.|.+.|.|.|.+.|++++.... ...+.....+++|.|.++..+|+|.|.|.|.|..|..... +.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5799999999999999999643211 2344555567889999999999999999999999977443 4443
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-11 Score=83.35 Aligned_cols=73 Identities=27% Similarity=0.550 Sum_probs=57.2
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCE---E--ecCC---CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGN---I--IGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~---~--~~~~---~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|+++.|.|.+.|.|.|.+.|++++. . +... .++.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6889999999999999999999632 1 1111 122233346799999999999999999999999988888776
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=81.51 Aligned_cols=70 Identities=23% Similarity=0.508 Sum_probs=52.9
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.|.|.+.+ .|.+.+.|+|+++.+..... ...++.. ..++|.|.+++ .+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~---~~~~~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK---PDNKIKIRKKKKSSELQISKAS-LADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCC---CCceEEEEeCCcEEEEEECcCC-cccCEEEEEEEEeCCCceeEEEe
Confidence 579999874 67899999999998863211 1123332 23679999999 99999999999999988766554
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=82.43 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=59.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.++|.|.+.+.|.+.+.|+|++..+... .+... ....|.|.+++ .+|.|.|+|.+.|..|..
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE-------HRIGGYKVRKKKWTLILESVV-PSDSGKYTCIVENKYGSI 77 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECccc-------CceeEEEccCcEEEEEEeECC-cccCEEEEEEEEECCceE
Confidence 468999999999999999999999999887622 11111 22479999999 999999999999988887
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
..++.|.|
T Consensus 78 ~~~~~l~v 85 (85)
T cd05729 78 NHTYKVDV 85 (85)
T ss_pred EEEEEEeC
Confidence 76666653
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-11 Score=81.06 Aligned_cols=60 Identities=25% Similarity=0.474 Sum_probs=50.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
+...+.+|++++|.|.+.+.|. ..+.|++||..+.. ..+.|.|.++ .+|+|.|+|.|.+.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4456889999999999999875 47999999988732 2457899999 99999999999874
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=79.74 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=51.2
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec--CCCcEEE-eeCCCEEEcCCC----CCCCEEEEEEEEcCCCceeee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKI-FENGNLLISPVS----RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~-~~~~~l~i~~v~----~~d~G~y~C~~~~~~g~~~~~ 171 (505)
+.|.|.+.|.|.|.++|+++|..+. .+.++.. ..+++|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999999999999999998763 3444444 346789998764 246999999999999977655
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=79.67 Aligned_cols=65 Identities=28% Similarity=0.613 Sum_probs=50.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecC--CCcEEEe-eCCCEEEcCCCC----CCCEEEEEEEEcCCCceeee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLISPVSR----DDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~-~~~~l~i~~v~~----~d~G~y~C~~~~~~g~~~~~ 171 (505)
+.|.|.+.|.|.|+++|+++|..+.. ..+.... .+++|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 47999999999999999999998742 2233332 457888877764 37899999999999987654
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=81.16 Aligned_cols=67 Identities=28% Similarity=0.565 Sum_probs=53.8
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCCcEE---Ee---eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK---IF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~---~~---~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
+.|.|.+.| .|.+.+.|+++|..+....+.. +. ....|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 8999999999999886543322 21 1246999999999999999999999998776653
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=80.10 Aligned_cols=65 Identities=29% Similarity=0.608 Sum_probs=51.5
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCC--CcEEE-eeCCCEEEcCCCC----CCCEEEEEEEEcCCCceeee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKI-FENGNLLISPVSR----DDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~-~~~~~l~i~~v~~----~d~G~y~C~~~~~~g~~~~~ 171 (505)
+.|.|.+.|.|.|+++|+++|..+... .+... ..++.|.|.++.. +|+|.|+|.|.|..|...+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcc
Confidence 479999999999999999999987532 23333 2357899988754 68999999999999976553
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=80.45 Aligned_cols=56 Identities=29% Similarity=0.662 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
+.+|++++|.|.+.+.|. ..+.|+||+..+.. .+++|.|.++ .+|+|.|+|.|.+.
T Consensus 12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------------~~~~l~i~~~--~~dsG~Y~C~a~~~ 68 (78)
T cd05752 12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------------TTNSYRIRAA--NNDSGEYRCQTQGS 68 (78)
T ss_pred eeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------------cCCeEEEeec--ccCCEEeEEECCCC
Confidence 468999999999988775 57999999998741 2468889888 68999999999864
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=81.95 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=52.6
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+.++|.|.+.+ .+...+.|+|++..+.. ...++.|.|.+++ .+|+|.|+|.+.+..+...+
T Consensus 11 V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----------~~~~~~l~I~~~~-~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 11 VFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----------SHSNSNLSIPQAT-LSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----------cCCCceEEECccC-HHHCEEEEEEEEeCCceecC
Confidence 578999999999854 55678999999987642 1125689999999 99999999999988775443
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=83.20 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEEC-cCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELL-NSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l-~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|++++|.|.+.+.|.+.+.|++.+..+ ..........+|+.. ...+|.|.+++ .+|+|.|+|.+.+.. .
T Consensus 9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~~DsG~Y~C~~~t~~-~ 86 (95)
T cd07701 9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVS-LSDEGQYTCSLFTMP-V 86 (95)
T ss_pred EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCC-cccCEEEEEEeEeec-C
Confidence 478999999999999999999998743221 100001113456644 23589999999 999999999998643 2
Q ss_pred eEeeEEEE
Q psy14886 75 RYSSAQLR 82 (505)
Q Consensus 75 ~~~~~~l~ 82 (505)
....+.|.
T Consensus 87 ~~~~~~l~ 94 (95)
T cd07701 87 KTSKAYLT 94 (95)
T ss_pred ccEEEEEE
Confidence 34445544
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=81.29 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=57.0
Q ss_pred CCeEEEEeecCCC--CCCeEEEEECCEEecCCCcE---EE-----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 104 GGNVTIFCNPEAA--PKPKFVWKKDGNIIGSGGRR---KI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 104 g~~v~l~C~~~~~--p~~~i~W~~~g~~~~~~~~~---~~-----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
|+.+.|.|.+.+. |.+.+.|.+++..+...... .. .....|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 78899999877654321110 00 11246999999999999999999999999888887
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.3e-10 Score=75.40 Aligned_cols=63 Identities=29% Similarity=0.522 Sum_probs=52.1
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+|++++|.|.+.+.+.+.+.|++++..+. ...+.......|.|.+++ ..|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-------~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-------ESNRLSASGSTLTIKSVS-LEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-------CCCEEecCCcEEEEeeCC-cccCEEEEEEEecCCC
Confidence 58999999998888889999999998776 122333456799999999 9999999999987643
|
|
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=80.69 Aligned_cols=67 Identities=34% Similarity=0.669 Sum_probs=54.0
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecC--CCcEEEeeCCCEEEcCCCC-CCCEEEEEEEEcCCCceee
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~~~~~l~i~~v~~-~d~G~y~C~~~~~~g~~~~ 170 (505)
.|+++.|.|.+.|.|.+.++|++++..+.. ..+. ...++.|.|.++.. .|+|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY-SLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE-EEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 346899999999999999999999998843 2233 23467899988874 8999999999999997654
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-10 Score=79.91 Aligned_cols=78 Identities=17% Similarity=0.356 Sum_probs=58.3
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCE--ECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE-cccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGE--LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK-NQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~--~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~-~~~~~~~~~ 78 (505)
.+|++++|.|.. +.|.+.+.|+|.+. .... ......++....++|.|.+++ .+|+|.|+|.+. +..+.....
T Consensus 9 ~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~---~~~~~~r~~~~~~~L~I~~~~-~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 9 VENNSTFLECLP-KSPQASVKWLFQRGGDQRKE---EVKTEERLIHTERGLLLRSLQ-RSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred ecCCcEEEEEEC-CCCCceEEEEEECCCCCccc---cccccccEEEecCeEEEeeCC-hhHCEEEEEEEEccCCeEEEEE
Confidence 589999999997 47889999999432 2111 011345777777889999999 999999999998 455556666
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 777765
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=79.69 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCCCCceEEEEEEe------cc-----CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAF------GV-----PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~------~~-----p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|+.+.|.|... ++ ....+.|+|++..+...........|+...+..|.|.++. .+|+|.|+|.+.
T Consensus 12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~-~eDSG~Y~C~~r 90 (104)
T cd05896 12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAE-LQDSGLYTCVLR 90 (104)
T ss_pred EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCC-hhhCeEEEEEEC
Confidence 46899999999972 11 2358999999865553321111224888899999999999 999999999999
Q ss_pred cccCceEeeEEEEE
Q psy14886 70 NQLKTRYSSAQLRV 83 (505)
Q Consensus 70 ~~~~~~~~~~~l~v 83 (505)
|........+.|+|
T Consensus 91 N~t~C~~~~i~l~V 104 (104)
T cd05896 91 NSTYCMKVSMSLTV 104 (104)
T ss_pred CCCcceEEEEEEEC
Confidence 98777766666554
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-10 Score=78.97 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=61.4
Q ss_pred EEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 99 TYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
..+.+|.+..|.|...+ .|.+.+.|+|+++++....+.. ..++.|.|.++..+|+|.|+|.+.+..+.....+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 45778999999998643 2567999999999987654433 36778999999999999999999999887776654
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
..+
T Consensus 84 ~t~ 86 (92)
T cd05757 84 RTI 86 (92)
T ss_pred EEE
Confidence 443
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.7e-10 Score=79.26 Aligned_cols=75 Identities=29% Similarity=0.518 Sum_probs=60.6
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
....+.+|++++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4456889999999999865 678899999988664321 12335689999999999999999999999988877655
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=77.89 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=62.1
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ...|.|.++..+|.|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 346789999999999999999999999998876443332211 1258899999999999999999999988777766
Q ss_pred EE
Q psy14886 175 IV 176 (505)
Q Consensus 175 ~v 176 (505)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=79.76 Aligned_cols=71 Identities=32% Similarity=0.546 Sum_probs=56.5
Q ss_pred ceEEeeCCCeEEEEee-cCCCCCCeEEEEECCEEe--cCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNII--GSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~~~--~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
....+.+|+.+.|.|. ..|.|.+.+.|++++.++ ..+.+..+. .+|.|.|.+|..+|+|.|+|.|.|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3356889999999997 467799999999998754 233444343 4789999999999999999999987543
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-10 Score=81.36 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=54.1
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|+.+.|.|.. .|.|.+.|.|++++.++... .+..++.. .++.|.|.+++ .+|+|.|+|.|.|....
T Consensus 15 v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~----~d~r~~~~~~~G~L~fs~v~-~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 15 VKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP----EDGRRFVSQTNGNLYIAKVE-ASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc----cCCCeEEeCCCCcEEEeecC-HhhCceeEEEEEecccC
Confidence 4689999999987 56899999999998764321 12334444 36999999999 99999999999986543
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.7e-10 Score=78.04 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCceEEEEEEeccC--CCeEEEEECCEECcCCCCCCC---CCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 4 QADLTWTCEAFGVP--DVTYSWFRNGELLNSETLPLE---DQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 4 G~~~~l~C~~~~~p--~~~~~W~~~~~~l~~~~~~~~---~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|++++|.|.+.+.+ ...+.|.+++..+........ .........++|.|.+++ .+|+|.|+|.|.|..+.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~-~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVT-LSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCC-cccCEEEEEEEeecceEeccc
Confidence 89999999998754 578899998765432110000 000001234789999999 999999999999988877777
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888776
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.7e-10 Score=79.28 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=59.7
Q ss_pred ceEEeeCCCeEEEEee-cCCCCCCeEEEEECCEE-ecCCCcEEEeeCCCEEEcCCCCCCCE-EEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNI-IGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~~-~~~~~~~~~~~~~~l~i~~v~~~d~G-~y~C~~~~~~g 166 (505)
..+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.++.+..+|.|.|.++..+|.| .|.|.|.+...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 4577999999999997 69999999999987654 44566777777899999999999999 79999998653
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=77.46 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=59.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC----CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC-Cceeee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----GRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMDESK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~----~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~-g~~~~~ 171 (505)
....+.+|+++.|.|.+.+ |.+.+.|++++..+... .+... ..+.|.|.+++.+|+|.|.|.|.+.. +....+
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 3456889999999999977 77899999999876543 23322 34569999999999999999998654 444445
Q ss_pred EEEEEE
Q psy14886 172 GRLIVL 177 (505)
Q Consensus 172 ~~l~v~ 177 (505)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 666653
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=79.29 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=58.0
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECC--------EEecCCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--------NIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--------~~~~~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..++.+.+|+++.|.|.+.+.|.+.+.|++.+ .....+.++.... ..+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 35678999999999999999999999998632 2222334554422 23699999999999999999987
Q ss_pred CCCceeeeEEEEE
Q psy14886 164 VHGMDESKGRLIV 176 (505)
Q Consensus 164 ~~g~~~~~~~l~v 176 (505)
..+ ....+.|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 433 344555543
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=77.48 Aligned_cols=74 Identities=26% Similarity=0.397 Sum_probs=54.8
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCC----cEEEe---eCCCEEEcCCCCCCCEEEEEEEEcCCC--ceeeeEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----RRKIF---ENGNLLISPVSRDDSGIYSCTATNVHG--MDESKGRL 174 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~----~~~~~---~~~~l~i~~v~~~d~G~y~C~~~~~~g--~~~~~~~l 174 (505)
|++++|.|.+.+.|.+.+.|+++++...... +..+. ....|.|.+++.+|+|.|.|.|.|..+ .....+.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432211 11111 134699999999999999999998766 55556666
Q ss_pred EEE
Q psy14886 175 IVL 177 (505)
Q Consensus 175 ~v~ 177 (505)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 663
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=77.27 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=57.5
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe--------cCCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+..+.+|+++.|.|.+.+.|.+.+.|++++..+ ..+.++.+.. ..+|.|.++..+|.|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 35577999999999999999999999999876532 1223443321 23699999999999999999986
Q ss_pred CCCceeeeEEEE
Q psy14886 164 VHGMDESKGRLI 175 (505)
Q Consensus 164 ~~g~~~~~~~l~ 175 (505)
....++.+.|+
T Consensus 84 -~~~~~~~~~~~ 94 (95)
T cd05882 84 -MPVRTAKATVT 94 (95)
T ss_pred -eccccEEEEEE
Confidence 22333344443
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=74.25 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=52.1
Q ss_pred ceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 6 ~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+.|+|... ++|+++|+||||+++|....... ..++.....++|.|...+ .+|.+.|+|.|.|.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~-~~~~~~t~~s~L~~~~~~-~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ-ENGKTVSVSNTIRFPVDR-KDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccc-cCCceEEEEEEEEEEeee-ccCCcEEEEEEEChhhCC
Confidence 478999996 48999999999999997532211 223333345689999999 999999999999987653
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-10 Score=79.49 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=50.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCC-------CCCCCCcEEEE-------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL-------PLEDQDRYFIQ-------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~-------~~~~~~~~~~~-------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+++|++|+|.|.+.+.+.+.+.|+++++....... .....+|+... ..+|.|.+++ .+|+|.|.|
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~-~sDsgtY~C 82 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLK-IEDSDTYIC 82 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCC-HHHCEEEEE
Confidence 46899999999998888899999987643211100 00112222221 2469999999 999999999
Q ss_pred EEEcccCc
Q psy14886 67 RAKNQLKT 74 (505)
Q Consensus 67 ~~~~~~~~ 74 (505)
.+.|..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99876543
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.4e-10 Score=76.81 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=51.4
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCC----cEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGG----RRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~----~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
+.|.|.+.+ .|.+.+.|+++|+.+.... ++.... .+.|.|.++...|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999864 5778999999998885321 222221 246999999999999999999999998776653
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=75.59 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=61.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecC--CCcEEEeeC-------CCEEEcCCCCCC-CEEEEEEEEcCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGS--GGRRKIFEN-------GNLLISPVSRDD-SGIYSCTATNVH 165 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~--~~~~~~~~~-------~~l~i~~v~~~d-~G~y~C~~~~~~ 165 (505)
....+.+|+++.|.|.+.+.|.| .|.|..++..+.. ..++.+... .+|.|.++...| .|.|.|.|.|..
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 45678899999999999888876 7899888776644 345655432 259999998766 799999999999
Q ss_pred CceeeeEEE
Q psy14886 166 GMDESKGRL 174 (505)
Q Consensus 166 g~~~~~~~l 174 (505)
|.....+.|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 998777655
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=78.86 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECc-CCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~-~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|++++|.|.+.+.+.+.+.|++.+..+. ..........|+.+ ...+|.|.+++ .+|+|.|+|.+.+.. .
T Consensus 9 v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~~~~~~-~ 86 (95)
T cd05717 9 VVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVS-LSDEGRYTCSLYTMP-V 86 (95)
T ss_pred EcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCC-cccCEEEEEEEecCC-C
Confidence 4689999999999887788999987433211 00000012346654 23579999999 999999999998654 2
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
....+.|.|
T Consensus 87 ~~~~~~~~v 95 (95)
T cd05717 87 QTAKATVTV 95 (95)
T ss_pred ceEEEEEEC
Confidence 344555543
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-09 Score=75.30 Aligned_cols=60 Identities=23% Similarity=0.363 Sum_probs=52.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|+++.|.|...+. .+.+.|++|+.++. .+.++......|.|.+++ .+|+|.|.|.+.
T Consensus 8 v~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~-------~~~r~~~~~~GLlI~~~~-~~dsG~Y~C~s~ 67 (85)
T cd05872 8 VAPGADVVLPCQLRSN-LASPVWLFNGTPLN-------AQFSYRVGTDGLLILVTS-PEHSGTYRCYSE 67 (85)
T ss_pred EecCCCEEEECCCCCC-CccEEEEECCcccC-------CCcceEEeCCCCEEEECC-HhhCEEEEEEEe
Confidence 4689999999999764 67999999999986 346777777789999999 999999999987
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=75.12 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=53.7
Q ss_pred EEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 99 TYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
..+.+|++++|.|.+.+ .+...+.|+++|..+... .....|.|.+++.+|+|.|+|.+.+..+...+
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 35889999999999854 456689999999866421 12457999999999999999999998875543
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=70.79 Aligned_cols=63 Identities=40% Similarity=0.679 Sum_probs=51.6
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+|+++.|.|.+.+.+.+.+.|++++..+. ...........|.|.++...|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999998888888999999998876 2223333455799999999999999999988654
|
|
| >PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.3e-09 Score=74.58 Aligned_cols=83 Identities=33% Similarity=0.513 Sum_probs=65.9
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC-eEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
+|.++.+..++.+++.|+|.++...+..+..|.|+++...... |....... ....+.+. +|.|++.|.|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~---------~~~~~~i~-~L~p~t~Y~~ 71 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPG---------NETSYTIT-GLQPGTTYEF 71 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEET---------TSSEEEEE-SCCTTSEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeee---------eeeeeeec-cCCCCCEEEE
Confidence 5778999999999999999999877888999999999887665 44433221 22344555 4999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|++|
T Consensus 72 ~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 72 RVRAVNSDGEGPPS 85 (85)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEeCCcCcCCC
Confidence 99999999988653
|
They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A .... |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-09 Score=75.10 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=58.4
Q ss_pred CCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEEE--------CCeEEEEcCCCCCC-CeEEEEEEEcc
Q psy14886 2 DNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQ--------DNVLTIRYLNPERD-PAMYQCRAKNQ 71 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~~d-~G~Y~C~~~~~ 71 (505)
.+|+.++|.|.+.+.|. ..|.|..++..|... ..+++.+. .+.|.|.++. ..| .|.|.|.|.|.
T Consensus 14 ~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~-----~~~r~~I~~~~~~~g~~S~L~I~~~~-~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 14 VRGERGKVKCFIGSTPPPDRIAWAWKENVLESG-----TSERYTVERTSTGSGVLSTLTINNIM-EADFQTHYNCTAWNS 87 (98)
T ss_pred eCCCcEEEEEEEccCCCCcEEEEEEccccccCC-----CCCCEEEEEEccCCCcEEEEEECCCc-cccCCcEEEEEEEeC
Confidence 58999999999977665 568999988776532 34577663 3589999998 766 79999999999
Q ss_pred cCceEeeEEE
Q psy14886 72 LKTRYSSAQL 81 (505)
Q Consensus 72 ~~~~~~~~~l 81 (505)
.|.....+.|
T Consensus 88 ~G~d~~~i~L 97 (98)
T cd05898 88 FGSGTAIIQL 97 (98)
T ss_pred CccceEEEEe
Confidence 9998776655
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-09 Score=76.66 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=53.8
Q ss_pred CCCCCceEEEEE-EeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCe-EEEEEEEccc
Q psy14886 1 MDNQADLTWTCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPA-MYQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~-~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G-~Y~C~~~~~~ 72 (505)
|.+|+.+.|.|. ..|.|.+.|.|++++..... ...|+.+ .++.|.|.+++ ..|+| .|.|.|.|..
T Consensus 15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~------~~~Ri~~~~~GnL~fs~v~-~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT------QDERVSMGQNGNLYFANVE-EQDSHPDYICHAHFPG 82 (95)
T ss_pred EecCCCEEEEecCCCCCCCCEEEEECCCCcccc------ccccEEECCCceEEEEEEe-hhhCCCCeEEEEEccc
Confidence 578999999997 58899999999987654321 3467776 46999999999 99999 8999999865
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.1e-09 Score=74.00 Aligned_cols=68 Identities=18% Similarity=0.436 Sum_probs=52.4
Q ss_pred CCCCCceEEEEEE-ec----cCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEA-FG----VPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.+|.+..|.|.- .+ .+.+.++||||+.++.. ...++.. ..+.|.|.++. .+|+|.|+|.+.+..+
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~------~~~~~~~~~~~~~L~I~~v~-~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK------DNEKFYSLKGSTYLHIIDVS-LNDSGYYTCKLQFTHE 79 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC------CCcceEecCCCCEEEEEEcC-hhhCEEEEEEEEEeeC
Confidence 3578999999973 22 35689999999999863 2233433 34689999999 9999999999998765
Q ss_pred ce
Q psy14886 74 TR 75 (505)
Q Consensus 74 ~~ 75 (505)
..
T Consensus 80 g~ 81 (95)
T cd05897 80 GK 81 (95)
T ss_pred CE
Confidence 54
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=72.73 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=62.3
Q ss_pred CCCCCceEEEEEEeccCCCe-EEEEECCEECcCCCCCCCCCCcE--EEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRY--FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~-~~W~~~~~~l~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|++|+++.|.|.++++|.+. +.|.+++..+............. ..-.+.|.+..++ .+|+|.|+|.|.|.......
T Consensus 15 v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk-~~E~G~YTf~a~N~~~~~s~ 93 (101)
T cd05860 15 VNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLK-GTEGGTYTFLVSNSDASASV 93 (101)
T ss_pred EECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecC-hhhCcEEEEEEECCCCeEEE
Confidence 57899999999999999987 99999988765332110000000 0023689999999 99999999999999888877
Q ss_pred eEEEEEE
Q psy14886 78 SAQLRVL 84 (505)
Q Consensus 78 ~~~l~v~ 84 (505)
.+.|.|.
T Consensus 94 tF~l~v~ 100 (101)
T cd05860 94 TFNVYVN 100 (101)
T ss_pred EEEEEEe
Confidence 7777764
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=71.95 Aligned_cols=78 Identities=26% Similarity=0.460 Sum_probs=57.1
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEe----cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE-cCCCceee
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNII----GSGGRRKIFENGNLLISPVSRDDSGIYSCTAT-NVHGMDES 170 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~----~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~-~~~g~~~~ 170 (505)
.+.+.+|+++.|.|.. +.|.+.+.|++. +... ....+.. ...+.|.|.++..+|+|.|+|.+. +..+....
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 3567899999999996 478889999983 2221 1223333 345679999999999999999998 45565666
Q ss_pred eEEEEEE
Q psy14886 171 KGRLIVL 177 (505)
Q Consensus 171 ~~~l~v~ 177 (505)
.+.|+|.
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 6777664
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-09 Score=71.65 Aligned_cols=57 Identities=28% Similarity=0.465 Sum_probs=43.8
Q ss_pred CCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-E-CC----eEEEEcCCCCCCCeEEEEEE
Q psy14886 4 QADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-Q-DN----VLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 4 G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~-~~----~L~i~~~~~~~d~G~Y~C~~ 68 (505)
|+.++|.|.+ .+.+...+.|+|++..+.. ...... . .. .|.|.+++ .+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE-------GSTTNRSTNSVSSTSRLTISNVT-PEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSE-------EEEEEEEETTTEEEEEEEESSCT-GGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccC-------cceeEeecccceeeeEEEEccCC-HHHCEEEEEEC
Confidence 8999999999 6677899999999876552 111111 1 22 29999999 99999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=73.24 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=56.1
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEE-e-------cCCCcEEEe----eCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI-I-------GSGGRRKIF----ENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~-~-------~~~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
...+.+.+|++++|.|.+.+.+.+.+.|++.+.. + ..+.++... ....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 4567799999999999998888889999863221 1 122344442 123599999999999999999987
Q ss_pred CCCceeeeEEEE
Q psy14886 164 VHGMDESKGRLI 175 (505)
Q Consensus 164 ~~g~~~~~~~l~ 175 (505)
... ..+.+.|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 643 34445444
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-09 Score=72.72 Aligned_cols=69 Identities=30% Similarity=0.548 Sum_probs=53.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc-eEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT-RYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~ 79 (505)
|.+|++++|.|.+.+.|...+.|++++..+..+ ...+.+.++. .+|+|.|+|.+.+..+. ....+
T Consensus 11 v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-------------~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 11 VEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-------------QNGLFIPNVS-PEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp EETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-------------SSEEEESSEE-GGGTEEEEEEEEETTEEEEEEEE
T ss_pred EeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-------------eeeeeeeeec-cccCEEEEEEEEeCCCCeEeeeE
Confidence 468999999999999888999999998877621 2237778889 99999999999985543 33344
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 4443
|
... |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=70.38 Aligned_cols=75 Identities=28% Similarity=0.597 Sum_probs=58.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC-CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~-~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.+.+...+.|+++ +..+. ...++... ..+|.|.+++ ..|+|.|+|.+.+..+..
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVT-PEDSGTYTCAATNSSGSA 77 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeec-cccCeEEEEEEEcCCCeE
Confidence 35899999999998877899999998 77775 23344332 2589999999 999999999999877766
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00410 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 66655554
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=70.38 Aligned_cols=75 Identities=28% Similarity=0.597 Sum_probs=58.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC-CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~-~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.+.+...+.|+++ +..+. ...++... ..+|.|.+++ ..|+|.|+|.+.+..+..
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVT-PEDSGTYTCAATNSSGSA 77 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeec-cccCeEEEEEEEcCCCeE
Confidence 35899999999998877899999998 77775 23344332 2589999999 999999999999877766
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00409 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 66655554
|
|
| >KOG0196|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-07 Score=87.53 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=101.5
Q ss_pred cCCeEEEecCCCCCCEEEEEEEEecCCc------EEEEEEEEE-cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCce
Q psy14886 239 DGGLLEITNASFADAGEYECVVKSTVGK------ISTKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 311 (505)
Q Consensus 239 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~------~~~~~~l~v-~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~ 311 (505)
......+..+.....+.|...|.|.... ....+.++. +..|.+...++......++++|+|..|...++.|..
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ild 475 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILD 475 (996)
T ss_pred ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCccee
Confidence 4567888889888888888898886543 223334433 455667778999999999999999999888888999
Q ss_pred EEEEEEeCC--CCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCC
Q psy14886 312 YKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384 (505)
Q Consensus 312 y~v~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~ 384 (505)
|+|+|.... ......+... .....+.+ |.|++.|.|+|+|...+|.|..|... .++|.+.
T Consensus 476 YEvky~ek~~~e~~~~~~~t~-----------~~~~ti~g-L~p~t~YvfqVRarT~aG~G~~S~~~-~fqT~~~ 537 (996)
T KOG0196|consen 476 YEVKYYEKDEDERSYSTLKTK-----------TTTATITG-LKPGTVYVFQVRARTAAGYGPYSGKH-EFQTLPS 537 (996)
T ss_pred EEEEEeeccccccceeEEecc-----------cceEEeec-cCCCcEEEEEEEEecccCCCCCCCce-eeeecCc
Confidence 999998874 3333333322 23566666 99999999999999999999999886 6777654
|
|
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-08 Score=69.06 Aligned_cols=79 Identities=35% Similarity=0.643 Sum_probs=63.3
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC-CEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 35678999999999998887889999998 877764455555444 46999999999999999999988777666665
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 554
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-08 Score=69.06 Aligned_cols=79 Identities=35% Similarity=0.643 Sum_probs=63.3
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC-CEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 35678999999999998887889999998 877764455555444 46999999999999999999988777666665
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 554
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-09 Score=69.42 Aligned_cols=58 Identities=33% Similarity=0.647 Sum_probs=45.5
Q ss_pred CCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCCC-----EEEcCCCCCCCEEEEEEE
Q psy14886 104 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 104 g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~-----l~i~~v~~~d~G~y~C~~ 161 (505)
|++++|.|.+ .+.+...+.|++++..............+. |.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 667788999999987655433333333332 999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-08 Score=70.02 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=57.6
Q ss_pred EEeeCCCeEEEEeecC------C-----CCCCeEEEEECCEEecCCC------cEEEeeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPE------A-----APKPKFVWKKDGNIIGSGG------RRKIFENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~------~-----~p~~~i~W~~~g~~~~~~~------~~~~~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
..+.+|+.+.|.|... + .....+.|+|++..+.... ......+..|.|.++..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 5688999999999862 1 1234899999975554322 122334667999999999999999999
Q ss_pred EcCCCceeeeEEEEE
Q psy14886 162 TNVHGMDESKGRLIV 176 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v 176 (505)
.|.......++.|+|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 998877666666553
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-08 Score=70.85 Aligned_cols=89 Identities=24% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|.++.+......++.|.|+++.. .++.+..|.|.|+..+...|....... .....+.+.+|.|++.|.|+|.|.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPED--DGGPITGYVVEYREKGSGDWKEVEVTP---GSETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCC--CCCcceeEEEEEeeCCCCCCEEeeccC---CcccEEEEccccCCCEEEEEEEEE
Confidence 566677766668999999998433 336788999999987656666554431 234678899999999999999999
Q ss_pred cCCCCCCCCceEEE
Q psy14886 469 NDVGPGPESEVVTI 482 (505)
Q Consensus 469 n~~G~g~~s~~~~~ 482 (505)
+..|.|+++....+
T Consensus 78 ~~~~~~~~s~~~~~ 91 (93)
T cd00063 78 NGGGESPPSESVTV 91 (93)
T ss_pred CCCccCCCcccccc
Confidence 99999988874433
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.1e-08 Score=68.48 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=58.7
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc---cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEE
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 271 (505)
|+++.|.|.+.+.+.+.+.+.|..++........... .........+.|.|.+++..|+|.|+|.|.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 6789999999988777788899887654322110000 0011122346899999999999999999999988887777
Q ss_pred EEEEc
Q psy14886 272 TVIVE 276 (505)
Q Consensus 272 ~l~v~ 276 (505)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77764
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=67.90 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=65.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCe-EEEEECCEEecCCCc--EEEee------CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGR--RKIFE------NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~-i~W~~~g~~~~~~~~--~~~~~------~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
....+.+|+++.|.|.++.+|.|+ +.|.+++..+..... ..... ...|.+..+..+|.|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456799999999999999999996 999998876543222 21111 135999999999999999999999999
Q ss_pred eeeeEEEEEE
Q psy14886 168 DESKGRLIVL 177 (505)
Q Consensus 168 ~~~~~~l~v~ 177 (505)
...++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9988888764
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-08 Score=68.14 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=47.8
Q ss_pred ceEEEEEEec-cCCCeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 6 DLTWTCEAFG-VPDVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 6 ~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+.|.|.+.| .|.+.|+|+|+|+++....... ...+......+.|.|.... .+|.|.|+|.|.|....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSD-HDTGRTFTCRARNEALP 71 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCce-ecCCCEEEEEEcCccCC
Confidence 3689999987 6888999999999886331100 0112222333578888888 78899999999986644
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=68.82 Aligned_cols=71 Identities=35% Similarity=0.616 Sum_probs=54.5
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCc-eeeeEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~-~~~~~~l~v 176 (505)
..+.+|+++.|.|.+.+.|...+.|++++..+.... +.+.+.++..+|.|.|+|.+.+..+. .+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 458899999999999988889999999987776321 12778889999999999999986543 233344443
|
... |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.3e-08 Score=74.93 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCceEEEEEEec---cCCCeEEEEECC----E-ECcC-----CCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEE
Q psy14886 2 DNQADLTWTCEAFG---VPDVTYSWFRNG----E-LLNS-----ETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 2 ~~G~~~~l~C~~~~---~p~~~~~W~~~~----~-~l~~-----~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y 64 (505)
..|++++|.|...- .+...|.|+|.+ . -+.. ...+....+++.+ .+-+|.|.+++ .+|.|.|
T Consensus 24 ~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~-lSDdGtY 102 (221)
T PHA03376 24 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAAN-ISHDGNY 102 (221)
T ss_pred eeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeee-ecCCceE
Confidence 47999999999862 346789999942 1 1110 0112234455554 23479999999 9999999
Q ss_pred EEEEEcccCceEeeEE--------EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECC
Q psy14886 65 QCRAKNQLKTRYSSAQ--------LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127 (505)
Q Consensus 65 ~C~~~~~~~~~~~~~~--------l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g 127 (505)
+|.++.........-. |.|.+....|.. -+..++.|...|.|.|.+.|..+.
T Consensus 103 ~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~-----------~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 103 LCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-----------FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred EEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC-----------CCeeEEEEecCCcCCchheecccc
Confidence 9999865443333222 334432222222 345689999989999999998754
|
|
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=68.54 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=54.5
Q ss_pred EEeeCCCeEEEEeec-C----CCCCCeEEEEECCEEecCCCc-EEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 99 TYAGEGGNVTIFCNP-E----AAPKPKFVWKKDGNIIGSGGR-RKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~-~----~~p~~~i~W~~~g~~~~~~~~-~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
..+..|.+..|.|.- . ..+.++++|+|++.++..+.. .... ....|.|.++..+|+|.|+|.+.+..+...-.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 346778899999972 2 335679999999999875443 2222 23469999999999999999999987655433
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=66.04 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=52.4
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
...+..|+++.|.|...+. .+.+.|+++|..+..+.+...... .|.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~-GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD-GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC-CCEEEECCHhhCEEEEEEEe
Confidence 4568899999999998765 669999999999877666555444 47799999999999999987
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >KOG4802|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=81.47 Aligned_cols=136 Identities=25% Similarity=0.282 Sum_probs=87.8
Q ss_pred eEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccC-CCCCCCCCCceeeeecccc---ccEEEEEEeCCccccCCCCc
Q psy14886 345 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGGKI---GDLSISWEPLPREKQNAPNI 420 (505)
Q Consensus 345 ~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t-~~~~p~~~P~~~~~~~~~~---~~v~l~W~~~~~~~~~~~i~ 420 (505)
.++..++.|+..|+||+.|+|..|.-.+++++..+.. ....+|.+|.++.+..... -...|.|.|+ ....++.
T Consensus 210 ~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~---~sdlPv~ 286 (516)
T KOG4802|consen 210 TYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS---KSDLPVE 286 (516)
T ss_pred eeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC---CCCCcce
Confidence 5666669999999999999999988667766655443 3344555777777643221 1377788763 4456799
Q ss_pred eEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC--CceEEEee
Q psy14886 421 YYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE--SEVVTIWH 484 (505)
Q Consensus 421 ~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~--s~~~~~~t 484 (505)
.|.|.|...- ..+-.+.......- ....+.|++|.|+..|.|.|.|..-.|.+.. -+.+.|.+
T Consensus 287 ~Yki~Ws~~v~s~k~~m~tks~~~k-~thq~si~~L~Pns~Y~VevqAi~y~g~~rLksek~~~F~~ 352 (516)
T KOG4802|consen 287 KYKITWSLYVNSAKASMITKSSYVK-DTHQFSIKELLPNSSYYVEVQAISYLGSRRLKSEKWMLFNT 352 (516)
T ss_pred eeEEEeehhhhhhhhhcccccceee-ccchhhhhhcCCCCeEEEEEEEEEeccCcccccceEEEEee
Confidence 9999997532 11111111110000 0113349999999999999999999998743 24455543
|
|
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.1e-08 Score=68.79 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=50.2
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEe-c-C------------CCcEEEee----C--CCEEEcCCCCCCCEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-G-S------------GGRRKIFE----N--GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~-~-~------------~~~~~~~~----~--~~l~i~~v~~~d~G~y~C 159 (505)
.+.+|++|+|.|.+.+.+.+.+.|+++++.. . . .+++.... . ..|.|.++..+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999998888999999766332 1 1 11111111 1 249999999999999999
Q ss_pred EEEcCCCce
Q psy14886 160 TATNVHGMD 168 (505)
Q Consensus 160 ~~~~~~g~~ 168 (505)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 998865543
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=67.25 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECc-CCCCCCCCCCcEEEEC-----CeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQD-----NVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~-~~~~~~~~~~~~~~~~-----~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
+.+|++++|.|.+.+.....+.|++.+..+- ..........|+.... .+|.|.+++ .+|+|.|.|.+..
T Consensus 9 v~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq-~~D~G~Y~Cqv~t 83 (95)
T cd05881 9 VVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVS-LSDEGRYFCQLYT 83 (95)
T ss_pred EcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCC-cccCEEEEEEEEc
Confidence 4689999999999887777889998664331 1111111345665422 369999999 9999999999874
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=69.06 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=49.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE-----ECc----CC---CCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE-----LLN----SE---TLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~-----~l~----~~---~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|+++.|.|.....+...+.|+|+.. .+. .. ......++|..+ .+++|.|.+++ .+|+|.|+|.
T Consensus 10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~-~~D~G~Y~~~ 88 (105)
T cd05774 10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVT-QKDTGFYTLQ 88 (105)
T ss_pred ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCC-cccCEEEEEE
Confidence 4689999999986433456899999632 110 00 000012455555 56899999999 9999999999
Q ss_pred EEccc
Q psy14886 68 AKNQL 72 (505)
Q Consensus 68 ~~~~~ 72 (505)
+.+..
T Consensus 89 v~~~~ 93 (105)
T cd05774 89 TITTN 93 (105)
T ss_pred EEeCC
Confidence 98766
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=69.24 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=50.6
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCC-----------CCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSE-----------TLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~-----------~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|++|+|.|.+...+...|.|+|+....... ......++|+.+ .+++|.|.+++ .+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~-~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLT-KEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCC-chhcEEEEEEEEcC
Confidence 899999999876566789999976433211 000123355555 56899999999 99999999999876
Q ss_pred cCc
Q psy14886 72 LKT 74 (505)
Q Consensus 72 ~~~ 74 (505)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 533
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=69.67 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=57.4
Q ss_pred CCCceEEEEEEeccC------CCeEEEEECCE------E-C-cCCC---CCCCCCCcEEEE-----CCeEEEEcCCCCCC
Q psy14886 3 NQADLTWTCEAFGVP------DVTYSWFRNGE------L-L-NSET---LPLEDQDRYFIQ-----DNVLTIRYLNPERD 60 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p------~~~~~W~~~~~------~-l-~~~~---~~~~~~~~~~~~-----~~~L~i~~~~~~~d 60 (505)
.|++++|.|.+...| ...|.|+|... . + .... ......+|+... ..+|.|.+++ .+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~-~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLR-LED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCC-hHH
Confidence 499999999987642 36799999531 0 0 1000 001123566552 3589999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
+|.|+|.+.+..+.....+.|.|..
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999998877777778887764
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=64.60 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=47.2
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCCc-----EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGGR-----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~-----~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+.|.|...+ .|.++|+|+++++.+..... ......++|.|.....+|++.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999754 58889999999999864221 111123468999999999999999999987654
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=68.86 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=56.7
Q ss_pred CCCceEEEEEEeccC------CCeEEEEECC-----E-ECc--CC-CCC--CCCCCcEEE-----ECCeEEEEcCCCCCC
Q psy14886 3 NQADLTWTCEAFGVP------DVTYSWFRNG-----E-LLN--SE-TLP--LEDQDRYFI-----QDNVLTIRYLNPERD 60 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p------~~~~~W~~~~-----~-~l~--~~-~~~--~~~~~~~~~-----~~~~L~i~~~~~~~d 60 (505)
.|++++|.|.+...+ ...|.|+|.. . .+. .. ... .....|+.. .+.+|.|.+++ .+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLR-LED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCC-HHH
Confidence 489999999997642 5789999962 1 111 00 000 012223332 34789999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
+|.|+|.+.+..+.....+.|.|..
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999998777677778888764
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-07 Score=62.33 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=51.2
Q ss_pred ceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc-eEeeEEEEE
Q psy14886 6 DLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT-RYSSAQLRV 83 (505)
Q Consensus 6 ~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 83 (505)
.+.|.|.+.| .|++.|+|+|++.++...........+-....++|.|..-. .+|...|+|.|.|..-. ......|.|
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~-eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTK-EDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECch-hhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 3789999976 78999999999999975321110111222234678887666 66666899999986532 333455555
Q ss_pred E
Q psy14886 84 L 84 (505)
Q Consensus 84 ~ 84 (505)
.
T Consensus 80 ~ 80 (82)
T cd05883 80 Q 80 (82)
T ss_pred E
Confidence 4
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=68.17 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|.+|++|+|.|... .+...+.|+|+|....... .......+.+.|.+++ .+|+|.|+|.+.+.
T Consensus 13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~------~~~~~~~~~f~i~~v~-~~~~G~Y~C~~~~~ 75 (91)
T cd05751 13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK------PPEPQNKAKFFIPSMK-REHAGRYRCYYRSG 75 (91)
T ss_pred cCCCCcEEEEEecC-CCCCEEEEEECCCCccccc------cCCCceeEEEEccCCC-hhHCEEEEEEEECC
Confidence 57999999999885 5678899999987544210 0111234679999999 99999999999875
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.9e-07 Score=66.42 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCCceEEEEEEeccC------------CCeEEEEEC--CE-E--CcCCCC----CCCCCCcEEE-------ECCeEEEEc
Q psy14886 3 NQADLTWTCEAFGVP------------DVTYSWFRN--GE-L--LNSETL----PLEDQDRYFI-------QDNVLTIRY 54 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p------------~~~~~W~~~--~~-~--l~~~~~----~~~~~~~~~~-------~~~~L~i~~ 54 (505)
.|++++|.|...... .+.|.|+|- ++ + +..... .....+|+.+ .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999996432 368999994 21 1 110000 0112246655 357999999
Q ss_pred CCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 55 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
++ .+|+|.|+|.+.+..........|.|..
T Consensus 81 l~-~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LR-SNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cc-cccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99 9999999999987655555566666653
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-06 Score=63.10 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=51.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe--------cCCCcEEEee-CC---CEEEcCCCCCCCEEEEEEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE-NG---NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~-~~---~l~i~~v~~~d~G~y~C~~~~ 163 (505)
.++.+.+|+++.|.|.+.+.....+.|++.+..+ ..+.|+.... ++ +|.|.+++.+|.|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4577999999999999988766678888755332 2345555443 22 499999999999999999975
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-07 Score=68.41 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=56.5
Q ss_pred CCCceEEEEEEeccC----------CCeEEEEECC--EECc-----CCC--CCCCCCCcEEE-------ECCeEEEEcCC
Q psy14886 3 NQADLTWTCEAFGVP----------DVTYSWFRNG--ELLN-----SET--LPLEDQDRYFI-------QDNVLTIRYLN 56 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p----------~~~~~W~~~~--~~l~-----~~~--~~~~~~~~~~~-------~~~~L~i~~~~ 56 (505)
-|++++|.|.....+ ...|.|+|.. +... ... ......+|+.+ ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997533 3779999952 1110 000 01112346654 23689999999
Q ss_pred CCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 57 PERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 57 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 -~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 -SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred -hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999988666677778887764
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-07 Score=67.38 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=48.4
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
..|..|++|+|.|... .+...+.|+++|..............+.|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4588999999999885 5566899999987543211101112345999999999999999999875
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-07 Score=65.68 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCceEEEEEEeccC---CCeEEEEECCE--EC---cCCC-----CCCCCCCcEEEE-------CCeEEEEcCCCCCCCeE
Q psy14886 4 QADLTWTCEAFGVP---DVTYSWFRNGE--LL---NSET-----LPLEDQDRYFIQ-------DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 4 G~~~~l~C~~~~~p---~~~~~W~~~~~--~l---~~~~-----~~~~~~~~~~~~-------~~~L~i~~~~~~~d~G~ 63 (505)
|++++|.|.+.... ...+.|+|... .+ .... ......+|+... ..+|.|.+++ .+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVR-ASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCC-hhhCEE
Confidence 89999999996321 35789998542 11 0000 001122455442 2589999999 999999
Q ss_pred EEEEEEcccCceEeeEEEEE
Q psy14886 64 YQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 64 Y~C~~~~~~~~~~~~~~l~v 83 (505)
|+|.+.+..+..+..+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999987666555566554
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-07 Score=65.89 Aligned_cols=67 Identities=28% Similarity=0.523 Sum_probs=51.2
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCE-----Eec--------------CCCcEEEeeCCCEEEcCCCCCCCEEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGN-----IIG--------------SGGRRKIFENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~-----~~~--------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+|+++.|.|.........+.|+|... .+. ..+|..+..+++|.|.+++..|+|.|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 47789999999976544445999999521 110 13466667788999999999999999999
Q ss_pred EEcCCC
Q psy14886 161 ATNVHG 166 (505)
Q Consensus 161 ~~~~~g 166 (505)
+.+...
T Consensus 89 v~~~~~ 94 (105)
T cd05774 89 TITTNF 94 (105)
T ss_pred EEeCCc
Confidence 998764
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-07 Score=67.68 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=54.8
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcCCCC----------CCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETL----------PLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~----------~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
..|++|+|.|.... .....+.|+|+...+..... .....+|+.+ .+.+|.|.+++ .+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~-~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLK-MEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCc-hHHCEEEEEEE
Confidence 37999999999864 44678999997543321111 0011235554 24789999999 99999999999
Q ss_pred EcccCce-EeeEEEEE
Q psy14886 69 KNQLKTR-YSSAQLRV 83 (505)
Q Consensus 69 ~~~~~~~-~~~~~l~v 83 (505)
....+.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 8766543 33555555
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-07 Score=71.37 Aligned_cols=84 Identities=13% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCC-----CCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSE-----TLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~-----~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|++|++++|.|... +.....+.|+|.++.+..- ...-..++|+.. ..++|.|.+++ .+|+|.|+|.+.
T Consensus 27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt-~sDeGcY~C~F~ 105 (189)
T PHA02987 27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVS-LKDNGCYTCIFN 105 (189)
T ss_pred EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCC-hhhCeEEEEEEE
Confidence 57999999999985 5557889999964422210 111112346664 56799999999 999999999986
Q ss_pred -cccC-ceEeeEEEEEEe
Q psy14886 70 -NQLK-TRYSSAQLRVLT 85 (505)
Q Consensus 70 -~~~~-~~~~~~~l~v~~ 85 (505)
-+.| .......|.|..
T Consensus 106 tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 106 TLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred ecCCCCCceeEEEEEEEc
Confidence 3455 666678888875
|
|
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=63.67 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCceEEEEEEeccC-CCeEEEEECCE----ECc------CCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 4 QADLTWTCEAFGVP-DVTYSWFRNGE----LLN------SETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 4 G~~~~l~C~~~~~p-~~~~~W~~~~~----~l~------~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|++++|.|...... ...|.|+|... .+. ........++|... .+.+|.|.+++ .+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~-~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVT-LEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCc-eeeeEEEEEE
Confidence 89999999986433 34799998432 110 00111112234333 34689999999 9999999999
Q ss_pred EE-cccCceEeeEEEEE
Q psy14886 68 AK-NQLKTRYSSAQLRV 83 (505)
Q Consensus 68 ~~-~~~~~~~~~~~l~v 83 (505)
+. ...|.....+.|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 86 46677776777776
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=63.83 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=52.5
Q ss_pred CceEEEEEEeccC---CCeEEEEECCEE----C---c---CCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEE
Q psy14886 5 ADLTWTCEAFGVP---DVTYSWFRNGEL----L---N---SETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 5 ~~~~l~C~~~~~p---~~~~~W~~~~~~----l---~---~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C 66 (505)
++++|.|.+...+ ...|.|+|.... + . .........+|.... +.+|.|.+++ .+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLR-LEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCC-cccCEEEEE
Confidence 5799999997643 457999995421 1 0 001111123454432 4689999999 999999999
Q ss_pred EEEc-ccCceEeeEEEEE
Q psy14886 67 RAKN-QLKTRYSSAQLRV 83 (505)
Q Consensus 67 ~~~~-~~~~~~~~~~l~v 83 (505)
.+.. ..|..+..+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9874 5677777777766
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=62.15 Aligned_cols=63 Identities=19% Similarity=0.516 Sum_probs=44.8
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCCcE-EEeeC-------CCEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRR-KIFEN-------GNLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~-~~~~~-------~~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
+.|.|.+.| .|.+.|+|+++|+.+...... ....+ ..|.+.....+|.|.|+|.|.|......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 689999987 588899999999987543211 11112 2477777777889999999998754443
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=62.66 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=53.1
Q ss_pred CceEEEEEEec-cC---CCeEEEEECC--E--ECc--CC----CCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 5 ADLTWTCEAFG-VP---DVTYSWFRNG--E--LLN--SE----TLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 5 ~~~~l~C~~~~-~p---~~~~~W~~~~--~--~l~--~~----~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
.+++|.|.... .| ..+|+|.|.. . .+. .. ...-...+|.... +++|.|.+++ .+|+|.|+
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~-~~D~G~Y~ 79 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLE-LEDEGVYI 79 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCc-cccCEEEE
Confidence 37899999974 23 2379999841 1 110 00 0111223555543 3799999999 99999999
Q ss_pred EEEEc-ccCceEeeEEEEEE
Q psy14886 66 CRAKN-QLKTRYSSAQLRVL 84 (505)
Q Consensus 66 C~~~~-~~~~~~~~~~l~v~ 84 (505)
|.+.+ ..|..+..+.|.|.
T Consensus 80 C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 80 CEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEEeCCCCCeEEEEEEEEC
Confidence 99998 67777777877763
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=64.97 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=46.7
Q ss_pred CCCCceEEEEEEecc----CCCeEEEEE---------------CCEECcCCCCCCCCCCcEEE------ECCeEEEEcCC
Q psy14886 2 DNQADLTWTCEAFGV----PDVTYSWFR---------------NGELLNSETLPLEDQDRYFI------QDNVLTIRYLN 56 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~----p~~~~~W~~---------------~~~~l~~~~~~~~~~~~~~~------~~~~L~i~~~~ 56 (505)
-.|++++|.|.+... +...|.|.+ +|..... ..-..++|... .+.+|.|.+++
T Consensus 11 ~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~--~~~~f~~Rv~f~g~~~~~daSI~I~nv~ 88 (116)
T cd05879 11 TVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYID--DVGPFKERIEWVGNPSRKDGSIVIHNLD 88 (116)
T ss_pred EcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecc--cccCccCceEEeCCCCcCeeEEEEccCC
Confidence 479999999999753 247899944 2222110 00112345543 34689999999
Q ss_pred CCCCCeEEEEEEEcccC
Q psy14886 57 PERDPAMYQCRAKNQLK 73 (505)
Q Consensus 57 ~~~d~G~Y~C~~~~~~~ 73 (505)
.+|+|.|+|.+.|.-.
T Consensus 89 -~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 89 -YTDNGTFTCDVKNPPD 104 (116)
T ss_pred -cccCEEEEEEEEcCCC
Confidence 9999999999997544
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=63.24 Aligned_cols=64 Identities=28% Similarity=0.507 Sum_probs=48.3
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEec------------------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIG------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~------------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
|++|+|.|.........|.|+++..... -..+..+..+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999998765566999998543211 0234445556789999999999999999998776
Q ss_pred Cc
Q psy14886 166 GM 167 (505)
Q Consensus 166 g~ 167 (505)
+.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 43
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-06 Score=60.61 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=54.0
Q ss_pred CceEEEEEEecc-CCCeEEEEECC----EECcCC------CCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 5 ADLTWTCEAFGV-PDVTYSWFRNG----ELLNSE------TLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 5 ~~~~l~C~~~~~-p~~~~~W~~~~----~~l~~~------~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
++++|.|..... ....|+|.|-. ..+..- .+.....+|.... +++|.|.+++ .+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~-~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVG-FSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCC-ccccEEEEEEE
Confidence 479999999743 34789999842 122100 1111223455543 6799999999 99999999997
Q ss_pred E-cccCceEeeEEEEE
Q psy14886 69 K-NQLKTRYSSAQLRV 83 (505)
Q Consensus 69 ~-~~~~~~~~~~~l~v 83 (505)
. .+.|....++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 5 67788888888876
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.2e-07 Score=66.59 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=50.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE---EC---cCC-CCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE---LL---NSE-TLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~---~l---~~~-~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.+.+.+...+.|+|... +. ... .......+|+.+. ..+|.|.+++ .+|+|.|.|.
T Consensus 10 ~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~ 88 (109)
T cd04983 10 VQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQ-LSDSAVYFCA 88 (109)
T ss_pred EcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCC-HHHCEEEEEE
Confidence 4689999999999877778999999532 10 000 0001234566542 3489999999 9999999999
Q ss_pred EEccc
Q psy14886 68 AKNQL 72 (505)
Q Consensus 68 ~~~~~ 72 (505)
+.+..
T Consensus 89 ~~~~~ 93 (109)
T cd04983 89 LSESG 93 (109)
T ss_pred EecCC
Confidence 98643
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=62.83 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=55.3
Q ss_pred CCceEEEEEEeccC-----------CCeEEEEEC-----CEECcCCCC----------CCCCCCcEEE-------ECCeE
Q psy14886 4 QADLTWTCEAFGVP-----------DVTYSWFRN-----GELLNSETL----------PLEDQDRYFI-------QDNVL 50 (505)
Q Consensus 4 G~~~~l~C~~~~~p-----------~~~~~W~~~-----~~~l~~~~~----------~~~~~~~~~~-------~~~~L 50 (505)
|++++|.|.+.-.| ...|.|++- ++......+ .....+|..+ .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997433 258999983 111111100 0113345554 24799
Q ss_pred EEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 51 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 51 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.|.+++ .+|+|.|+|.+..........+.|.|..
T Consensus 82 ~i~~v~-~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLR-ASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccc-cccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999 9999999999998776677777777764
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=63.66 Aligned_cols=69 Identities=28% Similarity=0.488 Sum_probs=48.7
Q ss_pred CCCceEEEEEEecc-C-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~~-p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
.|+.++|.|.+.|. | ...|+|+++|..+..... .. ...+.+. ..+.|.+.... ..|.|.|+|.|.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~-~~s~l~v~~~~-~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYS-VSSQLTVSPSD-WNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEE-EEEEEEECHHH-hCCCCCEEEEEEeCCC
Confidence 68999999999986 6 478999999998874321 11 1111222 23467777666 6799999999987654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.5e-06 Score=60.07 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=50.5
Q ss_pred CceEEEEEEeccC---CCeEEEEECC---EE--Cc--C---C-CCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEE
Q psy14886 5 ADLTWTCEAFGVP---DVTYSWFRNG---EL--LN--S---E-TLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 5 ~~~~l~C~~~~~p---~~~~~W~~~~---~~--l~--~---~-~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y 64 (505)
.+++|.|.....+ ...|.|+|.. .+ +. . . ......++|.... +.+|.|.+++ .+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~-~sD~GtY 79 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAV-QADEGKY 79 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCc-cccceEE
Confidence 3789999996533 4589999932 11 11 0 0 0001112344332 4689999999 9999999
Q ss_pred EEEEEc-ccCceEeeEEEEE
Q psy14886 65 QCRAKN-QLKTRYSSAQLRV 83 (505)
Q Consensus 65 ~C~~~~-~~~~~~~~~~l~v 83 (505)
.|.+.+ ..|..+..+.|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999986 6666666666665
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=62.34 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCceEEEEEEeccC-------CCeEEEEECC-----EECc----CCC---CCCCCCCcEEEE-------CCeEEEEcCCC
Q psy14886 4 QADLTWTCEAFGVP-------DVTYSWFRNG-----ELLN----SET---LPLEDQDRYFIQ-------DNVLTIRYLNP 57 (505)
Q Consensus 4 G~~~~l~C~~~~~p-------~~~~~W~~~~-----~~l~----~~~---~~~~~~~~~~~~-------~~~L~i~~~~~ 57 (505)
|++++|.|.+.-.| .+.|.|.|.. ..+. ... ......+|..+. +.+|.|.+++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~- 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR- 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC-
Confidence 89999999975322 4789999841 1110 000 111234566652 3589999999
Q ss_pred CCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+|+|.|+|.+..........+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999998665566677777764
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-07 Score=64.90 Aligned_cols=60 Identities=38% Similarity=0.720 Sum_probs=41.9
Q ss_pred CCeEEEEeecCCCC-CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 104 GGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 104 g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+..++|.|.+.+.+ .+.+.|+.................+.|.|.++..+|.|.|+|.|.|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33399999999887 7799999111111111122223355799999999999999999986
|
... |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.9e-06 Score=61.33 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|++|+|.|.... +...+.|+|+|........ ...........+.|..++ .+|+|.|+|...
T Consensus 12 V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~---~~~~~~~~~a~f~I~~~~-~~~~G~Y~C~~~ 75 (94)
T cd05711 12 VPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL---YEKHHGGFQASFPLGPVT-PAHAGTYRCYGS 75 (94)
T ss_pred cCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec---ccccCCeEEEEEEecCCC-cccCEEEEEEEE
Confidence 578999999998854 5578999998875331100 000001123478999999 999999999975
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-06 Score=62.76 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEEC----CEE--Cc-C-CCCCC----CCCCcEEE------ECCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRN----GEL--LN-S-ETLPL----EDQDRYFI------QDNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~----~~~--l~-~-~~~~~----~~~~~~~~------~~~~L~i~~~~~~ 58 (505)
+.+|++++|.|.....+ ...|.|++. +.+ +- . ..... ...+|+.. .+.+|.|.+++ .
T Consensus 10 ~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~-~ 88 (115)
T cd05880 10 AVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ-P 88 (115)
T ss_pred EEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC-h
Confidence 35899999999986432 246999862 111 10 0 00000 11234332 24579999999 9
Q ss_pred CCCeEEEEEEEcccC
Q psy14886 59 RDPAMYQCRAKNQLK 73 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~ 73 (505)
+|+|.|+|.+.|...
T Consensus 89 ~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 89 TDNGTYTCQVKNPPD 103 (115)
T ss_pred hhCEEEEEEEEeCCC
Confidence 999999999997554
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >smart00060 FN3 Fibronectin type 3 domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-06 Score=59.24 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=53.2
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+|.++.+......++.|+|++++. .+. .+|.+.|...... .|....... ....+.+.+|.|++.|.|+|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~--~~~--~~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~~~~~Y~v~v 74 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPD--DGI--TGYIVGYRVEYREEGSSWKEVNVTP----SSTSYTLTGLKPGTEYEFRV 74 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCC--CCC--CccEEEEEEEEecCCCccEEEEecC----CccEEEEeCcCCCCEEEEEE
Confidence 344566665566699999997322 222 7888888765522 244333322 14678899999999999999
Q ss_pred EEecCCCCC
Q psy14886 466 QAINDVGPG 474 (505)
Q Consensus 466 ~a~n~~G~g 474 (505)
.|.+..|.+
T Consensus 75 ~a~~~~g~~ 83 (83)
T smart00060 75 RAVNGAGEG 83 (83)
T ss_pred EEEcccCCC
Confidence 999987753
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=58.13 Aligned_cols=68 Identities=24% Similarity=0.434 Sum_probs=44.1
Q ss_pred ceEEEEEEec-cCCCeEEEEECCEECcCCCCCC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 6 DLTWTCEAFG-VPDVTYSWFRNGELLNSETLPL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 6 ~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+.|.|.+.+ +|.+.|+|+++++++....... ...+......+.|.+.... .++.+.|+|.|.+....
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~-~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDR-EDDGAPIICRVDHPALK 70 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcch-hhCCCEEEEEEeChhcC
Confidence 3689999976 5889999999999886321000 0011122223456666655 56667999999986543
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.5e-06 Score=61.25 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=47.1
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECCE--ECc---C--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNGE--LLN---S--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~~--~l~---~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|++|++++|.|.+.+. ....+.|+|... ... . .........|+... ..+|.|.+++ .+|+|.|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~-~~Dsg~Y~C~ 81 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQ-TEDEADYYCQ 81 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCC-hhhCEEEEEE
Confidence 6899999999999764 456799999422 111 0 00011123466552 2469999999 9999999999
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.9e-06 Score=62.09 Aligned_cols=75 Identities=29% Similarity=0.512 Sum_probs=52.0
Q ss_pred CCCeEEEEeecCCCC------CCeEEEEECC-----E-Eec--CCC----------cEEEe----eCCCEEEcCCCCCCC
Q psy14886 103 EGGNVTIFCNPEAAP------KPKFVWKKDG-----N-IIG--SGG----------RRKIF----ENGNLLISPVSRDDS 154 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p------~~~i~W~~~g-----~-~~~--~~~----------~~~~~----~~~~l~i~~v~~~d~ 154 (505)
.|++|+|.|.....+ ...|.|++.. . .+. .+. +.... .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999976542 4599999862 1 110 111 11110 123699999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEE
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999887776777777774
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.7e-06 Score=60.00 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEec-cCCCe--EEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 1 MDNQADLTWTCEAFG-VPDVT--YSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~--~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.+|+.++|.|.+.| .|... |.|||+++.+......... ..-.....+|.+..-+ .+|...|+|.|.+..
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~-~~~~~~~stlt~~~~r-~D~g~~~sC~A~l~l 85 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNT-KSPVNAPATITITVDR-EDHGANFSCETELDL 85 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecccc-CCCceeEEEEEEecch-hhCCcEEEEEEEecc
Confidence 468999999999976 67665 7999999999743221100 1112233567776544 444448999998644
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-06 Score=64.31 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=48.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE--ECc------CCCC--C-CCCCCcEEEE-----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE--LLN------SETL--P-LEDQDRYFIQ-----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~--~l~------~~~~--~-~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y 64 (505)
+++|++++|.|.+.+ +...+.|||... .+. .... . .....|+... ..+|.|.+++ .+|+|.|
T Consensus 10 v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~-~~Dsg~Y 87 (110)
T cd05899 10 KGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE-PEDSAVY 87 (110)
T ss_pred EcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC-hhhCEEE
Confidence 578999999999987 678899999532 111 0000 0 1123456542 3579999999 9999999
Q ss_pred EEEEEcc
Q psy14886 65 QCRAKNQ 71 (505)
Q Consensus 65 ~C~~~~~ 71 (505)
.|.+.+.
T Consensus 88 ~Ca~~~~ 94 (110)
T cd05899 88 LCASSLG 94 (110)
T ss_pred EEEeeCC
Confidence 9998754
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=64.73 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=49.9
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEE-----CcCC-C----CCCCCCCcEEEE------CCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGEL-----LNSE-T----LPLEDQDRYFIQ------DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~-----l~~~-~----~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~ 63 (505)
|.+|++++|.|.+.+. +...+.|+|.... +... . ......+|+.+. ..+|.|.+++ .+|+|.
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~-~~D~G~ 81 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQ-PEDSAV 81 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCC-HHHCEE
Confidence 5789999999999875 6788999994321 1000 0 011234455542 2489999999 999999
Q ss_pred EEEEEEcccC
Q psy14886 64 YQCRAKNQLK 73 (505)
Q Consensus 64 Y~C~~~~~~~ 73 (505)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999986553
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=62.61 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=46.9
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEECC--EE---CcCC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRNG--EL---LNSE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~~--~~---l~~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+++|++++|.|.+.+.. ...+.|+|.. +. |... ........|+... ...|.|.+++ .+|+|.|.|.+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~-~~Dsg~Y~Ca~ 90 (106)
T cd04980 12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVE-PEDAAVYYCQQ 90 (106)
T ss_pred ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCC-hHHCEEEEEEE
Confidence 57899999999997654 5779999842 11 1100 0011123456552 2369999999 99999999998
Q ss_pred Ec
Q psy14886 69 KN 70 (505)
Q Consensus 69 ~~ 70 (505)
.+
T Consensus 91 ~~ 92 (106)
T cd04980 91 YG 92 (106)
T ss_pred eC
Confidence 64
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.3e-06 Score=60.92 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=49.7
Q ss_pred ceEEeeCCCeEEEEeecCCC----CCCeEEEEE---------------CCEEec-C----CCcEEEe-----eCCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAA----PKPKFVWKK---------------DGNIIG-S----GGRRKIF-----ENGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~----p~~~i~W~~---------------~g~~~~-~----~~~~~~~-----~~~~l~i~ 147 (505)
..+.+..|++++|.|..... +..+|.|.+ +|.... . .+|..+. .+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 55678899999999997553 235899933 333221 1 1233322 23469999
Q ss_pred CCCCCCCEEEEEEEEcCCCce
Q psy14886 148 PVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+++.+|.|.|+|.+.|.-+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999876543
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.28 E-value=1e-05 Score=56.85 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=44.2
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
++|.|.+.| +|.+.|+|+++|+++....... ...+......+.|.+.... .+|...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~-~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTR-EDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecc-hhCCCEEEEEEECccc
Confidence 689999987 6889999999999886432100 1111122223456666666 6677899999998653
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.9e-06 Score=56.03 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=42.9
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEE-Ee-----eCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRK-IF-----ENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~-~~-----~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+.|.|.+.|. |.+.|.|+++++.+....... .. ...+|.|..-..+|+..|+|.|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 6899998776 788999999999886532211 11 12247787777778889999999865
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.3e-06 Score=62.02 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=50.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCE---Ee-----------cCCCcEEEeeC-----CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN---II-----------GSGGRRKIFEN-----GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~---~~-----------~~~~~~~~~~~-----~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|.+.+.+...+.|++... +. ....++.+... ..|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 45678999999999999877777999998421 10 11234433322 2599999999999999
Q ss_pred EEEEEcCC
Q psy14886 158 SCTATNVH 165 (505)
Q Consensus 158 ~C~~~~~~ 165 (505)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99998654
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-05 Score=62.98 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=68.6
Q ss_pred eEEeeCCCeEEEEeecCCC---CCCeEEEEECCE----Ee-c------------CCCcEEEee-CC--CEEEcCCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGN----II-G------------SGGRRKIFE-NG--NLLISPVSRDDS 154 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~---p~~~i~W~~~g~----~~-~------------~~~~~~~~~-~~--~l~i~~v~~~d~ 154 (505)
.+....|+.+.|.|.-... +...|.|+|.+. .+ . ...+..+.. .+ +|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3557789999999986522 345899999431 11 0 011222211 12 589999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~ 219 (505)
|.|+|.+..........-.|.+..+-..... ........-...++.|.+.+.|.| .+.|.-+
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~-a~~~dFp~~~~~~i~C~sggfP~P--~~~Wle~ 161 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVH-SERSQFPDFSVLTVTCTVNAFPHP--HVQWLMP 161 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEE-eccccCCCCCeeEEEEecCCcCCc--hheeccc
Confidence 9999999876544444333443222111111 111111124456799996666655 5558754
|
|
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=55.11 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=51.7
Q ss_pred EeeCCCeEEEEeecCCCCC--CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~--~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+..|++++|+|.....+. +.|.|...+..... .......+|.+..+...|+|.++|.+....-.....+.+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce---eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 5788999999999866544 49999975543221 11123457999999999999999999765444444444444
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.5e-06 Score=57.09 Aligned_cols=67 Identities=19% Similarity=0.411 Sum_probs=44.8
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCC--CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETL--PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
++|.|.+.| +|...|+|+|||+.+..... .....+......++|.+..-. .++...|+|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~-~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDR-SDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEccc-ccCCCEEEEEEechhcC
Confidence 689999987 78899999999999863211 001112222233577777665 56667899999876533
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=60.06 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCCeEEEEeecCCCC------------CCeEEEEEC--CE---Eec-C----------CCcEEEee------CCCEEEcC
Q psy14886 103 EGGNVTIFCNPEAAP------------KPKFVWKKD--GN---IIG-S----------GGRRKIFE------NGNLLISP 148 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p------------~~~i~W~~~--g~---~~~-~----------~~~~~~~~------~~~l~i~~ 148 (505)
.|++++|.|...... .+.|.|+|. |+ .+. . .+|..+.. +.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999875432 359999983 21 110 0 12443322 34699999
Q ss_pred CCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 149 VSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666666666663
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.8e-06 Score=60.03 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=48.5
Q ss_pred CCeEEEEeecCCCC---CCeEEEEECC--EEe---------cC------CCcEEEee------CCCEEEcCCCCCCCEEE
Q psy14886 104 GGNVTIFCNPEAAP---KPKFVWKKDG--NII---------GS------GGRRKIFE------NGNLLISPVSRDDSGIY 157 (505)
Q Consensus 104 g~~v~l~C~~~~~p---~~~i~W~~~g--~~~---------~~------~~~~~~~~------~~~l~i~~v~~~d~G~y 157 (505)
|++++|.|...... ...+.|++.. ..+ .. .+|..+.. +.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 68899999875332 2378888743 111 00 12333221 13599999999999999
Q ss_pred EEEEEcCCCceeeeEEEEE
Q psy14886 158 SCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 158 ~C~~~~~~g~~~~~~~l~v 176 (505)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666665
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.9e-06 Score=61.74 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=46.0
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEECCE------ECc---CCCC----CCCCCCcEEEE------CCeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRNGE------LLN---SETL----PLEDQDRYFIQ------DNVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~~~------~l~---~~~~----~~~~~~~~~~~------~~~L~i~~~~~ 57 (505)
+.+|++++|.|.+.... ...+.|++... .+- .... .-...+|+... +.+|.|.+++
T Consensus 10 v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~- 88 (116)
T cd05715 10 AVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ- 88 (116)
T ss_pred EEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC-
Confidence 35899999999996432 25699987321 110 0000 00112333332 3579999999
Q ss_pred CCCCeEEEEEEEcccC
Q psy14886 58 ERDPAMYQCRAKNQLK 73 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~ 73 (505)
.+|+|.|.|.+.+...
T Consensus 89 ~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 89 FTDNGTYTCDVKNPPD 104 (116)
T ss_pred cccCEEEEEEEEeCCC
Confidence 9999999999986543
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.7e-07 Score=61.52 Aligned_cols=58 Identities=28% Similarity=0.465 Sum_probs=41.4
Q ss_pred ceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 6 ~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.++|.|.+.+.+ .+.+.|+ +....... .........++|.|.++. .+|.|.|+|.|.|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~~~-----~~~~~~~~~~~L~i~~v~-~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPSFNS-----NSRGSSSSNSTLTISNVT-RSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEEEEE-----EEEEEEEEEEEEEESSCC-GGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCceee-----eeeeccceeeEEEEccCC-HHhCcEEEEEEEC
Confidence 399999998866 8999999 11111100 111223356789999999 9999999999975
|
... |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.7e-06 Score=59.63 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=51.1
Q ss_pred eCCCeEEEEeecCC-CCCCeEEEEECCEEec--C-----------C----CcEEEee-CCCEEEcCCCCCCCEEEEEEEE
Q psy14886 102 GEGGNVTIFCNPEA-APKPKFVWKKDGNIIG--S-----------G----GRRKIFE-NGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 102 ~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~--~-----------~----~~~~~~~-~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
..|++|+|.|.... .....+.|++....+. . . .+..+.. +.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998765 4445899998643221 0 0 1222322 2579999999999999999999
Q ss_pred cCCCce-eeeEEEEE
Q psy14886 163 NVHGMD-ESKGRLIV 176 (505)
Q Consensus 163 ~~~g~~-~~~~~l~v 176 (505)
...|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 876554 33355555
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=60.30 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=52.7
Q ss_pred CCCeEEEEeecCCCC------CCeEEEEECCE------E--ecC----------CCcEEEee----CCCEEEcCCCCCCC
Q psy14886 103 EGGNVTIFCNPEAAP------KPKFVWKKDGN------I--IGS----------GGRRKIFE----NGNLLISPVSRDDS 154 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p------~~~i~W~~~g~------~--~~~----------~~~~~~~~----~~~l~i~~v~~~d~ 154 (505)
.|++++|.|.....| ...|.|++... . +.. ..+..+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999875542 34799998431 1 110 12333321 23699999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEE
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988877777777774
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.024 Score=63.87 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=138.1
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEE--EEcccCceEeeE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR--AKNQLKTRYSSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~--~~~~~~~~~~~~ 79 (505)
..|+.++|.-...+-....+.|..++..-.. . .+.++.- + ....|.|.-. |.|..+....+.
T Consensus 1710 avn~~V~fs~~lt~GS~vty~W~~gdG~s~~------~------s~p~~tH---t-f~~~G~y~VtVta~N~vss~~~s~ 1773 (2740)
T TIGR00864 1710 AVNALINLSAELAEGSGLQYRWFLEEGDDLE------T------SEPFMSH---S-FPSAGLHLVTMKAFNELGSANASE 1773 (2740)
T ss_pred cCCCeEEEEEEecCCCCcEEEEEECCCCCcc------c------CCCceEE---E-ccCCceEEEEEEEEccccccceeE
Confidence 4578888887666667889999987632110 0 0111110 2 4567888776 457777777777
Q ss_pred EEEEEecCCCccCCCCCc-e-EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 80 QLRVLTLKPSFKKRPLES-E-TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~-~-~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
.+.|.+.-..+.+..... . ..+..|..+.+.-.+.........|..++..-..+ ... ..+..+.|.|
T Consensus 1774 ~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g--------k~v---~~Tf~~aG~y 1842 (2740)
T TIGR00864 1774 EVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG--------KHA---CMTFPDAGTF 1842 (2740)
T ss_pred EEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc--------cee---EEecCCCeEE
Confidence 777775322222221111 1 13556778888777544444577887765321111 111 1335678988
Q ss_pred EEE--EEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCe
Q psy14886 158 SCT--ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235 (505)
Q Consensus 158 ~C~--~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 235 (505)
+.. |.|..+....+..+.|+++............+..|+.++|.+....+. .+.+.|...+.....
T Consensus 1843 tV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS--~Vtf~w~fGdgs~~~---------- 1910 (2740)
T TIGR00864 1843 AIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGS--AVNFRLQIGGAAPEV---------- 1910 (2740)
T ss_pred EEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCC--ceEEEEEeCCCCcee----------
Confidence 765 568888777777888877765554445556678899999999887665 678889775322110
Q ss_pred eeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 236 ~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
...+. ........-..+.....|.|..+.......+.|..
T Consensus 1911 -~t~~~-t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864 1911 -LQPGP-RFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred -ecCCC-eEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEE
Confidence 00011 11122223344555667788888877777777644
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-05 Score=59.31 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=52.2
Q ss_pred CCCeEEEEeecCCCC----------CCeEEEEEC--CEEec----C----------CCcEEEe------eCCCEEEcCCC
Q psy14886 103 EGGNVTIFCNPEAAP----------KPKFVWKKD--GNIIG----S----------GGRRKIF------ENGNLLISPVS 150 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p----------~~~i~W~~~--g~~~~----~----------~~~~~~~------~~~~l~i~~v~ 150 (505)
.|++++|.|.....+ ...|.|++. ++... . .+|..+. .+.+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999975543 257999984 22110 0 1233331 12359999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999877777777777774
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=58.17 Aligned_cols=72 Identities=25% Similarity=0.387 Sum_probs=48.9
Q ss_pred CeEEEEeecCCCC---CCeEEEEECCE----Ee-----------cC--CCcEEEe----eCCCEEEcCCCCCCCEEEEEE
Q psy14886 105 GNVTIFCNPEAAP---KPKFVWKKDGN----II-----------GS--GGRRKIF----ENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 105 ~~v~l~C~~~~~p---~~~i~W~~~g~----~~-----------~~--~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 160 (505)
++|+|.|.....+ ...|.|+|... .+ .. ..+..+. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999976653 34799999432 11 01 1222222 234699999999999999999
Q ss_pred EEc-CCCceeeeEEEEE
Q psy14886 161 ATN-VHGMDESKGRLIV 176 (505)
Q Consensus 161 ~~~-~~g~~~~~~~l~v 176 (505)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5677777777766
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=59.65 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=48.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EEec----------------CCCcEEEee----CCCEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIG----------------SGGRRKIFE----NGNLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~~~----------------~~~~~~~~~----~~~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|.+.+ +...+.|++.. +... ...++.... ...|.|.+++.+|+
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 4567899999999999887 66789999842 1110 012333322 12599999999999
Q ss_pred EEEEEEEEcC
Q psy14886 155 GIYSCTATNV 164 (505)
Q Consensus 155 G~y~C~~~~~ 164 (505)
|.|.|.+.+.
T Consensus 85 g~Y~Ca~~~~ 94 (110)
T cd05899 85 AVYLCASSLG 94 (110)
T ss_pred EEEEEEeeCC
Confidence 9999999764
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.2e-06 Score=60.65 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=47.8
Q ss_pred EeeCCCeEEEEeecCCC-CCCeEEEEECCE---E--e------------cCCCcEEEeeC-----CCEEEcCCCCCCCEE
Q psy14886 100 YAGEGGNVTIFCNPEAA-PKPKFVWKKDGN---I--I------------GSGGRRKIFEN-----GNLLISPVSRDDSGI 156 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~---~--~------------~~~~~~~~~~~-----~~l~i~~v~~~d~G~ 156 (505)
.+.+|++++|.|.+.+. +...+.|++... + + ....+...... .+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999998876 566899998422 1 1 01123333222 259999999999999
Q ss_pred EEEEEEcCCC
Q psy14886 157 YSCTATNVHG 166 (505)
Q Consensus 157 y~C~~~~~~g 166 (505)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=54.11 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=50.8
Q ss_pred CCCCceEEEEEEecc--CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 2 DNQADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
-.|++++|+|..... |.+.|+|...+..... .......+|.+..++ ..|+|..+|.+..........+
T Consensus 12 L~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---------~~~~~~ktL~~~qv~-~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 12 LSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---------ILNQDKKTLNLVQLG-PNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred ecCCcEEEEEecCCCCCCCccEEEeCCCCccce---------eccCCccEEEeceeC-cccCCEEEEEEEECceEEEEEe
Confidence 479999999999543 3459999986543221 011245789999999 9999999999975443344455
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.+.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 55554
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=58.06 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=47.2
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEECC--EE---ec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYS 158 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g--~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~ 158 (505)
..+.+.+|++++|.|.+.+.. ...+.|++.. +. +. ...++...... .|.|.+++.+|+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence 446789999999999987654 5689999732 11 11 01233332222 4999999999999999
Q ss_pred EEEEcC
Q psy14886 159 CTATNV 164 (505)
Q Consensus 159 C~~~~~ 164 (505)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 998653
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=61.56 Aligned_cols=69 Identities=23% Similarity=0.485 Sum_probs=47.7
Q ss_pred CCCCCceEEEEEEec--cCCCeEEEEEC--CEEC------cCCCC----CCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFG--VPDVTYSWFRN--GELL------NSETL----PLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~--~p~~~~~W~~~--~~~l------~~~~~----~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+++|++++|.|.+.+ .+...+.|+|. +... ..... .....+|+.+. ..+|.|.+++ .+|
T Consensus 10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~-~~D 88 (116)
T cd04982 10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE-KED 88 (116)
T ss_pred eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC-HHH
Confidence 468999999999977 56788999994 2211 00000 00123566542 2479999999 999
Q ss_pred CeEEEEEEEc
Q psy14886 61 PAMYQCRAKN 70 (505)
Q Consensus 61 ~G~Y~C~~~~ 70 (505)
+|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999999863
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-05 Score=53.84 Aligned_cols=86 Identities=31% Similarity=0.483 Sum_probs=61.7
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.+|.++.+......++.++|.++......+..|.+.+.......|....... .....+.+.+ |.|++.|.|
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~--------~~~~~~~i~~-l~p~~~Y~~ 72 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTP--------GSETSYTLTG-LKPGTEYEF 72 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccC--------CcccEEEEcc-ccCCCEEEE
Confidence 4556677777778999999998765445677899999877655666553321 0223444554 999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy14886 360 KVIAGNELGYGEPSS 374 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~ 374 (505)
++.|.+..|.+.++.
T Consensus 73 ~v~a~~~~~~~~~s~ 87 (93)
T cd00063 73 RVRAVNGGGESPPSE 87 (93)
T ss_pred EEEEECCCccCCCcc
Confidence 999999988776554
|
Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-05 Score=73.80 Aligned_cols=141 Identities=15% Similarity=0.254 Sum_probs=93.8
Q ss_pred eEEEEEeCCeEEEEeecCCCCC-CCCceEEEEEEeCC--------------CCCeEEeeeccccceeeeecCceeeEEee
Q psy14886 285 VQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNW--------------NSTWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 285 ~~~~~~~~~~v~l~w~~~~~~~-~~i~~y~v~~~~~~--------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
+.......+++.++|..-...+ ....+|.+.|+..+ ...|........ ..... ..........
T Consensus 494 ~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~-~~~p~-~~~~~~~~l~ 571 (1025)
T KOG4258|consen 494 FSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP-DLIPN-DGTHPGFLLD 571 (1025)
T ss_pred eeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCC-cCCCc-cccccceehh
Confidence 4455667789999998543222 33678998887653 345665543332 11111 1223234444
Q ss_pred eccCCceeEEEEEEEcC--CCcCC-CCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEE
Q psy14886 350 VLVPWSTYEFKVIAGNE--LGYGE-PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 426 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~--~G~~~-~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~ 426 (505)
+|.|.+.|.+-|++... .+... .-+....++|.+..|. ||..+-....+++.|.|.|+| |...||.+++|.|.|
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~p--P~~pNG~lt~Ylv~w 648 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKP--PSQPNGNLTHYLVVW 648 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecC--CCCCCCceeEEEEEE
Confidence 59999999999997632 22221 1112236788888775 787777777888899999998 788999999999999
Q ss_pred EEcC
Q psy14886 427 RKKN 430 (505)
Q Consensus 427 ~~~~ 430 (505)
+..+
T Consensus 649 er~~ 652 (1025)
T KOG4258|consen 649 ERQA 652 (1025)
T ss_pred Eecc
Confidence 9865
|
|
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=60.59 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|..... ....+.|+|. +..+. ........++|+.+. ..+|.|.+++ .+|+|.|.|
T Consensus 11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~-~~Dsg~Y~C 89 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQ-LEDSAKYFC 89 (116)
T ss_pred EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCC-HHHCEEEEE
Confidence 4789999999998753 4577999993 21110 011111234677653 2479999999 999999999
Q ss_pred EEEc
Q psy14886 67 RAKN 70 (505)
Q Consensus 67 ~~~~ 70 (505)
.+..
T Consensus 90 ~~~~ 93 (116)
T cd07706 90 ALST 93 (116)
T ss_pred EEEC
Confidence 9874
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.5e-05 Score=54.38 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=48.1
Q ss_pred CceEEEEEEecc-CCCeEEEEECCE----ECc------CCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 5 ADLTWTCEAFGV-PDVTYSWFRNGE----LLN------SETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 5 ~~~~l~C~~~~~-p~~~~~W~~~~~----~l~------~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.++|.|..... ...+++|.|-.. .+. .........+|+... +.+|.|.+++ .+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt-~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNAT-EEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCC-cccCEEEEEEE
Confidence 468999999642 357899999421 111 001111233555543 4799999999 99999999998
Q ss_pred Ec-ccCceEeeEE
Q psy14886 69 KN-QLKTRYSSAQ 80 (505)
Q Consensus 69 ~~-~~~~~~~~~~ 80 (505)
.. +.|.....+.
T Consensus 80 ~t~P~g~~~~~i~ 92 (96)
T cd05889 80 VTYPQGSWEKVIE 92 (96)
T ss_pred EeCCCCCeEEEEE
Confidence 63 4555544443
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.2e-06 Score=61.77 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCE-----ECc---CC----CCCCCCCCcEEE--EC----CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGE-----LLN---SE----TLPLEDQDRYFI--QD----NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~-----~l~---~~----~~~~~~~~~~~~--~~----~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|... ......+.|++... .+. .. .......+++.. .. .+|.|.+++ .+|+
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~-~~Ds 91 (114)
T PF07686_consen 13 VQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ-PSDS 91 (114)
T ss_dssp EETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES-GGGE
T ss_pred EecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC-cCcC
Confidence 36899999999998 44567999999322 111 00 001112233332 22 379999999 9999
Q ss_pred eEEEEEEEcc
Q psy14886 62 AMYQCRAKNQ 71 (505)
Q Consensus 62 G~Y~C~~~~~ 71 (505)
|.|.|.+...
T Consensus 92 G~Y~C~v~~~ 101 (114)
T PF07686_consen 92 GTYFCQVSTS 101 (114)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEEC
Confidence 9999999865
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.8e-06 Score=71.90 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=70.7
Q ss_pred eccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCC
Q psy14886 396 GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 475 (505)
Q Consensus 396 ~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~ 475 (505)
......+++|.|+. |.....+..+|.|+.-.-+++.+..+.+. ..++.++.+|..++.|.-||.|+|..|.|+
T Consensus 448 c~t~nns~t~~wkq--p~~~~~~~dg~~leld~g~~g~frevy~g-----~etmctvdglhfns~y~arvka~n~tg~s~ 520 (699)
T KOG4367|consen 448 CCTHNNSATLSWKQ--PPLSTVPADGYILELDDGNGGQFREVYVG-----KETMCTVDGLHFNSTYNARVKAFNKTGVSP 520 (699)
T ss_pred hhccCCceEEEeec--CCCCCCCCcceEEEeecCCCCceeEEEec-----CceeEEecceecchhHHHHHHHhhccCCCc
Confidence 35567899999997 34566788999999988777877766543 357899999999999999999999999999
Q ss_pred CCceEEEeecce
Q psy14886 476 ESEVVTIWHDPL 487 (505)
Q Consensus 476 ~s~~~~~~t~p~ 487 (505)
+|+.+..+|.-.
T Consensus 521 ys~tl~lqts~v 532 (699)
T KOG4367|consen 521 YSKTLVLQTSEV 532 (699)
T ss_pred ccceeEeeecce
Confidence 999998877533
|
|
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.1e-05 Score=54.32 Aligned_cols=71 Identities=25% Similarity=0.454 Sum_probs=48.1
Q ss_pred eEEEEeecCCC-CC---CeEEEEECC--E--Ee--cC-----------CCcEEEe----eCCCEEEcCCCCCCCEEEEEE
Q psy14886 106 NVTIFCNPEAA-PK---PKFVWKKDG--N--II--GS-----------GGRRKIF----ENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 106 ~v~l~C~~~~~-p~---~~i~W~~~g--~--~~--~~-----------~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 160 (505)
+++|.|..... |. .+|.|.+.. . .+ .. .+|.... .+.+|.|.+++.+|.|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57899987632 21 279998731 1 11 00 1222222 135799999999999999999
Q ss_pred EEc-CCCceeeeEEEEE
Q psy14886 161 ATN-VHGMDESKGRLIV 176 (505)
Q Consensus 161 ~~~-~~g~~~~~~~l~v 176 (505)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6787777788876
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.1e-05 Score=77.31 Aligned_cols=405 Identities=13% Similarity=0.066 Sum_probs=213.8
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe---------------cCCCcc-CCCCCceEEeeCCCeEEEEee
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT---------------LKPSFK-KRPLESETYAGEGGNVTIFCN 112 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---------------~~p~~~-~~~~~~~~~v~~g~~v~l~C~ 112 (505)
+..+.+.. ..+.+.|+|...+..+.....+...+.. .++... .......+....+..+++.|.
T Consensus 279 t~~i~~~~-~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 279 TKTIQNDG-PEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred cccccccC-CccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 56667777 7788888888877666554443333221 111111 111123345667788999999
Q ss_pred cCCCCCC-eEEEEECCEEecCCCcEEEe-----eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeee-
Q psy14886 113 PEAAPKP-KFVWKKDGNIIGSGGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ- 185 (505)
Q Consensus 113 ~~~~p~~-~i~W~~~g~~~~~~~~~~~~-----~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~- 185 (505)
..+.+.+ .+.|++++.....+..-... ....+.+..+...+.+.|.|.|.|..|........++...+.....
T Consensus 358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~ 437 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPP 437 (1205)
T ss_pred ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCc
Confidence 9988777 49999977665432211111 1234777888889999999999999887766655555442221110
Q ss_pred ---CCCceEEEe--eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEE
Q psy14886 186 ---LPPKITIAA--HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV 260 (505)
Q Consensus 186 ---~~~~~~~~~--g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 260 (505)
......... -+.+.+.|.....+.+....+|++++........ ........+|.+......+.+.|.-..
T Consensus 438 ~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~-----~l~r~~~tslLlk~~~~~~~A~~~~a~ 512 (1205)
T KOG0613|consen 438 KFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSV-----TLTRDVLTSLLLKVASLSDGAQYTRAL 512 (1205)
T ss_pred cccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccc-----cccccchhhheeeccCCCccchhhhhh
Confidence 011122222 3678889988888877444566665544432110 111111234555556667777776554
Q ss_pred EecCCcEEEEEEEE-EcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCC-ceEEEEEEeCCCCCeEEeeeccccceeee
Q psy14886 261 KSTVGKISTKTTVI-VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI-THYKIIARTNWNSTWFNVSEHVIGKEVDR 338 (505)
Q Consensus 261 ~n~~g~~~~~~~l~-v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i-~~y~v~~~~~~~~~w~~~~~~~~~~~~~~ 338 (505)
....|....+.... +...+.++..+...........|.|.+-....+.+ .+|....+ ..+.|.....
T Consensus 513 ~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~--------- 581 (1205)
T KOG0613|consen 513 RTLQGKPVPSLDRKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPES--------- 581 (1205)
T ss_pred hccCCCCCCcccccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCccccc---------
Confidence 44333322111111 11111112111111223344555555432211111 12222211 1122222111
Q ss_pred ecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCC-CCCCCCCceeeeeccccccEEEEEEeCCccccCC
Q psy14886 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA-DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 417 (505)
Q Consensus 339 ~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~-~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~ 417 (505)
..+ .+..+.+ ..++..|.+++.+.+..|.+.++.........+ ..+...|..-.............|.. .....-.
T Consensus 582 r~g-tt~t~~~-~~p~~~~~~t~~~k~~~gE~~ps~~~~t~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~-~l~k~~~ 658 (1205)
T KOG0613|consen 582 RPG-TTETIGS-ILPGHEYHVTIKAKNELGESRPSSKSTTLKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLV-GLSKMDL 658 (1205)
T ss_pred CCC-ccccccc-ccccccceeehhhhhcccccCCCCCCccccccccccccccccCCccccccccccchhccc-chhhccc
Confidence 112 4555666 899999999999999999998885321222111 11111111111223445677788877 3445555
Q ss_pred CCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 418 PNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 418 ~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
+...|.......+ ...|....-.. ..-...+..+.+.+.|..-..+.+..+..+..
T Consensus 659 ~a~~~~~~~~~vd~~~K~kv~~~~~----e~d~~i~~~~~t~si~~p~k~~e~~~~~~~~~ 715 (1205)
T KOG0613|consen 659 PANLESQVKPTVVSSPKKKVKKKKQ----EKDLEILAKKGTTSIVEPEKPPESEAATPAEV 715 (1205)
T ss_pred cccceeeeeccccCCcccccccccc----ccchhhhccCCCCcccccccCCccccCCcccc
Confidence 6666766665544 44444322222 12234566777888899999999988886553
|
|
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=57.65 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=47.6
Q ss_pred CceEEeeCCCeEEEEeecCCCC----CCeEEEEEC----CEE--ec---------CC----CcEEEe-----eCCCEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAP----KPKFVWKKD----GNI--IG---------SG----GRRKIF-----ENGNLLIS 147 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~----g~~--~~---------~~----~~~~~~-----~~~~l~i~ 147 (505)
+..+.+.+|++++|.|.....+ ...|.|++. +.. +. .. .+..+. .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3567789999999999865332 236999751 211 10 01 122111 12359999
Q ss_pred CCCCCCCEEEEEEEEcCCCc
Q psy14886 148 PVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~ 167 (505)
+++.+|+|.|.|.+.+..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999976553
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=55.42 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=44.3
Q ss_pred EeeCCCeEEEEeecCCC--CCCeEEEEECC--EEe---c---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAA--PKPKFVWKKDG--NII---G---------SGGRRKIFENG---NLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~~~---~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+|++++|.|...+. ....+.|++.. ... . ...++....++ .|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998664 44579998832 111 0 01233332222 499999999999999999
Q ss_pred EEc
Q psy14886 161 ATN 163 (505)
Q Consensus 161 ~~~ 163 (505)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.7e-05 Score=53.58 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=49.4
Q ss_pred CeEEEEeecCCCC-CCeEEEEECC----EEec--C-----------CCcEEEe----eCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 105 GNVTIFCNPEAAP-KPKFVWKKDG----NIIG--S-----------GGRRKIF----ENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 105 ~~v~l~C~~~~~p-~~~i~W~~~g----~~~~--~-----------~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
++++|.|.....+ ..+|.|.|.. ..+. . .+|..+. .+.+|.|.+++.+|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 3689999976433 3489998832 1221 0 1233331 24579999999999999999975
Q ss_pred -cCCCceeeeEEEEE
Q psy14886 163 -NVHGMDESKGRLIV 176 (505)
Q Consensus 163 -~~~g~~~~~~~l~v 176 (505)
.+.|.......|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 57788888888776
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=57.00 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=47.6
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEE-----Cc-CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGEL-----LN-SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~-----l~-~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.... .....+.|+|.... +. .........+|+.+. ..+|.|.+++ .+|+|.|.|.
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~ 82 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLR-KEDAGWYWCG 82 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCC-HHHCEEEEEE
Confidence 468999999999865 35678999995421 11 001111234566552 2479999999 9999999998
Q ss_pred EEcc
Q psy14886 68 AKNQ 71 (505)
Q Consensus 68 ~~~~ 71 (505)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8753
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=57.97 Aligned_cols=68 Identities=15% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC----EEC---c---CC-CC----CCCCCCcEEEE----CCeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG----ELL---N---SE-TL----PLEDQDRYFIQ----DNVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~----~~l---~---~~-~~----~~~~~~~~~~~----~~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.+.......+.|+|.. ..+ . .. .. ......|+... ..+|.|.+++ .+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~-~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQ-KENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCC-HHHC
Confidence 579999999999865445679999943 211 1 00 00 00123456542 2479999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=55.81 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=45.0
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC---CcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~---~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+.+|++|+|.|.... ....+.|+|+|...... ..........|.|.+++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 45889999999998765 44589999988643210 000001122589999999999999999753
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=58.62 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=57.9
Q ss_pred eEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEec----------C--CCcEEEe----eCCCEEEcCCCCCCCEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIG----------S--GGRRKIF----ENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~----------~--~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 160 (505)
...+.+|++++|.|... +...+.+.|+|..+.+. + .++.... .+.+|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45688999999999974 54567999999643221 1 1233221 234699999999999999999
Q ss_pred EEc-CCC-ceeeeEEEEEEeC
Q psy14886 161 ATN-VHG-MDESKGRLIVLHG 179 (505)
Q Consensus 161 ~~~-~~g-~~~~~~~l~v~~~ 179 (505)
..- +.| ..+....|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 864 456 6666788888653
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.8e-05 Score=70.76 Aligned_cols=127 Identities=27% Similarity=0.303 Sum_probs=84.0
Q ss_pred eccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~ 429 (505)
+|.++..|.|||.|.|..|.++++... .+.|-...-|.+|+.+++. .+..-+.+.|+| |...+.|.|+.|.....-.
T Consensus 653 ~lv~Gq~yrfrV~aIng~G~gp~s~i~-~~kTc~pG~P~apS~~ri~-k~~eGi~l~wep-pt~p~sg~Iieys~ylAi~ 729 (830)
T KOG4152|consen 653 SLVTGQAYRFRVTAINGKGPGPASTIL-KLKTCAPGKPTAPSGARIK-KTIEGISLVWEP-PTKPGSGTIIEYSPYLAII 729 (830)
T ss_pred ccccccceeeeeeeeeccCCCchhhhe-eeeeccCCCCCCccccccc-ccccceeecccC-CCCCCCcceEEeehhhHhh
Confidence 388999999999999999999998876 5666555445678777775 456679999998 4555577787776533221
Q ss_pred C--------CCCcEEEEeee-------cCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 430 N--------DTEFQSETLKE-------YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 430 ~--------~~~~~~~~~~~-------~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
. +-.+....+.. .++.......++. +-.-.|||.|.|+.|.|+..+..-.
T Consensus 730 tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~---~paivfri~aknekGyGpatqvrwl 794 (830)
T KOG4152|consen 730 TQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITT---GPAIVFRIVAKNEKGYGPATQVRWL 794 (830)
T ss_pred hhhhccCccccceeeeecccceeeEEecccceeecccccc---CcceEEEEEecCCCCCCcceEEEec
Confidence 1 11122222111 1111122223333 6778999999999999998766543
|
|
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=56.90 Aligned_cols=65 Identities=28% Similarity=0.466 Sum_probs=46.7
Q ss_pred eCCCeEEEEeecCCC-C-CCeEEEEECCEEecCCCc---EEEeeCCC------EEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 102 GEGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGGR---RKIFENGN------LLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 102 ~~g~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~---~~~~~~~~------l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
..|+.++|.|.+.|. | ...|+|+++|..+..... .....+++ |.+......+.+.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 368899999999998 5 469999999998865432 11222333 55555555699999999987654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.6e-05 Score=55.44 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=45.7
Q ss_pred eeCCCeEEEEeecCCC-CCCe--EEEEECCEEecCCCcEE-----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 101 AGEGGNVTIFCNPEAA-PKPK--FVWKKDGNIIGSGGRRK-----IFENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-p~~~--i~W~~~g~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
+.+|+.++|.|.+.|. |.+. |.|++++..+....... .....+|.+..-..+|...|+|.|.+..+.
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 6799999999998775 6665 79999999886422111 111224666655555555999999876543
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=54.10 Aligned_cols=68 Identities=25% Similarity=0.571 Sum_probs=44.5
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCCC---CCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLPL---EDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.| +| ...++|+|||+.+....... .+.+.|.. .+.|.+..- ..|.| .|+|.+.+..
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~-~S~L~~~~~--~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNV-TSTVQVKLT--EDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEE-EEEEEEECc--cccccCceEEEEEeCC
Confidence 46788999999988 56 58999999999986421111 11112322 345666653 35555 5999998754
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0069 Score=54.24 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=90.2
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCce--EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTR--YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVW 123 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W 123 (505)
.|.|.++. ..|+|.|.-...+..... ...+.+.+...+|.+.+.+.+ +.+|+...-.|.+..+ | ...+.|
T Consensus 208 ~v~I~svD-~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P----VL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 208 GVEIRNVD-YADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP----VLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eEEEEEee-cccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc----cccCCCceEEEEeeeecCCCceEEEE
Confidence 69999999 999997755555433332 223555666667777776643 6799999999998776 4 348999
Q ss_pred EECCEEecCCCcEEE----eeC-------CCEEEcCCCCCCCEEEEEEEEcCCCceeee----EEEEEEeCCeeeeeCCC
Q psy14886 124 KKDGNIIGSGGRRKI----FEN-------GNLLISPVSRDDSGIYSCTATNVHGMDESK----GRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 124 ~~~g~~~~~~~~~~~----~~~-------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~----~~l~v~~~p~~~~~~~~ 188 (505)
+.||.++........ ... ++|.+.+......=..+|.+.=..+..... +.-.|..+|.+
T Consensus 283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~I------ 356 (490)
T PHA03271 283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRI------ 356 (490)
T ss_pred EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeE------
Confidence 999988753221111 111 123333332233337899876322211111 12222223322
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
.+....| ...|.+.--|. .+++.|..+...
T Consensus 357 Sv~FedG---~AVCtA~CVP~-gV~lrWlVgD~p 386 (490)
T PHA03271 357 SLAFKDG---YAICTIECVPS-GITVRWLVHDEP 386 (490)
T ss_pred EEEEeCC---EEEEeccccCC-CcEEEEEecCCC
Confidence 2223333 34576666654 678889765543
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0076 Score=54.98 Aligned_cols=158 Identities=19% Similarity=0.252 Sum_probs=91.5
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe-cCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT-LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVWK 124 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W~ 124 (505)
.|.|..++ ..++|.|+=...+..+.......+.|.. .+|.+.+.+.+ +.+|+...-.|.+..+ | ...+.|+
T Consensus 199 ~LtI~slt-aaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 199 PLTIKSVD-WRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP----SLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ceEEEecc-hhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEE
Confidence 39999999 9999999866555555544455555533 36666666533 7799999999998776 4 3489999
Q ss_pred ECCEEecC-CC---cEEEeeCC------CEEEcCCC-CCCCEEEEEEEE-cCCCceeee----EEEEEEeCCeeeeeCCC
Q psy14886 125 KDGNIIGS-GG---RRKIFENG------NLLISPVS-RDDSGIYSCTAT-NVHGMDESK----GRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 125 ~~g~~~~~-~~---~~~~~~~~------~l~i~~v~-~~d~G~y~C~~~-~~~g~~~~~----~~l~v~~~p~~~~~~~~ 188 (505)
+||.++.. .. ......++ +|.+.... ....=..+|.+. ...+..... ..-.|..+|.+.
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is----- 348 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS----- 348 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE-----
Confidence 99998872 11 11112222 23333321 122236799875 332222222 222333333322
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCC
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~ 220 (505)
+....| ...|.+.--|.-.+.+.|..+.
T Consensus 349 -~~F~~G---~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 349 -VTVEDG---DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred -EEEeCC---EEEEecccccCCCeeEEEEccC
Confidence 222223 3557766655445788897655
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.074 Score=60.24 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=109.3
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEE--EcccCceEeeEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA--KNQLKTRYSSAQ 80 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~--~~~~~~~~~~~~ 80 (505)
.|..+.+.=.+.+.....+.|.+++..-... . .....-.+ . -...|.|+-.. .|..+.......
T Consensus 1355 lG~tV~Ftatss~g~~~sw~WDFGDG~ts~t-----~----st~qNptH----T-Y~~pGtYTVTLTVtN~~gs~T~s~~ 1420 (2740)
T TIGR00864 1355 LGDEAQFQACAEPEFNYRYEWDFGGEEAAPL-----P----AAGAEVTF----I-YNDPGCYLVTVAASNNISAANDSAL 1420 (2740)
T ss_pred cCCeEEEEEecCCCCcEEEEEEeCCCCcccc-----c----cCCCcceE----E-cCCCceEEEEEEEECCCcceeeeeE
Confidence 4666666644433235678898865421100 0 00000011 2 45678997764 455555555666
Q ss_pred EEEEecCCCccCCCCCce-EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C 159 (505)
+.|....+.+........ .....+..+.+.=...+. .....|...+....... +-+. .-...|.|+.
T Consensus 1421 I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt-~~Sy~WdFGDGstst~q------nptH-----tY~~~GtYtV 1488 (2740)
T TIGR00864 1421 IEVLEPVGATSFKHNGSHGNNLELGQPYLFSAFGRAR-NASYLWDFGDGGLLEGP------EILH-----AFNSPGDFNI 1488 (2740)
T ss_pred EEEecCCCcceeeecCCcccccccCcceEEeecCCCC-ceEEEEECCCCCccCcc------ceEE-----EcCCCceEEE
Confidence 677642222111100000 001223333332222232 34777877432221111 0011 1245788876
Q ss_pred E--EEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee
Q psy14886 160 T--ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237 (505)
Q Consensus 160 ~--~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 237 (505)
. +.|..|.......+.|..+............+..+..+.+.-....+ ....|.|...+......
T Consensus 1489 tLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~G--s~v~ysWdFGDg~ts~~----------- 1555 (2740)
T TIGR00864 1489 RLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAG--DDVRFSWILCDHCTPIF----------- 1555 (2740)
T ss_pred EEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCC--CceeEEEEeCCCCcccc-----------
Confidence 5 56888887777777775543322222333334445556666333222 24578898754221110
Q ss_pred ecCCeEEEecCCCCCCEEEE--EEEEecCCcEEEEEEEEEcCC
Q psy14886 238 IDGGLLEITNASFADAGEYE--CVVKSTVGKISTKTTVIVEGP 278 (505)
Q Consensus 238 ~~~~~l~i~~~~~~~~g~y~--C~~~n~~g~~~~~~~l~v~~~ 278 (505)
.+.. .+. +....|.|+ ..+.|..|....+..+.|+.+
T Consensus 1556 -~npt-~~y--TY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~ 1594 (2740)
T TIGR00864 1556 -GGNT-IFY--TFRSVGTFNIIVTAENDVGAAQASIFLFVLQE 1594 (2740)
T ss_pred -CCCc-eEE--eecCCceEEEEEEEecCCCccceeEEEEEeec
Confidence 0111 111 113446665 556899998877777777653
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.6e-05 Score=53.11 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=41.2
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEEEe-eCC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF-ENG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~-~~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
+.|.|.+.+. |.+.|+|+++|+.+......... .++ .|.+.....++.+.|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899998765 88899999999987543211111 112 2555555556678999999987544
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=55.45 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=45.4
Q ss_pred CCCCCceEEEEEEeccC------CCeEEEEECCEE------Cc-CC---CCCCCCCCcEEEE------CCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP------DVTYSWFRNGEL------LN-SE---TLPLEDQDRYFIQ------DNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p------~~~~~W~~~~~~------l~-~~---~~~~~~~~~~~~~------~~~L~i~~~~~~ 58 (505)
+.+|++|+|.|...... ...+.|+|...- +. .. ......++|+... +.+|.|.+++ .
T Consensus 11 ~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~-~ 89 (119)
T cd05712 11 VQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ-P 89 (119)
T ss_pred EeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC-h
Confidence 36899999999885321 356999995321 10 00 0111223566552 2479999999 9
Q ss_pred CCCeEEEEEEEc
Q psy14886 59 RDPAMYQCRAKN 70 (505)
Q Consensus 59 ~d~G~Y~C~~~~ 70 (505)
+|+|.|.|.+..
T Consensus 90 ~Dsg~Y~C~~~~ 101 (119)
T cd05712 90 EDSGKYFFRVEL 101 (119)
T ss_pred hhCeEEEEEEEc
Confidence 999999998864
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=57.80 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=48.5
Q ss_pred CceEEeeCCCeEEEEeecCC--CCCCeEEEEEC--CEE----e--c-----------CCCcEEEeeC-----CCEEEcCC
Q psy14886 96 ESETYAGEGGNVTIFCNPEA--APKPKFVWKKD--GNI----I--G-----------SGGRRKIFEN-----GNLLISPV 149 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~--~p~~~i~W~~~--g~~----~--~-----------~~~~~~~~~~-----~~l~i~~v 149 (505)
+..+.+.+|++++|.|.+.+ .+...+.|++. +.. + . ...++.+..+ ..|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 35567889999999999876 56678999983 221 0 0 1234443322 24999999
Q ss_pred CCCCCEEEEEEEEc
Q psy14886 150 SRDDSGIYSCTATN 163 (505)
Q Consensus 150 ~~~d~G~y~C~~~~ 163 (505)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=53.62 Aligned_cols=73 Identities=30% Similarity=0.435 Sum_probs=48.5
Q ss_pred CCeEEEEeecCCCCC-CeEEEEECCE----Eec---C----------CCcEEEe----eCCCEEEcCCCCCCCEEEEEEE
Q psy14886 104 GGNVTIFCNPEAAPK-PKFVWKKDGN----IIG---S----------GGRRKIF----ENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 104 g~~v~l~C~~~~~p~-~~i~W~~~g~----~~~---~----------~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
|++++|.|....... ..|.|++... .+. . ..+.... .+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998654433 3799998421 110 0 1121221 1235999999999999999998
Q ss_pred E-cCCCceeeeEEEEE
Q psy14886 162 T-NVHGMDESKGRLIV 176 (505)
Q Consensus 162 ~-~~~g~~~~~~~l~v 176 (505)
. .+.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 46677777777776
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.1e-05 Score=54.59 Aligned_cols=71 Identities=23% Similarity=0.425 Sum_probs=47.5
Q ss_pred eEEEEeecCCCC---CCeEEEEEC--CE---Ee---cC----------CCcEEEee-----CCCEEEcCCCCCCCEEEEE
Q psy14886 106 NVTIFCNPEAAP---KPKFVWKKD--GN---II---GS----------GGRRKIFE-----NGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 106 ~v~l~C~~~~~p---~~~i~W~~~--g~---~~---~~----------~~~~~~~~-----~~~l~i~~v~~~d~G~y~C 159 (505)
+++|.|...... ...|.|++. +. .+ .. .+|..+.. +.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999875433 348999983 21 11 00 02333321 3369999999999999999
Q ss_pred EEEc-CCCceeeeEEEEE
Q psy14886 160 TATN-VHGMDESKGRLIV 176 (505)
Q Consensus 160 ~~~~-~~g~~~~~~~l~v 176 (505)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677666677766
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.3e-05 Score=51.86 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=41.6
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEEEe--eCC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF--ENG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~--~~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
++|.|.+.|. |...|+|+++|+.+......... .++ .|.+......+...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999874 77899999999987543222111 111 3556555566778999999876543
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=50.55 Aligned_cols=65 Identities=25% Similarity=0.464 Sum_probs=41.9
Q ss_pred ceEEEEEEec-cCC-CeEEEEECCEECcCCCCC----CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 6 DLTWTCEAFG-VPD-VTYSWFRNGELLNSETLP----LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 6 ~~~l~C~~~~-~p~-~~~~W~~~~~~l~~~~~~----~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.++|.|.+.| +|. ..++|+|||+++...... ....+.|. ..+.|.+.... .++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~-~~s~L~v~~~~-~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYF-LSSYLTVSAST-WESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEE-EEEEEEEcccc-CCCCCEEEEEEEEcC
Confidence 3689999998 464 799999999975422110 01122222 23567776656 667779999998643
|
|
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.6e-05 Score=55.99 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=44.9
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEE---C--------cCCCCC----CCCCCcEEE--E----CCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGEL---L--------NSETLP----LEDQDRYFI--Q----DNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~---l--------~~~~~~----~~~~~~~~~--~----~~~L~i~~~~~~ 58 (505)
|++|++++|.|.+.+. ....+.|+|.... . ...... .....++.. . ...|.|.+++ .
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~-~ 81 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK-P 81 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC-H
Confidence 5799999999998753 3468999994221 0 000000 011345543 2 1369999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0072 Score=54.55 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=92.5
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCceEee--EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSS--AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVW 123 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~--~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W 123 (505)
.|.|..++ ...+|.|+=...+..+..... +.|..+ .+|.+.+.+.+ +.+|+...-.|.+..+ | ...+.|
T Consensus 183 ~L~I~slt-~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-r~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 183 RLVIQELT-LATQGMYYWARGPADRPHRYGTWTRVRMF-RRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred eEEEEEcc-cccceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEE
Confidence 49999999 999999999977666544433 444444 36666666533 6799999999998776 4 348999
Q ss_pred EECCEEecCCCc----EEEeeCCCEEEcCCCCCCCE------EEEEEEE-cCCCceeee----EEEEEEeCCeeeeeCCC
Q psy14886 124 KKDGNIIGSGGR----RKIFENGNLLISPVSRDDSG------IYSCTAT-NVHGMDESK----GRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 124 ~~~g~~~~~~~~----~~~~~~~~l~i~~v~~~d~G------~y~C~~~-~~~g~~~~~----~~l~v~~~p~~~~~~~~ 188 (505)
++||..+..-.. .....++...++-++..+.+ ..+|.+. ......... ..-.|..+|.+..
T Consensus 257 f~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv---- 332 (466)
T PHA03270 257 FEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM---- 332 (466)
T ss_pred EeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE----
Confidence 999998753111 11122332223333333222 6789875 222222222 2223333333322
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
....| ...|.+.--|. .+++.|..++...
T Consensus 333 --~F~dG---~AVCtA~CVPe-gV~l~W~V~D~~~ 361 (466)
T PHA03270 333 --EFGGD---EAVCTAACVPE-GVTLAWLLGADPA 361 (466)
T ss_pred --EEeCC---EEEEeccccCC-CCEEEEEecCCCC
Confidence 22222 34577666654 6788898655433
|
|
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=54.57 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCeEEEEeecCCCC-------CCeEEEEECC-----EEe----cC----------CCcEEEee------CCCEEEcCCCC
Q psy14886 104 GGNVTIFCNPEAAP-------KPKFVWKKDG-----NII----GS----------GGRRKIFE------NGNLLISPVSR 151 (505)
Q Consensus 104 g~~v~l~C~~~~~p-------~~~i~W~~~g-----~~~----~~----------~~~~~~~~------~~~l~i~~v~~ 151 (505)
|++++|.|...-.| .+.|.|.+.. ... .. .+|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 77899999944222 3689998741 111 01 12333322 23699999999
Q ss_pred CCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876666666777764
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=53.59 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc--cCCeeeecCCeEEEecCCCCCCEEE
Q psy14886 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEY 256 (505)
Q Consensus 179 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y 256 (505)
+|..............|+.++|.|.+.+..++.+.+.|+++|..+........ .........+.|.+.....+....|
T Consensus 5 ~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~y 84 (111)
T cd05772 5 KPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQV 84 (111)
T ss_pred CCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCce
Confidence 33333333333445567889999999998777899999999999754211110 0000111122344443333333459
Q ss_pred EEEEEecCC
Q psy14886 257 ECVVKSTVG 265 (505)
Q Consensus 257 ~C~~~n~~g 265 (505)
+|.+.+...
T Consensus 85 tC~V~H~~l 93 (111)
T cd05772 85 TCEVQHRTL 93 (111)
T ss_pred EEEEEeCCC
Confidence 999988653
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00026 Score=52.62 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
.+|.|.+++.+|.|.|.|.+.+........+.|.|.
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 369999999999999999999888777777777774
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=52.49 Aligned_cols=68 Identities=16% Similarity=0.389 Sum_probs=43.5
Q ss_pred CCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---C-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 4 QADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 4 G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
++.++|.|.+.| +| ...|+|++||..+..... + ....+.|. ..+.|.+..-. ..+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~-~~S~L~v~~~~-w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFS-TTSELNVTQED-WKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEE-EEEEEEEchHH-hcCCCeEEEEEEECCe
Confidence 466899999998 56 589999999998743211 1 11122222 23456666444 3455689999987543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.8e-05 Score=54.49 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+++.++|.|.+.| +| ...|+|++||+++..... .. ..++.|.. .+.|.+..-. ..+...|+|.+.+..
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~-~s~L~v~~~~-w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSL-SSYLTLTKSD-WNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEE-EEEEEEcHHH-hCCCCeEEEEEEecC
Confidence 5788999999988 56 689999999999853311 01 11222322 2456665544 445668999998754
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=54.99 Aligned_cols=70 Identities=21% Similarity=0.405 Sum_probs=46.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC----CCeEEEEECCE------Eec----------CC----CcEEEee-----CCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP----KPKFVWKKDGN------IIG----------SG----GRRKIFE-----NGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~g~------~~~----------~~----~~~~~~~-----~~~l~i~ 147 (505)
..+.+.+|++++|.|...... ...+.|++... .+. .. .|..+.. +.+|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 556788999999999875432 24799986211 110 01 1122211 1359999
Q ss_pred CCCCCCCEEEEEEEEcCCC
Q psy14886 148 PVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g 166 (505)
+++.+|+|.|.|.+.+..+
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999997654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=49.86 Aligned_cols=65 Identities=32% Similarity=0.500 Sum_probs=46.2
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCC-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLP-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.|.|.+.+.+...+.|++++......... .............|.|.+++ ..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVT-LEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccC-cccCcEEEEEEecCc
Confidence 579999988678999999988776532210 00111222345679999999 999999999998654
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=50.58 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=41.1
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEEE-eeC-CC------EEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKI-FEN-GN------LLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~-~~~-~~------l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+.|.|.+.+. |.+.|+|+++|+.+........ ..+ ++ |.+.....++...|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899998876 8889999999998764322111 112 22 44445556677899999998653
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=55.44 Aligned_cols=68 Identities=28% Similarity=0.474 Sum_probs=48.4
Q ss_pred ceEEeeCCCeEEEEeecC-CCCCCeEEEEECCE-----Eec---C-----------CCcEEEeeCC-----CEEEcCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGN-----IIG---S-----------GGRRKIFENG-----NLLISPVSR 151 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~-----~~~---~-----------~~~~~~~~~~-----~l~i~~v~~ 151 (505)
..+.+.+|+++.|.|... ......+.|++... .+. . ..+..+..+. +|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 456789999999999987 44556999998221 111 0 1233333332 499999999
Q ss_pred CCCEEEEEEEEcC
Q psy14886 152 DDSGIYSCTATNV 164 (505)
Q Consensus 152 ~d~G~y~C~~~~~ 164 (505)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0038 Score=57.07 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=89.9
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcc-cCceEe--eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQ-LKTRYS--SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFV 122 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~-~~~~~~--~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~ 122 (505)
.|.|.+++ ..++|.|+=.+.+. .+.... .+.|.+.. +|.+.+.+.+ +.+|+...-.|.+..+ | ...+.
T Consensus 290 pL~I~slt-aATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr-~PsVsV~p~P----VL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 290 SLHILSLD-ASTEGTYIWRVIHTANKNVINEHHITVMSYK-RPNITVIGDP----VLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred ceEEeecc-cccCceEEEEEecCCCCceeeeeEEEEEEec-CCCccccCCc----cccCCCceEEEEeeeecCCCceEEE
Confidence 59999999 99999998665432 233333 45555553 6666666533 7799999999998776 4 34899
Q ss_pred EEECCEEecCC---CcEEEeeCCC------EEEcCCCCCC--CEEEEEEEE-cCCCceeee----EEEEEEeCCeeeeeC
Q psy14886 123 WKKDGNIIGSG---GRRKIFENGN------LLISPVSRDD--SGIYSCTAT-NVHGMDESK----GRLIVLHGPSYYEQL 186 (505)
Q Consensus 123 W~~~g~~~~~~---~~~~~~~~~~------l~i~~v~~~d--~G~y~C~~~-~~~g~~~~~----~~l~v~~~p~~~~~~ 186 (505)
|++||..+... .......+|. |.+......| .=..+|.+. ...+..... ..-.|...|.+.
T Consensus 364 Wf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtIS--- 440 (566)
T PHA03269 364 WTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVS--- 440 (566)
T ss_pred EEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEE---
Confidence 99998887642 1122223332 3332111111 224699875 333322221 222333333322
Q ss_pred CCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 187 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
+....| ...|.+.--|.-.+++.|..+...
T Consensus 441 ---m~FedG---~AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 441 ---IEIIDG---HIVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred ---EEEeCC---EEEEecccccCCCceEEEEecCCC
Confidence 222333 355776666554568889875544
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.9e-05 Score=54.59 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=45.2
Q ss_pred CCceEEEEEEe-ccCCCeEEEEECCEECcCC---CCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 4 QADLTWTCEAF-GVPDVTYSWFRNGELLNSE---TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 4 G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~---~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|+.+.|.|.+. ++|++.|+|+.++..+... .......+.+ ...+.|.+..-. .++...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~S~l~~~~~~-~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLF-TVSSTLTLTPTR-EDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTE-EEEEEEEEETTG-GGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcc-eEEEEEEEEcCh-HHCCeEEEEEEECCccC
Confidence 67999999885 5899999999998877211 0011122222 223578787665 66777899999976543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00039 Score=50.10 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=42.1
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
++|+.++|.|.+.| +| ...++|++||+++..... ....++.|.+ .+.|.+ . ..+...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~-~s~L~~---~-~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQI-LVMLET---T-PSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEE-EEEEEE---c-CCCCCEEEEEEEeCCC
Confidence 46889999999998 56 468999999998764310 0011112222 123433 3 3455589999987543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00037 Score=51.04 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=46.3
Q ss_pred EEeeCCCeEEEEeecCCC-CCCeEEEEECCE-----Ee--------cCCCcEEEeeC-----CCEEEcCCCCCCCEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAA-PKPKFVWKKDGN-----II--------GSGGRRKIFEN-----GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~-----~~--------~~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C 159 (505)
+.+.+|++++|.|..... ....+.|++... .+ ....+..+..+ ..|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 357899999999997653 455899998431 11 01233433321 249999999999999999
Q ss_pred EEEcCC
Q psy14886 160 TATNVH 165 (505)
Q Consensus 160 ~~~~~~ 165 (505)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987643
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0002 Score=53.36 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=56.9
Q ss_pred CCCceeeeeccccccEEEEEEeCCcc----ccC------CCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPRE----KQN------APNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~----~~~------~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
+||. +.+ ....+.|.|.+.+|... ..+ -.-..|.|.|.+.+... ....... ....+.|.+|.|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~-~~~~~~~----~~~~~~l~~L~p 76 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE-KKKEIET----KNSSVTLSDLKP 76 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC-EEEEEES----SSEEEEEES--T
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc-ceEEEee----cCCEEEEeCCCC
Confidence 5665 666 46788999999995311 111 01357999999988551 2122222 345678999999
Q ss_pred eeeEEEEEEEecC--CCCCCCCceEEEee
Q psy14886 458 YTEYEVKVQAIND--VGPGPESEVVTIWH 484 (505)
Q Consensus 458 ~~~Y~~~v~a~n~--~G~g~~s~~~~~~t 484 (505)
++.|.|+|.|... .-.|.+|++....|
T Consensus 77 ~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 77 GTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp TSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred CCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 9999999999332 34588888877665
|
They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T .... |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0004 Score=49.61 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCCC----CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLPL----EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~~----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|...+|.|.+.| +| ...++|.|||+++. ..... ..++.|.. .+.|.+ . ..+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~-~s~l~~---~-~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYL-LKSTEF---T-PTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEE-EEEEEE---C-CCCCCeEEEEEEECC
Confidence 34666799999998 55 68999999999876 31100 11112221 123333 4 556668999998643
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=55.00 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--C-EE--C---cC-CCC---CCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--G-EL--L---NS-ETL---PLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~-~~--l---~~-~~~---~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|++|++++|.|...+.. ...+.|||. | .+ | .. ... .....+|+... . ..|.|.+++ .+|
T Consensus 9 v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~-~~D 87 (117)
T cd04981 9 VKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT-PED 87 (117)
T ss_pred EcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC-HHH
Confidence 47899999999986432 467999993 2 22 1 00 000 11123566652 2 269999999 999
Q ss_pred CeEEEEEEEc
Q psy14886 61 PAMYQCRAKN 70 (505)
Q Consensus 61 ~G~Y~C~~~~ 70 (505)
+|.|.|.+..
T Consensus 88 sa~YyCa~~~ 97 (117)
T cd04981 88 TAVYYCARGL 97 (117)
T ss_pred CEEEEEEEEc
Confidence 9999998764
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0004 Score=51.81 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=46.2
Q ss_pred CCCceEEEEEEec-cCC-CeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCC-CeEEEEEEEcccCce
Q psy14886 3 NQADLTWTCEAFG-VPD-VTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERD-PAMYQCRAKNQLKTR 75 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p~-~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d-~G~Y~C~~~~~~~~~ 75 (505)
+++.++|.|.+.+ +|. ..|+|+||++.+..... .....+......+.|.+.... ..+ ...|+|.+.+.....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~-w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATE-WFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHH-hccCCCeEEEEEEEeCCcc
Confidence 5678999999998 564 79999999998764321 111111122233567776554 333 458999998765444
Q ss_pred E
Q psy14886 76 Y 76 (505)
Q Consensus 76 ~ 76 (505)
.
T Consensus 96 ~ 96 (115)
T cd05769 96 T 96 (115)
T ss_pred c
Confidence 3
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=51.43 Aligned_cols=69 Identities=25% Similarity=0.527 Sum_probs=43.6
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCC----CCCCC---CCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSET----LPLED---QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~----~~~~~---~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.| +| ...++|+|||+++.... .+... .+.|.+ .+.|.+..-. ..+...|+|.+.+..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~-~s~L~v~~~~-w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFL-YSKLTVSAED-WNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEE-EEEEEEcHHH-hcCCCcEEEEeEeCC
Confidence 35788999999998 45 47899999999875321 11111 123333 3456664433 334558999998654
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00034 Score=52.03 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=59.5
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCcc--ceee
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF--YYTE 460 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~~~ 460 (505)
......+|.++++... .-..+|.|++. ....+-..|.|+|+..+...|....... +...+..+|++.. +...
T Consensus 18 ~~~~lp~P~nv~~~s~-nf~~iL~W~~~---~~~~~~~~ytVq~~~~~~~~W~~v~~C~--~i~~~~Cdlt~~~~~~~~~ 91 (107)
T PF01108_consen 18 ASASLPAPQNVTVDSV-NFKHILRWDPG---PGSPPNVTYTVQYKKYGSSSWKDVPGCQ--NITETSCDLTDETSDPSES 91 (107)
T ss_dssp --SSGSSCEEEEEEEE-TTEEEEEEEES---TTSSSTEEEEEEEEESSTSCEEEECCEE--EESSSEEECTTCCTTTTSE
T ss_pred ccccCCCCCeeEEEEE-CCceEEEeCCC---CCCCCCeEEEEEEEecCCcceeecccee--cccccceeCcchhhcCcCC
Confidence 3444568999999755 44589999982 3344678999999977788999773222 1223566666643 7889
Q ss_pred EEEEEEEecCCCCC
Q psy14886 461 YEVKVQAINDVGPG 474 (505)
Q Consensus 461 Y~~~v~a~n~~G~g 474 (505)
|.+||+|.-....|
T Consensus 92 Y~~rV~A~~~~~~S 105 (107)
T PF01108_consen 92 YYARVRAEVGNQTS 105 (107)
T ss_dssp EEEEEEEEETTEEE
T ss_pred EEEEEEEEeCCccC
Confidence 99999998665444
|
... |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00045 Score=51.45 Aligned_cols=64 Identities=19% Similarity=0.396 Sum_probs=43.1
Q ss_pred EeeCCCeEEEEeecCCC-CCCeEEEEEC--C---EE---e---cC-----------CCcEEEe--eCC---CEEEcCCCC
Q psy14886 100 YAGEGGNVTIFCNPEAA-PKPKFVWKKD--G---NI---I---GS-----------GGRRKIF--ENG---NLLISPVSR 151 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p~~~i~W~~~--g---~~---~---~~-----------~~~~~~~--~~~---~l~i~~v~~ 151 (505)
.+.+|++++|.|.+.+. ....+.|++. | +. + .. ..++... .+. .|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998653 3448999983 2 10 0 00 1233321 112 399999999
Q ss_pred CCCEEEEEEEEc
Q psy14886 152 DDSGIYSCTATN 163 (505)
Q Consensus 152 ~d~G~y~C~~~~ 163 (505)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >KOG4258|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.7e-05 Score=72.79 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=86.4
Q ss_pred eEEeeeccCCceeEEEEEEEcCCCcCC-CCCCC-CCccCCC----CCCCCCCceeeeeccccccEEEEEEeCCccccCCC
Q psy14886 345 ASIENVLVPWSTYEFKVIAGNELGYGE-PSSPS-PQYNTPA----DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAP 418 (505)
Q Consensus 345 ~~~~~~L~~~~~y~~~v~a~n~~G~~~-~s~~~-~~~~t~~----~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~ 418 (505)
.+.+..|..++.|...+.|.|.++... .|... +..+|.+ +..++ |..+... .+.+++.|.|.+ |...||-
T Consensus 783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v~~RT~~~~~aD~i~g-~v~we~~-~~~~~v~l~w~E--P~~pNGl 858 (1025)
T KOG4258|consen 783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFVFARTMPTMGADDIPG-PVTWECH-IEMNSVILRWLE--PKEPNGL 858 (1025)
T ss_pred hhhhhccccchhhhhhHhhhcccccccccchhhhhhhccccccccccCCC-ceeEecc-cCcceEEEecCC--CCCCCcc
Confidence 344445999999999999999887611 12221 1222322 12222 3333333 278999999998 7889999
Q ss_pred CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 419 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
|++|.|.|+..+.++-.. -+.-......--..|+.|.| ..|.++|+|-.-+|.|++.+.+.+
T Consensus 859 i~~Y~Vk~r~~~~et~v~-cvsR~~~~k~~gv~l~~l~~-G~y~~~vratSlaGng~~t~~~~~ 920 (1025)
T KOG4258|consen 859 ILNYEVKYRRNGDETHVE-CVSRMDYAKAGGVYLKRLNP-GNYSVRVRATSLAGNGSWTESVIF 920 (1025)
T ss_pred EEEEEEEEeeccCcchhh-hhhhhhhhhcCceEEEecCC-CcEEEEEEEEeeccCCCCcCCcce
Confidence 999999999877443222 11111111223345666666 689999999999999999998886
|
|
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=47.04 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=44.6
Q ss_pred CeEEEEeecCCC-CCCeEEEEECCE----Eec-----------C--CCcEEEe----eCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 105 GNVTIFCNPEAA-PKPKFVWKKDGN----IIG-----------S--GGRRKIF----ENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 105 ~~v~l~C~~~~~-p~~~i~W~~~g~----~~~-----------~--~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
+.++|.|..... ...++.|.|... .+. . .+|.... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 367899987543 344889988321 111 0 1233332 23579999999999999999986
Q ss_pred c-CCCceeeeEEE
Q psy14886 163 N-VHGMDESKGRL 174 (505)
Q Consensus 163 ~-~~g~~~~~~~l 174 (505)
. +.|...+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 45665555443
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00064 Score=49.07 Aligned_cols=64 Identities=28% Similarity=0.510 Sum_probs=38.9
Q ss_pred CCceEEEEEEec-cCC-CeEEEEECCEECcCCCC--C-C-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 4 QADLTWTCEAFG-VPD-VTYSWFRNGELLNSETL--P-L-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 4 G~~~~l~C~~~~-~p~-~~~~W~~~~~~l~~~~~--~-~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
|+.++|.|.+.| +|. ..++|+++++.+..... . . ..++.|. ..+.|.+ . ..+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~-~~s~l~v---~-~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQ-LWVTLEV---P-PEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEE-EEEEEEE---C-CCCCCEEEEEEEeCC
Confidence 778999999999 464 69999999964432210 0 0 0111111 1223333 4 457789999998654
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >smart00060 FN3 Fibronectin type 3 domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0015 Score=45.52 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=48.4
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCC---CeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS---TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+|..+.+......++.++|.++...+. ..|.+.+...... .|....... ....+.+.+ |.+++.|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~~~~~Y 70 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTP---------SSTSYTLTG-LKPGTEY 70 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecC---------CccEEEEeC-cCCCCEE
Confidence 344466666777799999997654332 5677766544322 233321111 123445555 9999999
Q ss_pred EEEEEEEcCCCc
Q psy14886 358 EFKVIAGNELGY 369 (505)
Q Consensus 358 ~~~v~a~n~~G~ 369 (505)
.|+|.|.+..|.
T Consensus 71 ~v~v~a~~~~g~ 82 (83)
T smart00060 71 EFRVRAVNGAGE 82 (83)
T ss_pred EEEEEEEcccCC
Confidence 999999998654
|
One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00043 Score=46.93 Aligned_cols=59 Identities=34% Similarity=0.572 Sum_probs=43.8
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCc-------EEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGR-------RKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~-------~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+.|.|.+.+.+...+.|++++........ ........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998877789999998876543221 111223359999999999999999998765
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00072 Score=48.83 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCCCceEEEEEEecc--C-CCeEEEEECCEEC-cCC-CCCC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFGV--P-DVTYSWFRNGELL-NSE-TLPL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~--p-~~~~~W~~~~~~l-~~~-~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.|. | ...++|.||+... ... .... ..++.|.+ .+.|.+..-. ..+.-.|+|.+.+..
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~~~~-w~~g~~ysC~V~H~~ 86 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSV-TSTLNVSTDD-WISGDTFQCKVTHPD 86 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEE-EEEEEeCHHH-ccCCCcEEEEEECCC
Confidence 458899999999987 5 5889999987432 211 0001 11222222 2455555433 223347999998754
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=47.43 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.|+..+|.|.+.| +| +..++|.|||+.+..... ....++.|.+ .+.|.+. ..+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~----~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-FSYLNFT----PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-EEEEEEE----CCCCCeEEEEEEeCC
Confidence 4566899999998 56 589999999998763210 0111223332 2445554 334458999998654
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0012 Score=47.53 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.++.++|.|.+.| +| ...++|.|||+.+..... .....+.| ...+.|.+..-. ....|+|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty-~~~S~L~vt~~~---~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVY-STTSWLTVTKDS---LGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEE-EEEEEEEECchh---CCCeEEEEEEECC
Confidence 3567899999998 56 588999999998753311 11122222 223455554322 2335999998643
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00048 Score=50.48 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=44.6
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccC---CeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LET---PNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
+..+..++|.|.+.+..+..+.+.|.++|..+....... ... .......+.|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 344678999999999877789999999998875421100 000 01111122344433333456679999977543
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00019 Score=50.37 Aligned_cols=62 Identities=27% Similarity=0.333 Sum_probs=39.7
Q ss_pred ceEEEEEEeccCC--CeEEEEECCE--E---CcCC---CC---CCCCCCcEEEEC------CeEEEEcCCCCCCCeEEEE
Q psy14886 6 DLTWTCEAFGVPD--VTYSWFRNGE--L---LNSE---TL---PLEDQDRYFIQD------NVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 6 ~~~l~C~~~~~p~--~~~~W~~~~~--~---l~~~---~~---~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~C 66 (505)
+++|.|.+..... ..+.|++... . +... .. .....+|+.... .+|.|.+++ .+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLR-VEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCC-HHHCEEEEE
Confidence 4789999976443 4799999542 1 1100 00 002345665421 479999999 999999999
Q ss_pred EE
Q psy14886 67 RA 68 (505)
Q Consensus 67 ~~ 68 (505)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
|
|
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00045 Score=44.72 Aligned_cols=50 Identities=12% Similarity=0.427 Sum_probs=37.1
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
..+.|.|.|.+ +..|.|++ |..+.. ..+.+|.+.+.. .+..|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~------------~~~~tlnLGs~~-~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILE------------VSNTLLDLGSRI-NDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccc------------ccccEEeccCcc-cCCCcceEecCcc
Confidence 34689999965 35699999 544431 115678888888 8999999998865
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00079 Score=51.10 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=47.0
Q ss_pred ceEEeeCCCeEEEEeecCCC-CCCeEEEEEC--CEE---e---------cCCCcEEEee-----CCCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-PKPKFVWKKD--GNI---I---------GSGGRRKIFE-----NGNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~--g~~---~---------~~~~~~~~~~-----~~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|++++|.|..... ....+.|++. +.. + ...+++.+.. ..+|.|.++..+|+|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 45678999999999997653 4458999982 221 1 0123444431 1259999999999999
Q ss_pred EEEEEEc
Q psy14886 157 YSCTATN 163 (505)
Q Consensus 157 y~C~~~~ 163 (505)
|.|.+..
T Consensus 87 Y~C~~~~ 93 (116)
T cd07706 87 YFCALST 93 (116)
T ss_pred EEEEEEC
Confidence 9999985
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00094 Score=47.74 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCCCceEE-EEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTW-TCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l-~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.+|+.+.+ .|.+. |.|++.|+|+.+..............+.+.. .+.+.+...+ ..|.-.++|.+.+..-
T Consensus 13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-~S~~~l~p~r-~d~G~~vtC~V~H~al 85 (97)
T cd07704 13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-TSEYIWVPSR-HANGHPLTCVVSHPAL 85 (97)
T ss_pred eecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-EEEEEEEeCH-HHCCcEEEEEEeCccc
Confidence 468999999 99985 5899999999863322111111112233333 3467777666 6677789999987644
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00062 Score=42.83 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=34.3
Q ss_pred ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 46 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 46 ~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+..|.|.++. .+|+|.|.|.++|.......++.|.|..
T Consensus 16 ~~~nLwilpa~-~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPT-QSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccc-cccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 45689999999 9999999999998887888888888875
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00084 Score=49.64 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=42.0
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEEC--C--EE---ec---C------------CCcEEEeeCC---CEEEcCCCCCCCE
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKD--G--NI---IG---S------------GGRRKIFENG---NLLISPVSRDDSG 155 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~--g--~~---~~---~------------~~~~~~~~~~---~l~i~~v~~~d~G 155 (505)
+.+|++|+|.|.........+.|++. | .. +. . ..++...... .|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 67899999999986554457999983 2 11 10 0 1122221111 4999999999999
Q ss_pred EEEEEEE
Q psy14886 156 IYSCTAT 162 (505)
Q Consensus 156 ~y~C~~~ 162 (505)
.|.|.+.
T Consensus 83 tY~Ca~~ 89 (104)
T cd05720 83 YYFCSVA 89 (104)
T ss_pred EEEEEEc
Confidence 9999876
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=43.12 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=37.5
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+.|.|.|.+. ..|.|++ |..+.... +.+|.+..+..+..|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc
Confidence 446899999762 3699999 65554321 45688888889999999998876
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=47.00 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=41.1
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEE---EecCCCCCCEEEEEEEEecCC
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~~~g~y~C~~~n~~g 265 (505)
++.++|.|.+.+..++.+.+.|.++|......... .......++.+. ...+...+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~---~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES---GEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc---cceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 67899999999987778899999998643221100 011111122222 222334577899999977543
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00089 Score=48.95 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=44.9
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecC------CeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
...+..++|.|.+.+..+..+.+.|.++|..+...... .......+ +.|.+..-...+...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT---STTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec---cccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 34567799999999987778999999999987532110 01111112 2344444444457789999987543
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=44.10 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=41.5
Q ss_pred EEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 198 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
++|.|.+.+..++.+.+.|+++|..+....... ..........+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 689999999877778999999998743321000 0000111112345555545667789999997754
|
|
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=46.88 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
....++|.|.+.+.-+..+.+.|.++|..+....... ..........+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3456899999999877789999999998863321100 000111111233444443444667899999886543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0021 Score=46.25 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=40.6
Q ss_pred CceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 5 ADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 5 ~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
....+.|.+. |.|++.|+|+++........... ...+.....+.|.+.... .+|...|+|.+.+....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~-~~~g~~tv~S~l~~~p~~-~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKE-NPNGTVTVTSEYRLVPSR-EANGKELTCVVSHPTLQ 84 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeec-CCCCCEEEEEEEEEecCH-HHCCCEEEEEEeCcccC
Confidence 4568899994 68999999999711111000000 111222233567776666 55666899999986643
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=46.50 Aligned_cols=67 Identities=25% Similarity=0.512 Sum_probs=42.8
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.|+.++|.|.+.+ +| ...|+|+++|..+..... .. ..++.|.+ .+.|.+. ..+...|+|.+.+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~----~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSV-TSSLTVT----WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEE-EEEEEEE----TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceee-eEEEEec----CCCCCEEEEEEEECCC
Confidence 35889999999998 56 578999999998763311 00 11222222 2456665 2344489999987554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=47.87 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=45.6
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC---cccCC-eeeecCCeEEEecCCCCC-CEEEEEEEEecCCcEE
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN---ELETP-NINIDGGLLEITNASFAD-AGEYECVVKSTVGKIS 268 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 268 (505)
.+..++|.|.+.+..+..+.+.|.+++..+...... ..... ......+.|.+...+..+ ...|+|.+.+......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 456789999999987778999999999887643210 00000 111122344444433323 5689999987655433
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=48.12 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=45.3
Q ss_pred ceEEeeCCCeEEEEeecCCCC------CCeEEEEECC--E----Eec--C---------CCcEEEee---C--CCEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP------KPKFVWKKDG--N----IIG--S---------GGRRKIFE---N--GNLLISP 148 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p------~~~i~W~~~g--~----~~~--~---------~~~~~~~~---~--~~l~i~~ 148 (505)
..+.+.+|++|+|.|...... ...+.|++.. . .+. . .+|+.... . .+|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 456789999999999764221 2468999842 1 110 0 12333321 1 2599999
Q ss_pred CCCCCCEEEEEEEEcC
Q psy14886 149 VSRDDSGIYSCTATNV 164 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~ 164 (505)
++.+|+|.|.|.+...
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999998753
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=49.30 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=45.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CE-E--e---cC-----------CCcEEEeeC---C--CEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GN-I--I---GS-----------GGRRKIFEN---G--NLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~-~--~---~~-----------~~~~~~~~~---~--~l~i~~v~ 150 (505)
....+.+|++++|.|...+.. ...+.|++. |+ + + .. .+++....+ . .|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 345689999999999875432 447999982 22 1 1 00 123333211 1 49999999
Q ss_pred CCCCEEEEEEEEc
Q psy14886 151 RDDSGIYSCTATN 163 (505)
Q Consensus 151 ~~d~G~y~C~~~~ 163 (505)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998864
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=46.43 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=41.2
Q ss_pred CceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 5 ADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 5 ~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
..+.+.|.+. |.|.+.|+|+++..............+.+. ..+.|.+.... .+|...|+|.+.+.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~t-v~S~l~~~P~~-~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVT-VTSEYSLVPTP-EANGKEVTCKVEHETLQE 85 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEE-EEEEEEEecCH-HHCCCEEEEEEeCcccCC
Confidence 3568999886 589999999997221110000001122222 23467776656 556668999999866443
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00096 Score=43.00 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=34.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.|.+|+|+|...+. .+.|.+|++.+.. .+..+.+.+-. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g-------------~~~~~~~~~~~--e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQG-------------SDEKYLSLNHF--SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCC-------------CCceEEeeccC--CCCceEEEEeCC
Confidence 48899999986532 2999999966552 12334444433 689999999864
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=41.72 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=35.2
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
-..|.+|+|+|..... .+.|.+++..+..... .+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~-------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE-------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCCc-------eEEeeccC-CCCceEEEEeCC
Confidence 3468999999976533 3999999865543222 23333333 789999999953
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=47.12 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=43.6
Q ss_pred eEEEeeccEEEEEEeeecC-CCCeEEEEEeCCEEecCCCC-CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 190 ITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDL-NELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 190 ~~~~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
.....+..++|.|.+.+.. +..+.+.|.++|.. ..... ............+.|.+..-.......|+|.+.+...
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3344677899999999976 66799999998865 11000 0000001111123444443334555679999987654
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0029 Score=45.57 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=42.8
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEE---ecCCCCCCEEEEEEEEecCC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI---TNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~~~g~y~C~~~n~~g 265 (505)
.+..++|.|.+.+.-++.+.+.|.++|..+...... .......++++.+ ..+...+...|+|.+.+...
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS---TELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee---cceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 567899999999988888999999999887553100 0111111112221 12233456689999877543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=45.47 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=41.2
Q ss_pred CCCCCceEEEEEEec-cCC--CeEEEEECCEECcCCCCCCCCCC-cEEEECCeEEEEcCCCCCCCe-EEEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-VPD--VTYSWFRNGELLNSETLPLEDQD-RYFIQDNVLTIRYLNPERDPA-MYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~--~~~~W~~~~~~l~~~~~~~~~~~-~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~ 69 (505)
+.+|..++|.|.+.+ .|. ..+.|++++..+......-.... ........+.+.. + .+|.| .|.|.|.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-t-reD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-T-IEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-c-hhhCCcEEEEEEE
Confidence 468999999999975 564 88999998877663321000000 0001223455555 4 56666 8999986
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0044 Score=45.17 Aligned_cols=85 Identities=19% Similarity=0.370 Sum_probs=61.4
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee-----EEEEcCCcccee
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI-----AVVRIPSEFYYT 459 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~L~p~~ 459 (505)
.|++.|.++.-.......++-.|++ +..++.+ ..|.|.|...+ ..|..-.......... +.+.-.+..-.+
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~--g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~ 81 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEP--GSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFV 81 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEE--ESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSS
T ss_pred cCCCCCccCccCCCCCCcEEEEeeC--CCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEE
Confidence 3567888888888888999999999 6665543 44999999987 6666544333222223 566666778899
Q ss_pred eEEEEEEEecCCCC
Q psy14886 460 EYEVKVQAINDVGP 473 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~ 473 (505)
.|.|+|.|.|..|-
T Consensus 82 ~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 82 PYCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EEEEEEEeccCCCc
Confidence 99999999998874
|
The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C .... |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0036 Score=45.08 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CCCC-CCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 4 QADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PLED-QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 4 G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
++.++|.|.+.| +| ...|+|.|||+. ..... .... .+.|.. .+.|.+..-. ......|+|.+.+..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~-~s~L~v~~~~-w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTA-SSQLTVPASE-WKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEE-EEEEEEeHHH-cCCCCcEEEEEEeCC
Confidence 567999999998 45 588999999997 32211 0111 233322 2456665433 223457999998754
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0034 Score=44.87 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=44.0
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEe---cCCCCCCEEEEEEEEecC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKSTV 264 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g~y~C~~~n~~ 264 (505)
.|....|.|.+.+.-++.+.+.|.++|..+. +.. ........+.++.+. .+...+...|+|.+.+..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~---~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE---QSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE---ECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 4556789999999888899999999999875 321 111222223333322 234567778999997743
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0026 Score=45.64 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC----cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN----ELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
.+...+|.|.+.+..+.++.+.|.++|..+...... ......+. ..+.|.+. ..+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~-~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQ-KFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEE-EEEEEEEE---CCCCCeEEEEEEeCC
Confidence 355679999999987778999999999887542110 00001111 11233333 345568999987753
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0025 Score=45.92 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=40.9
Q ss_pred CCCceEEEEEEec-c-C-CCeEEEEECCEECcCCC-CCCCCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFG-V-P-DVTYSWFRNGELLNSET-LPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~-p-~~~~~W~~~~~~l~~~~-~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~~~~ 73 (505)
.++.++|.|.+.+ + | +..|+|.++|..-.... .....++.|.+ .+.|.+..-. ..+| .|+|.+.+...
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~-~S~L~v~~~~--W~~g~~ytC~V~H~~l 90 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSV-SSVLPGCAEE--WNKGEPFACTVTHPEG 90 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEE-EEEEEeCHHH--hcCCCeEEEEEECCCc
Confidence 4678999999998 4 5 58899999987511101 11112223332 3566665333 3444 59999987553
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0028 Score=45.56 Aligned_cols=34 Identities=9% Similarity=-0.079 Sum_probs=28.2
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecC
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~ 225 (505)
...+..++|.|.+.+.-++.+.+.|.++|..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3345678999999998778999999999988654
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0059 Score=44.89 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCCCceEEEEEEeccC--C-CeEEEEECCE-ECc-------CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVP--D-VTYSWFRNGE-LLN-------SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~-~~~~W~~~~~-~l~-------~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~ 63 (505)
|+.|+.++|.|.+++.. . -.++|+|... .+. .+.......+++... .-+|.|.+++ .+|++.
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~-a~DTa~ 88 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR-ANQTDI 88 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC-HHHCeE
Confidence 46899999999997743 3 6789999421 210 011111133444332 2379999999 999999
Q ss_pred EEEEE
Q psy14886 64 YQCRA 68 (505)
Q Consensus 64 Y~C~~ 68 (505)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99965
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00029 Score=67.78 Aligned_cols=170 Identities=23% Similarity=0.348 Sum_probs=98.9
Q ss_pred CCCCceEEEEEEeccC----CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCe---EEEEE--EEccc
Q psy14886 2 DNQADLTWTCEAFGVP----DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA---MYQCR--AKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p----~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G---~Y~C~--~~~~~ 72 (505)
..|..+.|.|.+...+ ...-.|..+.+........ .........-.+.|...+ .++.| .|.|. +....
T Consensus 37 i~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d--~tsg~~~~~~si~Isr~~-v~~~~~~~d~~cQc~a~~~~ 113 (909)
T KOG1480|consen 37 IKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTD--ETSGLGVREVSIDISRQQ-VETSGGPEDYWCQCVAWSDD 113 (909)
T ss_pred ecCCCccceecCCcccccccccChhhhcCccceeeeccC--cccceeEEeeeeeeehhh-hhcccCccceeeeeeeecCC
Confidence 3577888999986433 2344677654433211110 011111122344455544 44443 57554 55444
Q ss_pred CceEee-EEEEEEecCCCccCCCCCceEEeeCCCeEEEEee-cCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCC
Q psy14886 73 KTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS 150 (505)
Q Consensus 73 ~~~~~~-~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~ 150 (505)
|...+. +.+.+....-.+...+ ....|..+..+.|.|. ..+.|...+.|++++..+.++..........+.+..+.
T Consensus 114 g~~~s~~a~vr~ay~rk~f~~~p--~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~ar 191 (909)
T KOG1480|consen 114 GTVKSRKATVRIAYLRKHFEQSP--VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQAR 191 (909)
T ss_pred CcchhhhHHHHHHHHHHhhccCh--hhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchh
Confidence 422221 1122211111222222 2234777888889888 46678889999999998887666666677789999999
Q ss_pred CCCCEEEEEEEEcCCCceeee-EEEEE
Q psy14886 151 RDDSGIYSCTATNVHGMDESK-GRLIV 176 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~-~~l~v 176 (505)
..|.|.|+|.|.|..+..... +.+.+
T Consensus 192 lsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 192 LSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred hhhcccceeeeehhhccccccceEEEE
Confidence 999999999999877655443 44444
|
|
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0045 Score=44.30 Aligned_cols=64 Identities=23% Similarity=0.475 Sum_probs=41.5
Q ss_pred CCeEEEEeec-CCCCCCeEEEEECCEEecCCCcE--EEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 104 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRR--KIFEN------GNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 104 g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~--~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|+.+.|.|.+ .++|.+.|.|+.++..+...... ....+ ..|.+..-...+...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6799999975 55688999999988776211000 11111 23666555556778999999986543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0051 Score=44.43 Aligned_cols=73 Identities=12% Similarity=0.258 Sum_probs=43.6
Q ss_pred ceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC------eEEEecCCCCCCEEEEEEEE
Q psy14886 189 KITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVK 261 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~g~y~C~~~ 261 (505)
...+..++.++|.|.+.+. .++.+.+.|.+++......... ......++ .|.+..-...+.-.|+|.+.
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~----~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ----PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec----ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 3345568889999999999 7778999999987433211100 01111222 33333323334567999998
Q ss_pred ecCC
Q psy14886 262 STVG 265 (505)
Q Consensus 262 n~~g 265 (505)
+...
T Consensus 84 H~~l 87 (96)
T cd07696 84 HPDL 87 (96)
T ss_pred CCCC
Confidence 7543
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0046 Score=43.50 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=44.0
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc---cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
+..+.|.|.+.+..+..+.+.|.++|..+........ .........+.|.+. ......|+|.+.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 6789999999998778899999999988765321100 000111111234444 45566899999876543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.018 Score=41.30 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=44.6
Q ss_pred ceEEeeCCCeEEE-Eeec-CCCCCCeEEEEECCEEecCCCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTI-FCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l-~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+...+.+|+.+.+ .|.+ .|.|.++|+|+.+..... ........++ .+.+......|.-.++|.+.+..-
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 4466788999988 8885 566888999998633221 1111222233 355555556677799999987643
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.017 Score=41.66 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=41.5
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc--ccC-CeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE--LET-PNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
.++.++|.|.+.+.-+..+.+.|.++|.. ....... ... .......+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45678999999998777899999999987 3321000 000 0011111234444333233567999998754
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0076 Score=38.07 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=33.2
Q ss_pred eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeC
Q psy14886 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 179 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~ 179 (505)
....|.|-++..+|+|.|.|...|..-....++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3456999999999999999999988777777788887543
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0052 Score=42.94 Aligned_cols=56 Identities=27% Similarity=0.455 Sum_probs=35.5
Q ss_pred eEEEEeecCCCCC--CeEEEEECCE--E---ec-------------CCCcEEEeeC-----CCEEEcCCCCCCCEEEEEE
Q psy14886 106 NVTIFCNPEAAPK--PKFVWKKDGN--I---IG-------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 106 ~v~l~C~~~~~p~--~~i~W~~~g~--~---~~-------------~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~ 160 (505)
++.|.|....... ..+.|++... . +. ...++..... .+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 3688998765543 3788987331 1 10 0123333222 2499999999999999996
Q ss_pred E
Q psy14886 161 A 161 (505)
Q Consensus 161 ~ 161 (505)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=50.00 Aligned_cols=67 Identities=13% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCceEEEEEEecc-----CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 4 QADLTWTCEAFGV-----PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 4 G~~~~l~C~~~~~-----p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
.+++.+.|.++.. ....+.|.++++.+-.. +.. ..++|.+.... .-.|+|+|+|.+........
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~-------n~t--n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKK-------NNT--NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEe-------cCC--cceEEEEeccc--cCCCceeEEEeecccCccEE
Confidence 4789999999652 25679999999877522 111 23567777655 67999999998765544433
Q ss_pred EEE
Q psy14886 79 AQL 81 (505)
Q Consensus 79 ~~l 81 (505)
+.+
T Consensus 100 IeL 102 (286)
T PHA03042 100 IEL 102 (286)
T ss_pred EEE
Confidence 333
|
|
| >PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.7 Score=40.90 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=75.9
Q ss_pred CceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCC--CCCCCCCceeeee--c--cccccEEEEEEeCCccc
Q psy14886 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA--DKPYQAPSRIGGG--G--GKIGDLSISWEPLPREK 414 (505)
Q Consensus 341 ~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~--~~p~~~P~~~~~~--~--~~~~~v~l~W~~~~~~~ 414 (505)
+...+.+.+ +.++..|.+++.+.|....... .-.....+.+ ..-|.-|.+..+. . .+-++++|.|.+ ..+
T Consensus 126 ~~~~f~l~~-~~~g~~Yliri~~~~~~e~~~~-~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~--s~d 201 (300)
T PF10179_consen 126 GLRHFRLSG-VKPGERYLIRIQISNSDEGPST-FKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLG--SPD 201 (300)
T ss_pred ceEEEEECC-CCCCCeEEEEEEccCCCCCceE-EEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEec--CCC
Confidence 444555555 9999999999987776443221 1100012222 2223345555553 3 456899999997 333
Q ss_pred cCCCCceEEEEEEEcCCC--------------------CcEEEEee--ecCc------eeeEEEEcCCccceeeEEEEEE
Q psy14886 415 QNAPNIYYKIFWRKKNDT--------------------EFQSETLK--EYGN------VGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 415 ~~~~i~~Y~v~~~~~~~~--------------------~~~~~~~~--~~~~------~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
.. ..|=|..++.... ....+... ...| ......+|.+|+||+.|.|.|.
T Consensus 202 ~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~ 278 (300)
T PF10179_consen 202 RS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVY 278 (300)
T ss_pred CC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEE
Confidence 22 4566655544311 01111221 1111 1224557999999999999999
Q ss_pred EecCCCCCCCCceEEEee
Q psy14886 467 AINDVGPGPESEVVTIWH 484 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t 484 (505)
|.-..|.+-+=....++|
T Consensus 279 ~~~~~G~sl~Y~s~~VkT 296 (300)
T PF10179_consen 279 VNGPSGQSLPYRSKWVKT 296 (300)
T ss_pred EecCCCceeecceEEEEe
Confidence 987777654433333333
|
The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.028 Score=40.47 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 104 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 104 g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
.....+.|.+ .|.|.++|+|+++..... ........++ .|.+.....+|+..|+|.+.+..-...
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 3456889997 567999999999721110 0111111222 366655556677799999998764433
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=41.10 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=40.2
Q ss_pred CeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 105 GNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 105 ~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.|.+. +.|.+.|+|+++...... .......++ .|.+.....+|+..|+|.+.+........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 3568999865 668889999987221110 111111122 366655556677799999998754444333
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.011 Score=44.48 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=43.4
Q ss_pred eeCCCeEEEEeecCCC-----CCCeEEEEECCEEecC--CCcEEE-e-------------eCCCEEEcCCCCCCCEEEEE
Q psy14886 101 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGS--GGRRKI-F-------------ENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~--~~~~~~-~-------------~~~~l~i~~v~~~d~G~y~C 159 (505)
..-+++|.|.|.+... +...|.|..+|..+.. +..... . .+.+|.+.....- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 4567899999998652 2347999999987642 111111 0 1123666654433 799999
Q ss_pred EEEcCCCceeeeEEEEE
Q psy14886 160 TATNVHGMDESKGRLIV 176 (505)
Q Consensus 160 ~~~~~~g~~~~~~~l~v 176 (505)
.+.......+..+.|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99887766666666655
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.07 Score=43.22 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=67.7
Q ss_pred CCCCceEEEEEEecc-CCCeEEEEECCE-ECcCC-----CC---CC---CCCCcE--EE--ECCeEEEEcCCCCCCCeEE
Q psy14886 2 DNQADLTWTCEAFGV-PDVTYSWFRNGE-LLNSE-----TL---PL---EDQDRY--FI--QDNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~~~~~W~~~~~-~l~~~-----~~---~~---~~~~~~--~~--~~~~L~i~~~~~~~d~G~Y 64 (505)
..|++|.|.|..... .-....|.+++. .|... .+ .. .-...+ +. ..++|+|.++. ....|-|
T Consensus 37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~-i~N~GCY 115 (251)
T PHA02982 37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPD-PQNLGCF 115 (251)
T ss_pred cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCC-cccCCce
Confidence 368999999997432 235678998543 22211 00 00 001111 22 35799999999 9999999
Q ss_pred EEEEEcccCce-EeeEEEEEEecCCCccCCCCCceEEeeCC-CeEEEEeecCCCCCCeEEEEECCEE
Q psy14886 65 QCRAKNQLKTR-YSSAQLRVLTLKPSFKKRPLESETYAGEG-GNVTIFCNPEAAPKPKFVWKKDGNI 129 (505)
Q Consensus 65 ~C~~~~~~~~~-~~~~~l~v~~~~p~~~~~~~~~~~~v~~g-~~v~l~C~~~~~p~~~i~W~~~g~~ 129 (505)
+|.+....+.. +....+.|...- ......++ ..-.+.|-+......-..|.-+|..
T Consensus 116 tc~~ks~~~k~E~c~kCl~V~~~~---------V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 116 TCEAKDAEGKEETCEKCLEIQKED---------ILYVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred EEEEecCCCchheeheeeeEecce---------EEEEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99998755433 324455553210 11112233 3446789875554333489888764
|
|
| >PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.1 Score=38.75 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=53.4
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEe--eeccccceeeeecCceeeEEeeec-cCC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV--SEHVIGKEVDRYTGRKEASIENVL-VPW 354 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 354 (505)
...+|.++++... .-...|+|+++... .+-..|.|+|+......|..+ ...+. ....-+...+ ...
T Consensus 21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~-~~~~~ytVq~~~~~~~~W~~v~~C~~i~---------~~~Cdlt~~~~~~~ 89 (107)
T PF01108_consen 21 SLPAPQNVTVDSV-NFKHILRWDPGPGS-PPNVTYTVQYKKYGSSSWKDVPGCQNIT---------ETSCDLTDETSDPS 89 (107)
T ss_dssp SGSSCEEEEEEEE-TTEEEEEEEESTTS-SSTEEEEEEEEESSTSCEEEECCEEEES---------SSEEECTTCCTTTT
T ss_pred cCCCCCeeEEEEE-CCceEEEeCCCCCC-CCCeEEEEEEEecCCcceeeccceeccc---------ccceeCcchhhcCc
Confidence 3446677777555 45578999985443 355789999997778899987 33332 1122222212 367
Q ss_pred ceeEEEEEEEcCCCcC
Q psy14886 355 STYEFKVIAGNELGYG 370 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~ 370 (505)
..|.+||+|.-....|
T Consensus 90 ~~Y~~rV~A~~~~~~S 105 (107)
T PF01108_consen 90 ESYYARVRAEVGNQTS 105 (107)
T ss_dssp SEEEEEEEEEETTEEE
T ss_pred CCEEEEEEEEeCCccC
Confidence 8899999997665443
|
... |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.6 Score=40.84 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCC-C--ceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEe
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVH-G--MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTH 218 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~-g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~ 218 (505)
.|.|.++...++|.|.=++.+.. + .....+.+.+...|.+.... -.+..|+...-.|.+..+ |.....+.|+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 39999999999999986654322 2 22344666766666543332 346789999999999875 45568899999
Q ss_pred CCEEecC
Q psy14886 219 NGVRIGN 225 (505)
Q Consensus 219 ~~~~~~~ 225 (505)
++..+..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9888874
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.004 Score=60.30 Aligned_cols=77 Identities=25% Similarity=0.453 Sum_probs=57.9
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-e
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~ 78 (505)
|.++..+.|.|.. .+.|...++|+|++..+.. +.+-+......|.|..+. ..|.|+|+|.|.|..+.... .
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p------d~n~~~~~d~~li~~~ar-lsd~~nytc~a~ni~~~r~~~~ 213 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP------DANVIRASDHNLIISQAR-LSDSGNYTCEATNIVAKRKSDP 213 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCc------cccchhhhcCCccccchh-hhhcccceeeeehhhccccccc
Confidence 4567888999997 4678899999999988773 233334456789999999 99999999999987665443 3
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.+.++
T Consensus 214 ~~v~vy 219 (909)
T KOG1480|consen 214 ATVQVY 219 (909)
T ss_pred eEEEEE
Confidence 444443
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.1 Score=40.86 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHN 219 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~ 219 (505)
.|.|.++...++|.|+-...+..... .+...+.+...|+.+... .-.+..|+...-.|.+..+ |+....+.|+.+
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 38899999999997765555533322 233455555544433222 2246789999999999875 455688999999
Q ss_pred CEEecCCCCCcccCC------eeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 220 GVRIGNMDLNELETP------NINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 220 ~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
|........ ..... .....-+++.+.....+..-..+|.+.-..+.
T Consensus 286 G~~V~~~~~-rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~ 337 (490)
T PHA03271 286 GNIATPRKD-RDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGD 337 (490)
T ss_pred CccccCccc-cceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCC
Confidence 988865331 11111 00011123333333233444789999765543
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.046 Score=38.98 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=39.8
Q ss_pred eeCCCeEEEEeecCCC-CC--CeEEEEECCEEecCCCcEEE-------eeCCCEEEcCCCCCCCE-EEEEEEEcC
Q psy14886 101 AGEGGNVTIFCNPEAA-PK--PKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSG-IYSCTATNV 164 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-p~--~~i~W~~~g~~~~~~~~~~~-------~~~~~l~i~~v~~~d~G-~y~C~~~~~ 164 (505)
+.+|..+++.|.+.+. |. ..+.|++....+....-... .....+++... ++|.| .|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 5789999999998654 54 58999987665543221110 01123556554 55555 999999743
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.016 Score=48.88 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=40.7
Q ss_pred CCeEEEEE-CCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 118 KPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 118 ~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.|.+.|.. +|+.+...++..+...|.|.+.+...+++|.|+|.....
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 57899998 566777777888899999999999999999999998754
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.016 Score=43.69 Aligned_cols=82 Identities=12% Similarity=0.226 Sum_probs=47.3
Q ss_pred eeccEEEEEEeee---cCCCCeEEEEEeCCEEecCCCCCccc----------CCeeeecCCeEEEecCCCCCCEEEEEEE
Q psy14886 194 AHRNLQLRCSAHT---EELLDVAYIWTHNGVRIGNMDLNELE----------TPNINIDGGLLEITNASFADAGEYECVV 260 (505)
Q Consensus 194 ~g~~~~l~C~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 260 (505)
=++++.|.|.+.. ...+.+.+.|..++..+...+..... -..+...+.+|.+...+.- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 3567899999865 22345778899988876432211000 0111123345777664433 89999999
Q ss_pred EecCCcEEEEEEEEEc
Q psy14886 261 KSTVGKISTKTTVIVE 276 (505)
Q Consensus 261 ~n~~g~~~~~~~l~v~ 276 (505)
.....+.+..+.|..+
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9988888888877764
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.3 Score=40.80 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCcee--eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEe
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTH 218 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~ 218 (505)
..|.|..++...+|.|+=...+..+... ..+.+.....|.+.... -.+..|+...-.|.+..+ |.....+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 3599999999999999998776655333 33556665566644332 246789999999999875 44568899999
Q ss_pred CCEEecC
Q psy14886 219 NGVRIGN 225 (505)
Q Consensus 219 ~~~~~~~ 225 (505)
++..+..
T Consensus 259 ng~~V~~ 265 (466)
T PHA03270 259 GGDEVFA 265 (466)
T ss_pred CCccccC
Confidence 9998864
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.021 Score=52.24 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE---CCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR---NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~---~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|..|++..++|-+.|.+.+.|.|.+ |+..+.+..... ..+-...+...|.|-+.. ..|+|.|+|.+.+.+|..+.
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~-~e~p~vtstcql~ic~ew-q~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQT-VENPVVTSTCQLVICNEW-QADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeecCccc-cCCcceeeeeeEEEcchh-hcCCCceeeccccccceeec
Confidence 4578999999999999999999987 554444321111 011111234679999999 99999999999999999888
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.+.+..
T Consensus 286 dv~c~s~~ 293 (560)
T KOG4597|consen 286 DVPCSSVK 293 (560)
T ss_pred cceeeeec
Confidence 88777664
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.023 Score=48.04 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCCeEEEEECC-EECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 17 PDVTYSWFRNG-ELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 17 p~~~~~W~~~~-~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.+|.+.|..++ ..+. ...++.+ ..+.|.+.+.. .+++|.|+|....
T Consensus 11 iDP~y~W~GP~g~~l~-------gn~~~nIT~TG~L~~~~F~-esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLS-------GNSYVNITETGKLMFKNFQ-ESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcccC-------CCCeEEEccCceEEeeccc-cccCCceEEEEEE
Confidence 37899999954 4444 4456665 56889999999 9999999999874
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.83 Score=42.34 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=73.5
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeee--EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESK--GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHN 219 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~ 219 (505)
.|.|..+...++|.|+=...+..+..... +.+.....|.+.... ..+..|+...-.|.+..+ |.....+.|+.+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 39999999999999986655544433333 444445566543332 346789999999999875 455688999999
Q ss_pred CEEecCCCCCcccCC----eeeecCCeEEEecCC-CCCCEEEEEEEEecCCc
Q psy14886 220 GVRIGNMDLNELETP----NINIDGGLLEITNAS-FADAGEYECVVKSTVGK 266 (505)
Q Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~ 266 (505)
+..+........... ......+++.+.... .+..-..+|.+.-....
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 999873222111111 111112334444322 23345789998654443
|
|
| >PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.15 Score=37.24 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=60.0
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+|+.|..+.+........+.-|+++..++.+.. |.+.|...+ ..|..+............ ......-..+..-...|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~~-y~L~Y~~~~-~~~~eCp~~~~~~~ns~~-~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLPTN-YTLFYKKEG-EEWKECPDYSTSGPNSTV-RHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTSTCE-EEEEEEETT-SEEEEESESSTTETTEEE-EEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCCCc-EEEEEEeCC-CCCccCCCeEecCCCCce-eEEEEcCCCCeEEEEEE
Confidence 577888888888888999999999887665544 999999887 778877543321000000 00012222346778899
Q ss_pred EEEEEEEcCCCcC
Q psy14886 358 EFKVIAGNELGYG 370 (505)
Q Consensus 358 ~~~v~a~n~~G~~ 370 (505)
.++|.|.|..|..
T Consensus 84 ~i~V~a~~~~~~~ 96 (104)
T PF09067_consen 84 CIQVEATNALGSI 96 (104)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEeccCCCcE
Confidence 9999999998753
|
The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C .... |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.099 Score=44.46 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=46.8
Q ss_pred eeCCCeEEEEeecCCC-----CCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 101 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
..-++++.+.|.++.- ....+.|..+|..+...+.. ...+|.+... ..-.|.|+|.|.+..........|.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 4467899999998653 34589999999877532221 1234555433 3458999999987665555555444
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
-
T Consensus 104 ~ 104 (286)
T PHA03042 104 Y 104 (286)
T ss_pred E
Confidence 3
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.18 Score=37.27 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=42.1
Q ss_pred eEEeeCCCeEEEEeecCCCC--C-CeEEEEE--CCEE--e---c--------CCCcEEEeeCC-----CEEEcCCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--K-PKFVWKK--DGNI--I---G--------SGGRRKIFENG-----NLLISPVSRDDS 154 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~-~~i~W~~--~g~~--~---~--------~~~~~~~~~~~-----~l~i~~v~~~d~ 154 (505)
...+..|+.++|.|.+.|.. . -.+.|.| +|.. + . ...++....+. +|+|.+++.+|.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 35677889999999987653 3 4788987 3310 0 0 11222222111 499999999999
Q ss_pred EEEEEEE
Q psy14886 155 GIYSCTA 161 (505)
Q Consensus 155 G~y~C~~ 161 (505)
+.|.|..
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999975
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >KOG4367|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.027 Score=50.60 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=61.7
Q ss_pred eCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcC
Q psy14886 291 HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370 (505)
Q Consensus 291 ~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~ 370 (505)
...++++.|+.|...+.+..+|.++......+.+..+.. +..+...+.+|.-++.|.-||.|.|+.|.+
T Consensus 451 ~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~-----------g~etmctvdglhfns~y~arvka~n~tg~s 519 (699)
T KOG4367|consen 451 HNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYV-----------GKETMCTVDGLHFNSTYNARVKAFNKTGVS 519 (699)
T ss_pred cCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEe-----------cCceeEEecceecchhHHHHHHHhhccCCC
Confidence 567899999988777888999999988776665555433 444555566699999999999999999999
Q ss_pred CCCCCCCCccC
Q psy14886 371 EPSSPSPQYNT 381 (505)
Q Consensus 371 ~~s~~~~~~~t 381 (505)
+.|... ..+|
T Consensus 520 ~ys~tl-~lqt 529 (699)
T KOG4367|consen 520 PYSKTL-VLQT 529 (699)
T ss_pred ccccee-Eeee
Confidence 988764 3344
|
|
| >KOG4228|consensus | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.19 Score=51.82 Aligned_cols=202 Identities=19% Similarity=0.123 Sum_probs=116.4
Q ss_pred EEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccc
Q psy14886 255 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334 (505)
Q Consensus 255 ~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~ 334 (505)
.|+|.+....|.......+.|..-|..+....++......+.+.|..+.. ....|.+.++...+. .........
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~~~~~~-- 74 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYIDVDLT-- 74 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-cceeeccce--
Confidence 38999988888888888888877777777777778888889999986543 455666666655443 211111110
Q ss_pred eeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCC---------------------------------------
Q psy14886 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--------------------------------------- 375 (505)
Q Consensus 335 ~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~--------------------------------------- 375 (505)
...-...+.+.+.+.+ .+.|..|.+.++.+
T Consensus 75 ---------~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (1087)
T KOG4228|consen 75 ---------TRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVG 143 (1087)
T ss_pred ---------eecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCccccccccc
Confidence 0000111223333333 44444444433221
Q ss_pred --------------CCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeee
Q psy14886 376 --------------SPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 441 (505)
Q Consensus 376 --------------~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~ 441 (505)
...+.+....|.+++ ...+.+.+++.|.++ ....+..|++.+...+...........
T Consensus 144 ~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~----~~~~~~~ykl~~~~~d~~~~~~v~~~~ 214 (1087)
T KOG4228|consen 144 PLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPP----HAVSLDTYKLLHLDPDTGYEISVTLTP 214 (1087)
T ss_pred ccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCC----CcccchhhhhhhcCCcccceeeeeccC
Confidence 112333333333322 334567889999773 334477888877766544333333332
Q ss_pred cCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 442 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 442 ~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
. ......++.|...|.++..+....+.+.....+.+++...
T Consensus 215 ~-----~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~~s 255 (1087)
T KOG4228|consen 215 P-----GSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQLQS 255 (1087)
T ss_pred C-----CCCcccCCCCcccccccccCccccccCCCCcceEEEehhh
Confidence 2 2334456777888888888888888887777777766543
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.44 Score=42.98 Aligned_cols=121 Identities=17% Similarity=0.287 Sum_probs=72.3
Q ss_pred CCCCCceEEEEEEe--ccC-CCeEEEEECCEECcCC----------CCCCCCCCcEEE----------ECCeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAF--GVP-DVTYSWFRNGELLNSE----------TLPLEDQDRYFI----------QDNVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~--~~p-~~~~~W~~~~~~l~~~----------~~~~~~~~~~~~----------~~~~L~i~~~~~ 57 (505)
++.|..+.|.|.++ |+. -...+|+.-|-++..- .........+.+ ..++|+|.++.
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~- 354 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH- 354 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE-
Confidence 46799999999996 333 4678999866544311 011111122222 24799999999
Q ss_pred CCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCC-eEEEEeecCCC--CCCeEEEEECCEEec
Q psy14886 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG-NVTIFCNPEAA--PKPKFVWKKDGNIIG 131 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~-~v~l~C~~~~~--p~~~i~W~~~g~~~~ 131 (505)
.+.+|-|+|.|....-..+....+.|... ..+ ....+|+ .-...|-+... .++.|.|..+|....
T Consensus 355 I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-V~f--------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 355 INNAGCYEAQAFMGKFKEECRHCFKVADH-VFF--------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEcCCceEEEEecCcchhhhhhheEeccE-EEE--------EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999865333333334444320 000 1122333 34567887554 345799999886553
|
|
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=4.4 Score=36.92 Aligned_cols=124 Identities=16% Similarity=0.244 Sum_probs=69.7
Q ss_pred ceEEEeeccEEEEEEeeecC-CCCeEEEEEeCCEEecCC------------CCCcccCCe--------eeecCCeEEEec
Q psy14886 189 KITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNM------------DLNELETPN--------INIDGGLLEITN 247 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~------------~~~~~~~~~--------~~~~~~~l~i~~ 247 (505)
...+..|..+.|.|...--. ..--...|...|.++.+. +........ .....++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 45667799999999876411 111234587766554421 111111111 112357899999
Q ss_pred CCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEE-EeCCCCCeEE
Q psy14886 248 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA-RTNWNSTWFN 326 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~-~~~~~~~w~~ 326 (505)
+.-...|=|.|.|....-.....-.|.| .+.|.+.|.--...-..+.-|..++ ....+..|..
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V----------------~d~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkv 416 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKV----------------ADHVFFKWNTEGDNETKVACYAAQYDMQPFSILWKS 416 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEe----------------ccEEEEEEEeccCceEEEEEEEEecccCCceeEEEE
Confidence 9989999999998765333333333333 3578888973322223344455566 3333466766
Q ss_pred ee
Q psy14886 327 VS 328 (505)
Q Consensus 327 ~~ 328 (505)
..
T Consensus 417 nG 418 (500)
T PHA02914 417 NG 418 (500)
T ss_pred cc
Confidence 43
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.6 Score=35.75 Aligned_cols=115 Identities=15% Similarity=0.283 Sum_probs=66.6
Q ss_pred EEeeCCCeEEEEeecCCCC-CCeEEEEECC-EEecC--C----------------CcEEE---eeCCCEEEcCCCCCCCE
Q psy14886 99 TYAGEGGNVTIFCNPEAAP-KPKFVWKKDG-NIIGS--G----------------GRRKI---FENGNLLISPVSRDDSG 155 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g-~~~~~--~----------------~~~~~---~~~~~l~i~~v~~~d~G 155 (505)
+....++.|.|.|...... -....|.++. ..+.. . ..+.. ...++|+|.++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 4456799999999853332 2378898743 33321 0 00111 12346999999999999
Q ss_pred EEEEEEEcCCCceee-eEEEEEEeCCeeeeeCCCceEEEee-ccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 156 IYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
-|+|.+....+..+. .--|.|+...... ....+ ....+.|-+-....+-+ .|.-.|..
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp--~W~V~GVv 173 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVP--RFIVAGIV 173 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCc--cEEEeeEE
Confidence 999999986654443 4445552221111 11223 34567887766544322 58777654
|
|
| >PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.7 Score=38.51 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred eeEEEEcCCccceeeEEEEEEEecCCC
Q psy14886 446 GIAVVRIPSEFYYTEYEVKVQAINDVG 472 (505)
Q Consensus 446 ~~~~~~l~~L~p~~~Y~~~v~a~n~~G 472 (505)
....+.|+++.||..|.+++.+.|...
T Consensus 126 ~~~~f~l~~~~~g~~Yliri~~~~~~e 152 (300)
T PF10179_consen 126 GLRHFRLSGVKPGERYLIRIQISNSDE 152 (300)
T ss_pred ceEEEEECCCCCCCeEEEEEEccCCCC
Confidence 456788999999999999999887544
|
The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness. |
| >COG3401 Fibronectin type 3 domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.99 Score=40.05 Aligned_cols=162 Identities=11% Similarity=-0.009 Sum_probs=93.2
Q ss_pred eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCC
Q psy14886 294 SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373 (505)
Q Consensus 294 ~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s 373 (505)
.+.+-|.+.. +-++-.|.|+....+.. ..+...-.. +...-.+..++.++..|++++.+.+..+.-+.+
T Consensus 85 ~~~~~w~~~~--d~~~~~Y~i~~~~gD~~-f~r~~~~~n--------~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs 153 (343)
T COG3401 85 SVKVFWSPHP--DVSVGKYIIQRQNGDGK-FLRTGLVKN--------RLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS 153 (343)
T ss_pred eeeecccccC--CCCCCeEEEEEecCchh-hhhhhHHHh--------ccchhheecccccccceeeeEEeecccccceee
Confidence 4788998643 34456788876654433 333222221 222334455699999999999999888776555
Q ss_pred CCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcC
Q psy14886 374 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453 (505)
Q Consensus 374 ~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 453 (505)
.. .+...+...|..-.++++.....+.+.|+|+.++. +-.|+|.-...+..+.. .......|. ......
T Consensus 154 f~--gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~------~~yy~IY~~~~g~e~~~-~ia~t~~n~--y~d~~e 222 (343)
T COG3401 154 FT--GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA------EDYYRIYASDSGNEEYG-FIAQTTENS--YYDVKE 222 (343)
T ss_pred ee--eeecccccCCceeeeeeeecCCCCcceeeccCccc------cceEEEeccCCcccccc-ceeeccccc--hhhhhh
Confidence 32 33333443333445566667778899999987333 22677755444433322 222221211 122233
Q ss_pred CccceeeEEEEEEEec-CCCCCCCCce
Q psy14886 454 SEFYYTEYEVKVQAIN-DVGPGPESEV 479 (505)
Q Consensus 454 ~L~p~~~Y~~~v~a~n-~~G~g~~s~~ 479 (505)
+| |..|...|.++. ..+.|+.++.
T Consensus 223 gl--ga~~~y~VTtVd~~~~es~lp~~ 247 (343)
T COG3401 223 GL--GAVEYYKVTTVDNTGFESDLPNE 247 (343)
T ss_pred cc--CceeEEEEEEEcCCcceeccCCc
Confidence 34 677777788876 4556777763
|
|
| >PLN02533 probable purple acid phosphatase | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.6 Score=41.65 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeee--------cCceeeEEEEcCCcc
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE--------YGNVGIAVVRIPSEF 456 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~L~ 456 (505)
..+..|..+++.-...+++.|+|... .. .. =.|+|....+..+....... ..........|++|+
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~--~~-~~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~ 111 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQ--DS-IP----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLK 111 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECC--CC-CC----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCC
Confidence 44557888888766688999999872 22 11 24667654422222111110 112234566899999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|+|.|..+|- ....|+...++|.|.
T Consensus 112 p~T~Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 112 PNTVYYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred CCCEEEEEEC------CCCCccceEEECCCC
Confidence 9999999983 223477788888764
|
|
| >KOG4802|consensus | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.12 Score=46.61 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCceeee-eccccccEEEEEEeCCccccCCCCceEEEEEE------------EcCCCCcEEEEeeecCceeeEEEEcCCc
Q psy14886 389 APSRIGG-GGGKIGDLSISWEPLPREKQNAPNIYYKIFWR------------KKNDTEFQSETLKEYGNVGIAVVRIPSE 455 (505)
Q Consensus 389 ~P~~~~~-~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~L 455 (505)
+|++... .....+++.+.|.. ... +.-|.+.+. +.+.-.|+.+..... ...+.+.++
T Consensus 147 ~Pr~k~~y~r~~~g~~av~w~~--~~~----~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~----e~~~~~t~~ 216 (516)
T KOG4802|consen 147 PPRPKILYFRRSRGSHAVDWKI--ESS----LLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTME----ENTYIFTDM 216 (516)
T ss_pred CCcchhhhhhhccCceeeeeee--ccc----cceeeeehhhhhhhcccccccccccccceeeeecCC----Cceeeeeec
Confidence 4544443 34456778899976 221 222222221 122445665555542 246788889
Q ss_pred cceeeEEEEEEEecCCCC---CCCCceEEE
Q psy14886 456 FYYTEYEVKVQAINDVGP---GPESEVVTI 482 (505)
Q Consensus 456 ~p~~~Y~~~v~a~n~~G~---g~~s~~~~~ 482 (505)
.||..|+|||.|+|..|. +.+|+...-
T Consensus 217 rPgRwyefrvaavn~~G~rGFs~PSkpf~s 246 (516)
T KOG4802|consen 217 RPGRWYEFRVAAVNAYGFRGFSEPSKPFPS 246 (516)
T ss_pred CcceeEEEEEeeeecccccccCCCCCCCCC
Confidence 999999999999999864 555555443
|
|
| >KOG3632|consensus | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.83 Score=46.41 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
...+..|..+++..+...+..++|-+-..... .+.|-...+-. . .......+++.+ |.|++
T Consensus 669 g~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~-----Hviyln~eE~~--p-----------s~a~~y~ytf~~-lrpgt 729 (1335)
T KOG3632|consen 669 GAAPVVPSQLRVWNATQTSAMITWVPFNSNFL-----HVIYLNAEEPR--P-----------SVAEMYNYTFMR-LRPGT 729 (1335)
T ss_pred ccccccchhhhhhhhhchhhheeeeecCCCcc-----eeeecCCccCC--C-----------chhhhhHHHHhc-cCCCC
Confidence 45677888999999999999999985432211 11111110000 0 001223445555 99999
Q ss_pred eeEEEEEEEcC-CCcCCC-------CCCCCCccCCCCCCCCCCceeeee-ccccccEEEEEEeCCcccc----CCCCceE
Q psy14886 356 TYEFKVIAGNE-LGYGEP-------SSPSPQYNTPADKPYQAPSRIGGG-GGKIGDLSISWEPLPREKQ----NAPNIYY 422 (505)
Q Consensus 356 ~y~~~v~a~n~-~G~~~~-------s~~~~~~~t~~~~p~~~P~~~~~~-~~~~~~v~l~W~~~~~~~~----~~~i~~Y 422 (505)
.|..+|.+.-. .+.+.. -...+.+.|.++.|+.||..+.+. ..+...+.++|.|+-.+.. +..+++|
T Consensus 730 ~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgY 809 (1335)
T KOG3632|consen 730 DYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGY 809 (1335)
T ss_pred ccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeee
Confidence 99999998665 332211 112246788899999999999996 5577899999998544332 2367889
Q ss_pred EEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc-eeeEEEEEEEecCCCCC
Q psy14886 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAINDVGPG 474 (505)
Q Consensus 423 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~~~Y~~~v~a~n~~G~g 474 (505)
.|.-. + .... .. .. .....+.+.+.-|+- ...=.|.|+.....|.+
T Consensus 810 avyad--g-qkv~-Ev-af-ptagst~VelsQlq~~l~~~~V~vRtms~~ges 856 (1335)
T KOG3632|consen 810 AVYAD--G-QKVE-EV-AF-PTAGSTKVELSQLQDGLYHGAVGVRTMSVPGES 856 (1335)
T ss_pred eeeeC--C-ceee-ee-ec-ccCCceEEEeeeehhhheecceeEEecccCccc
Confidence 88643 1 1111 11 11 122334444444443 45556667666666765
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.41 E-value=2.1 Score=31.01 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=46.4
Q ss_pred EEEEEEeeecCCCCe--EEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE-EEEEEE
Q psy14886 198 LQLRCSAHTEELLDV--AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS-TKTTVI 274 (505)
Q Consensus 198 ~~l~C~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~ 274 (505)
..+.|...-...+.. -+.|..+....... .......+...+-.|.|..++..|+|.|...+++..|... ..+.+.
T Consensus 28 ~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~--~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 28 YSVQWKMQLPSQKKFEVILTWKNDSTPSYNS--SFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp EEEEEEEEETSSSEEE-EEEEETTEEEESST--THHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEEEEEEcccCCceEEEEEEcCCCcccccc--cccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 345665554333333 36676544443321 1122345556678999999999999999999999999863 445555
Q ss_pred E
Q psy14886 275 V 275 (505)
Q Consensus 275 v 275 (505)
|
T Consensus 106 V 106 (108)
T PF11465_consen 106 V 106 (108)
T ss_dssp E
T ss_pred e
Confidence 4
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.54 Score=33.91 Aligned_cols=37 Identities=35% Similarity=0.401 Sum_probs=27.7
Q ss_pred CCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEE
Q psy14886 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVL 177 (505)
Q Consensus 141 ~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~ 177 (505)
+-+|.|+.++..|+|.|.-.+.+..|..... +.+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 4579999999999999999999988877443 555543
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.31 Score=45.00 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=59.9
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEE---CCEEecCC-----CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~---~g~~~~~~-----~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
-.+..+++..++|.+.|.+.+.|+|.+ |+..+... .+....+...|.|-+....|+|.|+|.+.+..|....
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence 457789999999999999999999986 33332211 1122223345999999999999999999999998888
Q ss_pred eEEEEEEe
Q psy14886 171 KGRLIVLH 178 (505)
Q Consensus 171 ~~~l~v~~ 178 (505)
.+.+.+..
T Consensus 286 dv~c~s~~ 293 (560)
T KOG4597|consen 286 DVPCSSVK 293 (560)
T ss_pred cceeeeec
Confidence 87766643
|
|
| >PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=91.61 E-value=4 Score=29.65 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=52.8
Q ss_pred CceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecC--ceeeEEEEcCCc--cceeeEEEEE
Q psy14886 390 PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG--NVGIAVVRIPSE--FYYTEYEVKV 465 (505)
Q Consensus 390 P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L--~p~~~Y~~~v 465 (505)
|.++.-.-.+...+.-+|++ . ....+-+.|.|.|+.........-..-... ....+.+..... .....|.|.|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~--g-~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEP--G-KEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp -EEEEEEEETTTEEEEEEEC--C-TTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECC--C-CCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 45666555568899999997 2 223346799999999763332221111112 234456666555 2346899999
Q ss_pred EEecCCCCCCCC
Q psy14886 466 QAINDVGPGPES 477 (505)
Q Consensus 466 ~a~n~~G~g~~s 477 (505)
.+.+..|.-.+.
T Consensus 79 ~~ss~~~~i~~~ 90 (99)
T PF09240_consen 79 NGSSSAGSIRSS 90 (99)
T ss_dssp EEEETTEEEECE
T ss_pred EeccCCCccCCc
Confidence 999998875444
|
They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C .... |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=91.41 E-value=2.9 Score=44.31 Aligned_cols=182 Identities=20% Similarity=0.160 Sum_probs=100.8
Q ss_pred EcCCCCCCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 275 v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
...++.+|.+-....+...-+...|..+.. ++..+..|.+..+..+...|........ ....+.. ..
T Consensus 136 ~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~----------~~s~~~~-a~- 203 (1205)
T KOG0613|consen 136 QEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPT----------DDSTDTD-AH- 203 (1205)
T ss_pred hcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCccccccccc----------CCcceec-cc-
Confidence 344555666555566677788889988774 4566688999988888877776543322 1111111 22
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEE-cCCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK-KNDT 432 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~-~~~~ 432 (505)
|+++++++-..|...+-... .+.-....+...|....+......-+.+.|..+ ..+.--.+.+|.++-.. .+..
T Consensus 204 ---~e~~v~~v~s~gqp~~~~~~-~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~-~G~~~~~~~~~l~e~~~~~~~~ 278 (1205)
T KOG0613|consen 204 ---YESRVRAVVSAGQPEPLERW-EILGELIAPGSAPSMSVTLEASDRKIQLTLRAP-RGPYSAHILGYLIEQRKHKGGN 278 (1205)
T ss_pred ---cceeEEEEEecCCCccchhh-hhcccccCCCCccccccccchhheeeeEEeecC-CCchHHHHhcchhhhcccCCCc
Confidence 55555555555554432221 222223344445554444555667788888763 22333355677776665 3344
Q ss_pred CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
.|....-........+...- .++-.|.+++...=..|.+.+
T Consensus 279 t~~i~~~~~~~~~s~t~~~~---~~~~q~~~~v~~~~~i~~~~~ 319 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADK---RQGCQDRFKVTEEAPIGKGKP 319 (1205)
T ss_pred cccccccCCccccceeeecc---cCCcccceeeeEEeecccccc
Confidence 44433322222223333333 347888888888888887543
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.16 Score=47.33 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=31.0
Q ss_pred CCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 453 ~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.+|.+|+.|.|||.|.|..|.|++|++..+.|.-
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~ 685 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA 685 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeecc
Confidence 4588999999999999999999999999998853
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.1 Score=40.21 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.5
Q ss_pred ceEEEEEEec-cC-CCeEEEEEC
Q psy14886 6 DLTWTCEAFG-VP-DVTYSWFRN 26 (505)
Q Consensus 6 ~~~l~C~~~~-~p-~~~~~W~~~ 26 (505)
.++|.|.|.| +| ...++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999998 56 588999999
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=89.29 E-value=2.2 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.437 Sum_probs=39.2
Q ss_pred EEeeCCCeEEEEeecCCC-----CCCeEEEEECCEEecCCCcEEEeeCC--CEEEcCCCCCCCEEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~--~l~i~~v~~~d~G~y~C~~ 161 (505)
..+..|++++..|..... ....|.|..++..+.. .++....++ .+++.+......-.|-|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 458899999999997533 3458999999986544 455554444 4666666555555666663
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.5 Score=28.88 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=29.4
Q ss_pred EEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 422 YKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 422 Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
...+|+..+ +.+|....... ..+.+++|.|| .|.|.|+|.+..|.-...
T Consensus 8 ~~Y~Y~l~g~d~~W~~~~~~~------~~~~~~~L~~G-~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 8 IRYRYRLEGFDDEWITLGSYS------NSISYTNLPPG-KYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEEEEETTESSEEEESSTS-------EEEEES--SE-EEEEEEEEEETTS-B-SS
T ss_pred eEEEEEEECCCCeEEECCCCc------EEEEEEeCCCE-EEEEEEEEECCCCCcCcc
Confidence 344555554 56777433221 16677888875 899999999998875544
|
However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=89.14 E-value=5.5 Score=27.50 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=37.4
Q ss_pred EEEEEEecc-----C--CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEE-EcccCceEeeE
Q psy14886 8 TWTCEAFGV-----P--DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA-KNQLKTRYSSA 79 (505)
Q Consensus 8 ~l~C~~~~~-----p--~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~-~~~~~~~~~~~ 79 (505)
.|.|..-+. | .+.+.|.-.+..+ ....+.+...... ..|+|.+.|.| .+.........
T Consensus 9 ~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~-------------~~~~~~~~~~~~~-~~d~G~w~C~a~~~~~k~~~s~~ 74 (80)
T PF05790_consen 9 VLPCEVLELTLEKPPGMKPSLFLENPGKKS-------------LETKKLVSTFTPT-TEDSGTWVCTASDNEPKERESKI 74 (80)
T ss_dssp EEEEEEESECEEETTTECEEEEEECSSCEE-------------EEESSEEEEESBT-CGGSEEEEEEEEECTTEEEEEEE
T ss_pred EeeeeeEEEEEcCCCCCChhheeeccCccc-------------cccceEEEEecCC-CCCCEEEEEEEcCCceEEEEEEE
Confidence 566766332 2 4666776554322 2345667777777 89999999999 44443344444
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.+.|
T Consensus 75 ~i~v 78 (80)
T PF05790_consen 75 EILV 78 (80)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >COG4733 Phage-related protein, tail component [Function unknown] | Back alignment and domain information |
|---|
Probab=88.77 E-value=9.4 Score=38.74 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=62.8
Q ss_pred eeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccC-CCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCce
Q psy14886 343 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 421 (505)
Q Consensus 343 ~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t-~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~ 421 (505)
..+-+.+ +.+ ..|..+|+|.|..|....-..+..+.. .+..|+..+.-+... ...-.+.+.|=- |--.
T Consensus 660 ~~~~~~g-i~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~-~it~~~~l~v~d--------Pt~~ 728 (952)
T COG4733 660 AGFDVEG-IPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAV-IITLVIRLVVGD--------PTGA 728 (952)
T ss_pred cceeecC-cCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceE-EEEeeeeEEEec--------CCcc
Confidence 3444555 655 799999999999998754432223322 223332222111111 112345555543 2233
Q ss_pred EEEEEEEc-----CCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCc
Q psy14886 422 YKIFWRKK-----NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478 (505)
Q Consensus 422 Y~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~ 478 (505)
|.+.+.+. .+.+......-... ...... .+|.|+..|.|+++++|..|.+.+-+
T Consensus 729 ~d~~~sei~~s~~~d~~~~Ar~LG~~~--~~~~~~-~~i~~g~~~~F~~R~Vn~vG~~~~~e 787 (952)
T COG4733 729 VDITSTEIRSAVIADGNFQARSLGNLN--YPGLFS-VGIQAGLTFWFRNRNVDLVGNNDKWE 787 (952)
T ss_pred eEEeeeeeeeeccccchhHHhhhhccc--cccccc-cCcCCCceEEEEeeecccccccccce
Confidence 44444332 22222111111100 111112 57889999999999999999976655
|
|
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.2 Score=29.50 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 118 KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 118 ~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
.+.+.|+..+..+.. ....+.+......|+|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~~~-------~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLE-------TKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEE-------ESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccccc-------cceEEEEecCCCCCCEEEEEEEc
Confidence 457777765543322 12235566777899999999994
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.3 Score=30.51 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=40.4
Q ss_pred eEEEEEeCCeEEEEeecCC-----CCC-------CCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 285 VQVVEVHKTSATIQWTDGA-----TNG-------RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 285 ~~~~~~~~~~v~l~w~~~~-----~~~-------~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
+.+ ...+..+.+.+.+|. ... .+-..|.|.+...++..-.... ........+.+|.
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~-----------~~~~~~~~l~~L~ 75 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEI-----------ETKNSSVTLSDLK 75 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEE-----------ESSSEEEEEES--
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEE-----------eecCCEEEEeCCC
Confidence 555 677888999998875 111 1124688988877665211111 1233443444599
Q ss_pred CCceeEEEEEE
Q psy14886 353 PWSTYEFKVIA 363 (505)
Q Consensus 353 ~~~~y~~~v~a 363 (505)
|++.|-++|.+
T Consensus 76 p~t~YCv~V~~ 86 (106)
T PF09294_consen 76 PGTNYCVSVQA 86 (106)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 99999999999
|
They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T .... |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=2.4 Score=27.57 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=24.9
Q ss_pred CCCCCceEEEEEEe-ccC--CCeEEEEECCEECc
Q psy14886 1 MDNQADLTWTCEAF-GVP--DVTYSWFRNGELLN 31 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p--~~~~~W~~~~~~l~ 31 (505)
++-|+.++|.|.+. +.+ .+.+.|.-|+..+.
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 35699999999995 333 68899999999884
|
|
| >PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.66 Score=44.91 Aligned_cols=312 Identities=17% Similarity=0.195 Sum_probs=23.1
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeE--EEEEEE-cccCc--eEeeEE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM--YQCRAK-NQLKT--RYSSAQ 80 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~--Y~C~~~-~~~~~--~~~~~~ 80 (505)
.+.|.|.. .-...+.|..-..+....... ... ......|.|.... . ..|. |...+. ..... ....+.
T Consensus 2 ~~~~~C~~--~~~~~y~W~~~~~~~~~~~~~--~~~--~~~~~~l~ip~~~-L-~~G~y~~~~~Vt~~~~~~~~~~~~~~ 73 (440)
T PF02010_consen 2 HVSLNCND--ASTVTYNWTVFSGPSNSIVQD--MDN--SSNTPQLTIPPYT-L-PPGDYTFTLTVTASSNPGLSSTDSVT 73 (440)
T ss_dssp ----------------BEEEEES-TT-EEES--TTT----SSSECEEECES----SCEEEEEEEEE--BCTTEEEEEEEE
T ss_pred Cccccccc--ccceEEEEEEEecCCcCcccc--ccc--cCCceEEEeCccc-C-CCCCEEEEEEEEEECCCCceEEEEEE
Confidence 46788943 235788998732211100000 000 2234578887766 4 3444 455555 22222 233455
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-------CCeEEEEECCEEecCC-------CcEEEeeCCCEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-------KPKFVWKKDGNIIGSG-------GRRKIFENGNLLI 146 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-------~~~i~W~~~g~~~~~~-------~~~~~~~~~~l~i 146 (505)
+.|...+....+.. .....+..++.+.|.....-.| ...+.|......-... ..........+.|
T Consensus 74 v~V~~s~l~~~I~g-G~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i 152 (440)
T PF02010_consen 74 VTVEPSPLVAVIKG-GSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTI 152 (440)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEeeccceeEEcC-CccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEE
Confidence 66654222222211 1222333445677776433223 2367787643222100 0011112334666
Q ss_pred cCCCCCCCEEEEE--EEEcCCC-ceeeeEEEEEEe--CCeeeeeCCC--ceEEEeeccEEEEEEeeecC--CCCeEEEEE
Q psy14886 147 SPVSRDDSGIYSC--TATNVHG-MDESKGRLIVLH--GPSYYEQLPP--KITIAAHRNLQLRCSAHTEE--LLDVAYIWT 217 (505)
Q Consensus 147 ~~v~~~d~G~y~C--~~~~~~g-~~~~~~~l~v~~--~p~~~~~~~~--~~~~~~g~~~~l~C~~~~~~--~~~~~~~w~ 217 (505)
..........|.- .+....+ .......+.+.. +|........ ...+..++.+.|.-.....+ ...+.+.|.
T Consensus 153 ~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Ws 232 (440)
T PF02010_consen 153 PASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWS 232 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEE
Confidence 4333322222544 4444433 222233344432 2222111111 11255666666654444322 334567787
Q ss_pred e---CCEEecCCCCCcc-cCCeeeecCCeEEEecCCCCCCEEEE--EEEEecCCcE-EEEEEEEEcCCCCCCCceEEEEE
Q psy14886 218 H---NGVRIGNMDLNEL-ETPNINIDGGLLEITNASFADAGEYE--CVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEV 290 (505)
Q Consensus 218 ~---~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~--C~~~n~~g~~-~~~~~l~v~~~p~~p~~~~~~~~ 290 (505)
. .+........... ...........|.|..-.......|. +.+.+..+.. ...+.+.+..+|.. ..+.+...
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~-g~c~v~P~ 311 (440)
T PF02010_consen 233 LFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSG-GSCSVSPS 311 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Eeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 6 0000000000000 00111223345666544444444554 5555554443 56667777666542 23333222
Q ss_pred ----eCCeEEEEeecCCCCCCCCceEEEEE-EeCCCCCeEEee
Q psy14886 291 ----HKTSATIQWTDGATNGRPITHYKIIA-RTNWNSTWFNVS 328 (505)
Q Consensus 291 ----~~~~v~l~w~~~~~~~~~i~~y~v~~-~~~~~~~w~~~~ 328 (505)
-.+..++.|.-..+.+. .+.|.+.+ .......|..+.
T Consensus 312 ~G~al~T~Ft~~c~~~~d~~~-pL~Y~f~~~~~~~~~~~~~L~ 353 (440)
T PF02010_consen 312 SGYALETTFTITCSGWTDDDQ-PLTYQFYYSSDDGSGSWNLLY 353 (440)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 22456677765544444 45688777 333344454443
|
The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A. |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=28 Score=32.73 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEEEEEec----CCCcc--CCCCC----------ceEEeeCCCeEEE
Q psy14886 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTL----KPSFK--KRPLE----------SETYAGEGGNVTI 109 (505)
Q Consensus 47 ~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~----~p~~~--~~~~~----------~~~~v~~g~~v~l 109 (505)
.+.|.|.+++ ..++|.|+-..+|..+.... .+.|.|... +|... +.+.. .......|+++.+
T Consensus 126 ~~~L~I~nAt-~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 126 GKELTILNAS-SQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCceEEeecc-ccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 3679999999 99999999999987666544 455666422 22222 22211 1234678999877
Q ss_pred EeecCC--CC---CCeEEEEE
Q psy14886 110 FCNPEA--AP---KPKFVWKK 125 (505)
Q Consensus 110 ~C~~~~--~p---~~~i~W~~ 125 (505)
.-.... .. ..++.|+.
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEeecccCCCceEEEEEEE
Confidence 765431 11 34889965
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=85.81 E-value=0.66 Score=32.81 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=36.4
Q ss_pred CCCCCceEEEEEEec-----cCCCeEEEEECCEECcCCCCCCCCCCcEEE-EC--CeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-----VPDVTYSWFRNGELLNSETLPLEDQDRYFI-QD--NVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
|..|+.++..|.+.. ..+..+.|..|+..++. .++.. .+ +++.+.+.. ...+-.|.|..
T Consensus 15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~--------~qy~~in~~~SsVT~~~~~-~~~~~L~cC~l 81 (89)
T PF06328_consen 15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG--------SQYRVINDTVSSVTLPNLN-PTGATLFCCKL 81 (89)
T ss_dssp EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC--------GCEEEESTTEEEEEESS---SSEEEEEEEEE
T ss_pred EeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh--------hHcceeCCeEEEEEEccCC-CCCceEEEEEE
Confidence 457999999999953 24678999999987763 34443 22 456666665 44444667764
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=84.61 E-value=23 Score=29.75 Aligned_cols=138 Identities=17% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCeEEEEECCEECcCCCCCC----CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCC
Q psy14886 18 DVTYSWFRNGELLNSETLPL----EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 93 (505)
Q Consensus 18 ~~~~~W~~~~~~l~~~~~~~----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~ 93 (505)
...+.|+.||.++....... ...+ ....-++|.+......+..=..+|.+.-.......+.. .-. ..|..-..
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G-~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~-~a~-~~P~Vy~~ 82 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDG-LFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF-NAT-ATPSVYPK 82 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCC-cEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe-ecc-cccceecC
Confidence 46789999999887331100 0001 11112455552222144455789998743332211111 111 11221111
Q ss_pred CCCceEEeeCCCeEEEEeecCCCC--CCeEEEEECCEEecCCCcEEEee-----CCCEEEcCCC--CCCCE--EEEEEEE
Q psy14886 94 PLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVS--RDDSG--IYSCTAT 162 (505)
Q Consensus 94 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g~~~~~~~~~~~~~-----~~~l~i~~v~--~~d~G--~y~C~~~ 162 (505)
| .-.+.+..|. ..|.+.--| ...+.|.-++............. .+...|.+.. ....| .|+|.+.
T Consensus 83 P-~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 83 P-RVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred C-EEEEEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 1 1112233443 346654444 25899998776532221111111 1223333322 23445 8999986
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.6 Score=42.19 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=0.0
Q ss_pred eccCCceeEEEEEEEcCCCcCC
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
-|.++..|.|++.+.+..+...
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~~ 289 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSSG 289 (440)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3889999999999998877653
|
The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A. |
| >PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: |
Back alignment and domain information |
|---|
Probab=84.07 E-value=11 Score=36.57 Aligned_cols=48 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred eEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc------eEEEEEEEeCc
Q psy14886 447 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP------LVIISYVCQGD 497 (505)
Q Consensus 447 ~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p------~~~~~~~~~~~ 497 (505)
...+.|++|.|++.|..++.+. +.+..|..-.++|.| -.+.-.+|.+.
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~~---~~~~~s~~g~~rT~p~~~~~~~r~a~~SC~~~ 116 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVVD---GGGQTSPVGRFRTAPDGDPDPFRFAFGSCQNY 116 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE-----TTEE---EEEE--TT-----EEEEEE----C
T ss_pred EeecccCCCCCCceEEEEEEEe---cCCCCCCceEEEcCCCCCCCceEEEEECCCCc
Confidence 4567899999999999999992 235556666777764 45677888764
|
|
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=83.99 E-value=4.3 Score=41.07 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+..|..+++.|...+.|.+...|+.++......... ..+.. +.. .-.-++.|.+.|..+.....+.
T Consensus 204 v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~-----------~~~c~-~~~--~~~~~~~c~~E~~~~~~~~~v~ 269 (774)
T KOG1026|consen 204 VEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQT-----------SSLCR-SEC--EVLENDLCIAENAVARSNPSIL 269 (774)
T ss_pred hcccchheeeeecccCCCcceeeecccccccCCCcc-----------ccccc-ccc--eeeechhhHHHHhhhhcCceee
Confidence 467899999999999999999999987655432110 01111 111 1111289998888887777777
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEee---cCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCC
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCN---PEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDS 154 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~---~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~ 154 (505)
+.+.............+. .-.|. +.+.+.+...|-.++..+...+....... +-+....-+..+.
T Consensus 270 ~~~~~p~~~~~~~~~~~~---------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~ 340 (774)
T KOG1026|consen 270 LVVDLPKAEVLLCSPLSD---------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHN 340 (774)
T ss_pred eEEecccccccCCCCccc---------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCccccc
Confidence 666642222222211111 12233 23456667788887765442221111111 2233333356788
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
|.|+|.+.+..|.........+...|
T Consensus 341 ~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 341 GNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred CcceeeecccCccccccCcCccccCC
Confidence 99999999887776655444443333
|
|
| >COG3401 Fibronectin type 3 domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.10 E-value=35 Score=30.77 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=94.8
Q ss_pred CCCEEEEEEEEecCCcEEEEEEEEE-cCCCCCC--CceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEe
Q psy14886 251 ADAGEYECVVKSTVGKISTKTTVIV-EGPPGLP--GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327 (505)
Q Consensus 251 ~~~g~y~C~~~n~~g~~~~~~~l~v-~~~p~~p--~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~ 327 (505)
.....|...+.+..+..+-++...- ...-.|+ ..+++....++++.|+|+-+.. ...|.++....+.......
T Consensus 134 ~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~----~~yy~IY~~~~g~e~~~~i 209 (343)
T COG3401 134 NEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA----EDYYRIYASDSGNEEYGFI 209 (343)
T ss_pred ccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccc----cceEEEeccCCccccccce
Confidence 3344556666666555444433221 1111222 3344555567889999974332 2267777655544433332
Q ss_pred eeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCc-CCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEE
Q psy14886 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY-GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 406 (505)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~-~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~ 406 (505)
..... ..+.......+..|.|.+.+.-..|. +..+.....-.+ .+.+. .|. +.......+.+.|.
T Consensus 210 a~t~~-----------n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~-~g~~e-~pt-~~g~t~~~s~i~V~ 275 (343)
T COG3401 210 AQTTE-----------NSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGET-GGRYE-VPT-IPGETTEASFIGVA 275 (343)
T ss_pred eeccc-----------cchhhhhhccCceeEEEEEEEcCCcceeccCCccccccc-cCCcc-ccc-CCCceeeeeeeeEE
Confidence 22111 11111113337778888887665544 433332211111 12221 111 11112234556788
Q ss_pred EEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCC
Q psy14886 407 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 475 (505)
Q Consensus 407 W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~ 475 (505)
|+.- +.. ....|.+.--..+... .... ...+...+..+.++..|.+.|.|++.+|.+.
T Consensus 276 ~E~~-~~~---~av~ytvyr~~~g~~~-~~f~------it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 276 AEQN-QLR---QAVTYTVYRVEDGTPT-KFFT------ITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred eccc-ccc---eeeEEeeeeccCCCcc-eeee------eeeccccchhhccccceeEEEEEeccccccc
Confidence 8762 112 2444554332332111 1111 1234556667778999999999999999853
|
|
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=80.85 E-value=19 Score=31.76 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=16.6
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+|.+.-. .+-+|.|.|...|....
T Consensus 135 tLtF~v~--t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 135 TLTFRVS--TSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEEEEE--ecccceEEEEeccccce
Confidence 4555443 47899999999886433
|
|
| >PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs) | Back alignment and domain information |
|---|
Probab=80.12 E-value=18 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=34.3
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
..|.+.+.+. ...+.|+.||..+..... ...+.+. ....|.|+..+.+..|....
T Consensus 32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred ceEEEEEeCC-CCcEEEEECCEEcccCCC-----CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 3444444444 338999999999843221 2223332 24679999999888887654
|
A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 505 | ||||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 1e-16 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 5e-15 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 1e-06 | ||
| 1cfb_A | 205 | Crystal Structure Of Tandem Type Iii Fibronectin Do | 1e-14 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 2e-14 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 8e-07 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 4e-14 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 5e-06 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 4e-14 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 5e-06 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 3e-12 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 1e-04 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 5e-12 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 5e-06 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 6e-12 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-09 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 7e-12 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 7e-08 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 1e-11 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 4e-11 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 8e-05 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 4e-11 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 5e-11 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 2e-10 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 2e-09 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 2e-10 | ||
| 1cs6_A | 382 | N-terminal Fragment Of Axonin-1 From Chicken Length | 4e-10 | ||
| 1cs6_A | 382 | N-terminal Fragment Of Axonin-1 From Chicken Length | 7e-06 | ||
| 2v5s_A | 394 | Structural Basis For Dscam Isoform Specificity Leng | 2e-09 | ||
| 2v5m_A | 388 | Structural Basis For Dscam Isoform Specificity Leng | 3e-09 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 4e-09 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 4e-09 | ||
| 1cvs_C | 225 | Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L | 4e-09 | ||
| 3ojv_C | 226 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 4e-09 | ||
| 2yd4_A | 210 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 5e-09 | ||
| 2yd4_A | 210 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 5e-07 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 5e-09 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 7e-09 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 5e-05 | ||
| 1evt_C | 225 | Crystal Structure Of Fgf1 In Complex With The Extra | 8e-09 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-09 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 7e-05 | ||
| 2v5r_A | 391 | Structural Basis For Dscam Isoform Specificity Leng | 8e-09 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 2e-08 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 2e-08 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 9e-05 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 2e-08 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 8e-05 | ||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 5e-08 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 8e-08 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-08 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 1e-07 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 2e-07 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 4e-06 | ||
| 2j8h_A | 197 | Structure Of The Immunoglobulin Tandem Repeat A168- | 3e-07 | ||
| 2ill_A | 195 | Anomalous Substructure Of Titin-A168169 Length = 19 | 3e-07 | ||
| 2xyc_A | 291 | Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | 7e-07 | ||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 3e-06 | ||
| 2dm3_A | 110 | Solution Structure Of The Second Ig Domain Of Human | 8e-06 | ||
| 1ii4_E | 220 | Crystal Structure Of Ser252trp Apert Mutant Fgf Rec | 9e-06 | ||
| 1e0o_B | 219 | Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C | 1e-05 | ||
| 2fdb_P | 220 | Crystal Structure Of Fibroblast Growth Factor (Fgf) | 1e-05 | ||
| 1ev2_E | 220 | Crystal Structure Of Fgf2 In Complex With The Extra | 1e-05 | ||
| 1iil_E | 220 | Crystal Structure Of Pro253arg Apert Mutant Fgf Rec | 1e-05 | ||
| 1ry7_B | 334 | Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com | 1e-05 | ||
| 3s97_C | 201 | Ptprz Cntn1 Complex Length = 201 | 1e-05 | ||
| 3grw_A | 241 | Fgfr3 In Complex With A Fab Length = 241 | 2e-05 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 4e-05 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 4e-05 | ||
| 3ojm_B | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 5e-05 | ||
| 1djs_A | 216 | Ligand-binding Portion Of Fibroblast Growth Factor | 7e-05 | ||
| 3oj2_C | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 9e-05 | ||
| 3puc_A | 99 | Atomic Resolution Structure Of Titin Domain M7 Leng | 1e-04 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 1e-04 | ||
| 2kkq_A | 116 | Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom | 2e-04 | ||
| 1nbq_A | 209 | Crystal Structure Of Human Junctional Adhesion Mole | 2e-04 | ||
| 2id5_A | 477 | Crystal Structure Of The Lingo-1 Ectodomain Length | 3e-04 | ||
| 1nun_B | 230 | Crystal Structure Analysis Of The Fgf10-fgfr2b Comp | 3e-04 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 4e-04 | ||
| 1ie5_A | 107 | Nmr Structure Of The Third Immunoglobulin Domain Fr | 7e-04 |
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains From Drosophila Neuroglian At 2.0 Angstroms Length = 205 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382 | Back alignment and structure |
|
| >pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382 | Back alignment and structure |
|
| >pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394 | Back alignment and structure |
|
| >pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225 | Back alignment and structure |
|
| >pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226 | Back alignment and structure |
|
| >pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210 | Back alignment and structure |
|
| >pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195 | Back alignment and structure |
|
| >pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | Back alignment and structure |
|
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219 | Back alignment and structure |
|
| >pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220 | Back alignment and structure |
|
| >pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220 | Back alignment and structure |
|
| >pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334 | Back alignment and structure |
|
| >pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201 | Back alignment and structure |
|
| >pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231 | Back alignment and structure |
|
| >pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216 | Back alignment and structure |
|
| >pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231 | Back alignment and structure |
|
| >pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116 | Back alignment and structure |
|
| >pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209 | Back alignment and structure |
|
| >pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477 | Back alignment and structure |
|
| >pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 283 bits (725), Expect = 2e-91
Identities = 85/407 (20%), Positives = 159/407 (39%), Gaps = 37/407 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-------GSGGRRKIF 139
+P + L++ET E G VT+ C+ E P P+ WK+ + GR ++
Sbjct: 1 QPHIIQ--LKNET-TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 140 E---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 196
+ +L I V DSG Y C A + G + L + + P +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF-ISNQTIYYSWEGN 116
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ + C + + W + + + + L+T + +LEI S D G Y
Sbjct: 117 PINISCDVKSNPPASI--HWRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRY 173
Query: 257 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKII 315
C + +G + + + P P GV+++E+ +T+A + + + G PI HY++
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + W V H + + N L P +TYE +V A N G G+ S
Sbjct: 234 VKEVASEIWKIVRSHG---------VQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKI 283
Query: 376 SPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEF 434
P +P +P I G +S ++ AP + Y + +R K+ + ++
Sbjct: 284 EIFQTLPVREP--SPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQW 339
Query: 435 QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+ ++ + + + YEV++ A N +G +
Sbjct: 340 LEKKVQ----GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEF 382
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 4e-46
Identities = 77/396 (19%), Positives = 132/396 (33%), Gaps = 56/396 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+T C+A G P +W R + R ++ L I+ + D
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS-DS 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A +++ S L + P F + Y+ EG + I C+ ++ P
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEY-APKFISNQ--TIYYSWEGNPINISCDVKSNPPASI 132
Query: 122 VWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
W++D ++ + + L I+P S +D G Y+CTATN G + L +
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT----HNGVRIGN------- 225
PS P ++ ++ V+ + H GV I +
Sbjct: 193 ADVPS-----SPY---------GVKIIELSQTTAKVS--FNKPDSHGGVPIHHYQVDVKE 236
Query: 226 MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-----KISTKTTVIVEGPPG 280
+ + + ++ + N E + G KI T+ V P
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR-EPS 295
Query: 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYT 340
P + S + T G PI Y + R+ + E + D
Sbjct: 296 -PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWL--EKKVQGNKDHII 352
Query: 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+E+ L YE ++ A N LGY EP+
Sbjct: 353 ------LEH-LQWTMGYEVQITAANRLGYSEPTVYE 381
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 51/323 (15%), Positives = 98/323 (30%), Gaps = 70/323 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGL 242
T + + L C A E + ++ W + ++ I +
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEI--TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEV------------ 290
L I + +D+G Y+C S +G + +E P +
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 291 -HKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
A+I W + + + + I D GR
Sbjct: 125 KSNPPASIHWR---RDKLVLPAKNTTNLKTYSTGRKMIL-----EIAPTSDNDFGR---- 172
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-- 404
+ A N +G + AD P +P + KI +LS
Sbjct: 173 ------------YNCTATNHIG----TRFQEYILALADVP-SSPYGV-----KIIELSQT 210
Query: 405 ---ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYT 459
+S+ P P +Y++ ++ ++ ++ +G + V+ P T
Sbjct: 211 TAKVSFNK-PDSHGGVPIHHYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEP----NT 263
Query: 460 EYEVKVQAINDVGPGPESEVVTI 482
YE++V A+N G G S++
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIF 286
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 1e-64
Identities = 72/310 (23%), Positives = 111/310 (35%), Gaps = 29/310 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFE----NG 142
P FK+ N T+ C PKP W + G II G + +I E
Sbjct: 5 PHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRN 197
L+I+ V+ DD+ +Y ATN G L V +H P E +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEV 121
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
+ ++ + + W I + + L+ DAG Y
Sbjct: 122 VSIKIPFSGKPDPVI--TWQKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 258 CVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIA 316
K+ G + V P P GV+V +V + S + WT+ + G IT+Y +
Sbjct: 178 VCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEK 237
Query: 317 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
W V + ++ N L ++Y+F+VIA N+ G +PS PS
Sbjct: 238 CATTAERWLRVGQ----------ARETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 377 PQYNTPADKP 386
T DK
Sbjct: 287 EPTITKEDKT 296
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-----LTIRYLNPERD 60
+ T C+ G P W+R G+ + + D +Y IQ+ L I + + D
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEI------IADGLKYRIQEFKGGYHQLIIASVTDD-D 73
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLT----LKPSFKKRPLESETYAGEGGNVTIFCNPEAA 116
+YQ RA NQ + +A L V P + +A G V+I
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM--GAVHALRGEVVSIKIPFSGK 131
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKG 172
P P W+K ++I + G ++ + + + V R D+G Y A N G+D+
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 173 RLIVLHGPS 181
L V P
Sbjct: 192 ELDVADVPD 200
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-13
Identities = 56/339 (16%), Positives = 87/339 (25%), Gaps = 89/339 (26%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ + + N L C W G I L L
Sbjct: 9 EELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG-GYHQLI 65
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--------PGGVQVVE------- 289
I + + DA Y+ + G +S ++ VE P + G V +
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 290 ---VHKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRY-TGR 342
K I W I HY++I ++ S V V+R G
Sbjct: 126 IPFSGKPDPVITWQ---KGQDLIDNNGHYQVIVTRSFTSL-------VFPNGVERKDAGF 175
Query: 343 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 402
+ V A N G + + AD P P + K+ D
Sbjct: 176 ----------------YVVCAKNRFGIDQKTV----ELDVADVP-DPPRGV-----KVSD 209
Query: 403 LS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457
+S ++W P + Y + + V + Y
Sbjct: 210 VSRDSVNLTWTE-PASDGGSKITNYIVEKCATTAERWL------------RVGQARETRY 256
Query: 458 -------YTEYEVKVQAINDVGPG---PESEVVTIWHDP 486
T Y+ +V A N G SE D
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDK 295
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 4e-62
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 23/277 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
+ C+ G P++ W+++ +++ ++ + VL + L+ E D
Sbjct: 308 HTRYECKIGGSPEIKVLWYKDET-------EIQESSKFRMSFVESVAVLEMYNLSVE-DS 359
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A N + SS L+V P F+K+P +G +V + C + P +
Sbjct: 360 GDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKP--HPVETLKGADVHLECELQGTPPFQV 416
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
W KD + SG + KI + I V D G Y C A+N G D G + +
Sbjct: 417 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
P + ++ I+ +QL+ + E + V W + I N + + N
Sbjct: 477 PPRFVKK-LSDISTVVGEEVQLQATIEGAEPISV--AWFKDKGEIVRESDNIWISYSEN- 532
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L+ + A A+AG+Y C +K+ G T+ V
Sbjct: 533 -IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-54
Identities = 62/328 (18%), Positives = 118/328 (35%), Gaps = 39/328 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAM 63
+T C+ G P++ +W++ L S + ++NV L I ++ D
Sbjct: 22 PITLQCKVDGTPEIRIAWYKEHTKLRSA-----PAYKMQFKNNVASLVINKVDHS-DVGE 75
Query: 64 YQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C+A+N + SSA L + L PSF ++ + + G V C + +
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKL--KDVHETLGFPVAFECRINGSEPLQV 133
Query: 122 VWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-- 176
W KDG ++ + L I + G Y+C+A+N G S +L +
Sbjct: 134 SWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
P +++ P + +A + +C + + W + I ++
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI--TWAKDNREIRPGGNYKMTLVE- 250
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVEVHKT 293
+ L + + DAG+Y C + GK S + V+ PP ++V+ +
Sbjct: 251 --NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 308
Query: 294 -----------SATIQWTDGATNGRPIT 310
+ W + I
Sbjct: 309 TRYECKIGGSPEIKVLWY---KDETEIQ 333
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 9e-53
Identities = 75/330 (22%), Positives = 120/330 (36%), Gaps = 43/330 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQ 65
C G + SW+++GE L+D L I + Y
Sbjct: 122 ECRINGSEPLQVSWYKDGE-------LLKDDANLQTSFIHNVATLQILQTDQS-HVGQYN 173
Query: 66 CRAKNQLKTRYSSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
C A N L T SSA+L + + P F +P G + T C+ K W
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 124 KKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
KD I GG K+ L + V++ D+G Y+C A+NV G D +L V P
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ ++L P + + + C + V +W + I +
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWYKDETEIQESSKFRMSFVE---SV 346
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVE-------- 289
+LE+ N S D+G+Y C + G S+ T++ V+ PP P V+ ++
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 406
Query: 290 --VHKTSATIQWTDGATNGRPIT---HYKI 314
+ W + R + YKI
Sbjct: 407 ELQGTPPFQVSWH---KDKRELRSGKKYKI 433
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 6e-49
Identities = 66/335 (19%), Positives = 110/335 (32%), Gaps = 37/335 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
T+ C G + +W ++ + Y + LT+ + D
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNR-------EIRPGGNYKMTLVENTATLTVLKVTKG-DA 265
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A N SAQL V P F K+ S + + C +P+ K
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRI-VKQDEHTRYECKIGGSPEIKV 323
Query: 122 VWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
+W KD I + + L + +S +DSG Y+C A N G S L V
Sbjct: 324 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
P + + P + ++ L C V W + + + ++ +
Sbjct: 384 PPVF-RKKPHPVETLKGADVHLECELQGTPPFQV--SWHKDKRELRSGKKYKIMS---EN 437
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP-------------GLPGGV 285
+ I N AD GEY+C + VG + ++ ++ PP G +
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQL 497
Query: 286 QVVEVHKTSATIQWT-DGATNGRPITHYKIIARTN 319
Q ++ W D R + I N
Sbjct: 498 QATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 7e-31
Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 12/200 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNL 144
P F + A G +T+ C + P+ + W K+ + S K+ +L
Sbjct: 6 PYFIEPL--EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRC 202
+I+ V D G Y+C A N G S L++ P + + + + C
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ E L V W +G + + + + L+I + G+Y C +
Sbjct: 124 RINGSEPLQV--SWYKDGELL---KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 263 TVGKISTKTTVIVEGPPGLP 282
+G S+ + + P
Sbjct: 179 PLGTASSSAKLTLSEHEVPP 198
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-30
Identities = 41/176 (23%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
CE G P SW ++ L +Y I + I ++ D YQ
Sbjct: 405 ECELQGTPPFQVSWHKDKR-------ELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQ 456
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C+A N + + + + P F K+ S+ G V + E A W K
Sbjct: 457 CKASNDVGSDTCVGSITLKA-PPRFVKKL--SDISTVVGEEVQLQATIEGAEPISVAWFK 513
Query: 126 DGN-IIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
D I+ I + N L S ++G Y+C N G E L VL
Sbjct: 514 DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 9e-61
Identities = 79/384 (20%), Positives = 132/384 (34%), Gaps = 49/384 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+TC+ G P T SW ++G+ + ++VL I + E D MYQ
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQ 405
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C +N ++ +SA+L++ R E G +V + C P P+ W+
Sbjct: 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465
Query: 126 DGNIIGSGGRRKIFE--------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
DG I + R ++ + L I+ V +D G+Y C A + G+ E +L V
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
P Y + K I A L + C + + +W + +
Sbjct: 526 GLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSI--VWERDNRAL-------PINRKQK 574
Query: 238 I-DGGLLEITNASFA-DAGEYECVVKSTVGKISTKT-TVIVEGPPGL--PGGVQVVEVHK 292
+ G L I N D Y CV K+ G + + V V P + +
Sbjct: 575 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVG 634
Query: 293 TSATIQWT-DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL 351
T+ + G I + + + V R +IE V
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTL-------DGQAISEDLGITTSRVGRRGS--VLTIEAV- 684
Query: 352 VPWSTYEFKVIAGNELGYGEPSSP 375
F A N G+ + ++P
Sbjct: 685 EASHAGNFTCHARNLAGHQQFTTP 708
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 8e-51
Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 18/281 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L TC G P + W R+ L ++ + + L I + D A Y
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALP------INRKQKVFPNGTLIIENVERNSDQATYT 596
Query: 66 CRAKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVW 123
C AKNQ + S +++V+ P E E A G +T+ C+ P W
Sbjct: 597 CVAKNQEGYSARGSLEVQVMV-LPRIIPFAFE-EGPAQVGQYLTLHCSVPGGDLPLNIDW 654
Query: 124 KKDGNIIGSGGRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 179
DG I L I V +G ++C A N+ G + L V
Sbjct: 655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP 714
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P + + P A + ++ C A V W + ++ NI ++
Sbjct: 715 PRWILE-PTDKAFAQGSDAKVECKADGFPKPQV--TWKKAVGDTPGEYKDLKKSDNIRVE 771
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTT-VIVEGPP 279
G L + N + G Y C + +G + + V+
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 172 bits (436), Expect = 2e-46
Identities = 70/321 (21%), Positives = 103/321 (32%), Gaps = 33/321 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C A G P + W++ E + + DR L I+ E D Y
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQ-AVVLNDRVKQVSGTLIIKDAVVE-DSGKYL 322
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C N + L V S K P G C P W K
Sbjct: 323 CVVNNSVGGESVETVLTVTA-PLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIKTVSWMK 379
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL--HGPSYY 183
DG IG L I V ++D G+Y C N E+ L + P
Sbjct: 380 DGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVI 432
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-LNELETPNINIDG-G 241
Q + T+ ++ L+C A ++ W +G +I N D + +N D
Sbjct: 433 RQAFQEETMEPGPSVFLKCVAGGNPTPEI--SWELDGKKIANNDRYQVGQYVTVNGDVVS 490
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--PGGVQVVE---------- 289
L IT+ D G Y+C+ KS VG + V G P + +V
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV 550
Query: 290 VHKTSATIQWTDGATNGRPIT 310
+I W + R +
Sbjct: 551 AGYPIDSIVWE---RDNRALP 568
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 168 bits (426), Expect = 5e-45
Identities = 57/343 (16%), Positives = 94/343 (27%), Gaps = 49/343 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-----RD 60
C+A G P W R+ + + R D L E
Sbjct: 56 GAEIECKASGNPMPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA---P 117
+Y C A+NQ + S + ++ ++ + G + I C +
Sbjct: 112 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADV--NKEHVIRGNSAVIKCLIPSFVADF 169
Query: 118 KPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESK 171
W D G+ + +G L I V D Y C + +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 172 GRLIVL--HGPSYYEQLPPKI--------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
+P + T + + L C A + W
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVF--RWYKFIE 287
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281
+ + G L I +A D+G+Y CVV ++VG S +T + V P
Sbjct: 288 GT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 282 PGGVQVVEVHKTS-------------ATIQWTDGATNGRPITH 311
V T+ W +G+ I H
Sbjct: 347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIGH 386
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 48/260 (18%), Positives = 87/260 (33%), Gaps = 19/260 (7%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK-PSFKKRPLESETYAGEGGNVT 108
+ + + ++ A ++ +A K P F K P +
Sbjct: 1 MNMPNERLK-WLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEP-TNRIDFSNSTGAE 58
Query: 109 IFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLLISPVSRDD------SGIYSCT 160
I C P P+ +W + DG +G G R+I +G L+ P +D + +Y+C
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 161 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA--HTEELLDVAYIWTH 218
A N G S+ + YYE K + + ++C + ++V W
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHT 177
Query: 219 NGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KISTKTTVI 274
+ + + G L I D Y+C K + ++S +
Sbjct: 178 DEEENYFPGAEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 275 VEGPPGLPGGVQVVEVHKTS 294
V P +VV + K
Sbjct: 237 VITEPISSAVPKVVSLAKFD 256
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 13/186 (6%)
Query: 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
LT C G + W +G+ ++ + R + +VLTI + +
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTLDGQAISED--LGITTSRVGRRGSVLTIEAVEAS-HAGNF 692
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
C A+N + + L V P + P ++ +G + + C + PKP+ WK
Sbjct: 693 TCHARNLAGHQQFTTPLNVYV-PPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 125 KDGNII------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
K E G L + + + + G Y C A N G S +I +
Sbjct: 750 KAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Query: 179 GPSYYE 184
++
Sbjct: 810 AHHHHH 815
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 2e-60
Identities = 70/391 (17%), Positives = 129/391 (32%), Gaps = 28/391 (7%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G + ++ P +W G+ + R L IS + +
Sbjct: 87 SNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPNFYQVIFE 140
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYIW 216
T+ H + + VL P + + A + +CSA +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGD--RL 198
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV 275
G+ + + L E++ + + N + DAG+Y C++++ G IS ++V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGK 334
+ PP Q+ V T IQ + NG PI ++ T + +W
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSW---------- 307
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE-PSSPSPQYNTPADKPYQAPSRI 393
DR + L P + YE V+ G P+ + T P + P ++
Sbjct: 308 -NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL 366
Query: 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRI 452
K ++I WEP + + + + E E + I
Sbjct: 367 EVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTI 426
Query: 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ YT VK+ +N G S+ + +
Sbjct: 427 TNLSPYTNVSVKLILMNPEGRKE-SQELIVQ 456
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-33
Identities = 72/500 (14%), Positives = 138/500 (27%), Gaps = 61/500 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L + P W +G+ + L I P +
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRT------------WNRAELAISTFWPN-FYQVIF 139
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
+ + + +++VL + G T C+
Sbjct: 140 EVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLW 199
Query: 125 KDGNIIGSGGRRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
G + ++I + + ++ D+G Y C G+ S +V+
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Query: 179 GPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
P PP++ +QL ++ + VA + D +++ +
Sbjct: 260 EPPV-PIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSY 318
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKI-------STKTTVIVEGPPGLPGGVQVVE 289
I L T V+ + G+ + +T P P ++VVE
Sbjct: 319 KIGH-LDPDTEYEI-------SVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE 370
Query: 290 VHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
V TI+W T + + E E + +
Sbjct: 371 VKSRQITIRWEPFGYNVTRC-HSYNLTVHYCYQVGGQEQVREEVSWDTENSHP----QHT 425
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 406
I N L P++ K+I N G S T D P P+ G + +
Sbjct: 426 ITN-LSPYTNVSVKLILMNPEGRK-ESQELIVQ-TDEDLPGAVPTESIQGSTFEEKIFLQ 482
Query: 407 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YT 459
W + Y+I ++ + + + + + G V + T
Sbjct: 483 WREPT--QTYGVITLYEITYKAVSSFDPEIDLSNQSGRV---SKLGNETHFLFFGLYPGT 537
Query: 460 EYEVKVQAINDVGPGPESEV 479
Y ++A G GP +
Sbjct: 538 TYSFTIRASTAKGFGPPATN 557
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 94.8 bits (235), Expect = 8e-21
Identities = 69/537 (12%), Positives = 142/537 (26%), Gaps = 78/537 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
T+ C A G + G + L + RD Y+
Sbjct: 181 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYR 239
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVW 123
C + + S+ V+ P P + + + + N P
Sbjct: 240 CMIRTEGGVGISNYAELVVKEPPVPIA-PPQLASVGATYLWIQLNANSINGDGPIVAREV 298
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ GS R+ ++ + I + D S T GP+
Sbjct: 299 EY-CTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG------SPGPALR 351
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT------HNGVRIG---------NMDL 228
+ + R L++ + + W
Sbjct: 352 TRTKCADPMRGPRKLEVVEVKSRQ----ITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQE 407
Query: 229 NELETPNINIDGGLLEITNASFADAGEYECVVK--STVGKISTKTTVIV--EGPPGLPG- 283
E + + + + T + + + + G+ ++ ++ E PG
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPT 467
Query: 284 GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRK 343
+ +QW + IT Y+I + +S + V +
Sbjct: 468 ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAV-SSFDPEIDLSNQSGRVSKLGNET 526
Query: 344 EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDL 403
L P +TY F + A G+G P++ T P P+ D
Sbjct: 527 HFLFFG-LYPGTTYSFTIRASTAKGFGPPATNQFT--TKISAP-SMPAYELETPLNQTDN 582
Query: 404 SISWEPLPREKQNAPNIYYKIFWRKKNDT------------------------------- 432
+++ P + AP Y+I ++
Sbjct: 583 TVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFA 642
Query: 433 -EFQSETLKEYGNVGIAVVRIPSEFY------YTEYEVKVQAINDVGPGPESEVVTI 482
EF +++L+ I + + ++ Y Y + QA + + + V +
Sbjct: 643 AEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQV 699
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 17/150 (11%), Positives = 35/150 (23%), Gaps = 34/150 (22%)
Query: 276 EGPPGLPGGVQVVEVHKTSATI--QWTDGATNGRPITHYKIIARTN-------------- 319
P +P +++T T+ + G P++ Y+I+
Sbjct: 563 ISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 320 -----------------WNSTWFNVSEHVIGKEVDRYTGRKEASIENV-LVPWSTYEFKV 361
+ + F + + N L+P+ +Y
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682
Query: 362 IAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
A + A P P
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPVPE 712
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 5e-55
Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 26/282 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
+ CE G P T W +N + LN P+ R + + L I L P D +Y
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLN----PIPGDSRVVVLPSGALQISRLQPG-DSGVY 192
Query: 65 QCRAKNQLKTRYS-SAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
+C A+N TR A++R+L+ + F +RP S A EG + + C P
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPP 250
Query: 119 PKFVWKKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
P F W + +I + + NLLIS V+ DDSG Y+C T + + L V
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV- 309
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
P ++ P + +++ C+ + + V W NG + + +
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV--NWMKNGDVV-------IPSDYFQ 360
Query: 238 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
I G L I +D G Y+CV ++ G + +IV P
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 9e-50
Identities = 67/334 (20%), Positives = 107/334 (32%), Gaps = 46/334 (13%)
Query: 6 DLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER----D 60
++ C A W ++G +L D + + + L I+ + R D
Sbjct: 38 NVLLNCSAESDRGVPVIKWKKDGLILALG----MDDRKQQLPNGSLLIQNILHSRHHKPD 93
Query: 61 PAMYQCRAK-NQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
+YQC A + S +A++ V F + A G V + C P
Sbjct: 94 EGLYQCEASLGDSGSIISRTAKVMVAGP-LRFLSQT--ESITAFMGDTVLLKCEVIGDPM 150
Query: 119 PKFVWKKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RL 174
P W+K+ + R + +G L IS + DSG+Y C+A N +
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 175 IVLHGPSYYE-----QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+L P + Q P + ++ L C W +
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF--TWLRGEE-----VIQ 263
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL---PGGVQ 286
+ G L I+N + D+G Y CVV IS + V PP P +
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY 323
Query: 287 VVE----------VHKTSATIQWTDGATNGRPIT 310
E K T+ W NG +
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWM---KNGDVVI 354
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-54
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 15/213 (7%)
Query: 274 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFNVSEHVI 332
IV+ P P + A I W N PI HY I T++ +W E V
Sbjct: 1 IVQDVPNAPKLT-GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 392
+ + PW+ Y F+VIA N++G PS+ S T D P++ P
Sbjct: 60 NTDSSFVVQ---------MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR 451
+ G G + +L ISW P+P + NAPN +Y + W++ +++ + + +
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF---DWRQNNIV 167
Query: 452 IPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
I + + +Y +KV AIND G + + +
Sbjct: 168 IADQPTFVKYLIKVVAINDRGESNVAAEEVVGY 200
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
+ P P V + I WT + P HY + + + + + + +
Sbjct: 102 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN-IFD 160
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
+ I + + Y KV+A N+ G ++ + D+
Sbjct: 161 WRQNNIV------IAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 205
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-53
Identities = 59/283 (20%), Positives = 98/283 (34%), Gaps = 31/283 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
T+ C G + +W ++ + Y + LT+ + D
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNR-------EIRPGGNYKMTLVENTATLTVLKVTKG-DA 73
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A N SAQL V P F K+ E + + C +P+ K
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKL-EPSRIVKQDEHTRYECKIGGSPEIKV 131
Query: 122 VWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
+W KD I + ++ L + +S +DSG Y+C A N G S L V
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
P + ++ P + ++ L C V W + + I
Sbjct: 192 PPVFRKK-PHPVETLKGADVHLECELQGTPPFQV--SWHKDKREL-------RSGKKYKI 241
Query: 239 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
+ L + I N AD GEY+C + VG + ++ ++
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 7e-39
Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 29/255 (11%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGN 143
P F +P G + T C+ K W KD I GG K+
Sbjct: 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
L + V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
+ V +W + I + + +LE+ N S D+G+Y C +
Sbjct: 123 IGGSPEIKV--LWYKDETEI---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 264 VGKISTKTTVIVEGPPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 310
G S+ T++ V+ PP P V+ ++ + W + R +
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELR 234
Query: 311 ---HYKIIARTNWNS 322
YKI++ S
Sbjct: 235 SGKKYKIMSENFLTS 249
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 78/332 (23%), Positives = 119/332 (35%), Gaps = 46/332 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ +CE G P W NG ++ + RY + D L I N +D YQ
Sbjct: 25 KVKLSCEVKGNPKPHIRWKLNGTDVD-----IGMDFRYSVVDGSLLINNPNKTQDAGTYQ 79
Query: 66 CRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C A N T S A+L+ L +FK R + + G + + C P + + + W
Sbjct: 80 CIATNSFGTIVSREAKLQFAYL-ENFKTRTRSTVS-VRRGQGMVLLCGPPPHSGELSYAW 137
Query: 124 KKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----- 177
+ RR E GNL I+ V + D G Y+C TN + G L
Sbjct: 138 IFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 197
Query: 178 -----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNEL 231
+ P Q P + ++L C A + + +W +G I
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI--LWRRADGKPIAR------ 249
Query: 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--PGGVQVVE 289
+ G+LEI N DAG YECV +++ GK K + P V
Sbjct: 250 -KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVA 308
Query: 290 VHKT-----------SATIQWTDGATNGRPIT 310
+ ++ T +W NG P+
Sbjct: 309 MEESVFWECKANGRPKPTYRWL---KNGDPLL 337
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 168 bits (426), Expect = 2e-47
Identities = 64/281 (22%), Positives = 107/281 (38%), Gaps = 29/281 (10%)
Query: 6 DLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAM 63
+ C +++Y+W N +D R+ Q+ L I + D
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPS------YQDNRRFVSQETGNLYIAKVEKS-DVGN 171
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLK---------PSFKKRPLESETYAGEGGNVTIFCNPE 114
Y C N + L L+ P + + E+ A +G V + C
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP-AEKGTTVKLECFAL 230
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
P P +W++ + R+ NG L I ++D+G Y C A N G + +KG+L
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 175 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234
+ + Q+ I +A ++ C A+ Y W NG + L
Sbjct: 291 TF-YAQPNWVQIINDIHVAMEESVFWECKANGRP--KPTYRWLKNGDPL-------LTRD 340
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
I I+ G L IT + +DAG Y+CV ++ G I + + V
Sbjct: 341 RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-34
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C A G P T W R P+ + R + +L I E D Y+
Sbjct: 222 TVKLECFALGNPVPTILWRRADGK------PIARKARRHKSNGILEIPNFQQE-DAGSYE 274
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N + QL +P++ + ++ + +V C PKP + W K
Sbjct: 275 CVAENSRGKNVAKGQLTFYA-QPNWVQII--NDIHVAMEESVFWECKANGRPKPTYRWLK 331
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+G+ + + R +I E G L I+ V+ D+G+Y C A N HG+ S L V+
Sbjct: 332 NGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 13/217 (5%)
Query: 88 PSFKKRPLESETYAG-EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLL 145
P F + P E V + C + PKP WK +G + R +G+LL
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 146 ISPVSRD-DSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
I+ ++ D+G Y C ATN G S + +L + ++ + +++ + + L C
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG 125
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
+++Y W N + + G L I +D G Y CVV +T
Sbjct: 126 P-PPHSGELSYAWIFNEYPSYQDNRRFVSQET-----GNLYIAKVEKSDVGNYTCVVTNT 179
Query: 264 VG---KISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 297
V + T +I+ + +EV
Sbjct: 180 VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP 216
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 5e-51
Identities = 69/291 (23%), Positives = 109/291 (37%), Gaps = 31/291 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAM 63
++ C+A G P +W + G+ +NS+ + F + VL I+ L RD +
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGAVLRIQPLRTPRDENV 78
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
Y+C A+N + A+L VL P+ P T+ C P
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP--QLKVVERTRTATMLCAASGNP 136
Query: 118 KPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-- 172
P+ W KD + S GR K +G L I D G Y C ATN G+ S
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPAN 196
Query: 173 -RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
+ V + + LP I N+ + C A + V W +
Sbjct: 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV--KWMQGAEDL-------T 247
Query: 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
++ + +LE+T+ D+ Y CV S++G I + V+ P
Sbjct: 248 PEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 19/208 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENG 142
P F K P + GG + C PKP+ W K G + S I
Sbjct: 6 PPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 143 NLLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PK-ITIAAH 195
L I P+ + D +Y C A N G +L VL P P+ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
R + C+A ++ W + + + N + G L+I ++ D G+
Sbjct: 124 RTATMLCAASGNPDPEIT--WFKDFLPVDPSASNGRIKQ---LRSGALQIESSEETDQGK 178
Query: 256 YECVVKSTVG-KISTKTTVIVEGPPGLP 282
YECV ++ G + S+ + V P
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAP 206
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 35/159 (22%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
PP+ + C A + V W G ++ + +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRV--TWNKKGKKVNSQRFETIEFDESA-- 61
Query: 240 GGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV---------QVVE 289
G +L I D YECV +++VG+I+ + V LP G +VVE
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 290 VHKT-----------SATIQWTDGATNGRPITHYKIIAR 317
+T I W + P+ R
Sbjct: 122 RTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGR 157
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 182 bits (462), Expect = 1e-50
Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 33/275 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L+ +C A P YSW +G + L I + + + +Y
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGNIQQH--------------TQELFISNITEK-NSGLYT 442
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKPKFVWK 124
C+A N + + K + + E + F C PEA W
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV 502
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYY 183
++ S + N L + V+R+D+ Y C N + S L VL+GP
Sbjct: 503 NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP 562
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
PP + + NL L C + + Y W NG+ + +L
Sbjct: 563 IISPPDSSYLSGANLNLSCHSASNPS--PQYSWRINGIPQQH--------------TQVL 606
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
I + + G Y C V + + +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 4e-42
Identities = 60/279 (21%), Positives = 90/279 (32%), Gaps = 33/279 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L +C A P YSWF NG S L I + + Y
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQS--------------TQELFIPNITVN-NSGSYT 264
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN-VTIFCNPEAAPKPKFVWK 124
C+A N + + K + + E + V + C PE W
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV 324
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYY 183
+ ++ S + +N L + V+R+D G Y C N +D S L VL+GP
Sbjct: 325 NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
P NL L C A + Y W +G L
Sbjct: 385 TISPSYTYYRPGVNLSLSCHAASNPPAQ--YSWLIDGNIQ--------------QHTQEL 428
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
I+N + ++G Y C ++ S T + LP
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 9e-38
Identities = 59/294 (20%), Positives = 89/294 (30%), Gaps = 35/294 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL------------NSETLPLEDQDRYFIQDN-VLTI 52
++ YSW++ + T R I N L I
Sbjct: 16 EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75
Query: 53 RYLNPERDPAMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
+ + D Y L ++ Q RV P S+ + V C
Sbjct: 76 QNIIQN-DTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP-VEDKDAVAFTC 133
Query: 112 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
PE W + ++ S + N L + V+R+D+ Y C N S
Sbjct: 134 EPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSD 193
Query: 172 G-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230
L VL+GP P + + NL L C A Y W NG
Sbjct: 194 SVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWFVNGTFQ------- 244
Query: 231 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLP 282
L I N + ++G Y C ++ + +T TT+ V P P
Sbjct: 245 -------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 30/203 (14%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 139
EG V + + + W K + G+ GR I+
Sbjct: 9 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY 68
Query: 140 ENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLH-GPSYYEQLPPKITIAAHRN 197
N +LLI + ++D+G Y+ +E+ G+ V P +
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
+ C T+ D Y+W N L ++ L + N + D Y+
Sbjct: 129 VAFTCEPETQ---DATYLWWVNNQ-----SLPVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 258 CVVKSTVG-KISTKTTVIVEGPP 279
C ++ V + S + V P
Sbjct: 181 CETQNPVSARRSDSVILNVLYGP 203
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-50
Identities = 75/334 (22%), Positives = 104/334 (31%), Gaps = 50/334 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC A P TY W NG L + RY + L I +D YQ
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELK-----MGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 66 CRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C A N T S A LR L F + EG V C+ P P + W
Sbjct: 79 CVATNARGTVVSREASLRFGFL-QEFSAEERDPVK-ITEGWGVMFTCSPPPHYPALSYRW 136
Query: 124 KKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK--------- 171
+ I G R GNL I+ D G YSC AT+
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196
Query: 172 --GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+ PS + P + + L C A + + W
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI--KWRKLDGSQ------ 248
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
T LL I N F D G YEC ++ G+ + + +I+ P + E
Sbjct: 249 ---TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTE 305
Query: 290 VHKTSA-------------TIQWTDGATNGRPIT 310
S ++W +G+P+
Sbjct: 306 ADIGSDLRWSCVASGKPRPAVRWL---RDGQPLA 336
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 3e-45
Identities = 64/279 (22%), Positives = 102/279 (36%), Gaps = 29/279 (10%)
Query: 10 TCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCR 67
TC P ++Y W N D R+ Q L I D Y C
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPN----FIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSCF 176
Query: 68 AKNQL----KTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPK 118
A + + K+ +S L + + + P ++TYA G VT+ C P
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
P+ W+K GS + + L I V +D G Y C A N+ G D +GR+I+ H
Sbjct: 237 PQIKWRKLD---GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII-H 292
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
+ + +L+ C A + A W +G + I +
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKP--RPAVRWLRDGQPLA-------SQNRIEV 343
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
GG L + D+G Y+CV ++ G + + V+
Sbjct: 344 SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-33
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C AFG P W + S ++ + +L I+ ++ E D Y+
Sbjct: 224 MVTLECFAFGNPVPQIKWRKLDGSQTS---------KWLSSEPLLHIQNVDFE-DEGTYE 273
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N ++ + +P + ++T A G ++ C P+P W +
Sbjct: 274 CEAENIKGRDTYQGRIIIHA-QPDWLDVI--TDTEADIGSDLRWSCVASGKPRPAVRWLR 330
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
DG + S R ++ G L S + +DSG+Y C A N HG + L V
Sbjct: 331 DGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 8/192 (4%)
Query: 88 PSFKKRPLESETYAG-EGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLL 145
P F+++P + G VT+ C A P + WK +G + R G+L+
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 146 I-SPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
I +PV D+G Y C ATN G S + L + + + I + CS
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
++Y W N + ++ G L I +D G Y C S
Sbjct: 125 P-PPHYPALSYRWLLNEFPN---FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 264 VGKISTKTTVIV 275
+ I+
Sbjct: 181 IDFITKSVFSKF 192
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 61/409 (14%), Positives = 123/409 (30%), Gaps = 54/409 (13%)
Query: 104 GGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
N T C + VWK + I I + + +
Sbjct: 18 HSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77
Query: 157 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPP------KITIAAHRNLQLRCSAHTEELL 210
+C ++++ + ++ LPP + + ++ E L
Sbjct: 78 LTCNILTFGQLEQNVYGITII------SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL 131
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKIS 268
+ + D + +D + N E ++ +GK++
Sbjct: 132 ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN------IEVWVEAENALGKVT 185
Query: 269 TKTTVI---VEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323
+ + P P + V E + + WT+ + I Y I RT ST
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--T 381
W + +T +++ L P++ Y F++ E G G S S + + T
Sbjct: 246 WSQIPPEDTASTRSSFT------VQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 382 PADKPYQA----PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE 437
D+P +A + + W+ LP + N + Y++ + + Q+
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT-RWKSHLQNY 357
Query: 438 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486
T+ V + Y + N VG + + D
Sbjct: 358 TVNAT----KLTVNLT----NDRYLATLTVRNLVGKSDAAVLTIPACDF 398
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 2e-18
Identities = 36/231 (15%), Positives = 60/231 (25%), Gaps = 23/231 (9%)
Query: 255 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PI 309
Y + + T + P ++WT + + I
Sbjct: 372 RYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYI 431
Query: 310 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 369
+ +++ T + + L Y V G
Sbjct: 432 LEWCVLSDKAPCITDWQQE----------DGTVHRTYLRGNLAESKCYLITVTPVYADGP 481
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429
G P S P + P+ GK + + W+ LP + QN Y IF+R
Sbjct: 482 GSPESIKAY--LKQAPPSKGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538
Query: 430 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
E + + S T Y V++ A D G E
Sbjct: 539 IGNETAVNV-----DSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 9e-15
Identities = 58/500 (11%), Positives = 119/500 (23%), Gaps = 77/500 (15%)
Query: 12 EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71
+ F V W N + + I ++ + + C
Sbjct: 33 DYFHVNANYIVWKTNHF-------TIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTF 85
Query: 72 LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP--EAAPKPKFVWKKDGNI 129
+ + + +++ P K + L EG + + E + F K +
Sbjct: 86 GQLEQNVYGITIISGLPPEKPKNLSCIVN--EGKKMRCEWDGGRETHLETNFTLKSEWAT 143
Query: 130 IGSGGRRKIFENGNLLISPVSRD--DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP 187
+ + S + A N G S ++
Sbjct: 144 HKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP-----VYKVK 198
Query: 188 PKITIAAHRNLQLRCSAHTEELLDVAYIWT----HNGV---------RIGNMDLNELETP 234
P NL + S +L + WT + + +++
Sbjct: 199 P----NPPHNLSVINSEELSSILKLT--WTNPSIKSVIILKYNIQYRTKDASTWSQIPPE 252
Query: 235 NINIDGGLLEITN-----------ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
+ + + + G+ S T + P
Sbjct: 253 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYK 312
Query: 284 GVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
+ + W I Y+ + T W S N +
Sbjct: 313 IDPSHTQGYRTVQLVWKTLPPFEANGKILDYE-VTLTRWKSHLQNYTV------------ 359
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS-PQYNTPADKPYQAPSRIGGGGGKI 400
A+ V + Y + N +G + + + P + A P
Sbjct: 360 --NATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNM-- 415
Query: 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YT 459
L + W PRE + + + ++ +E G V +
Sbjct: 416 --LWVEWTT-PRESVKKYILEWCVLSD---KAPCITDWQQEDGTVHRTY--LRGNLAESK 467
Query: 460 EYEVKVQAINDVGPGPESEV 479
Y + V + GPG +
Sbjct: 468 CYLITVTPVYADGPGSPESI 487
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-09
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 264 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIART--- 318
G + + + PP V+ +V K A ++W + + I +Y I RT
Sbjct: 481 PGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540
Query: 319 NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378
N + + S E ++ + L + Y ++ A + G + +
Sbjct: 541 NETAVNVDSSHT-------------EYTLSS-LTSDTLYMVRMAAYTDEGGKDGPEFTFT 586
Query: 379 YNTP 382
TP
Sbjct: 587 --TP 588
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-48
Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAM 63
T+ C P SW RN L+ RY I++N +LTI + D +
Sbjct: 24 VATFMCAVESYPQPEISWTRNKILIK------LFDTRYSIRENGQLLTILSVEDS-DDGI 76
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
Y C A N + S + +KP + P EG + C PKP W
Sbjct: 77 YCCTANNGVGGAVESCGALQVKMKPKITRPP--INVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIV 176
K + + R + E+G+L I V ++D+G Y C A N G SK +L V
Sbjct: 135 IKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-33
Identities = 50/195 (25%), Positives = 69/195 (35%), Gaps = 17/195 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLL 145
P A T C E+ P+P+ W ++ +I R I ENG LL
Sbjct: 7 APVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 146 -ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I V D GIY CTA N G + + + P + I L C+
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKST 263
V W + E I + + G L I N DAG+Y CV K++
Sbjct: 125 MGNPKPSV--SWIKGDSAL-------RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175
Query: 264 VGKISTKT---TVIV 275
+G +K V V
Sbjct: 176 LGTAYSKLVKLEVEV 190
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-48
Identities = 71/293 (24%), Positives = 105/293 (35%), Gaps = 32/293 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP---ERDPA 62
++ CEA G P ++ W RN N + + + L I + + E
Sbjct: 34 NILIECEAKGNPAPSFHWTRNSRFFNIAK---DPRVSMRRRSGTLVIDFRSGGRPEEYEG 90
Query: 63 MYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPK 120
YQC A+N+ T S +L+V P + K L+ EG +T+ CN P P P
Sbjct: 91 EYQCFARNKFGTALSNRIRLQVSKS-PLWPKENLDP-VVVQEGAPLTLQCNPPPGLPSPV 148
Query: 121 FVWKKDGNIIGSGGRR-KIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKG---RLI 175
W + +R NG+L S V D YSC A + L
Sbjct: 149 IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Query: 176 VLHGPSYYEQLPPKI---------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226
VL E+ P + + +L L C A D+ W G + +
Sbjct: 209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI--AWYKKGGDLPSD 266
Query: 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L ITN S D+GEY C+ + +G I +V V+ P
Sbjct: 267 KAK------FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 165 bits (418), Expect = 4e-46
Identities = 60/282 (21%), Positives = 94/282 (33%), Gaps = 25/282 (8%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAM 63
LT C G+P W + P+ R N L + +
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSME------PITQDKRVSQGHNGDLYFSNVMLQDMQTD 186
Query: 64 YQCRAKNQLKTRYSS---AQLRVLTLKPSFKKRP-------LESETYAGEGGNVTIFCNP 113
Y C A+ L+VLT + ++ P S G ++ + C
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173
P P W K G + S + N L I+ VS +DSG Y C A+N G
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 174 LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233
+ V Y+ P + +A + +L C A+ V W NG + + N
Sbjct: 307 VRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV--QWMVNGEPLQSAPPN---- 359
Query: 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
PN + G + + + Y+C + G + V V
Sbjct: 360 PNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-33
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
DL C A GVP +W++ G L S D+ ++ + L I ++ E D Y
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPS------DKAKFENFNKALRITNVSEE-DSGEYF 291
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A N++ + + +RV P + P G + + C PKP W
Sbjct: 292 CLASNKMGSIRHTISVRVKA-APYWLDEP--KNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 126 DGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+G + + ++ +Y C +N HG + + VL
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-26
Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 20/218 (9%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGG 134
S Q + P+ K+ + N+ I C + P P F W ++
Sbjct: 7 PSIQNELTQ-PPTITKQSA-KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 135 RRKIFE-NGNLLISPVS----RDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPP 188
R + +G L+I S + G Y C A N G S + RL V P + ++
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248
+ + L L+C+ L W + + D + N G L +N
Sbjct: 125 PVVVQEGAPLTLQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHN-----GDLYFSNV 178
Query: 249 SFADA-GEYECVVKSTVG---KISTKTTVIVEGPPGLP 282
D +Y C + + T+ V G+
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 3e-48
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER----DP 61
T C+A G P T W++ GE + ++ R + L + R D
Sbjct: 26 PATLNCKAEGRPTPTIEWYKGGERVETDK-DDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 62 AMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKP 119
+Y C A+N L S A L V L+ F++ P S+ G + C P P+P
Sbjct: 85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEP 142
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLH 178
WKKDG+ + R G L+I+ + D+G Y C TN+ G ES+ L VL
Sbjct: 143 TISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Query: 179 GPS 181
PS
Sbjct: 203 RPS 205
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-35
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---- 134
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 135 -RRKIFENGNLLISPV-----SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP 187
R + +G+L + SR D G+Y C A N G S L V + Q P
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 188 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247
+ +A + C + W +G + + + I I GG L IT
Sbjct: 119 SDVMVAVGEPAVMECQP-PRGHPEPTISWKKDGSPL------DDKDERITIRGGKLMITY 171
Query: 248 ASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 279
+DAG+Y CV + VG+ ++ + V P
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-47
Identities = 57/286 (19%), Positives = 97/286 (33%), Gaps = 32/286 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+TC A G P+ + GE + R +Q LTI N E D
Sbjct: 21 SKFFTCTAIGEPESIDWYNPQGE-------KIISTQRVVVQKEGVRSRLTIYNANIE-DA 72
Query: 62 AMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
+Y+C+A + + L + K +F++ S +G + + C ++P P
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPA 129
Query: 121 FVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVL 177
W + S R + N NL I +++ D GIY C G + + ++++
Sbjct: 130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Query: 178 HGPSYYEQLPPKITIAAHRN--LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
+ P A R + C A + W NG I E
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI--SWFRNGKLI-------EENEK 240
Query: 236 INI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ L + N +D G Y C + G+ + + V
Sbjct: 241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 8e-43
Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
D C P SW + E + +R+ + +N L I +N D +Y
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKS-DEGIY 168
Query: 65 QCRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+C + + + ++ + P+ A G +T C +P+P W
Sbjct: 169 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 228
Query: 124 KKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
++G +I + + N L + + D G Y C ATN G DE + L V
Sbjct: 229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV------ 282
Query: 183 YEQLPPKI 190
+
Sbjct: 283 --FVQHHH 288
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 3e-29
Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 15/198 (7%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
S+ G + C P+ + G I S R + + G L
Sbjct: 5 LQVTISL--SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 145 LISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
I + +D+GIY C AT+ G + L + + ++ + ++ C
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL-TFREVVSPQEFKQGEDAEVVCR 121
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-S 262
+ V+ W ++ + + + + L+I N + +D G Y C +
Sbjct: 122 VSSSPAPAVS--WLYHNEEVTTIS----DNRFAMLANNNLQILNINKSDEGIYRCEGRVE 175
Query: 263 TVGKISTKT-TVIVEGPP 279
G+I + VIV PP
Sbjct: 176 ARGEIDFRDIIVIVNVPP 193
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 2e-46
Identities = 67/348 (19%), Positives = 106/348 (30%), Gaps = 52/348 (14%)
Query: 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
C G V YSW ++G+ N E + L D Y
Sbjct: 23 PTVLECIIEGNDQGVKYSWKKDGKSYN----WQEHNAALRKDEGSLVFLRPQAS-DEGHY 77
Query: 65 QCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFV 122
QC A+ S R L + + E EG + C P A PKP
Sbjct: 78 QCFAETPAGVASSRVISFRKTYL-IASPAKT--HEKTPIEGRPFQLDCVLPNAYPKPLIT 134
Query: 123 WKKDG-------NIIGSGGRRKIFENGNLLISPVSRDDS---GIYSCTATNVHGMDESKG 172
WKK ++ R +GNL + V+++D Y CTA N +E
Sbjct: 135 WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194
Query: 173 RLIVL----------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222
+ G + + + A + C + + + NG
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYP--NYFKNGKD 252
Query: 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGL 281
+ + + N G L D G Y C V + VGK + + V P
Sbjct: 253 VNGNPEDRITRHNRT-SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311
Query: 282 ---PGGVQVVEVHKT-----------SATIQWTDGATNGRPITHYKII 315
P V VV+ + + + W+ N +P++ +
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS---HNAKPLSGGRAT 356
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 3e-43
Identities = 48/286 (16%), Positives = 83/286 (29%), Gaps = 32/286 (11%)
Query: 10 TCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPE--RDPAMYQ 65
C P +W + + + R + L + E D Y
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 66 CRAKNQLKTRYSSAQLRVLTL----------KPSFKKRPLESETYAGEGGNVTIFCNPEA 115
C AKN + +P + + A G I+C +
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVS--KDMMAKAGDVTMIYCMYGS 238
Query: 116 APKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
P + K+G + +I LL +D G+Y+C N G +
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 171 KG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+L V+ P Y ++ I + +++ + C +W+HN +
Sbjct: 299 HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPLSG---- 352
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ L I D G Y C + G +T V V
Sbjct: 353 ----GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
C P ++F+NG+ +N P + R+ L + PE D +Y
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGN--PEDRITRHNRTSGKRLLFKTTLPE-DEGVY 285
Query: 65 QCRAKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
C N + K + S +L V++ P ++++P E +G +VTI C P P VW
Sbjct: 286 TCEVDNGVGKPQKHSLKLTVVS-APKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ + SGGR + + L+I V D G Y C ATN HG + + V
Sbjct: 344 SHNAKPL-SGGRATV-TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 38/209 (18%), Positives = 56/209 (26%), Gaps = 11/209 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII--GSGGRRKIFENGN 143
P K +P +E E + C E + K+ WKKDG + G+
Sbjct: 6 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
L+ D G Y C A G+ S+ + T R QL C
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA---GEYECV 259
W I G L T + D +Y C
Sbjct: 124 L-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 260 VKSTVG-KISTKTTVIVEGPPGLPGGVQV 287
K+ + ++G G +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 3e-46
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
+ T C+ G P W+R G+ + + D +Y IQ+ L I + + D
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEI------IADGLKYRIQEFKGGYHQLIIASVTDD-D 73
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAA 116
+YQ RA NQ + +A L V P + +A G V+I
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM--GAVHALRGEVVSIKIPFSGK 131
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKG 172
P P W+K ++I + G ++ + + + V R D+G Y A N G+D+
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 173 RLIV 176
L V
Sbjct: 192 ELDV 195
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 6e-29
Identities = 41/209 (19%), Positives = 60/209 (28%), Gaps = 37/209 (17%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 143
P FK+ N T+ C PKP W + G II G + +I E
Sbjct: 5 PHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-----HGPSYYEQLPPKITIAAHRN 197
L+I+ V+ DD+ +Y ATN G L V H P E +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEV 121
Query: 198 LQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINI--DGG---LLEITN 247
+ ++ W I + + L+
Sbjct: 122 VSIKIPF-------SGKPDPVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNG 167
Query: 248 ASFADAGEYECVVKSTVGKISTKTTVIVE 276
DAG Y K+ G + V
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVELDVA 196
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 22/123 (17%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 273
W G I L L I + + DA Y+ + G +S ++
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 274 IVEGPPGLPG-----GVQVVEVHKTS-------------ATIQWTDGATNGRPIT---HY 312
VE P + G+ V + I W I HY
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ---KGQDLIDNNGHY 151
Query: 313 KII 315
++I
Sbjct: 152 QVI 154
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 3e-44
Identities = 57/343 (16%), Positives = 95/343 (27%), Gaps = 50/343 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-----D 60
C+A G P W R+ + + R D L E
Sbjct: 21 GAEIECKASGNPMPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 76
Query: 61 PAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA--- 116
+Y C A+NQ + S +R + ++ ++ + G + I C +
Sbjct: 77 AQVYACLARNQFGSIISRDVHVRAVVA-QYYEADV--NKEHVIRGNSAVIKCLIPSFVAD 133
Query: 117 PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDS-GIYSCTATNVHGMDES 170
W D G+ + +G L I V +D Y C + +
Sbjct: 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Query: 171 KGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
P + + + + L C A W
Sbjct: 194 LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSF--RWYKFIE 251
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281
+ + G L I +A D+G+Y CVV ++VG S +T + V P
Sbjct: 252 GT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310
Query: 282 PGGVQVVEVHKTSA-------------TIQWTDGATNGRPITH 311
V T+ W +G+ I H
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIGH 350
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-43
Identities = 60/286 (20%), Positives = 96/286 (33%), Gaps = 34/286 (11%)
Query: 6 DLTWTCEA---FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDP 61
C SW + E E +Y + + L IR + PE
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFP--GAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 62 AMYQCRAKNQL--KTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPE 114
YQCR K++L +TR S+ + R++ +P P ++ +++ C +
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 115 AAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE 169
P P F W K R +G L+I +DSG Y C N G +
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 170 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+ L V P + PP T+ R C + V W +G IG+
Sbjct: 298 VETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV--SWMKDGKAIGH---- 350
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+L I + D G Y+C V++ + +
Sbjct: 351 ---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 8e-25
Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 17/206 (8%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLL 145
P F K P + I C P P+ +W + DG +G G R+I +G L+
Sbjct: 4 PVFLKEP-TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 146 ISPVS------RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
P + +Y+C A N G S+ + YYE K + +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 200 LRCSA--HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEY 256
++C + ++V W + E + + + G L I D Y
Sbjct: 123 IKCLIPSFVADFVEV-VSWHTDEEEN-YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 180
Query: 257 ECVVKSTVG---KISTKTTVIVEGPP 279
+C K + ++S +V P
Sbjct: 181 QCRTKHRLTGETRLSATKGRLVITEP 206
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 13/120 (10%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
GP + ++ +I + ++ C A + IW + + ++
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPM--PEIIWIRSDGTA----VGDVPGLRQIS 56
Query: 239 DGGLLEITNAS------FADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEVH 291
G L A Y C+ ++ G I S V V V
Sbjct: 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 116
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 6e-44
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 9/175 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
D C P SW + E + +R+ + +N L I +N D +Y
Sbjct: 19 DAEVVCRVSSSPAPAVSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKS-DEGIY 72
Query: 65 QCRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+C + + + ++ + P+ A G +T C +P+P W
Sbjct: 73 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 132
Query: 124 KKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
++G +I + + N L + + D G Y C ATN G DE + L V
Sbjct: 133 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-32
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 24/198 (12%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLL 145
+F++ S +G + + C ++P P W + S R + N NL
Sbjct: 3 LTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 146 ISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRC 202
I +++ D GIY C G + + +++++ P Q T + C
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 203 SAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
A W NG I + L+ L + N +D G Y
Sbjct: 121 RASGSPEPA-------ISWFRNGKLIEENEKYILKG-----SNTELTVRNIINSDGGPYV 168
Query: 258 CVVKSTVGKISTKTTVIV 275
C + G+ + + V
Sbjct: 169 CRATNKAGEDEKQAFLQV 186
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 18/103 (17%)
Query: 184 EQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
++ + ++ C W ++ + + N +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNEEVTTISDNRFAM----L 54
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 279
L+I N + +D G Y C + VIV PP
Sbjct: 55 ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 97
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-43
Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 32/293 (10%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+ A P + +W +N T+P E++ R + QD L + E D Y C
Sbjct: 44 PYWLWASVSPRINLTWHKNDSAR---TVPGEEETRMWAQDGALWLLPALQE-DSGTYVCT 99
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFV 122
+N S +LRV +F + + + C K
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILT-LSTSGVLVCPDLSEFTRDKTDVKIQ 158
Query: 123 WKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-LHG 179
W KD ++ + + +LL+ V+ +D+G Y C T H + + L
Sbjct: 159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 180 PSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYI--WTHNGVRIGNMD--- 227
E+ P I + + L + C + + WT N I +
Sbjct: 219 KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG 278
Query: 228 -LNELETPNINIDGGL-----LEITNASFADAG-EYECVVKSTVGKISTKTTV 273
+ E + + L + D +++CVV +T+ + +TTV
Sbjct: 279 RVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 36/312 (11%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNP-------EAAPKPKFVWKKDGNII---GSGGRRK 137
+ + EG V + C +P+ W K+ + G R
Sbjct: 19 RFRGRHY--KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 138 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHR 196
++G L + P ++DSG Y CT N D+ L V + + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 197 NLQLRCSAHTEELLDV---AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 253
+ L C +E D W + + + + L L + + + DA
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG----TTHLLVHDVALEDA 192
Query: 254 GEYECVVKSTVGKISTKTTVIVE---------GPPGLPGGVQVVEVHK-TSATIQWTDGA 303
G Y CV+ T +E P + ++ + + TI
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252
Query: 304 TNGRP---ITHYKI---IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357
G P + + + + E + + V
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312
Query: 358 EFKVIAGNELGY 369
+FK + N L +
Sbjct: 313 DFKCVVHNTLSF 324
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-43
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP---ERDPA 62
T C+ G P+ T WF++GE +++ + R +D L E+D
Sbjct: 26 PATLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGALFFYRTMQGKKEQDGG 82
Query: 63 MYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPK 120
Y C AKN++ S A L++ L+ F+ P +T +G + C P+ P+P
Sbjct: 83 EYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEP--KDTRVAKGETALLECGPPKGIPEPT 140
Query: 121 FVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK- 171
+W KDG + G+ R +I + GNLLIS V D G Y C A N+ G ES
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200
Query: 172 GRLIVLHGPS 181
+LIV +
Sbjct: 201 AKLIVQVKAA 210
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-31
Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 20/218 (9%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---R 135
A L P + P ++ + T+ C E P+P W KDG + +
Sbjct: 1 APLAGQYQSPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH 58
Query: 136 RKIFENGNLL----ISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKI 190
R F++G L + D G Y C A N G S L + + P
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
Query: 191 TIAAHRNLQLRC---SAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINI-DGGLLEI 245
+A L C E IW +GV + ++ + + I DGG L I
Sbjct: 119 RVAKGETALLECGPPKGIPE----PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 246 TNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLP 282
+N D G Y+C+ ++ VG S+ +IV+
Sbjct: 175 SNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 10 TC-EAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQC 66
C G+P+ T W ++G L+ + + R I D L I + P D Y+C
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI-DEGNYKC 187
Query: 67 RAKNQLKTRYSS-AQLRVLTLKPSFKKRP 94
A+N + TR SS A+L V +K +
Sbjct: 188 IAQNLVGTRESSYAKLIVQ-VKAAAHHHH 215
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 8e-43
Identities = 50/311 (16%), Positives = 92/311 (29%), Gaps = 59/311 (18%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPA 62
L + C+ P +SW ++ ED R ++ +T + L + D
Sbjct: 21 LNFECDK-MTPKSEFSWSKDYV-------STEDSPRLEVESKGNKTKMTFKDLGMD-DLG 71
Query: 63 MYQCRAKNQLKTRYSSAQL-----------RVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
+Y C + S K L E E G V +
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE--ILEKGQVRFWM 129
Query: 112 NPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATNVH 165
E K + + I G + K+ + N + + + +D G Y+ +
Sbjct: 130 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 189
Query: 166 GMDESKGRLIVLHGPSYYEQL-----------------PPKITIAAHRNLQLRCSAHTEE 208
+ S L+ ++ + N+ L+C
Sbjct: 190 ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV-ANI 248
Query: 209 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGK 266
+ +W + I + G+ L IT S DAG YE ++K GK
Sbjct: 249 KKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 301
Query: 267 ISTKTTVIVEG 277
++ ++ E
Sbjct: 302 DKSRLKLVDEA 312
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 1e-24
Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 21/212 (9%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 143
+ P K+ ++ C + PK +F W KD R ++ GN
Sbjct: 2 IDPFTKEVV--VNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKT 58
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAHRNLQLR 201
+ + DD GIYSC T+ G+ S L T+ L +
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Query: 202 CSAHTEELLDV---------AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASF 250
+ + + N I ++ +I+ + G+ + +
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQD 175
Query: 251 ADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
D G Y ++ + ++ + L
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 8e-43
Identities = 61/288 (21%), Positives = 107/288 (37%), Gaps = 36/288 (12%)
Query: 6 DLTWTCEAFGVPDV-TYSWFR-NGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPE 58
+ C+ G SWF NGE L+ +Q R + N LTI N +
Sbjct: 19 SKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANID 72
Query: 59 RDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
D +Y+C + T+ + +++ K FK P + EG + I C+ ++
Sbjct: 73 -DAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAP--TPQEFKEGEDAVIVCDVVSSL 128
Query: 118 KPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P +WK G + R + N L I + + D G Y C + + + +
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 176 V-LHGPSYYEQLPPKITIAAH--RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMD 227
V ++ P + + A+ +++ L C A + WT +G I +
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-------GFPEPTMSWTKDGEPI-ENE 240
Query: 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ E + D L I N D EY C+ ++ G+ + V
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-38
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 13/179 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMY 64
D C+ T W G + L+ R+ + +N L IR + D Y
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGR-----DVILKKDVRFIVLSNNYLQIRGIKKT-DEGTY 170
Query: 65 QCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+C + + + ++V+ P+ + R A G +VT+ C+ + P+P W
Sbjct: 171 RCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW 230
Query: 124 KKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
KDG I + ++ L I V ++D Y C A N G ++ L V
Sbjct: 231 TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 34/202 (16%), Positives = 52/202 (25%), Gaps = 19/202 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGN--IIGSGGRRKIFEN--- 141
P S+ G + C K W + + R + N
Sbjct: 3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 142 -GNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
L I + DD+GIY C T G + + + P +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAV 119
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
+ C + + W H G + + L+I D G Y C
Sbjct: 120 IVCDVVSSLPPTII--WKHKGRDVILKKDVRFIV----LSNNYLQIRGIKKTDEGTYRCE 173
Query: 260 VKSTVGK--ISTKTTVIVEGPP 279
+ VIV PP
Sbjct: 174 GRILARGEINFKDIQVIVNVPP 195
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-42
Identities = 32/282 (11%), Positives = 78/282 (27%), Gaps = 33/282 (11%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
C + VP+ W S+ +++ ++ + E +C
Sbjct: 158 ALVCISESVPEPIVEWVLCD----SQGESCKEESPAVVKKEEKVLH----ELFGTDIRCC 209
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKD 126
A+N+L + L P + + G + I C W+ +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTL----PQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 127 GNIIGSGGRRKI---------FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ G ++ +S V+R+D+G Y+C+++ + ++
Sbjct: 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIV 322
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ + + S + + WT +
Sbjct: 323 E-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-------EQKGL 374
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+G + GEY ++ + + T+ +
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-37
Identities = 36/290 (12%), Positives = 82/290 (28%), Gaps = 21/290 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T +++ W LN + D + I + Y
Sbjct: 65 SITLQVLVDAPGNISCLWVFKHSSLNCQ----PHFDLQNRGVVSMVILKMTET-QAGEYL 119
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
+++ + + + R + + C E+ P+P W
Sbjct: 120 LFIQSEATNYTILFTVSIRN-TLLYTLRR---PYFRKMENQDALVCISESVPEPIVEWVL 175
Query: 126 DGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ + + ++ + D C A N G + ++ I L+
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQT--P 230
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDG 240
+ P++ + L +RC A W + +++ T I
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEV 290
+++ + D G Y C + S T++ +G + E+
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEI 338
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 22/184 (11%), Positives = 48/184 (26%), Gaps = 10/184 (5%)
Query: 6 DLTWTCEA-FGVPDVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLTIRYLNPERDP 61
L C+A +W + L + +R I+ + + D
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DT 302
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C + SA + ++ K + + +A P+ +
Sbjct: 303 GYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC 358
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
W ++ + ++ + G Y A N L + G
Sbjct: 359 TWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK 417
Query: 182 YYEQ 185
++
Sbjct: 418 HHHH 421
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 99.4 bits (247), Expect = 1e-22
Identities = 18/223 (8%), Positives = 53/223 (23%), Gaps = 20/223 (8%)
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
+ Y +++ + E ++T+ +A
Sbjct: 25 GKSSSYPMVSESP-----EDLGCALRPQSSGTVYEAAAVE--VDVSASITLQVLVDAPGN 77
Query: 119 PKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+W + + + +++I ++ +G Y + + +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
+ L L C + + V W + + E
Sbjct: 138 RNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCDSQG----ESCKEESPA 189
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + + C ++ +G+ T+ I
Sbjct: 190 VVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQT 229
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 3e-15
Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 26/227 (11%)
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 202
N + S S Y + + + L + YE + + ++ L+
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYE--AAAVEVDVSASITLQV 70
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ +W + +L+ N + I + AGEY ++S
Sbjct: 71 LVDAPGNISC--LWVFKHSSLNCQPHFDLQ----NRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 263 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 322
+ TV + + + + P
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI---SESVPEPIV---------- 171
Query: 323 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 369
W + + E VL + + A NELG
Sbjct: 172 EWVLCDSQGESCKEESP--AVVKKEEKVLHELFGTDIRCCARNELGR 216
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 7/79 (8%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ ++ P + +W + + + + ++ + P Y
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRK-------SFPCEQKGLDNGYSISKFCNHKH-QPGEY 393
Query: 65 QCRAKNQLKTRYSSAQLRV 83
A+N L +
Sbjct: 394 IFHAENDDAQFTKMFTLNI 412
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 153 bits (386), Expect = 2e-42
Identities = 47/286 (16%), Positives = 86/286 (30%), Gaps = 17/286 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ C +++ + ++N E + +++ L I Y
Sbjct: 46 PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRY 105
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C + + PS P E + + ++C A W
Sbjct: 106 LCTVTTKNGDCVQGIVRSHIRKPPSCI--PETYELGTHDKYGIDLYCGILYAKHYNNITW 163
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL------ 177
K+ + G + NL+I +DSG Y C ++ +
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI 223
Query: 178 --HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD--VAYIWTHNGVRIGNMDLNE--L 231
+ L PKI + + C+A + LL V W + I +D +
Sbjct: 224 PSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSI 283
Query: 232 ETPNINIDGGLLEITNASFADAGE-YECVVKSTVGKISTKTTVIVE 276
T + I L N + G Y C + + TTV++E
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 93.7 bits (232), Expect = 3e-21
Identities = 57/337 (16%), Positives = 97/337 (28%), Gaps = 43/337 (12%)
Query: 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE 114
++ E + + + ++ L + S L PS ++ A G + C P
Sbjct: 2 IDIENEITEFFNKMRDTLPAKDSKW------LNPSCMFGGTMNDM-AALGEPFSAKCPPI 54
Query: 115 AAPKPKFV---------WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNV 164
W+K G RR +NG+L I+ + +DS Y CT T
Sbjct: 55 EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTK 112
Query: 165 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224
+G + P ++ + L C W N +
Sbjct: 113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQEL- 170
Query: 225 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
++ + G L I N D+G Y+C V +I V
Sbjct: 171 -----IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL----T 221
Query: 285 VQVVEVHKTSATIQWTDGATNGRPIT-----HYKIIARTNWNSTWFNVSEHVIGKEVDRY 339
V + H+ + T G P + + W N S +IG + Y
Sbjct: 222 VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281
Query: 340 TGRKEAS--------IENVLVPWSTYEFKVIAGNELG 368
+ + ENV + + N
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 151 bits (382), Expect = 7e-42
Identities = 50/312 (16%), Positives = 92/312 (29%), Gaps = 57/312 (18%)
Query: 6 DLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPA 62
++ C+ + T W+++ + +++ +D + L I + + D
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDER-------EISVDEKHDFKDGICTLLITEFSKK-DAG 74
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE--------GGNVTIFCNPE 114
+Y+ K+ S +L + + G
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESK 171
K W +G+ I R K G L I+ + +D G Y + +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193
Query: 172 GRLIVL--------------------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211
L + LP +TI + L L C+ + +
Sbjct: 194 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVVKSTVGK 266
V W N + + N+ I S AD+G+Y VVK+ G
Sbjct: 254 V--SWLKNEKAL-------ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
Query: 267 ISTKTTVIVEGP 278
++ TV V P
Sbjct: 305 ETSDFTVSVFIP 316
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 6e-29
Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 25/217 (11%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGN-L 144
P F + L E NV + C K VW KD I + + L
Sbjct: 7 GPHFVE-YLSWEVT--GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
LI+ S+ D+GIY + G D+S+ +L+ K + +L+++ +A
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 205 HTEELLDVAY--------IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFAD 252
+L W+HNG I + + + L+I + D
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAI-------RYSDRVKTGVTGEQIWLQINEPTPND 175
Query: 253 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
G+Y + + + Q ++
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 212
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 154 bits (389), Expect = 3e-41
Identities = 45/380 (11%), Positives = 99/380 (26%), Gaps = 48/380 (12%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
C + VP+ W +++ ++ + E +C
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQG----ESCKEESPAVVKKEEKVLH----ELFGTDIRCC 209
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKD 126
A+N+L + L P + + G + I C W+ +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTT----LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 127 GNIIGSG---------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ G R + +S V+R+D+G Y+C+++ + ++
Sbjct: 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIV 322
Query: 178 HGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
I + + WT +
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC--TWTFSRKSFPC-------EQKG 373
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 296
+G + GEY ++ + + T+ + P V +++
Sbjct: 374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP-------QVLAEASASQ 426
Query: 297 IQWTDGATNGRP---ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353
++G P T K ++ + + +S N+
Sbjct: 427 ASCF---SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483
Query: 354 WSTYEFKVIAGNELGYGEPS 373
+ K A N LG +
Sbjct: 484 IKGFLVKCCAYNSLGTSCET 503
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 5e-41
Identities = 34/286 (11%), Positives = 70/286 (24%), Gaps = 29/286 (10%)
Query: 6 DLTWTCEAFGV-PDVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLTIRYLNPERDP 61
L C+A V +W + L + +R I+ + + D
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DT 302
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C + SA + ++ K + + +A P+ +
Sbjct: 303 GYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC 358
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
W ++ + ++ + G Y A N L +
Sbjct: 359 TWTFSRKSFPCE-QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI----- 412
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--- 238
+ P++ A Q C + L W + N E
Sbjct: 413 ---RRKPQVLAEA-SASQASCFSDGYPLPSW--TWKKCSDKSPNCTEEITEGVWNRKANR 466
Query: 239 -----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + +C +++G + GP
Sbjct: 467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 2e-37
Identities = 39/323 (12%), Positives = 89/323 (27%), Gaps = 37/323 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T +++ W LN + + Q+R + I + Y
Sbjct: 65 SITLQVLVDAPGNISCLWVFKHSSLNCQPH-FDLQNRG---VVSMVILKMTET-QAGEYL 119
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
+++ + + + R + + C E+ P+P W
Sbjct: 120 LFIQSEATNYTILFTVSIRN-TLLYTLRR---PYFRKMENQDALVCISESVPEPIVEWVL 175
Query: 126 DGNIIGS--GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ S + + ++ C A N G + ++ I L+
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQTP-- 230
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDG 240
+ P++ + L +RC A W + +++ T I
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA----- 295
+++ + D G Y C + S T++ +G + E+ +
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 296 --------TIQWTDGATNGRPIT 310
WT + +
Sbjct: 349 RFKAYPQIRCTWT---FSRKSFP 368
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 3e-22
Identities = 29/292 (9%), Positives = 73/292 (25%), Gaps = 42/292 (14%)
Query: 60 DPAMYQC----RAKNQLKTRYSSAQLRV--------LTLKPSFKKRPLESETY-AGEGGN 106
D + +C N SS+ V L+P E+ +
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNV 164
+T+ +A +W + + + G ++I ++ +G Y +
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 165 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224
+ + + L L C + + V W +
Sbjct: 126 ATNYTILFTVSIRNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCDSQG- 180
Query: 225 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGLPG 283
+ E + C ++ +G+ T+ T+ + P
Sbjct: 181 ------ESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234
Query: 284 GVQVVEVHKT------------SATIQWTDGATNGRPITHYKIIARTNWNST 323
++V + + W + + + +++
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWE---LENKALEEGNYFEMSTYSTN 283
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 95.2 bits (236), Expect = 4e-21
Identities = 25/204 (12%), Positives = 48/204 (23%), Gaps = 33/204 (16%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ ++ P + +W + + + + ++ + P Y
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRK-------SFPCEQKGLDNGYSISKFCNHKH-QPGEYI 394
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
A+N L + KP E C + P P + WKK
Sbjct: 395 FHAENDDAQFTKMFTLNIRR-KPQVLA----------EASASQASCFSDGYPLPSWTWKK 443
Query: 126 -------DGNIIGSGGRRKIFEN-------GNLLISPVSRDDSGIYSCTATNVHGMDESK 171
I G + + ++ + C A N G
Sbjct: 444 CSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCET 503
Query: 172 GRLIVLHGPSYYEQLPPKITIAAH 195
L + + K H
Sbjct: 504 ILLNSPGPFPFIQDGGTKHHHHHH 527
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 7e-41
Identities = 48/203 (23%), Positives = 73/203 (35%), Gaps = 29/203 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
++ C A G P + W +NG+ ++ Q RY + + +L I + RD
Sbjct: 23 VASFYCAARGDPPPSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVRAGRD 76
Query: 61 PAMYQCRAKNQLKTRYS-SAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNP 113
A Y+C A+N + S A L + P + P G V + C
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP--GTRVIEVGHTVLMTCKA 134
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG- 172
P P W K+ + R ++G L I +D G Y C A N G + SK
Sbjct: 135 IGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKAT 194
Query: 173 RLIVLHGPSYYEQLPPKITIAAH 195
L V ++ T H
Sbjct: 195 NLYV--------KVRRVGTKHHH 209
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 3e-28
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 24/206 (11%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 143
P ++P GG + +C P P VW+K+G + G+ R + E
Sbjct: 7 PEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 144 -LLISPV-SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP-----PK-ITIAA 194
L I PV + D Y C A N G S L + G P P I
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
+ + C A ++ W N ++ ++ P ++ G L+I N+ D G
Sbjct: 125 GHTVLMTCKAIGNPTPNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQG 176
Query: 255 EYECVVKSTVGKI-STKTTVIVEGPP 279
+YECV ++++G S T + V+
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRR 202
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-40
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+C+ G P W+R G+ L +Y + + LT+ E D
Sbjct: 24 AAQLSCQIVGRPLPDIKWYRFGK-------ELIQSRKYKMSSDGRTHTLTVMTEEQE-DE 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
+Y C A N++ +S++L + PL+ + Y G + + P P
Sbjct: 76 GVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSR-DDSGIYSCTATNVHGMDESKGRLIV 176
W ++ + I + L++ V R +G Y +NV G ++ + +
Sbjct: 136 TWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-33
Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 31/205 (15%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P +K + G + C P P W + G + + K+ +G
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE--QLPPKITIAAHRNLQLR 201
L + ++D G+Y+C ATN G E+ +L++ P ++ L K A L+L
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 202 CSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASF-A 251
+ W H + + NI I L + N
Sbjct: 125 VMY-------IGRPVPAMTWFHGQKLL-------QNSENITIENTEHYTHLVMKNVQRKT 170
Query: 252 DAGEYECVVKSTVGKISTKTTVIVE 276
AG+Y+ + + G + V ++
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 33/132 (25%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKIST 269
W G + +++ + DG L + D G Y C+ + VG++ T
Sbjct: 39 IKWYRFGKEL-------IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 270 KTTVIVEGPPGLPGGV-----QVVEVHKT-----------SATIQWTDGATNGRPIT--- 310
+ ++++ P G V T + W + +
Sbjct: 92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---GQKLLQNSE 148
Query: 311 HYKIIARTNWNS 322
+ I ++
Sbjct: 149 NITIENTEHYTH 160
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 9e-40
Identities = 56/315 (17%), Positives = 97/315 (30%), Gaps = 51/315 (16%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ +C G P W ++G L +R + L + + E D Y
Sbjct: 25 AVELSCPPPGGGPMGPTVWVKDGT-------GLVPSERVLVGPQRLQVLNASHE-DSGAY 76
Query: 65 QCRAKNQLKTRYSSAQLRVLTL--------------------KPSFKKRPLESETY--AG 102
CR + + + P + + +
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYS 158
V C P P W K+G GG + + +L++ V D G Y+
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 196
Query: 159 CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
C N G L VL H P LP T +++ C +++ +
Sbjct: 197 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 254
Query: 215 IWTH----NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264
W NG ++G L + + +L + N +F DAGEY C+ +++
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 265 GKISTKTTVIVEGPP 279
G ++V
Sbjct: 315 GFSHHSAWLVVLPAE 329
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-26
Identities = 50/272 (18%), Positives = 78/272 (28%), Gaps = 60/272 (22%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P + E G G V + C P P VW KDG + R + L +
Sbjct: 8 PGPEPGQQEQLV-FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-PQRLQV 65
Query: 147 SPVSRDDSGIYSCTATNVHGM---------------------DESKGRLIVLHGPSYYEQ 185
S +DSG YSC + DE++ + P +
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 186 L---PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ + A ++ RC A + W NG + + +
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPS-------ISWLKNGREFRGE--HRIGGIKLR 176
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-- 295
L + + +D G Y CVV++ G I T+ V +Q +A
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 296 ----------------TIQWT-DGATNGRPIT 310
IQW NG +
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE----------TLPLEDQDRYFIQDNVLTIRYL 55
D+ + C+ + W ++ E+ S+ L + + VL++ +
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 92
E D Y C A N + + SA L VL + +
Sbjct: 299 TFE-DAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-39
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAM 63
T+ G P SWFR+G+++++ TLP + D LTI + +
Sbjct: 22 TATFEAHISGFPVPEVSWFRDGQVISTSTLP---GVQISFSDGRAKLTIPAVTKA-NSGR 77
Query: 64 YQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y +A N S+A+L V T P+F +R +G V + P P
Sbjct: 78 YSLKATNGSGQATSTAELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ +DG I S +I + G+ LLI+ +DSG YS ATN G S L+V
Sbjct: 136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-31
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 32/205 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENG-- 142
P+F + EG T + P P+ W +DG +I + + F +G
Sbjct: 6 PTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAH 195
L I V++ +SG YS ATN G S L+V + PP T+
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-----PPNFVQRLQSMTVRQG 118
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFA 251
++L+ V + +G I + + I D L I A
Sbjct: 119 SQVRLQVRVTGIPTPVV--KFYRDGAEI-------QSSLDFQISQEGDLYSLLIAEAYPE 169
Query: 252 DAGEYECVVKSTVGKISTKTTVIVE 276
D+G Y ++VG+ ++ ++V+
Sbjct: 170 DSGTYSVNATNSVGRATSTAELLVQ 194
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 242
Q + + + +V W +G I + L I+ G
Sbjct: 10 QPLQSVVVLEGSTATFEAHISGFPVPEV--SWFRDGQVI---STSTLPGVQISFSDGRAK 64
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
L I + A++G Y + G+ ++ ++V+ P
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 5e-38
Identities = 54/297 (18%), Positives = 87/297 (29%), Gaps = 35/297 (11%)
Query: 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQ--DRYFIQDNVLTIRYLNPERDPA 62
+ T TC V V +W R + D + + LTI D
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DSG 286
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY-AGEGGNVTIFCNPEAAPKPKF 121
++ C A N + + L V+ K P+ + T +G NV + EA PKP+
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVD-KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEH 345
Query: 122 V-WKKDGNIIGSG--------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172
W I L ++ + + G Y+ +N
Sbjct: 346 QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF 405
Query: 173 RLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
+ V P+I T N L+C A + W + L
Sbjct: 406 NVYV--------NTKPEILTYDRLVNGMLQCVAAGFPEPTID--WYFCPGTEQRCSASVL 455
Query: 232 ETPNINIDGGL---------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
++ I +++F G EC + VGK S +G
Sbjct: 456 PVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN 512
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 4e-36
Identities = 48/298 (16%), Positives = 89/298 (29%), Gaps = 39/298 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMY 64
D C P+VT + + PL R+ + I+ +
Sbjct: 131 DTLVRCPL-TDPEVTNYSLKGCQGK-----PLPKDLRFIPDPKAGIMIKSVKRAYHRLCL 184
Query: 65 QCRAKNQLKTRYSS-AQLRVL---TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP- 119
C + K+ S L+V P + EG T+ C +
Sbjct: 185 HCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSK--ASYLLREGEEFTVTCTIKDVSSSV 242
Query: 120 KFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTATNVHGMDESK 171
WK++ + + + +G+ L IS +DSG++ C A N G
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302
Query: 172 GRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY------IWTHNGVRI 223
L V+ + + + + + N+ L A+ W +
Sbjct: 303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYE-------AFPKPEHQQWIYMNRTF 355
Query: 224 GNM--DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ D + E + L +T + G Y +V ++ + V V P
Sbjct: 356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 117 bits (293), Expect = 2e-28
Identities = 39/283 (13%), Positives = 69/283 (24%), Gaps = 33/283 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++ C G W +E + N + Y
Sbjct: 53 EIRLLCTDPGFV----KWTFEILDETNEN-----------KQNEWITEKAEAT-NTGKYT 96
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C K+ +S + V F + Y E + + C P+ K
Sbjct: 97 CTNKH---GLSNSIYVFVRDPAKLFLV---DRSLYGKEDNDTLVRCPL-TDPEVTNYSLK 149
Query: 126 --DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKG-RLIVL---H 178
G + R ++I V R C+ S+ L V
Sbjct: 150 GCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFK 209
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI--GNMDLNELETPNI 236
+ + C+ + V W + +
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFN 268
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I++A D+G + C +T G + TT+ V
Sbjct: 269 YERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 2e-24
Identities = 27/210 (12%), Positives = 45/210 (21%), Gaps = 36/210 (17%)
Query: 6 DLTWTCEAFGVPD-VTYSWFRNGELL--NSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ E P W E P + + + L + L +
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT-EGG 388
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
Y N + + V T KP N + C P+P
Sbjct: 389 TYTFLVSNSDVNAAIAFNVYVNT-KPEILTYD--------RLVNGMLQCVAAGFPEPTID 439
Query: 123 WKKDGNIIGSGGRRKIFENGN---------------LLISPVSRDDSGIYSCTATNVHGM 167
W + + I + +G C A N G
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499
Query: 168 DESKGRLIVLHGPSYYEQLPPKITIAAHRN 197
+ + K I H +
Sbjct: 500 TSAYFNFAF--------KGNNKEQIHPHHH 521
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-13
Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 23/220 (10%)
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+ Q + S + PS P +S+ G + + C K W
Sbjct: 14 LLLLLRVQTGSSQPSVSPGEPS-PPSI--HPGKSDLIVRVGDEIRLLCTDPGFVK----W 66
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ + + + ++G Y+CT + S + + P+
Sbjct: 67 TFEILDETNENK-----QNEWITEKAEATNTGKYTCTNKH----GLSNSIYVFVRDPAKL 117
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
+ + + +RC E V L + + G++
Sbjct: 118 FLVDRSLYGKEDNDTLVRCPLTDPE---VTNYSLKGCQGK---PLPKDLRFIPDPKAGIM 171
Query: 244 EITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGLP 282
+ C V +S K + V
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 2e-11
Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 26/152 (17%)
Query: 152 DDSGIYSCT----ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 207
+ + C G + PS + + + ++L C+
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPG-KSDLIVRVGDEIRLLCTDPGF 63
Query: 208 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267
WT + N + A + G+Y C K +
Sbjct: 64 ------VKWTFEILDETNEN-----------KQNEWITEKAEATNTGKYTCTNKHGLS-- 104
Query: 268 STKTTVIVEGPPGLPGGVQVVEV-HKTSATIQ 298
V V P L + + ++
Sbjct: 105 -NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR 135
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-37
Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 29/219 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ + C A G P + SW +NG E + Q L + + P D Y
Sbjct: 32 TVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS-DRGNYT 88
Query: 66 CRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
C +N+ + + L VL P + A G +V C + +P
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLP--ANQTAVLGSDVEFHCKVYSDAQPHI 146
Query: 122 VWKKDGNIIGS---------------GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
W K + GS + + L ++ VS D G Y C ATN G
Sbjct: 147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Query: 167 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
+ E L V + + + A + H
Sbjct: 207 VAEKAFWLSVHGPRA-----AEEELVEADEAGSVHHHHH 240
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-34
Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 23/239 (9%)
Query: 77 SSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG 134
+ V T P + + + V C P P W K+G
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 135 RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQL 186
R + +L++ V D G Y+C N G L VL H P L
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN---------MDLNELETPNIN 237
P T +++ C +++ + W + G+ + + +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHI--QWLKHVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 296
L + N S D GEY C + +G + V GP ++VE + +
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE--ELVEADEAGSV 235
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 5e-37
Identities = 50/284 (17%), Positives = 78/284 (27%), Gaps = 31/284 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C + G + W S L+ + + LT R + + Y+
Sbjct: 21 TVTLRCVSNG----SVEWDGPI----SPYWTLDPESPG----STLTTRNATFK-NTGTYR 67
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWK 124
C ++ L V S+ E EG + C K
Sbjct: 68 CTELEDPMAGSTTIHLYVKDPAHSWNLLA--QEVTVVEGQEAVLPCLITDPALKDSVSLM 125
Query: 125 KDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGPSY 182
++G + +I DS Y C + L V
Sbjct: 126 REGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPE 185
Query: 183 YEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
PP+I + + Q+ CSA E+ + G + LN N
Sbjct: 186 ----PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN--VILKRGDTKLEIPLNSDFQDN 239
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L + F DAG Y CV + VG + V
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 4e-23
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 13/197 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P+ P E G VT+ C + + W + + L
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPES--PGSTLTT 55
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
+ ++G Y CT + L V + L ++T+ + L C T
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-T 114
Query: 207 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVG 265
+ L + G R +P I A D+ Y C +
Sbjct: 115 DPALKDSVSLMREGGRQVLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 266 KISTKTTVIVEGPPGLP 282
ST + V P
Sbjct: 170 STSTGIWLKVNRVHPEP 186
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-37
Identities = 57/313 (18%), Positives = 95/313 (30%), Gaps = 43/313 (13%)
Query: 7 LTWTCEAFGVPD--VTYSWFRNGELLNSETLPLEDQ-----DRYFIQDNVLTIRYLNPER 59
L C A + + ++W + L D + LTI +
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS- 300
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D +Y C A + L T+ +S +RV +ES A G V I P P
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVL 177
+ W K+G + S I L I VS D+G Y+ TN ++ L+V
Sbjct: 361 EIKWYKNGIPLES--NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418
Query: 178 HGPSYYEQ--LPPKITIAAHRNLQLRCSAH--------------------------TEEL 209
P E+ + P + L C+ + +
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 210 LDVAYIWTHNGVRIGNMDLNELETPNINIDGG---LLEITNASFADAGEYECVVKSTVGK 266
W G + + I+G + + + + Y+C + VG+
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538
Query: 267 ISTKTTVIVEGPP 279
+ V P
Sbjct: 539 GERVISFHVTRGP 551
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 144 bits (363), Expect = 6e-37
Identities = 57/329 (17%), Positives = 95/329 (28%), Gaps = 36/329 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
TC G D+ + W N E D F + LTI + D Y+C +
Sbjct: 52 TCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK--TLTIPKVIGN-DTGAYKCFYR 106
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKRPLESETY--AGEGGNVTIFCNPEAAPKP--KFVWKK 125
++ Y + V I C +
Sbjct: 107 ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP 166
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 185
+ + G R I +G+ C A +S ++V+ G Y+
Sbjct: 167 EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDV 226
Query: 186 L---PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIGNMDLNELETPNIN 237
+ I ++ L L C+A TE + + + W + ++ N DL +
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-----GGVQVVEVHK 292
L I + +D G Y C S + T V V P + + V +
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGE 346
Query: 293 T-----------SATIQWTDGATNGRPIT 310
I+W NG P+
Sbjct: 347 RVRIPAKYLGYPPPEIKWY---KNGIPLE 372
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 5e-36
Identities = 47/333 (14%), Positives = 90/333 (27%), Gaps = 69/333 (20%)
Query: 7 LTWTCEAFGVPD-VTYSWFRNGELLNSETLP--------------------------LED 39
T TC + +P W+ E + +
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 40 QDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPL 95
++++ + + V T+ A+Y+C A N++ V T P +P
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAVNKVGRGERVISFHV-TRGPEITLQP- 557
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------------GRRK 137
+ E +V+++C + + W K G
Sbjct: 558 --DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNAT 615
Query: 138 IFENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPSYYEQLPPK 189
+F N + + S D G Y C A + +
Sbjct: 616 MFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLEN 675
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS 249
T + ++++ C+A + +W + + E + L I
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-----VEDSGIVLKDGNRNLTIRRVR 728
Query: 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
D G Y C S +G + I+EG
Sbjct: 729 KEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 1e-34
Identities = 44/294 (14%), Positives = 82/294 (27%), Gaps = 37/294 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
+ C R E + D +R TI M
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKR-----FVPDGNRISWDSKKGFTIPSYMIS-YAGMV 198
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFVW 123
C AK ++ S + V+ + S G + + C +
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Query: 124 KKDGN-------------IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
+ + G L I V+R D G+Y+C A++ ++
Sbjct: 259 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 318
Query: 171 KGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
+ V P + + + +++ ++ W NG+ +
Sbjct: 319 STFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI--KWYKNGIPL----- 371
Query: 229 NELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTT--VIVEGPP 279
N I G +L I S D G Y ++ + + K ++V PP
Sbjct: 372 ----ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 3e-27
Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 25/203 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDN------------ 48
++ C A +W++ G P+ + N
Sbjct: 566 SVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL 625
Query: 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL---KPSFKKRPLESETYAGEGG 105
++ ++ + + D Y C A+++ + ++ L P+ G
Sbjct: 626 IMELKNASLQ-DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNL--ENQTTSIGE 682
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNV 164
++ + C P P+ +W KD + + N NL I V ++D G+Y+C A +V
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 165 HGMDESKGRLIVLHGPSYYEQLP 187
G + + I+ G L
Sbjct: 743 LGCAKVEAFFII-EGAQEKTNLE 764
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 8e-26
Identities = 29/232 (12%), Positives = 56/232 (24%), Gaps = 24/232 (10%)
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
A++ C S L + P + + I C
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDL----PRLSIQK--DILTIKANTTLQITC--RGQRDL 59
Query: 120 KFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
++W + + +G L I V +D+G Y C +
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Query: 176 VLHGPSY----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
P + IT ++ + + C L +
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFV-------P 172
Query: 232 ETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
+ I+ D I + + AG C K + ++V +
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 9e-37
Identities = 39/194 (20%), Positives = 59/194 (30%), Gaps = 23/194 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ + C A G P T W +NG+ E + Q L + + P D Y
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMESVVPS-DKGNYT 92
Query: 66 CRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
C +N+ + + L V+ P + GG+V C + +P
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLP--ANASTVVGGDVEFVCKVYSDAQPHI 150
Query: 122 VWKKDGNIIGSG--------------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167
W K GS L + V+ D+G Y C +N G
Sbjct: 151 QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
Query: 168 DESKGRLIVLHGPS 181
L VL
Sbjct: 211 ANQSAWLTVLPKQQ 224
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 20/217 (9%)
Query: 88 PSFKK--RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----EN 141
P + + + V C P P W K+G R + ++
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 75
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRN 197
+L++ V D G Y+C N +G L V+ H P LP + +
Sbjct: 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD 135
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-------LETPNINI-DGGLLEITNAS 249
++ C +++ + W + + G+ + L+ IN + +L + N +
Sbjct: 136 VEFVCKVYSDAQPHI--QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 286
ADAGEY C V + +G+ + + V PG +
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 4e-36
Identities = 45/286 (15%), Positives = 76/286 (26%), Gaps = 33/286 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
+T C G + W P Y ++L+ + + Y
Sbjct: 21 TVTLRCVGNG----SVEWDGP---------PSPHWTLYSDGSSSILSTNNATFQ-NTGTY 66
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVW 123
+C ++ L V + E E + + C +
Sbjct: 67 RCTEPGDPLGGSAAIHLYVKDPARPWNVLA--QEVVVFEDQDALLPCLLTDPVLEAGVSL 124
Query: 124 KK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGPS 181
+ G + I S Y C+A + RL V
Sbjct: 125 VRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP 184
Query: 182 YYEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234
PP +T+ Q+ CSA + ++ + HN ++ ++
Sbjct: 185 G----PPALTLVPAELVRIRGEAAQIVCSASSVDV-NFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
L + F AG Y CV + GK ST V G
Sbjct: 240 RYQKVL-TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 8e-19
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 15/197 (7%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P + P E G VT+ C + + W DG + L
Sbjct: 4 IPVIE--PSVPELVVKPGATVTLRCVGNGSVE----W--DGPPSPHWTLYSDGSSSILST 55
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
+ + ++G Y CT + L V + L ++ + ++ L C T
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL-T 114
Query: 207 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG- 265
+ +L+ R N +P I A F + +Y+C
Sbjct: 115 DPVLEAGVSLVRVRGRPLMRHTNYSFSPW-----HGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 266 KISTKTTVIVEGPPGLP 282
+S + V+ P
Sbjct: 170 VMSISIRLKVQKVIPGP 186
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 9e-36
Identities = 47/296 (15%), Positives = 81/296 (27%), Gaps = 33/296 (11%)
Query: 7 LTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
C T +W+++ + E R L E D Y
Sbjct: 23 DVRPCPLNPNEHKGTITWYKDDSKTP---VSTEQASRIHQHKEKLWFVPAKVE-DSGHYY 78
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKK-RPLESETYAGEGGNVTIFCN------PEAAPK 118
C +N + + +P+ + G+ + C E
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVL 177
PK W KD + L++ V+ G Y+C A+ + + R+I
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 178 HGPSYYEQLPPKITIAAHR--------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+ P I A+ +QL C+ + W NG I D
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA--YWKWNGSVIDEDDPV 256
Query: 230 ELE---------TPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKISTKTTVIV 275
E + +L I+ + C K+T G + +I
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 2e-23
Identities = 47/316 (14%), Positives = 77/316 (24%), Gaps = 50/316 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGN---IIGSGGRRKIFENGN 143
K+R + + C K W KD + + R
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS---YYEQLPPKITIAAHRNLQL 200
L P +DSG Y C N K + Y Q K + + L
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 201 RCSAHTEELLD---VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
C + + + W + + L+ + + L + N + G Y
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPL------LLDNIHFSGVKDRLIVMNVAEKHRGNY 177
Query: 257 ECVVKSTVGKISTKTTVIVEG----------PPGLPGGVQVVEVHKTSA----------- 295
C T T ++E P + + +EV S
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 296 --TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353
W NG I + + R T +I +
Sbjct: 238 SDIAYWKW---NGSVI-------DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR 287
Query: 354 WSTYEFKVIAGNELGY 369
+ + F A N G
Sbjct: 288 FYKHPFTCFAKNTHGI 303
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE---------TLPLEDQDRYFIQDNVLTIRYLN 56
+ C G W NG +++ + ++ R VL I +
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRV 83
+ C AKN + QL
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQLIY 312
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-35
Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 33/212 (15%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PG P ++V EV KTS T+ W G I +Y + R + + V+ +
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC----- 59
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ ++ L +Y F+V+A NE G G P+ + +++P P +I
Sbjct: 60 ----HKTSWKVDQ-LQEGCSYYFRVLAENEYGIGLPAETAESV-KASERP-LPPGKITLM 112
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456
+S+SWE P + + Y + + K ++ + +
Sbjct: 113 DVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGSDKWAT------------CATVKVTE 159
Query: 457 Y-------YTEYEVKVQAINDVGPGPESEVVT 481
EY +V A N+ G ++
Sbjct: 160 ATITGLIQGEEYSFRVSAQNEKGISDPRQLSV 191
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-14
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 271 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 329
+V P PG + +++V + S ++ W G I Y + +T + W +
Sbjct: 95 ESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT 154
Query: 330 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+V T I L+ Y F+V A NE G +P S
Sbjct: 155 V----KVTEAT------ITG-LIQGEEYSFRVSAQNEKGISDPRQLS 190
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
++++W+P P + Y + R+ + T+ + V
Sbjct: 22 VTLTWDP-PLLDGGSKIKNYIVEKRESTRKAYS--TVATNCHKTSWKVDQLQE----GCS 74
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y +V A N+ G G +E
Sbjct: 75 YYFRVLAENEYGIGLPAETAES 96
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-35
Identities = 42/277 (15%), Positives = 79/277 (28%), Gaps = 39/277 (14%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T CE +P + WF NG + T I + D Y+
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNGTATQTST-------------PSYRITSASVN-DSGEYR 64
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ S +++ + + S EG + + C+ ++
Sbjct: 65 CQRGL----SGRSDPIQLEIHRGWLLLQV--SSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY-Y 183
++G N NL I + +G Y C+ H + + V
Sbjct: 119 RNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
+ + L C + G+++ +T
Sbjct: 174 LNASVTSPLLEGNLVTLSCET--------KLLLQRPGLQLYFSFYMGSKTLRGRNTSSEY 225
Query: 244 EITNASFADAGEYECVVKSTVGKI---STKTTVIVEG 277
+I A D+G Y C + G + S + + V G
Sbjct: 226 QILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 6e-21
Identities = 36/197 (18%), Positives = 56/197 (28%), Gaps = 26/197 (13%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLL 145
K +P + E VT+ C P W +G + +
Sbjct: 1 KAVITLQPPWVSVFQEE--TVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYR 51
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
I+ S +DSG Y C D +L + G + L LRC A
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAW 107
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
++L+ ++ NG L I + + G Y C
Sbjct: 108 KDKLV-YNVLYYRNGKAFKFFH-----------WNSNLTILKTNISHNGTYHCSGMGKHR 155
Query: 266 KISTKTTVIVEGPPGLP 282
S +V V+ P
Sbjct: 156 YTSAGISVTVKELFPAP 172
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 2e-20
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 28/174 (16%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
L C A+ ++RNG+ ++F ++ LTI N Y
Sbjct: 99 PLALRCHAWKDKLVYNVLYYRNGKAF-----------KFFHWNSNLTILKTNIS-HNGTY 146
Query: 65 QCRAKNQLKTRYSSAQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--- 119
C + + + + V L P + EG VT+ C + +
Sbjct: 147 HCSGMGKHRYTSAGISVTVKELFPAPVLNASV---TSPLLEGNLVTLSCETKLLLQRPGL 203
Query: 120 --KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
F + + + I R+DSG+Y C A G +
Sbjct: 204 QLYFSFYMGSKTLRGRNT-----SSEYQILTARREDSGLYWCEAATEDGNVLKR 252
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-34
Identities = 54/307 (17%), Positives = 94/307 (30%), Gaps = 35/307 (11%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETL--PLEDQDRYFIQDNVLTIRYLNPERDP 61
+ L + +T W+ + + E ++R + +VL R D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN-DT 91
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSF-KKRPLESETYAGEGGNVTIFC-----NPEA 115
Y C +N + L V+ F L E G I C +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR-- 173
+ KP W I I E NL ++G Y+C T
Sbjct: 152 SVKPTITWYMGCYKI-QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210
Query: 174 --LIVLHGPSYYEQLPPKI---------TIAAHRNLQLRCSAHTEELLD--VAYIWTHNG 220
+ V+ P +PP I L + C+ + L+D WT +G
Sbjct: 211 LTVKVVGSP--KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG 268
Query: 221 VRIGNMDLNELETPNINID-------GGLLEITNASFAD-AGEYECVVKSTVGKISTKTT 272
+ ++ ++ +I+ +L I + D Y C +S G+++
Sbjct: 269 KKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328
Query: 273 VIVEGPP 279
V + P
Sbjct: 329 VKQKVPA 335
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 88.0 bits (217), Expect = 3e-19
Identities = 47/310 (15%), Positives = 82/310 (26%), Gaps = 62/310 (20%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGN--------IIGSGGRRKIFENGNLLISPVSRDDS 154
+ + + +W R E L P +D+
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRC---SAHTEE 208
G Y+C N + L V+ S + +LP + ++ C +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 209 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV---- 264
+ W +I N N+ +G L A ++ G Y CVV
Sbjct: 152 SVKPTITWYMGCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204
Query: 265 GKISTKTTVIVEGPP--------GLPGGVQVVEVH-----------------KTSATIQW 299
++ TV V G P P V E + + W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
T +G+ I ++E + + T + SI+ V +
Sbjct: 265 TI---DGKKPDDITIDVT---------INESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 360 KVIAGNELGY 369
A + G
Sbjct: 313 VCHARSAKGE 322
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 6 DLTWTCEAF----GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-------VLTIRY 54
+L C + W +G+ + T+ + + +L+I+
Sbjct: 243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKK 302
Query: 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 92
+ E Y C A++ +A+++ P +
Sbjct: 303 VTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTV 340
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-34
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 20/182 (10%)
Query: 6 DLTWTCEAFGVP-DVTYSWFR-NGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPE 58
+ C+ G D SWF NGE L+ +Q R + N LTI N +
Sbjct: 19 SKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANID 72
Query: 59 RDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
D +Y+C + T+ + +++ K FK P + EG + I C+ ++
Sbjct: 73 -DAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAP--TPQEFKEGEDAVIVCDVVSSL 128
Query: 118 KPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P +WK G I+ R + N L I + + D G Y C + + + +
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 176 VL 177
V+
Sbjct: 189 VI 190
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 21/199 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGN--IIGSGGRRKI----FE 140
P S+ G + C K K + W + + R + +
Sbjct: 3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 200
+ L I + DD+GIY C T G + + ++ P + +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 201 RCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFADAGEYE 257
C + + IW H G + + ++ L+I D G Y
Sbjct: 121 VCDVVSSLPPTI--IWKHKGRDV-------ILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 258 CVVKSTVGKISTKTTVIVE 276
C + + V
Sbjct: 172 CEGRILARGEINFKDIQVI 190
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 2e-34
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
++ C+A G P W + G+ + +Q I+ + VL I+ L RD
Sbjct: 23 VASFICQATGDPRPKIVWNKKGK-------KVSNQRFEVIEFDDGSGSVLRIQPLRTPRD 75
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTL------KPSFKKRPLESETYAGEGGNVTIFCNPE 114
A+Y+C A N + S +L VL P+ P T+ C
Sbjct: 76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP--QLKVVERTRTATMLCAAS 133
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMD 168
P P+ W KD + + + G L I D G Y C ATN G
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
Query: 169 ES-KGRLIVLHGPSYYEQ 185
S L V ++
Sbjct: 194 YSAPANLYVRGTKHHHHH 211
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-33
Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 18/206 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN-- 143
P F + P + GG + C P+PK VW K G + + I F++G+
Sbjct: 6 PPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 144 -LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAA 194
L I P+ + D IY C A+N G RL V + P I +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV-LREDQIPRGFPTIDMGPQLKVVER 122
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
R + C+A ++ W + + + + N + G L+I + +D G
Sbjct: 123 TRTATMLCAASGNPDPEI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 255 EYECVVKSTVG-KISTKTTVIVEGPP 279
+YECV ++ G + S + V G
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGTK 206
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVI 274
W G ++ N +E + + G +L I D YECV + VG+IS T +
Sbjct: 40 WNKKGKKVSNQRFEVIEFDDGS--GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQ 298
V +P G +++ ++
Sbjct: 98 VLREDQIPRGFPTIDMGPQLKVVE 121
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 135 bits (339), Expect = 6e-34
Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 17/243 (6%)
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 311
+G +C T+ P ++ E+ ++W+
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI 193
Query: 312 YKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLVPWSTYEFKVIAGNELGYG 370
Y + R N+ SE + + + + P Y+F+V A N G
Sbjct: 194 YVVQRRWNYGIHP---SEDDATHWQTVAQTTDERVQLTD-IRPSRWYQFRVAAVNVHGTR 249
Query: 371 EPSSPSPQYNTPAD-KPYQAPSRIGGGGGKIG-----DLSISWEPLPREKQNAPNIYYKI 424
++PS + + D AP+ + + ++I W+ E+ + P +YK+
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKV 307
Query: 425 FWRKK-NDTEFQSETLKEYGNVGIAV--VRIPSEFYYTEYEVKVQAINDVGPGP-ESEVV 480
FW + K V + +Y V++QAI G +S V
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV 367
Query: 481 TIW 483
++
Sbjct: 368 SLH 370
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 79.6 bits (195), Expect = 7e-16
Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 38/242 (15%)
Query: 271 TTVIVEGPPGLPGGVQVVEVH-----KTSATIQWTDGATNGRPITHYKIIARTNWNSTWF 325
+ P P +++ + TI W P+ HYK+ +S
Sbjct: 259 RSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSL 318
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNTPA 383
++ K D + +E L P Y ++ A G S S + +
Sbjct: 319 VPTKKKRRKTTDGFQ--NSVILEK-LQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTH 375
Query: 384 DKPYQ-----------------------APSRIGGGGGKIGDLS--ISWEPLPREKQNAP 418
+ P +G + G L + W+ N
Sbjct: 376 ATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRY 435
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
++ + N T + + G + + + +Y+V VQ I
Sbjct: 436 HVRWFPEACAHNRT---TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEA 492
Query: 479 VV 480
V
Sbjct: 493 VF 494
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 70.4 bits (171), Expect = 5e-13
Identities = 31/254 (12%), Positives = 65/254 (25%), Gaps = 44/254 (17%)
Query: 259 VVKSTVGKISTKTTVIVEGPPG-LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR 317
+VK+ G I T+ P L G + + + W T + Y +
Sbjct: 383 LVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK--TEDPTVNRYHV--- 437
Query: 318 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS--- 374
W + + T +++ L Y+ V + + +
Sbjct: 438 -RWFPEACAHNRTTGSEASSGMTHENYIILQD-LSFSCKYKVTVQPIRPKSHSKAEAVFF 495
Query: 375 ---------------------PSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE 413
+ KP + I SW+ +
Sbjct: 496 TTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNI-TGHFSWKM-AKA 553
Query: 414 KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--------TEYEVKV 465
P +++ W + Q+ + + + + T Y ++V
Sbjct: 554 NLYQPMTGFQVTWAEVTTESRQNSL--PNSIISQSQILPSDHYVLTVPNLRPSTLYRLEV 611
Query: 466 QAINDVGPGPESEV 479
Q + G GP +
Sbjct: 612 QVLTPGGEGPATIK 625
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680 | Back alignment and structure |
|---|
Score = 60.4 bits (145), Expect = 9e-10
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 6/128 (4%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFN 326
+ V P +V+ + W A +P+T +++ + N
Sbjct: 517 AGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN 576
Query: 327 VSEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
+ I + ++ N L P + Y +V G G + + + TP
Sbjct: 577 SLPNSIISQSQILPSDHYVLTVPN-LRPSTLYRLEVQVLTPGGEGPATIKTFR--TPELP 633
Query: 386 PYQAPSRI 393
P + R
Sbjct: 634 P-SSAHRS 640
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-33
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 13/211 (6%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVD 337
P V + S ++W +G PI +K+ R W ++++ +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 338 RYTGRKEASIENV--LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ---APSR 392
+ ++ +V L P TY F+++A + S+ S ++ P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR- 451
+ + + W + Y ++R + + E + +
Sbjct: 122 LEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 452 -IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
T YE K+Q+ + S +
Sbjct: 181 LET----ATMYEFKLQSFSAASASEFSALKQ 207
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 6e-12
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 262 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNW 320
S P +P +++ E +T+ + W+ + + IT Y R +
Sbjct: 99 SNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSS 158
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
++ + + G + I L + YEFK+ + + E S+
Sbjct: 159 SAGEY-FKATIEGAHARSFK------IAP-LETATMYEFKLQSFSAASASEFSALK 206
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-33
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%)
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
Y+ ++ + R ++ P Q P + + + C +
Sbjct: 1 ATYAAASSAL------VPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATI-- 50
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W +G + + + + ++ N LE+T S D G Y C + +G+ S + ++
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYN-TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSE 329
P P VE + ++A +Q+ + AT G PI YK + W+S W++ E
Sbjct: 110 QADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 168
Query: 330 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+I L P +TY ++ A N G GE S+ S
Sbjct: 169 AS---------MEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASE 206
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 6e-18
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
A Y + + P + Y EG V I C A P
Sbjct: 1 ATYAAASSALVPRGSHMY-------APKLQGP---VAVYTWEGNQVNITCEVFAYPSATI 50
Query: 122 VWKKDGNIIGSGG--RRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
W +DG ++ S KI+ + L ++P S +D G Y+CTA N G + + L+
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Query: 177 LHGPSYYEQLPPKITIA 193
PS P I
Sbjct: 111 ADTPS-----SPSIDQV 122
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
TCE F P T SWFR+G+LL S + I + L + + D Y
Sbjct: 39 TCEVFAYPSATISWFRDGQLLPS-----SNYSNIKIYNTPSASYLEVTPDSEN-DFGNYN 92
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS 89
C A N++ L PS
Sbjct: 93 CTAVNRIGQESLEFILVQAD-TPS 115
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464
+ ++ P P + YK WR + + S+ +V I T Y V+
Sbjct: 131 VQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189
Query: 465 VQAINDVGPGPESEVVTIWHDP 486
+ A+N G G S P
Sbjct: 190 LAALNGKGLGEISAASEFKTQP 211
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-33
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 20/215 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGR 135
K S S+ E ++ + C P+ WK + I
Sbjct: 1 KGSVYTAQ--SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 136 RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAA 194
R F + + S V+R D+G Y+C + G + + + + P + ++
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL-----ETPNINIDGGLLEITNAS 249
L CS H Y W +G+ + D + + I+ G L +
Sbjct: 119 GNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
D+GEY C ++ G ++ GG
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 212
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-28
Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 21/189 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNG-----ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+ TC G W + + + DR + +T + + D
Sbjct: 18 SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK-D 76
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPK 118
Y C + Y + + L PS + G + C+ + +P
Sbjct: 77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS--VPSSVTIGNRAVLTCSEHDGSPP 134
Query: 119 PKFVWKKDGNIIGSGGRRKIF-----------ENGNLLISPVSRDDSGIYSCTATNVHGM 167
++ W KDG + + +K ++G+L+ PV+ DSG Y C A N +G
Sbjct: 135 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
Query: 168 DESKGRLIV 176
+
Sbjct: 195 AMRSEAAHM 203
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELL---NSETLPLEDQDRYFIQDNV--LTIRYLNPER 59
TC G P YSWF++G + +++ + I L +
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF- 179
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
D Y C+A+N T S + ++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-33
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S T V P P +++ + S + WT G N PIT + I +
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+G + + N L P+ Y F+V+A N +G PS S QY T A +P
Sbjct: 66 -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117
Query: 388 QAPSRIGGGG 397
+ P+ G
Sbjct: 118 KNPTSGPSSG 127
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 422
G S P+P D P P + ++ D +SW P + N+P +
Sbjct: 1 GSSGSSGPTPA--PVYDVP-NPPFDL-----ELTDQLDKSVQLSWTP--GDDNNSPITKF 50
Query: 423 KI-FWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEVV 480
I + + + G A + P Y Y +V A+N +G SE
Sbjct: 51 IIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSP----YVNYSFRVMAVNSIGKSLPSEAS 106
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 3e-33
Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 20/188 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+ +C G W + + + +DR +T + + E D
Sbjct: 21 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE-D 79
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPK 118
Y C + Y +++++ L PS + A G + C+ + +P
Sbjct: 80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN--IPSSATIGNRAVLTCSEQDGSPP 137
Query: 119 PKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ W KDG ++ + + G L+ P+S D+G YSC A N +G
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 169 ESKGRLIV 176
+ + +
Sbjct: 198 MTSNAVRM 205
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-32
Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 17/206 (8%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-----------NIIGSGGRR 136
S E E E V + C P+ WK D I S R
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAH 195
F + V+R+D+G Y+C + G + ++ ++ P + +
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFA 251
L CS Y W +G+ + + + +N G L S +
Sbjct: 123 NRAVLTCSEQDGSPP-SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEG 277
D GEY C ++ G T V +E
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-33
Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 25/206 (12%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNII---GSGGRRKIFE 140
L P + E EG + + C+P + W + + R
Sbjct: 7 LDPFPPEER--PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKIT 191
NGNL I+ V D G YSC ++ + I L P+ +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA 251
+N+ L C A + D+ W + T I+ G +L+I N
Sbjct: 125 ALMGQNVTLECFALGNPVPDI--RWRKVLEPM-------PSTAEISTSGAVLKIFNIQLE 175
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEG 277
D G YEC ++ GK + + V+
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYVQA 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 6 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPA 62
+ C+ D++Y W N + D+ R+ Q N L I + D
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFIT----MDKRRFVSQTNGNLYIANVEAS-DKG 79
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE-------SETYAGEGGNVTIFCNPEA 115
Y C + T+ ++ L P +P + YA G NVT+ C
Sbjct: 80 NYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P P W+K + L I + +D GIY C A N+ G D+ + R+
Sbjct: 140 NPVPDIRWRKVLEPM-PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Query: 176 V 176
V
Sbjct: 199 V 199
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 9e-32
Identities = 47/280 (16%), Positives = 70/280 (25%), Gaps = 25/280 (8%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQ 65
LTW + + S+ L N L + L E D Y
Sbjct: 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE-DEGNYT 95
Query: 66 CRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C +R LRVL KP + C P + W
Sbjct: 96 CLFVTFPQGSRSVDIWLRVL-AKPQNTAEV--QKVQLTGEPVPMARCVSTGGRPPAQITW 152
Query: 124 KKDGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATN--VHGMDESKGRLI 175
D + + + F +G ++ P S+ D +C + L
Sbjct: 153 HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT 212
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
V + P L C A + Y W+ + P
Sbjct: 213 VYYPPEVSISGYDNNWYLGQNEATLTCDARSN-PEPTGYNWSTTMGPL---------PPF 262
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
G L I C V + +G + TV V
Sbjct: 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 1e-14
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 39/206 (18%)
Query: 103 EGGNVTIFCNPEAAPKP-----KFVWKKDGNIIG---------------------SGGRR 136
G +VT+ C + + W + G +
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 137 KIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 195
N +L + + +D G Y+C T G L VL P + K+ +
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGE 132
Query: 196 RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 250
RC + W + + N L + +S
Sbjct: 133 PVPMARCVSTG------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Query: 251 ADAGEYECVVKSTVGKISTKTTVIVE 276
D C V+ + TV +
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLT 212
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-31
Identities = 49/321 (15%), Positives = 96/321 (29%), Gaps = 49/321 (15%)
Query: 10 TCEAFGVPDVTYSWFRNGELL-----------NSETLPLEDQDRYFIQDN---VLTIRYL 55
TC A + + W + ++ L R + D L I+ L
Sbjct: 15 TCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL 74
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 115
E D Y C ++Q QL V L + S+T+ +G ++T+
Sbjct: 75 KIE-DSDTYICEVEDQ----KEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLESPP 122
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P + + I L +S + DSG ++CT E K ++
Sbjct: 123 GSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 175
Query: 176 VLHGPSYYEQLPPK---------------ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220
VL + K + L + + + + +
Sbjct: 176 VLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE 235
Query: 221 VRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
V + + + + L L +A +G +++ GK+ + ++V
Sbjct: 236 VSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT 295
Query: 280 GLPGGVQVVEVHKTSATIQWT 300
L + TS + +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLS 316
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 96.0 bits (238), Expect = 7e-22
Identities = 29/292 (9%), Positives = 64/292 (21%), Gaps = 65/292 (22%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
LT T E+ + L++ L + D +
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQ-DSGTWT 158
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS-------------FKKRPLESETYAGEGGNVTIFCN 112
C K + VL + + F + G +
Sbjct: 159 CTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE 218
Query: 113 PEAAPKP--KFVWKKDGNIIGSGGRRKIFE-------NGNLLISPVSRDDSGIYSCTATN 163
++ K F K + + + + L + SG +
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 164 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223
G + L+V+ L C +
Sbjct: 279 KTGKLHQEVNLVVMRATQ--------------LQKNLTCEVWGPTSPKLMLSLKLENKEA 324
Query: 224 GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ +AG ++C++ + G++ ++ + V
Sbjct: 325 KV--------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 92.9 bits (230), Expect = 9e-21
Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 44/210 (20%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 140
+G V + C +F WK I G +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 141 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
N L+I + +DS Y C + + + +L+V + + ++L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTA-----NSDTHLLQGQSLT 115
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
L + V G L ++ D+G + C
Sbjct: 116 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 160
Query: 260 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
V K+ K ++V V E
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKE 190
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 121 bits (303), Expect = 1e-30
Identities = 42/296 (14%), Positives = 76/296 (25%), Gaps = 40/296 (13%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDP 61
+TW G + + ++ ++R D + + L E D
Sbjct: 50 VTWQKSTNGSKQNVAIYNPS----MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELE-DE 104
Query: 62 AMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAG---EGGNVTIFCN-PEAA 116
+Y C R S L V+ KP+ ++ A + + C
Sbjct: 105 GVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGK 163
Query: 117 PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
P W+ + + P +C +
Sbjct: 164 PPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES 223
Query: 172 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD-----VAYIWTHNGVRIGNM 226
L V + P + +++L C A D Y WT
Sbjct: 224 LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA------DANPPATEYHWTTLN------ 271
Query: 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
L + L +++ AG Y C + +G S + V + L
Sbjct: 272 --GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALE 325
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 18/123 (14%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPN 235
PS Q+ + ++ L CS W + +
Sbjct: 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 236 INIDG---------------GLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPP 279
+++ G + ++ D G Y C + G ++ + V P
Sbjct: 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131
Query: 280 GLP 282
Sbjct: 132 TNW 134
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-30
Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 37/202 (18%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C A G P V Y WF+ + + + + L ++ + D Y CR
Sbjct: 39 CCRATGHPFVQYQWFKMNKEIPNGN------------TSELIFNAVHVK-DAGFYVCRVN 85
Query: 70 NQLKTRYSS-AQLRVLTL--------------KPSFKKRPLESETYAGEGGNVTIFCNPE 114
N +S +QL V + K P + G + + C
Sbjct: 86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP--TSQKLMPGSTLVLQCVAV 143
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
+P P + W K+ + ++ ++ V + G Y C N +SK
Sbjct: 144 GSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
Query: 175 IVLHGPSYYEQLPPKITIAAHR 196
I++ + P +
Sbjct: 198 IIIDELNNLGH-PDNKEQTTDQ 218
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-29
Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 40/220 (18%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147
P G V + C P ++ W K I +G L+ +
Sbjct: 19 SKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFN 70
Query: 148 PVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQL--------------PPKITI 192
V D+G Y C N + S+ +L V P +++ P +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 193 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252
L L+C A + Y W N + + + L +
Sbjct: 131 MPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------KKLYMVPYVDLEH 176
Query: 253 AGEYECVVKSTVGKI-STKTTVIVEGPPGL--PGGVQVVE 289
G Y C V + S K +I++ L P +
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 9e-13
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C A G P Y WF+N L ET + + Y++ E Y
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLTHET------------KKLYMVPYVDLE-HQGTYW 181
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 103
C N ++ S ++ + P E +
Sbjct: 182 CHVYNDRDSQDSKKVEIIIDELNNL-GHPDNKEQTTDQ 218
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 9e-30
Identities = 40/182 (21%), Positives = 59/182 (32%), Gaps = 24/182 (13%)
Query: 6 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+T C + W +NG L R + I E D
Sbjct: 20 PVTLQCNLTSSSHTLMYSYWTKNGVEL--------TATRKNASNMEYRINKPRAE-DSGE 70
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
Y C + + ++A + V P EG + ++C P P+++W
Sbjct: 71 YHCVY-HFVSAPKANATIEVKA-APDITGHK--RSENKNEGQDAMMYCKSVGYPHPEWMW 126
Query: 124 KKDGNII-----GSGGRRKIFENGN---LLISPVS-RDDSGIYSCTATNVHGMDESKGRL 174
+K N + S GR I N L I + +D G Y C ATN G L
Sbjct: 127 RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
Query: 175 IV 176
V
Sbjct: 187 RV 188
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-26
Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 13/194 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNL 144
+P VT+ CN ++ W K+G + + RK N
Sbjct: 3 EPRIVTSE--EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT--RKNASNMEY 58
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I+ +DSG Y C V ++ + V ++ + C +
Sbjct: 59 RINKPRAEDSGEYHCVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFA-DAGEYECVVK 261
+ +W + N I L I N D GEYEC
Sbjct: 117 VGYPHPEW--MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174
Query: 262 STVGKISTKTTVIV 275
+++G S T + V
Sbjct: 175 NSIGSASVSTVLRV 188
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-29
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 23/196 (11%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 142
P + +G V + C+ E +P W KDG ++ + + I G
Sbjct: 3 LKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 202
L + V R D+G Y C + + S+ + + G ++ P + + + QL C
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120
Query: 203 SAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
A E + + W +IG + +L +T + + + C
Sbjct: 121 EAVGPPEPVTIV--WWRGTTKIGGPAPSPS----------VLNVTGVT--QSTMFSCEAH 166
Query: 262 STVGKISTKT-TVIVE 276
+ G S++T TV ++
Sbjct: 167 NLKGLASSRTATVHLQ 182
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-27
Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 25/181 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN------VLTIRYLNPER 59
+ C G+ + W ++G +++ D+ +I + L+++ +
Sbjct: 19 PVKLNCSVEGMEEPDIQWVKDGA-------VVQNLDQLYIPVSEQHWIGFLSLKSVERS- 70
Query: 60 DPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
D Y C+ ++ +T S L V + P F P + + C P+
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTVEP--KDLAVPPNAPFQLSCEAVGPPE 127
Query: 119 PKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
P + W + IG +++ S ++SC A N+ G+ S+ + L
Sbjct: 128 PVTIVWWRGTTKIGGP------APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Query: 178 H 178
Sbjct: 182 Q 182
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 7e-29
Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 12/203 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGN-L 144
S + + V I C + + G R +++
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLR 201
I +G+ C A +S ++V+ G Y+ I ++ L L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 202 CSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEY 256
C+A TE + + + W + + + DL + L I + +D G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 257 ECVVKSTVGKISTKTTVIVEGPP 279
C S + T V V P
Sbjct: 187 TCAASSGLMTKKNSTFVRVHEDP 209
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 80.6 bits (198), Expect = 1e-17
Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 19/189 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C + ++ S + + + TI M
Sbjct: 26 TVVIPCLG-SISNLNVSLCARY---PEKRFVPDGNRISWDSKKGFTIPSYMI-SYAGMVF 80
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAP--KPKFV 122
C AK ++ S + V+ + S G + + C F
Sbjct: 81 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 140
Query: 123 WKKDGNIIGSG-----------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
W+ + G L I V+R D G+Y+C A++ ++
Sbjct: 141 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Query: 172 GRLIVLHGP 180
+ V P
Sbjct: 201 TFVRVHEDP 209
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 8e-29
Identities = 42/277 (15%), Positives = 74/277 (26%), Gaps = 26/277 (9%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
TC W R + E +D +VLT+ L D Y C
Sbjct: 18 FVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTF----SSVLTLTNLTGL-DTGEYFC 68
Query: 67 RAKNQL---KTRYSSAQLRVLTLKPSFKKRPLESET-YAGEGGNVTIFCNPEAAPKPKFV 122
+ + V F E + E +TI C P+
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
+ + + + Y C T +S + S
Sbjct: 128 LHEKKGDVALPVPY------DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSS 181
Query: 183 Y--EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM--DLNELETPNINI 238
+ + N+ L C E+++ WT+ G + + +
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNF--EWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+L I +A D+G Y C V +V + + +
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 2e-12
Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 44/244 (18%)
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSR 151
P E + C+ VW++ + + L ++ ++
Sbjct: 5 PPGPELVLNVSSTFVLTCSGS----APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTG 60
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYY------EQLPPKITIAAHRNLQLRCSAH 205
D+G Y CT + G++ + + + + P + I + + + C
Sbjct: 61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
+L G++ L G + Y C
Sbjct: 121 DPQL---VVTLHEKK---GDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDR 165
Query: 266 KI-STKTTVIVEGPPGLPGGVQVVEVH---------------KTSATIQWT-DGATNGRP 308
++ S V + V V+ +WT +GR
Sbjct: 166 EVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225
Query: 309 ITHY 312
+
Sbjct: 226 VEPV 229
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 7e-07
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED--QDRYFIQDNVLTIRYLNPERDPAM 63
++T C G V + W + P+ D D + ++L I E D
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE-DSGT 256
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSF 90
Y C + + + ++
Sbjct: 257 YTCNVTESVNDHQDEKAINITVVESGH 283
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-28
Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNII------------GSGG 134
F P G T+ C + P+ W +DG I+ G
Sbjct: 3 SPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
+ L I+ + D+G Y C H S+ + L G Y+ + P T+AA
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
+ L C A V +W + V L T + L + +
Sbjct: 121 NTPFNLSCQA-QGPPEPVDLLWLQDAV--------PLATAPGHGPQRSLHVPGLN--KTS 169
Query: 255 EYECVVKSTVGKISTKTTVIVEGPP 279
+ C + G +++T I P
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVLPQ 194
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-25
Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 25/193 (12%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSET-----LPLEDQDRYFIQDN-VLTIRYLNPE 58
T C+ W R+G++L +PL + ++ L I L
Sbjct: 19 TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS 78
Query: 59 RDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
D YQC +T S + + L P F + P + + C + P
Sbjct: 79 -DTGQYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEP--EDRTVAANTPFNLSCQAQGPP 134
Query: 118 KPKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+P + W +D + + +L + ++ + +SC A N G+ S+ I
Sbjct: 135 EPVDLLWLQDAVPLATAPGH--GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATIT 190
Query: 177 LHGPSYYEQLPPK 189
LP +
Sbjct: 191 --------VLPQQ 195
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-28
Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 35/215 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
F K L E E G V + E K + + I G + K+ + N
Sbjct: 3 DPFTKSELAVE--ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL--------------- 186
+ + + +D G Y+ + + S L+ ++
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 187 --PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 242
+ N+ L+C + +W + I + G+
Sbjct: 121 VEYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICT 172
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
L IT S DAG YE ++K GK ++ ++ E
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-25
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 31/191 (16%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNV----LTIRYLNPERDPA 62
W + ++ N + + + +Y + N + + L E D
Sbjct: 23 WMQAEKLSGNAKVNYIFNEK-------EIFEGPKYKMHIDRNTGIIEMFMEKLQDE-DEG 74
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG---------------EGGNV 107
Y + ++ T +S+ L K K+ + + + NV
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 134
Query: 108 TIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVH 165
+ C K VW KD I + + LLI+ S+ D+GIY +
Sbjct: 135 LLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 194
Query: 166 GMDESKGRLIV 176
G D+S+ +L+
Sbjct: 195 GKDKSRLKLVD 205
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKT 271
+ N I ++ + G+ + + D G Y ++ +
Sbjct: 35 VNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Query: 272 TVIVEGPPGLP 282
++ + L
Sbjct: 92 VLVGDVFKKLQ 102
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 34/194 (17%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
+ + V D+ +W NG + DR L I P D Y
Sbjct: 24 SFVTYYVEDLKVNWSHNGS-------AIRYSDRVKTGVTGEQIWLQINEPTPN-DKGKYV 75
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKK------------------RPLESETYAGEGGNV 107
+ + L ++ + L EG +
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATN 163
+ CN P P+ W K+ + + I+ VS DSG Y N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Query: 164 VHGMDESKGRLIVL 177
+G + S + V
Sbjct: 196 KYGSETSDFTVSVF 209
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 7e-27
Identities = 42/210 (20%), Positives = 68/210 (32%), Gaps = 31/210 (14%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISP 148
L+ ++ EG + ++ K W +G+ I R K G L I+
Sbjct: 9 TDLKIQS-TAEG--IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINE 65
Query: 149 VSRDDSGIYSCTATNVHGMDESKGRLIVL--------------------HGPSYYEQLPP 188
+ +D G Y + + L + LP
Sbjct: 66 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 125
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248
+TI + L L C+ + +V W N + D L+ I
Sbjct: 126 VVTIQEGKALNLTCNVWGDPPPEV--SWLKNEKALAQTDHCNLK--FEAGRTAYFTINGV 181
Query: 249 SFADAGEYECVVKSTVGKISTKTTVIVEGP 278
S AD+G+Y VVK+ G ++ TV V P
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSVFIP 211
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 190 ITIAAHRNLQLRCSAHTEELL--------DVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
+ +L+++ +A +L D+ W+HNG I D + + G
Sbjct: 3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVTGE 57
Query: 242 L--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
L+I + D G+Y + + + Q ++
Sbjct: 58 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 41/209 (19%), Positives = 63/209 (30%), Gaps = 16/209 (7%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHVIG 333
P P GVQ + + I W D + +Y + +TN +
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK---YKNAN 60
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 393
Y + L P + YEF V+ S + T P P +
Sbjct: 61 ATTLSYL------VTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELVPTSPPKDV 112
Query: 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453
+ +I P + N Y I++ + E ++ +I
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG-NRLTHQIQ 171
Query: 454 SEFYYTEYEVKVQAINDVGPGPESEVVTI 482
T Y K+QA N G GP SE V
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQF 200
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-13
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 383 ADKPYQAPSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
AD P P + + I+W LP+ ++ + YY + W+ + +
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA- 59
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
N + T YE V S
Sbjct: 60 ---NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 98
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-08
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 276 EGPPGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
E P P V E + + W + IT Y I T+ N+ + +
Sbjct: 102 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ I+ L + Y FK+ A N G G S
Sbjct: 162 VGNRLTHQ------IQE-LTLDTPYYFKIQARNSKGMGPMSEA 197
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 5e-27
Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 22/302 (7%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
E +T ++ L C E + W G+
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGS------HPSRWAG 57
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 298
G L + + D+G Y C G+ + ++V+ PP P + ++ +
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCE 114
Query: 299 WTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358
W + T ++ R NS + + + + + + S Y
Sbjct: 115 WGP-RSTPSLTTKAVLLVRKFQNSPA---EDFQEPCQYSQESQKFSCQLAVPEGDSSFYI 170
Query: 359 FKVIAGNELGYGE--PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 416
+ + +G + D P + LS++W+ +
Sbjct: 171 VSMCVASSVGSKFSKTQTFQGCGILQPDPPAN--ITVTAVARNPRWLSVTWQDPHSWNSS 228
Query: 417 APNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476
+ +++ +R + F + +K+ + I + + V+++A + G G
Sbjct: 229 FYRLRFELRYRAERSKTFTTWMVKDLQH----HCVIHDAWSGLRHVVQLRAQEEFGQGEW 284
Query: 477 SE 478
SE
Sbjct: 285 SE 286
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 8e-21
Identities = 53/317 (16%), Positives = 87/317 (27%), Gaps = 30/317 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL 145
P+ + + G +VT+ C E W GS R LL
Sbjct: 6 CPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
+ V DSG YSC G L+V P + + N+
Sbjct: 64 LRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLS--CFRKSPLSNVVCEWGPR 118
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE--CVVKST 263
+ L + + + + D+ Y V S+
Sbjct: 119 STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASS 178
Query: 264 VGKISTKTTVIV------EGPPGLPGGVQVVEVHKTSATIQWTD--GATNGRPITHYKII 315
VG +KT PP V V + ++ W D + +++
Sbjct: 179 VGSKFSKTQTFQGCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR 237
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
R + T+ + I + + ++ A E G GE S
Sbjct: 238 YRAERSKTF---------TTWMVKDLQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEW 287
Query: 376 SP-QYNTPADKPYQAPS 391
SP TP + P+
Sbjct: 288 SPEAMGTPWTESRSPPA 304
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 7e-27
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
T ++ + PG P + + + S T+Q+ G I+ + + A+
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEG--- 63
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
E ++ ++ + + + L P++ Y F++ N +G PS PS + T P
Sbjct: 64 EEWLLIHQLSNEPDARSMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP 121
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 29/216 (13%)
Query: 274 IVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
P P + VE + ++A +Q+ + AT G PI YK R W +
Sbjct: 4 AQADTPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY--- 59
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 392
+ + +I L P +TY ++ A N G GE S+ S ++ T + AP
Sbjct: 60 --DAKEASMEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKL 115
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 452
G G + ++ +P +Y + +R + +
Sbjct: 116 EGQMGEDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIR-----------LPS 162
Query: 453 PSEFY-------YTEYEVKVQAINDVGPGPESEVVT 481
S+ EYEV V A N G + V
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-13
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 264 VGKISTKTTVIVEG--PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN 321
+G+IS + + P P + S + G PI HY + R +
Sbjct: 93 LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRAL-S 151
Query: 322 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
S W D +++ L + YE V+A N+ G + + + T
Sbjct: 152 SEWKPEIRLPS--GSDHVM------LKS-LDWNAEYEVYVVAENQQGKSKAAHFVFR--T 200
Query: 382 PA 383
A
Sbjct: 201 AA 202
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
AD P +PS + ++ P P + YK WR + + S+
Sbjct: 4 AQADTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+V I T Y V++ A+N G G S
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 102
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 26/256 (10%)
Query: 34 TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 93
T + + N Y C N SS + V
Sbjct: 43 TFKTYFNEMVENKKNEWIQEKAEAT-RTGTYTCSNSN---GLTSSIYVFVRD-PAKLFLV 97
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR- 151
+ E + + C ++ + DG + + + I V R
Sbjct: 98 G--LPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA 155
Query: 152 DDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCS 203
C A S L V P +++ + C+
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA----IPVVSVPETSHLLKKGDTFTVVCT 211
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFADAGEYECV 259
+ V +W + ++ + + + L I++A D+G + C
Sbjct: 212 I-KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270
Query: 260 VKSTVGKISTKTTVIV 275
+T G + TT+ V
Sbjct: 271 ANNTFGSANVTTTLKV 286
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 90.9 bits (225), Expect = 1e-20
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 20/186 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMY 64
D C YS L + +TI+ +
Sbjct: 108 DALVRCPLTDPQVSQYSLIECD------GKSLPTDLTFVPNPKAGITIKNVKRAYHRLCV 161
Query: 65 QCRAKNQLKTRYSSA-QLRVLTLKPSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKP-KF 121
+C A+ +S L+V + + + +G T+ C +
Sbjct: 162 RCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNS 221
Query: 122 VWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
+W K + K L IS DDSG++ C A N G
Sbjct: 222 MWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVT 281
Query: 172 GRLIVL 177
L V+
Sbjct: 282 TTLKVV 287
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 15/198 (7%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLI 146
P+ K + G +V + C E + W + + + + L +
Sbjct: 159 PTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 147 SPVSR-DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
+ V+ + +C A N G E ++ V + T + + S
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVD 271
Query: 206 TEELLDVAYIWTHNGVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVK 261
+ + W NG + N + G L + + + G Y +
Sbjct: 272 GQPAPSLR--WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 262 STVGKISTKTTVIVEGPP 279
+ G+ S P
Sbjct: 330 NPFGQASASIMAAFMDNP 347
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 9e-23
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 22/185 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D+ C+ G W ++ + LT+ + + +
Sbjct: 175 DVLLRCQVEGRGLEQAGWILTELEQSATV-----MKSGGLPSLGLTLANVTSDLNRKNVT 229
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N + S Q+ V +E I + + P P W
Sbjct: 230 CWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH-------WCIPFSVDGQPAPSLRWLF 282
Query: 126 DGNII----------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
+G+++ + +G L ++ + ++G Y+ A N G +
Sbjct: 283 NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 342
Query: 176 VLHGP 180
+ P
Sbjct: 343 FMDNP 347
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 6e-26
Identities = 38/214 (17%), Positives = 64/214 (29%), Gaps = 35/214 (16%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 139
E NV + + F W K GR I+
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNL 198
NG+LL ++ D G+Y+ T+ + R V + T+ ++
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 199 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L C ++ W N L E ++ + +L I DAGEY+C
Sbjct: 129 TLTCLSNDIG---ANIQWLFNSQS-----LQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 259 VVKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVH 291
+ + V + S + + P H
Sbjct: 181 EISNPVSVRRSNSIKLDIIFDP------HHHHHH 208
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 97.0 bits (241), Expect = 2e-23
Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 18/192 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL------------NSETLPLEDQDRYFIQDN-VLTI 52
++ + ++W++ N R I N L
Sbjct: 16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLF 75
Query: 53 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 112
+ + + D +Y ++ R + + + + + T E +VT+ C
Sbjct: 76 QMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK-ELDSVTLTCL 133
Query: 113 PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESK 171
W + + R + +N ++L I P+ R+D+G Y C +N + S
Sbjct: 134 SND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192
Query: 172 G-RLIVLHGPSY 182
+L ++ P +
Sbjct: 193 SIKLDIIFDPHH 204
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-26
Identities = 50/307 (16%), Positives = 83/307 (27%), Gaps = 31/307 (10%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNELETPNINIDGGLLEI 245
+ ++ C+ E L+ + G + L
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-T 304
+ + G C + + + P ++WT +
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDS 359
Query: 305 NGRPITHYKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
GR Y + W + V E R ++ + L P Y F V
Sbjct: 360 GGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD-LEPHMNYTFTVE 418
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 422
A N + S P ++ G LS+SW P Q + Y
Sbjct: 419 ARNGVSGLVTSRSFRT--ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP--QQSRVWKY 474
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 475
++ +RKK D+ + V R T Y V+VQA+ G G
Sbjct: 475 EVTYRKKGDSNSYN------------VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Query: 476 ESEVVTI 482
S+V
Sbjct: 523 GSKVHEF 529
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 4e-12
Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 55/313 (17%)
Query: 111 CNPEAAPKPKFVWKKDGNIIGSGGRRK------------------------IFENGNLLI 146
P +P+ DG + G+
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--- 203
G SC + P P A ++
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP----SAPHYLTAVGMGAKVELRWTP 355
Query: 204 -AHTEELLDVAYI--WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD---AGEYE 257
+ D+ Y G E GL T+ + +D Y
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTR-TSVTVSDLEPHMNYT 414
Query: 258 CVVKST--VGKISTKTTVIV---EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 312
V++ V + T + P V++ TS ++ W+ + Y
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKY 474
Query: 313 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 372
++ R +S +NV T ++++ L P +TY +V A + G G
Sbjct: 475 EVTYRKKGDSNSYNVRR----------TEGFSVTLDD-LAPDTTYLVQVQALTQEGQGAG 523
Query: 373 SSPSPQYNTPADK 385
S ++ T + +
Sbjct: 524 SKVH-EFQTLSPE 535
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 9e-26
Identities = 52/277 (18%), Positives = 85/277 (30%), Gaps = 43/277 (15%)
Query: 10 TCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
C G+ + + LN D ++ + C
Sbjct: 24 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA-----KASVSVTAEDEGTQRLTC 78
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+++ + + + + P+ + E EG VT+ C EA P+ K +
Sbjct: 79 AVILGNQSQETLQTVTIYS-FPAPNVILTKPE--VSEGTEVTVKC--EAHPRAK--VTLN 131
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGR---LIVLHGPS- 181
G G R LL+ D+ +SC+AT V G K + L VL+GP
Sbjct: 132 GVPAQPLGPR-----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL 186
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
P T + C A L +G
Sbjct: 187 DERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPLP---------------- 228
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ E + G Y C +ST G+++ + TV V P
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 4e-21
Identities = 38/177 (21%), Positives = 53/177 (29%), Gaps = 31/177 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++T CEA VT + L + PE + +
Sbjct: 115 EVTVKCEAHPRAKVTLNGVPAQPLG----------------PRAQLLLKATPEDNGRSFS 158
Query: 66 CRAKN----QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
C A QL + + +LRVL P +R E T C P P+
Sbjct: 159 CSATLEVAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
KDG G V+RD G Y C A + G + + VL
Sbjct: 218 KCLKDGTFPLPIGE----------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 28/177 (15%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC + WF NG L ++ L I E D Y+
Sbjct: 22 VTLTCNGNNFFEVSSTKWFHNGSLSEE-------------TNSSLNIVNAKFE-DSGEYK 67
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ + S + + + S EG + + C+ K ++
Sbjct: 68 CQHQQ----VNESEPVYLEVFSDWLLLQA--SAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGP 180
KDG + EN N+ I+ + +DSG Y CT ES+ + V+ P
Sbjct: 122 KDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 2e-21
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 27/195 (13%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLL 145
KP P +G NVT+ CN + W +G++ N +L
Sbjct: 4 KPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLN 54
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
I +DSG Y C V+ + L V + + + L LRC
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNESEPV--YLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGW 110
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
+ I+ +G + + + ITNA+ D+G Y C K
Sbjct: 111 RNWDV-YKVIYYKDGEALKYWY-----------ENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 266 KISTKT-TVIVEGPP 279
++ + V P
Sbjct: 159 DYESEPLNITVIKAP 173
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 5e-25
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFN 326
++ PP P + +TS + W G PI +++ + W
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWIL 66
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ + I L +Y+F+V A N LG EPS+PS Y P
Sbjct: 67 ATSAIPPSR-------LSVEITG-LEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 46/311 (14%), Positives = 96/311 (30%), Gaps = 52/311 (16%)
Query: 6 DLTWTCEAFG----VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
T T G ++TY+W ++ + + T LT+ E +
Sbjct: 19 GFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT-------------ATLTVADATSE-NA 64
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN--------P 113
Y+ ++ +++ ++ Y +V + P
Sbjct: 65 GSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTP 124
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173
+ + W K ++I + ++ I + D +G+Y+ +
Sbjct: 125 ADNYELHYSWSKGEDVIDT--------TQDITIQEFTADKNGVYTVKVWGESEDSAASAS 176
Query: 174 LIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLD--------VAYIWTHNG---- 220
++ +Q + T+A + L + + D + Y W
Sbjct: 177 TKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQL 236
Query: 221 --VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
IG+ LE +I DG L +A++ D ++ CV K TV V
Sbjct: 237 SPTLIGSEVGEALEGFSITPDGHLF-KESATYDDTAKFWCVAKLYQQ--IEDETVEVAAS 293
Query: 279 PGLPGGVQVVE 289
++VV+
Sbjct: 294 TSRKCSMEVVK 304
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 6e-21
Identities = 23/234 (9%), Positives = 61/234 (26%), Gaps = 38/234 (16%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPK---FVWKKDGNIIGSGGRRKIFEN 141
+ + + + AG+G T+ P P + W KD +
Sbjct: 1 MAFTVSIQSNKRCFLAGDG--FTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------T 51
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQ 199
L ++ + +++G Y T + M + + ++ P +++ +++
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 200 LRCSAHT------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 253
L + + ++ Y W+ I + I +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------------TQDITIQEFTADKN 157
Query: 254 GEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVEVHKTSATIQWTDGAT 304
G Y V + + + ++ +
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 5e-12
Identities = 25/195 (12%), Positives = 68/195 (34%), Gaps = 43/195 (22%)
Query: 3 NQADLTWTCEAFG------VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN 56
+L T + G ++ YSW + +++++ +TI+
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ--------------DITIQEFT 153
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC----- 111
+ +Y + + + +SA +++ + + +ES+T G +++
Sbjct: 154 AD-KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKT-VALGNEISLNYVVSED 211
Query: 112 -----NPEAAPKPKFVW--KKDGNII---------GSGGRRKIFENGNLLISPVSRDDSG 155
+ K+ W +++G + + I +G+L + DD+
Sbjct: 212 IVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTA 271
Query: 156 IYSCTATNVHGMDES 170
+ C A +++
Sbjct: 272 KFWCVAKLYQQIEDE 286
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 9e-25
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNST 323
G + + PG P V++ +V + + WT +G IT Y I +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
WF V EH R A+I LV + Y F+V + N G E ++ + + A
Sbjct: 64 WFTVIEHY---------HRTSATITE-LVIGNEYYFRVFSENMCGLSEDATMTKESAVIA 113
Query: 384 --DKPY 387
K Y
Sbjct: 114 RDGKIY 119
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-24
Identities = 32/115 (27%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P + V E TS T+ W G N P+T+Y I R F + V
Sbjct: 4 GSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 389
SI L P+S Y F+V+A N +G G PS P
Sbjct: 62 R---------YSIGG-LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++++W+ + P YY I +R E V + + Y
Sbjct: 24 VTLTWDS----GNSEPVTYYGIQYRAAGTEGPFQE-----------VDGVATTRYSIGGL 68
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
++EY +V A+N +G GP SE V
Sbjct: 69 SPFSEYAFRVLAVNSIGRGPPSEAVRA 95
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 3e-24
Identities = 51/334 (15%), Positives = 95/334 (28%), Gaps = 44/334 (13%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDN-------VLTIRY 54
+ + + + G +S + R + + I
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE-----SETYAGEGGNVTI 109
L D Y C+A + + +A L+VL +P L E NV
Sbjct: 192 LRLS-DAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAK 250
Query: 110 F-CNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-----LLISPVSRDDSGIYSCTAT 162
F C + V G GR + ++I+ + ++D+G Y C A
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310
Query: 163 NVHGMDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219
+ + E S + P + A ++ + C + +E + Y W
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY-WCLW 369
Query: 220 GVRIGNMDLNELET---------------PNINIDGGLLEITNASFADAGEYECVVKSTV 264
+++ + + + DAG Y C+
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 298
+T I+EG P L V V + +
Sbjct: 430 LWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP 463
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 99.3 bits (246), Expect = 2e-22
Identities = 47/327 (14%), Positives = 88/327 (26%), Gaps = 48/327 (14%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN------VLTIRYLNPERDPA 62
+ C + G+ + R + + I L E D
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRA------PAFEGRILLNPQDKDGSFSVVITGLRKE-DAG 303
Query: 63 MYQCRAKNQLKTRYSSAQL-RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A + + + S L + + G +V + C
Sbjct: 304 RYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSI 363
Query: 122 VW--KKDGNIIGSG---------------GRRKIFENGN-----LLISPVSRDDSGIYSC 159
+ +G G GR + E ++++ ++ D+G Y C
Sbjct: 364 KYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWC 423
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWT 217
+ I + ++P +T L++ C + Y W
Sbjct: 424 LTNGDTLWRTTVE--IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN 481
Query: 218 HNGVRIGNMDLNELETPNINIDGGL----LEITNASFADAGEYECVVKS-TVGKISTKTT 272
+ G + +N D L + + AD G Y C VK +
Sbjct: 482 NTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVY 541
Query: 273 VIV-EGPPGLPGGVQVVEVHKTSATIQ 298
V V E V + + +A +
Sbjct: 542 VAVEERKAAGSRDVSLAKA--DAAPDE 566
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 88.9 bits (219), Expect = 6e-19
Identities = 52/303 (17%), Positives = 85/303 (28%), Gaps = 50/303 (16%)
Query: 7 LTWTC---EAFGVPDVTYSWFRNGELLNSETL-------PLEDQDRYFIQDN------VL 50
++ TC W R G TL + R + + V+
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 51 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 110
I L+ + D Y+C + ++ P G VTI
Sbjct: 78 NIAQLSQD-DSGRYKCGLGINSRGLSFDVS-LEVSQGPGLLNDT--KVYTVDLGRTVTIN 133
Query: 111 CNPEAA--PKPKFVWKKDGNII------------GSGGRRKIFENG------NLLISPVS 150
C + K K ++K+ G GR ++ G +++I+ +
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ--------LPPKITIAAHRNLQLRC 202
D+G Y C A + ++ L VL + + C
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ E DV + G R + L P + IT DAG Y C S
Sbjct: 254 RQSSGENCDV--VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 263 TVG 265
Sbjct: 312 DGQ 314
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 65.8 bits (159), Expect = 1e-11
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 35/225 (15%)
Query: 97 SETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIG--------------SGGRRKIF 139
E + EG +V+I C + W + G G GR +
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 140 ENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
+ I+ +S+DDSG Y C S + + T+
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSR-GLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPN------INIDGG-----L 242
R + + C TE ++ G+ + D + PN ++I G
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 287
+ I +DAG+Y C + V P +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 64.6 bits (156), Expect = 3e-11
Identities = 25/206 (12%), Positives = 52/206 (25%), Gaps = 36/206 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELL----------NSETLPLEDQDRYFIQDN------VL 50
+ C + ++ E + + + + R + + +
Sbjct: 349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTV 408
Query: 51 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 110
+ L D Y C R + + + + A G + +
Sbjct: 409 ILNQLTSR-DAGFYWCLTNGDTLWRTT----VEIKIIEGEPNLKVPGNVTAVLGETLKVP 463
Query: 111 CNPEAA----PKPKFVWKKDGNII------GSGGRRKIFENGN----LLISPVSRDDSGI 156
C+ K W G G + + L ++ V+R D G
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 157 YSCTATNVHGMDES-KGRLIVLHGPS 181
Y C H E+ + V +
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKA 549
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 4e-24
Identities = 46/281 (16%), Positives = 70/281 (24%), Gaps = 43/281 (15%)
Query: 6 DLTWTCEAFG---VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
T C G V + + LN D D
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS-------AKASVSVTAEDEG 257
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
+ L + V T+ + ++ EG VT+ C K
Sbjct: 258 TQRLTCAVILGNQSQETLQTV-TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLN 316
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG----MDESKGRLIVLH 178
+ LL+ D+ +SC+AT L VL+
Sbjct: 317 GVPAQ---------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 367
Query: 179 GPSYYE-QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
GP E P T + C A +G
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGN--PLPELKCLKDG----------------T 409
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ E + G Y C +ST G+++ + TV V P
Sbjct: 410 FPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 1e-17
Identities = 41/329 (12%), Positives = 75/329 (22%), Gaps = 42/329 (12%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC + ET PL ++ +N L+ ++ + C
Sbjct: 17 VLVTCSTSCDQPMLLGI---------ET-PLPKKELLLPGNNRKVYE-LSNVQEDSQPMC 65
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA---APKPKFVW 123
+ + L V + PL S G+ N+T+ C E V
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--NLTLRCQVEGGAPRANLTVVL 123
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--------RLI 175
+ + + +SC + +L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETP 234
P+ QL + + CS + A + R+ ++
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 243
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVH--- 291
+ A C V T TV + P + EV
Sbjct: 244 SAKA----SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299
Query: 292 ----------KTSATIQWTDGATNGRPIT 310
+ T+ G
Sbjct: 300 EVTVKCEAHPRAKVTLNGVPAQPLGPRAQ 328
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 1e-11
Identities = 38/309 (12%), Positives = 69/309 (22%), Gaps = 26/309 (8%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDD 153
S+ GG+V + C+ + ++ G RK++E + +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYE-------LSNVQE 59
Query: 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDV 212
C + G +K L V P E P +NL LRC ++
Sbjct: 60 DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 213 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
+ + E + + C + + +
Sbjct: 120 TVVLLRGEKELKR------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 273 VIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEH 330
P +Q + T + T + S
Sbjct: 174 ENTSAPY----QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD 229
Query: 331 VIGKEVDRYTGRK---EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
Y +AS+ T E Y+ PA
Sbjct: 230 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Query: 388 QAPSRIGGG 396
+ G
Sbjct: 290 LTKPEVSEG 298
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 6e-24
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 33/186 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE-------TLPLEDQDRYFIQ-------DNVLT 51
+ TC A + + W + ++ P + DR + + L
Sbjct: 12 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 71
Query: 52 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
I+ L E D Y C ++Q + QL V L + S+T+ +G ++T+
Sbjct: 72 IKNLKIE-DSDTYICEVEDQKEE----VQLLVFGLTAN-------SDTHLLQGQSLTLTL 119
Query: 112 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
P + + I L +S + DSG ++CT E K
Sbjct: 120 ESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 172 GRLIVL 177
++VL
Sbjct: 173 IDIVVL 178
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 6e-21
Identities = 27/200 (13%), Positives = 48/200 (24%), Gaps = 44/200 (22%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 140
+G V + C +F WK I G +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 141 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
N L+I + +DS Y C + + + + ++L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQGQSLT 116
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
L + V G L ++ D+G + C
Sbjct: 117 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 161
Query: 260 VKSTVGKISTKTTVIVEGPP 279
V K+ K ++V
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQ 181
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 6e-09
Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 14/84 (16%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
LT T E+ + L++ L + D +
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQ-DSGTWT 159
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS 89
C K + VL + +
Sbjct: 160 CTVLQNQKKVEFKIDIVVLAFQKA 183
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-23
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 263 TVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 320
+ G + V P P + V + + + WT P+ Y + N
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSEN- 60
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
N+ W + V K +++ LVP +Y+F++ A N++G G+ S + + +
Sbjct: 61 NAPWTVLLASVDPKAT-------SVTVKG-LVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 381 TPADKP 386
P P
Sbjct: 113 LPESGP 118
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 2e-23
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN 106
D + + L D YQC+ K L VL KPS + ++ G +
Sbjct: 83 DASINVTNLQLS-DIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEE--IGND 138
Query: 107 VTIFCNPEA-APKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164
+ C P+ + +F W+K + + + + S + SG YSCT N
Sbjct: 139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 165 HGMDESKGRLIVLHGPS 181
G D+ RL V+ PS
Sbjct: 199 VGSDQCMLRLDVVP-PS 214
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 5e-21
Identities = 35/214 (16%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 96 ESETYAGEGGNVTIFC----NPEAAPKPKFVWKKDGNIIGSG------------------ 133
E +G + C +PE W +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 134 ---GRRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 184
GR + ++ ++ + D G Y C G+ K L VL PS
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG-T 125
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ + + +L+C E L + + W + ++
Sbjct: 126 RCFVDGSEEIGNDFKLKCEP-KEGSLPLQFEWQKLSD-----SQTMPTPWLAEMTSPVIS 179
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ NAS +G Y C V++ VG + V P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
+ ++ + +TN +D G Y+C VK G + K + V P
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGS 132
Query: 290 VHKTSATIQWTDGATNGRPITHYK 313
+ + G ++
Sbjct: 133 EEIGN-DFKLKCEPKEGSLPLQFE 155
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 3e-23
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFN 326
S+ + PG P QV +V K S T+ W G P + Y I + +++W
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
V+ HV + YT + L P + Y F V A N G +PS S T P
Sbjct: 65 VANHV---KTTLYT------VRG-LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 9e-23
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 27/167 (16%)
Query: 7 LTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC+ P+ + WF NG L+ + T P D Y
Sbjct: 22 VTLTCQGARSPESDSIQWFHNGNLIPTHTQPS----------YRFKAN----NNDSGEYT 67
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ + L VL + + P EG + + C+ P K +
Sbjct: 68 CQTGQT--SLSDPVHLTVLF-EWLVLQTP---HLEFQEGETIMLRCHSWKDKPLVKVTFF 121
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
++G + I + SG Y CT + + SK
Sbjct: 122 QNGKSQKFSH-----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSK 163
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 3e-20
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 33/195 (16%)
Query: 83 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFEN 141
VL L+P + +VT+ C +P+ W +GN+I +
Sbjct: 6 VLKLEPP--------WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT-------HT 50
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 201
+ +DSG Y+C D L VL + P + + LR
Sbjct: 51 QPSYRFKANNNDSGEYTCQTGQTSLSDPV--HLTVLFEWLVLQ--TPHLEFQEGETIMLR 106
Query: 202 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
C + ++ L V + NG I A+ + +G+Y C
Sbjct: 107 CHSWKDKPL-VKVTFFQNGKSQKFSH-----------LDPTFSIPQANHSHSGDYHCTGN 154
Query: 262 STVGKISTKT-TVIV 275
S+K T+ V
Sbjct: 155 IGYTLFSSKPVTITV 169
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
PP I + ++ L C + W HNG I
Sbjct: 11 PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPT-------------HTQPSYRF 56
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
A+ D+GEY C T +S + V
Sbjct: 57 KANNNDSGEYTCQTGQTS--LSDPVHLTVLFEW 87
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 13/75 (17%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ C ++ P V ++F+NG+ ++ D +I N Y
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQ-----------KFSHLDPTFSIPQANHS-HSGDY 149
Query: 65 QCRAKNQLKTRYSSA 79
C S
Sbjct: 150 HCTGNIGYTLFSSKP 164
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 2e-22
Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 30/184 (16%)
Query: 6 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ TC + W + G +L + LP + + +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------GQKTEFKVDSDD-QWGE 63
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFV 122
Y C + +A +++ P K S + EG + C E+ P +
Sbjct: 64 YSCVFLPE---PMGTANIQLHG-PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 123 WKKDGNII------GSGGRRKIFENGN---LLISPVSR-DDSGIYSCTATNVHGMDESKG 172
W K + GS R + + L I ++ D G Y C T+ G D++
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 173 RLIV 176
L V
Sbjct: 178 TLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 7e-21
Identities = 34/183 (18%), Positives = 54/183 (29%), Gaps = 15/183 (8%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
T G + + C+ + W K G ++ S D G
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDDQWGE 63
Query: 157 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 216
YSC + I LHGP + + I L C + + + + W
Sbjct: 64 YSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAW 118
Query: 217 THNGVRIGNMDLNELE---TPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTT 272
+N E + + L I N + D G+Y C S+ G T
Sbjct: 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 178
Query: 273 VIV 275
+ V
Sbjct: 179 LRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 1e-09
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 6 DLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERD 60
C++ VP VT ++W++ + + L + R+F+ + L I LN E D
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDS-EDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLT 85
P Y+C + + + LRV +
Sbjct: 159 PGQYRCNGTSSKGSDQAIITLRVRS 183
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 43/189 (22%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ L CS + + W GV + + G E S GEY
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVL----------KEDALPGQKTEFKVDSDDQWGEY 64
Query: 257 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGAT-----NGRPITH 311
CV + + + + GPP V+ K+S I + A P
Sbjct: 65 SCVF---LPEPMGTANIQLHGPP-------RVKAVKSSEHINEGETAMLVCKSESVPPV- 113
Query: 312 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS---------IENVLVPWSTYEFKVI 362
T+W W+ +++ ++ R S IEN+ + +++
Sbjct: 114 ------TDW--AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
Query: 363 AGNELGYGE 371
+ G +
Sbjct: 166 GTSSKGSDQ 174
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 5e-22
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 324
G + + P +P ++ K S T+QW + NG I ++ + +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63
Query: 325 FNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
F Y G K+ I L P +F++ A N+ G S Y +
Sbjct: 64 F----------CQCYMGSQKQFKITK-LSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Query: 384 DKP 386
P
Sbjct: 113 SGP 115
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-05
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 32/127 (25%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-----LSISWEPLPREKQNAPNIYY 422
G S T + +P P+ +I + L++ W+ + +
Sbjct: 1 GSSGSSGAEIFT-TLSCEP-DIPNPP-----RIANRTKNSLTLQWKA--PSDNGSKIQNF 51
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 475
+ W + + + + + ++ A ND G
Sbjct: 52 VLEWDEGKGNGEFCQ-----------CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
Query: 476 ESEVVTI 482
SE V
Sbjct: 101 FSEEVLY 107
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 5e-22
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLL 145
P + P + G + C P P W K+G G R I E G L
Sbjct: 8 PPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
I + D+G Y+C AT+ G L V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-11
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQC 66
C+A G P SW + G R IQ+ L I+ L D Y C
Sbjct: 27 LLKCKATGDPLPVISWLKEGFTFPGRD------PRATIQEQGTLQIKNLRIS-DTGTYTC 79
Query: 67 RAKNQLKTRYSSAQLRVL 84
A + SA L V
Sbjct: 80 VATSSSGETSWSAVLDVT 97
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-08
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
GP Q P T+A L+C A + L ++ W G P
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTF------PGRDPRAT 57
Query: 238 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
I + G L+I N +D G Y CV S+ G+ S + V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 7e-22
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-- 143
P F +P EG +V + C A P PK WK++ ++ + R ++++
Sbjct: 15 APMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 192
LLI V++ D+G Y+ +A N G+ RL V P T+
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV--------TARPNQTL 115
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W N + + + + N L I + + DAG Y + G + T +
Sbjct: 48 FWKRNNEMV-QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Query: 275 VEGPP 279
V P
Sbjct: 107 VTARP 111
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERDPA 62
C+ +P W RN E++ + DR + + L I+ +N + D
Sbjct: 34 KLECQISAIPPPKLFWKRNNEMVQ------FNTDRISLYQDNTGRVTLLIKDVNKK-DAG 86
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSF 90
Y A N+ + +L V +P+
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTA-RPNQ 113
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 9e-22
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
+ + +N+ A+ + KP F K + EG C E P P+
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHV-KPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEV 73
Query: 122 VWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+W KD N + +I + L IS V DD Y+C A N G L+V
Sbjct: 74 MWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV- 132
Query: 178 HGPSYYEQLPPKIT 191
+ +
Sbjct: 133 ETMGKEGEGEGEGE 146
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 8e-11
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 146 ISPVS-RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-------ITIAAHRN 197
IS +S R SG + N + ++ L + + P + +
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSA 58
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEY 256
+ C +V +W + + +++ + +G L I+ D +Y
Sbjct: 59 ARFDCKVEGYPDPEV--MWFKDDNPVKESRHFQIDY---DEEGNCSLTISEVCGDDDAKY 113
Query: 257 ECVVKSTVGKISTKTTVIVEGPP 279
C +++G+ + ++VE
Sbjct: 114 TCKAVNSLGEATCTAELLVETMG 136
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
+ C+ G PD WF++ P+++ + I + LTI + + D
Sbjct: 58 AARFDCKVEGYPDPEVMWFKDDN-------PVKESRHFQIDYDEEGNCSLTISEVCGD-D 109
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESE 98
A Y C+A N L +A+L V T+ + E E
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETM-GKEGEGEGEGE 146
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 9e-22
Identities = 42/211 (19%), Positives = 64/211 (30%), Gaps = 29/211 (13%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
G P W +G+ Y++ +S +
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWL--PPSGK-PMGYRVKYWIQGDSES---------EAHL 52
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397
+ + N L P+ YE KV A G G SS T + P P R+
Sbjct: 53 LDSKVPSVELTN-LYPYCDYEMKVCAYGAQGEGPYSSLVSCR-THQEVP-SEPGRL---- 105
Query: 398 GKIGDLS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV--V 450
+S +SW P E N Y++ + ND +K+ +
Sbjct: 106 -AFNVVSSTVTQLSWAE-PAE-TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRML 162
Query: 451 RIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
I + Y V+A N G GPE E +
Sbjct: 163 LIENLRESQPYRYTVKARNGAGWGPEREAII 193
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 4e-12
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
+ P PG + V T + W + A IT Y++ + + +
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 395
+ IEN L Y + V A N G+G T +P P
Sbjct: 156 NPKNR---MLLIEN-LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDI 211
Query: 396 GGGKI--GDLSISWEPLPRE 413
G+ S+ +
Sbjct: 212 PIVDAQSGEDYDSFLMYSDD 231
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 4e-10
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
AP + +W P + + Y++ + + D+E ++ L
Sbjct: 3 HMDLGAPQNPNAKAAGSRKIHFNWLP-----PSGKPMGYRVKYWIQGDSESEAHLLD--S 55
Query: 444 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
V + P Y +YE+KV A G GP S +V+
Sbjct: 56 KVPSVELTNLYP----YCDYEMKVCAYGAQGEGPYSSLVSC 92
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-21
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
KP +T P+P +W KDG I GG+ K+ E+
Sbjct: 6 KPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I DSG+Y+CT N G S +L +
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-11
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ +A G P T W ++G+ + +Y + ++ L I + D
Sbjct: 23 VAKFAVKATGEPRPTAIWTKDGK-------AITQGGKYKLSEDKGGFFLEIHKTDTS-DS 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
+Y C KN + SS +L +
Sbjct: 75 GLYTCTVKNSAGSVSSSCKLTI 96
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
IWT +G I + + D G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAIT-------QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Query: 271 TTVIVEG 277
+ ++
Sbjct: 92 CKLTIKA 98
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 1e-21
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLI 146
P ++ P G + C +P P +W+KDG ++ R K ENG L I
Sbjct: 9 PVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
D+G Y+C A+ G + V
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 4e-11
Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
+C A G P T W ++G L+++ R +N VL IRY D Y
Sbjct: 25 TFVLSCVATGSPVPTILWRKDGVLVST------QDSRIKQLENGVLQIRYAKLG-DTGRY 77
Query: 65 QCRAKNQLKTRYSSAQLRVL-TLKPSFKKRPLESETYAG 102
C A SA + V P RP +
Sbjct: 78 TCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-09
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGL 242
Q P T+A L C A + + +W +GV + + I + G+
Sbjct: 12 RQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLV------STQDSRIKQLENGV 63
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L+I A D G Y C+ + G+ + + V+
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 1e-21
Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 30/220 (13%)
Query: 265 GKISTKTTVIVEGPPGL-PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323
S+ V+ +GP P ++ +V TS + QWT N +T Y++ +
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP--NV-QLTGYRVRVTPKEKTG 62
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
KE++ + L+ + YE V A + P+
Sbjct: 63 PM--------KEINLAPDSSSVVVSG-LMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
P R ++ISW + +++ N T+K
Sbjct: 114 S----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQRTIK--P 162
Query: 444 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+V + P T+Y++ + +ND +
Sbjct: 163 DVRSYTITGLQP----GTDYKIYLYTLNDNARSSPVVIDA 198
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 1e-16
Identities = 43/234 (18%), Positives = 72/234 (30%), Gaps = 42/234 (17%)
Query: 255 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT 310
+YE V + + + +E P +V + +T+ TI W IT
Sbjct: 86 KYEVSVYALKDTLTSRPAQGVVTTLENVSP-PRRARVTDATETTITISWR--TKTE-TIT 141
Query: 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370
+++ A T + I +V YT I L P + Y+ + N+
Sbjct: 142 GFQVDAVPANGQTPI---QRTIKPDVRSYT------ITG-LQPGTDYKIYLYTLNDNARS 191
Query: 371 EPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIF 425
P T D APS + + + +SW+P A Y I
Sbjct: 192 SPVVIDAS--TAID----APSNL-----RFLATTPNSLLVSWQPP-----RARITGYIIK 235
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
+ K + G+ I TEY + V A+ +
Sbjct: 236 YEKPGSPP---REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-21
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
SS + PSF + EG + + C+ P P+ W +G I
Sbjct: 2 SSGSSGMEV-APSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I +D G Y+C A N G + V
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-11
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAM 63
D C G P +W NG+ + R + V L I+ PE D
Sbjct: 28 DFVLQCSVRGTPVPRITWLLNGQPIQY--------ARSTCEAGVAELHIQDALPE-DHGT 78
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
Y C A+N L SA + V
Sbjct: 79 YTCLAENALGQVSCSAWVTV 98
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 273
W NG I + G L I +A D G Y C+ ++ +G++S V
Sbjct: 44 TWLLNGQPIQ-------YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Query: 274 IV 275
V
Sbjct: 97 TV 98
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 91.0 bits (225), Expect = 3e-21
Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 10/193 (5%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
ES A G +V++ C+ P F W+ + +G L ++PVS +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 156 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAY 214
Y CTAT E ++ + + ++ + A + + ++CS +
Sbjct: 68 SYLCTATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG-EYECVVKSTVGK------- 266
+ + + E L D G C K + +
Sbjct: 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTV 186
Query: 267 ISTKTTVIVEGPP 279
+ V P
Sbjct: 187 RQAVKELQVYISP 199
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 6e-16
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 25/198 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++ TC G +SW + PL + + LT+ ++ + Y
Sbjct: 18 SVSLTCSTTGCESPFFSWRTQID------SPLNGKVTNEGTTSTLTMNPVSFG-NEHSYL 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFV 122
C A + + Q+ + + + G +T+ C + + +
Sbjct: 71 CTATCESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVKCSVADVYPFDRLEID 127
Query: 123 WKKDGNIIGSG-----GRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDES--KGR 173
K +++ S RK E + + +PV D + C A +S R
Sbjct: 128 LLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187
Query: 174 LIVLHGPSYYEQLPPKIT 191
V Y PK T
Sbjct: 188 QAVKELQVYI---SPKNT 202
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 8/96 (8%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
+ ++ L CS E W +D L +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFF--SWRTQ------IDSPLNGKVTNEGTTSTLTMN 59
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
SF + Y C K+ V + P P
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP 95
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 3e-21
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
TL +P EG + C+ + P P W + G ++ + R
Sbjct: 4 HHHHSSKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61
Query: 137 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ IS V D G YS N G E++ L +
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
++C+ G P T +W R G+ L R+ + + I + D
Sbjct: 31 SARFSCDTDGEPVPTVTWLRKGQ-------VLSTSARHQVTTTKYKSTFEISSVQAS-DE 82
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y +N + + L +
Sbjct: 83 GNYSVVVENSEGKQEAEFTLTI 104
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-09
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 185 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
L +I T+ + + C E + V W G + +++ T
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTV--TWLRKGQVLSTSARHQVTTTK-- 67
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
EI++ +D G Y VV+++ GK + T+ ++
Sbjct: 68 -YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 6e-21
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P+FK + EG +V + + PKP W ++ + RR E
Sbjct: 6 PTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I R D+G Y+C A N +G + + RL V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 4e-12
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
D+ + G P SW RN + + DQ R+ + L I D
Sbjct: 22 DVIMSIRVQGEPKPVVSWLRNRQPVR------PDQRRFAEEAEGGLCRLRILAAERG-DA 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C+A N+ R A+L V
Sbjct: 75 GFYTCKAVNEYGARQCEARLEV 96
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-08
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 185 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ PP ++ +++ + E V W N + E
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV--SWLRNRQPVRPDQRRFAEEA--- 57
Query: 238 IDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
+GGL L I A DAG Y C + G + + V G
Sbjct: 58 -EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 8e-21
Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 28/178 (15%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C+ P D + WF N L++S+ + I + D Y+
Sbjct: 25 VTLKCQGAYSPEDQSTQWFHNESLISSQA-------------SSYFIDAATVD-DSGEYR 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWK 124
C+ + T QL V + P E + + C+ K +
Sbjct: 71 CQTQL--STLSDPVQLEVHI-GWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPS 181
++G N + I + DSG Y C S+ ++ + G +
Sbjct: 125 QNGKGRKYFH-----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 5e-19
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 103 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
E +VT+ C +P+ W + ++I S + + I + DDSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDQSTQWFHNESLISS-------QASSYFIDAATVDDSGEYRCQT 73
Query: 162 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
D +L V G + P+ + LRC + L + NG
Sbjct: 74 QLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGK 128
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPG 280
I A+ D+G Y C + S + +
Sbjct: 129 GRKYFH-----------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Query: 281 LP 282
+
Sbjct: 178 VS 179
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 1e-20
Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 27/167 (16%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C+ P D + WF N L++S+ + I D Y+
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQA-------------SSYFIDAATVN-DSGEYR 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ T QL V + E + + C+ K +
Sbjct: 71 CQTNL--STLSDPVQLEVHIGWLLLQ----APRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
++G N + I + DSG Y C S+
Sbjct: 125 QNGKDRKYFH-----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-18
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 25/175 (14%)
Query: 103 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
E +VT+ C +P+ W + ++I S + + I + +DSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQT 73
Query: 162 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
D +L V G + P+ + LRC + L + NG
Sbjct: 74 NLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGK 128
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 275
I A+ D+G Y C + S + +
Sbjct: 129 DRKYFH-----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 6e-05
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P ++ ++ L+C D + W HN I + I
Sbjct: 14 PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS-------------QASSYFID 59
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ-WTDGATN 305
A+ D+GEY C + S + V L + V + ++ + T
Sbjct: 60 AATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117
Query: 306 GRPITHYK 313
+T+ +
Sbjct: 118 LHKVTYLQ 125
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 2e-20
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-----GSG 133
LR P + P S+ +G T+ C E P P W K G +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 134 GRRKIFENGNLLI-----SPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQ 185
R + +G+L SR D G+Y C A N G S L V ++
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-09
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER----DP 61
T C+A G P T W++ GE + ++ R + L + R D
Sbjct: 26 PATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH-RMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 62 AMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKK 92
+Y C A+N L S A L V
Sbjct: 85 GVYVCVARNYLGEAVSHDASLEVAAA-AHHHH 115
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-06
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 24/113 (21%)
Query: 184 EQLPPKIT-------IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNEL 231
E PP+I ++ L C A T W G R+ +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKGGERVETDKDDPR 58
Query: 232 ETPNINIDGGLL----EITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 279
+ G L S D G Y CV ++ +G+ + ++ V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-20
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 36/195 (18%)
Query: 98 ETYAGEGGNVT--IFCNPEAAPKPKFVWKKDGN------------IIGSGGRRKIFENGN 143
ET+ G ++ I + W+K + K+F+NG
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRC 202
L I + DD IY + + G + + + E++ PKI+ N L C
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTC-INTTLTC 122
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
D +G ++ + ++ + + + +++C +
Sbjct: 123 EV--MNGTDPELNLYQDGK-------------HLKLSQRVI-THKWTTSLSAKFKCTAGN 166
Query: 263 TVGKISTKTTVIVEG 277
V K S+ V
Sbjct: 167 KVSKESSVEPVSCPE 181
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-17
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 25/174 (14%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDN-VLTIRYLNPE 58
+L W + + E +++D Y + N L I++L +
Sbjct: 17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76
Query: 59 RDPAMYQCRAKNQLKTRYSSA--QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA 116
D +Y+ + L++ + + N T+ C
Sbjct: 77 -DQDIYKVSIYDTKGKNVLEKIFDLKIQ--------ERVSKPKISWTCINTTLTCEVMNG 127
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
P+ +DG + + + ++ + S + CTA N + S
Sbjct: 128 TDPELNLYQDG--------KHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESS 173
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 15/78 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ T TCE D + +++G+ L + A ++
Sbjct: 117 NTTLTCEVMNGTDPELNLYQDGKHLKL--------------SQRVITHKWTTS-LSAKFK 161
Query: 66 CRAKNQLKTRYSSAQLRV 83
C A N++ S +
Sbjct: 162 CTAGNKVSKESSVEPVSC 179
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-20
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+P F + P + EG + C P P W+ DG + K+ N
Sbjct: 9 RPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
L+I PV+ D+GIY+C ATN G + L+V S
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
C+ G+P SW +G+ P+ + + L I + D
Sbjct: 26 LCRMDCKVSGLPTPDLSWQLDGK-------PVRPDSAHKMLVRENGVHSLIIEPVTSR-D 77
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVL 84
+Y C A N+ S +L V
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVA 101
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-09
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 27/120 (22%)
Query: 179 GPSYYEQLPPKI-------TIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDL 228
G S P T+ + ++ C T +L W +G +
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL-----SWQLDGKPV----- 50
Query: 229 NELETPNINI---DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
+ + G+ L I + DAG Y C+ + G+ S ++V P
Sbjct: 51 --RPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 7e-20
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR-TNWNSTWFNVSEHV---I 332
G P V + S ++W +G PI +K+ R W ++++
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
K AS+ + L P TY F+++A + S+ S ++
Sbjct: 61 PKWNSELGKSFTASVTD-LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 6e-04
Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 14/90 (15%)
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYY----- 458
+ W P + +K+ +R +Q+ + F
Sbjct: 21 LRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDL 78
Query: 459 ---TEYEVKVQAINDVG---PGPESEVVTI 482
Y ++ A+ S +
Sbjct: 79 KPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 7e-20
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 80 QLRVL-TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 138
QL VL + P+ G ++ + C P P+ +W KD + +
Sbjct: 2 QLTVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 139 FE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
+ N NL I V ++D G+Y+C A +V G + + I+ + + T
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII--------EGAQEKT 105
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAM 63
+ +C A G P WF++ E L + ++D LTIR + E D +
Sbjct: 27 SIEVSCTASGNPPPQIMWFKDNE-------TLVEDSGIVLKDGNRNLTIRRVRKE-DEGL 78
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
Y C+A + L A +
Sbjct: 79 YTCQACSVLGCAKVEAFFII 98
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-11
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 184 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
E++ P I T + ++++ C+A + +W + + +E I
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-------VEDSGI 57
Query: 237 NI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ L I D G Y C S +G + I+EG
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 1e-19
Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 32/189 (16%)
Query: 97 SETYAGEGGNVT--IFCNPEAAPKPKFVWKKDGNIIGS----------GGRRKIFENGNL 144
+ G + I + W++ ++ G +I NG+L
Sbjct: 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I ++RDDSG Y+ T + +G L + E + + N L C
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYWECSNATLTCEV 119
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264
E DV + ++ + N ++C + V
Sbjct: 120 --LEGTDVELKLYQGKEHLRSLRQKTMSYQWTN--------------LRAPFKCKAVNRV 163
Query: 265 GKISTKTTV 273
+ S V
Sbjct: 164 SQESEMEVV 172
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 6e-15
Identities = 25/164 (15%), Positives = 44/164 (26%), Gaps = 21/164 (12%)
Query: 6 DLTWTCEAFGVPDVTYS--WFRNGELL---NSETLPLEDQDRYFIQDN-VLTIRYLNPER 59
+ F + D W R L+ + P + I N L I+ L +
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD- 71
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D Y + TR + L + + E N T+ C
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRI------LEMVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + + S + +S + + C A N
Sbjct: 126 ELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVN 161
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 8e-06
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ T TCE DV ++ E L S T+ Y A
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 153
Query: 63 MYQCRAKNQLKTRYSSAQLRV 83
++C+A N++ +
Sbjct: 154 PFKCKAVNRVSQESEMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 9e-06
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDG-GLLEITNASFAD 252
NL + T+++ +V W + L++ I G L+I N + D
Sbjct: 15 NLNIPNFQMTDDIDEV--RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDD 72
Query: 253 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE----------VHKTSATIQWTDG 302
+G Y V ST G + + + + E + T ++ G
Sbjct: 73 SGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQG 132
Query: 303 ATNGRPITHYKI-IARTNWNST 323
+ R + + TN +
Sbjct: 133 KEHLRSLRQKTMSYQWTNLRAP 154
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-19
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN-- 143
P F+ + EG VT C PKPK W KDG I I + +
Sbjct: 8 APFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L + + DD G Y+ A N G GRL+V
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-----LTIRYLNPERD 60
+T+TC G P WF++G+ ++ D Y IQ ++ L + D
Sbjct: 25 PVTFTCRVAGNPKPKIYWFKDGKQIS------PKSDHYTIQRDLDGTCSLHTTASTLD-D 77
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y A N + +L V +
Sbjct: 78 DGNYTIMAANPQGRISCTGRLMVQAVNSG 106
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-09
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W +G +I + + L T ++ D G Y + + G+IS ++
Sbjct: 41 YWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Query: 275 VEGPPGLPG 283
V+ P
Sbjct: 100 VQAVNSGPS 108
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 1e-19
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P + ++S+T G+G + P P+ W K+G I R + +
Sbjct: 6 PKIFE-RIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L+I V+ +DS A N+ G S L+V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-10
Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
D + G PD W++NG + Y+ L IR + E D
Sbjct: 22 DAHFRVRVVGKPDPECEWYKNGVKIE------RSDRIYWYWPEDNVCELVIRDVTGE-DS 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
A +A N S A L V
Sbjct: 75 ASIMVKAINIAGETSSHAFLLV 96
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-08
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 272
W NGV+I D P + + L I + + D+ + G+ S+
Sbjct: 38 EWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93
Query: 273 VIVEG 277
++V+
Sbjct: 94 LLVQA 98
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-19
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P + S G N N ++ P + W +G + +
Sbjct: 8 APRITL-RMRSHR-VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
L I DDSG Y TN G L V G Y
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDV-TGGDY 103
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-09
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 172 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
G + H P ++ + +N + + ++ +V W HNGV +
Sbjct: 1 GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEV--KWYHNGVELQ------- 50
Query: 232 ETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
E+ I+ G+ LEI + D+G Y V + G+ S T+ V G
Sbjct: 51 ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-09
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ + P W+ NG L++ + + L I + + D
Sbjct: 25 NTRFILNVQSKPTAEVKWYHNGV-------ELQESSKIHYTNTSGVLTLEILDCHTD-DS 76
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y+ N A L V
Sbjct: 77 GTYRAVCTNYKGEASDYATLDV 98
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 2e-19
Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%)
Query: 10 TCEAFGV---PDVTYSWFRNGEL--------LNSETLPLEDQDRYFIQ------DNVLTI 52
T V P++ SWF+ G ++ + + +E R F L +
Sbjct: 12 TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVV 71
Query: 53 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 112
N Y CR K L V+ + + + +T+ C
Sbjct: 72 TAANIS-HDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHS--ERSQFPDFSVLTVTCT 127
Query: 113 PEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLIS---PVSRDDSGIYSCTATNVH 165
A P P W + + G ++G+L ++ + + +C N
Sbjct: 128 VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187
Query: 166 GMDES 170
Sbjct: 188 EEAHG 192
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 31/194 (15%), Positives = 49/194 (25%), Gaps = 33/194 (17%)
Query: 101 AGEGGNVTIFCNPE---AAPKPKFVWKKDGN-----IIGS------------GGRRKIFE 140
A G VT+ P+ + W K G +IG G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 141 NGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 197
+ N L+++ + G Y C + L V P +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDFSV 121
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADA 253
L + C+ + V W G + DG L +
Sbjct: 122 LTVTCTVNAFPHPHV--QWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 254 GEYECVVKSTVGKI 267
CV K+ +
Sbjct: 177 LPVTCVGKNDKEEA 190
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 6/69 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLN--PERDPA 62
LT TC P W E P + + L++ P+
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177
Query: 63 MYQCRAKNQ 71
C KN
Sbjct: 178 PVTCVGKND 186
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ L +T A+ + G Y C +K +++ + + V P
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 105
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-19
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 272 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEH 330
+ GP P + V +V T+ T++W G I Y + + W ++
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 331 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ + +T +++ L + F+V+ N G EP++
Sbjct: 62 PVERC--GFT------VKD-LPTGARILFRVVGVNIAGRSEPATLL 98
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-19
Identities = 35/213 (16%), Positives = 54/213 (25%), Gaps = 17/213 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
+ T + P ++WT T + Y + +
Sbjct: 90 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWT---TPRESVKKYILEWCVLSDKAPCIT 146
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+ L Y V G G P S P
Sbjct: 147 DWQQEDG------TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAY--LKQAPPS 198
Query: 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447
+ P+ GK + + W+ LP + QN Y IF+R E +
Sbjct: 199 KGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV-----DSSH 252
Query: 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
+ S T Y V++ A D G E
Sbjct: 253 TEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 28/208 (13%), Positives = 49/208 (23%), Gaps = 28/208 (13%)
Query: 277 GPPGLPGGVQVVEVHK-TSATIQW--TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P + + + W I Y + T W S N + +
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDY-EVTLTRWKSHLQNYTVN--- 61
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 393
A+ V + Y + N +G S + D P
Sbjct: 62 -----------ATKLTVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMD 107
Query: 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453
K L + W Y + W +D T + + + +
Sbjct: 108 LKAFPKDNMLWVEWTT-----PRESVKKYILEWCVLSDKA-PCITDWQQEDGTVHRTYLR 161
Query: 454 SEFY-YTEYEVKVQAINDVGPGPESEVV 480
Y + V + GPG +
Sbjct: 162 GNLAESKCYLITVTPVYADGPGSPESIK 189
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ + W+ LP + N + Y++ + + Q+ T N V + Y
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVTLTR-WKSHLQNYT----VNATKLTVNLT----NDRYL 75
Query: 463 VKVQAINDVGPGPESEVVT 481
+ N VG + +
Sbjct: 76 ATLTVRNLVGKSDAAVLTI 94
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 255 EYECVV----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--P 308
Y V G + + + PP V+ +V K A ++W + +
Sbjct: 169 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF 228
Query: 309 ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG 368
I +Y I R V+ VD + E ++ + L + Y ++ A + G
Sbjct: 229 IRNYTIFYR-TIIGNETAVN-------VD--SSHTEYTLSS-LTSDTLYMVRMAAYTDEG 277
Query: 369 YGEPSSPSPQYNTP 382
+ P + TP
Sbjct: 278 GKD--GPEFTFTTP 289
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 4e-19
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 143
LKP + G + + AP P W + + +
Sbjct: 1 LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ R DSG Y N G DE+ +IV
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-07
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 186 LPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
L PKI I A L WT ++ +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA--TWTVGDSGAALAPELLVDAKS--- 55
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
+ +A AD+G Y+ VK+ +G+ VIV+
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ G PD T +W + + D
Sbjct: 19 THNLEVDFIGAPDPTATWTVGDS-------GAALAPELLVDAKSSTTSIFFPSAKRA-DS 70
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y+ + KN+L + ++ V
Sbjct: 71 GNYKLKVKNELGEDEAIFEVIV 92
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 6e-19
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P F + P EG + P P W +G + S K+ +
Sbjct: 6 PRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
L+ V D+G Y+C A N G +L VL
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-10
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
+ G+P SW+ NG ++ D + + + L + D
Sbjct: 22 FCRMDFKVSGLPAPDVSWYLNGR-------TVQSDDLHKMIVSEKGLHSLIFEVVRAS-D 73
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVL 84
Y C AKN+ + QL VL
Sbjct: 74 AGAYACVAKNRAGEATFTVQLDVL 97
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-07
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 272
W NG + + DL+++ + GL L +DAG Y CV K+ G+ +
Sbjct: 38 SWYLNGRTVQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93
Query: 273 VIVEG 277
+ V
Sbjct: 94 LDVLA 98
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 6e-19
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
S + V + + LE EG + T C A W D + +
Sbjct: 3 SGSSGLVQGRRVHIIE-DLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Query: 137 KIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
+I L + ++ DSG A G + L V PS + + P
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 8e-12
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
T+ C WF + PL + I VLT+R L + D
Sbjct: 30 SATFRCRISPANYEPVHWFLDKT-------PLHANELNEIDAQPGGYHVLTLRQLALK-D 81
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP 94
A +Q +SA LRV F +
Sbjct: 82 SGTIYFEAGDQ----RASAALRVTEKPSVFSRSG 111
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 170 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
S +V + + + + + RC V W + + +LN
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVH--WFLDKTPLHANELN 60
Query: 230 ELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
E++ GG L + + D+G G + V P
Sbjct: 61 EIDAQ----PGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 85.0 bits (209), Expect = 9e-19
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 38/200 (19%)
Query: 16 VPDVTYSWFRNGELLNSETLPLEDQDRYF-------IQDNVLTIRYLNPERDPAMYQCRA 68
V Y+W G E + + L + +++P+ D Y C+
Sbjct: 51 VFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQV 109
Query: 69 KN-----QLKTRYSSAQLRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFV 122
+ S L+V PS +E EG ++T+ C
Sbjct: 110 AQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT 169
Query: 123 WKKDGNIIGSG------------------------GRRKIFENGNLLISPVSRDDSGIYS 158
W + GR NL+I D+G
Sbjct: 170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVW 229
Query: 159 CTATNVHGMDESKGRLIVLH 178
C G ++ +L
Sbjct: 230 CELATGQGELDADRSSTILK 249
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 9e-16
Identities = 34/241 (14%), Positives = 59/241 (24%), Gaps = 63/241 (26%)
Query: 96 ESETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGS-------------------- 132
+E GG V + C+ + A P W K + S
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 133 ----------GGRRKIFENGN--LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLI 175
GR + L ++ V D G Y C G+D L
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 176 VLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232
V + + + + ++ + C +V W N + +
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT--WYTGPTFFENYETGTYQ 186
Query: 233 TPNINI------------------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
L I A DAG C + + G++ +
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 275 V 275
+
Sbjct: 247 I 247
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 8e-05
Identities = 14/97 (14%), Positives = 20/97 (20%), Gaps = 19/97 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL-----------------NSETLPLEDQDRY-FIQD 47
D+T TC + +W+ E R F
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212
Query: 48 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84
L IR D C + +L
Sbjct: 213 RNLVIRAAKIT-DAGRVWCELATGQGELDADRSSTIL 248
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 3e-18
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK 137
A L + S++ G +VT C ++ +P VW + N G R
Sbjct: 1 APLAAPSKPIMVTVEEQRSQS-VRPGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRA 57
Query: 138 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ NG L I V D+G Y CT +N+ MD+ L V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-08
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
++ ++ C+A ++ +WT N G+L I
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLH--------NGKLPSRAMDFNGILTIR 67
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVE 276
N +DAG Y C + T+ V+
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-07
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
D+T+ C A P T W R + LP R + +LTIR + P D Y
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH----NGKLP----SRAMDFNGILTIRNVQPS-DAGTY 77
Query: 65 QCRAKNQLKTRYSSAQLRV 83
C N +A L V
Sbjct: 78 VCTGSNMFAMDQGTATLHV 96
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-18
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
P + P + G +V +F W K I K+ + N L
Sbjct: 8 PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
I ++ G Y+ N G +++ L V+ P
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DG 240
Q P + A +++L + + W +I E+ ++ + +G
Sbjct: 12 QFPEDQKVRAGESVELFGKVTGTQPITC--TWMKFRKQI-------QESEHMKVENSENG 62
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
L I A G Y +V++ +G + + V P P G
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ + G +T +W + + +++ + ++++ LTI E
Sbjct: 24 SVELFGKVTGTQPITCTWMKFRK-------QIQESEHMKVENSENGSKLTILAARQE-HC 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
Y +N+L +R + L V+
Sbjct: 76 GCYTLLVENKLGSRQAQVNLTVV 98
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 84.2 bits (207), Expect = 4e-18
Identities = 40/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELL---DVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
+ + C + +W + + ++
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG---GRQQRLSDGTQESII 63
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDG 302
+ + + A + +I + + PP +P + ++ + +S QW G
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPG 123
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE-NVLVPWSTYEFKV 361
P + ++ N S + G+ SI L+ + V
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSIL----DCVPKDGQSHCSIPRKHLLLYQNMGIWV 179
Query: 362 IAGNELGYG--EPSSPSPQYNTPADKPYQ--APSRIGGGGGKIGDLSISWEPLPREKQNA 417
A N LG P + P + G L +SWEP
Sbjct: 180 QAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ--PGLH 237
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
N ++ + + + + + T Y ++++ I PG S
Sbjct: 238 INQKCELRHKPQRGEASWALV--GPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWS 295
Query: 478 EVVTIWHDPLVI 489
+ W L +
Sbjct: 296 D----WSPSLEL 303
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 3e-11
Identities = 31/306 (10%), Positives = 79/306 (25%), Gaps = 31/306 (10%)
Query: 103 EGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDS 154
G +T C P+P+ +W+ + G ++++ + + + ++ +
Sbjct: 14 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA 73
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
SC+ + + + P + +L + E L ++
Sbjct: 74 F-LSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSF 132
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGL---LEITNASFADAGEYECVVKSTVGKIS--- 268
R + + DG + + ++ +G
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192
Query: 269 ---TKTTVIVEGPPGLPGGVQVVEVHK---TSATIQWTDGATNGRPITHYKIIARTNWNS 322
V+ PP L E + W ++ +
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGE 252
Query: 323 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-- 380
+ + + + + + + L+P + Y ++ G S SP
Sbjct: 253 ASWALVGPLPLEAL-------QYELCG-LLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
Query: 381 TPADKP 386
T
Sbjct: 305 TTERAA 310
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 5e-18
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEH 330
P P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 5 SSGPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 331 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390
+ +I L P +TY ++ A N G GE S+ S P +P AP
Sbjct: 64 SM---------EGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP-SAP 112
Query: 391 SRIGGGGG 398
G G
Sbjct: 113 KLEGSGPS 120
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P +PS + ++ P P + YK WR + + S+
Sbjct: 3 SGSSGP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+V I T Y V++ A+N G G S
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 8e-18
Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 28/301 (9%)
Query: 186 LPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
P + H N C + +W N I IN
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI-----INRTA 64
Query: 241 GLLEITNASFADAGEY-ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
+ T+ + + + + + T+I PP P + + +W
Sbjct: 65 SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 124
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
G T++ + + + ++ +++ V + E
Sbjct: 125 DGG-RETHLETNFTLKSEWATHKFADCKAKR---------DTPTSCTVDYSTVYFVNIEV 174
Query: 360 KVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 417
V A N LG + P Y + P+ + L ++W ++
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHN--LSVINSEELSSILKLTWTNPSI--KSV 230
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
+ Y I +R K+ + + ++ + + +TEY +++ + + G G S
Sbjct: 231 IILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Query: 478 E 478
+
Sbjct: 290 D 290
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 6e-15
Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 33/301 (10%)
Query: 103 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
N T C + VWK + I I + + +
Sbjct: 18 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI 77
Query: 156 IYSCTATNVH--GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213
+C + +I P + L + + ++ E L+
Sbjct: 78 QLTCNILTFGQLEQNVYGITIISGLPPEKPKNL--SCIVNEGKKMRCEWDGGRETHLETN 135
Query: 214 YIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
+ + + + +D + N ++ +GK+++
Sbjct: 136 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV------WVEAENALGKVTSDH 189
Query: 272 TVIVEG---PPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 326
P P + V E + + WT+ + I Y I RT STW
Sbjct: 190 INFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQ 249
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPAD 384
+ D + R ++++ L P++ Y F++ E G G S S T D
Sbjct: 250 I------PPEDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
Query: 385 K 385
+
Sbjct: 303 R 303
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 8e-18
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGN---LLISP 148
+ EGG+V C E + V W + + + +I L +
Sbjct: 6 GQIMHAV-GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 149 VSRDDSGIYSCTATNVHGMDESKGRLIV 176
+++ D G Y C N +G D S L V
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-09
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 6 DLTWTCEAFGVPDVTY-SWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERD 60
+ + C+ T +W+ LE+ ++Y I +L ++ + D
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVR-------QLENSEKYEITYEDGVAILYVKDITKL-D 69
Query: 61 PAMYQCRAKNQLKTRYSSAQLRV 83
Y+C+ N S A+L V
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 9e-09
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W ++ N + I + G+ L + + + D G Y C V + G+ S+
Sbjct: 35 TWYFGVRQLEN-------SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87
Query: 271 TTVIVEGPP 279
+ V+G
Sbjct: 88 AELFVKGVR 96
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 8e-18
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFN 326
P P V V + W A++ Y + +
Sbjct: 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERV 66
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ G+ + +I+N L+P + Y F+V+A N+ G GE S+P
Sbjct: 67 ENTSHPGEM--------QVTIQN-LMPATVYIFRVMAQNKHGSGESSAPL 107
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 424
SS T P AP + +S ++W P + N+ Y +
Sbjct: 2 SSGSSGEHAPATTGPLP-SAPRDV-----VASLVSTRFIKLTWRT-PASDPHGDNLTYSV 54
Query: 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
F+ K+ + E + G V I + T Y +V A N G G S + +
Sbjct: 55 FYTKEGIARERVENTS---HPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE 110
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-17
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 15/112 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P QV T A + W +NG +T Y++ +
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV-EGSMQIC-------- 55
Query: 336 VDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y G I+ L P +TY +V A + +G G S TP
Sbjct: 56 ---YCGPGLSYEIKG-LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPPSSG 102
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-06
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++WE P Y++ W + Q P Y
Sbjct: 24 AQVNWEV-PLS-NGTDVTEYRLEW-GGVEGSMQI------------CYCGPGLSYEIKGL 68
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
T Y +VQA++ VG GP SEVV
Sbjct: 69 SPATTYYCRVQALSVVGAGPFSEVVAC 95
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-17
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P + S + T G PI Y + R+ + + +
Sbjct: 5 SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK--VQG 61
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
D +E+ L YE ++ A N LGY EP+ ++ P
Sbjct: 62 NKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE--FSMPPKPN 104
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+S ++ AP + Y + +R K+ + E + I + + YE
Sbjct: 24 FKLSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW---TMGYE 78
Query: 463 VKVQAINDVGPGPESEV 479
V++ A N +G +
Sbjct: 79 VQITAANRLGYSEPTVY 95
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 2e-17
Identities = 46/321 (14%), Positives = 84/321 (26%), Gaps = 33/321 (10%)
Query: 168 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227
D S + I S + P I ++ C + ++ +
Sbjct: 186 DWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE---------------KVLSAL 230
Query: 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 287
+ P I++DG + I + + + V T T + PP P +
Sbjct: 231 IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290
Query: 288 VEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 344
W A G T Y ++ + +E +
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLF---- 346
Query: 345 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS 404
+L Y F + A N LG S + N P+ +
Sbjct: 347 ----QMLPNQEIYNFTLNAHNPLG---RSQSTILVNITEKVYPHTPTSFKVKDINSTAVK 399
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464
+SW N +I +K N + Q + +V + YT Y +
Sbjct: 400 LSWHLPG--NFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFR 457
Query: 465 VQAIND--VGPGPESEVVTIW 483
++ + S
Sbjct: 458 IRCSTETFWKWSKWSNKKQHL 478
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 1e-11
Identities = 32/283 (11%), Positives = 80/283 (28%), Gaps = 30/283 (10%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G ++T C + + + +I G + N+ +S S + + T
Sbjct: 212 VGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASS--GTNVVFTTED 269
Query: 163 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 216
N+ G Y P ++ H ++ CS +Y
Sbjct: 270 NIFGTV---------IFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTL 320
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV- 275
+ + L + + + +G+ + V +
Sbjct: 321 VE---SFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT 377
Query: 276 -EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
+ P P +V +++ T+ + W + +I + + +
Sbjct: 378 EKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT----- 432
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY--GEPSSP 375
+++ L P++ Y F++ E + + S+
Sbjct: 433 IQGVENSSYLVALDK-LNPYTLYTFRIRCSTETFWKWSKWSNK 474
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 9e-04
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 3/101 (2%)
Query: 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI-YYKIFWRKKNDTEFQSETLKEYGN 444
P P ++ + ++ SW P P Y + E
Sbjct: 281 PPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRA--EAPT 338
Query: 445 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485
+ Y + A N +G + +V I
Sbjct: 339 NESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEK 379
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-17
Identities = 30/123 (24%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
+GN G G + T +D P P + + +SW P P QN
Sbjct: 3 SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YKI RK + ETL ++Y +V A+ G GP S
Sbjct: 62 TGYKIRHRK-TTRRGEMETL----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Query: 480 VTI 482
T
Sbjct: 117 YTA 119
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P V + V+ S + W G NG IT YKI R G+
Sbjct: 28 PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGF-ITGYKIRHRKTTRR----------GE 76
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
L S Y F+V A G G PS+
Sbjct: 77 METLEPNNLWYLFTG-LEKGSQYSFQVSAMTVNGTGPPSNW 116
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-17
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGK 334
P + V V T+ T++W G + Y + W ++ +I K
Sbjct: 5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
++T I L + +V A N G EP S
Sbjct: 65 T--KFT------ITG-LPTDAKIFVRVKAVNAAGASEPKYYS 97
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 45/232 (19%), Positives = 73/232 (31%), Gaps = 32/232 (13%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY V S ST + P G+ ++ S T+ W A IT Y+
Sbjct: 161 EYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWI--APRA-TITGYR 217
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
I S E + + T + N L P + Y ++A N
Sbjct: 218 IRHHPEHFSGR--PREDRVPHSRNSIT------LTN-LTPGTEYVVSIVALNGREESPLL 268
Query: 374 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 433
T +D P + + + ISW+ YY+I + +
Sbjct: 269 IGQQS--TVSDVP-RDLEVVAATPTSL---LISWDA-----PAVTVRYYRITYGETGGNS 317
Query: 434 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPES-EVVTI 482
E G+ A + P +Y + V A+ G P S + ++I
Sbjct: 318 PVQEFTVP-GSKSTATISGLKP----GVDYTITVYAVTGRGDSPASSKPISI 364
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 4e-16
Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 30/227 (13%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY V + K S + + P ++ + + + W +T++
Sbjct: 70 EYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 127
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ N E+ + N L+P + Y V + E P
Sbjct: 128 VRYSPVKNEEDV--------AELSISPSDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPL 178
Query: 374 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 433
+P+ I ++ W A Y+I ++ +
Sbjct: 179 R------GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSG 227
Query: 434 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 478
E + + P TEY V + A+N P
Sbjct: 228 RPREDRVP-HSRNSITLTNLTP----GTEYVVSIVALNGREESPLLI 269
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 28/207 (13%)
Query: 278 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + + T+ W IT Y+I ++ E V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 57
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ +N L P Y V + P S + P P+ +
Sbjct: 58 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTIIPAVPP------PTDLRFT 104
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 454
+ ++W P P + + + + + E +E + V+ +P
Sbjct: 105 NIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLP- 158
Query: 455 EFYYTEYEVKVQAINDVGPGPESEVVT 481
TEY V V ++ +
Sbjct: 159 ---GTEYVVSVSSVYEQHESTPLRGRQ 182
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-17
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P PG + + + + T++W T G IT Y + R N W + I +
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN- 68
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 376
+T + L + YEF+VIA N G PS PS
Sbjct: 69 -EFT------VSG-LTEDAAYEFRVIAKNAAGAISPPSEPS 101
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-17
Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
P P V V V + W A I + + ++ +
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERAL 66
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ G + ++ N L P + Y F+V+A NE G GE S P P P
Sbjct: 67 NTTQPGSL--------QLTVGN-LKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP 116
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-08
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 422
G S P + + P AP + +S +SW P + +
Sbjct: 1 GSSGSSGK-PAIPSSSVLP-SAPRDV-----VPVLVSSRFVRLSWRP--PAEAKGNIQTF 51
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+F+ ++ D ++ + G++ + V P Y +V A N+ GPG S+ +
Sbjct: 52 TVFFSREGDNRERALNTTQPGSLQLTVGNLKP----EAMYTFRVVAYNEWGPGESSQPIK 107
Query: 482 I 482
+
Sbjct: 108 V 108
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 4e-17
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+ P GG VT+ C A P P+ W KDG + + L++
Sbjct: 10 EVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------SPVLIL 61
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ D G YSC AT+ + + +
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-09
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
TCE P W ++G L VL + + P+ D Y C A
Sbjct: 31 TCEVPAQPSPQIHWMKDGVPLPLPP------------SPVLILPEIGPQ-DQGTYSCVAT 77
Query: 70 NQLKTRYSSAQLRVLTLKP 88
+ S + + ++P
Sbjct: 78 HSSHGPQESRAVSISIIEP 96
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-06
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P +A + L C + + W +GV + +L +
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQI--HWMKDGVPLPLPP------------SPVLILP 62
Query: 247 NASFADAGEYECVVKSTVGKI--STKTTVIVEGP 278
D G Y CV + S ++ + P
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 5e-17
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
+SA L V L F + A EG + C E + W K + G R
Sbjct: 9 TSAMLTVRALPIKFTEGL--RNEEATEGATAVLRC--ELSKMAPVEWWKGHETLRDGDRH 64
Query: 137 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
+ ++G L I + +D+G Y C G + + L V PS
Sbjct: 65 SLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
+ L V P + + LRC W +
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK----MAPVEWWKGHETL-- 58
Query: 226 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281
+ ++ DG L+I DAGEY C+ GK T + V P
Sbjct: 59 -----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPSG 109
Query: 282 P 282
P
Sbjct: 110 P 110
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 18/91 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
CE + V W++ E L D DR+ ++ + L IR L E D
Sbjct: 36 TAVLRCELSKMAPVE--WWKGHE-------TLRDGDRHSLRQDGARCELQIRGLVAE-DA 85
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 92
Y C + +SA L V +
Sbjct: 86 GEYLCMCGKE----RTSAMLTVRAMPSGPSS 112
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-17
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147
S G + + C W +DG + R +I + +
Sbjct: 4 GSSGVEV--ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQ 59
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
DSG+Y+C ++ G D + + V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 9e-12
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
+ LQLRC + + W +GV++ E+ I G +E+
Sbjct: 10 VESFLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLA-------ESNRTRITGEEVEVQ 59
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
++ AD+G Y CV S G +T +V V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-10
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C + +W R+G L + +R I + ++ P D +Y
Sbjct: 20 LLQLRCRLRDDVQ-SINWLRDGV-------QLAESNRTRITGEEVEVQDSVPA-DSGLYA 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS 89
C + + + + V PS
Sbjct: 71 CVTSSPSGSDTTYFSVNVSDALPS 94
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 6e-17
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P +P + + T ++QW+ + T Y + + F
Sbjct: 4 GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGED 63
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
YT ++N L + Y+FKVIA N G PS ++ T D
Sbjct: 64 L---AYT------VKN-LRRSTKYKFKVIAYNSEGKSNPSEVV-EFTTCPDSGP 106
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-17
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+F K L+ +GG V A PK + W K+G I + G
Sbjct: 7 GAAFAK-ILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
L I+ D Y TA G ++ L V GPS
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 6e-09
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
G ++ + L P + ++ + W NG I +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADP---KLEVKWYKNGQEIR-------PSTKYIF 56
Query: 239 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
G L I N D EY G T + V P
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ + E P + W++NG+ + +Y + +L I D
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKNGQ-------EIRPSTKYIFEHKGCQRILFINNCQMT-DD 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
+ Y A ++ S +L V + S
Sbjct: 76 SEYYVTAGDEK----CSTELFVRSGPSS 99
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 79.5 bits (195), Expect = 8e-17
Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 55/246 (22%)
Query: 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFVWKKDGNIIGS------ 132
R L P + G +V + C E + W + +
Sbjct: 1 RSQGL-PGLTVSS--PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLF 57
Query: 133 ------------GGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
R + +G+LL+ V + D GIY+C + K +
Sbjct: 58 YYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVE 117
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WT---------------HN 219
+ P P + + Q+RCS + E V + W +
Sbjct: 118 LWVLPEE----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173
Query: 220 GVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTVGKISTKTTV 273
+R G +++ G G +++ +D G Y C + + +
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Query: 274 IVEGPP 279
V
Sbjct: 234 HVVQDE 239
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 1e-13
Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 54/226 (23%)
Query: 13 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-----------------DNVLTIRYL 55
W + + ++ L + D L ++ +
Sbjct: 32 TEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 115
D +Y C + + ++ + + L + G + C+ ++
Sbjct: 92 QKA-DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD------LRVRVGDTTQMRCSIQS 144
Query: 116 APKPKFV---WKKDG---------------------NIIGSGGRRKIF------ENGNLL 145
+ + W +G R +G++
Sbjct: 145 TEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK 204
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
+ V D GIY+C+ L V+ P T
Sbjct: 205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-06
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGL--- 242
P++ + ++ + C E V + W + + + N+++ G
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 243 --------------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVV 288
L + + AD G Y C ++ + K V + P P ++V
Sbjct: 72 RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR 131
Query: 289 E 289
Sbjct: 132 V 132
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 9e-17
Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 28/207 (13%)
Query: 278 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + + T+ W + IT Y+I ++ E V +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWE--RSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 58
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ +N L P Y V + P S + P + +
Sbjct: 59 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPIS----DTIIPEVP--QLTDLSFV 105
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 454
+ + W PL ++ I Y+I + E + +VG V P
Sbjct: 106 DITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP- 159
Query: 455 EFYYTEYEVKVQAINDVGPGPESEVVT 481
+Y++ V + + G + +
Sbjct: 160 ---GIDYDISVITLINGGESAPTTLTQ 183
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 38/235 (16%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
+Y+ V + G S TT+ + P ++ + + + W +T++
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 219
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ N V+E I + + N L+P + Y V + E P
Sbjct: 220 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 270
Query: 374 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
+ T D P + ++ W P A Y+I
Sbjct: 271 RGRQK--TGLDSPTGIDFSDITANSF----------TVHWIA-P----RATITGYRIRHH 313
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ + ++ + + + TEY V + A+N P
Sbjct: 314 PEHFSG---RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 31/231 (13%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY V + K S + + + V++ +S ++WT N I Y+
Sbjct: 71 EYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWT--PLNSSTIIGYR 128
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
I + E + V YT + L P Y+ VI G P+
Sbjct: 129 ITVVAAGEGIP--IFEDFVDSSVGYYT------VTG-LEPGIDYDISVITLINGGESAPT 179
Query: 374 SPSPQYNTPADKPYQ-APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
+ + Q T P + IG + ++W P P + + + + +
Sbjct: 180 TLTQQ--TAVPPPTDLRFTNIGP-----DTMRVTWAPPP----SIDLTNFLVRYSPVKNE 228
Query: 433 EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
E L + V+ +P TEY V V ++ +
Sbjct: 229 E-DVAELSISPSDNAVVLTNLLP----GTEYVVSVSSVYEQHESTPLRGRQ 274
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-16
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKK-RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+ T +R + P + R L G + + + P+P+ VW K
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 127 GNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
G + R + + + +R DSG Y + + D + R+ V+
Sbjct: 62 GAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 187 PPKITIAAH----------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
PPKI + H L L + V +WT G L+T +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV--VWTKGGA--------PLDTSRV 70
Query: 237 NI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
++ + + A+ +D+GEYE V+ K + + V G
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L G P W + G L++ + + D D V +R D Y+
Sbjct: 41 QLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSD----FDTVFFVRQAARS-DSGEYE 95
Query: 66 CRAKNQLKTRYSSAQLRVL 84
+ + ++ ++RV+
Sbjct: 96 LSVQIENMKDTATIRIRVV 114
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 81.5 bits (200), Expect = 2e-16
Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 12/200 (6%)
Query: 287 VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
+ E+ ++S + D N + + + N + + ++ ++
Sbjct: 693 LKELEESSFRKTFEDYLHNV--VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLV 750
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN---TPADKPYQAPSRIGGGGGKIGDL 403
I L ++ Y ++ A N+ E S + + P K + + +
Sbjct: 751 ISG-LRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVV 809
Query: 404 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ W+ P ++ N + Y++ +R+ D E +T K + +R Y
Sbjct: 810 HLMWQE-P-KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLR---GLSPGNYS 864
Query: 463 VKVQAINDVGPGPESEVVTI 482
V+++A + G G +E
Sbjct: 865 VRIRATSLAGNGSWTEPTYF 884
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 4e-10
Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 39/219 (17%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P +P V + ++W + ITHY + + ++
Sbjct: 592 ATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDY----- 646
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN------TPADKPYQA 389
++ + +P T+ + + + + T + +
Sbjct: 647 ----------CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696
Query: 390 PSRIGGGGGKIGDLSISWEP-----LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN 444
++E + + + N+ E +
Sbjct: 697 EESS---------FRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE 747
Query: 445 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ I ++T Y +++QA N P V
Sbjct: 748 ----SLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV 782
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 4e-06
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 269 TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNV 327
+ T+ + G V + W + NG I Y++ R
Sbjct: 783 SARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRY------GD 835
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
E + + + + L P Y ++ A + G G + P+ Y T
Sbjct: 836 EELHLCDTRKHFALERGCRLRG-LSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDV- 892
Query: 388 QAPSRI 393
PS I
Sbjct: 893 --PSNI 896
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-16
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 88 PSFKK--RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----N 141
P + + + V C P P W K+G R ++ +
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+L++ V D G Y+C N +G L V+
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 6e-13
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAMY 64
+ + C A G P T W +NG+ E Y +++ L + + P D Y
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQE----HRIGGYKVRNQHWSLIMESVVPS-DKGNY 80
Query: 65 QCRAKNQLKTRYSSAQLRVL 84
C +N+ + + L V+
Sbjct: 81 TCVVENEYGSINHTYHLDVV 100
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-08
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 187 PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
+ A ++ RC A T W NG + +
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKNGKEFKQEH--RIGGYKVRNQHW 65
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L + + +D G Y CVV++ G I+ + V
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-16
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEHV 331
P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 8 SSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 332 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+ V +I L P +TY ++ A N G GE S+ S P
Sbjct: 64 MEGIV---------TIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-07
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ D P +PS + ++ P P + YK WR + + S+
Sbjct: 2 SHMDTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 58
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+V I T Y V++ A+N G G S
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 100
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-16
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 276 EGPPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
GPPG ++ ++W G PI+ Y + V
Sbjct: 6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV------ 59
Query: 334 KEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y G + E ++ + L+P TY F++ A N++G+G S P P
Sbjct: 60 -----YQGSEVECTVSS-LLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGP 107
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 20/87 (22%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+ + W P P +P Y + E + V +
Sbjct: 26 IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPR------------EVYQGSEVECTVSSL 72
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
Y +++A N +G GP SE I
Sbjct: 73 LPGKTYSFRLRAANKMGFGPFSEKCDI 99
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 5e-16
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDS 154
+ I + PKP W +G I+ +G L + + ++
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGP 180
G Y+ A N +G DE + + P
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWP 100
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 7e-10
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 185 QLPPKIT----IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
P IT + + + + + W +NG + + N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVKGNPKPAL--QWFYNGAILNESKYICTKIHVTNHTE 59
Query: 241 --GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
G L++ N + + G+Y + K+ GK + + G PG
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 3/83 (3%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTIRYLNPERDP 61
G P WF NG +LN + L + +
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM-NN 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
Y AKN+ +
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFM 97
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 9e-16
Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 28/214 (13%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S P + V++ +S ++WT N I Y+I T
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWT--PLNSSTIIGYRI--------TVVAA 61
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
E + E + ++ L P Y+ V G P++ + Q T
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTG-LEPGIDYDISVYTVKNGGESTPTTLTQQ--TAVP--- 115
Query: 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447
P+ + + ++W P P + + + + + E +E +
Sbjct: 116 -PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNA 169
Query: 448 AVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 479
V+ +P TEY V V ++ +
Sbjct: 170 VVLTNLLP----GTEYVVSVSSVYEQHESTPLRG 199
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-10
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
+Y+ V + G ST TT+ + P ++ + + + W +T++
Sbjct: 89 DYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFL 146
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ N V+E I + + N L+P + Y V + E P
Sbjct: 147 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 197
Query: 374 S 374
Sbjct: 198 R 198
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 23/125 (18%)
Query: 364 GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP 418
G+ + SS + + P P+ + D++ + W PL ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDL-----SFVDITDSSIGLRWTPLN----SST 50
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 476
I Y+I + E + +VG V P +Y++ V + + G
Sbjct: 51 IIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP----GIDYDISVYTVKNGGESTP 105
Query: 477 SEVVT 481
+ +
Sbjct: 106 TTLTQ 110
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-15
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
K P + G + + C +P P + W K+ + ++ ++
Sbjct: 3 KLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------YMV 54
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
V + G Y C N +SK I++ +
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-11
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C A G P Y WF+N L ET + + Y++ E Y
Sbjct: 20 TLVLQCVAVGSPIPHYQWFKNELPLTHET------------KKLYMVPYVDLE-HQGTYW 66
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSF 90
C N ++ S ++ +
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDELNNL 91
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-08
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 22/103 (21%)
Query: 187 PPKITI-------AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
+I + L L+C A + Y W N + + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------ 48
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGL 281
L + G Y C V + S K +I++ L
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-15
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+P +ES G + + C W +DG + R +I + +
Sbjct: 8 QPWGVPVEVESLL-VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEV 64
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
DSG+Y+C ++ G D + + V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-12
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P + + LQLRC + + W +GV++ E+ I
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLV-------ESNRTRIT 58
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
G +E+ ++ AD+G Y CV S G +T +V V
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 7e-09
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C + +W R+G L + +R I + +R P D +Y
Sbjct: 26 LLQLRCRLRD-DVQSINWLRDGV-------QLVESNRTRITGEEVEVRDSIPA-DSGLYA 76
Query: 66 CRAKNQLKTRYSSAQLRV 83
C + + + + V
Sbjct: 77 CVTSSPSGSDTTYFSVNV 94
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-15
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 18/106 (16%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------- 133
F + P GG+V + C +P P+ W +G
Sbjct: 21 MAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 134 ---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ I + +D+G Y C A+N + V
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 4e-10
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----------DNVLTIRYL 55
+ CEA G P W+ G+ N L D R + ++I L
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKP 88
E D Y+CRA N + + RV ++
Sbjct: 98 VEE-DTGTYECRASNDPDRNHLTRAPRVKWVRA 129
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-06
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 14/100 (14%)
Query: 187 PPKITIAAHRNLQLRCSA-----------HTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
P +++L C A + + +G R+ + ++ +
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ I D G YEC + + V
Sbjct: 88 AA---STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-15
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
+ + + G P P + + TS + W + P+ Y + + +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRL 65
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+ + +E+ L+P +Y F+V A ++ G+G + P
Sbjct: 66 NIPNPAQT--SVV------VED-LLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS 116
Query: 388 QA 389
Sbjct: 117 SG 118
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-07
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 33/124 (26%)
Query: 372 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 426
SS S A P P+R+ L +SW+ P + P Y + +
Sbjct: 4 GSSGSHDSRLTAGVP-DTPTRL-----VFSALGPTSLRVSWQE-P--RCERPLQGYSVEY 54
Query: 427 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGPGPESE 478
+ N E + P++ Y +V+A + G G E E
Sbjct: 55 QLLNGGELHRLN-----------IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
Query: 479 VVTI 482
V
Sbjct: 104 GVIT 107
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 76.1 bits (186), Expect = 2e-15
Identities = 37/290 (12%), Positives = 69/290 (23%), Gaps = 37/290 (12%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC L E L + + + NV ++ + C
Sbjct: 17 VLVTCSTSCDQPKLLGIETP--LPKKELLLPGNNRKVYELSNV---------QEDSQPMC 65
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFVW 123
+ + L V + PL S G+ N+T+ C V
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--NLTLRCQVEGGAPRANLTVVL 123
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--------RLI 175
+ + + +SC + +L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
P+ QL + + CS + A + G ++ P
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG--------DQRLNPT 235
Query: 236 INIDGGLLEIT---NASFADAGEYECVVKSTVGKISTKT--TVIVEGPPG 280
+ + + D G +G S +T TV + P
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
F + A EG T+ C E + WKK + GGR + ++G L
Sbjct: 9 ARFTQDL--KTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
I +S D+G YSC G + + L V LP + T
Sbjct: 65 QIHDLSVADAGEYSCMC----GQERTSATLTV-------RALPARFT 100
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-09
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
T CE V V W + E L D RY ++ + L I L+ D
Sbjct: 25 TATLQCELSKVAPVE--WKKGPE-------TLRDGGRYSLKQDGTRCELQIHDLSVA-DA 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 99
Y C + +SA L V L F + +
Sbjct: 75 GEYSCMCGQE----RTSATLTVRALPARFTE-GSGPSS 107
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 216 WTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKT 271
W + + ++ DG L+I + S ADAGEY C+ G+ T
Sbjct: 40 WKKGPETLR-------DGGRYSLKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSA 88
Query: 272 TVIVEGPP 279
T+ V P
Sbjct: 89 TLTVRALP 96
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 2e-15
Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------GGRRKIFENGN 143
+ Y GNVT P P + +WKK + + +G+
Sbjct: 3 QQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
L I ++ D Y + N+ K L VL S P I N L C
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-----KPMIYWECS-NATLTCE 113
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
E DV + + ++ ++C +
Sbjct: 114 V--LEGTDVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNR 157
Query: 264 VGKISTKTTV 273
V + S V
Sbjct: 158 VSQESEMEVV 167
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 3e-11
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 27/165 (16%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL----NSETLPLED-QDR-YFIQDN-VLTIRYLNPE 58
++T+ + VP W + + + NSE ++R Y + LTI L
Sbjct: 12 NVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
D Y+ + N T L VL + E N T+ C
Sbjct: 71 -DEDEYEMESPNI--TDTMKFFLYVL--------EMVSKPMIYWECSNATLTCEVLEGTD 119
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + + S + +S + + C A N
Sbjct: 120 VELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVN 156
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ T TCE DV ++ E L S T+ Y A
Sbjct: 104 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 148
Query: 63 MYQCRAKN 70
++C+A N
Sbjct: 149 PFKCKAVN 156
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-15
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S+ ++ V P L ++ H SAT+ W + P Y + + V
Sbjct: 2 SSGSSGPVPATPILQ--LEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV 59
Query: 328 SEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y G++ +++ L STY +V A N+ G S + P
Sbjct: 60 -----------YVGKETMCTVDG-LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 21/87 (24%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++SW+ P Y + N +F+ V
Sbjct: 27 ATLSWKQ--PPLSTVPADGYILELDDGNGGQFRE------------VYVGKETMCTVDGL 72
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
+ Y +V+A N G P S+ + +
Sbjct: 73 HFNSTYNARVKAFNKTGVSPYSKTLVL 99
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 74.2 bits (181), Expect = 2e-15
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 44/198 (22%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
E G+V + C+ A W KDG +IG K + ++D G+Y C +
Sbjct: 17 EDGSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGS 69
Query: 163 NVHGM------------DESKGRLIVLHGPS---------------YYEQLPPKITIAAH 195
D K Q P K++I+
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAG 254
+ L C + +W HN I + + NI D L + S +G
Sbjct: 130 T-VILTCPQYPGS----EILWQHNDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 180
Query: 255 EYECVVKSTVGKISTKTT 272
Y C + + + +
Sbjct: 181 YYVCYPRGSKPEDANFYL 198
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 6e-13
Identities = 25/183 (13%), Positives = 46/183 (25%), Gaps = 40/183 (21%)
Query: 15 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74
+WF++G+++ T + + MYQC+
Sbjct: 26 DAEAKNITWFKDGKMIGFLT----------EDKKKWNLGSNAKD-PRGMYQCKGSQNKSK 74
Query: 75 RY------------SSAQLRVLTLKPSFKKRPLESE------------TYAGEGGNVTIF 110
+ K K+ + G V +
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Query: 111 CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSR-DDSGIYSCTATNVHGM 167
C P + +W+ + IG K + L + S + SG Y C
Sbjct: 135 C--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192
Query: 168 DES 170
D +
Sbjct: 193 DAN 195
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 1e-04
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC + ++ W N + + + ED ++ L+++ + Y C
Sbjct: 131 VILTCPQYPGSEIL--WQHNDKNIGGD----EDDKNIGSDEDHLSLKEFSELEQSGYYVC 184
Query: 67 RAKNQLKTRYSSAQLRVLTLK 87
+ + L L+
Sbjct: 185 YPRGSKPEDANFY----LYLR 201
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 2e-15
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNII--GSG 133
SS L V P +A G I C + P P + W N++ G+
Sbjct: 5 SSGTLTVNG-PPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 134 GRRKIFENGN-------LLISPVSR-DDSGIYSCTATNVHGMDESKGRLIV 176
GR + L IS + R D IY+CTA N G D RL
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
G S G L V P Q++C + D W+ + +
Sbjct: 1 GSSGSSGTLTVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLES 57
Query: 226 MDLNELETPNINIDGGL---LEITNASFAD-AGEYECVVKSTVGKISTKTTVIVEGPP 279
I+ + G+ L I+N AD Y C ++ G + + +G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-06
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 10 TCEAFGVPD-VTYSWFRNGELLNSETLP---LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
C P +W +L S T +E + LTI + +Y
Sbjct: 34 KCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYN 93
Query: 66 CRAKNQLKTRYSSAQLRV 83
C A N + +L+
Sbjct: 94 CTAWNSFGSDTEIIRLKE 111
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 4e-15
Identities = 35/220 (15%), Positives = 63/220 (28%), Gaps = 33/220 (15%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 324
G + V P + V +V T A ++WT + +
Sbjct: 4 GISGGGGGIPV---IDGPTQILVRDVSDTVAFVEWTPPRA---KVDFILLKYGLVGGEGG 57
Query: 325 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384
+ S++ L P S YE + A + SS T D
Sbjct: 58 K--------TTFRLQPPLSQYSVQA-LRPGSRYEVSISAVRGTNESDASSTQFT--TEID 106
Query: 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY-G 443
AP + G L + W+ A YK+ + ++ + + G
Sbjct: 107 ----APKNLRVGSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIG 157
Query: 444 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+ +P TEY V + A+ + + +
Sbjct: 158 PTTKTTLTDLVP----GTEYGVGISAVMNSKQSIPATMNA 193
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 2e-14
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 39/232 (16%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
YE + + S ++ P ++V TS ++W + YK
Sbjct: 80 RYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWD--NSEA-EAQEYK 136
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
++ T + V + T + + LVP + Y + A P+
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTT------LTD-LVPGTEYGVGISAVMNSKQSIPA 189
Query: 374 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
+ + + T D P + + I S+ W + P +Y+I +
Sbjct: 190 TMNAR--TELDSPRDLMVTASSETSI----------SLIWTK-A----SGPIDHYRITFT 232
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
+ + + EY + + A ES V
Sbjct: 233 PSSGISSEVTV-----PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 5e-10
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 25/185 (13%)
Query: 199 QLRCSAHTEELLDVAYIWTH-----NGVRIGNMDLNELETPNINIDGGLLEITNASFAD- 252
LR + T LD+ W + ++ L + + + G+ T + D
Sbjct: 110 NLRVGSRTATSLDLE--WDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167
Query: 253 -AG-EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 309
G EY + + K S T+ P + V +TS ++ WT +G PI
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWT--KASG-PI 224
Query: 310 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 369
HY+I + + E + ++ YT + + L P + Y + A
Sbjct: 225 DHYRITFTPSSGISS----EVTVPRDRTSYT------LTD-LEPGAEYIISITAERGRQQ 273
Query: 370 GEPSS 374
S+
Sbjct: 274 SLEST 278
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRD 152
+ + EG V C + P P +W + S GR +F +G L +
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ 451
Query: 153 DSGIYSCTATNVHGMDESKGRLIV 176
D+G Y C A N G D L V
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHV 475
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
++ ++ + +Q C A + + +W + + N T +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI--LWLSPRKHLVSAKSNGRLTVFPD- 440
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
G LE+ A D G Y C+ + G S + V
Sbjct: 441 --GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 8e-15
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 158
I P P W +G + + G LL + + ++G Y+
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 192
A N G L P +++ P I
Sbjct: 82 LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPI 115
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 10 TCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
G P T W NG L S+ + +E I + L + Y A
Sbjct: 26 EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY-NNGNYTLIA 84
Query: 69 KNQLKTRYSSAQLRVL 84
KN L T + L
Sbjct: 85 KNPLGTANQTINGHFL 100
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-08
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 17/106 (16%)
Query: 185 QLPPKIT----IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELET-P 234
PP++ + T W HNG + + +E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPT-------LHWLHNGQPLRESKIIHVEYYQ 58
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
I G L + + G Y + K+ +G + P
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 104
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-14
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 426
G S T P AP + ++ I W P ++Q+ + Y+I
Sbjct: 1 GSSGSSGWILAS-TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISH 59
Query: 427 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ + + N A I + + V++ A+ G GP S+ V I
Sbjct: 60 VWQSAGISKELLEEVGQNGSRAR--ISVQVHNATCTVRIAAVTRGGVGPFSDPVKI 113
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 7e-07
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 17/118 (14%)
Query: 278 PPGLPGGVQVVEVH-KTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P P V V + I+W +G + Y+I + E V
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE-LVGYRISHVWQSAGISKELLEEVGQ 76
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
A I V +T ++ A G G S P + PA PS
Sbjct: 77 NG-------SRARISV-QVHNATCTVRIAAVTRGGVGPFSDPV-KIFIPAH---SGPS 122
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+K PL G + P WK G + + +I E+G
Sbjct: 5 LIEVEK-PLYGVE-VFVGETAHFEI-ELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L++ +G S A N S L V
Sbjct: 62 LILHNCQLGMTGEVSFQAANTK----SAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-08
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 17/80 (21%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAM 63
+ E PDV W G+ PL I ++ +L +
Sbjct: 24 HFEIE-LSEPDVHGQWKLKGQ-------PLAASPDCEIIEDGKKHILILHNCQLG-MTGE 74
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
+A N S+A L+V
Sbjct: 75 VSFQAANT----KSAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGK 266
DV W G + +P+ I DG L + N GE
Sbjct: 33 DVHGQWKLKGQPLA-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ----AAN 81
Query: 267 ISTKTTVIVE 276
+ + V+
Sbjct: 82 TKSAANLKVK 91
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 41/267 (15%), Positives = 67/267 (25%), Gaps = 31/267 (11%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+T C + ++ + Q + + Y C
Sbjct: 41 VTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQ-------ESFNMSPVTTA-HAGNYTC 91
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRP----LESETYAGEGGNVTIFCNPEAAPKPKFV 122
R + SA + + + R G V + C + F
Sbjct: 92 RGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMF-EHFF 150
Query: 123 WKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDE----SKGRL 174
K+G +G N I P+ +G Y C + H + S
Sbjct: 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLD 210
Query: 175 IVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232
IV+ GP L P + A ++ L CS+ Y + R G L
Sbjct: 211 IVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SSYDMYHLS----REGGAHERRLP 263
Query: 233 TPNINIDGGLLEITNASFADAGEYECV 259
+ G Y C
Sbjct: 264 AVRKVNRTFQADFPLGPATHGGTYRCF 290
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
GG+VT+ C+ F+ K+ I +IF+ + +SPV+ +G Y+C +
Sbjct: 37 RGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQE-SFNMSPVTTAHAGNYTCRGS 94
Query: 163 NVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIW 216
+ H S +I++ G L P + + + L+C + +
Sbjct: 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM---FEHFFL 151
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
G+ L ++ I A AG Y C
Sbjct: 152 HKEGISKDPSRLVGQIHDGVS--KANFSIGPMMLALAGTYRC 191
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 13/167 (7%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ C + + + + G + L + D + +I + Y+C
Sbjct: 136 VILQCWS-DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKAN--FSIGPMMLA-LAGTYRC 191
Query: 67 RAKNQLKTRYSSA-----QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
SA + V T + G +VT+ C+ + +
Sbjct: 192 YGSVTHTPYQLSAPSDPLDIVV-TGPYEKPSLSAQPGPKVQAGESVTLSCSSRS-SYDMY 249
Query: 122 VWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHG 166
++G N G Y C + H
Sbjct: 250 HLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHS 296
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPV 149
PL +T G + + C E + W K+G + R K+ + G L+I+
Sbjct: 12 TPLTDQT-VNLGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANA 68
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
+D G Y ++ V+ GPS
Sbjct: 69 LTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-08
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
KI T+ + + L+C ++ WT NG+ + E+ + +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQ-------ESDRLKVV 55
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
G + L I NA D G+Y + ++ V V P
Sbjct: 56 QKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-07
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 16/83 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
++ CE W +NG P+++ DR + L I E D
Sbjct: 24 EICLKCEISENIPGK--WTKNGL-------PVQESDRLKVVQKGRIHKLVIANALTE-DE 73
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
Y T A++ V+
Sbjct: 74 GDYVFAPDAYNVT--LPAKVHVI 94
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 6e-14
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
SS S +T P P + + ++W+ +E QN Y+I +R+ +
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 433 EFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ E G V + + + +Y V VQA N G GP S +
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINA 112
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P G P V + V S + W NG I Y+I R N + S
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSI----V 69
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
E+ + +++N L ++ Y V A N G G SS
Sbjct: 70 EMKATGDSEVYTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 109
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 7e-14
Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 12/121 (9%)
Query: 268 STKTTVIVEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWF 325
PG+P V ++H S I W NG I Y + N +
Sbjct: 7 GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKW 66
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
+ +E + L P Y +V ++ G S
Sbjct: 67 EMIYSGATRE---------HLCDR-LNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116
Query: 386 P 386
P
Sbjct: 117 P 117
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 21/119 (17%)
Query: 372 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYYKIFWRKKN 430
SS ++ T DKP P + G I+W+P P++ A Y + + +
Sbjct: 4 GSSGVVEFTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEMAEGS 61
Query: 431 DTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVTI 482
+ GN + + + Y ++V I+D G SE + +
Sbjct: 62 N-----------GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLV 109
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 9e-14
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG +Q V TS I W A P+ Y++ N+
Sbjct: 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIE------- 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+E L ++ Y + +A N G G +
Sbjct: 58 ----VDGLSYKLEG-LKKFTEYSLRFLAYNRYGPGVSTDDI 93
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-08
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+ I+WEP P N P Y++F + + + Q+ + + Y
Sbjct: 24 ILITWEP-P-AYANGPVQGYRLFCTEVSTGKEQN-------------IEVDGLSYKLEGL 68
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
+TEY ++ A N GPG ++ +T+
Sbjct: 69 KKFTEYSLRFLAYNRYGPGVSTDDITV 95
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-14
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S T P P ++ + +SW P P + +N Y + +
Sbjct: 1 GSSGSSGTIEAR-TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + + + + +TEY V V+A DVGPGPES V +
Sbjct: 60 AVDGEDRGRHVVDGISR-EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV 113
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P V V + T+ + W + NG IT Y + I +
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
E + + L W+ Y V A ++G G SSP T D P P
Sbjct: 77 EHSSWD------LVG-LEKWTEYRVWVRAHTDVGPGPESSPV-LVRTDEDVPSGPPR 125
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 9e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
SS ++ K++P E A G + T+ C A + + W KDG + S +
Sbjct: 5 SSGKVVFA------KEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKV 57
Query: 137 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ G L++ + ++G YSC A + RL V
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRLQV 96
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-07
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
G S G+++ + + + A + L C + +V W +G ++
Sbjct: 1 GSSGSSGKVVFAKEQPAHRE----VQAEAGASATLSCEV-AQAQTEV--TWYKDGKKLS- 52
Query: 226 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
+ + + G L + A A+AGEY C G + V G
Sbjct: 53 ------SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVAG 98
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
T +CE +W+++G+ L + ++ L ++ +
Sbjct: 28 SATLSCEV-AQAQTEVTWYKDGK-------KLSSSSKVRVEAVGCTRRLVVQQAGQA-EA 78
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C A Q S +L+V
Sbjct: 79 GEYSCEAGGQ----QLSFRLQV 96
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 77 SSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSG 133
S +L + F ES A G +TI C+ + K +
Sbjct: 233 HSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS 292
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
NG+L V +D G+Y+C A + L V +
Sbjct: 293 NGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 6/101 (5%)
Query: 183 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 242
E L +RC + + +W L++ ++++ G
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQ---GMTKVWVSPS---NEQVLSQGSNGSVSVRNGD 302
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
L D G Y C + + V
Sbjct: 303 LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 19/115 (16%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
LT C+ + E + S+ +++ L + + E D +Y C
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQG----SNGSVSVRNGDLFFKKVQVE-DGGVYTC 318
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
A + S +L+V G + T+ + P+F
Sbjct: 319 YAMGETFNETLSVELKVYNFTL--------------HGHHDTLNAAADPWSHPQF 359
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-13
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
F + L + E G C E P W+K + + G+ + + G L
Sbjct: 9 NCFTE-ELTNLQ-VEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
IS + + DS Y+C G +S+ +L+V
Sbjct: 66 TISALEKADSDTYTCDI----GQAQSRAQLLV 93
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W + + + +G L I+ AD+ Y C +G+ ++
Sbjct: 40 TWRKGLLEL-------RASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSR 88
Query: 271 TTVIVEGPPGLP 282
++V+G P
Sbjct: 89 AQLLVQGRRSGP 100
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-06
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 17/88 (19%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAM 63
+TC+ P T +W + L ++ LTI L D
Sbjct: 27 VFTCKT-EHPAATVTWRKGLL-------ELRASGKHQPSQEGLTLRLTISALEKA-DSDT 77
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFK 91
Y C S AQL V +
Sbjct: 78 YTCDIGQAQ----SRAQLLVQGRRSGPS 101
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-13
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGG 241
I ++ L L C+A TE + + + W + + + DL +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I + +D G Y C S + T V V P
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 5e-10
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 87 KPSFKKRPLE----SETYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSG------- 133
P ++ + G + + C F W+ +
Sbjct: 2 DPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 61
Query: 134 ----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
G L I V+R D G+Y+C A++ ++ + V P
Sbjct: 62 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-05
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 7 LTWTCEAFGVPD--VTYSWFRNGELLN-----SETLPLEDQDRYFIQDNVLTIRYLNPER 59
L C A + + ++W + L + + LTI +
Sbjct: 26 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS- 84
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRV 83
D +Y C A + L T+ +S +RV
Sbjct: 85 DQGLYTCAASSGLMTKKNSTFVRV 108
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 34/191 (17%)
Query: 103 EGGNVTIFCNPEAAPKPKFV-WKKDGNII------------------GSGGRRKIFENGN 143
G +VT+ A K F+ W + + G R ++ +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRC 202
L +S + +D+G Y + S L +L + ++ L L C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
S + +V++ W G + PN+ + + + +Y C+ ++
Sbjct: 132 SVEDAD-DNVSFRWEALGNTL-------SSQPNLTV------SWDPRISSEQDYTCIAEN 177
Query: 263 TVGKISTKTTV 273
V +S +
Sbjct: 178 AVSNLSFSVSA 188
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+L TC +V++ W G L+S+ LT+ + Y
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALGNTLSSQ--------------PNLTVSWDPRISSEQDY 171
Query: 65 QCRAKNQLKTRYSSAQLRVL 84
C A+N + S + L
Sbjct: 172 TCIAENAVSNLSFSVSAQKL 191
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG ++ TS T+ W + I +YK+ +V
Sbjct: 15 VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVD------- 67
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+I L ++ Y F+V+A N+ G G +
Sbjct: 68 ----VSSHSYTING-LKKYTEYSFRVVAYNKHGPGVSTPD 102
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++++WE P N YK+++ +K + Q V + S Y
Sbjct: 34 ITVTWET-P-VSGNGEIQNYKLYYMEKGTDKEQD-------------VDVSSHSYTINGL 78
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
YTEY +V A N GPG + V +
Sbjct: 79 KKYTEYSFRVVAYNKHGPGVSTPDVAV 105
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGS---GGRRKIFENG 142
P P + EG + C P W G ++ R + +G
Sbjct: 352 APFIMDAP--RDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV----LHGPSYY 183
L S V D+G+Y+C TNV G + L V H ++
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DGGL 242
P + I+ R +L+C + W NG + + + P I++ + G
Sbjct: 357 DAPRDLNISEGRMAELKCRTPPM----SSVKWLLPNGTVLSHASRH----PRISVLNDGT 408
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L ++ +D G Y C+V + G + + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-13
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 11/116 (9%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S T P Q P + + ++WE + + + YK+F+R
Sbjct: 1 GSSGSSGTVNVT-TKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYR 58
Query: 428 KKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ Q T K + + +Y ++V+A D G G SE + I
Sbjct: 59 TSSQNNVQVLNTNKTSAELVLP--------IKEDYIIEVKATTDGGDGTSSEQIRI 106
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-07
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 17/114 (14%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
+ PP P G V T + W +T YK+ RT+ + ++ +
Sbjct: 15 KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENES-EVTGYKVFYRTSSQNNVQVLNTN-- 71
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ S E VL Y +V A + G G S + P
Sbjct: 72 -----------KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S + + D P +AP+ +G ++S+ WE + Y+I +
Sbjct: 1 GSSGSSGVAVIN-SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYW 55
Query: 428 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+D E + ++ A + +P T+Y ++V A N G GP S+++
Sbjct: 56 AAHDKEEAANRVQVTSQEYSARLENLLP----DTQYFIEVGACNSAGCGPPSDMIEA 108
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P V V + + ++ W + Y+I W + V
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVL-EKI-VESYQI-------RYWAAHDKEEAANRVQ 68
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ A +EN L+P + Y +V A N G G PS
Sbjct: 69 VTSQEYSARLEN-LLPDTQYFIEVGACNSAGCGPPSDM 105
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-13
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+F K+P G K W++ G+ I + + + G
Sbjct: 8 VSAFSKKP--RSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L + V D G Y+ A G + K L V
Sbjct: 65 LTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ E V W R G + ++Y + LT+R + P D
Sbjct: 25 PAVFEAETER-AGVKVRWQRGGS-------DISASNKYGLATEGTRHTLTVREVGPA-DQ 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y A + L+V
Sbjct: 76 GSYAVIAGSSK----VKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
S + + P + +AA V W G I + +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERA---GVKVRWQRGGSDIS-------ASNKYGLA 57
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
+G L + AD G Y + G K + V
Sbjct: 58 TEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-13
Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 103 EGGNVTIFCNPEAAPKPKFV------------WKKDGNIIGSGGRRK-----IFENGNLL 145
G NVT+ + + + +G K NG L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 204
I VS++D G Y + D+ K + V YE + P I N L C
Sbjct: 73 IYNVSKEDRGDYYMRMLH-ETEDQWKITMEV------YEMVSKPMIYWEC-SNATLTCEV 124
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264
DV + + ++ ++C + V
Sbjct: 125 LEGT--DVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRV 168
Query: 265 GKISTKTTV 273
+ S V
Sbjct: 169 SQESEMEVV 177
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ T TCE DV ++ E L S T+ Y A
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 158
Query: 63 MYQCRAKN 70
++C+A N
Sbjct: 159 PFKCKAVN 166
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 5e-13
Identities = 21/180 (11%), Positives = 45/180 (25%), Gaps = 16/180 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV------LTIRYLNPER 59
++ C+ R L+ + +++ + I +
Sbjct: 19 SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR- 77
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D Y+C Y ++V R G V + C P
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYM----RIDTRILEVPGTGEVQLTCQARGYPLA 133
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLIS---PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ W+ + G ++ + S +SC N H + + +
Sbjct: 134 EVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-13
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 75 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSG 133
+ + + +F+K+ + +G + + A + W K+G I SG
Sbjct: 4 HHHHSSMDEKK-STAFQKKLEPAYQ-VSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSG 60
Query: 134 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ G L IS S D Y C ++ L V
Sbjct: 61 SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFV 102
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 169 ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
+ ++ ++L P ++ ++L + +V W NG I
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEV--KWLKNGQEI----- 56
Query: 229 NELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
++ G L I+ S AD Y+CV VG T + V+
Sbjct: 57 -QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ T E D W +NG+ + +Y + LTI + D
Sbjct: 33 KIRLTVELAD-HDAEVKWLKNGQEIQ------MSGSKYIFESIGAKRTLTISQCSLA-DD 84
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
A YQC + S +L V
Sbjct: 85 AAYQCVVGGEK----CSTELFV 102
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-13
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S T +D P AP + + I W+P QN YKI +R
Sbjct: 1 GSSGSSGDVAVR-TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 428 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
K + +ETL G ++ TEY +V A+ G GP ++ ++
Sbjct: 60 KASRKSDVTETLVS-GTQLSQLIEGLDR----GTEYNFRVAALTINGTGPATDWLSA 111
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P + + + S I W NG+ IT YKI + S
Sbjct: 18 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKI--------RYRKASRKSDVT 68
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390
E + IE L + Y F+V A G G + T +
Sbjct: 69 ETLVSGTQLSQLIEG-LDRGTEYNFRVAALTINGTGPATDWL-SAETFESDLDETR 122
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 5e-13
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P V + W + + Y + R + W + V G E
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTE- 62
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
E + L+ YEF+++A +PS+ + + P
Sbjct: 63 ------TELLVPG-LIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGP 105
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 5e-13
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
R + A +P F +P +E GEG + +C A+ P
Sbjct: 458 YSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVT 515
Query: 123 WKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
W KD + + NGN L I+ V DD G Y+ A N +G E L V
Sbjct: 516 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 8e-10
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 272 TVIVEGPPGLPGGVQVVEVHKTSATIQWT----DGATNGRPITHYKIIARTNWNSTWFNV 327
V P P + + + + W DG G +T+Y I R +W
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDG---GSLVTNYTIEKREAMGGSWSPC 59
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
++ R + L YEF++IA N+ G +P P+ P D+
Sbjct: 60 AK-----------SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108
Query: 388 QAPSR 392
+
Sbjct: 109 RRRGY 113
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNV--LTIRYLNPERDPAMYQ 65
C +W ++ L+ +Y + N LTI + + D Y
Sbjct: 503 YCRVIASSPPVVTWHKDDR-------ELKQSVKYMKRYNGNDYGLTINRVKGD-DKGEYT 554
Query: 66 CRAKNQLKTRYSSAQLRV 83
RAKN T+ L V
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 7e-13
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
KR EG + + C + +W G +GS R + G
Sbjct: 9 VGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L++ + D+G + + SK LIV
Sbjct: 67 LVVREAAPSDAGEVVFSVRGL----TSKASLIV 95
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 245
+ + + C + E +WT G +G + G L +
Sbjct: 18 MEVLEGESCSFECVL-SHESASDPAMWTVGGKTVG-------SSSRFQATRQGRKYILVV 69
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
A+ +DAGE V +++K ++IV G G
Sbjct: 70 REAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSSG 104
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 17/79 (21%)
Query: 10 TCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMY 64
C + W G+ + R+ +L +R P D
Sbjct: 29 ECVLSHESASDPAMWTVGGK-------TVGSSSRFQATRQGRKYILVVREAAPS-DAGEV 80
Query: 65 QCRAKNQLKTRYSSAQLRV 83
+ S A L V
Sbjct: 81 VFSVRGLT----SKASLIV 95
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P P + G ++W+P ++N I Y + +R N + L+
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQELQ 58
Query: 441 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ P T Y++KV+A G GP S +
Sbjct: 59 NITTDTRFTLTGLKP----DTTYDIKVRAWTSKGSGPLSPSIQS 98
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-08
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
GP G P + V + ++ + W NGR I Y ++ R +
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTVVFRDINSQQELQNI---- 60
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
T ++ L P +TY+ KV A G G S
Sbjct: 61 -------TTDTRFTLTG-LKPDTTYDIKVRAWTSKGSGPLSPS 95
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-12
Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 17/211 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
PPG P + +K + T W G G P T+Y + + +++ G
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGG 395
+ G++ S+ W TY V A N++G Y D P + +
Sbjct: 62 CHFGKQYTSM------WRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQ 115
Query: 396 GGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453
+ L I W P L K + Y+I + + E++ + +I
Sbjct: 116 PEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTE-----FKIL 170
Query: 454 SEFYYTEYEVKVQAINDVGPGPE-SEVVTIW 483
S +Y V+V+ D G S I
Sbjct: 171 SLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ 201
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 52 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL------KPSFKKRPLESETYAGEGG 105
I+ + P +C LK RY + L P + P ++ EG
Sbjct: 304 IKDMAPSNTACCARCNTPPNLKGRY----IGELDQNYFTCYAPVIVEPP--ADLNVTEGM 357
Query: 106 NVTIFCNPEAAPKPKFVWKK-DGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTA 161
+ C + W +G ++ G R + +G L + V+ D+G+Y+C
Sbjct: 358 AAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMV 416
Query: 162 TNVHGMDESKGRLIVLHGPSYYEQLPPK 189
+N G + L V
Sbjct: 417 SNSVGNTTASATLNVT-------GTHHH 437
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLL 243
+ P + + +L+C A T + W G + + I + G L
Sbjct: 346 EPPADLNVTEGMAAELKCRASTSL---TSVSWITPN---GTVMTHGAYKVRIAVLSDGTL 399
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
TN + D G Y C+V ++VG + T+ V G
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 24/207 (11%), Positives = 62/207 (29%), Gaps = 34/207 (16%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P ++V + +T+ +++W Y++ + + E++
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWR--RPVA-KFDRYRLTYVSP-SGKK---------NEME 52
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397
+ L + Y ++A +P++ T +P I
Sbjct: 53 IPVDSTSFILRG-LDAGTEYTISLVAEKGRHKSKPTTIKGS--TVVG----SPKGISFSD 105
Query: 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSE 455
++SW P + Y++ + T+ G+ + +P
Sbjct: 106 ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVD--GSKTRTKLVKLVP-- 156
Query: 456 FYYTEYEVKVQAINDVGPG-PESEVVT 481
+Y V + ++ P S ++
Sbjct: 157 --GVDYNVNIISVKGFEESEPISGILK 181
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY + + S TT+ G P G+ ++ + SAT+ WT + Y+
Sbjct: 70 EYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT--PPRS-RVDSYR 126
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ T V + + LVP Y +I+ EP
Sbjct: 127 VSYVPITGGTP---------NVVTVDGSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPI 176
Query: 374 SPS 376
S
Sbjct: 177 SGI 179
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-12
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 85 TLKPSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN 143
T S+ P A V + C P + W KDG + + +
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 144 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
L++ V +DSG Y C + + + + V + P +I
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTV-------TEPPVRII 106
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 245
+ + L C +V WT +G + E+P + + + + L +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEV--RWTKDGEEVV-------ESPALLLQKEDTVRRLVL 72
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
D+GEY C + S TV V PP
Sbjct: 73 PAVQLEDSGEYLCE----IDDESASFTVTVTEPP 102
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-06
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 17/96 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ TCE P W ++GE + + +Q L + + E D
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGE-------EVVESPALLLQKEDTVRRLVLPAVQLE-DS 80
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES 97
Y C ++ +S + V S
Sbjct: 81 GEYLCEIDDES----ASFTVTVTEPPVRIIYSGPSS 112
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-12
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG + + +A +QW + Y++ + + GK+
Sbjct: 5 SSGPG-RPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID---FGKD 60
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+T + L +TY F++ A N G GE + TP D
Sbjct: 61 DQHFT------VTG-LHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPEDLS 102
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ W P P+E + Y++ + + ++ + + + T Y
Sbjct: 23 ALLQWHP-PKE-LPGELLGYRLQYCRADEARPNTIDFGKDDQH----FTVTGLHKGTTYI 76
Query: 463 VKVQAINDVGPGPESEVVTI 482
++ A N G G E E
Sbjct: 77 FRLAAKNRAGLGEEFEKEIR 96
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 3e-12
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----------FENGNLLISPVSRDDSG 155
+ I + + P P W +G+++ +G L ++ + ++G
Sbjct: 17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 156 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
Y+ A N G + + P + P
Sbjct: 77 NYTLLAANPFGQASASIMAAFMDNPFEFNPEDP 109
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 2e-09
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 7/93 (7%)
Query: 216 WTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
W NG + E N + G L + + + G Y + + G+ S
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 272 TVIVEGPPGLP---GGVQVVEVHKTSATIQWTD 301
P + + +
Sbjct: 94 MAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE 126
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-06
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 11 CEAFGVPDVTYSWFRNGELLNS----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
G P + W NG +LN T LE ++ L + + Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTL 80
Query: 67 RAKNQLKTRYSSAQLRVL 84
A N +S +
Sbjct: 81 LAANPFGQASASIMAAFM 98
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 3e-12
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGR 135
SS QL VL + + T C E + K W K+G + R
Sbjct: 5 SSGQLEVL--------QDIADLT-VKAAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKR 53
Query: 136 RKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
I G L+I V +D G Y+ +L L
Sbjct: 54 ITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFL 96
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-07
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ CE VT W++NG + R I L I + PE D
Sbjct: 25 QAVFKCEVSD-EKVTGKWYKNGV-------EVRPSKRITISHVGRFHKLVIDDVRPE-DE 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y + SA+L L +K S
Sbjct: 76 GDYTFVPDGYALS--LSAKLNFLEIKVS 101
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-06
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 21/99 (21%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
++ T+ A +C E V W NGV + + I I
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDE---KVTGKWYKNGVEVR-------PSKRITIS 57
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVI 274
G L I + D G+Y V +S K +
Sbjct: 58 HVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 6e-12
Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP-----ITHYKIIARTNWNS 322
S+ P P V +V S + W R + I
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 323 TWFNVSEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
++ + YTG +E L P + Y+F++ + G E S T
Sbjct: 65 SYGVI-----------YTGYATRHVVEG-LEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112
Query: 382 PADKP 386
P
Sbjct: 113 RESGP 117
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIF 425
G S P P KP P GK+ SI W+ +EK+ P + F
Sbjct: 1 GSSGSSGMEPHKVVPLSKP-HPPV-----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRF 54
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ D + S + G VV T Y+ +++ + G S VV++
Sbjct: 55 SIEEEDPKMHSYGVIYTGYATRHVVEGLEPR--TLYKFRLKVTSPSGEYEYSPVVSV 109
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 7e-12
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 19/204 (9%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
PP P + + +W G T++ + + + ++
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKR------- 58
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS---RIG 394
+++ V + E V A N LG + P K P +
Sbjct: 59 --DTPTSCTVDYSTVYFVNIEVWVEAENALG---KVTSDHINFDPVYKVKPNPPHNLSVI 113
Query: 395 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 454
L ++W ++ + Y I +R K+ + + ++ + +
Sbjct: 114 NSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQD 170
Query: 455 EFYYTEYEVKVQAINDVGPGPESE 478
+TEY +++ + + G G S+
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGYWSD 194
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 4e-09
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 259 VVKSTVGKISTKT---TVIVEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYK 313
++ +GK+++ + + P P + V E + + WT+ + I Y
Sbjct: 81 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN 140
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
I RT STW + D + R ++++ L P++ Y F++ E G G S
Sbjct: 141 IQYRTKDASTWSQIPP------EDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWS 193
Query: 374 SPSPQYN--TPADKPYQAPS 391
S + + T D+P + PS
Sbjct: 194 DWSEEASGITYEDRPSKEPS 213
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 7e-12
Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 23/179 (12%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-- 142
KP E + VTI C N A ++ +G++ +
Sbjct: 7 KPFIW---AEPHFMVPKEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKV 60
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQ 199
I ++ +G YSC E L ++ Y + P + + +
Sbjct: 61 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 120
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
C T ++ G + ++ + + A G Y C
Sbjct: 121 FYCRLDTA---TSMFLLLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 169
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 3e-08
Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 11/156 (7%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
C+ V Y G L + P E ++ I +N Y C
Sbjct: 27 CCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINK-----VKFYIPDMNSR-MAGQYSCIY 79
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127
+ S L ++ + G VT +C + F+ K+G
Sbjct: 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEG 138
Query: 128 NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + PV+ G Y C +
Sbjct: 139 RSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 173
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 7e-12
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P P + + W +P N P + I++R D++ S+ K
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRP-TDSDNDSDYKK 61
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ I T Y++K+Q N+ G S V+
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-10
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
GP P V++T+ ++W N PI + I R + + + ++
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNT-PIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ ++ I + L P ++Y+ K+ NE G E S+ T A
Sbjct: 65 EGDRYWHS------ISH-LQPETSYDIKMQCFNEGGESEFSNVM-ICETKARSG 110
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 8e-12
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
SS S + + D P AP + + W+P+P + Y+I++ K +
Sbjct: 2 SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 433 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ E + +P ++ Y + V+ +N G GP S
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P PG V+V V+ T A + W + G + Y+I +S+ N H+ K
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH-LQGYRIYYWKTQSSSKRNR-RHIEKK 71
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ + + L P+S Y V N G G S +NTP
Sbjct: 72 ILTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 8e-12
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
+ PG P G+ EV TS + W A I Y+I R N +T + V+
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLN-TTTANTATVEVLAPS 83
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+YT L P S Y F++ A G+GE + P
Sbjct: 84 ARQYT------ATG-LKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-11
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 19/128 (14%)
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNA 417
+ +G G PS P T D P P I ++ + W+P P N
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVP-GPPMGI-----LFPEVRTTSVRLIWQP-P-AAPNG 56
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGP 475
+ Y+I R T + + P + Y ++ A G G
Sbjct: 57 IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP----ESVYLFRITAQTRKGWGE 112
Query: 476 ESEVVTIW 483
+E + +
Sbjct: 113 AAEALVVT 120
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 9e-12
Identities = 42/312 (13%), Positives = 80/312 (25%), Gaps = 32/312 (10%)
Query: 170 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
S + I + P + A N+ + C + T+ + + +
Sbjct: 193 SPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTK---------------VLSGQIG 237
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
P I++ G + I + + + T V PP +P +
Sbjct: 238 NTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297
Query: 290 VHKTSATIQWTDGAT---NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
W G G T Y + + S F ++ T
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF--------HRIEGLTNETYRL 349
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 406
+ + F + N LG + + N P+ + ++ S
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLG---QAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFS 406
Query: 407 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466
W N+ +I K N + V + YT Y +V+
Sbjct: 407 WY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVR 464
Query: 467 AINDVGPGPESE 478
+ S
Sbjct: 465 CSSK-TFWKWSR 475
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 1e-05
Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 33/285 (11%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G N+TI C + +I G+ N+ +S S + I T
Sbjct: 217 AGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS--GTNIIFITDD 274
Query: 163 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 216
+V+G G Y +P K++ H ++ CS + Y
Sbjct: 275 DVYGTVVFAG---------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV--- 273
+ + N L + + + ++ +G+ + +
Sbjct: 326 FESISGKSAVFHRIEGLTNETYR---LGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT 382
Query: 274 -IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
V P ++V +++ T T W + +I + +
Sbjct: 383 ERVAPHD--PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATI-- 438
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+++ L P++ Y F+V ++ + + S S
Sbjct: 439 ---RGAEDSTYHVAVDK-LNPYTAYTFRVRCSSK-TFWKWSRWSD 478
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 1e-11
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFEN 141
F ++P G ++T +A KP W K + +G ++ E
Sbjct: 8 ILFIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 142 GN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
+ I + +G Y C T D L V
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-07
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 239
P T+ ++ E+LL I W ++ L E + +
Sbjct: 14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 286
++I A AG Y C V S + V G +
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 6 DLTWTCEAFGVPDV---TYSWFRNG--ELLNSETLPLEDQDRYFIQDNV----LTIRYLN 56
D+T+ + + T WF+ +L + L+ ++ + V + I
Sbjct: 24 DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAK 83
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y+C + K S L V +
Sbjct: 84 DN-FAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-11
Identities = 35/222 (15%), Positives = 63/222 (28%), Gaps = 40/222 (18%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
GP + S IQW A I+ Y + R + E I +
Sbjct: 2 GPV--EVFITETPSQPNSHPIQWN--APQPSHISKYILRWRPKNSVGR--WKEATIPGHL 55
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP----------SSPSPQYNTPADKP 386
+ YT I+ L P YE ++I+ + G+ E S+P +
Sbjct: 56 NSYT------IKG-LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETT 108
Query: 387 YQAPSRIGG---GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF-QSETLKEY 442
+P +SW +++ + + + Q L
Sbjct: 109 PFSPLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLP-- 161
Query: 443 GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ +P +Y V V I++ G +
Sbjct: 162 STATSVNIPDLLPG----RKYIVNVYQISEDGEQSLILSTSQ 199
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 12/114 (10%)
Query: 261 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 320
ST +T T P + V E+ +S + W ++ +++ +
Sbjct: 94 TSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSE 150
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ I + L+P Y V +E G
Sbjct: 151 EGDE--PQYLDLPSTATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLIL 195
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-11
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ + W +P N P + I++R D++ S+ ++ I T Y+
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRP-TDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYD 79
Query: 463 VKVQAINDVGPGPESEVVTI 482
+K+Q N+ G S V+
Sbjct: 80 IKMQCFNEGGESEFSNVMIC 99
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-09
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P V T ++WT N PI + I R + + V+
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNT-PIQGFYIYYRPTDSDNDSDYKRDVVE- 61
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
++ I + L P ++Y+ K+ NE G E S+
Sbjct: 62 -----GSKQWHMIGH-LQPETSYDIKMQCFNEGGESEFSNV 96
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-11
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFEN 141
F RP + GG++T A P W K + G ++ ++
Sbjct: 5 GLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 142 GN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ L I+ +G Y C + D S L V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-06
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 239
P + ++ LL + W ++ L++ +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L IT+A A G Y C V + + + V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 9e-04
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 6 DLTWTCEAFGVPDV---TYSWFRNG--ELLNSETLPLEDQDRYFIQDNV----LTIRYLN 56
+T++ G + WF+ +L + L+ D Y V L I
Sbjct: 21 SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRV 83
P Y+C + K S+ L V
Sbjct: 81 PA-FTGSYRCEVSTKDKFDCSNFNLTV 106
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
+ K PLE + G +V + C A P W KD I + + G L
Sbjct: 9 AAIIK-PLEDQW-VAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+I S D+G Y+C +S L V
Sbjct: 66 VIRGASLKDAGEYTCEVEA----SKSTASLHV 93
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
D+ CE W ++ + + +Y + +L IR + + D
Sbjct: 25 DVELRCELSR-AGTPVHWLKDRK-------AIRKSQKYDVVCEGTMAMLVIRGASLK-DA 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C + S+A L V
Sbjct: 76 GEYTCEVEASK----STASLHV 93
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-06
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 187 PPKIT-------IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
P I +A +++LRC + V W + I ++ ++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPV--HWLKDRKAI-------RKSQKYDVV 57
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
+G + L I AS DAGEY C V+++ + ++ VE P
Sbjct: 58 CEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGP 100
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-11
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNII----GSGGRRKIFENG 142
PLE + G V + E + + +W K+G + R + ++G
Sbjct: 9 VLIVT-PLEDQQ-VFVGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 143 N---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L+ S V ++D G Y + + LIV
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 17/104 (16%)
Query: 184 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
P I + +++ E +W NGV + D +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE---GAQVMWMKNGVELTREDSFKARY-RF 60
Query: 237 NIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
DG L ++ D G Y+ + + +IVE
Sbjct: 61 KKDGKRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
E W +NG L E + RY + + +L + E D YQ
Sbjct: 29 AVEV-SEEGAQVMWMKNGVELTREDSF---KARYRFKKDGKRHILIFSDVVQE-DRGRYQ 83
Query: 66 CRAKNQLKTRYSSAQLRV 83
A+L V
Sbjct: 84 VITNGG----QCEAELIV 97
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 3e-11
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 109
L I + + D +Y+C Y ++V + K +
Sbjct: 82 LQITDVKLQ-DAGVYRCMISYG-GADYKRITVKV---NAPYNKINQRILVVDPVTSEHEL 136
Query: 110 FCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLIS-----PVSRDDSGIYSCTATN 163
C E PK + +W D ++ + L + ++ + I+ CT
Sbjct: 137 TCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR 196
Query: 164 VHGMDESKGRLIVLHGPSYYEQLPPKIT 191
+ + L++ P P + T
Sbjct: 197 LDPEENHTAELVIPELPL--AHPPNERT 222
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 7e-10
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)
Query: 101 AGEGGNVTIFC----NPEAAPKP-KFVWKKDGNIIGS---------------GGRRKIFE 140
G N+TI C + W+ + I R ++ +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 141 ------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
N L I+ V D+G+Y C + G D + + V P +
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPV 130
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFA 251
+L C A +V IWT + + + T N + L +T +
Sbjct: 131 TSEHELTCQAEGYPKAEV--IWTSSD---HQVLSGKTTTTNSKREEKLFNVTSTLRINTT 185
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ C + + + +++ P
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPELP 213
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 35/178 (19%)
Query: 187 PPK-ITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRI-----GNMDLNE------- 230
P + N+ + C +L + W I G DL
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 231 ---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 287
L +++ L+IT+ DAG Y C++ S G + TV V P +
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRIL 125
Query: 288 VEVHKTS-------------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
V TS A + WT ++ + ++ + FNV+ +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTS--SDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 4e-11
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 88 PSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P P + V + C + W KDG + + +G
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L++ DSG + C + + V
Sbjct: 67 LILPEAKVQDSGEFECRTEG----VSAFFGVTV 95
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 245
+T + L C D W +G ++ E+ + + DG L +
Sbjct: 20 LTFTTSERVVLTCELSRV---DFPATWYKDGQKV-------EESELLVVKMDGRKHRLIL 69
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
A D+GE+EC +S V V+ P G G
Sbjct: 70 PEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPSSG 104
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ TCE D +W+++G+ +E+ + ++ + L + + D
Sbjct: 27 RVVLTCELSR-VDFPATWYKDGQ-------KVEESELLVVKMDGRKHRLILPEAKVQ-DS 77
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
++CR + + + V
Sbjct: 78 GEFECRTEGV----SAFFGVTV 95
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 4e-11
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 43/180 (23%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ TC ++ W +NG+ L + D L ++ + D Y
Sbjct: 16 SVELTCPLDSDENLK--WEKNGQELPQKH------------DKHLVLQDFSEVEDSGYYV 61
Query: 66 CRAKNQLKTRYSSAQLRVLTLK----------------------PSFKKRPLESETYAGE 103
C K Y + RV + + K + L +
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
G+V + C W KDG+II K + ++D G Y C
Sbjct: 122 DGSVLLTCG---LTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-06
Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTAT 162
G +V + C + W+K+G + + +L++ S +DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVCYTP 65
Query: 163 N------------VHGMDESKGRLIVL-------HGPSYYEQLPPKITIAAHRN-----L 198
V D++K + K + + +
Sbjct: 66 ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSV 125
Query: 199 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L C + W +G I ++ + + N + G Y+C
Sbjct: 126 LLTCGLTDKT-----IKWLKDGSIISPLNATKNT----------WNLGNNAKDPRGTYQC 170
Query: 259 VVKSTVGKI 267
Sbjct: 171 QGAKETSNP 179
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-11
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
F++ + EGG T+ C + P W N++ G + + + G L
Sbjct: 9 VRFQEAL--KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
++ + DSG YSC+ G + L V PS
Sbjct: 66 VVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-07
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W + + ++ +G + L + N D+G Y C G +T
Sbjct: 40 KWCYGNNVL-------RPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTS 88
Query: 271 TTVIVEGPPGLP 282
T+ V P P
Sbjct: 89 ATLTVTALPSGP 100
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 4e-11
Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 19/186 (10%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRK 137
AQ P +S G+V I C A + + K+ G R K
Sbjct: 2 AQEGDFP-MPFIS---AKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLK 57
Query: 138 IFE--NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITI 192
+ + +I + + +G Y C H L ++ Y + + +
Sbjct: 58 FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL 117
Query: 193 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252
N+ L C + + + G +L+ + + +
Sbjct: 118 MPGENISLTC--SSAHIPFDRFSLAKEG------ELSLPQHQSGE-HPANFSLGPVDLNV 168
Query: 253 AGEYEC 258
+G Y C
Sbjct: 169 SGIYRC 174
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-09
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 10/160 (6%)
Query: 10 TCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCR 67
C+A +N + + +++ + + I +++ YQC+
Sbjct: 29 QCQAIREAYLTQLMIIKNSTYR-----EIGRRLKFWNETDPEFVIDHMDAN-KAGRYQCQ 82
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRP-LESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+ S L ++ K + G N+++ C+ P +F K+
Sbjct: 83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKE 142
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G + + N + PV + SGIY C
Sbjct: 143 GELSLPQHQSGEH-PANFSLGPVDLNVSGIYRCYGWYNRS 181
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-11
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 10/113 (8%)
Query: 276 EGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
GP P + V E + + W IT Y + + N + I
Sbjct: 6 SGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
R I + L + Y F++ A N G G S P + T
Sbjct: 66 ------GDRLTHQIMD-LNLDTMYYFRIQARNSKGVGPLSDPI-LFRTLKVSG 110
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 380 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 439
++ + P AP + + ++ P + N Y +F+ + +
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61
Query: 440 KEY-GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ G+ + T Y ++QA N G GP S+ +
Sbjct: 62 ETISGDRLTHQIMDLNL----DTMYYFRIQARNSKGVGPLSDPILF 103
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 5e-11
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+P ++VV TS I W ++ + +Y+I ++ V E +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSP--VQEFTVPYSSS 60
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
T I L P Y V A E G SP
Sbjct: 61 TAT------ISG-LSPGVDYTITVYAWGEDSAGYMFMYSP 93
|
| >3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L ISW+ ++ YY+I + + E + A + P +
Sbjct: 21 LLISWDA---PMSSSSVYYYRITYGETGGNSPVQEFTVP-YSSSTATISGLSP----GVD 72
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y + V A + G I
Sbjct: 73 YTITVYAWGEDSAGYMFMYSPI 94
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 5e-11
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S P T P AP + + + W+ P E+ N Y++++
Sbjct: 1 GSSGSSGPVLTQ-TSEQAPSSAPRDVQARMLSSTTILVQWKE-P-EEPNGQIQGYRVYYT 57
Query: 428 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + I + +P Y VKV A +G GP S + +
Sbjct: 58 MDPTQHVNNWMKHNVADSQITTIGNLVP----QKTYSVKVLAFTSIGDGPLSSDIQV 110
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P VQ + T+ +QW + I Y++ + N +H +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQ- 76
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+I N LVP TY KV+A +G G SS
Sbjct: 77 ------ITTIGN-LVPQKTYSVKVLAFTSIGDGPLSSD 107
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 5e-11
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-- 142
K + E + G +VTI C EA ++ K+G+ + +
Sbjct: 5 KATLW---AEPGSVISRGNSVTIRCQGTLEAQ---EYRLVKEGSPEPWDTQNPLEPKNKA 58
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQ 199
I ++ +G Y C + G E L ++ Y + P + + N+
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVT 118
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L+C + +I T G + L+ TP+ L + + + C
Sbjct: 119 LQCGSRLR---FDRFILTEEGDHKLSWTLDSQLTPS-GQFQALFPVGPVTPSHRWMLRC 173
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 6e-09
Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 17/165 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-NVLTIRYLNPERDPAMYQCRA 68
C+ + Y + G P + Q+ ++ +I + Y+C
Sbjct: 25 RCQG-TLEAQEYRLVKEGS-----PEPWDTQNPLEPKNKARFSIPSMTEH-HAGRYRCYY 77
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+ S L L + + K L G NVT+ C +F+ ++
Sbjct: 78 YSPAGWSEPSDPLE-LVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEE 135
Query: 127 GNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHG 166
G+ S + PV+ + C + H
Sbjct: 136 GDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-11
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P ++V +S ++ W + Y++ +
Sbjct: 5 SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEV--------KYHEKGAEGPSSV 56
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384
T A + L ++Y +V A +E GYG T D
Sbjct: 57 RFLKTSENRAELRG-LKRGASYLVQVRARSEAGYGPFGQEH-HSQTQLD 103
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P A S I LS++W P + + Y++ + +K S
Sbjct: 3 SGSSGP-PAVSDIRVTRSSPSSLSLAWAV-P-RAPSGAVLDYEVKYHEKGAEGPSSVR-- 57
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + Y V+V+A ++ G GP +
Sbjct: 58 -FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHS 98
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-11
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+P ++VV+ TS I W ++ + + +Y+I T+ +E
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRI--------TYGETGGDSPVQEFT 58
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNT 381
A+I L P Y V A + G + S Y T
Sbjct: 59 VPGYYSTATISG-LKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR--IPSEFYYT 459
L ISW+ YY+I + + D+ Q T+ G A + P
Sbjct: 24 LKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP--GYYSTATISGLKP----GV 75
Query: 460 EYEVKVQAINDVGPGPE-SEVVTI 482
+Y + V A + PG E + ++I
Sbjct: 76 DYTITVYAYDTFFPGYEPNSPISI 99
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 7e-11
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 12/111 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P P + V + WT + Y I + + +
Sbjct: 15 SQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYII----GYGVGSPYAETVRVDSK 69
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y+ IE L S Y + A N G G P S + P
Sbjct: 70 QRYYS------IER-LESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 23/121 (19%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS----ISWEPLPREKQNAPNIYYK 423
G S P + P PS + + + +SW P P N Y
Sbjct: 1 GSSGSSGPE-NDLDESQVP-DQPSSL-----HVRPQTNCIIMSWTP-PLN-PNIVVRGYI 51
Query: 424 IFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPG-PESEVV 480
I + + ET++ + + Y + ++A N+ G G P E
Sbjct: 52 IGYGVGSPYA---ETVRVDSKQRYYSIERLES----SSHYVISLKAFNNAGEGVPLYESA 104
Query: 481 T 481
T
Sbjct: 105 T 105
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN---LLIS 147
+ LE T A G V + C + W K+G I G R +I G L+I
Sbjct: 12 KQLEDTT-AYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ D+ YS T +S +L V
Sbjct: 70 GATKADAAEYSVMTTG----GQSSAKLSV 94
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-06
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 273
W NG I + I ++G L I A+ ADA EY + + +
Sbjct: 40 WFKNGEEIIPGPKSRYR---IRVEGKKHILIIEGATKADAAEYSVM----TTGGQSSAKL 92
Query: 274 IVEGPPGLPGG 284
V+ G G
Sbjct: 93 SVDLKSGPSSG 103
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
CE D WF+NGE + + RY I+ +L I D A Y
Sbjct: 28 ECEVSE-DDANVKWFKNGEEIIP-----GPKSRYRIRVEGKKHILIIEGATKA-DAAEYS 80
Query: 66 CRAKNQLKTRYSSAQLRV 83
SSA+L V
Sbjct: 81 VMTTGG----QSSAKLSV 94
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCT 160
G +VTI+C ++ K+ + + + I ++ D +G Y C
Sbjct: 18 WGNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
Query: 161 ATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 217
+ G + L ++ +Y + P + + +++ L C + + ++
Sbjct: 77 YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP---MDTFLLC 133
Query: 218 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
+ L ++ + G Y C
Sbjct: 134 KERAAHPLLCLR--SEHGAQQHQAEFPMSPVTSVHGGTYRC 172
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 20/165 (12%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCRA 68
C+ + Y + P + Q+ ++ +I + + Y+C
Sbjct: 25 WCQG-TLEAREYRLDKEES-----PAPWDRQNPLEPKNKARFSIPSMTED-YAGRYRCYY 77
Query: 69 KNQLKTRYSSAQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
++ + S L ++ KP+ P G +VT+ C + P F+
Sbjct: 78 RSPVGWSQPSDPLELVMTGAYSKPTLSALP---SPLVTSGKSVTLLCQSRS-PMDTFLLC 133
Query: 125 KDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVH 165
K+ R +SPV+ G Y C +++
Sbjct: 134 KERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGF 178
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 85 TL-KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFEN 141
TL KP E + VTI C N A ++ +G++ +
Sbjct: 1 TLPKPFIW---AEPHFMVPKEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERI 54
Query: 142 --GNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLHGPSYYEQL--PPKITIAAHR 196
I ++ +G YSC E S +V+ L P + +
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 114
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ C T ++ G + ++ + + A G Y
Sbjct: 115 KVTFYCRLDTA---TSMFLLLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTY 164
Query: 257 EC 258
C
Sbjct: 165 RC 166
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 12/151 (7%)
Query: 16 VPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74
V Y G L + P E ++ I +N Y C +
Sbjct: 29 YGAVEYQLHFEGSLFAVDRPKPPERINK-----VKFYIPDMNSR-MAGQYSCIYRVGELW 82
Query: 75 RYSSAQLRVLTLKPSFKKRPLES--ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS 132
S L L + + L G VT +C + A F+ K+G
Sbjct: 83 SEPSNLLD-LVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHV 140
Query: 133 GGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + PV+ G Y C +
Sbjct: 141 QRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 170
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V + T+A + W PI + + + + + + T
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPSDETTVD--LTSSITSLT- 58
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ N L P +TYE +++A N Y P S +
Sbjct: 59 -----LTN-LEPNTTYEIRIVARNGQQYSPPVSTT 87
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 2e-10
Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 12/206 (5%)
Query: 278 PPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PP P + ++ + S QW G P + R+ + + + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG--EPSSPSPQYNTPADKPY--QAPSR 392
+ L+ + V A N LG P + P
Sbjct: 64 RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIG 120
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 452
+ G L +SW+P ++ ++ + + TL + +
Sbjct: 121 PDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGA--NWTLVFHLPSSKDQFEL 176
Query: 453 PSEFYYTEYEVKVQAINDVGPGPESE 478
Y ++++ I PG S
Sbjct: 177 CGLHQAPVYTLQMRCIRSSLPGFWSP 202
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 2e-04
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
L G VV + W + ++ + + + H+
Sbjct: 115 QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS---- 170
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+ + + L Y ++ G S SP
Sbjct: 171 ---KDQFELCG-LHQAPVYTLQMRCIRSSLPGFWSPWSP 205
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 268 STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 326
S VI G PG P + +TS + WT + I +Y+++ + +
Sbjct: 6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-SD-TIANYELVYKDGEHGEEQR 63
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
++ ++ T ++ L P S Y F++ A + G G ++ + P
Sbjct: 64 IT-------IEPGT---SYRLQG-LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 25/122 (20%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S Q T P P + +SW P P ++ Y++ ++
Sbjct: 1 GSSGSSGDI-QVITQTGVP-GQPLNFKAEPESETSILLSWTP-P---RSDTIANYELVYK 54
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVV 480
E Q T++ P Y + Y ++ A + G G + +
Sbjct: 55 DGEHGEEQRITIE------------PGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
Query: 481 TI 482
+
Sbjct: 103 SA 104
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P + V S T+ W I Y+I ++ + +
Sbjct: 5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM------- 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ A I+ L P Y +V A GYG+ S
Sbjct: 58 --ARSQTNTARIDG-LRPGMVYVVQVRARTVAGYGKFSGK 94
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+++SW P E+ N + Y+I + +K EF S + A + P
Sbjct: 24 ITLSWPQ-P-EQPNGIILDYEIRYYEKEHNEFNSSMAR--SQTNTARIDGLRP----GMV 75
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y V+V+A G G S +
Sbjct: 76 YVVQVRARTVAGYGKFSGKMCF 97
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 262 STVGKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 320
+ T + + E P +P + V TS + WT + Y I
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAI------ 62
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
+ S H +VD + +IEN L P S Y + A N +G G P S
Sbjct: 63 --GYGIGSPHAQTIKVDYKQ--RYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
Query: 381 TPADKP 386
P
Sbjct: 118 PHTSGP 123
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 39/143 (27%)
Query: 364 GNELGYGEPSSPSPQYNTPADKPYQ-----APSRIGGGGGKIGDLS----ISWEPLPREK 414
G+ G P++ T + PS + + L +SW P P E
Sbjct: 1 GSSGSSG-PATDWLSAETFESDLDETRVPEVPSSL-----HVRPLVTSIVVSWTP-P-EN 52
Query: 415 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--------TEYEVKVQ 466
QN Y I + Q+ + + YY + Y + ++
Sbjct: 53 QNIVVRGYAIGYGI-GSPHAQTIKVD------------YKQRYYTIENLDPSSHYVITLK 99
Query: 467 AINDVGPG-PESEVVTIWHDPLV 488
A N+VG G P E
Sbjct: 100 AFNNVGEGIPLYESAVTRPHTSG 122
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 3e-10
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+ P E G + + C A W+ +G+ L +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTV 63
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
S +G C + + +L+V P QL + ++ C+AH
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP---NQLTVSPAALVPGDPEVACTAH 119
|
| >2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 5e-10
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PP + ++ + T+ W + I+ Y++ F + + +
Sbjct: 17 NPPSIR--EELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 337 DRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
++ ++ L + Y F V A N+ G + T + PS
Sbjct: 73 IVPNIKQNHYTVHG-LQSGTRYIFIVKAINQAGSRNSEPTRLK--TNSQPFKSGPS 125
|
| >1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 9e-10
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 21/141 (14%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---------DGATNGRPITHYKII 315
G + T E ++ + + W+ ++ + Y+++
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + +G+E ++ + L P Y KV A G PS
Sbjct: 64 ISSTGKDGKY--KSVYVGEET-------NITLND-LKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 376 SPQYNTPADKP-YQAPSRIGG 395
+ T + +P P RI G
Sbjct: 114 E-IFTTLSCEPDIPNPPRISG 133
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-09
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P + +V +A + W RP+ ++ ++ E
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQT-------EAP 56
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
A + L +TY +V G + A P PS
Sbjct: 57 G--NATSAMLGP-LSSSTTYTVRVTCLYPGGGSSTLTGRVT-TKKAPSPSSGPS 106
|
| >2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-09
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 12/109 (11%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
+ +P ++VV TS I W A + +Y+I ++ V
Sbjct: 18 KGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSP--V 72
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
E + T I L P Y V A L S
Sbjct: 73 QEFTVPGSKSTAT------ISG-LKPGVDYTITVYAVTGLRLMLAGSKP 114
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-09
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
+ P ++ +TS ++ W + NG I Y+I + + S
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYS------ 59
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
A++ L P + Y F+V A G G S
Sbjct: 60 --TLKAVTTRATVSG-LKPGTRYVFQVRARTSAGCGRFSQA 97
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ P I +S+ W+ P E+ N + Y+I + +K+ TLK
Sbjct: 6 SGQAAP-SQVVVIRQERAGQTSVSLLWQE-P-EQPNGIILEYEIKYYEKDKEMQSYSTLK 62
Query: 441 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
A V P T Y +V+A G G S+ + +
Sbjct: 63 --AVTTRATVSGLKP----GTRYVFQVRARTSAGCGRFSQAMEV 100
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-09
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
E PG G + E+ TS + W + G NG +T Y+I +W +
Sbjct: 15 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRI--------SWEEYNRTNTRV 65
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
E + L +TY +V A G G+ S+ + P P
Sbjct: 66 THYLPNVTLEYRVTG-LTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGP 116
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-07
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S P T D P + L +SW+ P ++N Y+I W
Sbjct: 1 GSSGSSGPQLVR-THEDVP-GPVGHLSFSEILDTSLKVSWQE-P-GEKNGILTGYRISWE 56
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+ N T + Y R+ T Y ++V A+ G G S
Sbjct: 57 EYNRTN---TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 107
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-09
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNII-----------GSGG 134
P +P A G +V+ C+ ++ F W D + + G
Sbjct: 11 PQITVQP--ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIV 176
+ L + V G Y C +N G S L +
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 7e-08
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----ELETPNINIDGG 241
P + ++ CSA + + + W + + + ++ + +
Sbjct: 17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTT 76
Query: 242 LLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 275
+L + N F G Y+CV+ + G S + +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-06
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 6 DLTWTCEAFGVPD--VTYSWFRNGELLNSETLP-----LEDQDRYFIQDNVLTIRYLNPE 58
D+++TC A D +T++W + E L + +L +R +
Sbjct: 27 DVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT 86
Query: 59 RDPAMYQCRAKNQLKTRYSS-AQLRV 83
YQC N + YS A L +
Sbjct: 87 -SEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-09
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P + + S + WT G + HY + +
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWT--PPLG-RVLHYWLTYAPASGLGP--EKSVSVPGA 59
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
T + + L + Y V A G E S
Sbjct: 60 RSHVT------LPD-LQAATKYRVLVSAIYAAGRSEAVS 91
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-09
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLS-----ISWE--PLPREKQNAPNIYYKIFWRKKNDTE 433
+ + P P + + LS I+W LP+ ++ + YY + W+
Sbjct: 3 SGSSGPMMPPVGV-----QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN 57
Query: 434 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + N + T YE V S
Sbjct: 58 TKYKNA----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 102
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 7e-09
Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHV 331
GP P GVQ + + I W D + +Y + +TN + + +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN- 64
Query: 332 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ L P + YEF V+ S + T
Sbjct: 65 --------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELSG 109
|
| >3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-09
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+P ++VV TS I W A++ +++Y+I T+ + +E
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWD--ASSS-SVSYYRI--------TYGETGGNSPVQEFT 52
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
A+I L P Y V A S
Sbjct: 53 VPGSSSTATISG-LSPGVDYTITVYAYYSYYDLYYSYS 89
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 8e-09
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 25/183 (13%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 138
Q L KPS + + VT+ C + +K + +
Sbjct: 1 GQSGPLP-KPSLQ---ALPSSLVPLEKPVTLRCQGPP-GVDLYRLEKLSS-------SRY 48
Query: 139 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAH 195
+ L I + R +G Y C+ N +L ++ + + P +++
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
++ L+C + G D + P I + A +G
Sbjct: 109 GDVTLQCQTRYG---FDQFALYKEG------DPAPYKNPE-RWYRASFPIITVTAAHSGT 158
Query: 256 YEC 258
Y C
Sbjct: 159 YRC 161
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-08
Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 20/159 (12%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C+ Y + + VL I + Y+C +
Sbjct: 28 RCQG-PPGVDLYRLEKLSSSRYQDQ-------------AVLFIPAMKRS-LAGRYRCSYQ 72
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127
N S QL L F K L + GG+VT+ C +F K+G
Sbjct: 73 NGSLWSLPSDQL-ELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRY-GFDQFALYKEG 130
Query: 128 NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
+ + + + I V+ SG Y C + +
Sbjct: 131 DPAPYKNPERWYR-ASFPIITVTAAHSGTYRCYSFSSRD 168
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 8e-09
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 276 EGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P P +Q+ + W I Y + + + W +
Sbjct: 5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQR----- 59
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
I+N L+ + Y +V A G G S
Sbjct: 60 ------AASNFTEIKN-LLVNTLYTVRVAAVTSRGIGNWSDS 94
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET 438
+ + P AP + + + I W P P + Y + + + + S+
Sbjct: 3 SGSSGP-DAPRNLQLSLPREAEGVIVGHWAP-P-IHTHGLIREYIVEYSRSGSKMWASQR 59
Query: 439 LKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
I + T Y V+V A+ G G S+ +I
Sbjct: 60 AAS------NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSI 97
|
| >3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 8e-09
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P +QV V TS T+ WT + IT Y+I + E + T
Sbjct: 5 PTDLQVTNVTDTSITVSWT--PPSA-TITGYRITYTPSNGPGE--PKELTVPPSSTSVT- 58
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
I L P Y V A + P +
Sbjct: 59 -----ITG-LTPGVEYVVSVYALKDNQESPPLVGT 87
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-08
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNST 323
+ + P P GVQ V + + + W D + + Y + RT+++++
Sbjct: 8 FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
YT L P + YEF V+ S + T
Sbjct: 68 A---KYKSEDTTSLSYT------ATG-LKPNTMYEFSVMVTKNRRSSTWSMTAHAT-TYE 116
Query: 384 DKP 386
Sbjct: 117 ASG 119
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-07
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 20/119 (16%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEP--LPREKQNAPNIYYKIF 425
SS P P P + + L+ +SW +P+ ++ + Y +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGV-----QAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR 59
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
WR + ++ P T YE V + S
Sbjct: 60 WRTSFSASAKYKSED--TTSLSYTATGLKP----NTMYEFSVMVTKNRRSSTWSMTAHA 112
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-08
Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 25/171 (14%)
Query: 17 PDVTYSWFRNGELLNSETL----------PLEDQDRYFIQDNV------LTIRYLNPERD 60
P + WFR+GE+ + E Q R+ + +V L+I E D
Sbjct: 35 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARME-D 93
Query: 61 PAMYQCRAKNQLKTRYSSAQLRV-LTLKPSFKKRPLESETYAGEGGNVTIFC----NPEA 115
Y R + +YS Q ++ L + +K + G + C + EA
Sbjct: 94 TGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEA 153
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
P F W + + + L ++P D +C
Sbjct: 154 GPPLTFSWTGNALSPLDP---ETTRSSELTLTPRPEDHGTNLTCQMKRQGA 201
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-06
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 43/207 (20%)
Query: 103 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSG-----------------GRRKI 138
EG V + C + ++P W +DG I GR ++
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 139 F-----ENGNLLISPVSRDDSGIYSC---TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 190
+N +L I +D+G Y +V + + + +
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133
Query: 191 TIAAHRNLQLRCSAHT--EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248
+ + R +L CS E + + WT N + L +T
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---------PLDPETTRSSELTLTPR 184
Query: 249 SFADAGEYECVVKSTVGKISTKTTVIV 275
C +K +++T+ TV +
Sbjct: 185 PEDHGTNLTCQMKRQGAQVTTERTVQL 211
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-08
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 25/207 (12%)
Query: 16 VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75
V + R G+ ++ L E D +I + + Y+C
Sbjct: 32 VRFQHFLLHREGKFKDTLHLIGEHHDGVS--KANFSIGPMMQD-LAGTYRCYGSVTHSPY 88
Query: 76 YSSA-------QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128
SA + L KPS +P G +VT+ C+ + + ++G
Sbjct: 89 QLSAPSDPLDIVITGLYEKPSLSAQP---GPTVLAGESVTLSCSSRS-SYDMYHLSREGE 144
Query: 129 IIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGR-----LIVLHG 179
NG + + P + G Y C + E + V
Sbjct: 145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN 202
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHT 206
PS P + + L +A
Sbjct: 203 PSNSWPSPTEPSSETGNPRHLHAAAEQ 229
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 3e-08
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 22/168 (13%)
Query: 103 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGI 156
V + C + F+ ++G + +G N I P+ +D +G
Sbjct: 20 SEETVILQCWSDVRFQ---HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGT 76
Query: 157 YSCTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELL 210
Y C + H + S IV+ G L P T+ A ++ L CS+ +
Sbjct: 77 YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS--- 133
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
Y + G + G Y C
Sbjct: 134 YDMYHLSREGEAHERRFSA----GPKVNGTFQADFPLGPATHGGTYRC 177
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-08
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V +V T+A I W + P+ +++ +D
Sbjct: 6 PSQIEVKDVTDTTALITWM--PPSQ-PVDGFELTYGIKDVPGDR--------TTIDLTED 54
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ SI N L P + YE +I+ P+ + + T
Sbjct: 55 ENQYSIGN-LKPDTEYEVSLISRRGDMSSNPAKET--FTTGLAAA 96
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 28/248 (11%), Positives = 63/248 (25%), Gaps = 22/248 (8%)
Query: 254 GEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 309
E + +++ S + P V + E + I + G +
Sbjct: 76 EEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHISPGTKDSVMW 134
Query: 310 THYKI-----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 364
+ + +S E++ + L P +TY KV A
Sbjct: 135 ALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK-----------LSPETTYCLKVKAA 183
Query: 365 NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 424
+ + P + + + W+ +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQAINDVGPGPESEVVTIW 483
R + ++ + + + NV P Y ++VQA + SE +
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303
Query: 484 HDPLVIIS 491
+ +
Sbjct: 304 TEIQAFLL 311
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 1e-06
Identities = 37/318 (11%), Positives = 76/318 (23%), Gaps = 42/318 (13%)
Query: 187 PPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL--NELETPNINIDGGLL 243
PP++ + A + + + S T++ + +W +G+ + I+
Sbjct: 108 PPEVHLEAEDKAIVIHISPGTKD----SVMWALDGLSFTYSLVIWKNSSGVEERIENIYS 163
Query: 244 EITNASFADAGEYECVVKSTV-------GKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 296
+ Y VK+ + P V V +
Sbjct: 164 RHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 223
Query: 297 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356
++W N + + +
Sbjct: 224 LKWDYTYANMTFQVQWLHAFLKRNPGNH---LYKWKQIPDCENVKTTQCVFPQNVFQKGI 280
Query: 357 YEFKVIAGNELGYGEPS---SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE 413
Y +V A + S + P + I P++
Sbjct: 281 YLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDS------FHIYIGA-PKQ 333
Query: 414 KQNAP-----NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468
N P + Y+I + + + K+ V +P+ T Y VK +A
Sbjct: 334 SGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTD------VTVPNLKPLTVYCVKARAH 387
Query: 469 NDVG----PGPESEVVTI 482
S+ V
Sbjct: 388 TMDEKLNKSSVFSDAVCE 405
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-08
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 150
EGG + C + W +K + ++ +S VS
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
D G Y+C+ + SK L VL P
Sbjct: 80 LSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-06
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN- 235
+ G L +T+ L C + + W++ + D + N
Sbjct: 3 VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNR 60
Query: 236 ---INIDGG--LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + +++ S +D G+Y C + T+ ++K + V G P
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-08
Identities = 24/216 (11%), Positives = 51/216 (23%), Gaps = 24/216 (11%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P + V + W G T+Y + +++
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLD-TNYNLFYWYEGLDHALQCVDYI-----K 189
Query: 338 RYTGRKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ + + V +E S + P +
Sbjct: 190 ADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVYLTFT 247
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456
++ + W P A Y+I R+ + T + E + +
Sbjct: 248 RESSCEIKLKWSI-PLGPIPARCFDYEIEIREDDTTLVTATVENE-------TYTLKTTN 299
Query: 457 YYTEYEVKVQAINDVGP---GPESEVVTIWHDPLVI 489
+ V++ ++ G SE W D
Sbjct: 300 ETRQLCFVVRSKVNIYCSDDGIWSE----WSDKQCW 331
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 5e-08
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 103 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYS 158
+G VT+ C E ++ ++ R ++ + G I ++ + +G Y
Sbjct: 18 QGSPVTLRCQGGQETQ---EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 159 CTATNVHGM--DESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAY 214
C + + S +V+ G L P + + N+ L+C + +
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA---FDGF 131
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
I G LN + + S + Y C
Sbjct: 132 ILCKEGEDEHPQCLNSQPHAR-GSSRAIFSVGPVSPSRRWWYRCY 175
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 22/167 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSET-LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
C+ G Y +R + T +P E + I + E Y+C
Sbjct: 25 RCQG-GQETQEYRLYREKKTAPWITRIPQELVKK-----GQFPIPSITWE-HTGRYRCYY 77
Query: 69 KNQLKTRY-SSAQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+ R SS L ++ KP+ +P GGNVT+ C+ F+
Sbjct: 78 GSDTAGRSESSDPLELVVTGAYIKPTLSAQP---SPVVNSGGNVTLQCD-SQVAFDGFIL 133
Query: 124 KKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVH 165
K+G + PVS Y C A + +
Sbjct: 134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN 180
|
| >1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 1e-07
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 10/200 (5%)
Query: 271 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 330
+ G P + + + + WTD +G + ++
Sbjct: 22 NPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY--TRRNTQEWTQE 79
Query: 331 VIGKEVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 389
G + Y K+ + + S
Sbjct: 80 WKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNW 139
Query: 390 PSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447
G D+ + WE ++ + Y++ +++ N+T++ K +
Sbjct: 140 TLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-----KMMDPILT 194
Query: 448 AVVRIPSEFYYTEYEVKVQA 467
V + S EYEV+V++
Sbjct: 195 TSVPVYSLKVDKEYEVRVRS 214
|
| >2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-07
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S+ ++ P P + + V + + W THY +
Sbjct: 2 SSGSSG----PLPPPRALTLAAVTPRTVHLTWQ----PSAGATHYLV--------RCSPA 45
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S +E + GR E ++ L P YE V + E + TP P
Sbjct: 46 SPKGEEEEREVQVGRPEVLLDG-LEPGRDYEVSVQSLRGPEGSEARGIRAR--TPTSGP 101
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 18/242 (7%)
Query: 245 ITNASFADAGEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
++ E + +++ S + P V + E + I +
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHIS 121
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG-KEVDRYTGRKEASIENVLVPWSTYEF 359
P T ++ + S +++ +R L P +TY
Sbjct: 122 -------PGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCL 174
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
KV A + + P + + + W+
Sbjct: 175 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYA--NMTFQ 232
Query: 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAV---VRIPSEFYYTEYEVKVQAINDVGPGPE 476
+ + + K+N + + + V + F Y ++VQA +
Sbjct: 233 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292
Query: 477 SE 478
SE
Sbjct: 293 SE 294
|
| >4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 18/203 (8%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P + V+ + + W+ G +Y + + + S + S I T
Sbjct: 10 PQQLSVLSTN-MKHLLMWSPVIAPG-ETVYYSVEYQGEYESLY--TSHIWIPSSWCSLTE 65
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 401
E + + + Y +V A S +N + + I G +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL- 124
Query: 402 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461
I E L + +WR++ E + ++ G V + + Y
Sbjct: 125 --VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSGGIP----VHLETMEPGAAY 173
Query: 462 EVKVQAINDV--GPGPESEVVTI 482
VK Q S+ +
Sbjct: 174 CVKAQTFVKAIGRYSAFSQTECV 196
|
| >1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P G+ +V S I W + G ++ Y++ + + E D
Sbjct: 5 PKGLAFTDVDVDSIKIAWE--SPQG-QVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAE- 58
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
++ L P S Y V+A ++ +P
Sbjct: 59 -----LQG-LRPGSEYTVSVVALHDDMESQPLI 85
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 2e-07
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
Q L T + + L + ET GG V + C + W
Sbjct: 15 QHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDET-VVAGGTVVLKCQVKDHEDSSLQWS 73
Query: 125 KDGNIIGSGGRRKIFENG------------NLLISPVSRDDSGIYSCTATNVHGMDESKG 172
G ++ + ++ IS V+ D G Y+C+ + +K
Sbjct: 74 NPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKS 132
Query: 173 RLIVLHGPSYYEQLPPKI 190
+ VL P P I
Sbjct: 133 LVTVLGIPQ-----KPII 145
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-06
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 218
+ ++ D+ K + + T+ A + L+C ++ D + W++
Sbjct: 17 MDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC--QVKDHEDSSLQWSN 74
Query: 219 NGVRI-GNMDLNELETPNINIDGG-----LLEITNASFADAGEYECVVKSTVGKISTKTT 272
+ + L I + + I+N + AD GEY C + T+ + K+
Sbjct: 75 PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133
Query: 273 VIVEGPPGLP 282
V V G P P
Sbjct: 134 VTVLGIPQKP 143
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-07
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 103 EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKI-----------FENGNLLISPVS 150
EG +T+ C W G I + ++ + V+
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
D G+Y C + + + ++IVL
Sbjct: 75 LQDEGVYKCLHYS-DSVSTKEVKVIVLATMK 104
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 8e-07
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----D 239
IT+ + L L+C + + ++ T +G I + L+ + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWL-TPSGFTIFLNEYPVLKNSKYQLLHHSAN 64
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
+ + N + D G Y+C+ + + + VIV
Sbjct: 65 QLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEF---------------- 107
Query: 300 TDGATNGRPITHY 312
++ RP+ H+
Sbjct: 108 CRYPSHWRPLEHH 120
|
| >1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-07
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 18/89 (20%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+ ++W Q Y++ +R+ + + S ++P+E
Sbjct: 32 VQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNL-------DAKVPTERSAVLVN 81
Query: 458 ---YTEYEVKVQAINDVGPGPESEVVTIW 483
YE+KV+ + G +SE T+
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVR 110
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 158
V + C + F+ ++G + +G N IS +++D +G Y
Sbjct: 21 SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 159 CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 212
C + H + S IV+ G L P T+ A N+ L CS+ +
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS---YD 136
Query: 213 AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYEC 258
Y + G + +E P G + G Y C
Sbjct: 137 MYHLSREG------EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
|
| >2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-07
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKE 335
G + V E+ +S + W + ++ +++ + +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEP---QYLDLPST 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378
I + L+P Y V +E G + Q
Sbjct: 58 ATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLILSTSQ 93
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 3e-07
Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 25/231 (10%)
Query: 272 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR------PITHYKIIARTNWNSTWF 325
T+ P P +Q+ + + W+ + + ++++ + +S W
Sbjct: 102 TLTQHVQPPEPRDLQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS-WE 159
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP----QYNT 381
+ + + L+P STY +V G PS
Sbjct: 160 DAAILLSNTSQATLGPEH-------LMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD 212
Query: 382 PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 441
P + LS SWE K+ A ++ + +F++ D +E
Sbjct: 213 SQPGDEAQPQNLECFFDGAAVLSCSWEV---RKEVASSVSFGLFYKPSPDAGSAVLLREE 269
Query: 442 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPLVIISY 492
+ V+R +T + ++ + G V I S
Sbjct: 270 ECSP---VLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSS 317
|
| >2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 5e-07
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P ++ + + + A + W P+ Y I +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPGAPPL----QAETPGSAV 59
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y + + LV + Y V P+S + + T + P
Sbjct: 60 DYP------LHD-LVLHTNYTATVRGLRGPNLTSPASIT--FTTGLEAP 99
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 76/516 (14%), Positives = 136/516 (26%), Gaps = 172/516 (33%)
Query: 16 VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER---------------- 59
V D+ S E+ + + +L+ E
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQEEMVQKFVEEVLRINYKF 93
Query: 60 --DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
P + R + + Y + R+ F K NV
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------------NV---------S 132
Query: 118 KPKFVWK---------KDGNII--GSGGRRKIFENGNLLISPVSRD-------DSGIYSC 159
+ + K N++ G G K + V D I+
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWL 187
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWT 217
N + + L +L Q+ P T + N++LR + EL +
Sbjct: 188 NLKNCN---SPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 218 HNGVRIGNMDLNELETPNI----NIDGGLLEIT-NASFADAGEYECVVKSTVGKISTKTT 272
+ + L ++ N+ +L T D + +T
Sbjct: 243 YENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF----------LSAATTTHI 289
Query: 273 VIVEGPPGLPGGVQVVEVHKTSATI--QWTDG--------ATNGRPITHYKIIART--NW 320
+ L ++ ++ D P IIA + +
Sbjct: 290 SLDHHSMTL--------TPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDG 340
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
+TW N +HV D+ T E+S+ NVL P E++ +
Sbjct: 341 LATWDN-WKHV---NCDKLTTIIESSL-NVLEP---AEYR-----------------KM- 374
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR--KKNDTEFQSET 438
+ LS+ P + P I + W K+D
Sbjct: 375 ------FD-------------RLSV----FP-PSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 439 LKEYGNVGIAVVRIPSEFYYTEY----EVKVQAIND 470
L +Y V + P E + E+KV+ N+
Sbjct: 411 LHKYS----LVEKQPKESTISIPSIYLELKVKLENE 442
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 5e-07
Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 49/205 (23%)
Query: 103 EGGNVTIFCNPEAAPKPKFV-WKKDG-----------------------NIIGSGGRRKI 138
G +V + C P + W + G ++
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 139 FENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSY---YEQLPPKITIAA 194
G L+++ D Y C G E+ RL V P +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 195 HRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGN----MDLNELETPNINIDGGL--- 242
C++ W NG R+ + + + GL
Sbjct: 134 SAQEIATCNSRN------GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 243 ---LEITNASFADAGEYECVVKSTV 264
L + + C ++
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSL 212
|
| >3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 6e-07
Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 35/223 (15%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P VQ + +QW G + Y + + W N +
Sbjct: 5 THESLKPQRVQFQSRN-FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCW---- 59
Query: 336 VDRYTGRKEASIENV-LVPWSTYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPS 391
T + + Y +V A G+ + +P + T D P +
Sbjct: 60 ---GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116
Query: 392 RIGGGGGKIGDLSISWEPLPREKQNAP----------NIYYKIFWRKKNDTEFQSETLKE 441
++ G L + + + Y++F N E + + +
Sbjct: 117 QVN------GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKVYEG 169
Query: 442 YGNVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 482
V I + ++ Y V + + SE +
Sbjct: 170 AHR----AVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCV 208
|
| >3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-07
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 293 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG----KEVDRYTGRKEASIE 348
T T +W+ + ++ R + +S + + + K+ + I
Sbjct: 16 TKMTCRWSTSTIQSLAESTLQL--RYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73
Query: 349 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISW 407
+ S Y + + LG SP + PS + IG L ISW
Sbjct: 74 QPIFLLSGYTMWIRINHSLG--SLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISW 131
Query: 408 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467
E + N + ++I + E Q + + Y +V +P Y V+V+
Sbjct: 132 EKPVFPENN---LQFQIRYGLSGK-EVQWKMYEVYDAKSKSVS-LPVPDLCAVYAVQVRC 186
Query: 468 INDVGPGPESE 478
G G S
Sbjct: 187 KRLDGLGYWSN 197
|
| >3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-07
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 14/94 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKEVDRYT 340
P + V EV + S + WT A + + I + + Y
Sbjct: 5 PKNLVVSEVTEDSLRLSWT--APDA-AFDSFMIQYQESEKVGEA---INLTVPGSERSYD 58
Query: 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ L P + Y + P S
Sbjct: 59 ------LTG-LKPGTEYTVSIYGVKGGHRSNPLS 85
|
| >1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 7e-07
Identities = 28/215 (13%), Positives = 54/215 (25%), Gaps = 18/215 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII-ARTNWNSTWFNVSEHVIGKEV 336
P + W + A+ G Y + + + +
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
R+ + + E +V A + G P + +
Sbjct: 80 VRFWCSLPTA---DTSSFVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARL 132
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456
+ G + + W P P E +I Y++ G + +
Sbjct: 133 ADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT---ECVLSNLR 188
Query: 457 YYTEYEVKVQAINDVGP--GPESEVVTIWHDPLVI 489
T Y V+A G SE W +P+ +
Sbjct: 189 GRTRYTFAVRARMAEPSFGGFWSE----WSEPVSL 219
|
| >2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-07
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++ EV +A + WT+ Y + T T E ++ + +
Sbjct: 11 PRDLEAKEVTPRTALLTWTEPPV---RPAGYLLSFHTPGGQTQ----EILLPGGITSHQ- 62
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ L P ++Y ++ A P S S
Sbjct: 63 -----LLG-LFPSTSYNARLQAMWGQSLLPPVSTS 91
|
| >4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-06
Identities = 28/220 (12%), Positives = 53/220 (24%), Gaps = 27/220 (12%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
V G P + + ++ +QWT Y + W N SE
Sbjct: 5 VSGGLPKPANITFLSIN-MKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC---- 59
Query: 335 EVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 393
R R + Y +V A + S ++ + P
Sbjct: 60 ---RNINRTYCDLSAETSDYEHQYYARVRAIWGTKCS-KWAESGRFYPFLETQIGPPEVA 115
Query: 394 GGGGGKIGDLSISWEPLPREKQNA---------PNIYYKIFWRKKNDTEFQSETLKEYGN 444
K + ++ + N+ Y + S+ + +
Sbjct: 116 LTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH-- 173
Query: 445 VGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 482
+ + T Y V V++ SE
Sbjct: 174 ----TLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCA 209
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
L ++W N+ Y++ +++ Q + P T Y
Sbjct: 26 LELTWAGSRPRNPG-GNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ----P----DTTYI 76
Query: 463 VKVQAINDVGPGPESEVVTI 482
V+V+ + +GPGP S
Sbjct: 77 VRVRTLTPLGPGPFSPDHEF 96
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-05
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 20/119 (16%)
Query: 275 VEGPPGLPG-GVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVI 332
G L G +++V+ + W Y++
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ------------- 51
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
+E + + L P +TY +V LG G P SP ++ T P PS
Sbjct: 52 DEEWHQMVLEPRVLLTK-LQPDTTYIVRVRTLTPLGPG-PFSPDHEFRT---SPPSGPS 105
|
| >3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
G +P ++VV TS I W + G +Y+I ++ V E + V
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISWD--SGRG-SYQYYRITYGETGGNSP--VQEFTVPGPV 56
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ-------YNTPADKPYQ 388
T I L P Y V A + + Y T DKP Q
Sbjct: 57 HTAT------ISG-LKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 41/203 (20%)
Query: 101 AGEGGNVTIFC----NPEAAPKPKFVWKKDGNII---GSG---------GRRKIFENGN- 143
T+ C + E + + W+K+ ++ SG R N
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR---NLQ 199
++I + D G Y C + L + + P I+ +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 200 LRCSAH------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASF 250
+ CS W NG + T + + + L ++ + +
Sbjct: 126 IICSTSGGFPEPH-------LSWLENGEEL----NAINTTVSQDPETELYAVSSKLDFNM 174
Query: 251 ADAGEYECVVKSTVGKISTKTTV 273
+ C++K +++
Sbjct: 175 TTNHSFMCLIKYGHLRVNQTFNW 197
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 48.2 bits (113), Expect = 3e-06
Identities = 44/305 (14%), Positives = 79/305 (25%), Gaps = 51/305 (16%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ L C E+ WT + + + G L I F DAG+Y
Sbjct: 23 MVVLTCDTPEED----GITWTLDQ------------SSEVLGSGKTLTIQVKEFGDAGQY 66
Query: 257 ECVVKSTV-------------GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA 303
C V G ST + P + + T W
Sbjct: 67 TCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTT- 125
Query: 304 TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP-------WST 356
+ K ++ + + + V E S+E
Sbjct: 126 ISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLP 185
Query: 357 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 416
E V A ++L Y S + KP + + +SWE P
Sbjct: 186 IEVMVDAVHKLKY--EQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY-PDTWST 242
Query: 417 APNIY---YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP 473
+ + + + + K+ E + + + + + V+A +
Sbjct: 243 PHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC--------RKNASISVRAQDRYYS 294
Query: 474 GPESE 478
SE
Sbjct: 295 SSWSE 299
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306 | Back alignment and structure |
|---|
Score = 47.4 bits (111), Expect = 5e-06
Identities = 33/301 (10%), Positives = 72/301 (23%), Gaps = 52/301 (17%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTA 161
G V + C + + W D ++ +G L I D+G Y+C
Sbjct: 20 PGEMVVLTC--DTPEEDGITWTLDQ-------SSEVLGSGKTLTIQVKEFGDAGQYTCHK 70
Query: 162 TN-----VHGMDESKGRLIVLHGPSYYEQLPPKIT----IAAHRNLQLRCSAHTEELLDV 212
+ K I ++ P T A + + + C T D+
Sbjct: 71 GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL 130
Query: 213 AYIWT----HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE----------YEC 258
+ + + L + D E + D+
Sbjct: 131 TFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMV 190
Query: 259 VVKSTVGKISTKTTVIVE--GPPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI- 314
+ ++ + P P +Q+ + + + W T P +++ +
Sbjct: 191 DAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250
Query: 315 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 372
+ + ++ V A +
Sbjct: 251 FCVQVQGKSKREKKDRVFTDKTSAT-------------VICRKNASISVRAQDRYYSSSW 297
Query: 373 S 373
S
Sbjct: 298 S 298
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 24/111 (21%)
Query: 100 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFE------------NGN 143
G NVT+ + + W + + + K FE +G
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 144 LLISPVSRDDSGIYSCTATNVHG-MDESKGRLIVLHGPSYYEQLP-PKITI 192
L IS V ++D+ Y G E K +L V + +P P I I
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV------LDPVPKPVIKI 119
|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590 | Back alignment and structure |
|---|
Score = 48.9 bits (115), Expect = 3e-06
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 105 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
+ C E+ + W+ N+ S N L I ++ G Y C A
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-06
Identities = 23/115 (20%), Positives = 29/115 (25%), Gaps = 17/115 (14%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---I 130
SS F K+P G + + KP W K +
Sbjct: 2 SSGSSGAEEPTGVFLKKP--DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS 59
Query: 131 GSGGRRKIFENGN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
SG R E+ N L I V D G Y D + V
Sbjct: 60 KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-05
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI------WTHNGVRIG-NMDLNELETPNINID 239
P +++ ++ + + +EL D I W G + G E N+
Sbjct: 19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY 78
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
L I D G Y VK+ S + VE P
Sbjct: 79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-06
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFV--WKKDGNIIGS-------------GGRRKIFE 140
A +GG++ + C+ + W++ ++ R
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 141 NGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPS 181
L + ++ +D+G Y C T G + L VL
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 8e-06
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 50/233 (21%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFV-WKKDGN----- 128
+ Q VL A G + + C P + + + W
Sbjct: 1 ADLQFSVLGPSGPIL---------AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN 51
Query: 129 ------------IIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDES 170
GR I +G L I V+ DSG Y C + +++
Sbjct: 52 VYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKA 111
Query: 171 KGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
L V S + + ++ + L C + W++N +
Sbjct: 112 LVELKVAALGS-----DLHVDVKGYKDGGIHLECRST-GWYPQPQIQWSNNKGEN----I 161
Query: 229 NELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+E P + GL + + C ++S++ + ++ + P
Sbjct: 162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214
|
| >2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 9e-06
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
G + V +V +S + W + + ST ++ +E
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQRE 62
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ R A + + L + Y + +
Sbjct: 63 LMVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQ 100
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 1e-05
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 117 PKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
+ WK + + + NLLI +S DSG+Y C + +++ +++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVV 618
Query: 176 VLHGPSYYEQLPPKITIA 193
H ++ PK +A
Sbjct: 619 AKHVLE--VKVVPKPVVA 634
|
| >1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCT 160
G V + C P + +W+ + IG + + +L + S + SG Y C
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 161 ATNVHGMDES 170
D +
Sbjct: 79 PRGSKPEDAN 88
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 29/177 (16%)
Query: 8 TWTCEAFGV--PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
++TCE+ G D+T WF+NG L+ + + + + + L E +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV-LTREDVHSQ 194
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG----EGGNVTIFC-----NPE 114
C + T S R + V + C P+
Sbjct: 195 VICEVAHV----TLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 250
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTATN 163
+ W ++GN+ + + EN + LL++ + D +C +
Sbjct: 251 RL---QLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 38/213 (17%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P V++ V+ +QW A +T + + ++ T
Sbjct: 5 PENVRMNSVN-FKNILQWESPAFAKGQLT-FTAQYLSYRI-----------FQDKCMQTT 51
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 401
E + L + + +V A E S +P D P +
Sbjct: 52 LTECDFSS-LSKYGDHTLRVRAEFA---DEHSDWVQITFSPVDDTIIGPPGMQVEVLA-D 106
Query: 402 DLSISWEPLPREKQNAPNI----------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVR 451
L + + P+ + Y +W++ D +FQ ++
Sbjct: 107 CLHMRFLA-PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDF-------EV 158
Query: 452 IPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 482
+ + +T Y V+V+ G SE V
Sbjct: 159 LRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCE 191
|
| >1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 351 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE-P 409
+V Y + AG +L + PS KP +AP + L ++W P
Sbjct: 68 VVSADNYTLDLWAGQQLLWKGSFKPSEHV-----KP-RAPGNLTVHTNVSDTLLLTWSNP 121
Query: 410 LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAI 468
P + ++ Y + +ND + + ++ S Y +V+A
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPA--DFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 179
Query: 469 NDVGPGPESE 478
SE
Sbjct: 180 AQAYNTTWSE 189
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 14/108 (12%), Positives = 24/108 (22%), Gaps = 10/108 (9%)
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPK 120
C + +T + +R + PL GE N T+ C
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGE--NFTLSCRVPGAGPRASLT 123
Query: 121 FVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATN 163
+ + + D +SC A
Sbjct: 124 LTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 1e-04
Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 19/213 (8%)
Query: 265 GKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323
+ K EG P +Q + + + W G N P T+Y +
Sbjct: 83 SILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG-RNTSPDTNYTLYYWHRSLEK 141
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
+Y G + + + +++ + G S + T
Sbjct: 142 IHQCENIF---REGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKI-KPSFNIVPLTSR 197
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
KP P I DL + WE + + ++Y++ ++E
Sbjct: 198 VKP--DPPHIKNLSFHNDDLYVQWEN--PQNFISRCLFYEVEVNNSQTETHNVFYVQEAK 253
Query: 444 NVGIAVVR---------IPSEFYYTEYEVKVQA 467
R +P T V+++
Sbjct: 254 CENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
|
| >2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} Length = 105 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 103 EGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G VT+ C+ P+ +G + + K + + + +D+G Y C
Sbjct: 18 LGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
|
| >4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus} Length = 102 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 104 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80
|
| >2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 5e-04
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIG-GGGGKIGDLSISWEPLPREKQNAPN----IYYKI 424
G S +++T P P + G + +SW P N Y +
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
+ + + E T V + V V+ ++ G +S V +
Sbjct: 61 YAKGQRVAEVIFPTA------DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPP 114
Query: 485 DPLV 488
+ LV
Sbjct: 115 ELLV 118
|
| >4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus} Length = 118 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 6e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 104 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIY 82
Query: 162 TNVHGMDESKGRL-IVLHGPSYYEQLPPKIT 191
+ E L + + + + P T
Sbjct: 83 SKGITWSERSKTLELKVIKENVIQTPAPGPT 113
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 8e-04
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 10/76 (13%)
Query: 216 WTHNGVRIGNMDLNELETPN-----INIDGGL--LEITNASFADAGEYECVVKSTVGKIS 268
W NG + + + P I G L + D+G +
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQ 96
Query: 269 TKTTVIVEGPPGLPGG 284
+ ++ G G
Sbjct: 97 DSAALTIQESSGPSSG 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 100.0 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 100.0 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 100.0 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 100.0 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.98 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.98 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.98 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 99.98 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 99.98 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.98 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 99.97 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.97 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.97 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 99.97 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.97 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 99.97 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.97 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 99.97 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.97 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 99.97 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 99.97 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.97 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.97 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 99.97 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.97 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.96 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.96 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.96 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 99.96 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.96 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.96 | |
| 1cfb_A | 205 | Drosophila neuroglian; neural adhesion molecule; H | 99.96 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.96 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.96 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.96 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.96 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.95 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.95 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 99.95 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.94 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.94 | |
| 2ibg_A | 214 | CG9211-PA, GH03927P; IHOG, fibronectin type III, p | 99.94 | |
| 3p4l_A | 211 | Neogenin; iron homeostasis, hemojuvelin receptor, | 99.94 | |
| 2vkw_A | 209 | Neural cell adhesion molecule 1,140 kDa isoform; a | 99.94 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 99.93 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.93 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.93 | |
| 3l5h_A | 589 | Interleukin-6 receptor subunit beta; IG-like, FNII | 99.93 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.92 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.92 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.92 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.92 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.92 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.92 | |
| 3lpw_A | 197 | A77-A78 domain from titin; intracellular FNIII-tan | 99.92 | |
| 3l5i_A | 290 | Interleukin-6 receptor subunit beta; cytokine rece | 99.92 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.92 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.92 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.92 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.91 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.91 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.91 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.91 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.91 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.91 | |
| 3fl7_A | 536 | Ephrin receptor; ATP-binding, kinase, nucleotide-b | 99.91 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.91 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.91 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.9 | |
| 3f7q_A | 234 | Integrin beta-4, GP150; hemidesmosome, cell adhesi | 99.9 | |
| 1fnf_A | 368 | Fibronectin; RGD, extracellular matrix, cell adhes | 99.9 | |
| 3t1w_A | 375 | Four-domain fibronectin fragment; human fibronecti | 99.9 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.9 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.9 | |
| 1bqu_A | 215 | Protein (GP130); cytokine receptor, glycoprotein 1 | 99.9 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.9 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.9 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.9 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.9 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.89 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.89 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.89 | |
| 1zlg_A | 680 | Anosmin 1; insulin-like growth factor receptor Cys | 99.89 | |
| 1n26_A | 325 | IL-6 receptor alpha chain; transmembrane, glycopro | 99.89 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.89 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.89 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.89 | |
| 3n06_B | 210 | PRL-R, prolactin receptor; PH dependence, hematopo | 99.89 | |
| 1i1r_A | 303 | GP130, interleukin-6 receptor beta chain; cytokine | 99.89 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.89 | |
| 1tdq_A | 283 | Tenascin-R; extracellular matrix, lecticans, tenas | 99.89 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.89 | |
| 2d9q_B | 313 | Granulocyte colony-stimulating factor receptor; cy | 99.89 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.88 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.88 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.88 | |
| 3r8q_A | 290 | Fibronectin; heparin, FNIII, heparin binding, cell | 99.88 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.88 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.88 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.88 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.88 | |
| 2gee_A | 203 | Hypothetical protein; fibronectin, EIIIB, cancer, | 99.88 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.88 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.87 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.87 | |
| 1cd9_B | 215 | G-CSF-R, protein (G-CSF receptor); class1 cytokine | 99.87 | |
| 1qr4_A | 186 | Protein (tenascin); fibronectin type-III, heparin, | 99.87 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.87 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.87 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.87 | |
| 1zlg_A | 680 | Anosmin 1; insulin-like growth factor receptor Cys | 99.87 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.87 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.87 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.87 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.87 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.87 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.87 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.87 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.87 | |
| 2ha1_A | 201 | Fibronectin; beta sandwich, protein-protein comple | 99.87 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.87 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.87 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.86 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.86 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.86 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.86 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.86 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.86 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.86 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.86 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.86 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.86 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.86 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.86 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.86 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.86 | |
| 3t1w_A | 375 | Four-domain fibronectin fragment; human fibronecti | 99.85 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.85 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.85 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.85 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.85 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.85 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.85 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.85 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.85 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.85 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.85 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.85 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.85 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.85 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.85 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.84 | |
| 1fnf_A | 368 | Fibronectin; RGD, extracellular matrix, cell adhes | 99.84 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.84 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.84 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.84 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.84 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.84 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.84 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.84 | |
| 1tdq_A | 283 | Tenascin-R; extracellular matrix, lecticans, tenas | 99.84 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.84 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.83 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.83 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.83 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.83 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.83 | |
| 3r8q_A | 290 | Fibronectin; heparin, FNIII, heparin binding, cell | 99.83 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.83 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.83 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.82 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.82 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.82 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.82 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.82 | |
| 2dtg_E | 897 | Insulin receptor; IR ectodomain, X-RAY crystallogr | 99.82 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.82 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.82 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.82 | |
| 3e0g_A | 483 | Leukemia inhibitory factor receptor; IG domain, cy | 99.82 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.81 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.81 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.81 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.81 | |
| 4go6_B | 232 | HCF C-terminal chain 1; tandem fibronectin repeat, | 99.81 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.81 | |
| 3s98_A | 306 | Interferon alpha/beta receptor 1; human, type I in | 99.81 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.81 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.81 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.8 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.8 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.8 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.8 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.8 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.8 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.8 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.8 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.8 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.8 | |
| 2ed9_A | 124 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.79 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.79 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.79 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.79 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.79 | |
| 3bpo_C | 314 | Interleukin-13 receptor alpha-1 chain; IL4, IL13, | 99.79 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.79 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.79 | |
| 3d85_D | 306 | IL-12B, interleukin-12 subunit P40, cytotoxic lymp | 99.79 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.79 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.78 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.78 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.78 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.78 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.78 | |
| 3se4_A | 414 | Interferon alpha/beta receptor 1; type I interfero | 99.78 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.78 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.78 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.78 | |
| 2q7n_A | 488 | Leukemia inhibitory factor receptor; cytokine cell | 99.77 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.77 | |
| 3l5i_A | 290 | Interleukin-6 receptor subunit beta; cytokine rece | 99.77 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.77 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.77 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.77 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.77 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.76 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.76 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.76 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.76 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.76 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.76 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.76 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.76 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.76 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.76 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.75 | |
| 2dbj_A | 124 | Proto-oncogene tyrosine-protein kinase MER precurs | 99.75 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.75 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.75 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.75 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.75 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.75 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.75 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.75 | |
| 3d85_D | 306 | IL-12B, interleukin-12 subunit P40, cytotoxic lymp | 99.75 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.75 | |
| 3lqm_A | 201 | Interleukin-10 receptor subunit beta; IL-10R2, com | 99.75 | |
| 3n1f_C | 102 | Cell adhesion molecule-related/DOWN-regulated BY; | 99.74 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.74 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.74 | |
| 3s98_A | 306 | Interferon alpha/beta receptor 1; human, type I in | 99.74 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.74 | |
| 1wj3_A | 117 | KIAA1496 protein; beta sandwich, PANG, structural | 99.74 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.74 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.74 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.74 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.74 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.74 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.74 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.74 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.74 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.74 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.74 | |
| 2dtg_E | 897 | Insulin receptor; IR ectodomain, X-RAY crystallogr | 99.74 | |
| 1axi_B | 236 | HGHBP, growth hormone receptor; complex (hormone-r | 99.73 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.73 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.73 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.73 | |
| 3se4_A | 414 | Interferon alpha/beta receptor 1; type I interfero | 99.73 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.73 | |
| 1wfo_A | 130 | Sidekick 2; FN3, cell adhesion, structural genomic | 99.73 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.72 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.72 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.72 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.72 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.72 | |
| 3lb6_C | 380 | IL-13, interleukin-13 receptor subunit alpha-2; cy | 99.72 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.72 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.72 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.72 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.72 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.71 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.71 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.71 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.71 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.71 | |
| 2edx_A | 134 | Protein tyrosine phosphatase, receptor type, F; LA | 99.71 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.71 | |
| 2haz_A | 105 | N-CAM 1, neural cell adhesion molecule 1; fibronec | 99.71 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.7 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.7 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.7 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.7 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.7 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.7 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.7 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.7 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.7 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.7 | |
| 2ee2_A | 119 | Contactin-1; neural cell surface protein F3, glyco | 99.7 | |
| 1x4y_A | 114 | Biregional cell adhesion molecule-related/DOWN- re | 99.7 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.7 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.7 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.7 | |
| 1v5j_A | 108 | KIAA1355 protein, RSGI RUH-008; FN3 domain, human | 99.69 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.69 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.69 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.69 | |
| 3lb6_C | 380 | IL-13, interleukin-13 receptor subunit alpha-2; cy | 99.69 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.69 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.69 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.69 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.69 | |
| 1va9_A | 122 | DOWN syndrome cell adhesion molecule like- protein | 99.69 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.69 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.69 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.68 | |
| 2edy_A | 103 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.68 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.68 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.68 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.68 | |
| 1x5h_A | 132 | Neogenin; RGM binding, fibronectin type III domain | 99.68 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.68 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.67 | |
| 2ede_A | 114 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.67 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.67 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.67 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.67 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.67 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.67 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.67 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.67 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.66 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.66 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.66 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.66 | |
| 1eer_B | 227 | Epobp, erythropoietin receptor; signal transductio | 99.66 | |
| 2dlh_A | 121 | Receptor-type tyrosine-protein phosphatase delta; | 99.66 | |
| 1uen_A | 125 | KIAA0343 protein; immunoglobulin-like beta-sandwic | 99.66 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.66 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.65 | |
| 4doh_R | 221 | Interleukin-20 receptor subunit alpha; IL10 family | 99.65 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.65 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.65 | |
| 1x5f_A | 120 | Neogenin; RGM binding, fibronectin type III domain | 99.65 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.65 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.65 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.65 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.65 | |
| 1x4z_A | 121 | Biregional cell adhesion molecule-related/DOWN- re | 99.65 | |
| 2djs_A | 108 | Ephrin type-B receptor 1; tyrosine-protein kinase | 99.65 | |
| 2edd_A | 123 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.65 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.64 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.64 | |
| 1x5i_A | 126 | Neogenin; RGM binding, fibronectin type III domain | 99.64 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.64 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.64 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.64 | |
| 1x5g_A | 116 | Neogenin; RGM binding, fibronectin type III domain | 99.64 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.64 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.64 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.64 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.64 | |
| 2crm_A | 120 | Fibronectin type-III domain containing protein 3A; | 99.64 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.63 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.63 | |
| 1bpv_A | 112 | Titin, A71, connectin; fibronectin type III; NMR { | 99.63 | |
| 2e7h_A | 109 | Ephrin type-B receptor 4; FN3 domain, tyrosine- pr | 99.63 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.63 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.63 | |
| 1wis_A | 124 | KIAA1514 protein; FNIII domain, sidekick-2, struct | 99.63 | |
| 1x3d_A | 118 | Fibronectin type-III domain containing protein 3A; | 99.63 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.63 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.63 | |
| 1x5l_A | 111 | Ephrin type-A receptor 8; FN3 domain, structural g | 99.63 | |
| 1wfn_A | 119 | Sidekick 2; FN3, cell adhesion, structural genomic | 99.63 | |
| 2crz_A | 110 | Fibronectin type-III domain containing protein 3A; | 99.62 | |
| 1x4x_A | 106 | Fibronectin type-III domain containing protein 3A; | 99.62 | |
| 2ed7_A | 119 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.62 | |
| 2e3v_A | 122 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.62 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.62 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.62 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.62 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.62 | |
| 4doh_B | 206 | Interleukin-20 receptor subunit beta; IL10 family | 99.62 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.62 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.62 | |
| 2ed8_A | 106 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.62 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.62 | |
| 3v6o_A | 206 | Leptin receptor; receptor-antibody complex, cytoki | 99.62 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.62 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.61 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.61 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.61 | |
| 2kbg_A | 114 | N-CAM 2, neural cell adhesion molecule 2; fibronec | 99.61 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.61 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.61 | |
| 2dm4_A | 108 | Sortilin-related receptor; beta-sandwich, sorting | 99.61 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.61 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.61 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.6 | |
| 1x5z_A | 115 | Receptor-type tyrosine-protein phosphatase delta; | 99.6 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.6 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.6 | |
| 2ic2_A | 115 | CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t | 99.6 | |
| 2db8_A | 110 | Tripartite motif protein 9, isoform 2; ring finger | 99.6 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.6 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.6 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.6 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.6 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.59 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.59 | |
| 1wfu_A | 120 | Unnamed protein product; FN3 domain, similar to 17 | 99.59 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.59 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.59 | |
| 1x5j_A | 113 | Neogenin; RGM binding, fibronectin type III domain | 99.58 | |
| 2yux_A | 120 | Myosin-binding protein C, SLOW-type; fibronectin I | 99.57 | |
| 2yuw_A | 110 | Myosin binding protein C, SLOW type; fibronectin I | 99.57 | |
| 1uey_A | 127 | KIAA0343 protein; immunoglobulin-like beta-sandwic | 99.57 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.57 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.57 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.57 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.57 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.57 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.57 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.57 | |
| 1x5y_A | 111 | Myosin binding protein C, fast-type; fast MYBP-C, | 99.56 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.56 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.56 | |
| 2dn7_A | 107 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.56 | |
| 2yrz_A | 118 | Integrin beta-4; GP150, CD104 antigen, structural | 99.56 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.56 | |
| 3g9v_A | 211 | Interleukin 22 receptor, alpha 2; cytokine, cytoki | 99.56 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.56 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.56 | |
| 1x5x_A | 109 | Fibronectin type-III domain containing protein 3A; | 99.56 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.55 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.55 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.55 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.55 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.54 | |
| 1x5a_A | 107 | Ephrin type-A receptor 1; tyrosine-protein kinase | 99.54 | |
| 2edb_A | 116 | Netrin receptor DCC; tumor suppressor protein DCC, | 99.54 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.54 | |
| 1uey_A | 127 | KIAA0343 protein; immunoglobulin-like beta-sandwic | 99.54 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.54 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.54 | |
| 3f7q_A | 234 | Integrin beta-4, GP150; hemidesmosome, cell adhesi | 99.53 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.53 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.53 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.53 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.53 | |
| 2ee3_A | 108 | Collagen alpha-1(XX) chain; KIAA1510, structural g | 99.53 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.52 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.52 | |
| 1uem_A | 117 | KIAA1568 protein; immunoglobulin-like beta-sandwic | 99.52 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.52 | |
| 3t04_D | 103 | Monobody 7C12; engineered binding protein, antibod | 99.52 | |
| 3bpo_C | 314 | Interleukin-13 receptor alpha-1 chain; IL4, IL13, | 99.52 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.51 | |
| 3b83_A | 100 | Ten-D3; beta sheet, computational redesigned prote | 99.51 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.51 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.51 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.5 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.5 | |
| 2rb8_A | 104 | Tenascin; beta sheet,loop design, alternative spli | 99.5 | |
| 1wf5_A | 121 | Sidekick 2 protein; FNIII domain, structural genom | 99.49 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.49 | |
| 2dju_A | 106 | Receptor-type tyrosine-protein phosphatase F; LAR | 99.49 | |
| 2gys_A | 419 | Cytokine receptor common beta chain; dimer of inte | 99.49 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.49 |
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=349.27 Aligned_cols=365 Identities=23% Similarity=0.356 Sum_probs=287.7
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEecC-----CCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIGS-----GGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~~~-----~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
+..+.+|+++.|.|.+.|.|.+.+.|+++ |..+.. +.++.+.. .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 9 ~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 88 (389)
T 2jll_A 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88 (389)
T ss_dssp CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCC
Confidence 35678899999999999999999999999 888764 34555543 346999999999999999999999999
Q ss_pred eeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee--ecCCeEEE
Q psy14886 168 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEI 245 (505)
Q Consensus 168 ~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i 245 (505)
....+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....... .... .....|.|
T Consensus 89 ~~~~~~l~V~~~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~i~W~~~g~~l~~~~~~~---~~~~~~~~~~~L~i 162 (389)
T 2jll_A 89 HQKSMYLDIEYAPKFIS-NQTIYYSWEGNPINISCDVKSNPPA--SIHWRRDKLVLPAKNTTN---LKTYSTGRKMILEI 162 (389)
T ss_dssp EEEEEEEEEEEEEEECC-SCCEEEECTTCCEEEEECEEEESCC--EEEEEETTEESSCTTCTT---EEEEECSSCEEEEE
T ss_pred cceEEEEEEEeCCEEec-CcceEEeccCCEEEEEEEEEecCCC--eEEEEECCccCCcccCce---EEEeccCCEEEEEE
Confidence 88889999987776643 2334467889999999999998764 667999998886532111 1111 12357999
Q ss_pred ecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCe
Q psy14886 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTW 324 (505)
Q Consensus 246 ~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w 324 (505)
..+...|.|.|+|.|.|..|.....+.+.+..+|.+|..+.+......++.|+|.++. .++.++..|.++++..+...|
T Consensus 163 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~ 242 (389)
T 2jll_A 163 APTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242 (389)
T ss_dssp CCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCC
T ss_pred CCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCccc
Confidence 9999999999999999999999889999999999999888888889999999999876 445688899999999888888
Q ss_pred EEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEE
Q psy14886 325 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS 404 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~ 404 (505)
....... ....+.+.+ |.+++.|.|+|.|.|..|.+.++... .+.+.+..|+.+|. +.......+++.
T Consensus 243 ~~~~~~~---------~~~~~~i~~-l~~~~~y~~~v~A~N~~G~~~~s~~~-~~~t~~~~~p~~p~-~~~~~~~~~~v~ 310 (389)
T 2jll_A 243 KIVRSHG---------VQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKIE-IFQTLPVREPSPPS-IHGQPSSGKSFK 310 (389)
T ss_dssp EEEECST---------TCSEEEECS-CCTTCEEEEEEEEEESSCBCCCCCCE-EEECCCCCCCCCCC-EEEEEETTTEEE
T ss_pred EEeeccC---------CcceEEECC-ccCCCEEEEEEEEEcCCccCCCCcce-EEEecCCCCCCCCc-cccccCcCCEEE
Confidence 7543321 123445555 99999999999999999999888764 56777777778885 555557889999
Q ss_pred EEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 405 l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
|.|++ +.+.+++|++|.|+|+..+...|...... .. ....+.|.+|.|++.|.|+|+|+|.+|.|++|++ .+.|
T Consensus 311 l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~--~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~-~~~T 384 (389)
T 2jll_A 311 LSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKV-QG--NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY-EFSM 384 (389)
T ss_dssp EEECC--CCCCSSCCCEEEEEEEC-----CCBCCEE-CT--TCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE-EEEC
T ss_pred EEEEC--CCCCCCcccEEEEEEEeCCCCcceeEeec-cC--CcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee-EecC
Confidence 99998 56788999999999999776667632211 12 2356889999999999999999999999999977 5555
Q ss_pred cc
Q psy14886 485 DP 486 (505)
Q Consensus 485 ~p 486 (505)
.|
T Consensus 385 ~~ 386 (389)
T 2jll_A 385 PP 386 (389)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=302.50 Aligned_cols=353 Identities=21% Similarity=0.281 Sum_probs=254.3
Q ss_pred CCCCceEEEEEEeccCCCeEEEEEC--CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRN--GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|++++|.|.+.|.|.+.|+|+|+ +..+..... ...+++.+. .++|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 13 ~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~ 89 (389)
T 2jll_A 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK--SLDGRIEVKGQHGSSSLHIKDVK-LSDSGRYDCEAASRIGGH 89 (389)
T ss_dssp ETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--C--CSSSSEEEEECSSEEEEEEESCC-GGGCEEEEEEEECSSCEE
T ss_pred eCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcC--CCCCeEEEeccCCcceEEEcccC-hhhCEEEEEEEEeCCCCc
Confidence 4799999999999999999999999 888763211 123566553 3589999999 999999999999999988
Q ss_pred EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCC---CEEEcCCC
Q psy14886 76 YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG---NLLISPVS 150 (505)
Q Consensus 76 ~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~---~l~i~~v~ 150 (505)
...+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.... +..+..++ .|.|.++.
T Consensus 90 ~~~~~l~V~~-~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~ 166 (389)
T 2jll_A 90 QKSMYLDIEY-APKFISNQ--TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166 (389)
T ss_dssp EEEEEEEEEE-EEEECCSC--CEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCS
T ss_pred ceEEEEEEEe-CCEEecCc--ceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCC
Confidence 8889999985 66665433 33468899999999999999999999999999887543 44444333 59999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec----CCCCeEEEEEeCCEEecCC
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE----ELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~~~w~~~~~~~~~~ 226 (505)
..|.|.|+|.|.|..|.....+.+.+...|..... .......+..+.|.|..... +...+.+.|.+++.....
T Consensus 167 ~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~--~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~- 243 (389)
T 2jll_A 167 DNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG--VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWK- 243 (389)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEE--EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCE-
T ss_pred hhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcc--eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccE-
Confidence 99999999999999999888888877555442211 01122345678899975322 222346678776532110
Q ss_pred CCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc----CCCCCCCceEEEEEeCCeEEEEeecC
Q psy14886 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE----GPPGLPGGVQVVEVHKTSATIQWTDG 302 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~----~~p~~p~~~~~~~~~~~~v~l~w~~~ 302 (505)
..........+.|..+...+.|.|+|.|.|..|....+..+.+. .+|.+|. +.......+++.|+|.++
T Consensus 244 ------~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~~~~~~v~l~W~~p 316 (389)
T 2jll_A 244 ------IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSFKLSITKQ 316 (389)
T ss_dssp ------EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC-EEEEEETTTEEEEEECCC
T ss_pred ------EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc-cccccCcCCEEEEEEECC
Confidence 00011123679999999999999999999999875433322222 2566664 666667899999999999
Q ss_pred CCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccC
Q psy14886 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381 (505)
Q Consensus 303 ~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t 381 (505)
.++++++.+|.|+|+..+...|..... .......+.+.+|.+++.|.|+|+|.|..|.|.+|.. .+.|
T Consensus 317 ~~~~~~i~~Y~v~~~~~~~~~~~~~~~---------~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~--~~~T 384 (389)
T 2jll_A 317 DDGGAPILEYIVKYRSKDKEDQWLEKK---------VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY--EFSM 384 (389)
T ss_dssp CCCSSCCCEEEEEEEC-----CCBCCE---------ECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE--EEEC
T ss_pred CCCCCcccEEEEEEEeCCCCcceeEee---------ccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee--EecC
Confidence 888899999999999876666653211 1123333444459999999999999999999988765 3444
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=324.19 Aligned_cols=442 Identities=16% Similarity=0.153 Sum_probs=301.7
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee-EEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQL 81 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l 81 (505)
.++.+.|.|.+.|.|.+.+.|.|+|..+.. .. ...+.|..+......+.|.|.+.+..|..... +.+
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~-------~~-----~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~ 157 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRT-------WN-----RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKV 157 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSS-------CE-----EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEE
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCc-------ee-----EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEe
Confidence 356899999999999999999999987652 11 13455555420334578888777766654332 222
Q ss_pred EEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEE-EE--ECCEEecCCCcEEEe---eCCCEEEcCCCCCC
Q psy14886 82 RVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WK--KDGNIIGSGGRRKIF---ENGNLLISPVSRDD 153 (505)
Q Consensus 82 ~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~-W~--~~g~~~~~~~~~~~~---~~~~l~i~~v~~~d 153 (505)
.+.. .+|.+. .+ .+..+.+|+++.|.|.+.|.|.+.+. |+ ++|..+.......+. ..++|.|.++...|
T Consensus 158 ~~~~~~~~p~~~-~~--~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d 234 (731)
T 2v5y_A 158 LGHPCTRTPHFL-RI--QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRD 234 (731)
T ss_dssp ESSCCSSSCEEC-CC--CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTT
T ss_pred eecccccccccc-cc--cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEccccccc
Confidence 2211 345554 22 45789999999999999999999887 87 677766432211111 12479999999999
Q ss_pred CEEEEEEEEcCCCc-eeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec----CCCCeEEEEEeCCEEecCCCC
Q psy14886 154 SGIYSCTATNVHGM-DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE----ELLDVAYIWTHNGVRIGNMDL 228 (505)
Q Consensus 154 ~G~y~C~~~~~~g~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~~~w~~~~~~~~~~~~ 228 (505)
.|.|+|.|.|..|. ....+.|.|..+|.... +..........+.|.|..... +...+.+.|...+. .+
T Consensus 235 ~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~--~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~-----~~ 307 (731)
T 2v5y_A 235 AGKYRCMIRTEGGVGISNYAELVVKEPPVPIA--PPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASG-----SW 307 (731)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEEECCCCBSS--CCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSS-----SC
T ss_pred CeEEEEEEECCCCCcceeeEEEEEecCCCCCC--CcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCC-----Cc
Confidence 99999999999997 56668888877665432 222333445678888876432 22234556655321 11
Q ss_pred CcccCCeeeecCCeEEEecCCCCCCEEEEEEEE--ecCCcEEEEEEEEE----cCCCCCCCceEEEEEeCCeEEEEeecC
Q psy14886 229 NELETPNINIDGGLLEITNASFADAGEYECVVK--STVGKISTKTTVIV----EGPPGLPGGVQVVEVHKTSATIQWTDG 302 (505)
Q Consensus 229 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~--n~~g~~~~~~~l~v----~~~p~~p~~~~~~~~~~~~v~l~w~~~ 302 (505)
. .........+.|..+.....+.|+|.|. |..|....+..+.+ ..+|.+|.++.+.....+++.|+|+++
T Consensus 308 ~----~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p 383 (731)
T 2v5y_A 308 N----DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPF 383 (731)
T ss_dssp E----EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECC
T ss_pred e----EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECC
Confidence 0 1112234688999999999999999999 99887543322222 345678888999999999999999998
Q ss_pred CCC--CCCCceEEEEEEeCCCCCeEEeee-ccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCc
Q psy14886 303 ATN--GRPITHYKIIARTNWNSTWFNVSE-HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQY 379 (505)
Q Consensus 303 ~~~--~~~i~~y~v~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~ 379 (505)
... ...+.+|.|+|+......|..... ... .......+.+.+ |.|++.|.|+|.|.|..|.+. |... .+
T Consensus 384 ~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~-L~p~t~Y~~~V~A~n~~G~s~-S~~~-~~ 455 (731)
T 2v5y_A 384 GYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWD-----TENSHPQHTITN-LSPYTNVSVKLILMNPEGRKE-SQEL-IV 455 (731)
T ss_dssp CHHHHCSSSCEEEEEEEEESSSSEEEEEEEECC-----SSCSSCEEEECS-CCSSCEEEEEEEEECSSCEEE-CCCE-EE
T ss_pred CcccccceeeeEEEEEEEccCCCCccceeEEEE-----ecCCcceEEECC-CCCCCEEEEEEEEEcCCCCCC-CceE-EE
Confidence 632 456789999998876544432211 000 001223444554 999999999999999999985 5443 67
Q ss_pred cCCCCCCCCCC-ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-------cEEEEeeecCceeeEEEE
Q psy14886 380 NTPADKPYQAP-SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-------FQSETLKEYGNVGIAVVR 451 (505)
Q Consensus 380 ~t~~~~p~~~P-~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 451 (505)
.|.+..|..+| .++.... ..++|.|.|++ +...+|.|++|+|+|+..+... +.... .... ..+.+.
T Consensus 456 ~T~~~~P~~p~~~~~~~~~-~~~si~l~W~~--P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~ 529 (731)
T 2v5y_A 456 QTDEDLPGAVPTESIQGST-FEEKIFLQWRE--PTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRV-SKLG--NETHFL 529 (731)
T ss_dssp ECCCCCCCCCCTTTCEEEE-ETTEEEEECCC--CSCCSSCCCEEEEEEEEEEECC---CCCCCEEEE-EEET--TCCEEE
T ss_pred EccCCCCCCCCcceEEeee-cCCeEEEEEcC--CCCCCCCccceEEEEEECcCCCccccccCcceEE-eecC--CcceEE
Confidence 78787777665 3555543 46799999998 4567889999999999876221 11111 1111 345789
Q ss_pred cCCccceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 452 IPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 452 l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|.+|.|++.|.|+|.|+|.+|.|++|. +.+.|.
T Consensus 530 i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T~ 562 (731)
T 2v5y_A 530 FFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTK 562 (731)
T ss_dssp ECSCCTTEEEEEEEEEEETTEEEEEEE-EEEECC
T ss_pred ecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEcC
Confidence 999999999999999999999999995 556554
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=298.55 Aligned_cols=430 Identities=20% Similarity=0.315 Sum_probs=289.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.++|.|.+.|.|.+.|+|+|++..+.. ..++.+. ..+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 17 v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~-------~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~g~~~ 88 (570)
T 3b43_A 17 AAIGEPITLQCKVDGTPEIRIAWYKEHTKLRS-------APAYKMQFKNNVASLVINKVD-HSDVGEYTCKAENSVGAVA 88 (570)
T ss_dssp ECTTSCEEEEEEEESSSSCEEEEECSSSBCCC-------CSSEEEECCTTEEEEEESSCC-GGGCEEEEEEEEETTEEEE
T ss_pred EcCCCEEEEEEEEccCCCCEEEEEECCEEccC-------CCCEEEEEECCEEEEEEccCC-hhhCEEEEEEEEeCCceEE
Confidence 46899999999999999999999999998863 3444432 2579999999 9999999999999998887
Q ss_pred eeEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe---eCCCEEEcCCCC
Q psy14886 77 SSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSR 151 (505)
Q Consensus 77 ~~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~---~~~~l~i~~v~~ 151 (505)
..+.+.|.. .+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.... ...+|.|.++..
T Consensus 89 ~~~~l~v~~~~~~p~~~~~~--~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~ 166 (570)
T 3b43_A 89 SSAVLVIKERKLPPSFARKL--KDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQ 166 (570)
T ss_dssp EEEEEEECCCCCCCEESSCC--CCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCG
T ss_pred EEEEEEECCCCCCCcccccC--CCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCCh
Confidence 777777754 345555443 4466789999999999999999999999999998765554332 234699999999
Q ss_pred CCCEEEEEEEEcCCCceeeeEEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~ 229 (505)
+|+|.|+|.|.|..|.....+.+.|.. .|+.....+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.....
T Consensus 167 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p--~i~W~k~g~~i~~~~~- 243 (570)
T 3b43_A 167 SHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI--KITWAKDNREIRPGGN- 243 (570)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCC--EEEEEETTEECCTTSS-
T ss_pred HHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCC--EEEEEECCEECcCCCc-
Confidence 999999999999999888777777754 34444444556677899999999999988765 6679999998865321
Q ss_pred cccCCeee--ecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc--eEEEEEeCCeEEEEeecCCCC
Q psy14886 230 ELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATN 305 (505)
Q Consensus 230 ~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~--~~~~~~~~~~v~l~w~~~~~~ 305 (505)
.... .....|.|..+..+|.|.|+|.|.|..|..+..+.|.|..+|..... .......+..+.|.|...
T Consensus 244 ----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~--- 316 (570)
T 3b43_A 244 ----YKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG--- 316 (570)
T ss_dssp ----EEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEE---
T ss_pred ----EEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEe---
Confidence 1111 12357999999999999999999999999988999988876642111 111234567788888742
Q ss_pred CCCCceEEEEEEeCCCCCeEEeeeccccc---eeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 306 GRPITHYKIIARTNWNSTWFNVSEHVIGK---EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 306 ~~~i~~y~v~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
+.|...+.|. .....+... ..........+.+.+ +...+.+.|+|.|.|..|....+... .+...
T Consensus 317 g~P~p~v~W~----------k~~~~l~~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~a~N~~g~~~~~~~l-~V~~~ 384 (570)
T 3b43_A 317 GSPEIKVLWY----------KDETEIQESSKFRMSFVESVAVLEMYN-LSVEDSGDYTCEAHNAAGSASSSTSL-KVKEP 384 (570)
T ss_dssp SSSSCEEEEE----------ETTEECCCSSSEEEEEETTEEEEEEES-CCGGGCEEEEEEEEBTTBCCEEEEEE-CEECC
T ss_pred eCCCCEEEEe----------ECCEECCCCCcEEEEEECCEEEEEECC-CCcccCEEEEEEEEeCCCEEEEEEEE-EecCC
Confidence 2333333332 211111100 000111223344445 99999999999999999976433221 22211
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-----CCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-----DTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
+.. ...|..+.+. ....+.|.+.. . +..+ -.|.|...+ +..+. .... .....+.|.++.+
T Consensus 385 P~~-~~~~~~~~~~--~G~~v~l~C~~--~--g~P~---p~v~W~k~g~~l~~~~~~~--~~~~---~~~~~L~i~~v~~ 449 (570)
T 3b43_A 385 PVF-RKKPHPVETL--KGADVHLECEL--Q--GTPP---FQVSWHKDKRELRSGKKYK--IMSE---NFLTSIHILNVDS 449 (570)
T ss_dssp CEE-CSCCCCEEEC--TTCCEEEEEEE--E--SSSS---CCCEEEETTEECCSSSSEE--EEEE---TTEEEEEECSCCG
T ss_pred Cee-ecCCCceeec--CCCEEEEEEEE--e--cCCC---CEEEEEECCEECcCCCCEE--EEEc---CCEEEEEECCCCh
Confidence 111 1233444433 24556777654 1 1111 134555554 11111 1111 1123556777776
Q ss_pred eeeEEEEEEEecCCCCCCCC
Q psy14886 458 YTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s 477 (505)
.-.-.++..|.|.+|....+
T Consensus 450 ~D~G~Y~C~A~N~~G~~~~~ 469 (570)
T 3b43_A 450 ADIGEYQCKASNDVGSDTCV 469 (570)
T ss_dssp GGCEEEEEEEECSSCEEEEE
T ss_pred hhCEEEEEEEEECCCeEEEE
Confidence 66677788999999975543
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=299.84 Aligned_cols=341 Identities=22% Similarity=0.359 Sum_probs=251.3
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.+|+.++|.|.+.|.|.+.|+|+|||..+.. ..++.. ...+|.|.+++ .+|+|.|+|.|.|..|....
T Consensus 114 ~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~-------~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 185 (570)
T 3b43_A 114 TLGFPVAFECRINGSEPLQVSWYKDGELLKD-------DANLQTSFIHNVATLQILQTD-QSHVGQYNCSASNPLGTASS 185 (570)
T ss_dssp ETTSCEEEEEEEESSSSCEEEEEETTEECCC-------CSSEEEEEETTEEEEEESSCC-GGGCEEEEEEEEETTEEEEE
T ss_pred cCCCeEEEEEEEccCCCCEEEEEECCEECcC-------CCCEEEEEECCEEEEEECcCC-hHHCEEEEEEEEeCCcEEEE
Confidence 3699999999999999999999999999873 223221 23689999999 99999999999999888877
Q ss_pred eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee---CCCEEEcCCCCC
Q psy14886 78 SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRD 152 (505)
Q Consensus 78 ~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~v~~~ 152 (505)
.+.+.|.. .+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+.. ...|.|.++..+
T Consensus 186 ~~~l~v~~~~~pp~~~~~p--~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~ 263 (570)
T 3b43_A 186 SAKLTLSEHEVPPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG 263 (570)
T ss_dssp EEEEEEECCCCCCEEEECC--CCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGG
T ss_pred EEEEEEcCCCCCCccccCC--ceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcc
Confidence 77777764 345555444 33457899999999999999999999999999987766554432 246999999999
Q ss_pred CCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCccc
Q psy14886 153 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 232 (505)
|+|.|+|.|.|..|.....+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+ .+.|++++..+.......
T Consensus 264 D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p--~v~W~k~~~~l~~~~~~~-- 339 (570)
T 3b43_A 264 DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKDETEIQESSKFR-- 339 (570)
T ss_dssp GCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSC--EEEEEETTEECCCSSSEE--
T ss_pred cCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCC--EEEEeECCEECCCCCcEE--
Confidence 9999999999999998888999998888776655555567899999999999988765 667999999886532100
Q ss_pred CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCce-EEEEEeCCeEEEEeecCCCCCCCCce
Q psy14886 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSATIQWTDGATNGRPITH 311 (505)
Q Consensus 233 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~-~~~~~~~~~v~l~w~~~~~~~~~i~~ 311 (505)
.........|.|.++..+|.|.|+|.|.|..|.......|.|..+|.....+ .+....+..+.|.|... +.|...
T Consensus 340 -~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~---g~P~p~ 415 (570)
T 3b43_A 340 -MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ---GTPPFQ 415 (570)
T ss_dssp -EEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEE---SSSSCC
T ss_pred -EEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEe---cCCCCE
Confidence 0111123579999999999999999999999999999999998877422111 12334567788888742 222222
Q ss_pred EEEEEEeCCCCCeEEeeeccccce---eeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 312 YKIIARTNWNSTWFNVSEHVIGKE---VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 312 y~v~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
+.| ......+.... ...........+.+ +...+.+.|+|.|.|..|...
T Consensus 416 v~W----------~k~g~~l~~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~ 467 (570)
T 3b43_A 416 VSW----------HKDKRELRSGKKYKIMSENFLTSIHILN-VDSADIGEYQCKASNDVGSDT 467 (570)
T ss_dssp CEE----------EETTEECCSSSSEEEEEETTEEEEEECS-CCGGGCEEEEEEEECSSCEEE
T ss_pred EEE----------EECCEECcCCCCEEEEEcCCEEEEEECC-CChhhCEEEEEEEEECCCeEE
Confidence 332 22211111000 00000112344444 899999999999999999764
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=291.55 Aligned_cols=356 Identities=18% Similarity=0.247 Sum_probs=267.8
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCC-CCCCCEEEEEEEEcCCCceeee-EEEEEE---e
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPV-SRDDSGIYSCTATNVHGMDESK-GRLIVL---H 178 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v-~~~d~G~y~C~~~~~~g~~~~~-~~l~v~---~ 178 (505)
...+.|.|.+.|.|.+.+.|.++|..+..-. ...+.|..+ .....+.|.|.+.+..|..... +.+.+. .
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~------~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~ 164 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWN------RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTR 164 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSCE------EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSS
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCcee------EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccc
Confidence 4589999999999999999999997653211 123555554 2333478999887777765543 222221 2
Q ss_pred CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEE--eCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEE
Q psy14886 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256 (505)
Q Consensus 179 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 256 (505)
+|.+. .+....+..|+.+.|.|.+.+.|.|.+. .|. ++|..+........... ...+.|.|..+...|.|.|
T Consensus 165 ~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p~i~-~W~~~~~g~~l~~~~~~~~~~~---~~~~~l~I~~~~~~d~g~Y 238 (731)
T 2v5y_A 165 TPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDR-LWLQGIDVRDAPLKEIKVTSSR---RFIASFNVVNTTKRDAGKY 238 (731)
T ss_dssp SCEEC--CCCCEEEETTSCEEEEEEEESCCCTTCE-EEEEESSSCCEEEEEEEECCSS---EEEEEEEECSCCTTTCEEE
T ss_pred ccccc--cccceEEeCCCcEEEEEEeCCCCCCcee-EEEecCCCccccccceEEeccc---cceEEEEEcccccccCeEE
Confidence 34433 3457888999999999999999988765 255 67765543211000000 1135899999999999999
Q ss_pred EEEEEecCCc-EEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCeEEeeeccccc
Q psy14886 257 ECVVKSTVGK-ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334 (505)
Q Consensus 257 ~C~~~n~~g~-~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~ 334 (505)
+|.|.|..|. .+....|.|..+|.+|..+.+.....+.+.|+|.++. .++.++..|.|+|+.. ...|......
T Consensus 239 ~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~~---- 313 (731)
T 2v5y_A 239 RCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSWNDRQPV---- 313 (731)
T ss_dssp EEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES-SSSCEEEEEC----
T ss_pred EEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEEC-CCCceEEecc----
Confidence 9999999998 6677889999999998888888889999999999876 3458899999999886 4567654321
Q ss_pred eeeeecCceeeEEeeeccCCceeEEEEEEE--cCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCc
Q psy14886 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAG--NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPR 412 (505)
Q Consensus 335 ~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~--n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~ 412 (505)
....+.+.+ |.+++.|.|+|.|. |..|.+.+|... .+.+.+..|+.+|.++.+...+.++|.|.|+++..
T Consensus 314 ------~~~~~~i~~-L~p~t~Y~~~V~A~~~N~~G~s~~S~~~-~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~ 385 (731)
T 2v5y_A 314 ------DSTSYKIGH-LDPDTEYEISVLLTRPGEGGTGSPGPAL-RTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGY 385 (731)
T ss_dssp ------CSSEEEECS-CCTTCEEEEEEEEECSSTTCSCCBCCCE-EEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCH
T ss_pred ------CcceEEEeC-CCCCCEEEEEEEEEecCCCccccCCCcE-EeeecCCCCCCCCceeEEEeccCCeEEEEEECCCc
Confidence 223455555 99999999999999 999999888764 67888889999999999998899999999999655
Q ss_pred cccCCCCceEEEEEEEcCCCCcEEEEe-eecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 413 EKQNAPNIYYKIFWRKKNDTEFQSETL-KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 413 ~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
...++.+.+|.|+|+..+...+..... ..........+.|.+|.|++.|.|+|.|+|..|.|+ |+.+.+.|.
T Consensus 386 ~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~ 458 (731)
T 2v5y_A 386 NVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTD 458 (731)
T ss_dssp HHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECC
T ss_pred ccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEcc
Confidence 556788999999999877444432211 112223456789999999999999999999999995 888888774
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=280.05 Aligned_cols=414 Identities=19% Similarity=0.237 Sum_probs=280.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe--e
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS--S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~--~ 78 (505)
+.+|+.++|.|.+.+.|.+.++|+|+|..+.. +..|.|.+++ .+|+|.|+|.+.|..|.... .
T Consensus 215 ~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~--------------~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~s~~ 279 (642)
T 1e07_A 215 YRSGENLNLSCHAASNPPAQYSWFVNGTFQQS--------------TQELFIPNIT-VNNSGSYTCQAHNSDTGLNRTTV 279 (642)
T ss_pred cccCCEEEEEEEcCCCCCcEEEEEECCeEccc--------------CCceEEeccc-ccCCeEEEEEEEeCCCceEEeee
Confidence 46899999999999899999999999998752 4679999999 99999999999998876544 3
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eCCCEEEcCCCCCCCEEE
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~y 157 (505)
+.|.|...++...+.. .....+..|+.+.|.|.+.+.| +.+.|+++|..+....+..+. .++.|.|.++..+|+|.|
T Consensus 280 ~~v~v~~~~~~p~i~~-~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 357 (642)
T 1e07_A 280 TTITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY 357 (642)
T ss_pred EEEEEEccCCCCEEEc-CCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeE
Confidence 5566654332222222 2334466788899999999886 699999999988766666554 346799999999999999
Q ss_pred EEEEEcCCCcee-eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCee
Q psy14886 158 SCTATNVHGMDE-SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236 (505)
Q Consensus 158 ~C~~~~~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 236 (505)
+|.|.|..|... ..+.|.|...|......+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+..
T Consensus 358 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~i~W~~~g~~~~~----------- 424 (642)
T 1e07_A 358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPA--QYSWLIDGNIQQH----------- 424 (642)
T ss_pred EEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCC--eEEEEECCEEcCC-----------
Confidence 999999988754 34788888777655445566778899999999999988765 5679999987643
Q ss_pred eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE--EEEEEcCCCCCCCc---eEEEEEeCCeEEEEeecCCCCCCCCce
Q psy14886 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTK--TTVIVEGPPGLPGG---VQVVEVHKTSATIQWTDGATNGRPITH 311 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~--~~l~v~~~p~~p~~---~~~~~~~~~~v~l~w~~~~~~~~~i~~ 311 (505)
...|.|..+..+|.|.|+|.|.|..|....+ +.+.+..++.+|.. .......+..+.|.|... + +...
T Consensus 425 ---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~---~-~~~~ 497 (642)
T 1e07_A 425 ---TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE---A-QNTT 497 (642)
T ss_pred ---CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC---C-CCcE
Confidence 2469999999999999999999999875544 55666554433321 122334678899999854 1 2233
Q ss_pred EEEEEEeCCCCCeEEeeeccccceeeee-cCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCC
Q psy14886 312 YKIIARTNWNSTWFNVSEHVIGKEVDRY-TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390 (505)
Q Consensus 312 y~v~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P 390 (505)
+.+... ...+........ .....+.+.+ +...+.+.|+|.|.|..|..........+...+..+...|
T Consensus 498 i~W~~~----------g~~l~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~ 566 (642)
T 1e07_A 498 YLWWVN----------GQSLPVSPRLQLSNGNRTLTLFN-VTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566 (642)
T ss_pred EEEEEC----------CEeCCCCCcEEEcCCCcEEEEee-cChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecC
Confidence 333321 111110000011 1223455555 9999999999999999986532212112222222222334
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND 470 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~ 470 (505)
....+. ....+.|.+.. .+..+. .+.|...+.. +.. ...+.|.++.+...-.+++.|.|.
T Consensus 567 ~~~~v~--~g~~~~l~C~~----~g~p~p---~v~W~~~g~~------i~~-----~~~L~i~~~~~~d~G~Y~C~a~N~ 626 (642)
T 1e07_A 567 PDSSYL--SGANLNLSCHS----ASNPSP---QYSWRINGIP------QQH-----TQVLFIAKITPNNNGTYACFVSNL 626 (642)
T ss_pred CceeEE--cCCcEEEEEEe----ccCCCC---eEEEEECCEE------Ccc-----CceEEECcccccCCeEEEEEEEec
Confidence 444443 24567777764 111112 5666665511 111 124566666667777888999999
Q ss_pred CCCCCCCceEEE
Q psy14886 471 VGPGPESEVVTI 482 (505)
Q Consensus 471 ~G~g~~s~~~~~ 482 (505)
+|....+..+.+
T Consensus 627 ~G~~~~s~~l~V 638 (642)
T 1e07_A 627 ATGRNNSIVKSI 638 (642)
T ss_pred ccCcceeEEEEE
Confidence 998766554443
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=273.38 Aligned_cols=412 Identities=18% Similarity=0.274 Sum_probs=273.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceE-e
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY-S 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~-~ 77 (505)
+++|+.++|.|.+.+ |.+.+.|+|+|..+.. ..++.+ .+++|.|.+++ .+|+|.|+|.+.|..+... .
T Consensus 123 v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~-------~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~~~~~s~ 193 (642)
T 1e07_A 123 VEDKDAVAFTCEPET-QDATYLWWVNNQSLPV-------SPRLQLSNGNRTLTLFNVT-RNDTASYKCETQNPVSARRSD 193 (642)
T ss_pred EecCCcEEEEEECCC-CCeeEEEEECCeECCC-------CCceEEcCCCCEEEEeCCC-cccCeeEEEEEecCCCCcccc
Confidence 357999999999988 8899999999998873 344443 45799999999 9999999999999877643 3
Q ss_pred eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 78 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 78 ~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
.+.|.|...++.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|+++|..+.. ...|.|.++..+|+|.|
T Consensus 194 ~~~l~V~~~p~~~~~~~--~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~--------~~~L~i~~~~~~d~G~Y 263 (642)
T 1e07_A 194 SVILNVLYGPDAPTISP--LNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQS--------TQELFIPNITVNNSGSY 263 (642)
T ss_pred eEEEEEEeCCCCcEEec--CCcccccCCEEEEEEEcCCCCCcEEEEEECCeEccc--------CCceEEecccccCCeEE
Confidence 57788885444443333 345688999999999999999999999999987743 45699999999999999
Q ss_pred EEEEEcCCCceeee--EEEEEEeCCe-eeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCC
Q psy14886 158 SCTATNVHGMDESK--GRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234 (505)
Q Consensus 158 ~C~~~~~~g~~~~~--~~l~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 234 (505)
+|.|.|..|..... +.|.|...+. ..........+..|+.+.|.|.+.+.+ + .+.|+++|..+.... ..
T Consensus 264 ~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~--~v~W~~~g~~l~~~~-----~~ 335 (642)
T 1e07_A 264 TCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-T--TYLWWVNNQSLPVSP-----RL 335 (642)
T ss_pred EEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-c--cEEEEECCccCCCcC-----CE
Confidence 99999988866543 4566654322 222223334455677899999998864 3 677999988775422 12
Q ss_pred eeeecCCeEEEecCCCCCCEEEEEEEEecCCcE-EEEEEEEEcCCCCCCCc--eEEEEEeCCeEEEEeecCCCCCCCCce
Q psy14886 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITH 311 (505)
Q Consensus 235 ~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l~v~~~p~~p~~--~~~~~~~~~~v~l~w~~~~~~~~~i~~ 311 (505)
.....+..|.|..+..+|.|.|+|.|.|..|.. +..+.|.|..+|..+.. .......+..+.|.|... +.|...
T Consensus 336 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~---g~p~~~ 412 (642)
T 1e07_A 336 QLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA---SNPPAQ 412 (642)
T ss_pred EEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcC---ccCCCe
Confidence 223346789999999999999999999999874 45678888766654321 122334677888998742 223233
Q ss_pred EEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCc
Q psy14886 312 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391 (505)
Q Consensus 312 y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~ 391 (505)
+. |......+. ....+.+.+ +.+.+.+.|+|.|.|..|....+... .+... .++.+|.
T Consensus 413 i~----------W~~~g~~~~--------~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~s~~~-~v~v~--~~~~~p~ 470 (642)
T 1e07_A 413 YS----------WLIDGNIQQ--------HTQELFISN-ITEKNSGLYTCQANNSASGHSRTTVK-TITVS--AELPKPS 470 (642)
T ss_pred EE----------EEECCEEcC--------CCceEEEcc-CChhhCeEEEEEEEcCCCCCcccceE-EEEEe--ccCCCce
Confidence 33 333222221 223445555 99999999999999999876544321 11111 1111221
Q ss_pred ee---eeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC--cEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 392 RI---GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 392 ~~---~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
.. .........+.|.+... ++ .-.+.|...+..- -....... ....+.|.++.+.....+++.
T Consensus 471 i~~~~~~~v~~g~~v~l~C~~~------~~--~~~i~W~~~g~~l~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 538 (642)
T 1e07_A 471 ISSNNSKPVEDKDAVAFTCEPE------AQ--NTTYLWWVNGQSLPVSPRLQLSN----GNRTLTLFNVTRNDARAYVCG 538 (642)
T ss_pred EecCCceeecCCCeEEEEEECC------CC--CcEEEEEECCEeCCCCCcEEEcC----CCcEEEEeecChhcCceEEEE
Confidence 10 01112356788888762 11 2345565554110 00011111 113556666666666677888
Q ss_pred EecCCCCCCC
Q psy14886 467 AINDVGPGPE 476 (505)
Q Consensus 467 a~n~~G~g~~ 476 (505)
|.|..|....
T Consensus 539 a~n~~g~~~s 548 (642)
T 1e07_A 539 IQNSVSANRS 548 (642)
T ss_pred eEcCCCCccC
Confidence 9999997543
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=268.49 Aligned_cols=338 Identities=23% Similarity=0.359 Sum_probs=233.5
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcC-CCCCCCeEEEEEEEcccCceEe-eE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL-NPERDPAMYQCRAKNQLKTRYS-SA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~d~G~Y~C~~~~~~~~~~~-~~ 79 (505)
.+|+.+.|.|.+.|.|.+.|+|+|||.++... ...++...+++|.|.++ + .+|+|.|+|.|.|..|...+ .+
T Consensus 21 ~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~-----~~~~~~~~~g~l~i~~~~~-~~D~G~Y~C~A~N~~G~~~s~~~ 94 (384)
T 3kld_A 21 SEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-----MDFRYSVVDGSLLINNPNK-TQDAGTYQCIATNSFGTIVSREA 94 (384)
T ss_dssp CSCSEEEECCEEEEESCCEEEEEETTEECCC---------CEEEETTEEEEESCCH-HHHCEEEEEEEEETTEEEECCCE
T ss_pred CCCCeEEEEeEecCCCCCEEEEEECCEECcCC-----CCccEEEECCEEEEcCCCC-cccCEEEEEEEEcCcccEEecce
Confidence 47999999999999999999999999998742 23466777889999887 6 88999999999999887544 56
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEE-eeCCCEEEcCCCCCCCEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~y 157 (505)
.+.+... +.+...+ .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....+... ..++.|.|.++..+|+|.|
T Consensus 95 ~l~v~~~-~~~~~~~-~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 172 (384)
T 3kld_A 95 KLQFAYL-ENFKTRT-RSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNY 172 (384)
T ss_dssp EEEEEEE-CCCSCCC-CCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEE
T ss_pred EEEEecc-cccccCC-CCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceE
Confidence 6666643 3333332 2446788999999999764 346679999999988765554443 3456899999999999999
Q ss_pred EEEEEcCCCceeee---EEEEEE-------eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC-CEEecCC
Q psy14886 158 SCTATNVHGMDESK---GRLIVL-------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNM 226 (505)
Q Consensus 158 ~C~~~~~~g~~~~~---~~l~v~-------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~-~~~~~~~ 226 (505)
+|.|.|..+..... ..+.+. ..|.+....+....+..|+.+.|.|.+.+.|.| .+.|+++ +..+...
T Consensus 173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p--~i~W~k~~~~~~~~~ 250 (384)
T 3kld_A 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP--TILWRRADGKPIARK 250 (384)
T ss_dssp EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCC--EEEEEETTCCCCCTT
T ss_pred EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCC--cEEEEeCCCcccccc
Confidence 99999988754321 223222 133343444556678899999999999999876 4569884 4333221
Q ss_pred CCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCce-EEEEEeCCeEEEEeecCCCC
Q psy14886 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSATIQWTDGATN 305 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~-~~~~~~~~~v~l~w~~~~~~ 305 (505)
......+..|.|.++..+|.|.|+|.|.|..|.......|.|..+|.....+ ......+..+.|.|..
T Consensus 251 -------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~---- 319 (384)
T 3kld_A 251 -------ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKA---- 319 (384)
T ss_dssp -------CEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEE----
T ss_pred -------ceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeEC----
Confidence 2223345689999999999999999999999998888888887655321111 1223345566677653
Q ss_pred CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 306 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 306 ~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
...+.....|......+........ ....+.+.. +...+.+.|+|.|.|.+|...
T Consensus 320 ---------~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~ 374 (384)
T 3kld_A 320 ---------NGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITI-VNLSDAGMYQCVAENKHGVIF 374 (384)
T ss_dssp ---------EEESCCEEEEEETTEECCCBTTEEE-ETTEEEESS-CCGGGCEEEEEEEEETTEEEE
T ss_pred ---------CccCCCeEEEEECCEECCCCccEEE-eCCEEEEee-cChhhCEEEEEEEEeCCceEE
Confidence 2222222233332222211111111 122445555 889999999999999999764
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.91 Aligned_cols=441 Identities=19% Similarity=0.220 Sum_probs=291.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|+.++|.|.+.|.|.+.+.|+|++....... ......++...+++|.|.+++ .+|+|.|+|.+.|..|.....+.
T Consensus 260 v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~~~~ 337 (816)
T 3dmk_A 260 YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQ-AVVLNDRVKQVSGTLIIKDAV-VEDSGKYLCVVNNSVGGESVETV 337 (816)
T ss_dssp ECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEE-ECCCSSSEEEETTEEEECSCC-GGGCEEEEEEEECSSCEEEEEEE
T ss_pred EeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCc-ceecCCceEeccceEEECCCC-HhHCEEEEEEEEcCCCceEEEEE
Confidence 3689999999999999999999999543221100 011334666678899999999 99999999999999888777788
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 160 (505)
|.|.. ++.+...+ ....+.+|+++.|.|.+.+.|.+.+.|+++|..+... ++.|.|.++..+|+|.|+|.
T Consensus 338 l~V~~-~~~~~~~~--~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------~~~L~i~~v~~~d~G~Y~C~ 407 (816)
T 3dmk_A 338 LTVTA-PLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCF 407 (816)
T ss_dssp EEECE-EEEEEEES--SEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEE
T ss_pred EEEcC-CCceeeCC--CceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------CCEEEEcCCCHHHCEEEEEE
Confidence 88875 44444433 4567899999999999999999999999999988643 35699999999999999999
Q ss_pred EEcCCCceeeeEEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeee
Q psy14886 161 ATNVHGMDESKGRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238 (505)
Q Consensus 161 ~~~~~g~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 238 (505)
+.|..|.....+.+.|.. .|+.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+......... .....
T Consensus 408 a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~v~W~~~g~~l~~~~~~~~~-~~~~~ 484 (816)
T 3dmk_A 408 VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP--EISWELDGKKIANNDRYQVG-QYVTV 484 (816)
T ss_dssp EECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCC--EEEEEETTEECCSCTTEEEE-EEECT
T ss_pred EECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCC--EEEEEECCEECCCCCCcccc-cEEec
Confidence 999999887777777742 34444444556678899999999999987765 66799999888653211000 00001
Q ss_pred c---CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEE
Q psy14886 239 D---GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII 315 (505)
Q Consensus 239 ~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~ 315 (505)
. ...|.|..+..+|.|.|+|.|.|..|.....+.|.|..+|............+..+.|.|... +.+...+.+.
T Consensus 485 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~---g~p~~~i~W~ 561 (816)
T 3dmk_A 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVA---GYPIDSIVWE 561 (816)
T ss_dssp TSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEE---CSSEEEEEEE
T ss_pred CCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEec---CCCCCEEEEE
Confidence 1 135999999999999999999999999999999999887743332333455778899999742 2333333322
Q ss_pred EEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc-CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceee
Q psy14886 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV-PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIG 394 (505)
Q Consensus 316 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~ 394 (505)
.....+.............+.+.+ +. ..+.+.|+|.|.|..|.+........+...+...+..+....
T Consensus 562 ----------k~~~~l~~~~~~~~~~~~~l~i~~-v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~ 630 (816)
T 3dmk_A 562 ----------RDNRALPINRKQKVFPNGTLIIEN-VERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGP 630 (816)
T ss_dssp ----------ETTEESCCSTTEEECTTSEEEESS-CCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSC
T ss_pred ----------ECCeEcccCCceEEecCCeEEEEe-cCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccc
Confidence 221111111111111233445554 65 578999999999998864321111111111211111112222
Q ss_pred eeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC-----CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEec
Q psy14886 395 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-----EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIN 469 (505)
Q Consensus 395 ~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n 469 (505)
+ .....+.|.+... ++.+ ...+.|...+.. .+.... . ......+.|.++.+.....++..|.|
T Consensus 631 ~--~~G~~v~L~C~~~----~~~~--~~~i~W~~~g~~l~~~~~~~~~~--~--~~~~~~L~i~~v~~~d~G~Y~C~a~N 698 (816)
T 3dmk_A 631 A--QVGQYLTLHCSVP----GGDL--PLNIDWTLDGQAISEDLGITTSR--V--GRRGSVLTIEAVEASHAGNFTCHARN 698 (816)
T ss_dssp E--ESSCEEEEEEBCC----CSSS--CCEEEEEETTBCCCGGGTCEEEE--E--TTTEEEEEEESCCGGGCEEEEEEEEC
T ss_pred c--CCCCeEEEEEEEe----CCCC--CCEEEEEECCeEcCCCCCeeEEE--c--CCCeeEEEEccCChhhCEEEEEEEEe
Confidence 2 2356788888651 1111 124566665511 111111 1 11234677888888888999999999
Q ss_pred CCCCCCCCceEEE
Q psy14886 470 DVGPGPESEVVTI 482 (505)
Q Consensus 470 ~~G~g~~s~~~~~ 482 (505)
.+|....+..+.+
T Consensus 699 ~~g~~~~~~~l~V 711 (816)
T 3dmk_A 699 LAGHQQFTTPLNV 711 (816)
T ss_dssp SSCEEEEEEEECE
T ss_pred CCccEEEEEEEEE
Confidence 9998755544433
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=252.94 Aligned_cols=258 Identities=22% Similarity=0.364 Sum_probs=209.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--E--CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--Q--DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~--~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.+.|.+.++|+|++..+.. ..++.+ . ..+|.|.+++ .+|+|.|+|.+.|..+...
T Consensus 17 ~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n~~g~~~ 88 (284)
T 2rik_A 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRP-------GGNYKMTLVENTATLTVLKVT-KGDAGQYTCYASNVAGKDS 88 (284)
T ss_dssp EETTCCEEEEEEEESSSCCEEEEEETTEECCS-------SSSEEEEEETTEEEEEESSCC-GGGCEEEEEEEEETTEEEE
T ss_pred ecCCCcEEEEEEEEcCCCCEEEEEECCEECcC-------CCcEEEEEcCCEEEEEEecCC-cccCEEEEEEEEECCceEE
Confidence 35899999999999988899999999999873 233333 2 3689999999 9999999999999888877
Q ss_pred eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee---CCCEEEcCCCCCC
Q psy14886 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDD 153 (505)
Q Consensus 77 ~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~v~~~d 153 (505)
..+.|.|.. +|.+.... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..... ...|.|.++..+|
T Consensus 89 ~~~~l~V~~-~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 166 (284)
T 2rik_A 89 CSAQLGVQE-PPRFIKKL-EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166 (284)
T ss_dssp EEEEEEEEC-CCEEEECC-CSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGG
T ss_pred EEEEEEccC-CCcccccC-CCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCccc
Confidence 788888885 56554433 344568899999999999999999999999999987665554432 2359999999999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
+|.|+|.+.|..|.....+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.....
T Consensus 167 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~~~~~~~~~~----- 238 (284)
T 2rik_A 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRK-KPHPVETLKGADVHLECELQGTPPF--QVSWHKDKRELRSGKK----- 238 (284)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCBCCS-CCCCEEECTTCCEEEEEECBSSSCC--EEEEEETTEEECBTTT-----
T ss_pred CEEEEEEEEcCCCceeEEEEEEEecCCccee-CCCcceecCCCeEEEEEEEEecCCC--EEEEEECCEECcCCCC-----
Confidence 9999999999999988889999987776543 3455678899999999999987764 6779999998865321
Q ss_pred Ceeeec--CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 234 PNINID--GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 234 ~~~~~~--~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
...... ...|.|..+..+|.|.|+|.|.|..|.....+.|.|+
T Consensus 239 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 111111 2478899999999999999999999999988888875
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=262.97 Aligned_cols=341 Identities=21% Similarity=0.315 Sum_probs=241.3
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcC-----CCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYL-----NPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~-----~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|+.++|.|.+.+ .|.+.+.|+|+|..+... ...++.. .+++|.|.++ + .+|+|.|+|.+.+..+
T Consensus 33 v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----~~~~~~~~~~~~l~i~~~~~~~~~-~~D~G~Y~C~~~~~~~ 106 (403)
T 3laf_A 33 TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG-----MDDRKQQLPNGSLLIQNILHSRHH-KPDEGLYQCEASLGDS 106 (403)
T ss_dssp ECTTCCEEECCEEECTTCCCEEEEEETTEECCTT-----SCTTEEECTTSCEEECSCCCBTTB-CSSCEEEEEEEECGGG
T ss_pred EecCCcEEEEEEcCCCCCCceEEEEECCEECccC-----CcccEEEecCCcEEEeeeeccCCC-CCcceEEEEEEEeCCC
Confidence 468999999999986 578899999999998643 2334443 5678888887 6 7799999999986543
Q ss_pred ceE--eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEec---CCCcEEEeeCCCEEEcC
Q psy14886 74 TRY--SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIFENGNLLISP 148 (505)
Q Consensus 74 ~~~--~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~---~~~~~~~~~~~~l~i~~ 148 (505)
... ..+.+.|.. +|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...+.....++.|.|.+
T Consensus 107 ~~~~s~~~~l~v~~-p~~~~~~~--~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 183 (403)
T 3laf_A 107 GSIISRTAKVMVAG-PLRFLSQT--ESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183 (403)
T ss_dssp CEEECCCEEEEECC-CCEECSCC--CCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECS
T ss_pred ccEEEEEEEEEecC-CCccccCC--CcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcc
Confidence 332 245566654 55554443 45678999999999999999999999999998774 34455556677899999
Q ss_pred CCCCCCEEEEEEEEcCCCcee-eeEEEEEEeCCee-----eeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 149 VSRDDSGIYSCTATNVHGMDE-SKGRLIVLHGPSY-----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~~-~~~~l~v~~~p~~-----~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
+..+|+|.|+|.+.|..+... ..+.+.|...|.. ....+....+..|+.+.|.|.+.+.|.+ .+.|++++..
T Consensus 184 ~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~ 261 (403)
T 3laf_A 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPP--SFTWLRGEEV 261 (403)
T ss_dssp CCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCC--EEEEEETTEE
T ss_pred cccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCC--eEEEEECCee
Confidence 999999999999999877644 3477777665532 2234556678899999999999998766 6779999988
Q ss_pred ecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc-eEEEEEeCCeEEEEeec
Q psy14886 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG-VQVVEVHKTSATIQWTD 301 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~-~~~~~~~~~~v~l~w~~ 301 (505)
+.... .......+..|.|..+..+|.|.|+|.|.|..|..+..+.|.|..+|..... .......+..+.|.|..
T Consensus 262 ~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~ 336 (403)
T 3laf_A 262 IQLRS-----KKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAV 336 (403)
T ss_dssp CCCSS-----SSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEE
T ss_pred ccCCC-----ceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEE
Confidence 76432 1223345678999999999999999999999999888888888765532110 01122345567777653
Q ss_pred CCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 302 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 302 ~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
...+.....|......+.............+.+.. +...+.+.|+|.|.|..|...
T Consensus 337 -------------~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~ 392 (403)
T 3laf_A 337 -------------SGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILG-VVKSDEGFYQCVAENEAGNAQ 392 (403)
T ss_dssp -------------EEESCCEEEEEETTEECCCSSSEEEETTTEEEESS-CCGGGCEEEEEEEEETTEEEE
T ss_pred -------------eeccCCEEEEEECCEECCCCCcEEEecCccEEEec-cccccCEEEEEEEEcCCceEE
Confidence 22222222333332222111111112333455555 889999999999999999864
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=260.24 Aligned_cols=464 Identities=16% Similarity=0.149 Sum_probs=281.5
Q ss_pred CCCCCceEEEEEEeccCC---CeEEEEECCEECc-----CC--CCCCCCCCcEEEEC------CeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVPD---VTYSWFRNGELLN-----SE--TLPLEDQDRYFIQD------NVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~---~~~~W~~~~~~l~-----~~--~~~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|.+.+.|. ..+.|+|++..+. .. .......+|+.+.. .+|.|.+++ .+|+|.|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~-~~D~G~Y 90 (585)
T 2ocw_A 12 SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS-QDDSGRY 90 (585)
T ss_pred EecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC-cccCEEE
Confidence 468999999999988653 4899999976331 10 00011234555532 369999999 9999999
Q ss_pred EEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEec----C-------
Q psy14886 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIG----S------- 132 (505)
Q Consensus 65 ~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~----~------- 132 (505)
+|.+.|..+.....+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.+ .+.+.|++++.... .
T Consensus 91 ~C~~~n~~~~~~~~~~l~V~~-~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~ 167 (585)
T 2ocw_A 91 KCGLGINSRGLSFDVSLEVSQ-GPGLLNDT--KVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP 167 (585)
T ss_pred EEEcccCCCCceEEEEEEEec-CccccCCC--ccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCc
Confidence 999998887777788888885 66665543 556789999999999998654 56899999875321 1
Q ss_pred --CCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEe
Q psy14886 133 --GGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204 (505)
Q Consensus 133 --~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~ 204 (505)
..+..+..++ +|.|.++..+|+|.|+|.|.|..|.....+.|.|..++ +..+.+..|+.+.|.|.+
T Consensus 168 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------p~~~~~~~G~~v~l~C~~ 241 (585)
T 2ocw_A 168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE------PELVYEDLRGSVTFHCAL 241 (585)
T ss_pred cccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC------CceeEEcCCCcEEEEEEc
Confidence 2344444333 59999999999999999999999988888888886644 234457789999999997
Q ss_pred eecCCCC-eEEEEE-eCCEE---ecCCCCC--cccCCeeeec----CC--eEEEecCCCCCCEEEEEEEEecCCcEE---
Q psy14886 205 HTEELLD-VAYIWT-HNGVR---IGNMDLN--ELETPNINID----GG--LLEITNASFADAGEYECVVKSTVGKIS--- 268 (505)
Q Consensus 205 ~~~~~~~-~~~~w~-~~~~~---~~~~~~~--~~~~~~~~~~----~~--~l~i~~~~~~~~g~y~C~~~n~~g~~~--- 268 (505)
+.+.+. +.|.|. +++.. +...... .......... .+ .|.|..+..+|.|.|+|.|.|. |...
T Consensus 242 -~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~ 319 (585)
T 2ocw_A 242 -GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGS 319 (585)
T ss_pred -CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccC
Confidence 444433 788997 77731 1110000 0000111111 23 7999999999999999999995 4433
Q ss_pred --EEEEEEEcCCCCCCCce-EEEEEeCCeEEEEeecCCCCCCCCceEEEEEEe--CCCCCeEEeeec-c---ccceeee-
Q psy14886 269 --TKTTVIVEGPPGLPGGV-QVVEVHKTSATIQWTDGATNGRPITHYKIIART--NWNSTWFNVSEH-V---IGKEVDR- 338 (505)
Q Consensus 269 --~~~~l~v~~~p~~p~~~-~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~--~~~~~w~~~~~~-~---~~~~~~~- 338 (505)
..+.|.|..+|..+..+ .+....+..+.|.|.... ...+...|.+.+.. .+.......... . .......
T Consensus 320 ~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~-~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~ 398 (585)
T 2ocw_A 320 PIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNR-KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLL 398 (585)
T ss_pred ceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCC-CCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEe
Confidence 77888888776544322 234457788999998532 12222334333322 211000000000 0 0000000
Q ss_pred ---ecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCC-CCCCceeeeeccccccEEEEEEeCCccc
Q psy14886 339 ---YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP-YQAPSRIGGGGGKIGDLSISWEPLPREK 414 (505)
Q Consensus 339 ---~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p-~~~P~~~~~~~~~~~~v~l~W~~~~~~~ 414 (505)
..+...+.+.+ +...+.+.|+|.| |..|....+.. +......| ...|..+.+. ....+.|.|... ...
T Consensus 399 ~~~~~g~~~L~I~~-v~~~D~G~Y~C~a-n~~g~~~~~~~---l~V~~~~p~~~~~~~~~v~--~G~~v~L~C~~~-~~~ 470 (585)
T 2ocw_A 399 EEPGNGTFTVILNQ-LTSRDAGFYWCLT-NGDTLWRTTVE---IKIIEGEPNLKVPGNVTAV--LGETLKVPCHFP-CKF 470 (585)
T ss_pred ccCCCcEEEEEECC-CChhhCEEEEEcc-cCCCccceeEE---EEEecCccccccCCceeEe--cCCcEEEEEEec-CCC
Confidence 00112244444 8999999999999 98876533222 11111111 1123444443 346788888761 111
Q ss_pred cCCCCceEEEEEEEcCCCCcEE-------EEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 415 QNAPNIYYKIFWRKKNDTEFQS-------ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 415 ~~~~i~~Y~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
.+ .-.+.|.|...+...... .......+.....+.|.++...-.=.++..|.|.+|.+....+......|+
T Consensus 471 ~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 471 SS--YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred CC--CccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 11 234677777766211000 001111122234677777776666667788999999876553444444333
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=258.19 Aligned_cols=336 Identities=24% Similarity=0.330 Sum_probs=236.4
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCC-CCCeEEEEEEEcccCceEe-eE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQCRAKNQLKTRYS-SA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~~~~~~~~~~~-~~ 79 (505)
.+|+.++|.|.+.|.|.+.+.|+|+|..+... ...++...+++|.|.++. . +|+|.|+|.+.|..|...+ .+
T Consensus 20 ~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-----~~~~~~~~~~~L~i~~~~-~~~D~G~Y~C~a~n~~g~~~s~~~ 93 (382)
T 1cs6_A 20 SAEEKVTLTCRARANPPATYRWKMNGTELKMG-----PDSRYRLVAGDLVISNPV-KAKDAGSYQCVATNARGTVVSREA 93 (382)
T ss_dssp CSCCEEEECCEEEEESCCEEEEEETTEECCCS-----TTSSEEEETTEEEEESCC-HHHHCEEEEEEEEETTEEEECCCE
T ss_pred CCCCcEEEEEEecCCCCCEEEEEECCEECCcC-----CCccEEeeCCeEEEeccc-ccccCEEEEEEEEcCCcEEEecce
Confidence 58999999999999999999999999998743 346778888999999998 7 9999999999998876544 57
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEec--CCCcEEEe-eCCCEEEcCCCCCCCE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--SGGRRKIF-ENGNLLISPVSRDDSG 155 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~--~~~~~~~~-~~~~l~i~~v~~~d~G 155 (505)
.|.|... +.+.... .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+. .+.+.... ..+.|.|.++..+|+|
T Consensus 94 ~l~v~~~-~~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 171 (382)
T 1cs6_A 94 SLRFGFL-QEFSAEE-RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171 (382)
T ss_dssp EEEEEEE-CCCCSSC-CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCE
T ss_pred EEEeecc-ccccccC-CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCe
Confidence 7777753 4333332 345678999999999996 455788999999987642 33333333 3468999999999999
Q ss_pred EEEEEEEcCCCceeee-----EEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEec
Q psy14886 156 IYSCTATNVHGMDESK-----GRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~-----~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~ 224 (505)
.|+|.+.+..|..... +.+.+.. +|.+....+....+..|+.+.|.|.+.+.|.+ .+.|++++..+.
T Consensus 172 ~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~--~i~W~~~~~~~~ 249 (382)
T 1cs6_A 172 NYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP--QIKWRKLDGSQT 249 (382)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCC--EEEEEECCSCCS
T ss_pred eEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCC--EEEEEECCcccc
Confidence 9999999887543322 3444432 34343334556778899999999999998765 567998776543
Q ss_pred CCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc-eEEEEEeCCeEEEEeecCC
Q psy14886 225 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG-VQVVEVHKTSATIQWTDGA 303 (505)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~-~~~~~~~~~~v~l~w~~~~ 303 (505)
. ........|.|..+..+|.|.|+|.|.|..|.....+.|.|..+|..... .......+..+.|.|...
T Consensus 250 ~---------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~- 319 (382)
T 1cs6_A 250 S---------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS- 319 (382)
T ss_dssp C---------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEE-
T ss_pred c---------EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEee-
Confidence 2 11234568999999999999999999999999888888888765532111 112234566777777631
Q ss_pred CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 304 TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 304 ~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
+.|...+. |......+........ ....+.+.+ +...+.+.|+|.|.|..|...
T Consensus 320 --g~p~p~v~----------W~~~g~~~~~~~~~~~-~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~ 373 (382)
T 1cs6_A 320 --GKPRPAVR----------WLRDGQPLASQNRIEV-SGGELRFSK-LVLEDSGMYQCVAENKHGTVY 373 (382)
T ss_dssp --EESCCEEE----------EEETTEECCCCSSEEE-ETTEEEESS-CCGGGCEEEEEEEEETTEEEE
T ss_pred --eecCCEEE----------EEECCEECCCCceEEE-ECCEEEECc-CCcccCEEEEEEEEeCCCeEE
Confidence 22222222 3332222211100011 122445554 999999999999999999764
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=262.52 Aligned_cols=338 Identities=18% Similarity=0.268 Sum_probs=233.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCC------CeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD------PAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d------~G~Y~C~~~~~~~ 73 (505)
+.+|+.++|.|.+.|.|.+.|+|+| ||..+... ...+....+++|.|.+++ .+| +|.|+|.|.|..|
T Consensus 16 ~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~-----~~~~~~~~~~~L~i~~~~-~~d~~~~~d~G~Y~C~a~n~~g 89 (388)
T 2v5m_A 16 FSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV-----PGLRQISSDGKLVFPPFR-AEDYRQEVHAQVYACLARNQFG 89 (388)
T ss_dssp EETTTCEEEECEEEEESCCEEEEEETTSCBCCCB-----TTTBEECSTTEEEECCCC-GGGCCHHHHEEEEEEEEEETTE
T ss_pred EEcCccEEEEEECCCCCCCEEEEEcCCCCccccC-----CCceEEcCCceEEecccC-hhhccccccCceEEEEEEccCC
Confidence 3589999999999999999999999 78777632 122333467899999999 887 9999999999887
Q ss_pred ceE-eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCC---CeEEEEECCEEecC-----CCcEEEeeCCCE
Q psy14886 74 TRY-SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK---PKFVWKKDGNIIGS-----GGRRKIFENGNL 144 (505)
Q Consensus 74 ~~~-~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~---~~i~W~~~g~~~~~-----~~~~~~~~~~~l 144 (505)
... ..+.|.+.. +|.+...+ ....+.+|+.+.|.|.+.+.+. +.+.|++++..+.. ..+.....++.|
T Consensus 90 ~~~s~~~~v~v~~-~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L 166 (388)
T 2v5m_A 90 SIISRDVHVRAVV-AQYYEADV--NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGEL 166 (388)
T ss_dssp EEECCCEEEEEEC-CCCCCCBC--CCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCE
T ss_pred eEEecceEEEEcc-ccccccCc--cceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcE
Confidence 643 356677764 55555443 3467899999999999988653 69999998876532 346666677899
Q ss_pred EEcCCCCCCC-EEEEEEEEcCCCceee-e---EEEEEEeC-----CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEE
Q psy14886 145 LISPVSRDDS-GIYSCTATNVHGMDES-K---GRLIVLHG-----PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214 (505)
Q Consensus 145 ~i~~v~~~d~-G~y~C~~~~~~g~~~~-~---~~l~v~~~-----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 214 (505)
.|.+++.+|. |.|+|.+.+..+.... . ..+.|..+ |...........+..|+.+.|.|.+.+.|.+ .+
T Consensus 167 ~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v 244 (388)
T 2v5m_A 167 HIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP--SF 244 (388)
T ss_dssp EESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCC--EE
T ss_pred EEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCC--EE
Confidence 9999999999 9999999987643322 1 35566543 2111112234567889999999999998766 46
Q ss_pred EEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc-eEEEEEeCC
Q psy14886 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG-VQVVEVHKT 293 (505)
Q Consensus 215 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~-~~~~~~~~~ 293 (505)
.|++++......... ............|.|..+..+|.|.|+|.|.|..|..+..+.|.|..+|..... .......+.
T Consensus 245 ~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~ 323 (388)
T 2v5m_A 245 RWYKFIEGTTRKQAV-VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 323 (388)
T ss_dssp EEEEECTTSSCEEEC-CCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTS
T ss_pred EEEecCCCCcccccc-cccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCC
Confidence 698864322110000 001223344678999999999999999999999999888888888765532110 112233455
Q ss_pred eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 294 SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 294 ~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
.+.|.|.. ...+.....|......+. .+...+.+.. +...+.+.|+|.|.|..|...
T Consensus 324 ~~~l~C~~-------------~g~p~p~i~W~~~g~~i~-------~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~ 380 (388)
T 2v5m_A 324 PAVFTCQY-------------TGNPIKTVSWMKDGKAIG-------HSESVLRIES-VKKEDKGMYQCFVRNDRESAE 380 (388)
T ss_dssp CEEEEEEE-------------EEECCCEEEEEETTEECS-------CCSSEEEESS-CCGGGCEEEEEEEECSSCEEE
T ss_pred CEEEEEEe-------------ccccCCeEEEEECCEECc-------cCCCEEEEec-CChhhCEEEEEEEEcCCCcEE
Confidence 66677653 222222334544333222 1223444554 999999999999999999764
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=249.32 Aligned_cols=281 Identities=25% Similarity=0.345 Sum_probs=221.7
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEe--eCC--CEEEcCCCCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIF--ENG--NLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~--~~~--~l~i~~v~~~d~G~y~C~~ 161 (505)
+|.|...+ ....+.+|+++.|.|.+.+.|.+.+.|+++|..+... .++.+. .++ .|.|.+++.+|+|.|+|.|
T Consensus 4 ~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 81 (305)
T 2nzi_A 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81 (305)
T ss_dssp CCEEEECC--CCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred CCeeeecc--cceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence 56665554 4577999999999999999999999999999988653 334332 233 6999999999999999999
Q ss_pred EcCCCceeeeEEEEEEeCCeeeee----CCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee
Q psy14886 162 TNVHGMDESKGRLIVLHGPSYYEQ----LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~~p~~~~~----~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 237 (505)
.|..|.....+.|.|..+|.+... .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ....
T Consensus 82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~-----~~~~ 154 (305)
T 2nzi_A 82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLIDNNGH-----YQVI 154 (305)
T ss_dssp EETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCC--EEEEEESSSBCCSSSS-----CEEE
T ss_pred EcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCC--EEEEEECCEECCCCCc-----EEEE
Confidence 999998888888888765544221 1235667889999999999998766 6679998877654321 1111
Q ss_pred --ecCCeEEEec-CCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEE
Q psy14886 238 --IDGGLLEITN-ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYK 313 (505)
Q Consensus 238 --~~~~~l~i~~-~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~ 313 (505)
.....|.|.. +...|.|.|+|.|.|..|.....+.|.+..+|.+|..+.+.......+.|+|.++. +++.++..|.
T Consensus 155 ~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~ 234 (305)
T 2nzi_A 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYI 234 (305)
T ss_dssp ECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEE
T ss_pred EcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEE
Confidence 1235788888 99999999999999999999999999999999999999888889999999999875 4566889999
Q ss_pred EEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCC
Q psy14886 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387 (505)
Q Consensus 314 v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~ 387 (505)
++++......|....... ...+.+.+ |.+++.|.|+|.|.|..|.+.+|..+..+.+.+..|.
T Consensus 235 v~~~~~~~~~w~~~~~~~----------~~~~~i~~-l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~~~p~ 297 (305)
T 2nzi_A 235 VEKCATTAERWLRVGQAR----------ETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTR 297 (305)
T ss_dssp EEEEETTSCCEEEEEEES----------SSEEEECS-CCSSCEEEEEEEEEETTEECCCCCCCCCEECCC----
T ss_pred EEEecCCCCccEECcccc----------CceEEecC-CCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCCcccc
Confidence 999999889998865432 23445555 9999999999999999999999988766666555443
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=282.84 Aligned_cols=438 Identities=21% Similarity=0.286 Sum_probs=286.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.+.|.+.+.|+|+|..+... .+.|.|.+++ .+|+|.|+|.+.|..+.....+.
T Consensus 355 v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------------~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~ 420 (816)
T 3dmk_A 355 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------------ESVLRIESVK-KEDKGMYQCFVRNDRESAEASAE 420 (816)
T ss_dssp CCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------------SSEEEESSCC-GGGCEEEEEEEECSSCEEEECCE
T ss_pred ecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------------CCEEEEcCCC-HHHCEEEEEEEECCCCcEEEEEE
Confidence 568999999999999999999999999988631 4689999999 99999999999998887777777
Q ss_pred EEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe----eCC----CEEEcCCC
Q psy14886 81 LRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENG----NLLISPVS 150 (505)
Q Consensus 81 l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----~~~----~l~i~~v~ 150 (505)
+.|.. .+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+.... .++ .|.|.++.
T Consensus 421 l~v~~~~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 498 (816)
T 3dmk_A 421 LKLGGRFDPPVIRQAF--QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVH 498 (816)
T ss_dssp EECCCSSCCCEEEEEC--CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCC
T ss_pred EEEccccCCCceEecC--cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeecc
Confidence 77752 345444433 3456889999999999999999999999999998766655432 122 49999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 230 (505)
.+|+|.|+|.|.|..|.....+.|.|...|.+. ......+..|+.+.|.|.+.+.|.+ .+.|++++..+....
T Consensus 499 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~p~~--~i~W~k~~~~l~~~~--- 571 (816)
T 3dmk_A 499 ANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR--QMEKKAIVAGETLIVTCPVAGYPID--SIVWERDNRALPINR--- 571 (816)
T ss_dssp TTTCEEEEEEEEETTEEEEEEEEEEECSSCEEC--CCCCEEEETTCCEEEECCEECSSEE--EEEEEETTEESCCST---
T ss_pred ccCCEEEEEEEEECCCeEEEEEEEEEecCCeeE--ccCCeEEecCCeEEEEEEecCCCCC--EEEEEECCeEcccCC---
Confidence 999999999999999998888999997766442 3445678899999999999987654 677999998876432
Q ss_pred ccCCeeeecCCeEEEecCC-CCCCEEEEEEEEecCCcE-EEEEEEEEcCCCCCCC--ceEEEEEeCCeEEEEeecCCCCC
Q psy14886 231 LETPNINIDGGLLEITNAS-FADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPG--GVQVVEVHKTSATIQWTDGATNG 306 (505)
Q Consensus 231 ~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~~-~~~~~l~v~~~p~~p~--~~~~~~~~~~~v~l~w~~~~~~~ 306 (505)
......++.|.|..+. .+|.|.|+|.|.|..|.. ...+.+.+..+|.... ........+..++|.|.... +
T Consensus 572 ---~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~--~ 646 (816)
T 3dmk_A 572 ---KQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPG--G 646 (816)
T ss_dssp ---TEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCC--S
T ss_pred ---ceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeC--C
Confidence 2223356789999997 589999999999999864 4566777766654321 11123456789999998532 2
Q ss_pred CCCceEEEEEEeCCCCCeEEeeeccccceeeeecC-ceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCC
Q psy14886 307 RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385 (505)
Q Consensus 307 ~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~ 385 (505)
.+...+.+.. .+... ... .......... ...+.+.. +...+.+.|+|.|.|..|....+... .+..++..
T Consensus 647 ~~~~~i~W~~--~g~~l----~~~-~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~~~~~~l-~V~~~P~~ 717 (816)
T 3dmk_A 647 DLPLNIDWTL--DGQAI----SED-LGITTSRVGRRGSVLTIEA-VEASHAGNFTCHARNLAGHQQFTTPL-NVYVPPRW 717 (816)
T ss_dssp SSCCEEEEEE--TTBCC----CGG-GTCEEEEETTTEEEEEEES-CCGGGCEEEEEEEECSSCEEEEEEEE-CEEEEEEE
T ss_pred CCCCEEEEEE--CCeEc----CCC-CCeeEEEcCCCeeEEEEcc-CChhhCEEEEEEEEeCCccEEEEEEE-EEEeCCce
Confidence 2222344332 11100 000 0000011112 23444555 99999999999999999987543322 12111110
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
...|....+. ....+.|.+.. .+..+. .|.|...+.. .................+.|.++.+.-.=.
T Consensus 718 -~~~~~~~~v~--~G~~v~l~C~~----~g~P~p---~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 787 (816)
T 3dmk_A 718 -ILEPTDKAFA--QGSDAKVECKA----DGFPKP---QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGY 787 (816)
T ss_dssp -EECCCCEEEE--TTCCEEEECEE----EEESCC---EEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEE
T ss_pred -eeecccceec--CCCcEEEEEEE----ecCCCC---eEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeE
Confidence 1122233332 23445555543 111111 3444443210 000000000000011145666666666666
Q ss_pred EEEEEecCCCCCCCCceEEEeec
Q psy14886 463 VKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
++..|.|.+|.+..+-...+.-.
T Consensus 788 Y~C~a~N~~G~~~~~v~~~~~~~ 810 (816)
T 3dmk_A 788 YLCEAINGIGSGLSAVIMISVQA 810 (816)
T ss_dssp EEEEEECSSSSCEEEEEEEEEEC
T ss_pred EEEEEEeCCCCCcEEEEEEEeec
Confidence 78889999999876655555443
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=264.96 Aligned_cols=341 Identities=23% Similarity=0.322 Sum_probs=235.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE--EECCeEEEE----cCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF--IQDNVLTIR----YLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~--~~~~~L~i~----~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|++++|.|.+.|.|.+.|.|+|+|..+.... ..++. ..+++|.|. +++ .+|+|.|+|.+.|..|.
T Consensus 29 v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~~~~l~i~~~~~~~~-~~D~G~Y~C~a~n~~g~ 102 (404)
T 3p3y_A 29 VDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK-----DPRVSMRRRSGTLVIDFRSGGRP-EEYEGEYQCFARNKFGT 102 (404)
T ss_dssp ECSSSCCCCCEEECCSSCCEEEEEETTEECCGGG-----CSSCBCCSSSCCCBCCCTTTCCT-TSSCEEEEEEEECSSCE
T ss_pred EcCCCCEEEEEEecCCCCCeEEEEECCEEeeeec-----CCcceEecCCceEEEEeccCCCC-ccCCEEEEEEEEcCCCe
Confidence 4689999999999999999999999999886321 12222 235667665 788 89999999999998887
Q ss_pred eE-eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCE-EecCCCcEEEeeCCCEEEcCCCC
Q psy14886 75 RY-SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSR 151 (505)
Q Consensus 75 ~~-~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~-~~~~~~~~~~~~~~~l~i~~v~~ 151 (505)
.. ..+.|.|.. +|.+.... .....+.+|+.+.|.|.+ .+.|.+.+.|++++. .+....+.....++.|.|.++..
T Consensus 103 ~~s~~~~l~V~~-~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~ 180 (404)
T 3p3y_A 103 ALSNRIRLQVSK-SPLWPKEN-LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVML 180 (404)
T ss_dssp EEEEEEEEEECC-CCCCCCCC-CCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCS
T ss_pred EeeeeEEEEEec-cCccccCC-CCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeee
Confidence 65 457778875 44433322 233678999999999998 778889999999874 44445566666778999999999
Q ss_pred CC-CEEEEEEEEcCCCceee---eEEEEEEeCCe-------eeeeC--CCceEEEeeccEEEEEEeeecCCCCeEEEEEe
Q psy14886 152 DD-SGIYSCTATNVHGMDES---KGRLIVLHGPS-------YYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 218 (505)
Q Consensus 152 ~d-~G~y~C~~~~~~g~~~~---~~~l~v~~~p~-------~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~ 218 (505)
.| +|.|+|.+.|..+.... .+.+.+...+. +.... .....+..|+.+.|.|.+.+.|.+ .+.|++
T Consensus 181 ~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~--~v~W~~ 258 (404)
T 3p3y_A 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP--DIAWYK 258 (404)
T ss_dssp GGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCC--EEEEEE
T ss_pred ccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCC--cEEEEE
Confidence 99 59999999998776432 24555543222 11110 123457889999999999887765 677999
Q ss_pred CCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCce-EEEEEeCCeEEE
Q psy14886 219 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSATI 297 (505)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~-~~~~~~~~~v~l 297 (505)
++..+.... ......+..|.|..+..+|.|.|+|.|.|..|.....+.|.|..+|...... ......+..+.|
T Consensus 259 ~~~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l 332 (404)
T 3p3y_A 259 KGGDLPSDK------AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRL 332 (404)
T ss_dssp TTBCCCTTT------EEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEE
T ss_pred CCEECCCCc------ccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEE
Confidence 988775432 2334446789999999999999999999999998888999887665311111 122334566777
Q ss_pred EeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccce--eeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 298 QWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE--VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 298 ~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
.|... +.|.. ...|......+.... .........+.+.. +...+.+.|+|.|.|..|...
T Consensus 333 ~C~~~---g~p~p----------~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~ 394 (404)
T 3p3y_A 333 VCRAN---GNPKP----------TVQWMVNGEPLQSAPPNPNREVAGDTIIFRD-TQISSRAVYQCNTSNEHGYLL 394 (404)
T ss_dssp ECEEE---EESCC----------EEEEEETTEEGGGSCCCTTEEEETTEEEESS-CCSSCCCEEEEEEEETTEEEE
T ss_pred EEEcc---ccCCC----------ceEEEECCEecCCCCCCceEEecCCEEEEee-cCHHHCEEEEEEEEeCCCcEE
Confidence 77631 12222 223333222221100 00000122444554 999999999999999999764
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=251.02 Aligned_cols=259 Identities=27% Similarity=0.457 Sum_probs=189.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE---EC---CeEEEEcCCCC-CCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI---QD---NVLTIRYLNPE-RDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~---~~---~~L~i~~~~~~-~d~G~Y~C~~~~~~~ 73 (505)
+.+|++++|.|.+.|.|.+.|+|+|+|..+.. .++.. .+ ..|.|.+++ . +|+|.|+|.+.|..|
T Consensus 18 v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~--------~~~~~~~~~~~~~~~L~i~~~~-~~~D~G~Y~C~a~n~~g 88 (304)
T 2yd9_A 18 GVSGGVASFVCQATGDPKPRVTWNKKGKKVNS--------QRFETIEFDESAGAVLRIQPLR-TPRDENVYECVAQNSVG 88 (304)
T ss_dssp EETTSCEEEEEEEECSSCCEEEEC-------C--------TTEEEEEETTTTEEEEEECSCC-TTTTCSEEEEEEECSSC
T ss_pred ecCCCeEEEEEEEEEeCCCeEEEEECCEECCC--------CceEEEEecCCCceEEEEeccc-ccCCCeEEEEEEECCCC
Confidence 35899999999999999999999999998752 23322 22 579999999 8 999999999999988
Q ss_pred ceEeeEEEEEEecC------CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC---CcEEEeeCCCE
Q psy14886 74 TRYSSAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNL 144 (505)
Q Consensus 74 ~~~~~~~l~v~~~~------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~---~~~~~~~~~~l 144 (505)
.....+.|.|...+ |.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+.....++.|
T Consensus 89 ~~~~~~~l~V~~~~~~p~~~p~i~~~~--~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L 166 (304)
T 2yd9_A 89 EITVHAKLTVLREDQLPSGFPNIDMGP--QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL 166 (304)
T ss_dssp EECCEEEEEEECGGGCCTTCCEEEECC--CCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCE
T ss_pred eEEEEEEEEEeccccCCCCCCeeecCC--ccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEE
Confidence 87778888888532 3333333 4466889999999999999999999999999987643 24445566789
Q ss_pred EEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCE
Q psy14886 145 LISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221 (505)
Q Consensus 145 ~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 221 (505)
.|.++..+|+|.|+|.|.|..|..... +.+.|.. .++.+...+....+..|+.+.|.|.+.+.|.| .+.|++++.
T Consensus 167 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p--~v~W~~~~~ 244 (304)
T 2yd9_A 167 QIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP--YVKWMQGAE 244 (304)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC--EEEEEETTE
T ss_pred EEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC--EEEEEECCE
Confidence 999999999999999999998876644 5555542 23333334555667889999999999998876 567999998
Q ss_pred EecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCC
Q psy14886 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281 (505)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~ 281 (505)
.+..... .......|.+..+ +|+|.|+|.|.|..|.....+.|.|..++..
T Consensus 245 ~l~~~~~-------~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 295 (304)
T 2yd9_A 245 DLTPEDD-------MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295 (304)
T ss_dssp ECSCSSS-------CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-------
T ss_pred ECCCccc-------ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCccc
Confidence 8865321 1112224555544 6899999999999999999999999876643
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=261.30 Aligned_cols=336 Identities=13% Similarity=0.094 Sum_probs=210.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+.|.+.|.|++++..+..... .....+. ..+|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 60 V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~-~~~~~~~---~~sL~I~~v~-~~D~G~Y~C~a~N~~g~~~~~~~ 134 (423)
T 3qs7_E 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-FDLQNRG---VVSMVILKMT-ETQAGEYLLFIQSEATNYTILFT 134 (423)
T ss_dssp ECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB-C-----C---EEEEEESSCC-SSSCSEEEEEEEC--CEEEEEEE
T ss_pred EecCCcEEEEEEEEcCCCCeEEEEECCCccCccce-eccccce---EEEEEEeecC-cccCEEEEEEEEcCCCcEEEEEE
Confidence 57999999999999999999999999987753211 0011111 1369999999 99999999999999888777788
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC---CcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~---~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
|.|.. +|.+. +..+ ..+..|+.+.|.|.+.|.|.|.|.|++++..+... ....+.....+ + ...|+|.|
T Consensus 135 l~V~~-~p~~~--~~~p-~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~-l---~~~d~G~Y 206 (423)
T 3qs7_E 135 VSIRN-TLLYT--LRRP-YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV-L---HELFGTDI 206 (423)
T ss_dssp EEEC------C--EEEE-EEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSE-E---CCCCSSCE
T ss_pred EEEec-Ccccc--ccCC-cEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceE-E---ecccCeEE
Confidence 88874 44332 1112 33566888899999999999999999988754321 00111111111 1 57899999
Q ss_pred EEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeee-cCCCCeEEEEEeCCEEecCCCCC---ccc
Q psy14886 158 SCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLN---ELE 232 (505)
Q Consensus 158 ~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~w~~~~~~~~~~~~~---~~~ 232 (505)
+|.|.|..|..... +.|.|...|.. .+....+..|+.+.|.|.+.+ .+.+ .+.|++++..+...... ...
T Consensus 207 ~C~A~N~~G~~~~~~~~l~V~~~p~~---~~~~~~v~~G~~v~L~C~~~g~~p~p--~i~W~k~g~~l~~~~~~~~~~~~ 281 (423)
T 3qs7_E 207 RCCARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGF--GLTWELENKALEEGNYFEMSTYS 281 (423)
T ss_dssp EEEEECSSCEEEEECEEEESSSCCCS---STTEEEEETTSCEEEEEEEEESSSCC--CEEEEESSSBCCGGGEEEEEEEE
T ss_pred EEEEEcCCCCcceeeEEEEEecCCcc---CCCceEEeCCCeEEEEEEEEcCCCCc--EEEEEECCEEccccceeeccccc
Confidence 99999999876553 56666554443 344667889999999999998 4444 45699998766432100 000
Q ss_pred CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCC---CceEEEEEeCCeEEEEeecCCCCCCCC
Q psy14886 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP---GGVQVVEVHKTSATIQWTDGATNGRPI 309 (505)
Q Consensus 233 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p---~~~~~~~~~~~~v~l~w~~~~~~~~~i 309 (505)
..........|.|..+..+|+|.|+|.|.|. ....+.|.|..+|... ....+....+..+.
T Consensus 282 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~------------- 345 (423)
T 3qs7_E 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFC------------- 345 (423)
T ss_dssp TTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCC-------------
T ss_pred CCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEE-------------
Confidence 0011222347999999999999999999997 6777888887665311 00011111223333
Q ss_pred ceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCC
Q psy14886 310 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 372 (505)
Q Consensus 310 ~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~ 372 (505)
..|.+...+.....|......+..... ............ ....+.+.|.|.|.|..|....
T Consensus 346 l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~~~~~~-~~~~D~G~YtC~A~N~~G~~~~ 406 (423)
T 3qs7_E 346 FSVRFKAYPQIRCTWTFSRKSFPCEQK-GLDNGYSISKFC-NHKHQPGEYIFHAENDDAQFTK 406 (423)
T ss_dssp EEEEEEEESCCEEEEEETTEEEECBCC-BCSSSSEEEEEC-CCTTCCSCEEEEEEETTEEEEE
T ss_pred EEEEEEEcCCCeEEEEECCEECCCccc-cccCCcEEEEEe-cccccCEEEEEEEEcCCceEEE
Confidence 345555555555666665444321100 000111111133 6678999999999999998753
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=242.98 Aligned_cols=260 Identities=22% Similarity=0.360 Sum_probs=196.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|+.++|.|.+.+.|. .+.|+| ++..+. ...++... + .+|.|.+++ .+|+|.|+|.+.|..+..
T Consensus 16 v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~-------~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~n~~g~~ 86 (291)
T 2wim_A 16 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKII-------STQRVVVQKEGVRSRLTIYNAN-IEDAGIYRCQATDAKGQT 86 (291)
T ss_dssp EETTCCEEEEEEEESCCS-EEECBCTTCCBCC-------CBTTEEEEEETTEEEEEECSCC-GGGCEEEEEEEECSSSCE
T ss_pred ecCCCcEEEEEEEeCCCC-ceEEECCCCcCcc-------CCCcEEEecCCCEEEEEEccCC-cccCEEEEEEEecccCce
Confidence 468999999999998775 899999 676665 33455442 2 489999999 999999999999988776
Q ss_pred E-eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC--CCcEEEeeCCCEEEcCCCCC
Q psy14886 76 Y-SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 76 ~-~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~~~~~l~i~~v~~~ 152 (505)
. ..+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++....++.|.|.++...
T Consensus 87 ~~~~~~l~v~~-~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 163 (291)
T 2wim_A 87 QEATVVLEIYQ-KLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS 163 (291)
T ss_dssp EEEEEEEEEEC-CCBCCSCC--CSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGG
T ss_pred EEEEEEEEecC-CcceEeCC--CChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchh
Confidence 4 356677764 55555444 445689999999999999999999999999987753 45566666788999999999
Q ss_pred CCEEEEEEEEcCCCcee--eeEEEEEEeCCeeeeeCCC-ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC
Q psy14886 153 DSGIYSCTATNVHGMDE--SKGRLIVLHGPSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~--~~~~l~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~ 229 (505)
|.|.|+|.+.+..+... ..+.+.+..+|.+...... ...+..|+.+.|.|.+.+.|.+ .+.|+++|..+.....
T Consensus 164 d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~~~- 240 (291)
T 2wim_A 164 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEK- 240 (291)
T ss_dssp GCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCC--EEEEEETTEECCCTTT-
T ss_pred hCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCC--eEEEEECCEECcCCcc-
Confidence 99999999998875543 3356666666655432211 3345679999999999988765 5679999998865321
Q ss_pred cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 230 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
......+..|.|..+..+|.|.|+|.|.|..|.....+.|.|..++
T Consensus 241 ----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 241 ----YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp ----EEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred ----EEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 1222345689999999999999999999999999999999988765
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=242.35 Aligned_cols=264 Identities=24% Similarity=0.391 Sum_probs=200.3
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEE-CCEECcCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFR-NGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~-~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|+.++|.|.+.+.| .+.+.|+| +|..+.. ...++.. ..++|.|.+++ .+|+|.|+|.+.|..+
T Consensus 14 v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~------~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~n~~g 86 (291)
T 1qz1_A 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNAN-IDDAGIYKCVVTAEDG 86 (291)
T ss_dssp EETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS------SCSSEEEEEEETTEEEEEECSCC-GGGCEEEEEEEECTTS
T ss_pred EeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc------CCceEEEEEcCCCeEEEEEecCC-CCCCEEEEEEEEcCCC
Confidence 46899999999999876 69999999 7777763 2344443 23589999999 9999999999999875
Q ss_pred c-eEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC--CCcEEEeeCCCEEEcCCC
Q psy14886 74 T-RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVS 150 (505)
Q Consensus 74 ~-~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~~~~~l~i~~v~ 150 (505)
. ....+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++....++.|.|.++.
T Consensus 87 ~~~~~~~~l~v~~-~~~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 163 (291)
T 1qz1_A 87 TQSEATVNVKIFQ-KLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK 163 (291)
T ss_dssp CEEEEEEEEEEEC-CSEEEECC--SSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCC
T ss_pred CeeEEEEEEEeec-cccccCCC--CcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCc
Confidence 4 34456777764 55555444 345688999999999999999999999999987653 345556667789999999
Q ss_pred CCCCEEEEEEEEcCCCce--eeeEEEEEEeCCeeeeeCC-CceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC
Q psy14886 151 RDDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~--~~~~~l~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~ 227 (505)
.+|+|.|+|.+.|..+.. ...+.+.|..+|.+..... ....+..|+.+.|.|.+.+.|.| .+.|++++..+....
T Consensus 164 ~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~g~~~~~~~ 241 (291)
T 1qz1_A 164 KTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP--TMSWTKDGEPIENEE 241 (291)
T ss_dssp GGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC--EEEEEETTEECCCC-
T ss_pred cccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC--cEEEEECCEECcCCC
Confidence 999999999999876433 2346677766665543322 13456689999999999998776 567999999886532
Q ss_pred CCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 228 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
... ...........|.|..+..+|.|.|+|.|.|..|..+..+.|.|..
T Consensus 242 ~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 242 EDD-EKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp -CC-SSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCC-cceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 100 0112222356899999999999999999999999999888888854
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=264.13 Aligned_cols=268 Identities=16% Similarity=0.161 Sum_probs=204.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCe-EEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPA-MYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G-~Y~C~~~~~~~~~~~ 77 (505)
+.+|+.++|.|.+.+.+.+.|+|++ ++..+. ...++.. .++.|.|.+++ .+|+| .|+|.+.|..+...+
T Consensus 126 v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~-------~~~~~~~~~~~~L~i~~~~-~~d~G~~Y~C~a~n~~~~~~s 197 (524)
T 2ec8_A 126 GKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP-------KDLRFIPDPKAGIMIKSVK-RAYHRLCLHCSVDQEGKSVLS 197 (524)
T ss_dssp EETTSCEEECCCBSCCCCSCEEEECSSSCCCC-------SSCEEEEETTTEEEEESCC-GGGTTCEEEEEEC----CCCC
T ss_pred EEcCCeEEEECcCCCCccceEEEEccCCcCcC-------CCCceeECCCccEEEeccc-hhhCCceEEEEEEECCceEEE
Confidence 3579999999999886679999998 787775 3455655 46799999999 99999 999999987766544
Q ss_pred -eEEEEEE---ecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCe-EEEEECCEEe--cCCCcEE------EeeCCCE
Q psy14886 78 -SAQLRVL---TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNII--GSGGRRK------IFENGNL 144 (505)
Q Consensus 78 -~~~l~v~---~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-i~W~~~g~~~--~~~~~~~------~~~~~~l 144 (505)
.+.|.|. ..+|.+...+ ....+.+|+++.|.|.+.+.|.+. +.|++++..+ ....+.. ....+.|
T Consensus 198 ~~~~l~V~~~~~~~p~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 275 (524)
T 2ec8_A 198 EKFILKVRPAFKAVPVVSVSK--ASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATL 275 (524)
T ss_dssp CCEECCEECCCCSCCEEECSC--SEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEE
T ss_pred EEEEEEEEeCCCCCCcEEecC--CcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEE
Confidence 6778776 3466666654 445789999999999999988775 9999998873 2221111 1224579
Q ss_pred EEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCC--CceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP--PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 145 ~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+...+. ....+..|+.+.|.|.+.+.|.|. .+.|++++..
T Consensus 276 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~-~v~W~k~g~~ 354 (524)
T 2ec8_A 276 TISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE-HQQWIYMNRT 354 (524)
T ss_dssp EESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC-EEEEESSSCB
T ss_pred EECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc-EEEEEECCee
Confidence 9999999999999999999999998889999988777655432 357788999999999999988775 3679999887
Q ss_pred ecCCCCCc--ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 223 IGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 223 ~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
+....... ............|.|..+..+|.|.|+|.|.|..|..+..+.|.|..+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 413 (524)
T 2ec8_A 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413 (524)
T ss_dssp CSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred ccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCC
Confidence 76532100 0000000123579999999999999999999999999999999987655
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=254.06 Aligned_cols=341 Identities=20% Similarity=0.221 Sum_probs=231.0
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+.+|+.++|.|.+.+ .|.+.++|+|+|..+... ..++.. .+++|.|.+++ .+|+|.|+|.+.|..|...+
T Consensus 18 v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~------~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~~s 90 (395)
T 1bih_A 18 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ------EHNAALRKDEGSLVFLRPQ-ASDEGHYQCFAETPAGVASS 90 (395)
T ss_dssp EETTSCEEECCCEESCCSSCEEEEEESSSBCCTT------TTTEEECTTSCCEEESSCC-GGGCEEEEEEEEETTEEEEC
T ss_pred EeCCCEEEEEEEEecCCCCceEEEEECCcCcccc------cceEEEecCCceEEEecCC-CCCCcEEEEEEEeCCCeEEe
Confidence 368999999999998 788999999999988743 112322 45789999999 99999999999998776553
Q ss_pred -eEEEEEEec-CCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECC---EEecC----CCcEEEeeCCCEEEc
Q psy14886 78 -SAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDG---NIIGS----GGRRKIFENGNLLIS 147 (505)
Q Consensus 78 -~~~l~v~~~-~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g---~~~~~----~~~~~~~~~~~l~i~ 147 (505)
.+.+.|... .|.+ . .....+.+|+.+.|.|.+ .+.|.+.+.|++++ .+... ..+.....++.|.|.
T Consensus 91 ~~~~l~v~~~~~p~~--~--~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 166 (395)
T 1bih_A 91 RVISFRKTYLIASPA--K--THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFT 166 (395)
T ss_dssp CCEEEEEEEEECCCC--E--EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEE
T ss_pred EEEEEEEEEeecCCc--C--CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEE
Confidence 355555532 2222 2 234567899999999996 67788999999976 22211 345666667889999
Q ss_pred CCCCCCCE---EEEEEEEcCCCceeeeEEEEEEe---CC-------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEE
Q psy14886 148 PVSRDDSG---IYSCTATNVHGMDESKGRLIVLH---GP-------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214 (505)
Q Consensus 148 ~v~~~d~G---~y~C~~~~~~g~~~~~~~l~v~~---~p-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 214 (505)
++...|.| .|+|.+.|..+............ .+ ......+....+..|+.+.|.|.+.+.|.+. +
T Consensus 167 ~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~--i 244 (395)
T 1bih_A 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGY--P 244 (395)
T ss_dssp EECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCC--C
T ss_pred EEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCe--E
Confidence 99999999 99999999988755443222211 00 0011124567788999999999999887765 5
Q ss_pred EEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEE-EEEEEEcCCCCCCCce--EEEEEe
Q psy14886 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST-KTTVIVEGPPGLPGGV--QVVEVH 291 (505)
Q Consensus 215 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~-~~~l~v~~~p~~p~~~--~~~~~~ 291 (505)
.|++++..+.......... .....+..|.|..+..+|.|.|+|.|.|..|.... .+.|.|..+|.....+ ......
T Consensus 245 ~W~~~g~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~ 323 (395)
T 1bih_A 245 NYFKNGKDVNGNPEDRITR-HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ 323 (395)
T ss_dssp EEEETTEECCCCTTSSEES-CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECT
T ss_pred EEEECCEEcCCCCceeEEE-EecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecC
Confidence 6999998876532111100 00112347999999999999999999999998655 8888887655321111 123345
Q ss_pred CCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 292 KTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 292 ~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
+..+.|.|.. ...+.....|......+....... ....+.+.+ +...+.+.|+|.|.|..|...
T Consensus 324 g~~~~l~C~~-------------~g~p~p~v~W~~~g~~~~~~~~~~--~~~~L~i~~-~~~~d~G~Y~C~a~N~~G~~~ 387 (395)
T 1bih_A 324 GQDVTIPCKV-------------TGLPAPNVVWSHNAKPLSGGRATV--TDSGLVIKG-VKNGDKGYYGCRATNEHGDKY 387 (395)
T ss_dssp TSCEEEECEE-------------EEESCCCCEEEETTEECCSSSEEE--ETTEEEESS-CCSTTCEEEEEEEEETTEEEE
T ss_pred CCeEEEEEEE-------------CcccCCeeEEEECCEECCCCceEE--ECCEEEEee-CCcccCEEEEEEEEccCCCce
Confidence 5667777763 222222334444333222111111 112445555 999999999999999999754
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=261.21 Aligned_cols=334 Identities=13% Similarity=0.082 Sum_probs=232.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|+.++|.|.+.+ .++|+|++.++. .....++|.|.+++ .+|+|.|+|.+.| |. ...+.
T Consensus 48 v~~G~~v~l~C~~~~----~v~W~~~~~~~~-----------~~~~~~~L~I~~~~-~~D~G~Y~C~a~n--g~-~~~~~ 108 (524)
T 2ec8_A 48 VRVGDEIRLLCTDPG----FVKWTFEILDET-----------NENKQNEWITEKAE-ATNTGKYTCTNKH--GL-SNSIY 108 (524)
T ss_dssp CCTTSCEEEEEECTT----EEEEEEESSSCC-----------EEECSSEEEESSCC-STTCEEEEEEETT--SC-EEEEE
T ss_pred EeCCCeEEEEEeCCc----eEEEcCCCcccc-----------ccCccceEEEcccc-hhhCEEEEEeecC--Cc-ceEEE
Confidence 578999999999976 899999987551 23356899999999 9999999999998 43 55677
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCCCEEEcCCCCCCCE-EEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYS 158 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~y~ 158 (505)
|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.+.+.+.|++ +|..+..+.++....++.|.|.++..+|+| .|+
T Consensus 109 l~V~~-p~~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~ 185 (524)
T 2ec8_A 109 VFVRD-PAKLFLVD--RSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLH 185 (524)
T ss_dssp EECCC-SSCSBCCC--CCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEE
T ss_pred EEECC-CCcccccc--cceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEE
Confidence 77774 44444333 44568899999999999987778999988 888887777777777788999999999999 999
Q ss_pred EEEEcCCCceee-eEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe--cCCCCCccc
Q psy14886 159 CTATNVHGMDES-KGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI--GNMDLNELE 232 (505)
Q Consensus 159 C~~~~~~g~~~~-~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~ 232 (505)
|.|.|..+.... .+.|.|.. .|+.+...+....+..|+.+.|.|.+.+.+.+. .+.|++++..+ .........
T Consensus 186 C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~~~ 264 (524)
T 2ec8_A 186 CSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-YSTWKRENSQTKLQEKYNSWHH 264 (524)
T ss_dssp EEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTC-EEEEEETTCSCCCCEEEEEEEC
T ss_pred EEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcE-EEEEEeCCCCCccccccccccc
Confidence 999998776644 57788862 333344445566789999999999999877653 46799988763 211100000
Q ss_pred CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc----eEEEEEeCCeEEEEeecCCCCCCC
Q psy14886 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG----VQVVEVHKTSATIQWTDGATNGRP 308 (505)
Q Consensus 233 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~----~~~~~~~~~~v~l~w~~~~~~~~~ 308 (505)
..........|.|..+..+|.|.|+|.|.|..|.....+.|.|..+|..... .......+..+.|.|... +.|
T Consensus 265 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~---g~P 341 (524)
T 2ec8_A 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYE---AFP 341 (524)
T ss_dssp SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEE---EES
T ss_pred cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEe---ecC
Confidence 0001233468999999999999999999999999888999999876643211 123344566788888731 112
Q ss_pred Cce-EEEEEEeCCCCCeEEeeeccccce--eeeec------CceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 309 ITH-YKIIARTNWNSTWFNVSEHVIGKE--VDRYT------GRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 309 i~~-y~v~~~~~~~~~w~~~~~~~~~~~--~~~~~------~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
... +. |......+.... ..... ....+.+.+ +...+.+.|+|.|.|..|...
T Consensus 342 ~p~~v~----------W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~~ 402 (524)
T 2ec8_A 342 KPEHQQ----------WIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR-LKGTEGGTYTFLVSNSDVNAA 402 (524)
T ss_dssp CCCEEE----------EESSSCBCSSSBCCEESCCSSSCCEEEEEEEECS-CCGGGCEEEEEEEECSSCEEE
T ss_pred CCcEEE----------EEECCeeccCCccceeEEccCCCceeEEEEEEee-cCcccCeEEEEEEEecCceEE
Confidence 211 22 222221111100 00000 112444444 899999999999999999853
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=254.36 Aligned_cols=263 Identities=26% Similarity=0.450 Sum_probs=209.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceE-eeE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY-SSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~ 79 (505)
.+|++++|.|.+.+.|.+.+.|+|++..+.... ...+... .+++|.|.+++ .+|+|.|+|.+.|..+... ..+
T Consensus 134 ~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~~~~~~~~~ 208 (403)
T 3laf_A 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP----GDSRVVVLPSGALQISRLQ-PGDSGVYRCSARNPASTRTGNEA 208 (403)
T ss_dssp ETTSCEEECCCEECSSCCEEEEEESSSBCCCCT----TCCSEEECTTSCEEECSCC-GGGCEEEEEEEECSSCCCBCCCE
T ss_pred EcCCeEEEEEEEcccCCCeEEEEECCEeccccC----CceEEEEcCCceEEEcccc-cccCEEEEEEEEcCCCceeccce
Confidence 579999999999999999999999998875221 2233333 46789999999 9999999999999877644 357
Q ss_pred EEEEEecCCCcc----CCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeCCCEEEcCCCCCCC
Q psy14886 80 QLRVLTLKPSFK----KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGNLLISPVSRDDS 154 (505)
Q Consensus 80 ~l~v~~~~p~~~----~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~~l~i~~v~~~d~ 154 (505)
.+.|.. .|.+. .........+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+.....++.|.|.++..+|+
T Consensus 209 ~l~v~~-~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 287 (403)
T 3laf_A 209 EVRILS-DPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287 (403)
T ss_dssp EEEEEC-CCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGC
T ss_pred eEEEec-CCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHC
Confidence 777775 33221 111124466889999999999999999999999999988643 344455567899999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCC
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 234 (505)
|.|+|.|.|..|.....+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+.... .
T Consensus 288 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~g~~~~~~~------~ 358 (403)
T 3laf_A 288 GTYTCVVTYKNENISASAELTVLVPPWFLN-HPSNLYAYESMDIEFECAVSGKPVP--TVNWMKNGDVVIPSD------Y 358 (403)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEEEEE-CCCCEECCTTCCEEECCEEEEESCC--EEEEEETTEECCCSS------S
T ss_pred EEEEEEEEcCCCceEEEEEEEEECCCcEee-cCcceEEecCCeEEEEEEEeeccCC--EEEEEECCEECCCCC------c
Confidence 999999999999888889999987766544 3556677889999999999998876 567999998876533 2
Q ss_pred eeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 235 ~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
.....+..|.|..+..+|.|.|+|.|.|..|.....+.|.|..||
T Consensus 359 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 359 FQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403 (403)
T ss_dssp EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred EEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence 223356789999999999999999999999999999999998764
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=249.21 Aligned_cols=261 Identities=18% Similarity=0.236 Sum_probs=194.7
Q ss_pred CCCCCceEEEEEEecc---------CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGV---------PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~---------p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~ 70 (505)
|.+|++++|.|.+.+. |.+.|.|+|++..+.. ..+. ..+++|.|.+++ .+|+| .|+|.|.|
T Consensus 41 v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~-------~~~~-~~~~~L~i~~v~-~~D~Gs~Y~C~a~n 111 (329)
T 3oq3_B 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP-------LNRR-VKNGDLWIANYT-SNDSHRRYLCTVTT 111 (329)
T ss_dssp ECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE-------CSTT-EETTEEEESSCC-GGGGGCCEEEEEEC
T ss_pred EECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc-------cCce-eecceEEEcCCC-hHhCCCcEEEEEEe
Confidence 4689999999999873 5689999999987652 1222 568899999999 99999 99999999
Q ss_pred ccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEecCC-CcEEEeeCCCEEEcC
Q psy14886 71 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSG-GRRKIFENGNLLISP 148 (505)
Q Consensus 71 ~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~-~~~~~~~~~~l~i~~ 148 (505)
..|.......+.|...+|.+.... ....+.+|+.+.|.|.+.+.| .+.+.|++++..+... .++.. .++.|.|.+
T Consensus 112 ~~g~~~~~~~~~v~~~~p~~~~~~--~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~-~~~~L~I~~ 188 (329)
T 3oq3_B 112 KNGDCVQGIVRSHIRKPPSCIPET--YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ-SGQNLIIHN 188 (329)
T ss_dssp TTSCEEEEEEEEEECCCCSCEEEE--EETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEE-ETTEEEECS
T ss_pred CCCceeeEEEEEEEcCCCcEeccc--cceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEec-CCCEEEEee
Confidence 887655544445554455432221 122356799999999999999 8999999999988633 33333 378899999
Q ss_pred CCCCCCEEEEEEEEcC--CCceeee----EEEEEEeCC----eeeeeCCCceEEEeeccEEEEEEeeecC--CCCeEEEE
Q psy14886 149 VSRDDSGIYSCTATNV--HGMDESK----GRLIVLHGP----SYYEQLPPKITIAAHRNLQLRCSAHTEE--LLDVAYIW 216 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~--~g~~~~~----~~l~v~~~p----~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~~~w 216 (505)
+..+|+|.|+|.|.|. .|..... +.|.|..+| +.+ .+....+..|+.+.|.|.+.+.| .+.+.+.|
T Consensus 189 v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W 266 (329)
T 3oq3_B 189 PELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266 (329)
T ss_dssp CCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEE
T ss_pred cChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEE
Confidence 9999999999999987 6544443 667777665 333 45667888999999999999987 33347789
Q ss_pred EeCCEEecCCCCCcccC--CeeeecCCeEEEecCCCCCCE-EEEEEEEecCCcEEEEEEEEE
Q psy14886 217 THNGVRIGNMDLNELET--PNINIDGGLLEITNASFADAG-EYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 217 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g-~y~C~~~n~~g~~~~~~~l~v 275 (505)
++++..+.......... .........|.|..+..+|.| .|+|.|.|..|.....+.|.|
T Consensus 267 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp ECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 99987753221100000 000013568999999999999 999999999999888888776
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=250.36 Aligned_cols=270 Identities=17% Similarity=0.178 Sum_probs=202.9
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|+.++|.|.+.+.| .+.|.|+|++..+... .....++...+++|.|.+++ .+|+|.|+|.+.|..+......
T Consensus 17 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~---~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~~~ 92 (315)
T 1itb_B 17 SSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVS---TEQASRIHQHKEKLWFVPAK-VEDSGHYYCVVRNSSYCLRIKI 92 (315)
T ss_dssp EETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSC---CCTTSSSEECSSBEECTTCC-GGGCSCCEECCCSSSCCCCEEC
T ss_pred EcCCCcEEEEeeccCcCCCceEEEEeCCCcCccc---cccCCcEeccCCeEEECCCC-hhhCEEEEEEEeCCceEEEEEE
Confidence 46899999999998876 7899999998654321 12345677777899999999 9999999999999888776666
Q ss_pred EEEEEecCCCccCCCCC-ceEEeeCCCeEEEEeec------CCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 80 QLRVLTLKPSFKKRPLE-SETYAGEGGNVTIFCNP------EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~-~~~~v~~g~~v~l~C~~------~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
.+.+...+|.+...+.. ....+.+|+++.|.|.+ .+.|.+.+.|++++..+..........++.|.|.++..+
T Consensus 93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~ 172 (315)
T 1itb_B 93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 172 (315)
T ss_dssp CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGG
T ss_pred EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceeh
Confidence 77766656665443311 23568899999999998 888999999999999986544444556778999999999
Q ss_pred CCEEEEEEEE-cCCCcee---eeEEEEEE-----eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 153 DSGIYSCTAT-NVHGMDE---SKGRLIVL-----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 153 d~G~y~C~~~-~~~g~~~---~~~~l~v~-----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
|+|.|+|.|. |..|... ..+.+.+. .+|.+.........+..|+.+.|.|.+.+.|.| .+.|+++|..+
T Consensus 173 d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p--~i~W~~~g~~i 250 (315)
T 1itb_B 173 HRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD--IAYWKWNGSVI 250 (315)
T ss_dssp GCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS--EEEEEETTEEC
T ss_pred hCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC--eeEEEECCEEC
Confidence 9999999999 7777763 33444444 234333222222467899999999999998776 56799999988
Q ss_pred cCCCCCcccCCe---------eeecCCeEEEecCCCCC-CEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 224 GNMDLNELETPN---------INIDGGLLEITNASFAD-AGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 224 ~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
............ .......|.|..+..+| .|.|+|.|.|..|.....+.|.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 251 DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp CTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 764311110000 01123489999999999 999999999999999999888774
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=253.99 Aligned_cols=270 Identities=20% Similarity=0.355 Sum_probs=139.1
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.+. |.+.+.|+|+|..+. ...++...+++|.|.+++ .+|+|.|+|.+.|. +.....+
T Consensus 20 v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~-------~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~-~~~~~~~ 90 (334)
T 1ry7_B 20 FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV-------PSERVLVGPQRLQVLNAS-HEDSGAYSCRQRLT-QRVLCHF 90 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCcEEEEeeCCCCCCCcceEEEECCeeCC-------CcccEEeccceEEEeecc-cccCEEEEEEEEeC-CeEEEEE
Confidence 5689999999999875 578999999999886 345666677899999999 99999999999988 6666667
Q ss_pred EEEEEec---------------------CCCccCCC--CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE
Q psy14886 80 QLRVLTL---------------------KPSFKKRP--LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136 (505)
Q Consensus 80 ~l~v~~~---------------------~p~~~~~~--~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~ 136 (505)
.|.|... +|.+.... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.
T Consensus 91 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~ 170 (334)
T 1ry7_B 91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI 170 (334)
T ss_dssp ----------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSST
T ss_pred EEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccc
Confidence 7777642 23332211 123456889999999999999999999999999887654322
Q ss_pred E----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCC----eeeeeCCCceEEEeeccEEEEEEeeecC
Q psy14886 137 K----IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP----SYYEQLPPKITIAAHRNLQLRCSAHTEE 208 (505)
Q Consensus 137 ~----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p----~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 208 (505)
. ......|.|.++...|+|.|+|.+.|..|.....+.|.|...+ .+....+....+..|+.+.|.|.+.+.|
T Consensus 171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p 250 (334)
T 1ry7_B 171 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA 250 (334)
T ss_dssp TCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSS
T ss_pred cceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCC
Confidence 1 1123469999999999999999999999988888888887632 2222234567788999999999998877
Q ss_pred CCCeEEEEEe----CCEEecCCCCCcc---cCC---eeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCC
Q psy14886 209 LLDVAYIWTH----NGVRIGNMDLNEL---ETP---NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278 (505)
Q Consensus 209 ~~~~~~~w~~----~~~~~~~~~~~~~---~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~ 278 (505)
.+ .+.|++ +|..+........ ... ........|.|..+..+|.|.|+|.|.|..|.....+.|.|...
T Consensus 251 ~p--~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 328 (334)
T 1ry7_B 251 QP--HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328 (334)
T ss_dssp CE--EEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECS
T ss_pred CC--eEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEEC
Confidence 65 677998 5555543221000 000 00111247999999999999999999999999999999999876
Q ss_pred CCC
Q psy14886 279 PGL 281 (505)
Q Consensus 279 p~~ 281 (505)
|.+
T Consensus 329 ~~~ 331 (334)
T 1ry7_B 329 EEE 331 (334)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-32 Score=248.66 Aligned_cols=259 Identities=19% Similarity=0.258 Sum_probs=194.1
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+.++|.|.+.+. |.+.+.|+|++..+.. ..++.. ...+|.|.+++ .+|+|.|+|.+.|..+....
T Consensus 18 v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~g~~~~ 89 (317)
T 2y25_A 18 VTGECNVLLKCKVANIKKETHIVWYKDEREISV-------DEKHDFKDGICTLLITEFS-KKDAGIYEVILKDDRGKDKS 89 (317)
T ss_dssp EETTTEEEEEEEEESCCTTCEEEEEETTEEECC-------SCC-----CCEEEEETTCC-STTCSCEEEEEESSSCEEEE
T ss_pred ECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCC-------CCcEEEECCeEEEEEccCC-cccCeEEEEEEECCCCcEEE
Confidence 4689999999999886 7799999999998873 233333 34689999999 99999999999998887665
Q ss_pred eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC----------CCCCeEEEEECCEEecCCCcEEEeeCC---CE
Q psy14886 78 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA----------APKPKFVWKKDGNIIGSGGRRKIFENG---NL 144 (505)
Q Consensus 78 ~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~----------~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l 144 (505)
.+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+....+......+ .|
T Consensus 90 ~~~l~v~~-~~~~~~~~--~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L 166 (317)
T 2y25_A 90 RLKLVDEA-FKELMMEV--CKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 166 (317)
T ss_dssp EECCSTHH-HHHHHHHH--HHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEE
T ss_pred EEEEEEec-CccccccC--CceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEE
Confidence 55555543 22111111 1223456666677776665 688899999999988776666665444 39
Q ss_pred EEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe--------------------CCeeeeeCCCceEEEeeccEEEEEEe
Q psy14886 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH--------------------GPSYYEQLPPKITIAAHRNLQLRCSA 204 (505)
Q Consensus 145 ~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~ 204 (505)
.|.++..+|+|.|+|.|.|..|.....+.+.+.. .|.+....+....+..|+.+.|.|.+
T Consensus 167 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~ 246 (317)
T 2y25_A 167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246 (317)
T ss_dssp EEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE
T ss_pred EECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE
Confidence 9999999999999999999988887777766531 24444444556788899999999999
Q ss_pred eecCCCCeEEEEEeCCEEecCCCCCcccCCeeeec---CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINID---GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 205 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
.+.|.+ .+.|++++..+..... ...... ...|.|..+..+|.|.|+|.|.|..|.....+.|.|..
T Consensus 247 ~g~p~p--~i~W~~~g~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 247 WGDPPP--EVSWLKNEKALASDDH-----CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp ECSSCC--EEEEEESSSEECCCSS-----EEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ecCCCC--EEEEEECCEeCCCCCc-----EEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 988765 5679999988865321 111111 13899999999999999999999999999999998874
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=240.16 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=199.6
Q ss_pred CCceEEEeeccEEEEEEeeec-----CCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEE
Q psy14886 187 PPKITIAAHRNLQLRCSAHTE-----ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261 (505)
Q Consensus 187 ~~~~~~~~g~~~~l~C~~~~~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 261 (505)
+....+..|+.++|.|.+.+. ..+...+.|.++|..+..... .......+.|.|.++... .|.|+|.|.
T Consensus 11 P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~-----~~~~~~~~~L~i~~~~~~-~g~Y~C~a~ 84 (303)
T 1i1r_A 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY-----TIINRTASSVTFTDIASL-NIQLTCNIL 84 (303)
T ss_dssp SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGC-----EEEETTEEEEEECSCCCS-EEEEEEEEE
T ss_pred cCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhhe-----eeeCCcEEEEEEcCcCCC-ceEEEEecc
Confidence 456778999999999999864 123345679999988754211 111112347999999877 599999998
Q ss_pred ecCCcE---EEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeee
Q psy14886 262 STVGKI---STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338 (505)
Q Consensus 262 n~~g~~---~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~ 338 (505)
+. |.. ...+.+.+..+|.+|.++.+.....+++.|+|.++.+.+. +.+|.|+|+......|.-..
T Consensus 85 ~~-g~~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~~-~~~Y~v~~~~~~~~~~~~~~---------- 152 (303)
T 1i1r_A 85 TF-GQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKA---------- 152 (303)
T ss_dssp ET-TTEEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECCCEEC----------
T ss_pred cC-CCcceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCCC-CcCEEEEEEecCCCCccCCC----------
Confidence 74 432 2345677888999999999988888999999999887654 57999999876433222111
Q ss_pred ecC-ceeeEEeeec-cCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc--ccccEEEEEEeCCccc
Q psy14886 339 YTG-RKEASIENVL-VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG--KIGDLSISWEPLPREK 414 (505)
Q Consensus 339 ~~~-~~~~~~~~~L-~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~--~~~~v~l~W~~~~~~~ 414 (505)
... ...+.+.+ | .+++.|.|+|.|.|..|.+.++.. .+.+....++.||.++.+... +.+++.|+|++ +..
T Consensus 153 ~~~~~~~~~i~~-L~~p~t~Y~f~V~A~N~~G~~~s~~~--~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~--p~~ 227 (303)
T 1i1r_A 153 KRDTPTSCTVDY-STVYFVNIEVWVEAENALGKVTSDHI--NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSI 227 (303)
T ss_dssp CSSCTTEEECSS-CCCTTSCEEEEEEEEETTEEEECCCE--EECGGGGEECCCCEEEEEECCSSSSSCEEEEEEC--CGG
T ss_pred cCCCceEEEECC-cCcccccEEEEEEEEcCCCCcccCCE--EECHHHeEecCCCcceEEEEecCCCCEEEEEECC--CCC
Confidence 112 23444444 9 899999999999999999864332 333444467789999988643 67899999998 345
Q ss_pred cCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCc---eEEEeec
Q psy14886 415 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE---VVTIWHD 485 (505)
Q Consensus 415 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~---~~~~~t~ 485 (505)
.++++++|.|+|+..+...|....... .......+.|.+|.|++.|.|+|+|+|.+|.|++|+ .+.+.|.
T Consensus 228 ~~~~i~~Y~v~y~~~~~~~w~~~~~~~-~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~ 300 (303)
T 1i1r_A 228 KSVIILKYNIQYRTKDASTWSQIPPED-TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300 (303)
T ss_dssp GGTSCEEEEEEEEETTCSSCEECCGGG-GCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECC
T ss_pred CCcccEEEEEEEEeCCCCCceEEcccc-CCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCC
Confidence 678999999999999877887543211 012345789999999999999999999999988765 4445553
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=253.96 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=182.3
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee-EEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS-AQL 81 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~-~~l 81 (505)
.|+.+.|.|.+.|.|.+.|+|++++..+... .......-......+. .+|+|.|+|.|.|..|..... +.|
T Consensus 153 ~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~d~G~Y~C~A~N~~G~~~~~~~~l 224 (527)
T 3qs9_E 153 MENQDALVCISESVPEPIVEWVLCDSQGESC-------KEESPAVVKKEEKVLH-ELFGTDIRCCARNELGRECTRLFTI 224 (527)
T ss_dssp CSSSSCEEEEEEESSCCEEEEEEC--------------------CEEECCSEEC-CCCSSCEEEEEECSSCEEEEECEEE
T ss_pred cCCceEEEEEEceecCCeEEEEECCCCCccc-------cccCCcEEEEeeeecc-ccCCEEEEEEEEeCCCcccceEEEE
Confidence 5778899999999999999999998765421 0000011111223345 789999999999998887654 667
Q ss_pred EEEecCCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEE---------EeeCCCEEEcCCCC
Q psy14886 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRK---------IFENGNLLISPVSR 151 (505)
Q Consensus 82 ~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~---------~~~~~~l~i~~v~~ 151 (505)
.|.. +|.+ . +....+.+|+.+.|.|.+. +.|.+.+.|+++|..+....... ....++|.|.++..
T Consensus 225 ~V~~-~p~~--~--p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 299 (527)
T 3qs9_E 225 DLNQ-TPQT--T--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299 (527)
T ss_dssp ESSS-CCCC--S--CCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCG
T ss_pred EEec-cCcc--C--CCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCc
Confidence 7764 4444 2 2467789999999999996 88999999999998775432221 11234599999999
Q ss_pred CCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeC-CCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL-PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 230 (505)
+|+|.|+|.|.|. ....+.|.|..+|.+.... .....+..|+.+.|.|.+.+.|.| .+.|+++|..+.....
T Consensus 300 ~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p--~i~W~k~g~~l~~~~~-- 372 (527)
T 3qs9_E 300 NDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRKSFPCEQK-- 372 (527)
T ss_dssp GGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCC--EEEEEETTEEEECBCC--
T ss_pred ccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCC--EEEEEECCEECcCCcc--
Confidence 9999999999987 5666788887766543322 123556789999999999999876 4679999998865321
Q ss_pred ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC
Q psy14886 231 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280 (505)
Q Consensus 231 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~ 280 (505)
.......|.|..+..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 373 -----~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~ 417 (527)
T 3qs9_E 373 -----GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ 417 (527)
T ss_dssp -----BCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCE
T ss_pred -----cccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCe
Confidence 122456899999999999999999999999998899999987663
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=252.86 Aligned_cols=336 Identities=13% Similarity=0.083 Sum_probs=209.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+.|...+.|++++..+..... +....|. ..+|.|.+++ .+|+|.|+|.+.|..+.....+.
T Consensus 60 v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~-~~~~~r~---~~SL~I~~v~-~~D~G~Y~C~~~n~~~~~~~~~~ 134 (527)
T 3qs9_E 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-FDLQNRG---VVSMVILKMT-ETQAGEYLLFIQSEATNYTILFT 134 (527)
T ss_dssp ECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB-C-----C---EEEEEESSCC-SSSCSEEEEEEEC--CEEEEEEE
T ss_pred EeccccEEEEEEEecCCceeEEEEecCCccCcccc-cCCCcce---EEEEEECcCC-hhhCeeEEEEEEeccccEEEEEE
Confidence 57999999999998878899999999997653211 1111111 1259999999 99999999999998776655555
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCE--EEcCCCCCCCEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNL--LISPVSRDDSGIYS 158 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l--~i~~v~~~d~G~y~ 158 (505)
|.|. |.+...+ ........|+.+.|.|.+.|.|.|.|.|++++..+.... ......+ ....+...|+|.|+
T Consensus 135 v~v~---~~~~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~G~Y~ 207 (527)
T 3qs9_E 135 VSIR---NTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVVKKEEKVLHELFGTDIR 207 (527)
T ss_dssp EEEC--------CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC----------------CEEECCSEECCCCSSCEE
T ss_pred EEEC---Cceeecc-CCCcEEecCCceEEEEEEceecCCeEEEEECCCCCcccc---ccCCcEEEEeeeeccccCCEEEE
Confidence 5554 2222222 122334567788999999999999999999887653211 1111111 12234578999999
Q ss_pred EEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEee-ecCCCCeEEEEEeCCEEecCCCCCc---ccC
Q psy14886 159 CTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNE---LET 233 (505)
Q Consensus 159 C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~w~~~~~~~~~~~~~~---~~~ 233 (505)
|.|.|..|..... +.|.|...|.. .+....+..|+.+.|.|.+. +.|.+ .+.|++++..+....... ...
T Consensus 208 C~A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p--~i~W~k~g~~l~~~~~~~~~~~~~ 282 (527)
T 3qs9_E 208 CCARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGF--GLTWELENKALEEGNYFEMSTYST 282 (527)
T ss_dssp EEEECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCC--CEEEECSSSCCCGGGEEEEEEEET
T ss_pred EEEEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCe--EEEEEECCEECCCCceeeeeeecc
Confidence 9999999987665 67777655554 34567788999999999997 66655 566999987664321000 000
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCC---CCceEEEEEeCCeEEEEeecCCCCCCCCc
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL---PGGVQVVEVHKTSATIQWTDGATNGRPIT 310 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~---p~~~~~~~~~~~~v~l~w~~~~~~~~~i~ 310 (505)
.........|.|..+..+|+|.|+|.|.|. ....+.|.|..+|.. +.........+..+.|.
T Consensus 283 ~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~------------ 347 (527)
T 3qs9_E 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFS------------ 347 (527)
T ss_dssp TTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEE------------
T ss_pred CcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEE------------
Confidence 111122346999999999999999999987 667778888765521 11111112223344444
Q ss_pred eEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 311 ~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
|.+...+.....|......+..... .......+.+.+ +...+.+.|+|.|.|..|...
T Consensus 348 -C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~I~~-v~~~D~G~YtC~A~N~~g~~~ 405 (527)
T 3qs9_E 348 -VRFKAYPQIRCTWTFSRKSFPCEQK-GLDNGYSISKFC-NHKHQPGEYIFHAENDDAQFT 405 (527)
T ss_dssp -EEEEEESCCEEEEEETTEEEECBCC-BCSSSSEEEEEC-CCTTCCSCEEEEEEETTEEEE
T ss_pred -EEEEecCCCEEEEEECCEECcCCcc-cccCCcEEEEec-CCcccCEEEEEEEEeCCCcEE
Confidence 4444444444556554333321111 111233445555 999999999999999999764
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=247.02 Aligned_cols=256 Identities=25% Similarity=0.440 Sum_probs=197.2
Q ss_pred CCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe--
Q psy14886 2 DNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-- 77 (505)
Q Consensus 2 ~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-- 77 (505)
.+|+.+.|.|.+. +.|.+.+.|++++.++.. ...++.. .+++|.|.+++ .+|+|.|+|.|.|..+....
T Consensus 115 ~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~~~~~~~~ 187 (384)
T 3kld_A 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ------DNRRFVSQETGNLYIAKVE-KSDVGNYTCVVTNTVTNHKVLG 187 (384)
T ss_dssp EETCCEEECCCCCSEESCEEEEEEETTEECCC------SSSEEECTTTCCEEESSCC-GGGCEEEEEEEEETTTTEEEEC
T ss_pred EcCCCeEEecCCCCCCCCeEEEEEECCCCCEe------eccEEEEcCCCcEEEeecC-HHHCceEEEEEecccccceeeC
Confidence 5799999999764 456789999999998752 2223322 45789999999 99999999999998765432
Q ss_pred -eEEEEEEe------cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEEC-CEEecCCCcEEEeeCCCEEEcCC
Q psy14886 78 -SAQLRVLT------LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFENGNLLISPV 149 (505)
Q Consensus 78 -~~~l~v~~------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~~~l~i~~v 149 (505)
...+.+.. .+|.+.... +....+.+|+++.|.|.+.|.|.+.+.|+++ +..+... ......++.|.|.++
T Consensus 188 ~~~~~~v~~~~~~~~~~p~~~~~~-~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~~L~I~~v 265 (384)
T 3kld_A 188 PPTPLILRNDGVMGEYEPKIEVQF-PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK-ARRHKSNGILEIPNF 265 (384)
T ss_dssp CCEEEEEEEEEECCCEEEEEEEEC-CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT-CEECTTSCEEEECSC
T ss_pred CceEEEEccCCcccccCCceeecC-CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc-ceecCCCcEEEECCC
Confidence 12222221 122222221 2456688999999999999999999999994 4444432 222334567999999
Q ss_pred CCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC
Q psy14886 150 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~ 229 (505)
..+|+|.|+|.|.|..|.......|.|..+|.+... +....+..|+.+.|.|.+.+.|.| .+.|+++|..+....
T Consensus 266 ~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~-~~~~~v~~g~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~-- 340 (384)
T 3kld_A 266 QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI-INDIHVAMEESVFWECKANGRPKP--TYRWLKNGDPLLTRD-- 340 (384)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC-CCCEEECTTCCEEEECEEEEESCC--EEEEEETTEECCCBT--
T ss_pred ChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccC-CCceEecCCCCEEEEeECCccCCC--eEEEEECCEECCCCc--
Confidence 999999999999999999888899999887776543 456778899999999999998876 566999999886532
Q ss_pred cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 230 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
.....++.|.|..+..+|.|.|+|.|.|..|....+..|.|.
T Consensus 341 -----~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 341 -----RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp -----TEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred -----cEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 233456789999999999999999999999999999988885
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=245.33 Aligned_cols=310 Identities=15% Similarity=0.135 Sum_probs=212.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCC-------CCCCCCCcEEEE-------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSET-------LPLEDQDRYFIQ-------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~-------~~~~~~~~~~~~-------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.... .......|+.+. ..+|.|.+++ .+|+|.|+|
T Consensus 6 ~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 84 (363)
T 1wio_A 6 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLK-IEDSDTYIC 84 (363)
T ss_dssp EETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCC-GGGCEEEEE
T ss_pred EeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCC-HHHCEEEEE
Confidence 4689999999999988899999999985321100 000123455442 5679999999 999999999
Q ss_pred EEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEE
Q psy14886 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146 (505)
Q Consensus 67 ~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i 146 (505)
.+.|.. ..+.|.|... ...+ ...+.+|+++.|.|.+.+.|.+.+.|+++|..+ ......|.|
T Consensus 85 ~~~n~~----~~~~l~V~~~----~~~~---~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~~L~i 146 (363)
T 1wio_A 85 EVEDQK----EEVQLLVFGL----TANS---DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLSV 146 (363)
T ss_dssp EETTEE----EEEEEEEEEE----EESS---CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE-------EEESSEEEE
T ss_pred EEEECC----CcEEEEEEeC----CCCC---ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-------cccceEEEE
Confidence 998763 2556666642 1222 124789999999999999999999999987543 234667999
Q ss_pred cCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecC---CCCeEEEEEeCCEEe
Q psy14886 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE---LLDVAYIWTHNGVRI 223 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~~~w~~~~~~~ 223 (505)
.++..+|+|.|+|.|.+..+.....+.+.|...|... ....+..|+.+.|.|.+.+.+ .|...+.|+++|..+
T Consensus 147 ~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~ 222 (363)
T 1wio_A 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASS 222 (363)
T ss_dssp CSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCC
T ss_pred eeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCc
Confidence 9999999999999999987776667778776555432 345677899999999887732 234577899988776
Q ss_pred cCCCCCcc-cCCeeee------------c--CCeEEEecCCCCCCEEEEEEEEec--CCcEEEEEEEEEcCCCCCCCceE
Q psy14886 224 GNMDLNEL-ETPNINI------------D--GGLLEITNASFADAGEYECVVKST--VGKISTKTTVIVEGPPGLPGGVQ 286 (505)
Q Consensus 224 ~~~~~~~~-~~~~~~~------------~--~~~l~i~~~~~~~~g~y~C~~~n~--~g~~~~~~~l~v~~~p~~p~~~~ 286 (505)
........ ....... . ...|.|..+..+|.|.|+|.|.|. .|.....+.|.|...++.+..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~ 302 (363)
T 1wio_A 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLT 302 (363)
T ss_dssp CCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEE
T ss_pred cceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEE
Confidence 54200000 0011111 2 348999999999999999999999 99988888888875443333333
Q ss_pred EEEEeCC--eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEE
Q psy14886 287 VVEVHKT--SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 364 (505)
Q Consensus 287 ~~~~~~~--~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~ 364 (505)
+...+.. .+.+.|. .....+. ......+.. +.+.+.+.|+|.|.
T Consensus 303 C~~~g~p~p~~~i~W~-------------------------~~~~~~~--------~~~~l~i~~-v~~~d~G~Y~C~a~ 348 (363)
T 1wio_A 303 CEVWGPTSPKLMLSLK-------------------------LENKEAK--------VSKREKAVW-VLNPEAGMWQCLLS 348 (363)
T ss_dssp EEEESSCCTTCCEEEE-------------------------CSSSSCS--------EEESSSEEE-ESSCCSEEEEEEEC
T ss_pred EEEccccCCCccEEEE-------------------------eCCCcee--------eeeeeeeee-eccccceeEEEEEe
Confidence 3332221 1223443 1111111 011233444 88999999999999
Q ss_pred cCC
Q psy14886 365 NEL 367 (505)
Q Consensus 365 n~~ 367 (505)
|..
T Consensus 349 ~~~ 351 (363)
T 1wio_A 349 DSG 351 (363)
T ss_dssp SSS
T ss_pred cCC
Confidence 754
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=247.10 Aligned_cols=294 Identities=17% Similarity=0.239 Sum_probs=193.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc---CC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN---SE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~---~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|++++|.|.+.+.|.+.+.|+|++ ..+. .. .......+|+... ..+|.|.+++ .+|+|.|+|.+.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~ 90 (523)
T 2rcj_C 12 GTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLE-AEDESDYYCASW 90 (523)
T ss_pred EecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCC-hhhCEEEEEEEc
Confidence 468999999999998888999999974 2111 00 0001123566543 2379999999 999999999999
Q ss_pred cccCce---EeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC--eEEEEECCEEecCCCcEEE---
Q psy14886 70 NQLKTR---YSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKI--- 138 (505)
Q Consensus 70 ~~~~~~---~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~~~~~~--- 138 (505)
|..|.. ...+.|.|.. .+|.+...+ ....+.+|+.+.|.|.+.|.|++ .+.|+++|..+..+.....
T Consensus 91 n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~--~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 168 (523)
T 2rcj_C 91 NSSDNSYVFGTGTKVTVLGQPKANPTVTLFP--PSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSK 168 (523)
T ss_pred cCCCccccccCceEEEeccCCCcCCeEEecC--CcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccc
Confidence 876532 2346777742 245444443 22345689999999999988654 9999999988764322211
Q ss_pred eeC------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE----eCCeeeeeCCCceEEEeeccEEEEEEeeec-
Q psy14886 139 FEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTE- 207 (505)
Q Consensus 139 ~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~- 207 (505)
..+ ..|.|.++..+|+|.|+|.|.|..+.....+.+.+. .+|.+. ...+...+..|+.+.|.|.+.+.
T Consensus 169 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~-~~~~~~~~~~G~~~~l~C~~~g~~ 247 (523)
T 2rcj_C 169 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVF-PLAPSSKSTSGGTAALGCLVKDYF 247 (523)
T ss_pred cCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEE-ecCCCcccccCCceEEEEEEecee
Confidence 112 248999999999999999999998876665554321 233333 22333456789999999999887
Q ss_pred CCCCeEEEEEeCCEEecCCCCCccc-CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC----CC
Q psy14886 208 ELLDVAYIWTHNGVRIGNMDLNELE-TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG----LP 282 (505)
Q Consensus 208 ~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~----~p 282 (505)
|.| +.+.|++++..+......... ........+.|.|..+..+| |.|+|.|.|..|.......+.+...|. +|
T Consensus 248 P~p-~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p 325 (523)
T 2rcj_C 248 PQP-VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPP 325 (523)
T ss_pred CCC-eEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCC
Confidence 433 478899998765321110000 00011113479999999999 999999999999876666665543332 11
Q ss_pred CceEEEEEeCCeEEEEeec
Q psy14886 283 GGVQVVEVHKTSATIQWTD 301 (505)
Q Consensus 283 ~~~~~~~~~~~~v~l~w~~ 301 (505)
. .......+..+.|.|..
T Consensus 326 ~-~~~~v~~g~~~~l~C~~ 343 (523)
T 2rcj_C 326 K-PKDTLMISRTPEVTCVV 343 (523)
T ss_pred C-chhhcccCCceEEEEEE
Confidence 1 00012346678888874
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=236.14 Aligned_cols=256 Identities=15% Similarity=0.112 Sum_probs=190.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+ .+.|+|++..+. .....+++|.|.+++ .+|+|.|+|.+.| |. ...+.
T Consensus 24 v~~G~~v~l~C~~~~----~i~W~~~~~~~~----------~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n--g~-~~~~~ 85 (290)
T 2o26_X 24 VEAGDTLSLTCIDPD----FVRWTFKTYFNE----------MVENKKNEWIQEKAE-ATRTGTYTCSNSN--GL-TSSIY 85 (290)
T ss_dssp EETTSCEEEEEECTT----EEEEEEECSSSC----------EEEECSSEEEETTCC-GGGCEEEEEEESS--SC-EEEEE
T ss_pred EcCCCcEEEEECCCC----cEEEecCCccee----------eecCCCceEEEeccC-HHhCeEEEEEeeC--Cc-cEEEE
Confidence 468999999999987 899999987661 112234899999999 9999999999998 43 56778
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCC-CeEEEE-ECCEEecCCCcEEEeeCCCEEEcCCCCCCCE-EE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWK-KDGNIIGSGGRRKIFENGNLLISPVSRDDSG-IY 157 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~i~W~-~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~y 157 (505)
|.|.. +|.+... .....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+..+.++....++.|.|.++..+|+| .|
T Consensus 86 l~V~~-~~~~~~~--~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y 161 (290)
T 2o26_X 86 VFVRD-PAKLFLV--GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCV 161 (290)
T ss_dssp EEEEC-SSCCBCC--CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEE
T ss_pred EEEeC-CCccccc--ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEE
Confidence 88885 4544433 34577889999999999986 77 899994 6888887766666666778999999999999 99
Q ss_pred EEEEEcCCCceee-eEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe----cCCCCC
Q psy14886 158 SCTATNVHGMDES-KGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLN 229 (505)
Q Consensus 158 ~C~~~~~~g~~~~-~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~----~~~~~~ 229 (505)
+|.|.|..+.... .+.|.|.. .++.+...+....+..|+.+.|.|.+.+.|.+. .+.|++++..+ ......
T Consensus 162 ~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~-~i~W~~~~~~~~~~~~~~~~~ 240 (290)
T 2o26_X 162 RCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSV-NSMWLKMNPQPQHIAQVKHNS 240 (290)
T ss_dssp EEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTC-EEEEEEESSSEEECCCEECCE
T ss_pred EEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcce-eEEEecCCCCCccceeecccc
Confidence 9999998555433 47777762 233333344555788999999999999887653 46799887653 111100
Q ss_pred cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 230 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
.............|.|..+..+|.|.|+|.|.|..|..+..+.|.|..+|
T Consensus 241 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 241 WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp EEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred cccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 00000012234689999999999999999999999999988888887654
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=242.99 Aligned_cols=263 Identities=23% Similarity=0.351 Sum_probs=205.9
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCC-CeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERD-PAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d-~G~Y~C~~~~~~~~~~~ 77 (505)
+.+|+.++|.|.+ .+.|.+.+.|++++..... ...++.. .+++|.|.+++ .+| +|.|+|.+.|..+....
T Consensus 128 v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~------~~~~~~~~~~~~l~i~~v~-~~d~~G~Y~C~a~n~~~~~~~ 200 (404)
T 3p3y_A 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT------QDKRVSQGHNGDLYFSNVM-LQDMQTDYSCNARFHFTHTIQ 200 (404)
T ss_dssp EETTSCEEECCCCCCCSSCCEEEEECTTSCBCC------CCSSEEECTTSCEEESSCC-SGGGSSCBEEEEECTTTCCEE
T ss_pred EccCCcEEEEeCCCCCCCCCeEEEeCCCccccC------CCCcEEEcCCCcEEEEeee-eccCCcceEEEEEecccccee
Confidence 3589999999999 6788999999998754331 2344544 46789999999 999 59999999988765322
Q ss_pred ---eEEEEEEec------CCCccCCC-CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEc
Q psy14886 78 ---SAQLRVLTL------KPSFKKRP-LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147 (505)
Q Consensus 78 ---~~~l~v~~~------~p~~~~~~-~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~ 147 (505)
.+.+.|... +|.+.... ......+.+|+.+.|.|.+.+.|.+.+.|+++|..+..........++.|.|.
T Consensus 201 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~ 280 (404)
T 3p3y_A 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280 (404)
T ss_dssp ECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEES
T ss_pred ccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEc
Confidence 355566531 23222221 12345688999999999999999999999999998876655444556789999
Q ss_pred CCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~ 227 (505)
++..+|+|.|+|.|.|..|.....+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+....
T Consensus 281 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~~ 357 (404)
T 3p3y_A 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD-EPKNLILAPGEDGRLVCRANGNPKP--TVQWMVNGEPLQSAP 357 (404)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEE-CCCCEEECTTCCEEEECEEEEESCC--EEEEEETTEEGGGSC
T ss_pred cCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeec-cCCcceeecCCcEEEEEEccccCCC--ceEEEECCEecCCCC
Confidence 9999999999999999999988889999987776554 4556778899999999999998766 567999999886532
Q ss_pred CCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 228 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
. .......+..|.|..+..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus 358 ~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 358 P----NPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp C----CTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred C----CceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 1 123334567899999999999999999999999999999888754
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=242.01 Aligned_cols=274 Identities=19% Similarity=0.229 Sum_probs=170.1
Q ss_pred CCCCCceEEEEEEeccC-----------CCeEEEEECCEECcCCC-CC-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP-----------DVTYSWFRNGELLNSET-LP-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----------~~~~~W~~~~~~l~~~~-~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|.+|+.++|.|.+.+.| .+.+.|+|++....... +. .....++...+++|.|.+++ .+|+|.|+|.
T Consensus 19 v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~ 97 (349)
T 4dep_C 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTL-LNDTGNYTCM 97 (349)
T ss_dssp EETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCC-GGGCEEEEEE
T ss_pred EecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCC-hhhCEEEEEE
Confidence 45899999999998755 49999999884211000 00 01345677788999999999 9999999999
Q ss_pred EEcccCceEeeEEEEEEecCCCccCCC--CCceEEeeCCCeEEEEeec-----CCCCCCeEEEEECCEEecCCCcEEEee
Q psy14886 68 AKNQLKTRYSSAQLRVLTLKPSFKKRP--LESETYAGEGGNVTIFCNP-----EAAPKPKFVWKKDGNIIGSGGRRKIFE 140 (505)
Q Consensus 68 ~~~~~~~~~~~~~l~v~~~~p~~~~~~--~~~~~~v~~g~~v~l~C~~-----~~~p~~~i~W~~~g~~~~~~~~~~~~~ 140 (505)
+.|..+.....+.|.|.. ++...... .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++ ...
T Consensus 98 a~n~~~~~~~~~~l~V~~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~-~~~ 175 (349)
T 4dep_C 98 LRNTTYCSKVAFPLEVVQ-KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV-IPE 175 (349)
T ss_dssp EECSSCEEEEEEEEEEEC-CCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSE-EEE
T ss_pred EecCCceEEEEEEEEEec-CCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccce-eec
Confidence 999888888888899886 33322221 1234578899999999985 67789999999999988654332 233
Q ss_pred CCCEEEcCCCCCCCEEEEEEEEcCC-Cce---eeeEEEEEEeC-----CeeeeeCCC-c-eEEEeeccEEEEEEeeec--
Q psy14886 141 NGNLLISPVSRDDSGIYSCTATNVH-GMD---ESKGRLIVLHG-----PSYYEQLPP-K-ITIAAHRNLQLRCSAHTE-- 207 (505)
Q Consensus 141 ~~~l~i~~v~~~d~G~y~C~~~~~~-g~~---~~~~~l~v~~~-----p~~~~~~~~-~-~~~~~g~~~~l~C~~~~~-- 207 (505)
...|.|.++..+|+|.|+|.|.|.. |.. ...+.|.|..+ ++.+..... . ..+..|+.+.|.|.+.+.
T Consensus 176 ~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~ 255 (349)
T 4dep_C 176 GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFL 255 (349)
T ss_dssp TTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCC
T ss_pred CCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccC
Confidence 4569999999999999999999987 443 45566777653 232222222 1 267889999999999964
Q ss_pred CCCCeEEEEEeCCEEecCC--CCCcccC-----CeeeecCCeEEEecCCCCCC-EEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 208 ELLDVAYIWTHNGVRIGNM--DLNELET-----PNINIDGGLLEITNASFADA-GEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 208 ~~~~~~~~w~~~~~~~~~~--~~~~~~~-----~~~~~~~~~l~i~~~~~~~~-g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
..|...+.|++++..+... ....... .........|.|..+..+|. |.|+|.|.|..|.....+.|.|..
T Consensus 256 g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp TTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred CCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 1234577899998877541 1110000 00011234588999999999 999999999999999988888864
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=234.81 Aligned_cols=256 Identities=19% Similarity=0.291 Sum_probs=191.4
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|++++|.|... +.|.+.++|+|++..+. ...++.+. + .+|.|.+++ .+|+|.|+|.+.|..|..
T Consensus 13 v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~~~n~~g~~ 84 (312)
T 2y23_A 13 VDDDGVISLNFECDKMTPKSEFSWSKDYVSTE-------DSPRLEVESKGNKTKMTFKDLG-MDDLGIYSCDVTDTDGIA 84 (312)
T ss_dssp ECTTCCEEEEEECSSCCTTCCEEEEETTEECT-------TCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEESSSCCCC
T ss_pred EecCCeEEEEEEEeCCCCCcEEEEEECCEECC-------CCCCEEEEEeCCEEEEEECcCC-ccCCEEEEEEEEeCCCcE
Confidence 46899999999986 47889999999999987 34566553 2 589999999 999999999999987754
Q ss_pred EeeEEEEEEe-----------cCCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCCC
Q psy14886 76 YSSAQLRVLT-----------LKPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGN 143 (505)
Q Consensus 76 ~~~~~l~v~~-----------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~~ 143 (505)
. +..+.|.. .+|.+...+ .....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..+..
T Consensus 85 ~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~ 162 (312)
T 2y23_A 85 S-SYLIDEEELKRLLALSHEHKFPTVPVKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN 162 (312)
T ss_dssp E-EEEECHHHHHHHHHHHHHHHSCBCCEEE-EEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETT
T ss_pred E-EEEEEEeeeeeeecccccCCCCcccccc-CCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccC
Confidence 3 44555432 045444432 1267789999999999998 78999999999999998776666654432
Q ss_pred -----EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE---------------------eCCeeeeeCCCceEEEeecc
Q psy14886 144 -----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---------------------HGPSYYEQLPPKITIAAHRN 197 (505)
Q Consensus 144 -----l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~g~~ 197 (505)
|.|.++..+|+|.|+|.+.+..+.... .+.+. .+|.+... ....+..|+.
T Consensus 163 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~v~~G~~ 238 (312)
T 2y23_A 163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS--TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY--LSWEVTGECN 238 (312)
T ss_dssp TTEEEEEESCCCGGGCEEEEEEEESSSCEEEE--EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE--EEEEEETTTE
T ss_pred CCEEEEEEccCCcccCEeEEEEEEeCCceEEE--EEEEcchhhhhhcccccccccchhhccCCceeec--ceEEEeCCCE
Confidence 999999999999999999865443333 33321 12333321 1356789999
Q ss_pred EEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 198 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
+.|.|.+.+.|.+ ..+.|++++..+..... .........|.|.++..+|.|.|+|.|.|..|.....+.|.+.
T Consensus 239 ~~l~C~~~~~p~~-~~v~W~~~g~~~~~~~~-----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 239 VLLKCKVANIKKE-THIVWYKDEREISVDEK-----HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEEEESCCSS-CEEEEEETTEEEEEECC-----C----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEEEcCCCCC-CEEEEeeCCEECCCCCc-----EEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 9999999998765 25779999998864221 1111223589999999999999999999999999988887653
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-29 Score=246.30 Aligned_cols=356 Identities=18% Similarity=0.219 Sum_probs=230.4
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEECcCC-----C-CCCCCCCcEEE--ECC-----eEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSE-----T-LPLEDQDRYFI--QDN-----VLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~l~~~-----~-~~~~~~~~~~~--~~~-----~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|.+.+. |.+.+.|+|++..+... . ......+++.+ .+. +|.|.+++ .+|+|.|+|
T Consensus 124 v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 202 (585)
T 2ocw_A 124 VDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR-LSDAGQYLC 202 (585)
T ss_pred EEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCC-hhHCeEEEE
Confidence 4689999999999864 46789999987542110 0 00001244443 222 79999999 999999999
Q ss_pred EEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-C-CeEEEE-ECCE----Eec--------
Q psy14886 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-K-PKFVWK-KDGN----IIG-------- 131 (505)
Q Consensus 67 ~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-~-~~i~W~-~~g~----~~~-------- 131 (505)
.+.|..+.....+.|.|...+| ..+.+.+|+.+.|.|.+.+.+ . +.+.|+ ++|. .+.
T Consensus 203 ~a~n~~g~~~~~~~l~V~~~~p--------~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~ 274 (585)
T 2ocw_A 203 QAGDDSNSNKKNADLQVLKPEP--------ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPA 274 (585)
T ss_pred EeccCCccccceEEEEEccCCC--------ceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcc
Confidence 9999888887788888875333 234578999999999974332 2 688997 7873 111
Q ss_pred CCCcEEEee---CC--CEEEcCCCCCCCEEEEEEEEcCCCcee-----eeEEEEEEeCCeeeeeCCCceEEEeeccEEEE
Q psy14886 132 SGGRRKIFE---NG--NLLISPVSRDDSGIYSCTATNVHGMDE-----SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 201 (505)
Q Consensus 132 ~~~~~~~~~---~~--~l~i~~v~~~d~G~y~C~~~~~~g~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~ 201 (505)
...++.+.. ++ .|.|.++..+|+|.|+|.|.|. |... ..+.|.|..+|.+.. .+....+..|+.+.|.
T Consensus 275 ~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~G~~v~l~ 352 (585)
T 2ocw_A 275 FEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPR-SPTVVKGVAGSSVAVL 352 (585)
T ss_pred cCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEeccccccc-CCcceEEEeCCcEEEE
Confidence 123333332 34 6999999999999999999995 4433 667888877766543 3566778899999999
Q ss_pred EEeeecCCCCeEE--EEEe--CCE--EecCCCCC--cccCCeeee----cCC--eEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 202 CSAHTEELLDVAY--IWTH--NGV--RIGNMDLN--ELETPNINI----DGG--LLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 202 C~~~~~~~~~~~~--~w~~--~~~--~~~~~~~~--~~~~~~~~~----~~~--~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
|.+.+.|.+.+.+ .|++ +|. .+...... ......... .++ .|.|..+..+|.|.|+|.| |..|..
T Consensus 353 C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~ 431 (585)
T 2ocw_A 353 CPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLW 431 (585)
T ss_pred EecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCcc
Confidence 9999988887654 7998 776 43221000 000011111 123 3889999999999999999 888988
Q ss_pred EEEEEEEEcCC-CCCCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeee--cCc-
Q psy14886 268 STKTTVIVEGP-PGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY--TGR- 342 (505)
Q Consensus 268 ~~~~~l~v~~~-p~~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~--~~~- 342 (505)
...+.|.|... |............+..+.|.|..... .+.+...+.|. ..+...-... ........... .+.
T Consensus 432 ~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~--k~g~~~~~~~-~~~~~~~~~~~~~~~~~ 508 (585)
T 2ocw_A 432 RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN--NTGCQALPSQ-DEGPSKAFVNCDENSRL 508 (585)
T ss_pred ceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEe--ecCceeeecc-CCCCCcceEEecCcccE
Confidence 88888888653 33222233445677889999986422 13333333332 2211100000 00000000010 011
Q ss_pred eeeEEeeeccCCceeEEEEEEEcCCCcCCC
Q psy14886 343 KEASIENVLVPWSTYEFKVIAGNELGYGEP 372 (505)
Q Consensus 343 ~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~ 372 (505)
..+.+.+ +...+.+.|+|.|.|..|.+..
T Consensus 509 ~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~~ 537 (585)
T 2ocw_A 509 VSLTLNL-VTRADEGWYWCGVKQGHFYGET 537 (585)
T ss_pred EEEEECC-CCcccCeEEEEEeEeCCCccEE
Confidence 2444444 9999999999999999987653
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=229.61 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=198.9
Q ss_pred CceEEEeeccEEEEEEeeec--CC-CCeEEEEEeCCEEecCCCCCcccCCeeeecC---CeEEEecCCCCCCEEEEEEEE
Q psy14886 188 PKITIAAHRNLQLRCSAHTE--EL-LDVAYIWTHNGVRIGNMDLNELETPNINIDG---GLLEITNASFADAGEYECVVK 261 (505)
Q Consensus 188 ~~~~~~~g~~~~l~C~~~~~--~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~~g~y~C~~~ 261 (505)
....+..|++++|.|.+.+. +. +...+.|.++|..+..... .....+ +.|.|.++...|.|.|.|.+.
T Consensus 8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~------~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~ 81 (313)
T 2d9q_B 8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQ------QRLSDGTQESIITLPHLNHTQAFLSCSLNW 81 (313)
T ss_dssp SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEE------CCCSSSCCCEEEEESCCCSSEEEEEEEEES
T ss_pred CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccce------EEEecCeEEEEEEEeccCCCccceEEeeec
Confidence 45567899999999999986 21 2345669999876643210 011111 579999999999999999987
Q ss_pred ecCCcEEEEEEEEEcCCCCCCCceEEEEEe-CCeEEEEeecCCCCCCCCceEEEEEEeCCC------CCeEEeeeccccc
Q psy14886 262 STVGKISTKTTVIVEGPPGLPGGVQVVEVH-KTSATIQWTDGATNGRPITHYKIIARTNWN------STWFNVSEHVIGK 334 (505)
Q Consensus 262 n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~-~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~------~~w~~~~~~~~~~ 334 (505)
+..+.....+.|.+..+|.+|.++.+.... .++++++|.++.+.+.+ ..|.|+|+.... ..|..+...
T Consensus 82 ~~~~~~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~-~~Y~l~~~~~~~~~~~~~~~~~~~~~~---- 156 (313)
T 2d9q_B 82 GNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLP-TSFTLKSFKSRGNCQTQGDSILDCVPK---- 156 (313)
T ss_dssp SSSEEEEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCTTSCSCCCCEEEECCC----
T ss_pred CCCceeEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCc-eeEEEEEEecCCCcccCCcccccCCCC----
Confidence 655555566788888999999999988774 68999999998876554 569999986542 234333211
Q ss_pred eeeeecCceeeEEe-eeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc------ccccEEEEE
Q psy14886 335 EVDRYTGRKEASIE-NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG------KIGDLSISW 407 (505)
Q Consensus 335 ~~~~~~~~~~~~~~-~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~------~~~~v~l~W 407 (505)
.+.....+. .+|.+++.|.|+|.|.|..|.+. +... .+.+....++.||.++.+... ..+++.|+|
T Consensus 157 -----~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~-s~~~-~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W 229 (313)
T 2d9q_B 157 -----DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSM-SPQL-CLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW 229 (313)
T ss_dssp -----TTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEE-CCCE-EECGGGGEECCCCEEEECCC-------CCSCEEEEE
T ss_pred -----CCCcEEEECccccccceeEEEEEEEECCCCCcc-CccE-EEehhheeccCcCceeEEEEecccccCCCCeEEEEE
Confidence 112222332 24999999999999999999974 3222 355555567789999988754 468999999
Q ss_pred EeCCccccCCCCceEEEEEE-EcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCC---CCceEEEe
Q psy14886 408 EPLPREKQNAPNIYYKIFWR-KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP---ESEVVTIW 483 (505)
Q Consensus 408 ~~~~~~~~~~~i~~Y~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~---~s~~~~~~ 483 (505)
++|+ ..+..+++|+|+|+ ..+...|....... .....+.|.+|.|++.|.|+|+|.|..|.|+ +|+.+.+.
T Consensus 230 ~~p~--~~~~~~l~Y~v~y~~~~~~~~w~~~~~~~---~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~ 304 (313)
T 2d9q_B 230 EPWQ--PGLHINQKCELRHKPQRGEASWALVGPLP---LEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304 (313)
T ss_dssp ECCG--GGTTSCEEEEEEEEESSSCCCCEEEEEEC---SCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEEC
T ss_pred CCCC--CCCceeEEEEEEEccCCCCCCcEEccccc---CcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCcccee
Confidence 9842 34444689999999 66777898654332 1346789999999999999999999988886 55666777
Q ss_pred ecc
Q psy14886 484 HDP 486 (505)
Q Consensus 484 t~p 486 (505)
|..
T Consensus 305 T~~ 307 (313)
T 2d9q_B 305 TTE 307 (313)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=239.42 Aligned_cols=264 Identities=19% Similarity=0.290 Sum_probs=195.8
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCe---EEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPA---MYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G---~Y~C~~~~~~~~~ 75 (505)
+.+|+.++|.|.+ .+.|.+.+.|+|++..............++.. .+++|.|.+++ .+|+| .|+|.+.|..+..
T Consensus 112 ~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~~~~Y~C~a~n~~~~~ 190 (395)
T 1bih_A 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT-KEDVSDIYKYVCTAKNAAVDE 190 (395)
T ss_dssp CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEEC-GGGCCSSEEEEEEEECTTCSS
T ss_pred eeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEe-eccCCCceEEEEEEEecccce
Confidence 4689999999996 78899999999986211100000001345544 46789999999 99999 9999999988775
Q ss_pred EeeEEEEEEe-c-CCCcc----CCC--CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe----eCC-
Q psy14886 76 YSSAQLRVLT-L-KPSFK----KRP--LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENG- 142 (505)
Q Consensus 76 ~~~~~l~v~~-~-~p~~~----~~~--~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----~~~- 142 (505)
.......... . .+... ..+ ......+.+|+.+.|.|.+.+.|.+.+.|+++|..+.......+. ..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 270 (395)
T 1bih_A 191 EVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270 (395)
T ss_dssp CEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTS
T ss_pred EEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCc
Confidence 4433222211 0 00000 000 123467899999999999999999999999999988653222221 112
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCE
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 221 (505)
.|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+. +.|+++|.
T Consensus 271 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~ 348 (395)
T 1bih_A 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAK 348 (395)
T ss_dssp EEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCC--CEEEETTE
T ss_pred eEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCe--eEEEECCE
Confidence 5999999999999999999999998766 78899988777665433336788999999999999988775 56999998
Q ss_pred EecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
.+... .....++.|.|..+..+|.|.|+|.|.|..|.....+.|.|
T Consensus 349 ~~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 349 PLSGG--------RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp ECCSS--------SEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ECCCC--------ceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 87652 23334569999999999999999999999999988888876
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=231.65 Aligned_cols=261 Identities=18% Similarity=0.183 Sum_probs=190.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+ .+.|++++...... .....+++|.|.+++ .+|+|.|+|.+.+..+.....+.
T Consensus 16 v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~--------~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~ 82 (289)
T 3ejj_X 16 VEPGETVTLRCVSNG----SVEWDGPISPYWTL--------DPESPGSTLTTRNAT-FKNTGTYRCTELEDPMAGSTTIH 82 (289)
T ss_dssp ECTTCCEEEEEECSS----CCEEECSCSSSSEE--------CCCSSCCEEEESSCC-GGGCEEEEEECCC-----CEEEE
T ss_pred ECCCCCEEEEEEeCC----cEEEccCCCceEEE--------eccCCccEEEEeeec-cccCEEEEEEEeccCCcceeEEE
Confidence 468999999999976 49999876432100 011134789999999 99999999999988777777788
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCe-EEEEE-CCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK-FVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-i~W~~-~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
|.|...+..+...+ ....+.+|+++.|.|.+.+.+.+. +.|++ ++..+....+.....++.|.|.++..+|+|.|+
T Consensus 83 l~V~~~~~~~~~~~--~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 160 (289)
T 3ejj_X 83 LYVKDPAHSWNLLA--QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYV 160 (289)
T ss_dssp EEECCSSCSEEESC--SEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEE
T ss_pred EEEeCCCcceeccc--ceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEE
Confidence 88886333233333 567789999999999999876654 99986 777777777777777788999999999999999
Q ss_pred EEEE-cCCCceeeeEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeee-cCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 159 CTAT-NVHGMDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 159 C~~~-~~~g~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
|.+. +..+.....+.|.|.. .++.+...+....+..|+.+.|.|.+.+ .|. ..+.|++++..+.........
T Consensus 161 C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~i~W~~~~~~~~~~~~~~~~- 237 (289)
T 3ejj_X 161 CKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG--FNVILKRGDTKLEIPLNSDFQ- 237 (289)
T ss_dssp EEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC--CEEEEEETTEECCCCEEEEEC-
T ss_pred EEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc--eEEEEEECCEEeeccCCcccc-
Confidence 9999 5445555668888873 2333333345556678999999999987 344 467799999887543211100
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
.........|.|..+..+|.|.|+|.|.|..|....++.|.+...+
T Consensus 238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp SSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred cceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 1112234689999999999999999999999999999999886554
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=239.52 Aligned_cols=257 Identities=13% Similarity=0.152 Sum_probs=173.9
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQL 81 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l 81 (505)
.|+.+.|.|.+.|.|.+.|+|+|++..+..... .....+......| + ..|+|.|+|.|.|..|.... .+.|
T Consensus 153 ~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~--~~~~~~~~~~~~l-----~-~~d~G~Y~C~A~N~~G~~~~~~~~l 224 (423)
T 3qs7_E 153 MENQDALVCISESVPEPIVEWVLCDSQGESCKE--ESPAVVKKEEKVL-----H-ELFGTDIRCCARNELGRECTRLFTI 224 (423)
T ss_dssp CSSSSCEEEEEEESSCCEEEEEEC---------------CEEECCSEE-----C-CCCSSCEEEEEECSSCEEEEECEEE
T ss_pred cCCceEEEEEEeeecCCeEEEEECCCCCccccc--cccccccccceEE-----e-cccCeEEEEEEEcCCCCcceeeEEE
Confidence 578889999999999999999999876532100 0011111111222 5 78999999999999887654 3556
Q ss_pred EEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcE---------EEeeCCCEEEcCCCC
Q psy14886 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRR---------KIFENGNLLISPVSR 151 (505)
Q Consensus 82 ~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~---------~~~~~~~l~i~~v~~ 151 (505)
.|.. +|.+ . .....+.+|+.+.|.|.+.| .|.+.+.|+++|..+...... .....++|.|.++..
T Consensus 225 ~V~~-~p~~--~--~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 299 (423)
T 3qs7_E 225 DLNQ-TPQT--T--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299 (423)
T ss_dssp ESSS-CCCS--S--TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCT
T ss_pred EEec-CCcc--C--CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCH
Confidence 6653 3433 2 23567899999999999998 577899999999877543211 112234699999999
Q ss_pred CCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCC-CceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 230 (505)
+|+|.|+|.|.|. ....+.|.|..+|.+..... ....+..|+.+.|.|.+.+.|.| .+.|+++|..+.....
T Consensus 300 ~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~-- 372 (423)
T 3qs7_E 300 NDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI--RCTWTFSRKSFPCEQK-- 372 (423)
T ss_dssp TTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC--EEEEEETTEEEECBCC--
T ss_pred HHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC--eEEEEECCEECCCccc--
Confidence 9999999999987 66678888887776543321 34556788999999999999876 5679999999865320
Q ss_pred ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc
Q psy14886 231 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284 (505)
Q Consensus 231 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~ 284 (505)
.......+.......+|+|.|+|.|.|..|..+.++.|.|...|.+|..
T Consensus 373 -----~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~ 421 (423)
T 3qs7_E 373 -----GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH 421 (423)
T ss_dssp -----BCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred -----cccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence 0001112223556678999999999999999999999999999887754
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=231.74 Aligned_cols=264 Identities=18% Similarity=0.188 Sum_probs=189.1
Q ss_pred CCCCceEEEEEEeccCCC-----eEEEEECCEECcCCCC------CCCCCCcEEE---------ECCeEEEEcCCCCCCC
Q psy14886 2 DNQADLTWTCEAFGVPDV-----TYSWFRNGELLNSETL------PLEDQDRYFI---------QDNVLTIRYLNPERDP 61 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~-----~~~W~~~~~~l~~~~~------~~~~~~~~~~---------~~~~L~i~~~~~~~d~ 61 (505)
..|++++|.|.+.+.+.+ .+.|+|++........ ......++.. .+.+|.|.+++ .+|+
T Consensus 13 ~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~-~~D~ 91 (313)
T 4fqp_A 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR-VEDE 91 (313)
T ss_dssp BTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCC-GGGC
T ss_pred ecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCC-hhhC
Confidence 479999999999875533 5999998764321100 0012233332 23579999999 9999
Q ss_pred eEEEEEEEc-ccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEe
Q psy14886 62 AMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIF 139 (505)
Q Consensus 62 G~Y~C~~~~-~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~ 139 (505)
|.|+|.+.+ ..+.....+.|.+.. +|.+.... ....+..++.+.+.|.+. +.|.+.+.|++++..+.........
T Consensus 92 G~Y~C~v~~~~~~~~~~~~~l~v~~-~P~~~~~~--~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~ 168 (313)
T 4fqp_A 92 GNYTCLFVTFPQGSRSVDIWLRVLA-KPQNTAEV--QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF 168 (313)
T ss_dssp EEEEEEEECSSSCEEEEEEEECCBB-CCEEEEEE--CCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECS
T ss_pred EEEEEEEeeccCcceeeeeeeeecc-CCcceecc--cceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeee
Confidence 999998864 445555566676664 45443332 223467788899999864 6788999999998766433222222
Q ss_pred eCC------CEEEcCCCCCCCEEEEEEEEcCCCceee--eEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCC
Q psy14886 140 ENG------NLLISPVSRDDSGIYSCTATNVHGMDES--KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211 (505)
Q Consensus 140 ~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~~--~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 211 (505)
.++ .|.|.++...|+|.|+|.|.|..+.... .+.|.|..+|.+.........+..|+.+.|.|.+.+.|.|
T Consensus 169 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p- 247 (313)
T 4fqp_A 169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEP- 247 (313)
T ss_dssp STTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCC-
T ss_pred cccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCC-
Confidence 222 3888899999999999999997765544 3556666666655554555566778899999999998876
Q ss_pred eEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 212 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 212 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
..+.|++++..+... ....+..|.|..+..+|.|.|+|.|.|..|..+..+.|.|..+|
T Consensus 248 ~~v~W~~~~~~l~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 248 TGYNWSTTMGPLPPF---------AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp CEEEEEETTBSCCTT---------EEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred cEEEEEECCEECCCc---------eEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 356799998776432 22346789999999999999999999999999999999998654
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=241.91 Aligned_cols=268 Identities=16% Similarity=0.243 Sum_probs=182.2
Q ss_pred CCCCceEEEEEEeccCC--CeEEEEECCEECcCCCCC---C-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEAFGVPD--VTYSWFRNGELLNSETLP---L-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~---~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|+.++|.|.+.+.|+ +.|+|+|||.++...... . ...+.+. ..+.|.|.+++ .+|+|.|+|.|.|..+..
T Consensus 127 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~-~~d~G~Y~C~a~n~~~~~ 204 (523)
T 2rcj_C 127 LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYA-ASSYLSLTPEQ-WKSHRSYSCQVTHEGSTV 204 (523)
T ss_pred cCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEE-EEEEEEEechh-cCCCceEEEEEEecCccc
Confidence 46899999999998764 499999999888632110 0 0111111 12479999999 999999999999987765
Q ss_pred EeeEEEEEE---ecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCCC-cEEEee------CCC
Q psy14886 76 YSSAQLRVL---TLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGG-RRKIFE------NGN 143 (505)
Q Consensus 76 ~~~~~l~v~---~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~~-~~~~~~------~~~ 143 (505)
...+.+.+. ..+|.+.... +...+.+|+.+.|.|.+.|. |.+ .|.|+++|..+.... ...... ...
T Consensus 205 ~~~~~~~~~~~~~~~P~v~~~~--~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~ 282 (523)
T 2rcj_C 205 EKTVAPTECSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSV 282 (523)
T ss_pred ccceeeeecCCCCcCCEEEecC--CCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEE
Confidence 555443321 1234333222 22346799999999999887 777 899999997653211 011111 236
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceE-EEeeccEEEEEEeeecCCC--CeEEEEEeCC
Q psy14886 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT-IAAHRNLQLRCSAHTEELL--DVAYIWTHNG 220 (505)
Q Consensus 144 l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~--~~~~~w~~~~ 220 (505)
|.|.++..+| |.|+|.|.|..|.......+.+...|.+....+.... +..|+.+.|.|.+.+.+++ .+.+.|+++|
T Consensus 283 L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g 361 (523)
T 2rcj_C 283 VTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDG 361 (523)
T ss_pred EEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECC
Confidence 9999999999 9999999999998777777766555654443333333 6789999999999986533 4688899999
Q ss_pred EEecCCCCCc--ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEE
Q psy14886 221 VRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274 (505)
Q Consensus 221 ~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~ 274 (505)
..+....... ..........+.|.|..+..+|.|.|+|.|.|..+.......+.
T Consensus 362 ~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 362 VQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred eEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence 8886532110 00000111224578888888999999999999877755444444
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=237.39 Aligned_cols=256 Identities=25% Similarity=0.423 Sum_probs=197.9
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+.+|++++|.|.+. +.|.+.+.|+|++.++... ...+... .+++|.|.+++ .+|+|.|+|.+.|..+....
T Consensus 113 v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~g~~~~ 186 (382)
T 1cs6_A 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP-----ADGRRFVSQTTGNLYIAKTE-ASDLGNYSCFATSHIDFITK 186 (382)
T ss_dssp EETTSCEEECCCCCSEESCCEEEEEESSTTCBCC-----CCSSEEECTTTCCEEESSCC-GGGCEEEEEEEEEEETTEEE
T ss_pred EecCCcEEEEeCCCCCCCCcEEEEEECCCccccc-----cCceEEEecCceEEEEEeeC-cccCeeEEEEEEEccccccc
Confidence 35799999999964 5688999999998765321 2233333 34789999999 99999999999987643222
Q ss_pred -----eEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEc
Q psy14886 78 -----SAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147 (505)
Q Consensus 78 -----~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~ 147 (505)
.+.+.|.. .+|.+.... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .......|.|.
T Consensus 187 ~~~s~~~~l~v~~~~~~~~~P~~~~~~-~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---~~~~~~~L~i~ 262 (382)
T 1cs6_A 187 SVFSKFSQLSLAAEDARQYAPSIKAKF-PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQ 262 (382)
T ss_dssp EEECCCEEEEEESCCCCCEEEEEEECC-CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---CSBSSSEEEEC
T ss_pred eeEccceeeccchhhcccCCCceeccC-CCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE---EecCCcEEEEc
Confidence 23444432 133333322 24567899999999999999999999999988765431 11234579999
Q ss_pred CCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~ 227 (505)
++..+|.|.|+|.|.|..|.....+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|+++|..+...
T Consensus 263 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~g~~~~~~- 338 (382)
T 1cs6_A 263 NVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV-ITDTEADIGSDLRWSCVASGKPRP--AVRWLRDGQPLASQ- 338 (382)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC-CCCEEEETTCCEEEECEEEEESCC--EEEEEETTEECCCC-
T ss_pred cCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccC-CCccEEcCCCeEEEEEEeeeecCC--EEEEEECCEECCCC-
Confidence 99999999999999999999888889999877776543 456778899999999999998876 46799999888653
Q ss_pred CCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 228 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
......++.|.|..+..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 339 ------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 339 ------NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp ------SSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ------ceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 2333456789999999999999999999999999999888875
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=220.74 Aligned_cols=230 Identities=16% Similarity=0.246 Sum_probs=180.8
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|+.++|.|.+.+.|.+ .++|+|++..+.. .+.+|.|.+++ .+|+|.|+|.+.+..+. ..+
T Consensus 13 v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~-------------~~~~l~i~~~~-~~d~G~Y~C~~~~~~~s--~~~ 76 (262)
T 3rjd_A 13 VFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------------STPSYRITSAS-VNDSGEYRCQRGLSGRS--DPI 76 (262)
T ss_dssp EETTCCEEEEEECSSCCCTTCEEEEETTEECSC-------------CSSEEEESSCC-GGGCEEEEEEESSSCCC--CCE
T ss_pred eeCCCeEEEEEECCCCCCCceEEEEECCEEeec-------------cCCeEEEecCC-cccCeEEEEEEecCCcc--ccE
Confidence 4589999999999888776 9999999998863 15789999999 99999999999875543 356
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
.+.|.. ++ +...+ ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ......|.|.++..+|+|.|+
T Consensus 77 ~l~v~~-~~-~~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~-----~~~~~~l~i~~~~~~d~G~Y~ 147 (262)
T 3rjd_A 77 QLEIHR-GW-LLLQV--SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF-----FHWNSNLTILKTNISHNGTYH 147 (262)
T ss_dssp EEEEEC-SS-EEEEE--SCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGGGCEEEE
T ss_pred EEEEec-cc-eEecC--CCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc-----cCCCCeEEEEECChhhCEEEE
Confidence 666664 22 22222 23457899999999998 6778889999999988742 123578999999999999999
Q ss_pred EEEEcCCCceeeeEEEEEEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCC-CC--eEEEEEeCCEEecCCCCCcccC
Q psy14886 159 CTATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LD--VAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 159 C~~~~~~g~~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
|.+.|..+.....+.|.|... ++.+... ....+..|+.+.|.|.+.+.|. +. +.+.|++++..+...
T Consensus 148 C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~-~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~------- 219 (262)
T 3rjd_A 148 CSGMGKHRYTSAGISVTVKELFPAPVLNAS-VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR------- 219 (262)
T ss_dssp EEEESSSEEEEECEEEEEECSSCCCEEEES-SCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE-------
T ss_pred EEEeCCCCccccceEEEeccCCCCCeEeec-CceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc-------
Confidence 999999887777788888763 3333332 3556889999999999999875 44 456899999877531
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
.....|.|..+..+|.|.|+|.|.|..|..
T Consensus 220 ----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 220 ----NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp ----ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred ----CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 235689999999999999999999999974
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=237.99 Aligned_cols=268 Identities=16% Similarity=0.213 Sum_probs=188.3
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcCC----------CCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEE
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNSE----------TLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~----------~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~ 65 (505)
.+|++++|.|.+.+ .+.+.|+|+|++...... .......+|+.. .+.+|.|.+++ .+|+|.|+
T Consensus 12 ~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~~D~G~Y~ 90 (308)
T 4fom_A 12 VWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIG-FSDSGKYI 90 (308)
T ss_dssp ETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCC-GGGCEEEE
T ss_pred EcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCC-HHHCEEEE
Confidence 47999999999865 345679999965322110 000112344443 23579999999 99999999
Q ss_pred EEEEcc-cCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcE----EEe
Q psy14886 66 CRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRR----KIF 139 (505)
Q Consensus 66 C~~~~~-~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~----~~~ 139 (505)
|.|.+. .+.....+.+.+.. .|.+.....+.......|+.+.|.|.+ .+.|.+.+.|++++..+...... ...
T Consensus 91 C~a~n~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~ 169 (308)
T 4fom_A 91 CKAVTFPLGNAQSSTTVTVLV-EPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETAT 169 (308)
T ss_dssp EEEEETTTEEEEEEEEEEEEB-CCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEE
T ss_pred EEEeeCCCcceeeeeEEEeee-ccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeeccc
Confidence 999875 44555566677765 333322222344456678999999975 67899999999998776432110 011
Q ss_pred eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee--EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEE
Q psy14886 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDESK--GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 217 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~ 217 (505)
....|.|..+...|+|.|+|.|.|..+..... +.|.|..+|.+.........+..|+.+.|.|.+.+.|.| ..+.|+
T Consensus 170 ~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~~v~W~ 248 (308)
T 4fom_A 170 IISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP-FKSVWS 248 (308)
T ss_dssp EEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCE-EEEECC
T ss_pred ccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCC-cEEEEE
Confidence 12358999999999999999999987665443 555666666655554555667778999999999998765 357799
Q ss_pred eCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC
Q psy14886 218 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280 (505)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~ 280 (505)
+++..+.... ....+..+.|..+..+|+|.|+|.|.|..|..+..+.|.|..+|-
T Consensus 249 k~~~~~~~~~--------~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 249 RLDGQWPDGL--------LASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp BSSSCCCSSC--------BCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred ECCeECCCcE--------EEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 9887664421 122334556778899999999999999999999999999988774
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=233.48 Aligned_cols=254 Identities=22% Similarity=0.326 Sum_probs=193.1
Q ss_pred CCCCCceEEEEEEeccC---CCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCC-eEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVP---DVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDP-AMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p---~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~-G~Y~C~~~~~~~~~ 75 (505)
+.+|+.++|.|.+.+.+ .+.+.|+|++..+..... ....++.. .+++|.|.+++ .+|+ |.|+|.+.|..+..
T Consensus 115 v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~-~~d~~G~Y~C~~~n~~~~~ 191 (388)
T 2v5m_A 115 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA--EYDGKYLVLPSGELHIREVG-PEDGYKSYQCRTKHRLTGE 191 (388)
T ss_dssp EETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSS--CBTTTEEECTTSCEEESSCC-GGGGGCCEEEEEEETTTCC
T ss_pred eecCCcEEEEEECcCCCCCCcceEEEEeCCCccccccc--CCCCcEEEccCCcEEEecCC-ccccCeeEEEEeccCCCCc
Confidence 35799999999998754 378999999876642211 11344544 46789999999 9999 99999999875432
Q ss_pred E-ee---EEEEEEec----CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEE------ecCCCcEEEeeC
Q psy14886 76 Y-SS---AQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI------IGSGGRRKIFEN 141 (505)
Q Consensus 76 ~-~~---~~l~v~~~----~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~------~~~~~~~~~~~~ 141 (505)
. .. ..+.|... +|.+.... .....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....+.. ..+
T Consensus 192 ~~~~~~~~~l~v~~~~~~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~ 269 (388)
T 2v5m_A 192 TRLSATKGRLVITEPISSSAPRTPALV-QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK-QVS 269 (388)
T ss_dssp EEECSSCBCEEEECCCSCEEEECCSSC-CCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE-EET
T ss_pred eeeccccceEEEecCCcCCCCcCcccc-CCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee-ccc
Confidence 2 21 34555531 12121111 1234578999999999999999999999997432 22222332 346
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 221 (505)
+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|+++|.
T Consensus 270 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p--~i~W~~~g~ 346 (388)
T 2v5m_A 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID-PPTQTVDFGRPAVFTCQYTGNPIK--TVSWMKDGK 346 (388)
T ss_dssp TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEE-SSEEEECTTSCEEEEEEEEEECCC--EEEEEETTE
T ss_pred CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccC-CCcEEecCCCCEEEEEEeccccCC--eEEEEECCE
Confidence 78999999999999999999999999888889999876665443 456778899999999999998876 567999998
Q ss_pred EecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
.+... +..|.|..+..+|.|.|+|.|.|..|....++.|.|
T Consensus 347 ~i~~~-------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 347 AIGHS-------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp ECSCC-------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ECccC-------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 87542 468999999999999999999999999998888876
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=240.49 Aligned_cols=317 Identities=15% Similarity=0.161 Sum_probs=204.6
Q ss_pred CCCCCceEEEEEEeccCCC---eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceE-
Q psy14886 1 MDNQADLTWTCEAFGVPDV---TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY- 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~---~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~- 76 (505)
+.+|++++|.|.+.+.|++ .|+|+|++.++....... . ..+++|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 98 v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~---~---~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 170 (450)
T 1z7z_I 98 QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG---E---PAEVTTTVLVRR-DHHGANFSCRTELDLRPQGL 170 (450)
T ss_dssp ECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT---T---TEEEEEEEECCS-SCSSCEEEEEEEEECGGGTS
T ss_pred EeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc---c---ccceEEEEEeec-cccCceEEEEEEcccCCCCc
Confidence 3689999999999997776 999999999886321100 0 123589999999 9999999999998866422
Q ss_pred -------eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEEEECCEEecCCCcEEEeeCCCEEE
Q psy14886 77 -------SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVWKKDGNIIGSGGRRKIFENGNLLI 146 (505)
Q Consensus 77 -------~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W~~~g~~~~~~~~~~~~~~~~l~i 146 (505)
....+.|... |...... .....+.+|+.+.|.|.+.+. | .+.+.|+++|..+.. +.... ...+.+
T Consensus 171 ~~~~~~s~~~~l~v~~~-~~~~p~~-~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~-~~~~~~ 245 (450)
T 1z7z_I 171 ELFENTSAPYQLQTFVL-PATPPQL-VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYG-NDSFSA 245 (450)
T ss_dssp CEEEEECCCEECEECCC-CSSCCEE-ECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEE-TTEEEE
T ss_pred eEEeeccCccceeeecc-CCCCCEe-cCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEec-CCceeE
Confidence 2344455432 1110000 011468899999999999988 7 689999999998765 22222 222222
Q ss_pred c---CCCCCCCE--EEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCE
Q psy14886 147 S---PVSRDDSG--IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221 (505)
Q Consensus 147 ~---~v~~~d~G--~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 221 (505)
. ++..+|+| .|+|.+.|..|.....+.|.|...|..... .....+..|+.+.|.|.+. |.+ .+.| +|.
T Consensus 246 ~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~-~~~~~v~~G~~v~l~C~~~--p~p--~i~W--~g~ 318 (450)
T 1z7z_I 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI-LTKPEVSEGTEVTVKCEAH--PRA--KVTL--NGV 318 (450)
T ss_dssp EEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEE-ESCSEEETTCEEEEEEEC-----------------
T ss_pred EEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEe-cCCeeEeCCCcEEEEEecC--CCC--EeEE--CCE
Confidence 2 67899999 999999999998888888888874332222 2244788999999999997 444 5568 666
Q ss_pred EecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC-c---EEEEEEEEEcCCCCCCCc---eEEEEEeCCe
Q psy14886 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-K---ISTKTTVIVEGPPGLPGG---VQVVEVHKTS 294 (505)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g-~---~~~~~~l~v~~~p~~p~~---~~~~~~~~~~ 294 (505)
.+.... ....|.|..+..+|.|.|+|.|.|..+ . ....+.|.|..+|..... -......+..
T Consensus 319 ~~~~~~-----------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~ 387 (450)
T 1z7z_I 319 PAQPLG-----------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ 387 (450)
T ss_dssp -----C-----------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCE
T ss_pred EcCCCC-----------ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCe
Confidence 652211 234799999999999999999997655 3 336677778766644322 2344556778
Q ss_pred EEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 295 ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 295 v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
+.|.|.. .+.|...+. |......+. ... ..+ . +...+.+.|+|.|.|.+|...
T Consensus 388 ~~l~C~~---~g~P~p~i~----------W~~~g~~~~-------~~g-~~~--~-v~~~d~G~Y~C~a~N~~G~~~ 440 (450)
T 1z7z_I 388 QTPMCQA---WGNPLPELK----------CLKDGTFPL-------PIG-ESV--T-VTRDLEGTYLCRARSTQGEVT 440 (450)
T ss_dssp ECCCCCC---EEESCCEEE----------EEETTTEEC-------CTT-SCE--E-CCGGGCEEEEEEEEETTEEEE
T ss_pred EEEEEec---ccCCCCcEE----------EEECCcccC-------CCC-CeE--e-EehhhCeEEEEEEEeCCCcee
Confidence 8888863 222222233 222211110 011 111 3 778899999999999998764
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=239.94 Aligned_cols=269 Identities=19% Similarity=0.252 Sum_probs=197.4
Q ss_pred CCCCCceEEEEEEe-------ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAF-------GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~-------~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|++++|.|.+. +.|.+.|.|+|++..+.... ....++...+++|.|.+++ .+|+|.|+|.+.|..+
T Consensus 30 v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~---~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~n~~g 105 (339)
T 3o4o_C 30 RLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG---EEETRMWAQDGALWLLPAL-QEDSGTYVCTTRNASY 105 (339)
T ss_dssp EETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSC---CSSSCEEEETTEEEESSBC-TTCCEEEECCEEETTE
T ss_pred EECCccEEEEeccccccccccCCCCceEEEEECCCCcccCc---cccccEEeeCCeEEECCCC-cccCEEEEEEEECCcc
Confidence 35899999999998 88889999999998743211 1245777888999999999 9999999999999888
Q ss_pred ceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEee-----cCCCCCCeEEEEECCEEecCC-CcEEEeeC-CCEEE
Q psy14886 74 TRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSG-GRRKIFEN-GNLLI 146 (505)
Q Consensus 74 ~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~-----~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~-~~l~i 146 (505)
.....+.|.|...++.. .........+.+|+.+.|.|. +.+.|.+.+.|+++|..+... .++....+ +.|.|
T Consensus 106 ~~~~~~~l~V~~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i 184 (339)
T 3o4o_C 106 CDKMSIELRVFENTDAF-LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLV 184 (339)
T ss_dssp EEEEEEEEEEECSCGGG-HHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEE
T ss_pred eEEEEEEEEEEcCCCcc-ccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEE
Confidence 77778888888633321 111122346889999999999 788889999999999988754 34444433 46999
Q ss_pred cCCCCCCCEEEEEEEEcCCCc----eeeeEEEEEEeC----CeeeeeCCCceEEEeeccEEEEEEe---eecCCCCeEEE
Q psy14886 147 SPVSRDDSGIYSCTATNVHGM----DESKGRLIVLHG----PSYYEQLPPKITIAAHRNLQLRCSA---HTEELLDVAYI 215 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~~~ 215 (505)
.++..+|+|.|+|.|.|..|. ....+.|.|... ++.+...+....+..|+.+.|.|.+ .+.|. ...+.
T Consensus 185 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~-~~~v~ 263 (339)
T 3o4o_C 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPL-TTMLW 263 (339)
T ss_dssp SSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCS-SCEEE
T ss_pred cccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCC-CceEE
Confidence 999999999999999998773 455677777643 2233333555677889999999999 67662 34678
Q ss_pred EEeCCEEecCCCC---CcccCCeeeecCC------eEEEecCCCCCC-EEEEEEEEecCCcEEEEEEEEE
Q psy14886 216 WTHNGVRIGNMDL---NELETPNINIDGG------LLEITNASFADA-GEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 216 w~~~~~~~~~~~~---~~~~~~~~~~~~~------~l~i~~~~~~~~-g~y~C~~~n~~g~~~~~~~l~v 275 (505)
|++++..+..... ............+ .|.|..+..+|. |.|+|.|.|..|..+..+.+.+
T Consensus 264 W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp EESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred EEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence 9998876643210 0000011111122 799999999997 9999999999998766555433
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=230.98 Aligned_cols=267 Identities=16% Similarity=0.184 Sum_probs=196.0
Q ss_pred CCCCCceEEEEEEecc----CCCeEEEEECC--EECcCC--------CCCCCCCCcEEEE-----CCeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV----PDVTYSWFRNG--ELLNSE--------TLPLEDQDRYFIQ-----DNVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~----p~~~~~W~~~~--~~l~~~--------~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+. +.+.+.|+|++ ...... .......+|+.+. +.+|.|.+++ .+|+
T Consensus 26 v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~-~~D~ 104 (331)
T 3u83_A 26 GFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLE-LEDE 104 (331)
T ss_dssp EETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCC-GGGC
T ss_pred EEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccC-cccC
Confidence 3589999999999875 45679999954 111000 0001134566553 5689999999 9999
Q ss_pred eEEEEEE-EcccCceEeeEEEEEEecCCCccCCCCCceEEeeCC---CeEEEEee-cCCCCCCeEEEEECC--EEec---
Q psy14886 62 AMYQCRA-KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEG---GNVTIFCN-PEAAPKPKFVWKKDG--NIIG--- 131 (505)
Q Consensus 62 G~Y~C~~-~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g---~~v~l~C~-~~~~p~~~i~W~~~g--~~~~--- 131 (505)
|.|+|.+ .+..+.....+.|.|.. +|.+..........+.+| +.+.|.|. +.+.|.+.+.|++++ ....
T Consensus 105 G~Y~C~~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~ 183 (331)
T 3u83_A 105 GVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183 (331)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred cEEEEEEEecCCCccEEEEEEEEec-CCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccccee
Confidence 9999984 45566666778888886 565543333455678888 88999998 888899999999953 2211
Q ss_pred --CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCC
Q psy14886 132 --SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 209 (505)
Q Consensus 132 --~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 209 (505)
..... .....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+.........+..|+.+.|.|.+.+.|.
T Consensus 184 ~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 261 (331)
T 3u83_A 184 RNPNGTV--TVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPP 261 (331)
T ss_dssp ECTTSCE--EEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESC
T ss_pred ECCCCcE--EEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCC
Confidence 11111 11234888888999999999999999988888888988888876655555566788999999999999987
Q ss_pred CCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEe-cCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCC
Q psy14886 210 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT-NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281 (505)
Q Consensus 210 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~ 281 (505)
+. .+.|++++..+... ....+..|.|. .+..+|.|.|+|.|.|..|..+..+.|.|...+..
T Consensus 262 p~-~i~W~~~~~~~~~~---------~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 324 (331)
T 3u83_A 262 AT-EYHWTTLNGSLPKG---------VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL 324 (331)
T ss_dssp CC-EEEEEETTBSCCTT---------EEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred CC-EEEEEECCCccccc---------ceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence 64 36799988766432 22346789999 89999999999999999999999999999876654
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=222.94 Aligned_cols=267 Identities=15% Similarity=0.185 Sum_probs=192.2
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
.+.+..|.+++|.|.+.+.+ +...+.|.+++..+.... ......++.|.|.++...|.|.|+|. ..|...
T Consensus 15 ~v~~~~G~~v~l~C~~~~~~-~~~~i~W~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~~ 84 (325)
T 1n26_A 15 VLTSLPGDSVTLTCPGVEPE-DNATVHWVLRKPAAGSHP------SRWAGMGRRLLLRSVQLHDSGNYSCY---RAGRPA 84 (325)
T ss_dssp EEEECTTCCEEEECTTSCTT-CCSEEEEEEECSSSSCCC------EEEEEESSEEEECSCCGGGCEEEEEE---SSSSCS
T ss_pred cEECCCCCcEEEEeCCCCCC-CCceEEEEECCccCCccc------cccccccceEEecccchhhCeEeEEE---eCCEEe
Confidence 34446899999999988754 234677998765542111 12334567899999999999999999 367777
Q ss_pred EEEEEEEcCCCCCCCceEEEEE-eCCeEEEEeecCCCCCCCCceEEEEEEeC-CC--CCe-EEeeeccccceeeeecCce
Q psy14886 269 TKTTVIVEGPPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTN-WN--STW-FNVSEHVIGKEVDRYTGRK 343 (505)
Q Consensus 269 ~~~~l~v~~~p~~p~~~~~~~~-~~~~v~l~w~~~~~~~~~i~~y~v~~~~~-~~--~~w-~~~~~~~~~~~~~~~~~~~ 343 (505)
..+.|.|..+|..|. +.+... ....+.++|+++.+.+ ....|.+.|+.. +. ..| ..+..... .+..
T Consensus 85 ~~~~L~V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~-~~~~y~l~~~~~~~~~~~~~~~~c~~~~~-------~~~~ 155 (325)
T 1n26_A 85 GTVHLLVDVPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPS-LTTKAVLLVRKFQNSPAEDFQEPCQYSQE-------SQKF 155 (325)
T ss_dssp CEEEEEECCCCCCCC-CEEEBSSTTSCEEEEECCSSCCC-TTCEEEEEEEEESSSSCEEEEEEEEEETT-------TTEE
T ss_pred eeEEEEeccCCCCCc-eeEEeecCCCcEEEEECCCCCCC-CCceEEEEEEEccCCCCCcccccCCCCCC-------CCCE
Confidence 789999999999887 666532 3668999999887655 347899988764 21 122 22211111 1223
Q ss_pred eeEEeeecc-CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccc--cccEEEEEEeCCccccCCCCc
Q psy14886 344 EASIENVLV-PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK--IGDLSISWEPLPREKQNAPNI 420 (505)
Q Consensus 344 ~~~~~~~L~-~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~ 420 (505)
...+.. +. +.+.|.|+|.|.|..|.+. +... .+.+....++.||.++.+.... .+++.|+|+++...+.++.++
T Consensus 156 ~c~i~~-~~~~~~~Y~f~v~A~N~~G~~~-s~~~-~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~ 232 (325)
T 1n26_A 156 SCQLAV-PEGDSSFYIVSMCVASSVGSKF-SKTQ-TFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRL 232 (325)
T ss_dssp EEEECC-CTTCCCEEEEEEEEEETTEEEE-CCCE-EEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCE
T ss_pred EEEECC-CcccCcEEEEEEEEEcCCCCcc-cCcE-EEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeE
Confidence 334443 54 7899999999999999874 2221 3445556677899999987654 469999999965545677899
Q ss_pred eEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEE
Q psy14886 421 YYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481 (505)
Q Consensus 421 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~ 481 (505)
+|.|+|+..+...|....... ....+.|.+|.|++.|.|||+|.|.+|.|++|++..
T Consensus 233 ~Y~V~yr~~~~~~W~~~~~~~----~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~ 289 (325)
T 1n26_A 233 RFELRYRAERSKTFTTWMVKD----LQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSP 289 (325)
T ss_dssp EEEEEEEETTCSCCEEEECGG----GCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCC
T ss_pred EEEEEEEeCCCCCCEEEcccC----CceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCC
Confidence 999999999888898655432 235788999999999999999999999887776554
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=238.68 Aligned_cols=317 Identities=14% Similarity=0.096 Sum_probs=212.5
Q ss_pred CCCCCceEEEEEEeccCCCeE-----EEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTY-----SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~-----~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|++++|.|.+.+ |.+.+ .|+|++..+.. .++ ..|.|.+++ . |+| |+|.+.+..+..
T Consensus 11 v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~--------~~~----~~l~i~~v~-~-d~g-Y~C~a~~~~~~~ 74 (450)
T 1z7z_I 11 LPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG--------NNR----KVYELSNVQ-E-DSQ-PMCYSNCPDGQS 74 (450)
T ss_dssp EETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST--------TTE----EEEEEEEEC-S-CBC-CEEEEEETTEEE
T ss_pred EecCCcEEEEEEccC-CCcccccccceeeecceEecC--------CCc----eEEEEEecc-c-CCe-eEEEEeCCCCcc
Confidence 468999999999998 88888 99998875531 222 378999999 7 999 999998666666
Q ss_pred EeeEEEEEEecCCCcc-CCCCCceEEeeCCCeEEEEeecCCCCCC---eEEEEECCEEecCCCcEEEeeCCCEEEcCCCC
Q psy14886 76 YSSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIGSGGRRKIFENGNLLISPVSR 151 (505)
Q Consensus 76 ~~~~~l~v~~~~p~~~-~~~~~~~~~v~~g~~v~l~C~~~~~p~~---~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~ 151 (505)
...+.|.|.. +|.+. ..+ ....+.+|+++.|.|.+.+.|.+ .+.|+++|..+..........++.|.|.++..
T Consensus 75 ~~~~~l~V~~-~P~~~~~~~--~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~ 151 (450)
T 1z7z_I 75 TAKTFLTVYW-TPERVELAP--LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD 151 (450)
T ss_dssp EEECEEEEEB-CCSEEEECC--CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSS
T ss_pred eeEEEEEEEe-CCCcceecC--CCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeecc
Confidence 6678888886 55543 333 33568899999999999998887 99999999987543211111234799999999
Q ss_pred CCCEEEEEEEEcCCCcee--------eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCEE
Q psy14886 152 DDSGIYSCTATNVHGMDE--------SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVR 222 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~--------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~~ 222 (505)
+|+|.|+|.|.|..|... ....+.|...|...........+..|+.+.|.|.+.+. |.+.+.+.|++++..
T Consensus 152 ~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~ 231 (450)
T 1z7z_I 152 HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR 231 (450)
T ss_dssp CSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEE
T ss_pred ccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEe
Confidence 999999999999876432 22344444321110000011578899999999999988 534678899999988
Q ss_pred ecCCCCCcccCCeeeecCCeEEEe---cCCCCCCE--EEEEEEEecCCcEEEEEEEEEcCCCCCCCce-EEEEEeCCeEE
Q psy14886 223 IGNMDLNELETPNINIDGGLLEIT---NASFADAG--EYECVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSAT 296 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g--~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~-~~~~~~~~~v~ 296 (505)
+... .......+.+. .+..+|.| .|+|.|.|..|.......|.|...|.|...+ ......+..++
T Consensus 232 ~~~~---------~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~ 302 (450)
T 1z7z_I 232 LNPT---------VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVT 302 (450)
T ss_dssp CCCE---------EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEE
T ss_pred CCce---------EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEE
Confidence 7541 11112222222 56789999 9999999999998888899988755421100 01344667888
Q ss_pred EEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCC
Q psy14886 297 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG 368 (505)
Q Consensus 297 l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G 368 (505)
|.|... +.. ...| ....+. .......+.+.. +...+...|+|.|.|..|
T Consensus 303 l~C~~~-----p~p----------~i~W--~g~~~~-----~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~~ 351 (450)
T 1z7z_I 303 VKCEAH-----PRA----------KVTL--NGVPAQ-----PLGPRAQLLLKA-TPEDNGRSFSCSATLEVA 351 (450)
T ss_dssp EEEEC--------------------------------------CCCCCEEEEC-CGGGTTCEEEEEEEEEET
T ss_pred EEEecC-----CCC----------EeEE--CCEEcC-----CCCceEEEEEec-CcccCCceEEEEEEcCCC
Confidence 888743 111 2223 111110 000112344444 889999999999997665
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-31 Score=270.46 Aligned_cols=458 Identities=18% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCCCCceEEEEEEec--cCCCeEEEEECCEECcCCCCCCCC-----CCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLED-----QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~--~p~~~~~W~~~~~~l~~~~~~~~~-----~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|+.++|.|.+.+ .+...+.|++++..+......... ........++|.|.+++ .+|+|.|+|.+.|..+
T Consensus 236 v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~~ 314 (772)
T 3v2a_R 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT-RSDQGLYTCAASSGLM 314 (772)
T ss_dssp EETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCC-STTCSEEEEEEECSSC
T ss_pred EecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCC-cCCCeEEEEEEEcCCc
Confidence 358999999999987 456889999998876532110000 00122345689999999 9999999999999888
Q ss_pred ceEeeEEEEEEecCCCccCCC-CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 74 TRYSSAQLRVLTLKPSFKKRP-LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 74 ~~~~~~~l~v~~~~p~~~~~~-~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
.....+.|.|.. +|.+...+ ......+.+|+.+.|.|.+.+.|.+.+.|+++|..+.... .+.....|.|.++...
T Consensus 315 ~~~~~~~l~V~~-~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~L~i~~v~~~ 391 (772)
T 3v2a_R 315 TKKNSTFVRVHE-KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH--TIKAGHVLTIMEVSER 391 (772)
T ss_dssp EEEEEEEEEEEC-CCC----------------------------------------------------------------
T ss_pred ceeEEEEEEEeC-CCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCc--eEccceeEEEecCChh
Confidence 777788888886 56544332 2234568899999999999999999999999998876532 2224478999999999
Q ss_pred CCEEEEEEEEcCCCceee--eEEEEEEeCCeeeee--CCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecC---
Q psy14886 153 DSGIYSCTATNVHGMDES--KGRLIVLHGPSYYEQ--LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN--- 225 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~~--~~~l~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~--- 225 (505)
|+|.|+|.|.|..|.... .+.|.|..+|.+... ......+..|+.+.|.|.+.+.|.|. .+.|++++.....
T Consensus 392 d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-~v~W~~~~~~~~~~~~ 470 (772)
T 3v2a_R 392 DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPH-HIHWYWQLEEECANEP 470 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCc-EEEEEEcCCccccccc
Confidence 999999999998886543 466777666655322 11122377899999999999987764 2557765321000
Q ss_pred -----------------------C-CCCcccCCe-----eeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 226 -----------------------M-DLNELETPN-----INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 226 -----------------------~-~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
. ......... .......|.+..+ +|.|.|+|.|.|..|.....+.+.|.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~ 548 (772)
T 3v2a_R 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVT 548 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEE
Confidence 0 000000000 0011135556554 68999999999999998888888888
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCC-----------------CCeEEeeeccccceeeee
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-----------------STWFNVSEHVIGKEVDRY 339 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-----------------~~w~~~~~~~~~~~~~~~ 339 (505)
.+|............+..+.|.|... +.+...+.+....... ..|....... ...
T Consensus 549 ~~p~i~~~p~~~~~~G~~v~l~C~~~---~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 620 (772)
T 3v2a_R 549 RGPEITLQPDMQPTEQESVSLWCTAD---RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMF-----SNS 620 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceeeccCCcccccCCceEEEEecc---CCCCCCcEEEEcCCcccccccCcccccccccccceeeccceee-----ecC
Confidence 76654333333345667788888743 2221222222110000 0000000000 000
Q ss_pred c-CceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCC---CCCceeeeeccccccEEEEEEeCCcccc
Q psy14886 340 T-GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY---QAPSRIGGGGGKIGDLSISWEPLPREKQ 415 (505)
Q Consensus 340 ~-~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~---~~P~~~~~~~~~~~~v~l~W~~~~~~~~ 415 (505)
. ....+.+.+ +...+.+.|+|.|.|..|....+... .+......+| ..|.+..+. ....+.|.... .+
T Consensus 621 ~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~~~~~~s~~~-~l~v~~~~~P~~~~~~~~~~v~--~g~~~~l~C~~----~g 692 (772)
T 3v2a_R 621 TNDILIMELKN-ASLQDQGDYVCLAQDRKTKKRHCVVR-QLTVLERVAPTITGNLENQTTS--IGESIEVSCTA----SG 692 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEECC-CCccCCcEEEEEEEeCCCCeEEEEEE-eecccccCCCEeecCCCceEEe--CCCCEEEEEEe----Cc
Confidence 0 111244555 99999999999999976554322211 1111111111 112222221 23445555543 11
Q ss_pred CCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 416 NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 416 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
..+ -.|.|...+..-........ ......+.|.++.+.-.=.++..|.|.+|....+-.+.+.-.|
T Consensus 693 ~P~---p~v~W~k~g~~l~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p 758 (772)
T 3v2a_R 693 NPP---PQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758 (772)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cCC---CeEEEEECCeECcCCCCeEE--cCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCC
Confidence 111 13445444411000000000 0012345566666656666788899999987766555544333
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=218.50 Aligned_cols=237 Identities=20% Similarity=0.251 Sum_probs=180.4
Q ss_pred CCCCCceEEEEEEec-cCCC--eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcC---CCCCCCeE--EEEEEEccc
Q psy14886 1 MDNQADLTWTCEAFG-VPDV--TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL---NPERDPAM--YQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~--~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~---~~~~d~G~--Y~C~~~~~~ 72 (505)
|.+|+.++|.|.+.+ .|.+ .|+|+|++..+.. ++...+..|.+..+ + .+|+|. |+|.+.|..
T Consensus 15 v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---------~~~~~~~~~~~~~~~~~~-~~d~g~g~Y~C~a~n~~ 84 (265)
T 2oz4_A 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---------TVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGN 84 (265)
T ss_dssp EETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---------EEEECSSEEEEEEEEEEC-GGGCEEEEEEEEEEETT
T ss_pred EecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---------eEeeCCCeEEEEeecccc-cccCCcceEEEEEecCC
Confidence 468999999999998 7765 9999999998862 44445667777766 6 678884 999999988
Q ss_pred CceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 73 KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 73 ~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
+.....+.|.|...++ ....+ ....+.+|+.+.|.|.+. |.+.+.| +|..+.... ..+.|.|..+..+
T Consensus 85 ~~~~~~~~l~V~~~p~-p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-----~~~~l~i~~~~~~ 152 (265)
T 2oz4_A 85 QSQETLQTVTIYSFPA-PNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-----PRAQLLLKATPED 152 (265)
T ss_dssp EEEEEEEEEEEECCCC-CEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS-----SEECCEEECCGGG
T ss_pred CCcEEEEEEEEeCCCC-ceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC-----CcEEEEEcccccc
Confidence 8887788898875433 22222 234578899999999998 7889999 777764322 1245889999999
Q ss_pred CCEEEEEEEEcCC-Ccee---eeEEEEEEeCCeeeeeC-CCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC
Q psy14886 153 DSGIYSCTATNVH-GMDE---SKGRLIVLHGPSYYEQL-PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227 (505)
Q Consensus 153 d~G~y~C~~~~~~-g~~~---~~~~l~v~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~ 227 (505)
|+|.|+|.|.|.. |... ..+.|.|..+|.+.... +....+..|+.+.|.|.+.+.|.| .+.|++++..+...
T Consensus 153 ~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p--~i~W~~~~~~~~~~- 229 (265)
T 2oz4_A 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP--ELKCLKDGTFPLPI- 229 (265)
T ss_dssp TTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC--EEEEEETTTEECCT-
T ss_pred CCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCC--eEEEEECCcccCCC-
Confidence 9999999998544 6655 55778887777664432 345678899999999999999876 45699988733221
Q ss_pred CCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 228 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
..+. .+..+|.|.|+|.|.|..|..+..+.|.|..
T Consensus 230 -------------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 230 -------------GESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp -------------TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred -------------CcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 1121 3667999999999999999999999998875
|
| >1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-28 Score=205.46 Aligned_cols=198 Identities=29% Similarity=0.543 Sum_probs=164.7
Q ss_pred EcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 275 v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
|+.+|.+|.++.+.. ..+++.|+|.++.+++.++.+|.|+|+.... ..|......+. +....+..+ |.|
T Consensus 2 v~~~P~~P~~~~~~~-~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~-L~p 71 (205)
T 1cfb_A 2 VQDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP--------NTDSSFVVQ-MSP 71 (205)
T ss_dssp CCCCCCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEE--------TTCSEEEEE-CCS
T ss_pred cccCCCCCCCcEEEe-cCCEEEEEEECcccCCCceEEEEEEEecCCCCCCceeeeeccC--------CCceEEEEe-CCC
Confidence 567899999999999 9999999999998788899999999987654 67865543332 233344455 999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC-
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT- 432 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~- 432 (505)
++.|.|+|+|.|..|.|.++.....+.|.+..|+.+|.++.+...+.++|.|.|++|+..+.+|.+.+|+|+|+..+..
T Consensus 72 ~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~ 151 (205)
T 1cfb_A 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAA 151 (205)
T ss_dssp SEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTC
T ss_pred CCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCC
Confidence 9999999999999999998855558889899998899999999888999999999976668999999999999998744
Q ss_pred CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC-CceEEEeec
Q psy14886 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE-SEVVTIWHD 485 (505)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~-s~~~~~~t~ 485 (505)
.|....+.. .....+.|.+|.|++.|.|+|+|+|.+|.|++ |+.+.+.|.
T Consensus 152 ~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~ 202 (205)
T 1cfb_A 152 AWENNNIFD---WRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 202 (205)
T ss_dssp CCEEEEECC---TTCCEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESS
T ss_pred CcEEEEecC---CCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecC
Confidence 477655432 12367899999999999999999999999995 788888775
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=229.15 Aligned_cols=260 Identities=17% Similarity=0.201 Sum_probs=187.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--CCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|++++|.|.+.+. +.|++++.... ++... .++|.|.+++ .+|+|.|+|.+.|..+.....
T Consensus 16 v~~G~~v~L~C~~~~~----v~W~~~~~~~~----------~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~~~~~~~ 80 (292)
T 4dkd_C 16 VKPGATVTLRCVGNGS----VEWDGPPSPHW----------TLYSDGSSSILSTNNAT-FQNTGTYRCTEPGDPLGGSAA 80 (292)
T ss_dssp ECTTCCEEEEEECSSC----CCBCCCCCSSC----------EECCBTTEEEEEESSCC-GGGCSCEEECCCC----CCEE
T ss_pred EcCCCcEEEEEcCCCc----eEEccCCCCce----------EEeccCceEEEEEcccc-cccCEEEEEEEccCCCCcceE
Confidence 4689999999999873 89997653211 11111 2589999999 999999999999887777777
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCC--CeEEEEEC-CEEecCCCcEEEeeCCCEEEcCCCCCCCE
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK--PKFVWKKD-GNIIGSGGRRKIFENGNLLISPVSRDDSG 155 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~--~~i~W~~~-g~~~~~~~~~~~~~~~~l~i~~v~~~d~G 155 (505)
+.|.|...+..+...+ ....+.+|+.+.|.|.+.+ |. +.+.|+++ +..+....+.....++.|.|.++...|+|
T Consensus 81 ~~l~V~~~~~~~~~~~--~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 157 (292)
T 4dkd_C 81 IHLYVKDPARPWNVLA--QEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQ 157 (292)
T ss_dssp ECCEECCSSCCEEESC--SEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCS
T ss_pred EEEEEcCccccccccC--CeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCe
Confidence 8888886332233332 4577899999999999987 44 68999997 66665555666666677999999999999
Q ss_pred EEEEEEEcCCCceee-eEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc
Q psy14886 156 IYSCTATNVHGMDES-KGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~-~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 230 (505)
.|+|.+.|..+.... .+.|.|.. +|.+. ..+....+..|+.+.|.|.+.+.+ +.+.|.|.+++..+.......
T Consensus 158 ~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~-~~~~~~~~~~g~~v~l~C~~~~~~-~~~~~~w~~~~~~~~~~~~~~ 235 (292)
T 4dkd_C 158 DYQCSALMGGRKVMSISIRLKVQKVIPGPPALT-LVPAELVRIRGEAAQIVCSASSVD-VNFDVFLQHNNTKLAIPQQSD 235 (292)
T ss_dssp EEEEEECSTTSCEECCCEEEEEECCCCSSCEEE-EESSCBCCCSSSCEEEEEEEEESS-SCCEEECCBSSCCCCCCBEEE
T ss_pred EEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEE-ccCCceeEecCCCEEEEEEecCCC-CceEEEEeCCCcccccCccce
Confidence 999999988776644 57888876 44443 334455567899999999999766 456788998877654322111
Q ss_pred ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCC
Q psy14886 231 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281 (505)
Q Consensus 231 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~ 281 (505)
..... ......|.|.++..+|.|.|+|.|.|..|..+..+.|.|......
T Consensus 236 ~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~ 285 (292)
T 4dkd_C 236 FHNNR-YQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285 (292)
T ss_dssp EETTE-EEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC------
T ss_pred eccce-eeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCc
Confidence 11111 113358999999999999999999999999999999988766544
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=229.98 Aligned_cols=226 Identities=14% Similarity=0.126 Sum_probs=177.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+.|.+.+.|+|++..+ .....+|.|.+++ .+|+|.|+|.+.+..+.....+.
T Consensus 108 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-------------~~~~~~L~i~~v~-~~d~G~Y~C~a~~~~~~~~~~~~ 173 (363)
T 1wio_A 108 LLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------------IQGGKTLSVSQLE-LQDSGTWTCTVLQNQKKVEFKID 173 (363)
T ss_dssp EESBSCEEEEEECCTTCCCCEEEECSSSCE-------------EEESSEEEECSBC-GGGCEECEEEEEETTEEEEECCE
T ss_pred EecCCCEEEEEEcCCCCCCeEEEEcCCCcc-------------cccceEEEEeeCC-hhcCCEEEEEEecCCCeEEEEEE
Confidence 358999999999988899999999986432 3357899999999 99999999999987666666677
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecC--------CCcEEEe--------
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGS--------GGRRKIF-------- 139 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~--------~~~~~~~-------- 139 (505)
+.|.. +|.. +....+.+|+.+.|.|.+.+ .|.+.+.|+++|..+.. +.+..+.
T Consensus 174 l~v~~-~p~~-----~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (363)
T 1wio_A 174 IVVLA-FQKA-----SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL 247 (363)
T ss_dssp ECEEC-CSCS-----EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCC
T ss_pred EEEec-CCCC-----CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhh
Confidence 77774 3322 14567889999999998877 67889999999987765 3444432
Q ss_pred ---e--CCCEEEcCCCCCCCEEEEEEEEcC--CCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCe
Q psy14886 140 ---E--NGNLLISPVSRDDSGIYSCTATNV--HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 212 (505)
Q Consensus 140 ---~--~~~l~i~~v~~~d~G~y~C~~~~~--~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 212 (505)
. ...|.|.++..+|+|.|+|.|.|. .|.....+.|.|.. ..|..+.|.|.+.+.|.|.+
T Consensus 248 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~--------------v~g~~~~l~C~~~g~p~p~~ 313 (363)
T 1wio_A 248 QMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR--------------ATQLQKNLTCEVWGPTSPKL 313 (363)
T ss_dssp BCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE--------------ECCCSSSEEEEEESSCCTTC
T ss_pred hcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE--------------ecCCCeeEEEEEccccCCCc
Confidence 2 237999999999999999999999 89888888888751 12788999999999988887
Q ss_pred EEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 213 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 213 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
.+.|++++..+.. +..|.|..+..+|.|.|+|.|.|. |....+..+.|
T Consensus 314 ~i~W~~~~~~~~~--------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 314 MLSLKLENKEAKV--------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp CEEEECSSSSCSE--------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred cEEEEeCCCceee--------------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 7889999865542 234567888899999999999964 44444544444
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=233.87 Aligned_cols=297 Identities=19% Similarity=0.209 Sum_probs=185.5
Q ss_pred CCCCCceEEEEEEeccCC----CeEEEEECC--EECc---C--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPD----VTYSWFRNG--ELLN---S--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~----~~~~W~~~~--~~l~---~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~ 65 (505)
|.+|++++|.|.+.+.+. +.+.|+|++ ..+. . .........|+... ..+|.|.+++ .+|+|.|+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~ 91 (438)
T 1qgc_4 13 VSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE-ADDVATYY 91 (438)
T ss_dssp ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC-GGGCEEEE
T ss_pred eeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc-CcCCeeEE
Confidence 468999999999988765 489999963 2221 0 00001123566553 2479999999 99999999
Q ss_pred EEEEcccCce-EeeEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCCCcE--EE
Q psy14886 66 CRAKNQLKTR-YSSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSGGRR--KI 138 (505)
Q Consensus 66 C~~~~~~~~~-~~~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~~~~--~~ 138 (505)
|.+.|..+.. ...+.|.|.. .+|.+...+.. ....+|+.+.|.|.+.+ .|.+ .+.|+++|..+...... ..
T Consensus 92 C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~ 169 (438)
T 1qgc_4 92 CQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTD 169 (438)
T ss_dssp EEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEEC
T ss_pred EEEecCCCccccCceeEEecCCCCCCEEEecCCC--hhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecccc
Confidence 9999877643 2345666653 23444332211 12346889999999977 5766 99999999988654111 11
Q ss_pred --------eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCC
Q psy14886 139 --------FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL 210 (505)
Q Consensus 139 --------~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 210 (505)
...+.|.|.++..+|+|.|+|.|.|..+.......+.+...+..+ ..+....+..|+.+.|.|.+.+.+.+
T Consensus 170 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~ 248 (438)
T 1qgc_4 170 QDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVML-VESGGGLVKPGGSLKLSCTASGFIFN 248 (438)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEE-EEECCEEECTTCCEEEEEEEESSCGG
T ss_pred ccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEE-ecCCceEEecCCcEEEEEEEcccccC
Confidence 112358999999999999999999988765333333221112222 22445678899999999999988744
Q ss_pred CeEEEEEeC--CEEecCC-------C-----CCcccCCeeeec----CCeEEEecCCCCCCEEEEEEEEecCC-----cE
Q psy14886 211 DVAYIWTHN--GVRIGNM-------D-----LNELETPNINID----GGLLEITNASFADAGEYECVVKSTVG-----KI 267 (505)
Q Consensus 211 ~~~~~w~~~--~~~~~~~-------~-----~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~n~~g-----~~ 267 (505)
...+.|+++ +..+... . ............ ...|.|.++..+|.|.|+|.|.|..+ ..
T Consensus 249 ~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 328 (438)
T 1qgc_4 249 RCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYW 328 (438)
T ss_dssp GSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSB
T ss_pred CcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceee
Confidence 456779875 4332110 0 000001111111 23799999999999999999998544 22
Q ss_pred EEEEEEEEcCCC-CCCCceEE----EEEeCCeEEEEeec
Q psy14886 268 STKTTVIVEGPP-GLPGGVQV----VEVHKTSATIQWTD 301 (505)
Q Consensus 268 ~~~~~l~v~~~p-~~p~~~~~----~~~~~~~v~l~w~~ 301 (505)
.....+.|...+ .+|..... ....+..++|.|..
T Consensus 329 ~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 367 (438)
T 1qgc_4 329 GQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLV 367 (438)
T ss_dssp CCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEE
T ss_pred CCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEe
Confidence 234566665422 22221111 11246788888884
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=225.35 Aligned_cols=260 Identities=14% Similarity=0.158 Sum_probs=167.1
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEECcCC--CCCCCCCCcEEE---------ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSE--TLPLEDQDRYFI---------QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~l~~~--~~~~~~~~~~~~---------~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
|.+|++++|.|.+.+. |.+.|.|+|++.++... ........|+.. ...+|.|.+++ .+|+|.|+|.+
T Consensus 15 v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a 93 (327)
T 2wng_A 15 VAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT-PADAGTYYCVK 93 (327)
T ss_dssp EETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC-GGGCEEEEEEE
T ss_pred EecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc-cccCeEEEEEe
Confidence 4689999999999886 88899999987543210 000001234442 34589999999 99999999999
Q ss_pred EcccCceE-----eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC--eEEEEECCEEecCCCcEEEe--
Q psy14886 69 KNQLKTRY-----SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIF-- 139 (505)
Q Consensus 69 ~~~~~~~~-----~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~~~~~~~-- 139 (505)
.|..+... ..+.|.|...+....+.. +...+.+|+.+.|.|.+.+.|++ .+.|+++|..+.........
T Consensus 94 ~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~--~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~ 171 (327)
T 2wng_A 94 FRKGSPDTEFKSGAGTELSVRAKPSAPVVSG--PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVG 171 (327)
T ss_dssp EESSTTCEEEEECCCEEEEEEBCCCCCEEEC--CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSS
T ss_pred ecCCCcceeEeecCcEEEEEEecCCCceeec--cccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccccccc
Confidence 98765411 246777775332212211 22457899999999999988655 99999999988643322111
Q ss_pred e------CCCEEEcCCCCCCCEEEEEEEEcCCCce---eeeEEE--EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecC
Q psy14886 140 E------NGNLLISPVSRDDSGIYSCTATNVHGMD---ESKGRL--IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE 208 (505)
Q Consensus 140 ~------~~~l~i~~v~~~d~G~y~C~~~~~~g~~---~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 208 (505)
. ...|.|.....+|.|.|+|.|.|..+.. .....+ .+..+|.+...... +..|+.+.|.|.+.+.+
T Consensus 172 ~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~---~~~G~~v~l~C~~~g~~ 248 (327)
T 2wng_A 172 ESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAENQVNVTCQVRKFY 248 (327)
T ss_dssp CCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC---CSSTTCCEEEEEEEEEB
T ss_pred CCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC---cCCCCcEEEEEEEcccc
Confidence 1 1236676666777899999999987653 223333 23334444332211 56899999999999976
Q ss_pred CCCeEEEEEeCCEEecCCCCC---cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 209 LLDVAYIWTHNGVRIGNMDLN---ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 209 ~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
++.+.+.|+++|..+...... ...... ......|.|..+..+|.|.|+|.|.|..|..
T Consensus 249 p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 249 PQRLQLTWLENGNVSRTETASTVTENKDGT-YNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp SSCEEEEEEETTEEEEEEECCSCEECTTSC-EEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred CCCcEEEEEECCeEccCcccCceEECCCCc-EEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 666788999999987542100 000000 0111357778888899999999999998864
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-28 Score=245.42 Aligned_cols=352 Identities=16% Similarity=0.174 Sum_probs=224.4
Q ss_pred ceEEeeCCCeEEEEeecC-------CCCCCeEEEEECCEEecCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCC--C
Q psy14886 97 SETYAGEGGNVTIFCNPE-------AAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVH--G 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~-------~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~--g 166 (505)
.+..+..|++++|.|.+. +.+.+.|.|+++|..+.......+. ....|+|.++...|++ |+|.+.... .
T Consensus 11 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~~~~~ 89 (589)
T 3l5h_A 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTFGQLE 89 (589)
T ss_dssp SCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCTTCC-
T ss_pred CCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccCCCcc
Confidence 334588999999999987 5566799999999776543211111 1346889999888765 789886311 1
Q ss_pred ceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE-------ecCCCCCcccCCeee-e
Q psy14886 167 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR-------IGNMDLNELETPNIN-I 238 (505)
Q Consensus 167 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~-------~~~~~~~~~~~~~~~-~ 238 (505)
.....+.|.+..+|.. ...|.|..... ..+.+.|...... +..... ........ .
T Consensus 90 ~~~~~~~l~v~~pP~~--------------P~nl~c~~~~~--~~~~~~W~~~~~~~~~~~y~l~~~~~-~~~~~~c~~~ 152 (589)
T 3l5h_A 90 QNVYGITIISGLPPEK--------------PKNLSCIVNEG--KKMRCEWDGGRETHLETNFTLKSEWA-THKFADCKAK 152 (589)
T ss_dssp CCCCCCCCCC-CCCCC--------------CEEEEEEEETT--SCEEEEEECCSCCSSCEEEEECCBCS-SSBCCCEECB
T ss_pred cEEEeEEEeccCCCCC--------------CEeeEEEECCC--ceEEEEECCCCcCCcCceEEEEEEEc-CCCcccCCCC
Confidence 1223344555444432 22333433322 1233334331100 000000 00000000 0
Q ss_pred --cCCeEEEe-cCCCCCCEEEEEEEEecCCcEE-EEEEEEE--cCCCCCCCceEE--EEEeCCeEEEEeecCCCCCCCCc
Q psy14886 239 --DGGLLEIT-NASFADAGEYECVVKSTVGKIS-TKTTVIV--EGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPIT 310 (505)
Q Consensus 239 --~~~~l~i~-~~~~~~~g~y~C~~~n~~g~~~-~~~~l~v--~~~p~~p~~~~~--~~~~~~~v~l~w~~~~~~~~~i~ 310 (505)
......+. .+.....+.|+|.|.|..|... ....+.+ ..+|.+|.++.+ .....+++.|+|++|...+.++.
T Consensus 153 ~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~ 232 (589)
T 3l5h_A 153 RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL 232 (589)
T ss_dssp TTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCE
T ss_pred CCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeE
Confidence 11233344 4555667889999999999752 2233332 236889988888 34678899999999887677889
Q ss_pred eEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCC--ccCCCCCCCC
Q psy14886 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ--YNTPADKPYQ 388 (505)
Q Consensus 311 ~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~--~~t~~~~p~~ 388 (505)
.|.|+|+..+...|........ ......+...+|.|++.|.|+|+|.|..|.|.+|.++.. +.|.+..|..
T Consensus 233 ~Y~v~~~~~~~~~w~~~~~~~~-------~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~ 305 (589)
T 3l5h_A 233 KYNIQYRTKDASTWSQIPPEDT-------ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305 (589)
T ss_dssp EEEEEEEETTCSCCBCCCTTSS-------CSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCS
T ss_pred EEEEEECCCCCCCcEEEccccC-------cCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCC
Confidence 9999999988888876432110 122233344449999999999999999999888766533 5777788878
Q ss_pred CCceeeee----ccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 389 APSRIGGG----GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 389 ~P~~~~~~----~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
+|..+... ....++|.|.|+++++.+.+|.|.+|+|+|+..+. .|.. .. . ....+. .|.+++.|.|+
T Consensus 306 ~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~-~~~~--~~--~--~~~~~~--~l~~~~~Y~~~ 376 (589)
T 3l5h_A 306 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-HLQN--YT--V--NATKLT--VNLTNDRYLAT 376 (589)
T ss_dssp CCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTS-CCCB--CC--C--SSSCCE--ECCCSSCCCEE
T ss_pred CCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCC-Ccee--ec--c--CCceEE--EEeCCCCEEEE
Confidence 89866543 45678999999998888999999999999987663 3321 11 1 112222 37789999999
Q ss_pred EEEecCCCCCCCCceEEE
Q psy14886 465 VQAINDVGPGPESEVVTI 482 (505)
Q Consensus 465 v~a~n~~G~g~~s~~~~~ 482 (505)
|.|+|.+|.|+++.....
T Consensus 377 V~A~n~~G~~~~s~~~~~ 394 (589)
T 3l5h_A 377 LTVRNLVGKSDAAVLTIP 394 (589)
T ss_dssp EEEEBTTBCCCCCCCCCC
T ss_pred EEEEeCCccCCCeEEEee
Confidence 999999999999976554
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-28 Score=216.73 Aligned_cols=257 Identities=16% Similarity=0.199 Sum_probs=168.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|++++|.|.+.+. ++|+|++..+. .+... ..++|.|.+++ .+|+|.|+|.+.|..|..
T Consensus 12 v~~G~~v~L~C~~~~~----v~W~~~~~~~~---------~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~n~~g~~ 77 (289)
T 3mjg_X 12 LNVSSTFVLTCSGSAP----VVWERMSQEPP---------QEMAKAQDGTFSSVLTLTNLT-GLDTGEYFCTHNDSRGLE 77 (289)
T ss_dssp CCTTCCEEEEEEESSC----CEEEBTTBCCS---------EEEEECTTSCEEEEEEECSCC-GGGCEEEEEECCC-----
T ss_pred EeCCCcEEEEEeccce----EEEECCCCCcc---------cceeccCCCceeEEEEEccCC-hhhCEEEEEEEcccCCCC
Confidence 5789999999999874 99999998763 12222 13589999999 999999999999887652
Q ss_pred -EeeEEEEEEecCCCccCCCCCce---EEeeCCCeEEEEeecCCCCCCeEEEEECC--EEecCCCcEEEeeCCCEEEcCC
Q psy14886 76 -YSSAQLRVLTLKPSFKKRPLESE---TYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIGSGGRRKIFENGNLLISPV 149 (505)
Q Consensus 76 -~~~~~l~v~~~~p~~~~~~~~~~---~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~~~~~~~~~~~~~~~l~i~~v 149 (505)
.....+.|....|.....+.... ..+.+|+.+.|.|.+. .|.+.+.|++++ ..+.. . ......+.
T Consensus 78 ~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~--~--~~~~~~~~---- 148 (289)
T 3mjg_X 78 TDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV--P--YDHQRGFS---- 148 (289)
T ss_dssp -CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC--C--EETTTEEE----
T ss_pred cCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce--e--ecCCcCee----
Confidence 22344444432232222221222 6789999999999998 677889998864 22221 1 11111121
Q ss_pred CCCCCEEEEEEEEcCCCceeee-EEEEEEe-CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC
Q psy14886 150 SRDDSGIYSCTATNVHGMDESK-GRLIVLH-GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~ 227 (505)
...|+|.|+|.|.+..+..... ..+.|.. .++.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++.......
T Consensus 149 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~v~W~~~~~~~~~~~ 226 (289)
T 3mjg_X 149 GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV--NFEWTYPRKESGRLV 226 (289)
T ss_dssp ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSB--EEEEECTTSSSSCCC
T ss_pred eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCc--ceEEEcCCccCCCcc
Confidence 3579999999999876655443 5566654 22323333344678899999999999987654 677997665432211
Q ss_pred CCccc--CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCC
Q psy14886 228 LNELE--TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282 (505)
Q Consensus 228 ~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p 282 (505)
..... ..........|.|..+..+|.|.|+|.|.|..|....+..|.+...|...
T Consensus 227 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 227 EPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp CCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred cccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 00000 00001123689999999999999999999999999999999998766543
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=214.03 Aligned_cols=254 Identities=20% Similarity=0.264 Sum_probs=180.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE---ECC--eEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI---QDN--VLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~---~~~--~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.. ...++.+ .++ +|.|.+++ .+|+|.|+|.+.|..|..
T Consensus 16 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~ 88 (305)
T 2nzi_A 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA------DGLKYRIQEFKGGYHQLIIASVT-DDDATVYQVRATNQGGSV 88 (305)
T ss_dssp ECTTCCEEEEEEEECSSCCEEEEEETTEECCC------CSSSEEEEEETTTEEEEEESSCC-GGGCSEEEEEEEETTEEE
T ss_pred EeCCCcEEEEEEEeCCCCCeEEEEECCEEccc------CCCeEEEEECCCCEEEEEEccCC-hhhCeEEEEEEEcCCCCc
Confidence 46899999999999999999999999998873 2234433 223 89999999 999999999999998887
Q ss_pred EeeEEEEEEecCCCccCCC---CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcC-
Q psy14886 76 YSSAQLRVLTLKPSFKKRP---LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISP- 148 (505)
Q Consensus 76 ~~~~~l~v~~~~p~~~~~~---~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~- 148 (505)
...+.|.|.. +|.+.... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+... ..|.|.+
T Consensus 89 ~~~~~l~V~~-~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 167 (305)
T 2nzi_A 89 SGTASLEVEV-PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167 (305)
T ss_dssp EEEEEEEECE-EEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTC
T ss_pred cceEEEEEec-CCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecC
Confidence 7788888875 33332211 11346688999999999999999999999999988876666655432 4699999
Q ss_pred CCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCC
Q psy14886 149 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~ 228 (505)
+...|.|.|+|.|.|..|.....+.|.|...|...... ......+..+.|.|.............+...........+
T Consensus 168 ~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~--~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w 245 (305)
T 2nzi_A 168 VERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV--KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERW 245 (305)
T ss_dssp CCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEE--EEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCE
T ss_pred CccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCc--eeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCcc
Confidence 99999999999999999999888999988765432210 1111345677788875322111111111111111111111
Q ss_pred CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 229 NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 229 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
. .........+.|.++...+.|.|+|.|.|..|...
T Consensus 246 ~----~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~ 281 (305)
T 2nzi_A 246 L----RVGQARETRYTVINLFGKTSYQFRVIAENKFGLSK 281 (305)
T ss_dssp E----EEEEESSSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred E----ECccccCceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence 0 00111256899999999999999999999999754
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-28 Score=220.45 Aligned_cols=258 Identities=16% Similarity=0.181 Sum_probs=165.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC-----ce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK-----TR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~-----~~ 75 (505)
|.+|++++|.|.+.+. .+.+.|+|+|..+.. ........+.|.|.+++ .+|+|.|+|.+.+..+ ..
T Consensus 35 v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~-------~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~~~~~~~~~~~~ 105 (316)
T 3vh8_G 35 VPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIP-------IFHGRIFQESFNMSPVT-TAHAGNYTCRGSHPHSPTGWSAP 105 (316)
T ss_dssp EETTSCEEEEEEBTTB-CCSEEEEESSCSSSC-------HHHHCCBSSCEEECSCC-GGGCEEEEEEEBCSSSSSSBCCC
T ss_pred cCCCCCEEEEEEccCC-CceEEEEeCCCccce-------eecCCcceEEEEECCCC-cccCeEEEEEEEcCCCCcceecC
Confidence 4689999999999876 688999999987642 11112246789999999 9999999999986322 23
Q ss_pred EeeEEEEEEecC--CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE----eeCCCEEEcCC
Q psy14886 76 YSSAQLRVLTLK--PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----FENGNLLISPV 149 (505)
Q Consensus 76 ~~~~~l~v~~~~--p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~----~~~~~l~i~~v 149 (505)
...+.|.|...+ |.+...+ . ..+.+|++++|.|.+. .+.+.+.|+++|..+........ ...+.|.|.++
T Consensus 106 s~~~~l~V~~~~~~p~~~~~~--~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v 181 (316)
T 3vh8_G 106 SNPVVIMVTGNHRKPSLLAHP--G-PLVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPM 181 (316)
T ss_dssp CCCEEEEEECSSCCCEEEEES--C-SEEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSC
T ss_pred CCcEEEEEecCCCCCeEEecC--C-CccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCC
Confidence 335667776432 3333322 2 2378999999999995 45669999999877643211111 12346999999
Q ss_pred CCCCCEEEEEEEEcCCCce-----eeeEEEEEEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 150 SRDDSGIYSCTATNVHGMD-----ESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~-----~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
..+|+|.|+|.|.|..|.. .....|.|... ++.+...+ ...+..|+.++|.|.+.. + ...+.|+++|..
T Consensus 182 ~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~-~--~~~~~W~k~g~~ 257 (316)
T 3vh8_G 182 MLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP-GPKVQAGESVTLSCSSRS-S--YDMYHLSREGGA 257 (316)
T ss_dssp CGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES-CSCCCTTSCCEEEEEESS-C--CSEEEEEETTSS
T ss_pred ChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC-CCeecCCCcEEEEEECCC-C--CcEEEEEECCCc
Confidence 9999999999999987742 34466777542 22222222 235678999999999873 3 347889998865
Q ss_pred ecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc-----EEEEEEEEEcCCC
Q psy14886 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-----ISTKTTVIVEGPP 279 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-----~~~~~~l~v~~~p 279 (505)
+........ .........|.|..+. |.|.|+|.+.|..+. .+..+.|.|.++|
T Consensus 258 ~~~~~~~~~--~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 258 HERRLPAVR--KVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp CCEEEECEE--CTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred CCCceecee--ccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 532110000 0000012478888888 999999999997663 3455666666554
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=246.03 Aligned_cols=282 Identities=16% Similarity=0.156 Sum_probs=118.1
Q ss_pred CCC--CceEEEEEEeccCCCeEEEEEC--CEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 2 DNQ--ADLTWTCEAFGVPDVTYSWFRN--GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 2 ~~G--~~~~l~C~~~~~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.+| +.++|.|.+.+ |.+.++|+|+ +..+... ...........|.|.+++ .+|+|.|+|.+.+......+
T Consensus 139 ~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~s 211 (772)
T 3v2a_R 139 TENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPD-----GNRISWDSKKGFTIPSYM-ISYAGMVFCEAKINDESYQS 211 (772)
T ss_dssp ESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCC-----SSSCEEETTTEEEEEGGG-TTTCSEEEEEEEETTEEEEC
T ss_pred ecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCC-----CceeecCCCCCeEecCCC-hhhCeEEEEEEEECCceEEE
Confidence 468 88999999976 7789999997 6655421 111222345789999999 99999999999875443333
Q ss_pred e-EEEEEEec-CCCccCCCCCceEEeeCCCeEEEEeecCC--CCCCeEEEEECCEEecCCCcEE-----------EeeCC
Q psy14886 78 S-AQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNPEA--APKPKFVWKKDGNIIGSGGRRK-----------IFENG 142 (505)
Q Consensus 78 ~-~~l~v~~~-~p~~~~~~~~~~~~v~~g~~v~l~C~~~~--~p~~~i~W~~~g~~~~~~~~~~-----------~~~~~ 142 (505)
. ..+.+... ++.+.+.+ .....+.+|++++|.|.+.+ .+.+.+.|++++..+....... .....
T Consensus 212 ~~~~~~v~~~~~~~v~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (772)
T 3v2a_R 212 IMYIVVVVGYRIYDVVLSP-SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 290 (772)
T ss_dssp CEEEEEEECCCEEEEEEEC-CSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEE
T ss_pred EEEEEEEecCccceeeeCC-CCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEE
Confidence 3 33333321 12222322 23357899999999999976 4466999999988754322211 11234
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeC--CCceEEEeeccEEEEEEeeecCCCCeEEEEEeCC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~ 220 (505)
.|.|.++..+|+|.|+|.+.|..+.....+.|.|..+|.+.... .....+..|+.+.|.|.+.+.|.+ .+.|+++|
T Consensus 291 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~g 368 (772)
T 3v2a_R 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP--EIKWYKNG 368 (772)
T ss_dssp EEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------------------------
T ss_pred EEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC--eEEEEECC
Confidence 69999999999999999999998888888889998776554322 234567889999999999987765 45699998
Q ss_pred EEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE--EEEEEEEEcCCCCCCCc----eEEEEEeCCe
Q psy14886 221 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLPGG----VQVVEVHKTS 294 (505)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~--~~~~~l~v~~~p~~p~~----~~~~~~~~~~ 294 (505)
..+.... .. .....|.|..+..+|.|.|+|.|.|..|.. +..+.|.|..+|..... .......+..
T Consensus 369 ~~l~~~~-------~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~ 440 (772)
T 3v2a_R 369 IPLESNH-------TI-KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCCCc-------eE-ccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCc
Confidence 8775421 11 134689999999999999999999998865 44566777766654321 1011345667
Q ss_pred EEEEeec
Q psy14886 295 ATIQWTD 301 (505)
Q Consensus 295 v~l~w~~ 301 (505)
+.|.|..
T Consensus 441 ~~l~C~~ 447 (772)
T 3v2a_R 441 QTLTCTV 447 (772)
T ss_dssp -------
T ss_pred EEEEeEe
Confidence 7888874
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=212.35 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=196.6
Q ss_pred eCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 185 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
..|....+..|++++|.|.+. . + .+.|.++|..+... ........|.|.++...|.|.|.|.+.+ .
T Consensus 208 v~P~~~~v~~Gs~vtl~C~a~-~--~--~I~W~~ng~~i~~~--------ri~~~~~~L~I~nl~~sd~g~y~~~C~~-~ 273 (488)
T 2q7n_A 208 VFPQDKVVLAGSNMTICCMSP-T--K--VLSGQIGNTLRPLI--------HLYGQTVAIHILNIPVSENSGTNIIFIT-D 273 (488)
T ss_dssp EECTTCEEESSCCCEEEECCS-S--C--EEEEEETTEECCCE--------ECSSSCEEEECCSCCCCCSSCEEEEEEE-S
T ss_pred ECCCCCEEcCCCCEEEEEECC-C--C--EEEEEECCEECchh--------hccceEEEEEEeCCCcccCCcEEEEEEc-C
Confidence 446667789999999999987 2 2 67799999776442 1222345788999998888888777663 2
Q ss_pred CcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCC---CCCceEEEEEEeCCCC-CeEEeeeccccceeeeec
Q psy14886 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG---RPITHYKIIARTNWNS-TWFNVSEHVIGKEVDRYT 340 (505)
Q Consensus 265 g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~---~~i~~y~v~~~~~~~~-~w~~~~~~~~~~~~~~~~ 340 (505)
+ ......+.+..+|.+|.++.+.......++++|.++.+.+ .++..|.+.|+..+.. .|..... ..
T Consensus 274 ~-~i~~~~l~v~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~---------~~ 343 (488)
T 2q7n_A 274 D-DVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEG---------LT 343 (488)
T ss_dssp S-CEEEEEEEEECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSC---------CC
T ss_pred C-eEEEEEEEeeCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccc---------cC
Confidence 3 3346788888999999999998888899999999987653 4678999998765321 2221110 00
Q ss_pred CceeeEEeeeccC-CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCC
Q psy14886 341 GRKEASIENVLVP-WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419 (505)
Q Consensus 341 ~~~~~~~~~~L~~-~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i 419 (505)
+........ +.+ .+.|.|+|.|.|..|.++ +. ..+.+....++.||.++++...+.+++.|+|++| ...++.+
T Consensus 344 ~~~~~ct~~-l~~~~t~Y~f~V~A~N~~G~~~-S~--~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP--~~~~g~~ 417 (488)
T 2q7n_A 344 NETYRLGVQ-MHPGQEIHNFTLTGRNPLGQAQ-SA--VVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP--GNFTKIN 417 (488)
T ss_dssp SSCEEEEEE-CCSSCCCCEEEEEEEETTEEEE-EE--EECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEE--EECSSSE
T ss_pred CceEEEEEc-CCCCccEEEEEEEEEeCCCCcc-ce--EEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCC--CCCCCcc
Confidence 122223344 555 599999999999999954 32 2455556677889999999888889999999994 4457889
Q ss_pred ceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCC---CCCCceEEEeecce
Q psy14886 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP---GPESEVVTIWHDPL 487 (505)
Q Consensus 420 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~---g~~s~~~~~~t~p~ 487 (505)
+.|.|+|+..+...|...............+.|.+|.|++.|.|+|+|.| .|. |++|+.+.+.|.+.
T Consensus 418 l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~ 487 (488)
T 2q7n_A 418 LLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEA 487 (488)
T ss_dssp EEEEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCC
T ss_pred eEEEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCC
Confidence 99999999988666643221111112233448999999999999999999 888 57787777877653
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-27 Score=224.47 Aligned_cols=263 Identities=14% Similarity=0.209 Sum_probs=172.4
Q ss_pred CCCceEEEEEEec-cCCC-eEEEEECCEECcCCC-----CCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 3 NQADLTWTCEAFG-VPDV-TYSWFRNGELLNSET-----LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p~~-~~~W~~~~~~l~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+|+.++|.|.+.+ .|.+ .|+|+|+|.++.... ......+.+. ..+.|.|.+++ .+|+|.|+|.|.|..+..
T Consensus 130 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~-~~d~G~Y~C~a~n~~~~~ 207 (438)
T 1qgc_4 130 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS-MSSTLTLTKDE-YERHNSYTCEATHKTSTS 207 (438)
T ss_dssp HTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEE-EEEEEEEEHHH-HHTCCEEEEEEEETTCSS
T ss_pred cCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEE-EEEEEEEeCcc-cCCCCeEEEEEEecccCC
Confidence 3789999999987 6766 999999999886430 0001112222 24589999999 999999999999987764
Q ss_pred EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEec-----------------CCC
Q psy14886 76 YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-----------------SGG 134 (505)
Q Consensus 76 ~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~~-----------------~~~ 134 (505)
. +.+.+....+.+.+.. +....+.+|++++|.|.+.+.| .+.+.|+++ +..+. ...
T Consensus 208 ~--~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 1qgc_4 208 P--IVKSFNRNECEVMLVE-SGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKG 284 (438)
T ss_dssp C--EEEEEETTC-CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTT
T ss_pred c--eecccccccceeEEec-CCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCC
Confidence 2 2333332112111111 2345689999999999999887 679999996 44321 124
Q ss_pred cEEEeeC-----CCEEEcCCCCCCCEEEEEEEEcCCC-----ceeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEE
Q psy14886 135 RRKIFEN-----GNLLISPVSRDDSGIYSCTATNVHG-----MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQL 200 (505)
Q Consensus 135 ~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l 200 (505)
++.+..+ ..|.|.+++.+|+|.|+|.|.|..+ .......+.|.. +|.+... ++...+..|+.+.|
T Consensus 285 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L 363 (438)
T 1qgc_4 285 RFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPL-APGSAAAAASMVTL 363 (438)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEE-CCCGGGCCSSEEEE
T ss_pred cEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEc-CcccccccCCcEEE
Confidence 4444432 2699999999999999999998443 222345677753 3333322 22334567999999
Q ss_pred EEEeeec-CCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 201 RCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 201 ~C~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
.|.+.+. |. .+.+.|++++..+.................+.|.|.....+| |.|+|.|.|..|.......+
T Consensus 364 ~C~~~g~~P~-~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 364 GCLVKGYFPE-PVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEESCBSS-CCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEeccccCC-CcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence 9999987 44 357889998876542110000000111112367888877778 99999999999986655443
|
| >2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=189.07 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=158.7
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceee--eecCceeeEEeeeccCCc
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVD--RYTGRKEASIENVLVPWS 355 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~ 355 (505)
+.+|..+.+..++.+++.|+|+++...++++.+|.|+++..+. ..|......+...... ........+.+.+|.+++
T Consensus 2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 81 (214)
T 2ibg_A 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH 81 (214)
T ss_dssp CCCCCCCEEEEEETTEEEEEEEEECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTC
T ss_pred CCCCCCCEeeEecCCEEEEEEECCCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCC
Confidence 4567778888899999999999998777899999999998754 7888765432210000 000122333444599999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCC---CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC-
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPA---DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND- 431 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~---~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~- 431 (505)
.|.|+|.|.|..|.+..+.....+.+.. ..++.+|.++.+...+.++|.|.|++++ .+.++.+.+|.|+|+..+.
T Consensus 82 ~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~ 160 (214)
T 2ibg_A 82 TYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSSSA 160 (214)
T ss_dssp EEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEEEETTCC
T ss_pred EEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCC-ccCCCCcceEEEEEEECCCC
Confidence 9999999999999987777554444443 3455678999998888999999999954 5788999999999999885
Q ss_pred CCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 432 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
..|........ ....+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|..+
T Consensus 161 ~~~~~~~~~~~---~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~p 213 (214)
T 2ibg_A 161 GEYFKATIEGA---HARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRP 213 (214)
T ss_dssp SCCEEEEEECT---TCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECCCC
T ss_pred cceEEeeccCC---cceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEecCC
Confidence 67886655431 235788999999999999999999999999999999998754
|
| >3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=190.04 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=151.6
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCC----CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATN----GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~----~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
.|+.+|.++.+.....+++.|+|++|... +.++.+|.|+|+..+...|....... ....+.+.+ |.
T Consensus 3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~ 72 (211)
T 3p4l_A 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANA---------TTLSYLVTG-LK 72 (211)
T ss_dssp CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEEEE---------SSSEEEECS-CC
T ss_pred CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEeCC---------CceEEEecC-cC
Confidence 46778999999999999999999987532 57789999999887544332211111 223455555 99
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc--ccccEEEEEEeCCccccCCCCceEEEEEEEcC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKN 430 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~--~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~ 430 (505)
|++.|.|+|+|.|..|.+.+|... .+.|.+..|+.+|.++.+... +.++|.|.|++ +.+.+|.+.+|.|+|+..+
T Consensus 73 p~t~Y~~~V~A~n~~g~~~~S~~~-~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~ 149 (211)
T 3p4l_A 73 PNTLYEFSVMVTKGRRSSTWSMTA-HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDV 149 (211)
T ss_dssp TTCEEEEEEEEEETTEECCCCCCE-EEECCCCCCCSCCEEEEEEEETTEEEEEEEEEEC--CTTCCSCCCEEEEEEESCT
T ss_pred CCCEEEEEEEEEcCCCCCccceeE-eeecccCCCCCCCcceEEEecCCCCCEEEEEECC--CCCCCCCEEEEEEEEEECC
Confidence 999999999999999999888764 678888888889999998766 47899999998 4568889999999999876
Q ss_pred CC---CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecceEE
Q psy14886 431 DT---EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPLVI 489 (505)
Q Consensus 431 ~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~~~ 489 (505)
.. .|....... ..+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.+...-+
T Consensus 150 ~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~~~ 207 (211)
T 3p4l_A 150 NAEIHDWVIEPVVG----NRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHH 207 (211)
T ss_dssp TSCGGGSEEEEEES----SCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC----
T ss_pred CCCCCceEEEEecC----CeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCccccc
Confidence 43 344333332 34678999999999999999999999999999999998865443
|
| >2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=190.18 Aligned_cols=201 Identities=23% Similarity=0.259 Sum_probs=154.9
Q ss_pred EEEcCCCCCCCceEEEEEeCCeEEEEeecCCCC-CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeec
Q psy14886 273 VIVEGPPGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL 351 (505)
Q Consensus 273 l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~-~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L 351 (505)
+....+|.+|.++.+..... ++.|+|+++... +.++.+|.|+|+..+...|......... ......+.+.+ |
T Consensus 3 l~~~~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~-L 75 (209)
T 2vkw_A 3 LAQADTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE-----ASMEGIVTIVG-L 75 (209)
T ss_dssp --CCCCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHH-----HHHHSEEEECC-C
T ss_pred ccccCCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccC-----CCccceEEeCC-C
Confidence 44567899999999877776 699999998754 4569999999999888888775432110 00122444544 9
Q ss_pred cCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC
Q psy14886 352 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND 431 (505)
Q Consensus 352 ~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~ 431 (505)
.|++.|.|+|+|.|..|.|.++... .+.|.+..+|.+|.++.+...+.++|.|.|++ +.+.+++|.+|.|+|+. +.
T Consensus 76 ~p~t~Y~~~V~A~n~~G~~~~s~~~-~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~-~~ 151 (209)
T 2vkw_A 76 KPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKLEGQMGEDGNSIKVNLIK--QDDGGSPIRHYLVRYRA-LS 151 (209)
T ss_dssp CTTCEEEEEEEEEETTEECCCCCCE-EEECCCSCSCCCCEEEEEECTTSSCEEEEEEC--CCCTTSCCCEEEEEEEE-TT
T ss_pred CCCCeEEEEEEEEcCCcccCCcccc-cccccCCCCCCCCcccccccccCCeEEEEEEC--cccCCCCCceEEEEEEC-CC
Confidence 9999999999999999999888764 46666664667888888888889999999998 47889999999999999 54
Q ss_pred CCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 432 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
..|....... ...+.+.|.+|.|++.|.|+|+|+|.+|.|++|+++.+.+.-.
T Consensus 152 ~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~~~ 204 (209)
T 2vkw_A 152 SEWKPEIRLP---SGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAH 204 (209)
T ss_dssp SCCCCCEEEC---TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC---
T ss_pred CCCceeeecC---CCccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhhhh
Confidence 5565433221 1335788999999999999999999999999999998876543
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-24 Score=190.82 Aligned_cols=264 Identities=21% Similarity=0.326 Sum_probs=190.9
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+|.+...+ ....+.+|+.++|.|.+.+.|.+.+.|+++|..+....++.... ...|.|.+++..|+|.|+|.+.|
T Consensus 5 pP~~~~~p--~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCEEEECC--CCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEccc--cceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 56665554 45678999999999999999889999999999987766554432 24699999999999999999999
Q ss_pred CCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeE
Q psy14886 164 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243 (505)
Q Consensus 164 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (505)
..|.....+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+ .+.|++++..+....... .........|
T Consensus 83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~~~~~~~~---~~~~~~~~~L 157 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI--KVLWYKDETEIQESSKFR---MSFVESVAVL 157 (284)
T ss_dssp TTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCC--EEEEEETTEECCCSSSEE---EEEETTEEEE
T ss_pred CCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCC--EEEEEECCEECcCCCcEE---EEEcCCEEEE
Confidence 99888888999998888877665566678899999999999887654 677999998876532100 1111234579
Q ss_pred EEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCce-EEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeC---
Q psy14886 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV-QVVEVHKTSATIQWTDGATNGRPITHYKIIARTN--- 319 (505)
Q Consensus 244 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~-~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~--- 319 (505)
.|..+..+|.|.|+|.|.|..|.....+.|.|..+|...... ......+..+.|.|... +.|...+.|.....
T Consensus 158 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~~~v~W~~~~~~~~ 234 (284)
T 2rik_A 158 EMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ---GTPPFQVSWHKDKRELR 234 (284)
T ss_dssp EECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECB---SSSCCEEEEEETTEEEC
T ss_pred EECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEE---ecCCCEEEEEECCEECc
Confidence 999999999999999999999999999999998877543222 12344677899999842 33333344332110
Q ss_pred CCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 320 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 320 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
........ .......+.+.+ +...+.+.|+|.|.|..|...
T Consensus 235 ~~~~~~~~----------~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~ 275 (284)
T 2rik_A 235 SGKKYKIM----------SENFLTSIHILN-VDSADIGEYQCKASNDVGSYT 275 (284)
T ss_dssp BTTTEEEE----------EETTEEEEEECS-CCGGGCEEEEEEEEETTEEEE
T ss_pred CCCCEEEE----------EcCCEEEEEEcC-CCcccCEEEEEEEEeCCCcee
Confidence 00111100 001112344444 889999999999999999753
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=208.18 Aligned_cols=268 Identities=14% Similarity=0.174 Sum_probs=164.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc-------CC---CCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN-------SE---TLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~-------~~---~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|+. ..+. .. .......+|+.+. ..+|.|.+++ .+|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 91 (475)
T 1iga_A 13 KKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR-PED 91 (475)
T ss_pred EeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCC-hhh
Confidence 46899999999998754 5789999953 2110 00 0001124566653 2489999999 999
Q ss_pred CeEEEEEEEcccCc------eEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-C-eEEEEECCE
Q psy14886 61 PAMYQCRAKNQLKT------RYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-P-KFVWKKDGN 128 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~------~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~-~i~W~~~g~ 128 (505)
+|.|.|.+.+..+. ....+.|.|... +|.+.... .. .+.+|+.++|.|.+.|. |. + .|.|++++.
T Consensus 92 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~--~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~ 168 (475)
T 1iga_A 92 TAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-LC--STQPDGNVVIACLVQGFFPQEPLSVTWSESGQ 168 (475)
T ss_pred CEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-cc--ccCCCCeEEEEEEEeeecCCCceEEEEcCCCc
Confidence 99999999987652 123456777631 23333221 11 23689999999999987 65 4 999999875
Q ss_pred EecCC--CcE------EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce-eeeEEEEEE------------------eCCe
Q psy14886 129 IIGSG--GRR------KIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIVL------------------HGPS 181 (505)
Q Consensus 129 ~~~~~--~~~------~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~-~~~~~l~v~------------------~~p~ 181 (505)
..... ... .......|.|..+...|+|.|+|.|.|..+.. ...+.+.|. ..|.
T Consensus 169 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~ 248 (475)
T 1iga_A 169 GVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPR 248 (475)
T ss_pred ccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcE
Confidence 32110 000 00111247888888899999999999987642 122332221 1222
Q ss_pred eeeeCCCceEEEeeccEEEEEEeeecCC-CCeEEEEEeCCEEecCCC-CCc-ccCCeeeecCCeEEEecCCCCCCEEEEE
Q psy14886 182 YYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMD-LNE-LETPNINIDGGLLEITNASFADAGEYEC 258 (505)
Q Consensus 182 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C 258 (505)
+....+....+..|+.+.|.|.+.+.++ ..+.+.| ++..+.... ... ..........+.|.|..+..+|.|.|+|
T Consensus 249 v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C 326 (475)
T 1iga_A 249 LSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTC 326 (475)
T ss_pred EEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEE
Confidence 2222222333578999999999997643 1257889 333332211 000 0000011134578999999999999999
Q ss_pred EEEecCCcEEEEEEEE
Q psy14886 259 VVKSTVGKISTKTTVI 274 (505)
Q Consensus 259 ~~~n~~g~~~~~~~l~ 274 (505)
.|.|..|.......+.
T Consensus 327 ~a~n~~~~~~~~~~v~ 342 (475)
T 1iga_A 327 TAAYPESKTPLTATLS 342 (475)
T ss_pred EEEcCCCCCceEEEee
Confidence 9999988764444443
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-26 Score=218.27 Aligned_cols=263 Identities=17% Similarity=0.226 Sum_probs=170.1
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc---C----C---CCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN---S----E---TLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~---~----~---~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|++ ..+. . . .......+|+.+. ..+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 90 (444)
T 1igt_B 12 VQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLK-SED 90 (444)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCC-HHH
Confidence 46899999999998754 5789999852 2210 0 0 0000123577653 2489999999 999
Q ss_pred CeEEEEEEEcccCce---EeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecC
Q psy14886 61 PAMYQCRAKNQLKTR---YSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS 132 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~---~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~ 132 (505)
+|.|+|.+.+..+.. ...+.|.|... +|.+...... ..+.+|+.+.|.|.+.|. |.+ .+.|++++..+..
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~ 168 (444)
T 1igt_B 91 TAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV--CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 168 (444)
T ss_dssp CEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC--SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred CEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc--ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCe
Confidence 999999999865441 12456666631 2332221111 124789999999999885 766 9999998875311
Q ss_pred --CCcE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE------------------eCCeeeeeCCC
Q psy14886 133 --GGRR----KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL------------------HGPSYYEQLPP 188 (505)
Q Consensus 133 --~~~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~------------------~~p~~~~~~~~ 188 (505)
.... .....+.|.|.++..+| |.|+|.|.|..+.......+.+. .+|.+....+.
T Consensus 169 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~ 247 (444)
T 1igt_B 169 HTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPK 247 (444)
T ss_dssp EECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCC
T ss_pred EecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCc
Confidence 1110 11112458899999889 99999999998876444443321 12333233232
Q ss_pred ceE-EEeeccEEEEEEeeecC--CCCeEEEEEeCCEEecCCCCCcc--cCCeeeecCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 189 KIT-IAAHRNLQLRCSAHTEE--LLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 189 ~~~-~~~g~~~~l~C~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
... +..|+.+.|.|.+.+.+ ++.+.+.|++++..+........ .........+.|.|..+..+|.|.|+|.|.|.
T Consensus 248 ~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 327 (444)
T 1igt_B 248 IKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK 327 (444)
T ss_dssp HHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT
T ss_pred hhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcC
Confidence 222 47799999999999885 44567889999988754211000 00000112347889999899999999999999
Q ss_pred CCcE
Q psy14886 264 VGKI 267 (505)
Q Consensus 264 ~g~~ 267 (505)
.|..
T Consensus 328 ~~~~ 331 (444)
T 1igt_B 328 DLPA 331 (444)
T ss_dssp TCSS
T ss_pred CCCC
Confidence 8875
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=224.62 Aligned_cols=428 Identities=10% Similarity=0.047 Sum_probs=249.7
Q ss_pred CCCCCceEEEEEEe-------ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAF-------GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~-------~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|++++|.|.+. +.+.+.|.|++|++.+...... .+....+.|.|.++. ..|+| |+|.+... +
T Consensus 15 v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~-----~~~~~~~~l~i~~~~-~~~~~-y~C~~~~~-~ 86 (589)
T 3l5h_A 15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYT-----IINRTASSVTFTDIA-SLNIQ-LTCNILTF-G 86 (589)
T ss_dssp CCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCB-----CCSSSCCBCCCCCCC-SSCCC-CCCC-CCT-T
T ss_pred EeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHcc-----ccCCcEeEEEEecCC-Cccee-eEEecccC-C
Confidence 57899999999997 5567899999999877643111 111124689999999 77765 77887531 2
Q ss_pred ce---EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-----------
Q psy14886 74 TR---YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------- 139 (505)
Q Consensus 74 ~~---~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----------- 139 (505)
.. ...+.|.|.. +| +....|.|...+.....+.|....... ....+.+.
T Consensus 87 ~~~~~~~~~~l~v~~-pP---------------~~P~nl~c~~~~~~~~~~~W~~~~~~~-~~~~y~l~~~~~~~~~~~c 149 (589)
T 3l5h_A 87 QLEQNVYGITIISGL-PP---------------EKPKNLSCIVNEGKKMRCEWDGGRETH-LETNFTLKSEWATHKFADC 149 (589)
T ss_dssp CC-CCCCCCCCCC-C-CC---------------CCCEEEEEEEETTSCEEEEEECCSCCS-SCEEEEECCBCSSSBCCCE
T ss_pred CcccEEEeEEEeccC-CC---------------CCCEeeEEEECCCceEEEEECCCCcCC-cCceEEEEEEEcCCCcccC
Confidence 21 1122333321 22 334467777666556677776532110 00111111
Q ss_pred --e---CCCEEEc-CCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEE----eeccEEEEEEeeec-
Q psy14886 140 --E---NGNLLIS-PVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIA----AHRNLQLRCSAHTE- 207 (505)
Q Consensus 140 --~---~~~l~i~-~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~----~g~~~~l~C~~~~~- 207 (505)
. .....+. .+.......|+|.|.|..|..... ..+.+.. .....++....+. ....+.|.|.....
T Consensus 150 ~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~--~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~ 227 (589)
T 3l5h_A 150 KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY--KVKPNPPHNLSVINSEELSSILKLTWTNPSIK 227 (589)
T ss_dssp ECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGG--SEECCCCCSCEEECTTTCTTCEEEECCCCGGG
T ss_pred CCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEcccc--EEEcCCCceEEEEecCCCCCeEEEEeCCCCCC
Confidence 0 0122333 334445567889999998875332 2221111 0011123333342 23568888875432
Q ss_pred --CCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE-----EEEEEE-EcCCC
Q psy14886 208 --ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS-----TKTTVI-VEGPP 279 (505)
Q Consensus 208 --~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-----~~~~l~-v~~~p 279 (505)
+...+.+.|...+.. .+..............+.+..+.....+.|+..|.|..|... ..+.+. ....|
T Consensus 228 ~~~~~~Y~v~~~~~~~~----~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P 303 (589)
T 3l5h_A 228 SVIILKYNIQYRTKDAS----TWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 303 (589)
T ss_dssp GTSCEEEEEEEEETTCS----CCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCC
T ss_pred CeeeEEEEEEECCCCCC----CcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCC
Confidence 112234445443311 111110011112345788899998889999999998876531 222111 12334
Q ss_pred -CCCCceEEE----EEeCCeEEEEeecC--CCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 280 -GLPGGVQVV----EVHKTSATIQWTDG--ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 280 -~~p~~~~~~----~~~~~~v~l~w~~~--~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
.+|..+... ..+..++.|.|+++ .+.++.+.+|.|.++.... .|.... .. ...+.. |.
T Consensus 304 ~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~-~~~~~~------------~~-~~~~~~-l~ 368 (589)
T 3l5h_A 304 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-HLQNYT------------VN-ATKLTV-NL 368 (589)
T ss_dssp CSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTS-CCCBCC------------CS-SSCCEE-CC
T ss_pred CCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCC-Cceeec------------cC-CceEEE-Ee
Confidence 345444433 34568999999974 3567889999999876543 332211 11 122233 88
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~ 432 (505)
+++.|.|+|.|.|..|.|+++.. .+.+....++.||.++.+... .+++.|.|+++. . .+.+|.|+|+..+..
T Consensus 369 ~~~~Y~~~V~A~n~~G~~~~s~~--~~~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~--~---~i~~Y~v~~~~~~~~ 440 (589)
T 3l5h_A 369 TNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHPVMDLKAFPK-DNMLWVEWTTPR--E---SVKKYILEWCVLSDK 440 (589)
T ss_dssp CSSCCCEEEEEEBTTBCCCCCCC--CCCCTTCCCCSCCCSCEEEEC-SSSEEEECCCCS--S---CCSCBCCEEEEECSS
T ss_pred CCCCEEEEEEEEeCCccCCCeEE--EeecccccCCCCcceEEEEEC-CCeEEEEEECCC--C---CccEEEEEEEECCCC
Confidence 99999999999999999988764 333333455667778877654 689999999842 2 799999999997743
Q ss_pred CcE-EEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 433 EFQ-SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 433 ~~~-~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
... ...... .......+.+.+|.|++.|.|+|.|+|..|.|.++.+ .+.|
T Consensus 441 ~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~-~~~t 491 (589)
T 3l5h_A 441 APCITDWQQE-DGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI-KAYL 491 (589)
T ss_dssp SCCCEEECCB-CSSCCEEECCSCCCSSSEEEEEECBEETTEECCCEEE-EEES
T ss_pred CCCccCcEEe-eCCcceEEehhccccCcEEEEEEEEEeCCcccCCEEE-EEEe
Confidence 210 011111 1223456778999999999999999999999998643 3334
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=213.82 Aligned_cols=259 Identities=17% Similarity=0.284 Sum_probs=161.9
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc---C----C---CCCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN---S----E---TLPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~---~----~---~~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|+ +..+. . . .......+|+.+.. .+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 90 (457)
T 1hzh_H 12 KKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR-SAD 90 (457)
T ss_dssp ECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCC-ccc
Confidence 46899999999998865 678999994 22110 0 0 00011245776531 389999999 999
Q ss_pred CeEEEEEEEcccC------------ceEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEE
Q psy14886 61 PAMYQCRAKNQLK------------TRYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVW 123 (505)
Q Consensus 61 ~G~Y~C~~~~~~~------------~~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W 123 (505)
+|.|+|.+.+..+ .....+.|.|... +|.+...+ ....+.+|+.++|.|.+.+. |. +.+.|
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 168 (457)
T 1hzh_H 91 TAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSW 168 (457)
T ss_dssp CEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEEC--CCSCCCTTCCEEEEEEEESBBSCCCEEEE
T ss_pred CEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecC--ccccccCCCcEEEEEEEeEEeCCCeEEEE
Confidence 9999999998764 1223456777642 23332221 11235789999999999887 64 79999
Q ss_pred EECCEEecCCCc-EEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe-----------------C
Q psy14886 124 KKDGNIIGSGGR-RKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH-----------------G 179 (505)
Q Consensus 124 ~~~g~~~~~~~~-~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~-----------------~ 179 (505)
++++..+..... .....+ ..|.|.++..+| |.|+|.|.|..+.......+.+.. .
T Consensus 169 ~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 247 (457)
T 1hzh_H 169 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGG 247 (457)
T ss_dssp TTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSS
T ss_pred EeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCC
Confidence 999864321100 011112 258999999989 999999999876654444333221 2
Q ss_pred CeeeeeCCCceE-EEeeccEEEEEEeeecCCC--CeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEec---CCCCC-
Q psy14886 180 PSYYEQLPPKIT-IAAHRNLQLRCSAHTEELL--DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN---ASFAD- 252 (505)
Q Consensus 180 p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~~- 252 (505)
|.+....+.... +..|+.+.|.|.+.+.+++ .+.+.|++++..+..... .......++.+.+.. +...+
T Consensus 248 p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~----~~~~~~~~g~~~~~~~l~i~~~d~ 323 (457)
T 1hzh_H 248 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----KPREEQYNSTYRVVSVLTVLHQDW 323 (457)
T ss_dssp CEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEE----EEEEECTTSCEEEEEEECCCHHHH
T ss_pred ceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccc----ccceecCCCcEEEEEEEEECHHHc
Confidence 332122222222 4569999999999987543 357889999988753210 001112233343332 33444
Q ss_pred --CEEEEEEEEecCCcE
Q psy14886 253 --AGEYECVVKSTVGKI 267 (505)
Q Consensus 253 --~g~y~C~~~n~~g~~ 267 (505)
.|.|+|.|.|..+..
T Consensus 324 ~d~G~Y~C~a~n~~~~~ 340 (457)
T 1hzh_H 324 LNGKEYKCKVSNKALPA 340 (457)
T ss_dssp HHTCCEEEEEECTTSSS
T ss_pred cCCCcEEEEEeCCCCCC
Confidence 999999999876654
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-26 Score=208.65 Aligned_cols=258 Identities=16% Similarity=0.254 Sum_probs=161.2
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEEC--CEECcC-------C---CCCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRN--GELLNS-------E---TLPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~--~~~l~~-------~---~~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+. +.+.|.|+|+ +..+.. . .......+|+.+.. .+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 90 (344)
T 1za6_B 12 VKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR-SED 90 (344)
T ss_dssp ECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC-ccc
Confidence 4689999999999876 3688999996 332210 0 00001245676532 489999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEec----
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIG---- 131 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~---- 131 (505)
+|.|+|.+.|..+.....+.|.|... +|.+...+ +...+.+|+.++|.|.+.|. |. +.+.|+++|..+.
T Consensus 91 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~ 168 (344)
T 1za6_B 91 TAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF 168 (344)
T ss_dssp CEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEEC--CSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEEC
T ss_pred CEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEcc--ccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeEC
Confidence 99999999985444444567777632 23322211 11225789999999999886 64 6999999987532
Q ss_pred -----CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE------------------------EEeCCee
Q psy14886 132 -----SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI------------------------VLHGPSY 182 (505)
Q Consensus 132 -----~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~------------------------v~~~p~~ 182 (505)
.+.++.. ...|.|.++..+| |.|+|.|.|..+.......+. +..+|.+
T Consensus 169 ~~~~~~~~~~~~--~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v 245 (344)
T 1za6_B 169 PAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQV 245 (344)
T ss_dssp CCEECTTSCEEE--EEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCEE
T ss_pred CCeECCCCCEEE--EEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCEE
Confidence 1111111 2258888888878 999999999877643332221 1123333
Q ss_pred eeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEE
Q psy14886 183 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECV 259 (505)
Q Consensus 183 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 259 (505)
....+... ...|..+.|.|.+.+.+++.+.+.|.++|..+....... ..... ....+.|.+.....++.|.|+|.
T Consensus 246 ~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~-~~~~s~l~i~~~~~~~~g~YtC~ 323 (344)
T 1za6_B 246 YTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCS 323 (344)
T ss_dssp EEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSC-EEEEEEEEECHHHHHTTCEEEEE
T ss_pred EEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCc-EEEEEEEEEChHHccCCCeEEEE
Confidence 33222222 224667999999999766667889999987765321000 00000 00112344555455679999999
Q ss_pred EEecCCc
Q psy14886 260 VKSTVGK 266 (505)
Q Consensus 260 ~~n~~g~ 266 (505)
|.|....
T Consensus 324 a~~~~l~ 330 (344)
T 1za6_B 324 VMHEALH 330 (344)
T ss_dssp EECTTST
T ss_pred EEcCCCC
Confidence 9997654
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=181.22 Aligned_cols=170 Identities=20% Similarity=0.358 Sum_probs=140.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-CC---eEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DN---VLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-~~---~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+. ...++.+. .+ +|.|.+++ .+|+|.|+|.+.|..+...
T Consensus 19 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~~~~~ 90 (197)
T 3lcy_A 19 TKLGEAAQLSCQIVGRPLPDIKWYRFGKELI-------QSRKYKMSSDGRTHTLTVMTEE-QEDEGVYTCIATNEVGEVE 90 (197)
T ss_dssp EETTSEEEEEEEEEEESCCEEEEEETTEEEC-------CCSSEEEEESSSEEEEEEECCS-GGGCEEEEEEEECSSCEEE
T ss_pred EeCCCcEEEEEEEecCCCCEEEEEECCEECC-------CCccEEEEeCCCEEEEEEecCC-ccCCEEEEEEEECCCCcee
Confidence 3589999999999998999999999999886 33445442 22 89999999 9999999999999888888
Q ss_pred eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCC-C
Q psy14886 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSR-D 152 (505)
Q Consensus 77 ~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~-~ 152 (505)
..+.+.|...+......+......+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+... ..|.|.++.. +
T Consensus 91 ~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~ 170 (197)
T 3lcy_A 91 TSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKT 170 (197)
T ss_dssp EEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHH
T ss_pred EEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchh
Confidence 88888887643333332334566788999999999999999999999999999987776666554 4699999985 8
Q ss_pred CCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 153 DSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
|+|.|+|.|.|..|.....+.|.|.+
T Consensus 171 d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 171 HAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp HCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred hCceEEEEEEcCcCceEEEEEEEEec
Confidence 99999999999999998888888754
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-25 Score=206.68 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=160.9
Q ss_pred CceEEEEEEecc-C-CCeEEEEECCEECcCCCC---CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 5 ADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 5 ~~~~l~C~~~~~-p-~~~~~W~~~~~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+.++|.|.+.+. | .+.|+|+|||..+..... .....+.+. ..+.|.|..+. .+|+|.|+|.|.|..+.....+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~-~~s~l~i~~~~-~~d~g~Y~C~a~n~~~~~~~~~ 102 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAS-TQSELTLSQKH-WLSDRTYTCQVTYQGHTFEDST 102 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEE-EEEEEEEEHHH-HHTTCCEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEE-EEEEEEEcHHH-cCCCCcEEEEEEeCCCCcceee
Confidence 699999999885 4 579999999998863210 000012221 22468888888 8899999999998765443322
Q ss_pred EEEEE--ecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC---eEEEEECC-EEecCCCcEEE-------eeCCCEE
Q psy14886 80 QLRVL--TLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP---KFVWKKDG-NIIGSGGRRKI-------FENGNLL 145 (505)
Q Consensus 80 ~l~v~--~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~---~i~W~~~g-~~~~~~~~~~~-------~~~~~l~ 145 (505)
.+.+. ...|.+...+ +....+.+|+++.|.|.+.+. |.+ .|.|++++ ..+........ ...+.|.
T Consensus 103 ~~~~~~~~~~p~v~~~~-p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~ 181 (323)
T 2wqr_A 103 KKCADSNPRGVSAYLSR-PSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP 181 (323)
T ss_dssp CCCCCSSGGGCEEEECC-CCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEE
T ss_pred ecCCCCCCCCCEEEEcC-CCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEE
Confidence 21000 0112221211 122346789999999998875 555 99999964 44432211111 1223599
Q ss_pred EcCCCCCCCEEEEEEEEcCCCceeeeEEEEE----EeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCE
Q psy14886 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221 (505)
Q Consensus 146 i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 221 (505)
|.++..+|+|.|+|.|.|..+.......+.+ ..+|.+....+.... ..|+.+.|.|.+.+.+++.+.+.|+++|.
T Consensus 182 I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~l~C~~~g~~p~~~~v~W~k~g~ 260 (323)
T 2wqr_A 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWP-GSRDKRTLACLIQNFMPEDISVQWLHNEV 260 (323)
T ss_dssp CCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCT-TCTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHH-hcCCcEEEEEEeeeeeCCCcEEEEEECCE
Confidence 9999999999999999987643322222221 123433322222111 22899999999998665566889999999
Q ss_pred EecCCCCCcc----cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 222 RIGNMDLNEL----ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 222 ~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.+........ .........+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 261 ~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 261 QLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp ECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred ECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 8754321100 00001112246888888888999999999998876
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=181.81 Aligned_cols=171 Identities=26% Similarity=0.457 Sum_probs=138.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE---C--CeEEEEcCCCC-CCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ---D--NVLTIRYLNPE-RDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~---~--~~L~i~~~~~~-~d~G~Y~C~~~~~~~~ 74 (505)
|.+|++++|.|.+.+.|.+.+.|+|++..+.. ...++... + .+|.|.+++ . +|+|.|+|.+.|..+.
T Consensus 18 v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~v~-~~~d~G~Y~C~~~n~~g~ 90 (212)
T 2yd1_A 18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVR-AGRDDAPYECVAENGVGD 90 (212)
T ss_dssp EETTSCEEEEEEEECSSCCEEEEEETTEECCT------TSTTEEEEEETTTEEEEEESSCC-TTTTCSEEEEEEECSSSC
T ss_pred EecCCEEEEEEEEccCCCCeEEEEECCEECCC------CcceeEEEEcCCCeEEEEEEecC-CCCcCceEEEEEEeCCCC
Confidence 45899999999999999999999999998862 23455442 2 489999999 9 9999999999998888
Q ss_pred -eEeeEEEEEEecC------CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEc
Q psy14886 75 -RYSSAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147 (505)
Q Consensus 75 -~~~~~~l~v~~~~------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~ 147 (505)
....+.|.|...+ |.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........++.|.|.
T Consensus 91 ~~~~~~~l~V~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~ 168 (212)
T 2yd1_A 91 AVSADATLTIYEGDKTPAGFPVITQGP--GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIE 168 (212)
T ss_dssp EEEEEEEEEEECTTCSCTTCCEEEECC--CCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEEC
T ss_pred eEEeeEEEEEecccCCCCCCCeeEeCC--CceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEc
Confidence 6667888887532 3343333 346688999999999999999999999999999876433334457789999
Q ss_pred CCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCC
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGP 180 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p 180 (505)
++..+|+|.|+|.|.|..|..... +.|.|...+
T Consensus 169 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 169 NSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred cCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 999999999999999999988765 788886543
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=181.76 Aligned_cols=170 Identities=29% Similarity=0.433 Sum_probs=140.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCc-eEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKT-RYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~-~~~ 77 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.. ...++.+ .+.+|.|.+++ .+|+|.|+|.+.+..+. ...
T Consensus 19 ~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~ 91 (192)
T 2iep_A 19 ALVEEVATFMCAVESYPQPEISWTRNKILIKL------FDTRYSIRENGQLLTILSVE-DSDDGIYCCTANNGVGGAVES 91 (192)
T ss_dssp EETTSCEEEECCEEEESCCEEEEEETTEECCT------TCTTEEEEGGGTEEEESSCC-GGGCEEEEEEEECSSSCCEEE
T ss_pred eeCCCcEEEEeeCCCCCCCeEEEEECCEEccc------cCccEEEcCCccEEEEcCCC-cccCeEEEEEEEcCCCceeEe
Confidence 35899999999999989899999999998863 2345555 34579999999 99999999999998777 444
Q ss_pred eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 78 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 78 ~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
.+.+.|.. +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.....++.|.|.++..+|+|.|
T Consensus 92 ~~~l~v~~-~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 168 (192)
T 2iep_A 92 CGALQVKM-KPKITRPP--INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQY 168 (192)
T ss_dssp EEEEEEEE-EEEEEECC--CCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEE
T ss_pred EEEEEEEe-CCccccCC--cceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEE
Confidence 56777775 56555543 3467889999999999999999999999999999887777777788999999999999999
Q ss_pred EEEEEcCCCceee-eEEEEEEeCC
Q psy14886 158 SCTATNVHGMDES-KGRLIVLHGP 180 (505)
Q Consensus 158 ~C~~~~~~g~~~~-~~~l~v~~~p 180 (505)
+|.|.|..|.... .+.|.|..+|
T Consensus 169 ~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 169 RCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEEcCCCcEEEEEEEEEEEeCC
Confidence 9999999988744 4777776543
|
| >3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=179.28 Aligned_cols=191 Identities=22% Similarity=0.333 Sum_probs=152.0
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
..+|.+|.++.+.....+++.|+|+++. .++.++.+|.|+++..+...|....... ....+.+.+ |.++
T Consensus 3 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~-L~p~ 72 (197)
T 3lpw_A 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC---------HKTSWKVDQ-LQEG 72 (197)
T ss_dssp CCSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEEE---------CSSEEEECC-CCTT
T ss_pred CCCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecCC---------CccEEEEcC-CCCC
Confidence 4578999999999999999999999986 4455699999999998878887764322 233445555 9999
Q ss_pred ceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCc
Q psy14886 355 STYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF 434 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~ 434 (505)
+.|.|+|+|.|..|.+.++... .+.+.. .++.+|.++.+.....+++.|.|++ |..+.++.+.+|.|+|+..+...|
T Consensus 73 t~Y~~~V~a~~~~g~~~~s~~~-~~~t~~-~~p~~p~~~~~~~~~~~~v~l~W~~-p~~~~~~~i~~Y~v~~~~~~~~~~ 149 (197)
T 3lpw_A 73 CSYYFRVLAENEYGIGLPAETA-ESVKAS-ERPLPPGKITLMDVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGSDKW 149 (197)
T ss_dssp CEEEEEEEEEETTEECCCEECS-SCEESC-CCCCCCSCEEEEEECSSCEEEEECC-CSCCTTSCCCEEEEEEEETTCSCC
T ss_pred CEEEEEEEEEcCccccCCCCCc-cceecC-CCCCCCcccEEEeccCCeEEEEecC-CCcCCCCcccEEEEEEEeCCCCce
Confidence 9999999999999999877654 333433 3456888999888889999999998 344445699999999999887777
Q ss_pred EEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 435 QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
...... ..+.+.+.+|.|++.|.|+|+|+|..|.|++|+.....+
T Consensus 150 ~~~~~~-----~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~v~ 194 (197)
T 3lpw_A 150 ATCATV-----KVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVI 194 (197)
T ss_dssp EEEEEE-----SSSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEE
T ss_pred EEeecc-----cccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcccEe
Confidence 754432 245688999999999999999999999999997765544
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=190.43 Aligned_cols=217 Identities=18% Similarity=0.174 Sum_probs=161.6
Q ss_pred ecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC---CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCC
Q psy14886 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEG---PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 322 (505)
Q Consensus 246 ~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~---~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~ 322 (505)
..+.....+.|++.|.|..|............ +|.++.++.+.... +++.|+|+++.. ++.+|.|+|+.....
T Consensus 66 ~~l~p~t~Y~~~V~A~n~~G~s~~s~~~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~---~i~~Y~v~~~~~~~~ 141 (290)
T 3l5i_A 66 TVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE---SVKKYILEWCVLSDK 141 (290)
T ss_dssp EEEECSSCEEEEEEEEESSCBCCCEEEEECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS---CCCEEEEEEEEECSS
T ss_pred EEEcCCceEEEEEEEEcCCCCCCCceEEeecccccCCCccceeEEEeCC-CeEEEEEeCCCC---CCCcEEEEEEECCCC
Confidence 34445677888999999988754442222222 45555666665554 799999998754 789999999876543
Q ss_pred -----CeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeec
Q psy14886 323 -----TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397 (505)
Q Consensus 323 -----~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~ 397 (505)
.|..... .....++..+|.+++.|.|+|.|.|..|.|.+... ...+.+..|..+| .+.+..
T Consensus 142 ~~~~~~~~~~~~-----------~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~~~--~~~t~~~~P~~~p-~~~~~~ 207 (290)
T 3l5i_A 142 APCITDWQQEDG-----------TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI--KAYLKQAPPSKGP-TVRTKK 207 (290)
T ss_dssp SCCCCEEEEEET-----------TCSEEECCSCCCTTCEEEEEEEEEETTEECCCEEE--EEESSCCCCSSCC-CEEEEE
T ss_pred CCCCcCeEEccC-----------CCcceEEecCcCCccEEEEEEEEEeCCcccccEEE--EeEccccCCCCCC-eeeEee
Confidence 3554422 22233343459999999999999999999874222 4557777787777 566777
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
.+.++|.|.|+++++.+.+|.|.+|+|+|+..++. |....+.. ..+.+.|.+|.|++.|.|+|.|+|.+| |++|
T Consensus 208 ~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~-~~~~~~~~----~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s 281 (290)
T 3l5i_A 208 VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ETAVNVDS----SHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDG 281 (290)
T ss_dssp ECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSC-CEEEEEET----TCSEEEECSCCTTCEEEEEEEEEETTE-EEEC
T ss_pred ccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCC-eEEEEeCC----CceEEEeCCCCCCCEEEEEEEEEeCCC-CCCC
Confidence 78899999999877888999999999999997643 44333322 346789999999999999999999999 9999
Q ss_pred ceEEEeecc
Q psy14886 478 EVVTIWHDP 486 (505)
Q Consensus 478 ~~~~~~t~p 486 (505)
..+.+.|.+
T Consensus 282 ~~~~~~T~~ 290 (290)
T 3l5i_A 282 PEFTFTTPK 290 (290)
T ss_dssp CCEEEECCC
T ss_pred CceEeecCC
Confidence 999998864
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=180.64 Aligned_cols=170 Identities=29% Similarity=0.411 Sum_probs=138.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEEC--CeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD--NVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+..... ...++...+ .+|.|.+++ .+|+|.|+|.+.+..+.....
T Consensus 17 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~~~~~~~ 92 (194)
T 2a38_A 17 VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL---PGVQISFSDGRAKLTIPAVT-KANSGRYSLKATNGSGQATST 92 (194)
T ss_dssp EETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTS---TTCEEEEETTEEEEEESSCC-GGGCEEEEEEEEETTEEEEEE
T ss_pred EECCCEEEEEEEEEecCCCEEEEEECCEEcccccC---CceEEEeCCCEEEEEECCCC-cccCEEEEEEEEcCCceEeEE
Confidence 35899999999999989899999999988874321 112333333 489999999 999999999999988877777
Q ss_pred EEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCC
Q psy14886 79 AQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDD 153 (505)
Q Consensus 79 ~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d 153 (505)
+.+.|.. .+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....+.....++ .|.|.++..+|
T Consensus 93 ~~l~v~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 170 (194)
T 2a38_A 93 AELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPED 170 (194)
T ss_dssp EEEEEECCCEEEEEEECC--CCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGG
T ss_pred EEEEEccCCCCCEEEeCC--ccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhc
Confidence 7788774 244444443 3467899999999999999999999999999999877776665554 59999999999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEE
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.|.|+|.|.|..|.....+.|.|
T Consensus 171 ~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 171 SGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEE
T ss_pred CeEEEEEEEeCCCceEEEEEEEE
Confidence 99999999999998888887776
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=215.84 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=162.5
Q ss_pred CCCCceEEEEEEecc-CCC-eEEEEECCEECcCCCCCC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGV-PDV-TYSWFRNGELLNSETLPL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~~-~~~W~~~~~~l~~~~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
.+|+.++|.|.+.|. |.+ .|.|+|++..+....... ...+.+.. .+.|.|.+++ .+| |.|+|.|.|..+.....
T Consensus 136 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~s~L~i~~~~-~~d-g~Y~C~a~n~~~~~~~~ 212 (444)
T 1igt_B 136 TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL-SSSVTVTSST-WPS-QSITCNVAHPASSTKVD 212 (444)
T ss_dssp CCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE-EEEEEECSTT-TTT-SCCEEEEEETTTTEEEE
T ss_pred CCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEE-EEEEEEchhh-cCC-CeEEEEEEeCCCCcceE
Confidence 589999999999884 765 999999987642110000 01123332 3679999999 889 99999999988875444
Q ss_pred EEEEEE---------------e--cCCCccCCCCCceEEeeCCCeEEEEeecCCCC----CCeEEEEECCEEecCCCc--
Q psy14886 79 AQLRVL---------------T--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAP----KPKFVWKKDGNIIGSGGR-- 135 (505)
Q Consensus 79 ~~l~v~---------------~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~g~~~~~~~~-- 135 (505)
..+.+. . .+|.+...+......+.+|++++|.|.+.|.+ .+.+.|+++|..+.....
T Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~ 292 (444)
T 1igt_B 213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT 292 (444)
T ss_dssp EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBC
T ss_pred EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCccccc
Confidence 333221 0 12322121211111147899999999998873 369999999988754321
Q ss_pred EEEe------eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE----EEEeCCeeeeeCCCceEEEeeccEEEEEEee
Q psy14886 136 RKIF------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205 (505)
Q Consensus 136 ~~~~------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 205 (505)
.... ..+.|.|.++..+|+|.|+|.|.|..+.......+ .+..+|.+....+....+..|+ +.|.|.+.
T Consensus 293 ~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~L~C~~~ 371 (444)
T 1igt_B 293 HREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQ-VTLTCMVT 371 (444)
T ss_dssp CEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSE-EEEEEEEE
T ss_pred ceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCe-EEEEEEEE
Confidence 1111 12369999999999999999999988866333333 2223454433333222233444 99999999
Q ss_pred ecCCCCeEEEEEeCCEEecCCCCCcc--cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 206 TEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 206 ~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
+.+++.+.+.|+++|..+........ .........+.|.+.....+|.|.|+|.|.|...
T Consensus 372 g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 372 DFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp EEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred eeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 96555568889999988743110000 0000001112455555555679999999998654
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-27 Score=223.41 Aligned_cols=261 Identities=15% Similarity=0.226 Sum_probs=168.3
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc---CC-------CCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN---SE-------TLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~---~~-------~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
|.+|++++|.|.+.+.+ .+.|.|+|++ ..+. .. .......+|+.+. ..+|.|.+++ .+|
T Consensus 11 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 89 (434)
T 1igy_B 11 ARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLT-SDD 89 (434)
T ss_dssp ECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBC-GGG
T ss_pred ecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCC-hHH
Confidence 46899999999998754 6789999963 2210 00 0001123577653 2489999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecC---
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS--- 132 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~--- 132 (505)
+|.|+|.+.+..+.....+.|.|.. .+|.+.... ....+.+|+.++|.|.+.|. |.+ .+.|++++..+..
T Consensus 90 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~ 167 (434)
T 1igy_B 90 SAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF 167 (434)
T ss_dssp CSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEEC--CCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEEC
T ss_pred CEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcC--CccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEec
Confidence 9999999988544333456777763 133332211 11225789999999999886 666 9999998875310
Q ss_pred -----CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe---------C---CeeeeeCCCceE-EEe
Q psy14886 133 -----GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH---------G---PSYYEQLPPKIT-IAA 194 (505)
Q Consensus 133 -----~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~---------~---p~~~~~~~~~~~-~~~ 194 (505)
...+. ..+.|.|.++..+| |.|+|.|.|..+.......+.+.. . |.+....+.... +..
T Consensus 168 ~~~~~~~~~~--~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~ 244 (434)
T 1igy_B 168 PAVLQSDLYT--LSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLI 244 (434)
T ss_dssp CCEECSSCEE--EEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHST
T ss_pred CceecCCcEE--EEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhccc
Confidence 11111 12358898998888 999999999988754444332210 0 333222222222 678
Q ss_pred eccEEEEEEeeecCC--CCeEEEEEeCCEEecCCCCCcc--cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 195 HRNLQLRCSAHTEEL--LDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 195 g~~~~l~C~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
|+.+.|.|.+.+.++ +.+.+.|++++..+........ .........+.|.|..+..+|.|.|+|.|.|..|..
T Consensus 245 G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 321 (434)
T 1igy_B 245 TVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA 321 (434)
T ss_dssp TSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred CCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence 999999999998742 3456789999876643211000 000111123578888888899999999999988864
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=174.53 Aligned_cols=163 Identities=23% Similarity=0.388 Sum_probs=134.3
Q ss_pred CC-CCceEEEEEEeccCC--CeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DN-QADLTWTCEAFGVPD--VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~-G~~~~l~C~~~~~p~--~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
.+ |++++|.|.+.+.|. +.+.|+|++..+.... ....++.|.|.+++ .+|+|.|+|.+.|. +.....
T Consensus 15 ~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~--------~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~-~~~~~~ 84 (190)
T 2wv3_A 15 RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR--------KNASNMEYRINKPR-AEDSGEYHCVYHFV-SAPKAN 84 (190)
T ss_dssp CCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCC--------BCCSEEEEEESSCC-GGGCEEEEEEEEET-TEEEEE
T ss_pred ccCCceEEEEEEeccCCCCceEEEEEECCEECcccc--------eEeccEEEEEecCC-cccCEEEEEEEEeC-Cccccc
Confidence 45 999999999998776 8999999999987421 11145789999999 99999999999998 777778
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEec---CCCcEEEeeCC---CEEEcCCC
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG---SGGRRKIFENG---NLLISPVS 150 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~~---~~~~~~~~~~~---~l~i~~v~ 150 (505)
+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++ +|..+. ...++.+..++ .|.|.++.
T Consensus 85 ~~l~V~~-~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 161 (190)
T 2wv3_A 85 ATIEVKA-APDITGHK--RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161 (190)
T ss_dssp EEEEEEC-CCEEEEEC--SEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCC
T ss_pred EEEEEec-CCcccccC--CcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEecc
Confidence 8888885 67665544 44668999999999999999999999999 787764 34555555443 59999999
Q ss_pred -CCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 151 -RDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 151 -~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
.+|.|.|+|.|.|..|.....+.|.|.
T Consensus 162 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 162 ITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp TTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 799999999999999998888888774
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=179.40 Aligned_cols=170 Identities=28% Similarity=0.454 Sum_probs=131.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-----ECCeEEEEcC-CCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYL-NPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~-~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|++++|.|.+.|.|.+.|.|+|++..+... ..... .+..|.|.++ + .+|+|.|+|.+.|..+.
T Consensus 18 v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~~-~~d~G~Y~C~a~n~~g~ 89 (212)
T 2yd6_A 18 GVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-------RFEVIEFDDGSGSVLRIQPLRT-PRDEAIYECVASNNVGE 89 (212)
T ss_dssp EETTSCEEEEEEEEEESCCEEEEEETTEECCCT-------TEEEEEEGGGTEEEEEECSCCT-TTTCEEEEEEEEETTEE
T ss_pred EecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC-------ceeEEEEcCCCceEEEEeccCC-CCCCeEEEEEEEcCCCc
Confidence 358999999999999999999999999988732 11111 1346999999 7 89999999999998888
Q ss_pred eEeeEEEEEEecC------CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC---CcEEEeeC---C
Q psy14886 75 RYSSAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFEN---G 142 (505)
Q Consensus 75 ~~~~~~l~v~~~~------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~---~~~~~~~~---~ 142 (505)
....+.|.|...+ |.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+... .++..... +
T Consensus 90 ~~~~~~l~V~~~~~~~~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 167 (212)
T 2yd6_A 90 ISVSTRLTVLREDQIPRGFPTIDMGP--QLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167 (212)
T ss_dssp EEEEEEEEEECGGGCCTTCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEE
T ss_pred EEEEEEEEEeccCccCCCcceeecCC--cceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeE
Confidence 7778888887521 3333333 3456889999999999999999999999999988653 33433332 5
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGP 180 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p 180 (505)
.|.|.++..+|+|.|+|.|.|..|...+. +.|.|...+
T Consensus 168 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206 (212)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence 69999999999999999999999988666 677775544
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=200.51 Aligned_cols=260 Identities=15% Similarity=0.199 Sum_probs=164.0
Q ss_pred CCCCceEEEEEEecc-CC-C-eEEEEECCEECcCCCCC-C--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEAFGV-PD-V-TYSWFRNGELLNSETLP-L--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~-~-~~~W~~~~~~l~~~~~~-~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|+.++|.|.+.|. |. + .|.|++++......... . ...+.+.. .+.|.|..+. .+|+|.|+|.|.|..+..
T Consensus 139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~-~s~L~i~~~~-~~d~g~Y~C~a~n~~~~~ 216 (475)
T 1iga_A 139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT-SSQLTLPATQ-CLAGKSVTCHVKHYTNPS 216 (475)
T ss_pred CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEE-EEEEEechhH-cCCCceEEEEEEECCCCc
Confidence 479999999999986 65 4 99999988543211100 0 01223332 2468999998 899999999999887632
Q ss_pred -EeeEEEEEEe-----------------cCCCccCCCCCceEEeeCCCeEEEEeecCCCCC---CeEEEEECCEEecCCC
Q psy14886 76 -YSSAQLRVLT-----------------LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK---PKFVWKKDGNIIGSGG 134 (505)
Q Consensus 76 -~~~~~l~v~~-----------------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~---~~i~W~~~g~~~~~~~ 134 (505)
...+.+.|.. .+|.+...+ +....+.+|+++.|.|.+.|.++ +.|.| + +..+....
T Consensus 217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~-p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~ 293 (475)
T 1iga_A 217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHR-PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAV 293 (475)
T ss_pred eeeeEecccccCcccccccccccCCCCCCCcEEEEcC-CChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCcc
Confidence 1122322210 122221211 11122579999999999988744 59999 4 43332111
Q ss_pred --cEEE------eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE---EeCCeeeeeCCCceEEEeeccEEEEEE
Q psy14886 135 --RRKI------FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHRNLQLRCS 203 (505)
Q Consensus 135 --~~~~------~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~~~l~C~ 203 (505)
.... ...+.|.|.++..+|+|.|+|.|.|..+.......+.+ ..+|.+....+....+..|+.+.|.|.
T Consensus 294 ~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~ 373 (475)
T 1iga_A 294 QGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCL 373 (475)
T ss_pred ccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEE
Confidence 0111 12335999999999999999999999887654444432 344544443333334567889999999
Q ss_pred eeecCCCCeEEEEEeCCEEecCCCCCcc----c---CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 204 AHTEELLDVAYIWTHNGVRIGNMDLNEL----E---TPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 204 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
+.+.+++.+.+.|+++|..+........ . ........+.|.|.....++.|.|+|.|.|....
T Consensus 374 ~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 374 ARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred EeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 9997665678899999988765421000 0 0001112235667777778899999999997654
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=177.26 Aligned_cols=169 Identities=27% Similarity=0.418 Sum_probs=137.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE---CC--eEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ---DN--VLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~---~~--~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.. ...++... ++ +|.|.+++ .+|+|.|+|.+.|..+..
T Consensus 16 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~g~~ 88 (197)
T 2j8h_A 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA------DGLKYRIQEFKGGYHQLIIASVT-DDDATVYQVRATNQGGSV 88 (197)
T ss_dssp EETTSCEEEEEEEECSSCCEEEEEETTEECCC------CSSSEEEEEETTTEEEEEECSCC-GGGCSEEEEEEEETTEEE
T ss_pred EcCCCEEEEEEEEeecCCCEEEEEECCEECcc------CCCcEEEEEcCCCEEEEEECcCC-HHhCEEEEEEEEECCCce
Confidence 36899999999999999999999999998873 23344432 22 89999999 999999999999988887
Q ss_pred EeeEEEEEEecCCCccCCC---CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcC-
Q psy14886 76 YSSAQLRVLTLKPSFKKRP---LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISP- 148 (505)
Q Consensus 76 ~~~~~l~v~~~~p~~~~~~---~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~- 148 (505)
...+.|.|.. +|.+.... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+... ..|.|.+
T Consensus 89 ~~~~~l~V~~-~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 167 (197)
T 2j8h_A 89 SGTASLEVEV-PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167 (197)
T ss_dssp EEEEEEEEEE-EEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTC
T ss_pred eEEEEEEEcC-CCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCC
Confidence 7788888875 33332211 12446788999999999999999999999999999877666655432 4699999
Q ss_pred CCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 149 VSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 168 ~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 168 VERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 99999999999999999998888888875
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=177.92 Aligned_cols=180 Identities=29% Similarity=0.555 Sum_probs=136.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeE-----EEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVL-----TIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L-----~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+....... ...+....++.+ .|.+++ .+|+|.|+|.+.|..+..
T Consensus 21 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~n~~g~~ 98 (212)
T 2v9r_A 21 VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP-RSHRMLLPSGSLFFLRIVHGRKS-RPDEGVYVCVARNYLGEA 98 (212)
T ss_dssp ECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCT-TCSEEECTTSCEEESSCCCCSSC-CCSCEEEEEEEEETTEEE
T ss_pred EeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccccc-ccceEEecCCcEEEEEEEecCCC-cccCeEEEEEEECCCCce
Confidence 4689999999999998999999999999886432110 112233334444 345568 999999999999887765
Q ss_pred -EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCC
Q psy14886 76 -YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDD 153 (505)
Q Consensus 76 -~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d 153 (505)
...+.|.|...++.+...+ ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..........++.|.|.++..+|
T Consensus 99 ~~~~~~l~V~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d 176 (212)
T 2v9r_A 99 VSHDASLEVAILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSD 176 (212)
T ss_dssp ECCCEEEEECEECSSCSBCC--CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGG
T ss_pred eecceEEEEEeccccceeCC--CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhh
Confidence 3467788876566555544 44678999999999998 8889999999999999876554445567889999999999
Q ss_pred CEEEEEEEEcCCCceeee-EEEEEEeCCeeee
Q psy14886 154 SGIYSCTATNVHGMDESK-GRLIVLHGPSYYE 184 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~ 184 (505)
+|.|+|.|.|..|..... +.|.|..+|.+..
T Consensus 177 ~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~ 208 (212)
T 2v9r_A 177 AGKYVCVGTNMVGERESEVAELTVLERPSFVK 208 (212)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred CeeEEEEEecccCceecceEEEEEEeCchHhh
Confidence 999999999999987665 8899987776543
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=178.59 Aligned_cols=172 Identities=31% Similarity=0.594 Sum_probs=136.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeE----EEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVL----TIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L----~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.+.|.+.|.|+|++..+..... ...++...++.+ .|.+++ .+|+|.|+|.+.|..+...
T Consensus 21 v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C~~~n~~g~~~ 96 (217)
T 2vr9_A 21 VKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK---KSHRVQFKDGALFFYRTMQGKK-EQDGGEYWCVAKNRVGQAV 96 (217)
T ss_dssp ECTTSCEEECCEEECSSCCEEEEEETTEECCCSSS---SSSEEECTTSCEEESSCCBSSS-CBCCEEEEEEEEETTEEEE
T ss_pred EeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCc---cceeEEecCCceEEEEEeccCC-cccCceEEEEEecCCCccc
Confidence 46899999999999989999999999998874311 123444444444 578899 9999999999999877654
Q ss_pred e-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEec--------CCCcEEEeeCCCEEE
Q psy14886 77 S-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--------SGGRRKIFENGNLLI 146 (505)
Q Consensus 77 ~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~--------~~~~~~~~~~~~l~i 146 (505)
. .+.+.|...+|.+...+ ....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+. ...+.....++.|.|
T Consensus 97 ~~~~~l~v~~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i 174 (217)
T 2vr9_A 97 SRHASLQIAVLRDDFRVEP--KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174 (217)
T ss_dssp CCCEEEEECEECCSCSBCC--CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEE
T ss_pred cccceEEEEEeCCCcEECC--CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEE
Confidence 3 57777776667666554 44678999999999998 888999999999999887 334555556678999
Q ss_pred cCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
.++..+|.|.|+|.|.|..|.......+.+..
T Consensus 175 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 175 SNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp SSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred eeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 99999999999999999999888876555543
|
| >3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=203.66 Aligned_cols=225 Identities=20% Similarity=0.241 Sum_probs=154.2
Q ss_pred CCCCEEEEEEEEecCCcEEEE-EEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCC-CCceEEEEEEeCC--CCCeE
Q psy14886 250 FADAGEYECVVKSTVGKISTK-TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNW--NSTWF 325 (505)
Q Consensus 250 ~~~~g~y~C~~~n~~g~~~~~-~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~-~i~~y~v~~~~~~--~~~w~ 325 (505)
..+.|.|.|.+.|..+..... .......+|.+|.++. ..+..+++.|+|.+|.+.++ ++..|.|+++... ...|.
T Consensus 304 s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~ 382 (536)
T 3fl7_A 304 PSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECG 382 (536)
T ss_dssp CCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEE
T ss_pred CCCCCccEEEEeccccccCCCccccccccCCCcccceE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCccc
Confidence 456789999999988864332 2222356889998885 47889999999999886554 7999999998743 23444
Q ss_pred EeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCC--CCCccCCCCCCCCCCceeeeeccccccE
Q psy14886 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNTPADKPYQAPSRIGGGGGKIGDL 403 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~--~~~~~t~~~~p~~~P~~~~~~~~~~~~v 403 (505)
.....................+.+ |.|++.|.|+|.|.|..|.+.++.. ...+.|.+. +|..+.+...+.++|
T Consensus 383 ~c~~~~~~~~~~~~~~~ts~tI~g-L~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~----~Ps~~~~~~~s~tSV 457 (536)
T 3fl7_A 383 PCEASVRYSEPPHGLTRTSVTVSD-LEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT----EPPKVRLEGRSTTSL 457 (536)
T ss_dssp ECCTTCEESSCSSSBCSSEEEEEC-CCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSC----CCCEEEEEECCC-CC
T ss_pred ccCCCceEEEeecCCccceeEeCC-CCCCCEEEEEEEEEecCCCCCCCCccceeEEeeccc----CCCCCceeeccCCeE
Confidence 332221100000001233445555 9999999999999999998543211 113444333 455555567788999
Q ss_pred EEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEe
Q psy14886 404 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483 (505)
Q Consensus 404 ~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~ 483 (505)
.|+|++ +.+.++.|++|+|+|+..+.. ....... ...+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.
T Consensus 458 ~LsW~p--P~~~ng~I~~Y~V~y~~~~~~-~~~~~v~----~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~ 530 (536)
T 3fl7_A 458 SVSWSI--PPPQQSRVWKYEVTYRKKGDS-NSYNVRR----TEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQ 530 (536)
T ss_dssp EEEEEC--CTTTTTTCSEEEEEEEEC--C-CCCEEEE----ESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEE
T ss_pred EEEEEC--CcCCCCcccEEEEEEEECCCC-ceEEEEc----CCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEE
Confidence 999998 467889999999999988744 2212222 234678999999999999999999999999999999999
Q ss_pred ecce
Q psy14886 484 HDPL 487 (505)
Q Consensus 484 t~p~ 487 (505)
|.+.
T Consensus 531 T~~~ 534 (536)
T 3fl7_A 531 TLSP 534 (536)
T ss_dssp CCC-
T ss_pred eCCC
Confidence 9764
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=176.19 Aligned_cols=170 Identities=23% Similarity=0.445 Sum_probs=132.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceE--e
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY--S 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~--~ 77 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+... ...++.. .+++|.|.+++ .+|+|.|+|.+.+..+... .
T Consensus 14 v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~ 87 (189)
T 2v5t_A 14 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI-----SDNRFAMLANNNLQILNIN-KSDEGIYRCEGRVEARGEIDFR 87 (189)
T ss_dssp EETTSCEEECCEEECSSCCEEEEEC-----CBC-----CCTTEEECTTSCEEETTCC-GGGCEEEEEEEEETTTTEEEEE
T ss_pred EeCCCcEEEEEEEcCCCCCEEEEEECCccceec-----cCCeEEEecCCCEEEeeCC-HhHCcEEEEEEEEcCCCceEEE
Confidence 468999999999999899999999999877632 3455554 46789999999 9999999999998765433 3
Q ss_pred eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee-CCCEEEcCCCCCCCEE
Q psy14886 78 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGI 156 (505)
Q Consensus 78 ~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~-~~~l~i~~v~~~d~G~ 156 (505)
.+.+.|.. +|.+..........+.+|+.+.|.|.+.+.|.+.+.|+++|..+....+..... ++.|.|.++..+|+|.
T Consensus 88 ~~~l~v~~-~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 166 (189)
T 2v5t_A 88 DIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 166 (189)
T ss_dssp EEEEEEEE-EEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEEecC-CCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCee
Confidence 45566664 555554443335678899999999999999999999999999988766655543 4569999999999999
Q ss_pred EEEEEEcCCCceeeeEEEEEE
Q psy14886 157 YSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 157 y~C~~~~~~g~~~~~~~l~v~ 177 (505)
|+|.|.|..|.....+.|.|.
T Consensus 167 Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 167 YVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEeCCCceeEEEEEEEE
Confidence 999999999998888888774
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-24 Score=179.26 Aligned_cols=165 Identities=17% Similarity=0.261 Sum_probs=124.5
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEEC--C--eEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQD--N--VLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~--~--~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|+.+.|.|.+.+ .|.+.|+|+|||.+|..+ ...++.... + +|.|.+++ .+|+|.|+|.|.| |..
T Consensus 14 v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~-----~~~~~~~~~~~g~~~L~I~~v~-~~D~G~Y~C~a~N--g~a 85 (207)
T 3rbs_A 14 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG-----PKYKMHIDRNTGIIEMFMEKLQ-DEDEGTYTFQLQD--GKA 85 (207)
T ss_dssp ECGGGCEEEEEECSCCCSCCEEEEEETTEEECSS-----SSCEEEECTTTCEEEEEESCCC-GGGCEEEEEEEEE--TTE
T ss_pred EEeCCeEEEEEEEecCCCCCEEEEEECCEECccC-----CCEEEEEeCCCCEEEEEECCCC-hhhCEEEEEEEEC--CCe
Confidence 468999999999964 789999999999999732 112222222 2 69999999 9999999999998 444
Q ss_pred EeeEEEEEEe--------------------cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCCeEEEEECCEEecCCC
Q psy14886 76 YSSAQLRVLT--------------------LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGG 134 (505)
Q Consensus 76 ~~~~~l~v~~--------------------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~~~~~~~ 134 (505)
.....+.+.. .+|.|.... ...+.+|+.+.|.|.+.|. |.+.+.|+|+|..+..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~---~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~ 162 (207)
T 3rbs_A 86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 162 (207)
T ss_dssp EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE---EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCC
T ss_pred EEEEEEEEEccchhhhcccccccccccccCCCCceEecC---CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCC
Confidence 4444332210 134443222 3568899999999999998 899999999999997655
Q ss_pred cEEEee-CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 135 RRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 135 ~~~~~~-~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++.... ..+|.|.++..+|+|.|+|.|.|..|.....+.|.+
T Consensus 163 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 163 KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp CCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred ceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 432221 235999999999999999999999999888887754
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=181.25 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=145.2
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.++.+|.++.+.....+++.|+|+++ ++.+.+|.|+|+..+...+...... .....+.+.+ |.+++.
T Consensus 4 ~p~~~P~~l~~~~~~~~si~l~W~~p---~g~i~~Y~v~~~~~~~~~~~~~~~~---------~~~~~~~i~~-L~p~t~ 70 (234)
T 3f7q_A 4 MDLGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDSESEAHLLD---------SKVPSVELTN-LYPYCD 70 (234)
T ss_dssp -CCCCCEEEEEEECSSSCEEEEEECC---SSCCCEEEEEEEETTSCGGGCEEEE---------ESSSEEEECS-CCTTCE
T ss_pred CCCCCCcceEEEEcCCCEEEEEEECC---CCccceEEEEEEECCCCccceEEEc---------CCccEEEECC-CCCCCE
Confidence 47889999999999999999999987 3578999999987654322111000 1233455555 999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC---
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--- 433 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~--- 433 (505)
|.|+|+|.|..|.|.++... .+.|.+..|. +|.++.+...+.++|.|.|++ +...+|.|.+|+|+|+..+...
T Consensus 71 Y~~~V~A~n~~G~g~~s~~~-~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~ 146 (234)
T 3f7q_A 71 YEMKVCAYGAQGEGPYSSLV-SCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAE--PAETNGEITAYEVCYGLVNDDNRPI 146 (234)
T ss_dssp EEEEEEEEETTEECCCCCCE-EEECCCCCCC-CCCCCEEEECSSSCEEEECCC--CSCCSSCCCEEEEEEEEBCTTSCBS
T ss_pred EEEEEEEEeCCCcCCCCCeE-EEEcCCCCCC-CCCccEEEEecCCEEEEEEcC--CCCCCCceeEEEEEEEECCCCCCcc
Confidence 99999999999999887664 6667666664 688899988889999999998 4567889999999999876433
Q ss_pred --cEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCce-EEEeecc
Q psy14886 434 --FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV-VTIWHDP 486 (505)
Q Consensus 434 --~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~-~~~~t~p 486 (505)
|..... .....+.+.|.+|.|++.|.|+|+|+|.+|.|++|+. +.+.|.+
T Consensus 147 ~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~ 199 (234)
T 3f7q_A 147 GPMKKVLV---DNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQP 199 (234)
T ss_dssp SCCEECCC---SCTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSC
T ss_pred CcceEEEe---cCCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCC
Confidence 221111 1223467899999999999999999999999999985 5565543
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-21 Score=177.29 Aligned_cols=296 Identities=14% Similarity=0.124 Sum_probs=197.2
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEE--eeccEEEEEEeeec-CCCCeEEEEEeC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIA--AHRNLQLRCSAHTE-ELLDVAYIWTHN 219 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~~~~~~w~~~ 219 (505)
.+.+.++.......|+..+.+..|..... ...+...++ .+..+.+. ....+.|.|..... ....+.+.|...
T Consensus 59 ~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~~~~----~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~~ 133 (368)
T 1fnf_A 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIPAVP----PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPV 133 (368)
T ss_dssp EEECCCCCTTSCEEEEEEEEETTEECCCE-EEEECCCCC----CCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEET
T ss_pred EEEECCCCCCCEEEEEEEEEcCCCccCce-eeeecCCCc----CCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEEC
Confidence 46777888777777888888877644322 222222111 12233332 24567788876522 222345555542
Q ss_pred CEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEe
Q psy14886 220 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299 (505)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w 299 (505)
+... .. ...........+.+..+.....+.|+..|.|..|... ........+|.+|.++.+.....+++.|+|
T Consensus 134 ~~~~---~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~~~~~~P~~l~~~~~~~~sv~l~W 206 (368)
T 1fnf_A 134 KNEE---DV---AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST-PLRGRQKTGLDSPTGIDFSDITANSFTVHW 206 (368)
T ss_dssp TCTT---CC---EEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEECCCCCCEEEEEESCCSSEEEEEE
T ss_pred CCCC---cc---EEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCC-CeEeeecCCCCCCCccEEEEccCCEEEEEE
Confidence 2110 00 0011112345788888888888888889988877543 233444566778888888888999999999
Q ss_pred ecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCC
Q psy14886 300 TDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378 (505)
Q Consensus 300 ~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~ 378 (505)
.++. +.+.+|.|+++.... ..+...... .....+.+.+ |.+++.|.|+|.|.|..|.+.++..
T Consensus 207 ~~p~---~~i~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~~i~~-L~p~t~Y~~~V~A~n~~g~~~~~~~--- 270 (368)
T 1fnf_A 207 IAPR---ATITGYRIRHHPEHFSGRPREDRVP---------HSRNSITLTN-LTPGTEYVVSIVALNGREESPLLIG--- 270 (368)
T ss_dssp ECCS---SCCSEEEEEEECSCCSSCCEEEEEE---------TTCCEEEEES-CCTTCEEEEEEEEEETTEECCCEEE---
T ss_pred eCCC---CCcCEEEEEEecCCCCCCccEEEeC---------CCcCEEEECC-CCCCCEEEEEEEEEeCCccCCcccc---
Confidence 9863 568899999987754 333332111 1223445554 9999999999999999998875432
Q ss_pred ccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCceeeEEEEcCCccc
Q psy14886 379 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 379 ~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
....++.+|.++.+.....++|.|.|+++.. .+.+|.|+|+..+... +....+.. ..+.+.+.+|.|
T Consensus 271 ---~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~~-----~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~p 338 (368)
T 1fnf_A 271 ---QQSTVSDVPRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPG----SKSTATISGLKP 338 (368)
T ss_dssp ---EEECCCCSCEEEEEEEEETTEEEEEEECCSS-----CCSEEEEEEEETTCCSCCEEEEEET----TCCEEEECSCCT
T ss_pred ---cccCCCCCCCeeEEEecCCCEEEEEeeCCCC-----ccceEEEEEEECCCCCccEEEEcCC----CeeEEEecCCCC
Confidence 2344556788999988889999999998422 4899999999877432 23222222 346789999999
Q ss_pred eeeEEEEEEEecCCCCCCCCc
Q psy14886 458 YTEYEVKVQAINDVGPGPESE 478 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~ 478 (505)
++.|.|+|+|+|..|.|++|.
T Consensus 339 ~t~Y~~~V~A~~~~G~g~~s~ 359 (368)
T 1fnf_A 339 GVDYTITVYAVTGRGDSPASS 359 (368)
T ss_dssp TCCEEEEEEEECCCSSSCCBC
T ss_pred CCEEEEEEEEeCCCCcCcccC
Confidence 999999999999999999886
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-21 Score=178.27 Aligned_cols=299 Identities=12% Similarity=0.092 Sum_probs=200.1
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEE--eeccEEEEEEeeec-CCCCeEEEEEe
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIA--AHRNLQLRCSAHTE-ELLDVAYIWTH 218 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~~~~~~w~~ 218 (505)
..+.+.++.......|+..+.+..|..... .+.....++ .+..+.+. ....+.|.|..... +...+.+.|..
T Consensus 59 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~~~p----~p~~l~~~~~~~~si~l~W~~~~~~~i~~Y~v~~~~ 133 (375)
T 3t1w_A 59 SSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIPEVP----QLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVA 133 (375)
T ss_dssp CEEEECCCCTTCCEEEEEEEEETTEECCCE-EEEECCCCC----CCSCCEEECCCSSEEEEECCCCCCTTEEEEEEEEEE
T ss_pred cEEEEcCCcCCCEEEEEEEEEcCCCCCCcE-EeeEcCCCC----CCceEEEEecCCCeEEEEEECCCCCCceEEEEEEEE
Confidence 357888888877777777787766543332 222222111 12333333 34467777765421 12234445554
Q ss_pred CCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEE
Q psy14886 219 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 298 (505)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~ 298 (505)
.+..... ...........+.+..+.....+.|+..|.|..|........ ....|.+|.++.+.....+++.|+
T Consensus 134 ~~~~~~~------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~-~~t~~~~p~~l~~~~~~~~si~l~ 206 (375)
T 3t1w_A 134 AGEGIPI------FEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLT-QQTAVPPPTDLRFTNIGPDTMRVT 206 (375)
T ss_dssp SSSCCSC------EEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEE-EECCCCCCEEEEEESCCSSCEEEE
T ss_pred CCCCCce------eEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeee-eecCCCCCceeEEEecccCEEEEE
Confidence 3321100 001122234578899999888889999999988864433322 222455788888888899999999
Q ss_pred eecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCC
Q psy14886 299 WTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377 (505)
Q Consensus 299 w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 377 (505)
|.++. +..+.+|.|+++.... ..|....... ....+.+.+ |.+++.|.|+|.|.|..|.+.++..
T Consensus 207 W~~p~--~~~i~~Y~v~~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y~~~V~A~~~~g~s~~~~~-- 272 (375)
T 3t1w_A 207 WAPPP--SIDLTNFLVRYSPVKNEEDVAELSISP---------SDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPLRG-- 272 (375)
T ss_dssp EECCS--SCCCCEEEEEEEEGGGTTCCEEEEECT---------TCCEEEECS-CCTTCEEEEEEEEEETTEECCCEEE--
T ss_pred EcCCC--CCCccEEEEEEEeCCCCCCcEEEEcCC---------CcCEEEeCC-CCCCCEEEEEEEEEcCCCcCCceee--
Confidence 99874 4668999999987753 4444432211 123444444 9999999999999999998875533
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC-CCcEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
...+ ++.+|.++.+.....+++.|.|+++ .+.+.+|.|+|+..+. ..+....... ..+.+.|.+|.
T Consensus 273 ~~~t----~p~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~ 339 (375)
T 3t1w_A 273 RQKT----GLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPH----SRNSITLTNLT 339 (375)
T ss_dssp EEEC----CCCCCEEEEEESCCSSCEEEEEECC-----SSCCSEEEEEEEETTCCSSCEEEEEET----TCCEEEECSCC
T ss_pred EEec----CCCCCCccEeeeccCCEEEEEECCC-----CcceeeEEEEEEECCCCCcceeEEcCC----CccEEEECCCC
Confidence 2233 4457889999888899999999983 2779999999999875 5555444333 34678999999
Q ss_pred ceeeEEEEEEEecCCCCCCCCce
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEV 479 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~ 479 (505)
|++.|.|+|+|+|..|.|++..-
T Consensus 340 p~t~Y~~~V~A~~~~G~s~p~s~ 362 (375)
T 3t1w_A 340 PGTEYVVSIVALNGREESPLLIG 362 (375)
T ss_dssp TTCEEEEEEEEEETTEECCCEEE
T ss_pred CCCEEEEEEEEECCCCCCCceee
Confidence 99999999999999999987643
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=173.41 Aligned_cols=163 Identities=19% Similarity=0.339 Sum_probs=130.9
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-----------CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-----------DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-----------~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.+|++++|.|.+. +.|.+.+.|+|++..+... ...++.+. .++|.|.+++ .+|+|.|+|.+
T Consensus 14 v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~ 87 (195)
T 2c5d_C 14 GARGLTGTLRCQLQVQGEPPEVHWLRDGQILELA-----DSTQTQVPLGEDEQDDWIVVSQLRITSLQ-LSDTGQYQCLV 87 (195)
T ss_dssp ECTTCCEEEEEEEEEESSCCCCEEEETTEECCSC-----EEEEEEEECSSSTTSEEEEEEEEEESSCC-STTCEEEEEEE
T ss_pred EecCCcEEEecccccCCCCcEEEEEECCEEcccC-----CCCceEEEEccccccceeeccEEEEEecc-ccCCcEEEEEE
Confidence 46899999999999 8899999999999998742 11223321 3589999999 99999999999
Q ss_pred EcccCceEee-EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEE
Q psy14886 69 KNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLI 146 (505)
Q Consensus 69 ~~~~~~~~~~-~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i 146 (505)
.+..+..... +.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... ..++.|.|
T Consensus 88 ~~~~~~~~~~~~~l~V~~-~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--~~~~~L~i 162 (195)
T 2c5d_C 88 FLGHQTFVSQPGYVGLEG-LPYFLEEP--EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--GPQRSLHV 162 (195)
T ss_dssp EETTEEEECCCEEEEECC-SCEEEECC--CCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--SCCEEEEE
T ss_pred EeCCCceecccEEEEEec-CCeEEcCC--CcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--CCCCeEEE
Confidence 9977665544 7888875 67665554 34678899999999999999999 99999999888654432 34556999
Q ss_pred cCCCCCCCEEEEEEEEcCCCcee-eeEEEEE
Q psy14886 147 SPVSRDDSGIYSCTATNVHGMDE-SKGRLIV 176 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~~~-~~~~l~v 176 (505)
.++. |+|.|+|.|.|..|... ..+.|.|
T Consensus 163 ~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 163 PGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp CCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 9887 78999999999999886 5788877
|
| >1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-23 Score=175.30 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=143.9
Q ss_pred EcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeec-cC
Q psy14886 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL-VP 353 (505)
Q Consensus 275 v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~ 353 (505)
+..+|.+|.++.+......++.|+|+++.+.+. ..+|.|+|+......+.-.. .........+.+| .+
T Consensus 4 ~g~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~-~~~Y~v~~~~~~~~~~~~~~----------~~~~~~~~~i~~L~~~ 72 (215)
T 1bqu_A 4 SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWATHKFADCKA----------KRDTPTSCTVDYSTVY 72 (215)
T ss_dssp -CCCCCCCEEEEEEEETTSCCEEEEECCSCCSS-CCEEEEEEEETTEECCCEEC----------CSSCTTEEECSSCCCT
T ss_pred cCCCCCCCEeeEeEECCCCcEEEEcCCCCCCCC-CceEEEEEEEcCCCcccccc----------ccCCcceEEEcCCccc
Confidence 456899999999988888999999999887654 47999999876432221110 1122233444449 99
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc--ccccEEEEEEeCCccccCCCCceEEEEEEEcCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKND 431 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~--~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~ 431 (505)
++.|.|+|.|.|..|.+. +... .+.+....++.+|.++.+... +.+++.|+|++ +...++.+++|.|+|+..+.
T Consensus 73 ~t~Y~~~V~A~n~~G~~~-s~~~-~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~y~~~~~ 148 (215)
T 1bqu_A 73 FVNIEVWVEAENALGKVT-SDHI-NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDA 148 (215)
T ss_dssp TSCEEEEEEEEETTEEEE-CCCE-EECGGGSEECCCCEEEEEECC--CCSCEEEEEEC--CGGGGTSCEEEEEEEEETTC
T ss_pred cccEEEEEEEEecccCcc-CCcE-EecccccCcCCCCCceEEEEecCCCceEEEEEeC--CCCCCcceEEEEEEEccCCC
Confidence 999999999999999986 3222 344445556779999988754 67899999998 44567899999999999887
Q ss_pred CCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCC---CCceEEEeecc
Q psy14886 432 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP---ESEVVTIWHDP 486 (505)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~---~s~~~~~~t~p 486 (505)
..|....... .....+.+.|.+|.|++.|.|+|+|.|.+|.|+ +|+.+.+.|.+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~ 205 (215)
T 1bqu_A 149 STWSQIPPED-TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 205 (215)
T ss_dssp SSCEECCGGG-GCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECC
T ss_pred CCceEecccc-ccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccc
Confidence 7787543211 112346789999999999999999999999976 55666666653
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-21 Score=186.28 Aligned_cols=264 Identities=14% Similarity=0.169 Sum_probs=162.5
Q ss_pred CCCCCceEEEEEEeccCC----CeEEEEEC--CEECc----CCC-----CCCCCCCcEEEE------CCeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPD----VTYSWFRN--GELLN----SET-----LPLEDQDRYFIQ------DNVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~----~~~~W~~~--~~~l~----~~~-----~~~~~~~~~~~~------~~~L~i~~~~~~~ 59 (505)
+.+|++++|.|.+.+.+. ..+.|+|+ +..+. ... ......+|+.+. ..+|.|.+++ .+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~ 90 (512)
T 1zvo_C 12 VKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMS-AA 90 (512)
T ss_pred EcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCC-HH
Confidence 468999999999986542 68999995 22110 000 001124577653 2589999999 99
Q ss_pred CCeEEEEEEEcccC-----------c--eEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eE
Q psy14886 60 DPAMYQCRAKNQLK-----------T--RYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KF 121 (505)
Q Consensus 60 d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i 121 (505)
|+|.|.|.+.+..+ . ....+.|.|... +|.+.... +.......|+.++|.|.+.+. |.+ .|
T Consensus 91 Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~~~~~~~~~~~v~L~C~~~g~~P~p~~v 169 (512)
T 1zvo_C 91 DTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPII-SGCRHPKDNSPVVLACLITGYHPTSVTV 169 (512)
T ss_pred HCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEecc-CCcccccCCCeEEEEEEEEeeecCceEE
Confidence 99999999987542 1 112456777632 23332111 111101246899999999887 665 99
Q ss_pred EEEECCEEecC-CCcEEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeE-----------EEEEEeC----
Q psy14886 122 VWKKDGNIIGS-GGRRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKG-----------RLIVLHG---- 179 (505)
Q Consensus 122 ~W~~~g~~~~~-~~~~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~-----------~l~v~~~---- 179 (505)
.|++++..... ........+ ..|.|.....+ .|.|+|.|.|..+...... .+.+..+
T Consensus 170 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~ 248 (512)
T 1zvo_C 170 TWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAE 248 (512)
T ss_pred EEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchh
Confidence 99996543210 000011112 23778777777 8999999999887655443 2333222
Q ss_pred ------------------------------------------------CeeeeeCCCceEEEeeccEEEEEEeeecCCCC
Q psy14886 180 ------------------------------------------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211 (505)
Q Consensus 180 ------------------------------------------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 211 (505)
|.+....+....+..|+.+.|.|.+.+..++.
T Consensus 249 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~ 328 (512)
T 1zvo_C 249 GSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKD 328 (512)
T ss_pred ccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceECCC
Confidence 22222222233355799999999999875556
Q ss_pred eEEEEEeCCEEecCCCC-C---cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 212 VAYIWTHNGVRIGNMDL-N---ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 212 ~~~~w~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
+.+.|.++|..+..... . ...... ....+.|.|.....+|.|.|+|.|.|..+...
T Consensus 329 ~~i~W~k~g~~~~~~~~~~~~~~~~~gt-~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~ 388 (512)
T 1zvo_C 329 AHLTWEVAGKVPTGGVEEGLLERHSNGS-QSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ 388 (512)
T ss_pred eEEEEEECCEeccCceeccceecCCCCe-EEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence 78999999987652110 0 000111 11224688888888899999999999887543
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=173.69 Aligned_cols=166 Identities=19% Similarity=0.224 Sum_probs=127.9
Q ss_pred CCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE--EC--CeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI--QD--NVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+|+.+.|.|.+.+ .|.+.++|+|++.++.. ..++.+ .+ .+|.|.+++ .+|+|.|+|.+.|..+....
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~-------~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~~~n~~~~~~~ 87 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY-------SDRVKTGVTGEQIWLQINEPT-PNDKGKYVMELFDGKTGHQK 87 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCC-------CSSEEEEEETTEEEEEEESCC-GGGCEEEEEEEECSSCEEEE
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccC-------CCeEEEEEeCCEEEEEECCCC-cccCEEEEEEEecCCcceEE
Confidence 3455566666655 45899999999999873 344443 33 359999999 99999999999997777665
Q ss_pred eEEEEEEe-------------------cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE
Q psy14886 78 SAQLRVLT-------------------LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 138 (505)
Q Consensus 78 ~~~l~v~~-------------------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~ 138 (505)
.+.|.|.. ..|.+.... +....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++.+
T Consensus 88 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~ 166 (212)
T 2r15_A 88 TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL-PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL 166 (212)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBC-CSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEE
T ss_pred EEEEEEeeccchhhhccccCcccccccCCCcccccC-CCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEE
Confidence 56555431 022222211 3456789999999999999999999999999999987766665
Q ss_pred eeC-C---CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 139 FEN-G---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 139 ~~~-~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
... + .|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 167 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 167 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp EEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 543 3 79999999999999999999999998888888875
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-24 Score=206.47 Aligned_cols=258 Identities=17% Similarity=0.255 Sum_probs=159.4
Q ss_pred CCCCCceEEEEEEecc-CC-CeEEEEECCEECcCCCCC--CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGV-PD-VTYSWFRNGELLNSETLP--LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~-~~~~W~~~~~~l~~~~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.++|.|.+.+. |. +.|.|+|++..+...... ....+++.. .+.|.|.+++ .+| |.|+|.|.|..+...
T Consensus 144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~s~L~i~~~~-~~d-G~Y~C~a~n~~~~~~ 220 (457)
T 1hzh_H 144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-SSVVTVPSSS-LGT-QTYICNVNHKPSNTK 220 (457)
T ss_dssp CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEE-EEEEEECSGG-GGT-SCCEEEEEEGGGTEE
T ss_pred ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEE-EEEEEecccc-cCC-ceEEEEEEeCCCCcc
Confidence 3589999999999885 64 899999998654311000 011223322 2479999999 889 999999999776654
Q ss_pred eeEEEEEEec----------------CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC----eEEEEECCEEecCCCcE
Q psy14886 77 SSAQLRVLTL----------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP----KFVWKKDGNIIGSGGRR 136 (505)
Q Consensus 77 ~~~~l~v~~~----------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~----~i~W~~~g~~~~~~~~~ 136 (505)
....+.+... +|.+...+......+.+|+++.|.|.+.|.+++ .|.|++++..+......
T Consensus 221 ~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~ 300 (457)
T 1hzh_H 221 VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK 300 (457)
T ss_dssp EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEE
T ss_pred eeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccc
Confidence 4443333210 122111111111115679999999999987543 99999999887543211
Q ss_pred --EEeeCCCEEEcC---CCCCC---CEEEEEEEEcCCCceeeeEEEE----EEeCCeeeeeCCCceEEEeeccEEEEEEe
Q psy14886 137 --KIFENGNLLISP---VSRDD---SGIYSCTATNVHGMDESKGRLI----VLHGPSYYEQLPPKITIAAHRNLQLRCSA 204 (505)
Q Consensus 137 --~~~~~~~l~i~~---v~~~d---~G~y~C~~~~~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~g~~~~l~C~~ 204 (505)
....++.+.+.. +...| +|.|+|.|.|..+.......+. +..+|.+....+....+..|+ +.|.|.+
T Consensus 301 ~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~ 379 (457)
T 1hzh_H 301 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLV 379 (457)
T ss_dssp EEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEE
T ss_pred cceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEE
Confidence 122345555543 23445 9999999998755443333332 233455444433333334555 9999999
Q ss_pred eecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecC------CeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 205 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.+.+++.+.+.|+++|..+..... .......+ +.|.+.....++.|.|+|.|.|....
T Consensus 380 ~g~~p~~~~v~W~k~g~~l~~~~~----~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 380 KGFYPSDIAVEWESNGQPENNYKT----TPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp EEEBSSCCEEEEEETTEECCCEEE----CCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EeEECCCCEEEEEECCEECcceee----cCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 998766678899999988753210 00011111 23445555556789999999997654
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=170.73 Aligned_cols=166 Identities=24% Similarity=0.429 Sum_probs=131.3
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEE-CCEECcCCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFR-NGELLNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~-~~~~l~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.+|++++|.|.+.+.+ .+.+.|+| ++..+.. ...++... .++|.|.+++ .+|+|.|+|.+.+..+
T Consensus 14 v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~------~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~ 86 (191)
T 1epf_A 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNAN-IDDAGIYKCVVTAEDG 86 (191)
T ss_dssp EETTCCEEEEEEECCCSCCCEEEEECTTSCEECC------BSSSEEEEEEETTEEEEEECSCC-GGGCEEEEEEEEETTT
T ss_pred EcCCCCEEEEEECCCCCCCceEEEEeCCCccccC------CCCeEEEEECCCCceEEEEccCC-cccCEEEEEEEEcCCC
Confidence 36899999999998876 79999999 8887763 23444442 3689999999 9999999999998874
Q ss_pred -ceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC--CCcEEEeeCCCEEEcCCC
Q psy14886 74 -TRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVS 150 (505)
Q Consensus 74 -~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~~~~~l~i~~v~ 150 (505)
.....+.|.|.. +|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..++....++.|.|.++.
T Consensus 87 ~~~~~~~~l~v~~-~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 163 (191)
T 1epf_A 87 TQSEATVNVKIFQ-KLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK 163 (191)
T ss_dssp EEEEEEEEEEEEC-CSEEEECC--SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCC
T ss_pred cceEEEEEEEeec-CceEecCC--CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCC
Confidence 444567777774 56655544 345688999999999999999999999999998753 446666667789999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+|+|.|+|.|.|..+.......+.|
T Consensus 164 ~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 164 KTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp GGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred hhhCEEEEEEEEEecceeEEEEEEEE
Confidence 99999999999998865544444443
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=178.17 Aligned_cols=261 Identities=21% Similarity=0.342 Sum_probs=165.6
Q ss_pred cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe--eC---CCEEEcCCCC-CCCEEEEE
Q psy14886 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--EN---GNLLISPVSR-DDSGIYSC 159 (505)
Q Consensus 86 ~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~--~~---~~l~i~~v~~-~d~G~y~C 159 (505)
.+|.|...+ ....+.+|+++.|.|.+.|.|.+.+.|+++|..+... +.... .+ ..|.|.++.. .|+|.|+|
T Consensus 5 ~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 5 EPPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred cCCeeeecC--CceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence 356666554 4567899999999999999999999999999887543 33322 22 3599999998 99999999
Q ss_pred EEEcCCCceeeeEEEEEEeCC------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 160 TATNVHGMDESKGRLIVLHGP------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 160 ~~~~~~g~~~~~~~l~v~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
.|.|..|.....+.|.|...+ +.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ..
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~--~v~W~k~~~~~~~~~~---~~ 156 (304)
T 2yd9_A 82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDPSAS---NG 156 (304)
T ss_dssp EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCC--EEEEEETTEECCGGGG---TT
T ss_pred EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCC--eEEEEECCEECcCCCC---cc
Confidence 999999988888889987652 223334556678889999999999887765 6779999988764321 01
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE-EEEEEcCCCCCCCce----EEEEEeCCeEEEEeecCCCCCCC
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK-TTVIVEGPPGLPGGV----QVVEVHKTSATIQWTDGATNGRP 308 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~-~~l~v~~~p~~p~~~----~~~~~~~~~v~l~w~~~~~~~~~ 308 (505)
.........|.|..+..+|.|.|+|.|.|..|..... ..+.+.....+|... ......+..+.|.|..
T Consensus 157 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~------- 229 (304)
T 2yd9_A 157 RIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA------- 229 (304)
T ss_dssp SEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEE-------
T ss_pred eEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEE-------
Confidence 1223345689999999999999999999999876533 455554322222100 0112234556666653
Q ss_pred CceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 309 ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 309 i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
...+.....|......+.... ....+...+.+. ...+.+.|+|.|.|..|...
T Consensus 230 ------~g~p~p~v~W~~~~~~l~~~~-~~~~~~~~L~i~---~~~d~G~Y~C~a~N~~G~~~ 282 (304)
T 2yd9_A 230 ------VGSPMPYVKWMQGAEDLTPED-DMPVGRNVLELT---DVKDSANYTCVAMSSLGVIE 282 (304)
T ss_dssp ------EEESCCEEEEEETTEECSCSS-SCCBSEEEEEEC---SCCSCEEEEEEEEETTEEEE
T ss_pred ------eeeCCCEEEEEECCEECCCcc-cccCCcEEEEEc---ccccCEEEEEEEEeCCCcEE
Confidence 222222233443322222110 000111122222 33567899999999999764
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=168.19 Aligned_cols=186 Identities=25% Similarity=0.490 Sum_probs=144.1
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEec-CCCcEEEee--C--CCEEEcCCCC-CCCEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFE--N--GNLLISPVSR-DDSGIYSCT 160 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~-~~~~~~~~~--~--~~l~i~~v~~-~d~G~y~C~ 160 (505)
+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|+++|..+. ...++.... + ..|.|.++.. .|+|.|+|.
T Consensus 6 pP~~~~~p--~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 83 (212)
T 2yd1_A 6 PPEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV 83 (212)
T ss_dssp CCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred CCEEEcCC--CceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence 56666654 44678999999999999999999999999999886 444554432 2 3699999999 999999999
Q ss_pred EEcCCCc-eeeeEEEEEEeCC------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 161 ATNVHGM-DESKGRLIVLHGP------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 161 ~~~~~g~-~~~~~~l~v~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
+.|..|. ....+.|.|...+ +.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....
T Consensus 84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~------ 155 (212)
T 2yd1_A 84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP--NIYWIKNQTKVDMSN------ 155 (212)
T ss_dssp EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCC--EEEEEETTEECCTTS------
T ss_pred EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCC--eEEEEECCeEcccCC------
Confidence 9999988 6677888887652 223334556677889999999999988765 577999998886532
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE-EEEEEcCCCCCC
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK-TTVIVEGPPGLP 282 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~-~~l~v~~~p~~p 282 (505)
......++.|.|..+..+|.|.|+|.|.|..|..... +.|.|...+..+
T Consensus 156 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~ 205 (212)
T 2yd1_A 156 PRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGT 205 (212)
T ss_dssp TTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C-
T ss_pred CeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccccc
Confidence 2234456799999999999999999999999988764 788887765443
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-25 Score=212.17 Aligned_cols=261 Identities=14% Similarity=0.160 Sum_probs=163.2
Q ss_pred CCCCceEEEEEEecc-CCC-eEEEEECCEECcCCCC-CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGV-PDV-TYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~~-~~~W~~~~~~l~~~~~-~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
.+|+.++|.|.+.|. |.+ .|.|+|++..+..... .....+.+.. .+.|.|.+++ .+| |.|+|.|.|..+.....
T Consensus 132 ~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~s~L~i~~~~-~~d-g~Y~C~a~n~~~~~~~~ 208 (434)
T 1igy_B 132 QTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL-SSSVTVPSSP-RPS-ETVTCNVAHPASSTKVD 208 (434)
T ss_dssp CCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEE-EEEEEEETTT-TTS-SCCEEEEECTTTTCCEE
T ss_pred CCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEE-EEEEEEcchh-cCC-CcEEEEEEeCCCCccce
Confidence 589999999999885 765 9999999875421100 0001133333 3579999999 889 99999999988774433
Q ss_pred EEEEEEe-------c-C---CCccCCCCCceEEeeCCCeEEEEeecCCCC----CCeEEEEECCEEecCCCcEE------
Q psy14886 79 AQLRVLT-------L-K---PSFKKRPLESETYAGEGGNVTIFCNPEAAP----KPKFVWKKDGNIIGSGGRRK------ 137 (505)
Q Consensus 79 ~~l~v~~-------~-~---p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~g~~~~~~~~~~------ 137 (505)
..+.+.. . . |.+...+......+.+|+.+.|.|.+.|.+ .+.|.|++++..+.......
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~ 288 (434)
T 1igy_B 209 KKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFN 288 (434)
T ss_dssp EECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCS
T ss_pred eeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCC
Confidence 3332210 0 0 222221111111178899999999999884 35899999987764321110
Q ss_pred --EeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE----EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCC
Q psy14886 138 --IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211 (505)
Q Consensus 138 --~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 211 (505)
....+.|.|.++..+|+|.|+|.|.|..|.......+ .+..+|.+....+... ...|..+.|.|.+.+.+++.
T Consensus 289 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~ 367 (434)
T 1igy_B 289 STFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPED 367 (434)
T ss_dssp SSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSC
T ss_pred CcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCC
Confidence 0113469999999999999999999988865332222 2223444433322221 23466799999999976556
Q ss_pred eEEEEEeCCEEecCCCCCcc--cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 212 VAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 212 ~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
+.+.|+++|..+........ .........+.|.+.....++.|.|+|.|.|....
T Consensus 368 ~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 368 ITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp EEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred eEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 78899999987743210000 00000111134566666667799999999997654
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-22 Score=198.44 Aligned_cols=217 Identities=19% Similarity=0.337 Sum_probs=160.6
Q ss_pred CCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCC-CceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCC------
Q psy14886 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-GGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWN------ 321 (505)
Q Consensus 250 ~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p-~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~------ 321 (505)
.+..|.+.| +.|..|..-......+...|.+| .++.+..+..+++.|+|.++.+ ++.++. |.|+|+....
T Consensus 132 ~~c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~ 209 (680)
T 1zlg_A 132 NECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSED 209 (680)
T ss_pred ccCCCcccc-ccccccccccccceeeecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCcc
Confidence 345666777 34555653222223357788888 7999999999999999999864 456667 9999997632
Q ss_pred --CCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCC-CCCCCCceeeeecc
Q psy14886 322 --STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD-KPYQAPSRIGGGGG 398 (505)
Q Consensus 322 --~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~-~p~~~P~~~~~~~~ 398 (505)
..|..+... ....+.+.+ |.|++.|.|+|.|.|..|.+.++.....+.+... .|+.+|.++.+...
T Consensus 210 ~~~~w~~v~~~----------~~~~~~i~~-L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~ 278 (680)
T 1zlg_A 210 DATHWQTVAQT----------TDERVQLTD-IRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANS 278 (680)
T ss_pred ccCceEEEEec----------CCCeEEeCC-CCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeee
Confidence 567765431 223445555 9999999999999999995545555446666554 78889999999877
Q ss_pred --ccc---cEEEEEEeCCccccCCCCceEEEEEEEc-C------CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 399 --KIG---DLSISWEPLPREKQNAPNIYYKIFWRKK-N------DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 399 --~~~---~v~l~W~~~~~~~~~~~i~~Y~v~~~~~-~------~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
+.+ +|.|.|++ +.+.+++|.+|+|+|+.. + ...|....+.. ..+.+.|.+|.|++.|.|+|.
T Consensus 279 ~~~~~g~~sv~l~W~p--P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~l~~L~p~t~Y~~~V~ 352 (680)
T 1zlg_A 279 TVNSDGSVTVTIVWDL--PEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDG----FQNSVILEKLQPDCDYVVELQ 352 (680)
T ss_pred eecCCCceEEEEEecC--CCCCCCceeEEEEEEEecccccccCCccceEEEEEcC----CeeEEEeCCCCCCCEEEEEEE
Confidence 777 99999998 445679999999999932 1 22455443332 346789999999999999999
Q ss_pred EecCCCCCCCCce---EEEeec
Q psy14886 467 AINDVGPGPESEV---VTIWHD 485 (505)
Q Consensus 467 a~n~~G~g~~s~~---~~~~t~ 485 (505)
|+|.+|.|++|.. +.+.|.
T Consensus 353 A~n~~G~g~~S~~~~~v~~~T~ 374 (680)
T 1zlg_A 353 AITYWGQTRLKSAKVSLHFTST 374 (680)
T ss_pred EEECCCcCCCCCCceeEEEECC
Confidence 9999999999987 666664
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=173.07 Aligned_cols=260 Identities=17% Similarity=0.136 Sum_probs=171.9
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
..+.+..|++++|.|.+.+.+ .+.|.|++++..+..........++.|.|.++...|+|.|+|. ..|.....+.|.
T Consensus 14 ~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~ 90 (325)
T 1n26_A 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLL 90 (325)
T ss_dssp TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE---SSSSCSCEEEEE
T ss_pred CcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEE---eCCEEeeeEEEE
Confidence 334457999999999988764 6799999987655322222334567899999999999999999 367777778899
Q ss_pred EEeCCeeeeeCCCceEEE-eeccEEEEEEeeecC----CCCeEEEEEeC-C---EEecCCCCCcccCCee-eecCCeEEE
Q psy14886 176 VLHGPSYYEQLPPKITIA-AHRNLQLRCSAHTEE----LLDVAYIWTHN-G---VRIGNMDLNELETPNI-NIDGGLLEI 245 (505)
Q Consensus 176 v~~~p~~~~~~~~~~~~~-~g~~~~l~C~~~~~~----~~~~~~~w~~~-~---~~~~~~~~~~~~~~~~-~~~~~~l~i 245 (505)
|..+|.. +. +... .+....+.|.+.... ...+.+.+.+. + ..... .. ... ......+.+
T Consensus 91 V~~pP~~----P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~c-----~~~~~~~~~~c~i 159 (325)
T 1n26_A 91 VDVPPEE----PQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQE-PC-----QYSQESQKFSCQL 159 (325)
T ss_dssp ECCCCCC----CC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEE-EE-----EEETTTTEEEEEE
T ss_pred eccCCCC----Cc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccc-cC-----CCCCCCCCEEEEE
Confidence 8776642 22 3333 344446666665321 11223333221 1 00000 00 000 001124556
Q ss_pred ecCC-CCCCEEEEEEEEecCCcEEE-EEEEEE--cCCCCCCCceEEEEEeC--CeEEEEeecCCC--CCCCCceEEEEEE
Q psy14886 246 TNAS-FADAGEYECVVKSTVGKIST-KTTVIV--EGPPGLPGGVQVVEVHK--TSATIQWTDGAT--NGRPITHYKIIAR 317 (505)
Q Consensus 246 ~~~~-~~~~g~y~C~~~n~~g~~~~-~~~l~v--~~~p~~p~~~~~~~~~~--~~v~l~w~~~~~--~~~~i~~y~v~~~ 317 (505)
..+. ....+.|+|.|.|..|.... ...+.+ ..+|.+|.++.+..... +++.|+|++|.. .+..+..|.|+|+
T Consensus 160 ~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr 239 (325)
T 1n26_A 160 AVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYR 239 (325)
T ss_dssp CCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEE
T ss_pred CCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEE
Confidence 6554 34677889999999998542 223322 35688998888877653 589999999875 4567899999999
Q ss_pred eCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCcc
Q psy14886 318 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380 (505)
Q Consensus 318 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~ 380 (505)
......|....... ....+.+.+ |.+++.|+|||+|.|..|.|.+|.++..+.
T Consensus 240 ~~~~~~W~~~~~~~---------~~~~~~l~~-L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~ 292 (325)
T 1n26_A 240 AERSKTFTTWMVKD---------LQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEWSPEAM 292 (325)
T ss_dssp ETTCSCCEEEECGG---------GCSEEEESS-CCTTCCEEEEEEEEETTTBSCCCCCCCCEE
T ss_pred eCCCCCCEEEcccC---------CceEEEEeC-CCCCCeEEEEEEEecCCCCCCCcCCCCccc
Confidence 98888898754321 122444444 999999999999999999999999875543
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=177.49 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=120.1
Q ss_pred CCCCceEEEEEE---eccCCCeEEEEECCEECcCCC----------CCCCCCCcEEE--E--CCeEEEEcCCCCCCCeEE
Q psy14886 2 DNQADLTWTCEA---FGVPDVTYSWFRNGELLNSET----------LPLEDQDRYFI--Q--DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 2 ~~G~~~~l~C~~---~~~p~~~~~W~~~~~~l~~~~----------~~~~~~~~~~~--~--~~~L~i~~~~~~~d~G~Y 64 (505)
..|++++|.|.+ .+.|.+.|+|+|+|..+.... ......+++.+ . ..+|.|.+++ .+|+|.|
T Consensus 6 ~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y 84 (203)
T 4fa8_A 6 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAAN-ISHDGNY 84 (203)
T ss_dssp ETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCC-GGGCEEE
T ss_pred EcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCC-HHHCeEE
Confidence 479999999964 567899999999864332100 00001122322 1 2479999999 9999999
Q ss_pred EEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEec----CCCcEEEee
Q psy14886 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG----SGGRRKIFE 140 (505)
Q Consensus 65 ~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~----~~~~~~~~~ 140 (505)
+|.|.|..|.....+.|.|.. ||.+...+ ....+.+|+++.|.|.+.|.|.|.|.|++++..+. ...++....
T Consensus 85 ~C~a~n~~g~~~~~~~l~V~~-p~~~~~~~--~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~ 161 (203)
T 4fa8_A 85 LCRMKLGETEVTKQEHLSVVK-PLTLSVHS--ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK 161 (203)
T ss_dssp EEEEEETTEEEEEEEEEEEEE-EEEEEEEE--EECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT
T ss_pred EEEEEcCCCcEEEEEEEEecC-Cceeeecc--eeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC
Confidence 999999988888888888885 55554433 44567899999999999999999999998665432 244566667
Q ss_pred CCCEEE---cCCCCCCCEEEEEEEEcCCCceee
Q psy14886 141 NGNLLI---SPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 141 ~~~l~i---~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
+++|.+ .++..+|+|.|+|.|.|..|....
T Consensus 162 ~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 162 DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 777655 588999999999999999998764
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=166.86 Aligned_cols=159 Identities=19% Similarity=0.445 Sum_probs=127.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE--EE----CCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF--IQ----DNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~--~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.. ..+.. .. .++|.|.+++ .+|+|.|+|.+.+..+.
T Consensus 14 v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~~~ 85 (182)
T 1rhf_A 14 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN-------LDQLYIPVSEQHWIGFLSLKSVE-RSDAGRYWCQVEDGGET 85 (182)
T ss_dssp EETTCCEEEEEEEESCSSCCEEEEETTEECCS-------SEEEEEEEETTEEEEEEEESSCC-GGGCEEEEEEESSCTTC
T ss_pred EeCCCcEEEEEEEeCCCCCeEEEEECCeecCC-------CCceEEEecCCCceEEEEEeecC-cccCeEEEEEEEcCCCc
Confidence 36899999999999988899999999998873 22332 22 2689999999 99999999999988665
Q ss_pred eE-eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 75 RY-SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 75 ~~-~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
.. ..+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..... ....|.|.++ +
T Consensus 86 ~~~~~~~l~V~~-~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~----~~~~L~i~~~--~ 156 (182)
T 1rhf_A 86 EISQPVWLTVEG-VPFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----SPSVLNVTGV--T 156 (182)
T ss_dssp EECCCEEEEEEC-SCEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----SSEEEEECCC--S
T ss_pred EEEEEEEEEEec-CCeEEecC--cceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC----CceEEEEecc--c
Confidence 43 467888885 67666654 34678999999999999999998 9999999998864321 4556889887 5
Q ss_pred CCEEEEEEEEcCCCceee-eEEEEE
Q psy14886 153 DSGIYSCTATNVHGMDES-KGRLIV 176 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~~-~~~l~v 176 (505)
|+|.|+|.|.|..|.... .+.|.|
T Consensus 157 d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 157 QSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCeEEEEEEECCCCCcccceEEEEe
Confidence 899999999999988754 566665
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-21 Score=173.71 Aligned_cols=263 Identities=18% Similarity=0.244 Sum_probs=177.6
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~ 162 (505)
+|.+...+ ....+.+|+.+.|.|.+.+.|. .+.|++ +|..+....+..+..++ .|.|.++..+|+|.|+|.+.
T Consensus 4 ~p~v~~~~--~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~ 80 (291)
T 2wim_A 4 LLQVTISL--SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 80 (291)
T ss_dssp CCEEEESC--SEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CceEEEec--cceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEe
Confidence 44454444 4567999999999999998875 999999 77777666666665554 69999999999999999999
Q ss_pred cCCCcee-eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC
Q psy14886 163 NVHGMDE-SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241 (505)
Q Consensus 163 ~~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (505)
+..|... ..+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.+.+ .+.|++++..+..... .......+.
T Consensus 81 n~~g~~~~~~~~l~v~~~~~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~----~~~~~~~~~ 153 (291)
T 2wim_A 81 DAKGQTQEATVVLEIYQKLTFRE-VVSPQEFKQGEDAEVVCRVSSSPAP--AVSWLYHNEEVTTISD----NRFAMLANN 153 (291)
T ss_dssp CSSSCEEEEEEEEEEECCCBCCS-CCCSEEEETTSCEEECCCCBCSSCC--EEEEECC----CBCCC----SSEEECTTS
T ss_pred cccCceEEEEEEEEecCCcceEe-CCCChhhcCCCCEEEEEEEccCCCC--EEEEEECCccccccCC----ceEEEccCC
Confidence 9888764 456777766665443 3456678899999999999987655 5679998877653211 122223456
Q ss_pred eEEEecCCCCCCEEEEEEEEecCCcE--EEEEEEEEcCCCCCCCce---EEEEEeCCeEEEEeecCCCCCCCCceEEEEE
Q psy14886 242 LLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLPGGV---QVVEVHKTSATIQWTDGATNGRPITHYKIIA 316 (505)
Q Consensus 242 ~l~i~~~~~~~~g~y~C~~~n~~g~~--~~~~~l~v~~~p~~p~~~---~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~ 316 (505)
.|.|..+..+|.|.|+|.+.|..+.. ...+.+.+..+|...... ......+..+.|.|... +.|...+.|..
T Consensus 154 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~---g~p~p~v~W~~ 230 (291)
T 2wim_A 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS---GSPEPAISWFR 230 (291)
T ss_dssp CEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCC---CBSCCEEEEEE
T ss_pred CEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEee---cCCCCeEEEEE
Confidence 89999999999999999999987553 355667777766543211 22334577899999842 33333344332
Q ss_pred EeCCCCCeEEeeeccccceeeee-cCceeeEEeeeccCCceeEEEEEEEcCCCcCCCC
Q psy14886 317 RTNWNSTWFNVSEHVIGKEVDRY-TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373 (505)
Q Consensus 317 ~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s 373 (505)
. ...+........ .....+.+.. +...+.+.|+|.|.|..|....+
T Consensus 231 --~--------g~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~a~N~~G~~~~~ 277 (291)
T 2wim_A 231 --N--------GKLIEENEKYILKGSNTELTVRN-IINSDGGPYVCRATNKAGEDEKQ 277 (291)
T ss_dssp --T--------TEECCCTTTEEECSTTCEEEEES-CCSTTCEEEEEEEEETTEEEEEE
T ss_pred --C--------CEECcCCccEEEcCCccEEEEee-CCcccCEEEEEEEEECCCceeee
Confidence 1 111110000011 1223455555 99999999999999999987543
|
| >3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=167.33 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=147.9
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.+|++|.++.+......++.++|+++.+.+.+ ..|.|+|+..+...|..+...... ......+...+|.+++.
T Consensus 2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~~~~~-~~Y~l~y~~~~~~~~~~c~~~~~~------~~~~c~~~~~~l~~~~~ 74 (210)
T 3n06_B 2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITG------GPNSCHFGKQYTSMWRT 74 (210)
T ss_dssp CCCCCCEEEEEEBSSSSCEEEEEECCSSSCCC-SEEEEEEEETTCCCCEECSCSSTT------CTTEEEECGGGCCSSSC
T ss_pred CCCCCCeEeEEEeCCCCeEEEEECCCCCCCCC-ceEEEEEEECCCCccccCCCCCCC------CCeEEEeCCCCccccee
Confidence 57999999999888999999999998866554 689999998776778776432210 01112222234899999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc----ccccEEEEEEeCCcccc-CC-CCceEEEEEEEcC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG----KIGDLSISWEPLPREKQ-NA-PNIYYKIFWRKKN 430 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~----~~~~v~l~W~~~~~~~~-~~-~i~~Y~v~~~~~~ 430 (505)
|.|+|.|.|..|.+.. ... .+.+....++.||.++.+... ..+++.|+|++|..... +| .+++|.|+|+..+
T Consensus 75 Y~~~V~A~N~~G~~~s-~~~-~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~ 152 (210)
T 3n06_B 75 YIMMVNATNQMGSSFS-DEL-YVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEK 152 (210)
T ss_dssp EEEEEEEEETTEEEEC-CCE-EECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTT
T ss_pred EEEEEEEEcCCCCeeC-CcE-EEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCC
Confidence 9999999999998843 222 345555667789999988744 35899999999544332 24 5689999999988
Q ss_pred CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCC-CCCCceEEEeec
Q psy14886 431 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP-GPESEVVTIWHD 485 (505)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~-g~~s~~~~~~t~ 485 (505)
...|..... ...+.+.|.+|.|++.|.|+|+|.|..|. |++|+.+.+.|+
T Consensus 153 ~~~~~~~~~-----~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp 203 (210)
T 3n06_B 153 AAEWEIHFA-----GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIP 203 (210)
T ss_dssp CSSCEEEEE-----ETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred CCCCEEEec-----cCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECc
Confidence 778875421 12357889999999999999999999998 999999999885
|
| >1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-21 Score=173.58 Aligned_cols=259 Identities=15% Similarity=0.186 Sum_probs=169.5
Q ss_pred eEEeeCCCeEEEEeecCC-------CCCCeEEEEECCEEecCCCcEEEeeC--CCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 98 ETYAGEGGNVTIFCNPEA-------APKPKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~-------~p~~~i~W~~~g~~~~~~~~~~~~~~--~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+..+..|++++|.|.+.+ .|.+.|.|+++|..+... ++.+... +.|.|.++...+ |.|+|.|.+. |..
T Consensus 13 ~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~ 89 (303)
T 1i1r_A 13 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASLN-IQLTCNILTF-GQL 89 (303)
T ss_dssp SCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEETTEEEEEECSCCCSE-EEEEEEEEET-TTE
T ss_pred CceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeeeCCcEEEEEEcCcCCCc-eEEEEecccC-CCc
Confidence 356889999999999985 477899999999988643 4344332 369999999884 9999999874 333
Q ss_pred e---eeEEEEEEeCCeeeeeCCCceEEEe--eccEEEEEEeeecCC--CCeEEEEEeCCEEecCCCCCcccCCeeeecCC
Q psy14886 169 E---SKGRLIVLHGPSYYEQLPPKITIAA--HRNLQLRCSAHTEEL--LDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241 (505)
Q Consensus 169 ~---~~~~l~v~~~p~~~~~~~~~~~~~~--g~~~~l~C~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (505)
. ..+.+.+..+|.. +..+.+.. ...+.|.|....... ..+.+.+...+..... . ........
T Consensus 90 ~~~~~~~~l~v~~~P~~----P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~-----~--~~~~~~~~ 158 (303)
T 1i1r_A 90 EQNVYGITIISGLPPEK----PKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFAD-----C--KAKRDTPT 158 (303)
T ss_dssp EEEEEEEEEEEECCCCC----CEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCC-----E--ECCSSCTT
T ss_pred ceEEEEEEEeccCCCCC----CeeeEEEECCCCcEEEEccCCCCCCCCcCEEEEEEecCCCCcc-----C--CCcCCCce
Confidence 2 2244555444432 22222222 134555554332211 1233333332221100 0 00111235
Q ss_pred eEEEecC-CCCCCEEEEEEEEecCCcEEE-EEEEEE--cCCCCCCCceEEEEE--eCCeEEEEeecCCCCCCCCceEEEE
Q psy14886 242 LLEITNA-SFADAGEYECVVKSTVGKIST-KTTVIV--EGPPGLPGGVQVVEV--HKTSATIQWTDGATNGRPITHYKII 315 (505)
Q Consensus 242 ~l~i~~~-~~~~~g~y~C~~~n~~g~~~~-~~~l~v--~~~p~~p~~~~~~~~--~~~~v~l~w~~~~~~~~~i~~y~v~ 315 (505)
.+.+..+ .....+.|++.|.|..|.... ...+.. ..+|.+|..+.+... ..+++.|+|++|...++++.+|.|+
T Consensus 159 ~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~ 238 (303)
T 1i1r_A 159 SCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQ 238 (303)
T ss_dssp EEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEE
T ss_pred EEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEE
Confidence 6788888 778889999999999998643 222222 246888888877654 5689999999998767789999999
Q ss_pred EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCC
Q psy14886 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377 (505)
Q Consensus 316 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 377 (505)
|+..+...|..+..... ......+.+.+|.+++.|.|+|+|.|..|.|.+|.++.
T Consensus 239 y~~~~~~~w~~~~~~~~-------~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~ 293 (303)
T 1i1r_A 239 YRTKDASTWSQIPPEDT-------ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 293 (303)
T ss_dssp EEETTCSSCEECCGGGG-------CSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCC
T ss_pred EEeCCCCCceEEccccC-------CCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCC
Confidence 99988788987532100 01223344444999999999999999999999988763
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=171.88 Aligned_cols=173 Identities=21% Similarity=0.361 Sum_probs=130.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcC-----CCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC--
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNS-----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK-- 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~-- 73 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.. .........++...+++|.|.+++ .+|+|.|+|.+.+..+
T Consensus 13 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~-~~D~G~Y~C~~~~~~g~~ 91 (212)
T 1f97_A 13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT-RKDNGEYTCMVSEEGGQN 91 (212)
T ss_dssp EETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCC-GGGCEEEEEEEEETTSSS
T ss_pred EEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccC-cccCeEEEEEEEccCCCc
Confidence 35899999999999889999999998755210 000111356778888999999999 9999999999998866
Q ss_pred ceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEee-cCCCCCCeEEEEECCE-EecCCCc---------EEE-eeC
Q psy14886 74 TRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGN-IIGSGGR---------RKI-FEN 141 (505)
Q Consensus 74 ~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~-~~~~~~~---------~~~-~~~ 141 (505)
.....+.|.|.. +|.+...+. ...+.+|+.+.|.|. +.+.|.+.+.|++++. .+..... +.. ...
T Consensus 92 ~~~~~~~l~V~~-~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (212)
T 1f97_A 92 YGEVSIHLTVLV-PPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168 (212)
T ss_dssp EEEEEEEEEEEB-CCCCCEEEC--CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTT
T ss_pred ccEEEEEEEEEc-CCCCcccCC--ccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCC
Confidence 345567777875 555443332 245789999999999 7888999999999998 7754322 222 235
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEEEE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVL 177 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~v~ 177 (505)
+.|.|.++..+|.|.|+|.|.|..|.. ...+.|.|.
T Consensus 169 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 169 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp CCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred ceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 679999999999999999999999988 444666664
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=169.46 Aligned_cols=253 Identities=13% Similarity=0.101 Sum_probs=175.6
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
....+.|.|.....+...+.+.|...... ... ...........+.+.++.....+.|+..|.|..|... ...+
T Consensus 27 ~~~sv~l~W~~~~~~~~~Y~v~~~~~~~~---~~~---~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~ 99 (283)
T 1tdq_A 27 SDTVAFVEWTPPRAKVDFILLKYGLVGGE---GGK---TTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESD-ASST 99 (283)
T ss_dssp CSSCEEEEEECCSSCCSEEEEEEEESSSS---CCC---EEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECC-CEEE
T ss_pred CCCeEEEEEECCCCceeEEEEEEEEecCC---CCc---EEEEeCCCCCEEEecCCCCCCEEEEEEEEECCCCCCC-CeeE
Confidence 34567788876542333445555321100 000 0011122346788889988888888889988776643 3445
Q ss_pred EEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecC-ceeeEEeeecc
Q psy14886 274 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLV 352 (505)
Q Consensus 274 ~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~L~ 352 (505)
....+|.+|.++.+.....+++.|+|+++. +.+.+|.|+++......|........ .. ...+.+. +|.
T Consensus 100 ~~~t~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~-~L~ 168 (283)
T 1tdq_A 100 QFTTEIDAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVLVPKG-------IGPTTKTTLT-DLV 168 (283)
T ss_dssp EEECCCCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCCCEEEEEECC-------SSSEEEEEEC-SCC
T ss_pred EEECCCCCCCceEEEecCCCeEEEEecCCC---CCccEEEEEEEeCCCCcceEEECCCC-------CcccceEEEe-cCC
Confidence 566688899999999999999999999875 46899999999876665543321100 01 2344454 499
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~ 432 (505)
+++.|.|+|.|.|..|.+.+... ...+ .+.+|.++.+.....+++.|.|+++ ++.+.+|+|+|+..++.
T Consensus 169 p~t~Y~~~V~A~n~~g~s~~~~~--~~~t----~~~~P~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~~ 237 (283)
T 1tdq_A 169 PGTEYGVGISAVMNSKQSIPATM--NART----ELDSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSGI 237 (283)
T ss_dssp TTCEEEEEEEEEETTEECCCEEE--EEEC----CCCCCEEEEEEEECSSCEEEEEECC-----CSCCSEEEEEEECSSSC
T ss_pred CCCEEEEEEEEEeCCCCCcceEE--EecC----CCCCCCccEEeEecCCEEEEEEeCC-----CCcccEEEEEEEcCCCC
Confidence 99999999999999998754321 1222 2337789999888889999999983 47799999999987643
Q ss_pred CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceE
Q psy14886 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480 (505)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~ 480 (505)
+....... ....+.|.+|.|++.|.|+|+|+|..|.|+++.+.
T Consensus 238 -~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~ 280 (283)
T 1tdq_A 238 -SSEVTVPR----DRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD 280 (283)
T ss_dssp -CEEEEEES----SCSEEEECCCCTTCCEEEEEEEEETTEECCCEEEE
T ss_pred -eeEEEeCC----CccEEEECCCCCCCEEEEEEEEEcCCCCCcceeeE
Confidence 33232222 34578999999999999999999999999987653
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=175.05 Aligned_cols=254 Identities=20% Similarity=0.304 Sum_probs=169.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEE-CCEEecC-CCcEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCCce-
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKK-DGNIIGS-GGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMD- 168 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~-~g~~~~~-~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g~~- 168 (505)
....+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+.. ..+..+.. ...|.|.++..+|+|.|+|.+.|..|..
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~ 89 (291)
T 1qz1_A 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS 89 (291)
T ss_dssp SSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEE
T ss_pred CCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCee
Confidence 445689999999999999886 68999999 7877754 33444332 2469999999999999999999988643
Q ss_pred eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecC
Q psy14886 169 ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248 (505)
Q Consensus 169 ~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 248 (505)
...+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .......+..|.|..+
T Consensus 90 ~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~--~v~W~~~~~~~~~~~~----~~~~~~~~~~L~i~~~ 162 (291)
T 1qz1_A 90 EATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDVILKKD----VRFIVLSNNYLQIRGI 162 (291)
T ss_dssp EEEEEEEEECCSEEEE-CCSSEEEETTSCEEECCEEECSSCC--EEEEEETTSCSSTTCC----TTEEECTTSCEEETTC
T ss_pred EEEEEEEeeccccccC-CCCcccccCCCeEEEEEEeccCCCC--EEEEEECCEEcccCCC----ceEEEccCCcEEEccC
Confidence 4557777766665543 4556778899999999999988765 5779999877643211 1222334568999999
Q ss_pred CCCCCEEEEEEEEecCCcE--EEEEEEEEcCCCCCCC---ceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC
Q psy14886 249 SFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323 (505)
Q Consensus 249 ~~~~~g~y~C~~~n~~g~~--~~~~~l~v~~~p~~p~---~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~ 323 (505)
..+|.|.|+|.|.|..+.. ...+.+.+..+|.... ........+..+.|.|... +.|...+.
T Consensus 163 ~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~---g~p~p~i~---------- 229 (291)
T 1qz1_A 163 KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD---GFPEPTMS---------- 229 (291)
T ss_dssp CGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEE---EESCCEEE----------
T ss_pred ccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEE---EeCCCcEE----------
Confidence 9999999999999976443 3456666665543211 1122233456777777632 12222233
Q ss_pred eEEeeeccccce----eeeec-CceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 324 WFNVSEHVIGKE----VDRYT-GRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 324 w~~~~~~~~~~~----~~~~~-~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
|......+.... ..... ....+.+.+ +...+.+.|+|.|.|..|...
T Consensus 230 W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~ 281 (291)
T 1qz1_A 230 WTKDGEPIENEEEDDEKHIFSDDSSELTIRN-VDKNDEAEYVCIAENKAGEQD 281 (291)
T ss_dssp EEETTEECCCC--CCSSEEECTTSCEEEECS-CCGGGCEEEEEEEEETTEEEE
T ss_pred EEECCEECcCCCCCCcceEEcCCCcEEEEEe-cChhcCEEEEEEEEeCCCceE
Confidence 332222211100 00111 223344444 999999999999999998753
|
| >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=176.30 Aligned_cols=273 Identities=10% Similarity=0.062 Sum_probs=166.6
Q ss_pred eEEeeCCCeEEEEeecCCC-----CCCeEEEEECCEEecCCCcEEEeeC----CCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 98 ETYAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
...+..|++++|.|.+.+. |.+.|.|+++|..+..+ +.....+ +.|.|.++...|+|.|.|.+.+..+..
T Consensus 9 ~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~ 87 (313)
T 2d9q_B 9 APIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQI 87 (313)
T ss_dssp CSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEE
T ss_pred CcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCcee
Confidence 3458899999999999986 56899999999877532 2222222 359999999999999999886654444
Q ss_pred eeeEEEEEEeCCeeeeeCCCceEEEee-ccEEEEEEeeecC--CC--CeEEEEEeCCEEecCCCCCcccCCee--eecCC
Q psy14886 169 ESKGRLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTEE--LL--DVAYIWTHNGVRIGNMDLNELETPNI--NIDGG 241 (505)
Q Consensus 169 ~~~~~l~v~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~~--~~--~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~ 241 (505)
...+.|.+..+|.. +..+.+... ..-.+.|.+.... .. .+.+.+...+....... ...... .....
T Consensus 88 ~~~~~l~v~~~P~~----P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~---~~~~~~~~~~~~~ 160 (313)
T 2d9q_B 88 LDQVELRAGYPPAI----PHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQG---DSILDCVPKDGQS 160 (313)
T ss_dssp EEEEEEEECCCCCC----CEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCC---CCEEEECCCTTCS
T ss_pred EEEEEEccCCCCCC----CccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCC---cccccCCCCCCCc
Confidence 44566777555532 223333222 2233444443221 11 12223322211000000 000000 01123
Q ss_pred eEEEec--CCCCCCEEEEEEEEecCCcEEE-EEEEEEc--CCCCCCCceEEEEE------eCCeEEEEeecCCCCCCCCc
Q psy14886 242 LLEITN--ASFADAGEYECVVKSTVGKIST-KTTVIVE--GPPGLPGGVQVVEV------HKTSATIQWTDGATNGRPIT 310 (505)
Q Consensus 242 ~l~i~~--~~~~~~g~y~C~~~n~~g~~~~-~~~l~v~--~~p~~p~~~~~~~~------~~~~v~l~w~~~~~~~~~i~ 310 (505)
...+.. +.....+.|++.|.|..|.... ...+... .+|.+|.++.+... ..+++.|+|++|...+..+.
T Consensus 161 ~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l 240 (313)
T 2d9q_B 161 HCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQ 240 (313)
T ss_dssp EEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCE
T ss_pred EEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeE
Confidence 455543 6777788899999999998532 2223322 36888888777655 46899999999875454457
Q ss_pred eEEEEEE-eCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCC--CccCCCCCCC
Q psy14886 311 HYKIIAR-TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPADKPY 387 (505)
Q Consensus 311 ~y~v~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--~~~t~~~~p~ 387 (505)
.|+|+|+ ..+...|........ ....+.+. +|.+++.|.|||+|.|..|.|.+|.++. .+.|.+.+|.
T Consensus 241 ~Y~v~y~~~~~~~~w~~~~~~~~--------~~~~~~l~-~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~ 311 (313)
T 2d9q_B 241 KCELRHKPQRGEASWALVGPLPL--------EALQYELC-GLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311 (313)
T ss_dssp EEEEEEEESSSCCCCEEEEEECS--------CEEEEEEC-SCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred EEEEEEccCCCCCCcEEcccccC--------cceEEEEe-CCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence 9999999 666778987532211 12334444 4999999999999999999998777753 3455555553
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=173.08 Aligned_cols=179 Identities=22% Similarity=0.359 Sum_probs=135.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+.|.+.+.|+|++..+...... ..........+|.|.+++ .+|+|.|+|.+.|..+.....+.
T Consensus 31 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~~~~~~~~~ 107 (231)
T 3ojm_B 31 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI--GGYKVRNQHWSLIMESVV-PSDKGNYTCVVENEYGSINHTYH 107 (231)
T ss_dssp EETTSCEEEECCEEEESCCEEEEEETTEECCGGGST--TCCEEEGGGTEEEECSCC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred EccCCCEEEEEecccCCCCeEEEEECCccccccccc--cceeeecCcceEEEecCC-cccCEEEEEEEecccCcccccEE
Confidence 358999999999999999999999999988632110 001222245689999999 99999999999998888777888
Q ss_pred EEEEecCCC--ccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE----CCEEecCCCcEE--Ee--------eCCCE
Q psy14886 81 LRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK----DGNIIGSGGRRK--IF--------ENGNL 144 (505)
Q Consensus 81 l~v~~~~p~--~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~----~g~~~~~~~~~~--~~--------~~~~l 144 (505)
|.|...++. ...........+.+|+.+.|.|.+.+.|.+.+.|++ +|..+..+.... .. ..+.|
T Consensus 108 l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L 187 (231)
T 3ojm_B 108 LDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187 (231)
T ss_dssp EEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEE
T ss_pred EEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEE
Confidence 888752221 112222355678999999999999999999999999 777665432211 11 12359
Q ss_pred EEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCee
Q psy14886 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182 (505)
Q Consensus 145 ~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~ 182 (505)
.|.++...|+|.|+|.|.|..|.....+.|.|..+|..
T Consensus 188 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred EEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence 99999999999999999999999988899999876654
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=176.00 Aligned_cols=179 Identities=25% Similarity=0.373 Sum_probs=133.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.+.|.+.+.|+|++..+..... ...........+|.|.+++ .+|+|.|+|.+.+..+.....+.
T Consensus 27 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~~~~~~~~~ 103 (241)
T 3grw_A 27 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR--IGGIKLRHQQWSLVMESVV-PSDRGNYTCVVENKFGSIRQTYT 103 (241)
T ss_dssp EETTSEEEEECCEECSSCCEEEEEETTEECCGGGS--TTCCEEEGGGTEEEECSCC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred EcCCCeEEEEEEecCCCCceeEEEECCcccCCCCc--ccceeeeccceEEEEEeCC-cccCEEEEEEEeecCCceEEEEE
Confidence 35899999999999999999999999998864211 0111222345789999999 99999999999998888777888
Q ss_pred EEEEecCCCc--cCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE----CCEEecCCCcEEE-----------eeCCC
Q psy14886 81 LRVLTLKPSF--KKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK----DGNIIGSGGRRKI-----------FENGN 143 (505)
Q Consensus 81 l~v~~~~p~~--~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~----~g~~~~~~~~~~~-----------~~~~~ 143 (505)
+.|...++.. ..........+.+|+.+.|.|.+.+.|.+.+.|++ +|..+..+..... .....
T Consensus 104 l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (241)
T 3grw_A 104 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183 (241)
T ss_dssp EEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEE
T ss_pred EEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceE
Confidence 8887532221 11111344668899999999999999999999999 7877654332111 02345
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCee
Q psy14886 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182 (505)
Q Consensus 144 l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~ 182 (505)
|.|.++..+|.|.|+|.|.|..|.....+.|.|..+|..
T Consensus 184 L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~ 222 (241)
T 3grw_A 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA 222 (241)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred EEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence 999999999999999999999999988899998776654
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=171.51 Aligned_cols=251 Identities=17% Similarity=0.130 Sum_probs=174.7
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE-EE
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK-TT 272 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~-~~ 272 (505)
....+.|.|.........+.+.|...+..-.. ...........+.+..+.....+.|+..|.|..|..... ..
T Consensus 33 ~~~sv~l~W~~p~~~~~~Y~v~~~~~~~~~~~------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~ 106 (290)
T 3r8q_A 33 TPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPM------KEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGV 106 (290)
T ss_dssp CSSCEEEEEECCSSCCCEEEEEEEESSSSSCC------EEEEECTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEEEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEEEeCCCCCce------EEEEcCCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCccee
Confidence 34578888876643333456666543211000 001112234578888998888888899999888764332 23
Q ss_pred EEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 273 VIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 273 l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
+.....|.+|.++.+......++.|+|.++ ++.+.+|.|+++......+...... .....+.+.+ |.
T Consensus 107 ~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~~~~~~~---------~~~~~~~i~~-L~ 173 (290)
T 3r8q_A 107 VTTLENVSPPRRARVTDATETTITISWRTK---TETITGFQVDAVPANGQTPIQRTIK---------PDVRSYTITG-LQ 173 (290)
T ss_dssp EECCCCCCCCEEEEEEEECSSCEEEEEECC---SCCCCEEEEEEEESSSCCCEEEEEC---------TTCSEEEECS-CC
T ss_pred EecCCCCCCCceeEEEEcCCCeEEEEEeCC---CCcccEEEEEEEECCCCcceEEecC---------CCccEEEECC-CC
Confidence 333334677888999999999999999986 3568999999988765544332211 1223444554 99
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~ 432 (505)
+++.|.|+|.|.|..|.+.+... ...+ ++.+|.++.+...+.+++.|.|+++. +.+.+|.|+|+..+..
T Consensus 174 p~t~Y~~~V~A~n~~g~s~~~~~--~~~t----~p~~P~~l~~~~~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~ 242 (290)
T 3r8q_A 174 PGTDYKIYLYTLNDNARSSPVVI--DAST----AIDAPSNLRFLATTPNSLLVSWQPPR-----ARITGYIIKYEKPGSP 242 (290)
T ss_dssp TTCEEEEEEEEEETTEECCCEEE--EEEC----CCCCCEEEEEEEEETTEEEEEEECCS-----SCCCEEEEEEECTTSC
T ss_pred CCCEEEEEEEEEeCCcccCCEEE--EecC----CCCCCCccEEEeeCCCEEEEEEeCCC-----CcccEEEEEEEeCCCC
Confidence 99999999999999998865332 2222 24578899998888999999999842 4799999999998766
Q ss_pred CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
.|.... ......+.+.|.+|.|++.|.|+|+|+|..|.|++.
T Consensus 243 ~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~ 284 (290)
T 3r8q_A 243 PREVVP---RPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284 (290)
T ss_dssp CEECSS---CCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred cceeEe---ccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCcc
Confidence 554211 112234678999999999999999999999998764
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-22 Score=168.33 Aligned_cols=177 Identities=15% Similarity=0.276 Sum_probs=128.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCC------------CCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL------------PLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~------------~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.+.+.+.+.+.|+|++.......+ .....+|+.+ .+++|.|.+++ .+|+|.|+|.
T Consensus 11 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~-~~D~G~Y~C~ 89 (208)
T 3r4d_A 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT-MKDMGVYTLD 89 (208)
T ss_dssp EETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCC-GGGCEEEEEE
T ss_pred eecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccc-ccCCeEEEEE
Confidence 35899999999987778899999997543221000 0001334444 34689999999 9999999999
Q ss_pred EEccc-CceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC-CCEE
Q psy14886 68 AKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-GNLL 145 (505)
Q Consensus 68 ~~~~~-~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~-~~l~ 145 (505)
+.+.. +.....+.|.|...++...+...... +.+|+.+.|.|.+.+.| +.+.|+++|..+....+.....+ +.|.
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~ 166 (208)
T 3r4d_A 90 MTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILR 166 (208)
T ss_dssp EECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTTTEEE
T ss_pred EEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCCCEEE
Confidence 99875 44555677777753322222221222 78999999999999876 79999999999987767666544 6799
Q ss_pred EcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCCe
Q psy14886 146 ISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPS 181 (505)
Q Consensus 146 i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~ 181 (505)
|.++..+|.|.|+|.|.|..|...+. +.|.|..++.
T Consensus 167 i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 167 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp ESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred EeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 99999999999999999999987765 6676655443
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=166.71 Aligned_cols=236 Identities=17% Similarity=0.133 Sum_probs=165.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+... +..|.|.++..+|+|.|+|.+.+..+. ..+.+.
T Consensus 9 ~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~s--~~~~l~ 79 (262)
T 3rjd_A 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVNDSGEYRCQRGLSGRS--DPIQLE 79 (262)
T ss_dssp CCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEESSSCCC--CCEEEE
T ss_pred CcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CCeEEEecCCcccCeEEEEEEecCCcc--ccEEEE
Confidence 33568899999999999998877 99999999988643 456999999999999999999876543 356677
Q ss_pred EEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEE
Q psy14886 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255 (505)
Q Consensus 176 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 255 (505)
|..++.... +....+..|+.+.|.|.+.... +...+.|++++..+... .....|.|..+..+|.|.
T Consensus 80 v~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~-p~~~v~W~~~g~~~~~~-----------~~~~~l~i~~~~~~d~G~ 145 (262)
T 3rjd_A 80 IHRGWLLLQ--VSSRVFTEGEPLALRCHAWKDK-LVYNVLYYRNGKAFKFF-----------HWNSNLTILKTNISHNGT 145 (262)
T ss_dssp EECSSEEEE--ESCSEEETTSCEEEEEEEGGGC-CCEEEEEEETTEEEEEE-----------EECCCEEESSCCGGGCEE
T ss_pred EeccceEec--CCCeEEecCCeEEEEEEccCCC-CCceEEEEECCcccccc-----------CCCCeEEEEECChhhCEE
Confidence 766554332 3345678899999999994432 24577899999887431 235689999999999999
Q ss_pred EEEEEEecCCcEEEEEEEEEcCCCCCCCceEE----EEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeecc
Q psy14886 256 YECVVKSTVGKISTKTTVIVEGPPGLPGGVQV----VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHV 331 (505)
Q Consensus 256 y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~----~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~ 331 (505)
|+|.+.|..+..+..+.|.|..++.+|. +.. ....+..+.|.|........+...+.+.+...+ ..+
T Consensus 146 Y~C~~~n~~~~~~~~~~l~V~~~~~~p~-~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~--------~~~ 216 (262)
T 3rjd_A 146 YHCSGMGKHRYTSAGISVTVKELFPAPV-LNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGS--------KTL 216 (262)
T ss_dssp EEEEEESSSEEEEECEEEEEECSSCCCE-EEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETT--------EEE
T ss_pred EEEEEeCCCCccccceEEEeccCCCCCe-EeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCC--------cEe
Confidence 9999999998888888888886543332 211 234577899999853221112222222222211 111
Q ss_pred ccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcC
Q psy14886 332 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370 (505)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~ 370 (505)
. .......+.+.. +...+.+.|.|.|.|..|..
T Consensus 217 ~-----~~~~~~~L~i~~-v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 217 R-----GRNTSSEYQILT-ARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp E-----EEESCCEEEESS-CCGGGCEEEEEEEEETTSSC
T ss_pred c-----ccCCCceEEEEE-echhhCeEEEEEEEcccCce
Confidence 1 001223444555 89999999999999999964
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=168.60 Aligned_cols=157 Identities=20% Similarity=0.366 Sum_probs=127.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce-EeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR-YSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~-~~~~ 79 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+... .+++|.|.+++ .+|+|.|+|.+.+..+.. ...+
T Consensus 30 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~ 96 (218)
T 3k0w_A 30 VLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------------NTSELIFNAVH-VKDAGFYVCRVNNNFTFEFSQWS 96 (218)
T ss_dssp EETTSBEEEECEETTTTSSEEEEEETTEECTTC------------CSSEEEETTCC-GGGCEEEEEEEECTTCCEECCCE
T ss_pred EeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------------CCCEEEEccCC-hhhCeEeEEEEEcCCCCceeeEE
Confidence 358999999999999899999999999988632 25789999999 999999999999987755 3357
Q ss_pred EEEEEecC--------------CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEE
Q psy14886 80 QLRVLTLK--------------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL 145 (505)
Q Consensus 80 ~l~v~~~~--------------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~ 145 (505)
.|.|...+ |.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...|.
T Consensus 97 ~l~V~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~------~~~L~ 168 (218)
T 3k0w_A 97 QLDVCDIPESFQRSVDGVSESKLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------KKLYM 168 (218)
T ss_dssp EEEEECCCGGGCTTCCSBCCSSCEEEECC--CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC------SSEEE
T ss_pred EEEEEccCcccccccccccCCCceEEECC--CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC------CCEEE
Confidence 78887533 2222222 44678899999999999999999999999999886542 34699
Q ss_pred EcCCCCCCCEEEEEEEEcCCCcee-eeEEEEEEe
Q psy14886 146 ISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLH 178 (505)
Q Consensus 146 i~~v~~~d~G~y~C~~~~~~g~~~-~~~~l~v~~ 178 (505)
|.++..+|+|.|+|.|.|..|... ..+.|.|..
T Consensus 169 i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp ESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred EeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 999999999999999999888744 446777754
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=162.80 Aligned_cols=182 Identities=29% Similarity=0.402 Sum_probs=141.2
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC-CCcEEEeeCC-CEEEcCCCCCCCEEEEEEEEcC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG-NLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~-~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+.. ..+..+..++ .|.|.+++..|+|.|+|.+.+.
T Consensus 7 ~P~i~~~~--~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 7 APVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp EEEESSCC--CEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CceeecCc--cceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 34444443 456789999999999999888889999999998864 4455554443 5999999999999999999998
Q ss_pred CCce-eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeE
Q psy14886 165 HGMD-ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243 (505)
Q Consensus 165 ~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (505)
.|.. ...+.+.|..+|.+.. .+....+..|+.+.|.|.+.+.+.+ .+.|++++..+.... .......+.|
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~~~~~------~~~~~~~~~L 155 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKITR-PPINVKIIEGLKAVLPCTTMGNPKP--SVSWIKGDSALRENS------RIAVLESGSL 155 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEEEE-CCCCEEEETTSCEEECCEEEEESCC--EEEEEETTEECCCCS------SEEECTTSCE
T ss_pred CCceeEeEEEEEEEeCCcccc-CCcceEEeCCCcEEEEEEEeccCCc--eEEEEeCCEEccCCC------cEEEecCCcE
Confidence 8774 4457788877666554 3456778899999999999998765 577999998876532 2223345689
Q ss_pred EEecCCCCCCEEEEEEEEecCCcE-EEEEEEEEcCCC
Q psy14886 244 EITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPP 279 (505)
Q Consensus 244 ~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l~v~~~p 279 (505)
.|..+..+|.|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 156 ~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 156 RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 999999999999999999999987 446788887654
|
| >2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=163.60 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=133.5
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
...| +|.++.+...+.+++.|+|.++. +..+.+|.|+|+..+...+...... . .....+.+. +|.|++
T Consensus 21 ~~~P-~P~~l~~~~~~~~sv~lsW~~p~--~~~i~~Y~v~~~~~~~~~~~~~~~~-~-------~~~~~~~i~-~L~p~t 88 (203)
T 2gee_A 21 MEVP-QPTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFEDFV-D-------SSVGYYTVT-GLEPGI 88 (203)
T ss_dssp SCCC-CCEEEEEECCTTTCEEEEEECCS--SSSCCEEEEEEEESSSSSCCEEEEE-E-------TTCCEEEEC-SCCTTC
T ss_pred ccCc-CCCccEEEecCCCEEEEEecCCC--CCCccEEEEEEEECCCCCCceeEEc-C-------CCccEEEeC-CCCCCC
Confidence 3456 77889998899999999999886 3568999999998765433221110 0 122344444 499999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC-CCc
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEF 434 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~~~ 434 (505)
.|.|+|.|.|..|.+.++ .+.+....| +|.++.+...+.+++.|.|++++ ++.+.+|.|+|+..+. ..+
T Consensus 89 ~Y~~~V~a~~~~g~s~~~----~~~t~~~~p--~P~~l~~~~~~~~sv~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~ 158 (203)
T 2gee_A 89 DYDISVYTVKNGGESTPT----TLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDV 158 (203)
T ss_dssp EEEEEEEEESSSCBCCCE----EEEEECCCC--CCEEEEEEEEETTEEEEEEECCS----SCCCSEEEEEEEETTCGGGC
T ss_pred EEEEEEEEEeCCCccccE----eeeecCCCc--CCCceEEEEcCCCEEEEEEcCCC----CCCccEEEEEEEECCCCCcc
Confidence 999999999998887644 233433433 79999998888999999999842 4589999999999653 334
Q ss_pred EEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceE
Q psy14886 435 QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~ 480 (505)
....... ..+.+.|.+|.|++.|.|+|.|+|..|.|+++...
T Consensus 159 ~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~~~ 200 (203)
T 2gee_A 159 AELSISP----SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200 (203)
T ss_dssp EEEEECT----TCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEE
T ss_pred EEEEcCC----CcCEEEECCCCCCCEEEEEEEEecCCCcCCCeeeE
Confidence 4333222 34678999999999999999999999999877544
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=166.87 Aligned_cols=156 Identities=19% Similarity=0.293 Sum_probs=119.6
Q ss_pred CCCCCceEEEEEEeccCCCe-EEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~-~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.+.|.+. +.|+|++..+... .++|.|.+++ .+|+|.|+|.+.|. .....+
T Consensus 19 v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-------------~~~L~i~~v~-~~D~G~Y~C~a~n~--~~s~~~ 82 (204)
T 3sgj_C 19 VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------------ASSYFIDAAT-VDDSGEYRCQTQLS--TLSDPV 82 (204)
T ss_dssp EETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-------------SSEEEESSCC-GGGCEEEEEEETTS--BCCCCE
T ss_pred EECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-------------ccEEEEeccc-ccCCEEEEEEeCCC--cccccE
Confidence 46899999999999877654 9999999988731 2799999999 99999999999873 344467
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
.|.|.. +|.+...+ ...+.+|++++|.|.+.+. |.+.+.|+++|..+.. ...++.|.|.++..+|+|.|+
T Consensus 83 ~l~V~~-~p~~~~~~---~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-----~~~~~~L~i~~v~~~D~G~Y~ 153 (204)
T 3sgj_C 83 QLEVHI-GWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-----FHHNSDFYIPKATLKDSGSYF 153 (204)
T ss_dssp EEEEEC-SSEEEECS---CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGGGCEEEE
T ss_pred EEEEec-CceEecCC---ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-----ccCCceEEECcCCcccCEEEE
Confidence 777774 44333332 2568899999999999655 5679999999987642 224678999999999999999
Q ss_pred EEEEcCC-CceeeeEEEEEEeCCe
Q psy14886 159 CTATNVH-GMDESKGRLIVLHGPS 181 (505)
Q Consensus 159 C~~~~~~-g~~~~~~~l~v~~~p~ 181 (505)
|.|.|.. +..+..+.|.|..+|.
T Consensus 154 C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 154 CRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp EEEEETTEEEECCCEEEEEEC---
T ss_pred EEEEeCCCceecCcEEEEEeCcCC
Confidence 9999954 4445557788866543
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=162.38 Aligned_cols=182 Identities=21% Similarity=0.347 Sum_probs=144.3
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+..+..++ +|.|.++..+|+|.|+|.+.+
T Consensus 7 ~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 84 (197)
T 3lcy_A 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84 (197)
T ss_dssp EEEEEECC--CCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred CCcccccC--CceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence 44444443 4567899999999999988888999999999999877777776665 699999999999999999999
Q ss_pred CCCceeeeEEEEEEeCCeeeee--CCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeec--
Q psy14886 164 VHGMDESKGRLIVLHGPSYYEQ--LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID-- 239 (505)
Q Consensus 164 ~~g~~~~~~~l~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-- 239 (505)
..+.....+.+.|...|..... ......+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ......
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~~~~~~-----~~~~~~~~ 157 (197)
T 3lcy_A 85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP--AMTWFHGQKLLQNSEN-----ITIENTEH 157 (197)
T ss_dssp SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC--EEEEEETTEECCCCSS-----EEEEECSS
T ss_pred CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC--eeEEeECCEECCCCCc-----eEEEEcCC
Confidence 9998888888888776665432 2244567889999999999998776 5679999988865321 111111
Q ss_pred CCeEEEecCCC-CCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 240 GGLLEITNASF-ADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 240 ~~~l~i~~~~~-~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
...|.|..+.. +|.|.|+|.|.|..|.....+.|.|.+
T Consensus 158 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 25788999884 899999999999999999998888864
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=182.34 Aligned_cols=252 Identities=13% Similarity=0.199 Sum_probs=157.4
Q ss_pred CCceEEEEEEecc-CCC-eEEEEECCEECcCCCCC--CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGV-PDV-TYSWFRNGELLNSETLP--LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~-p~~-~~~W~~~~~~l~~~~~~--~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|+.++|.|.+.+. |.+ .|+|++++......... ....+.+.. .+.|.|.... .+ .|.|+|.|.|..+......
T Consensus 150 ~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~-~s~L~i~~~~-~~-~g~ytC~v~n~~~~~~~~~ 226 (512)
T 1zvo_C 150 NSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMT-SSQLSTPLQQ-WR-QGEYKCVVQHTASKSKKEI 226 (512)
T ss_pred CCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEE-EEEEEEcHHH-cC-CceEEEEEEeCCCCceEEE
Confidence 5789999999885 654 89999976432110000 011223332 3568898888 76 9999999999887654433
Q ss_pred -----------EEEEEecCCC----------------------------------------------------ccCCCCC
Q psy14886 80 -----------QLRVLTLKPS----------------------------------------------------FKKRPLE 96 (505)
Q Consensus 80 -----------~l~v~~~~p~----------------------------------------------------~~~~~~~ 96 (505)
.+.+.. +|. +.+.+ +
T Consensus 227 ~~~~~~~~~~~~v~l~~-pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~-p 304 (512)
T 1zvo_C 227 FRWPESPKAQASSVPTA-QPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT-P 304 (512)
T ss_pred ecCCCCCCcCCEEEEeC-CCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEEC-C
Confidence 233331 221 11111 1
Q ss_pred ceEEeeCCCeEEEEeecCCC-C-CCeEEEEECCEEecCCC---cEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGG---RRKIFENG------NLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~---~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
....+.+|+.++|.|.+.|. | ...|.|+++|..+.... ......++ .|.|..+..+|.|.|+|.|.|..
T Consensus 305 ~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~ 384 (512)
T 1zvo_C 305 AVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS 384 (512)
T ss_pred ChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCC
Confidence 11224579999999999886 4 24999999998765211 11111222 48898888999999999999987
Q ss_pred CceeeeEEEEE-E-----eCCeeeeeCCCceEEEeeccEE-EEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeee
Q psy14886 166 GMDESKGRLIV-L-----HGPSYYEQLPPKITIAAHRNLQ-LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238 (505)
Q Consensus 166 g~~~~~~~l~v-~-----~~p~~~~~~~~~~~~~~g~~~~-l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 238 (505)
+... ...+.. . .+|.+....+.. .|+.+. |.|.+.+.+++.+.+.|.++|..+........ ......
T Consensus 385 ~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~-~~~~~~ 458 (512)
T 1zvo_C 385 LPPQ-RLMALREPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPA-RPPPQP 458 (512)
T ss_pred CCCC-ceeEEeecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCcccccc-ceeECC
Confidence 6543 222221 1 234433332222 688899 99999998777788999999998865321100 000011
Q ss_pred c------CCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 239 D------GGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 239 ~------~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
+ .+.|.+.....++.|.|+|.|.|....
T Consensus 459 dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~ 492 (512)
T 1zvo_C 459 GSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSR 492 (512)
T ss_pred CCCEEEEEEEEEECchhcCCCCeEEEEEEecCCC
Confidence 1 134566666667799999999997655
|
| >1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-21 Score=162.50 Aligned_cols=194 Identities=16% Similarity=0.164 Sum_probs=138.8
Q ss_pred CCCCCCCceEEEEE-eCCeEEEEeecCCCCCCCCceEEEEEEeCCCC------CeEEeeeccccceeeeecCceeeEEee
Q psy14886 277 GPPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNS------TWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 277 ~~p~~p~~~~~~~~-~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
.+|.+|.++.+... ..+.+.++|+++.+.+.+ ..|.|+|+..... .|..+.... ......+...
T Consensus 3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~~~~~-~~Y~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 73 (215)
T 1cd9_B 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKK--------RQNNCSIPRK 73 (215)
T ss_dssp CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCT--------TCCEEEEEGG
T ss_pred CCCCCCeeeeeecCCCcccEEEEecCCCCCCCc-eeEEEEEEecCCcccccccccccCCCCC--------CCcEEEECCc
Confidence 47888998988777 578999999998776554 5699999865421 122221100 0122333334
Q ss_pred eccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc------ccccEEEEEEeCCccccCCCCceEE
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG------KIGDLSISWEPLPREKQNAPNIYYK 423 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~------~~~~v~l~W~~~~~~~~~~~i~~Y~ 423 (505)
+|.+++.|.|+|.|.|..|.+. +... .+.+....++.||.++.+... ..+++.|+|++|. ..+..+++|.
T Consensus 74 ~L~~~~~Y~~~V~A~N~~G~~~-s~~~-~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~--~~~~~~l~Y~ 149 (215)
T 1cd9_B 74 NLLLYQYMAIWVQAENMLGSSE-SPKL-CLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWK--PSEYMEQECE 149 (215)
T ss_dssp GCCTTSCEEEEEEEEETTEEEE-CCCE-EECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCG--GGTTSCEEEE
T ss_pred ccccceEEEEEEEEECCCCCcc-CccE-EEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCC--CCCeEEEEEE
Confidence 5999999999999999999874 3222 445555567889999998765 6789999999843 3344458999
Q ss_pred EEEE-EcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCC---CCCceEEEeecc
Q psy14886 424 IFWR-KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG---PESEVVTIWHDP 486 (505)
Q Consensus 424 v~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g---~~s~~~~~~t~p 486 (505)
|+|+ ..+...|....... . ....+.|.+|.|++.|.|+|+|.|..|.| ++|+.+.+.|..
T Consensus 150 v~y~~~~~~~~w~~~~~~~-~--~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~e 213 (215)
T 1cd9_B 150 LRYQPQLKGANWTLVFHLP-S--SKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213 (215)
T ss_dssp EEEEESSTTCCCEEEEEEE-S--CEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCCC
T ss_pred EEEccCCCCCCcEEEeccc-C--cceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecCC
Confidence 9999 67777887643222 1 34678999999999999999999998775 567777777754
|
| >1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=157.83 Aligned_cols=181 Identities=10% Similarity=0.138 Sum_probs=130.8
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
..+|.+|.++.+.....+++.|+|.++. +.+.+|.|+|+.. ...+...... .....+.+.+ |.|++
T Consensus 4 ~t~p~~P~~l~~~~~~~~sv~l~W~~p~---~~i~~Y~v~~~~~-~~~~~~~~~~---------~~~~~~~i~~-L~p~t 69 (186)
T 1qr4_A 4 GTDLDNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSP-SGKKNEMEIP---------VDSTSFILRG-LDAGT 69 (186)
T ss_dssp ----CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECT-TCCEEEEEEC---------TTCSEEEEES-CCSSC
T ss_pred cCCCcCCCceEEEecCCCEEEEEEeCCC---CCccEEEEEEEeC-CCCeeEEECC---------CCCCEEEECC-CCCCC
Confidence 4568899999999999999999999873 3688999999854 3333332211 1223445554 99999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcE
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ 435 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~ 435 (505)
.|.|+|.|.|..|.+.+... .+.+ ++.+|.++.+...+.+++.|.|+++ .+.+.+|.|+|+..+...+.
T Consensus 70 ~Y~~~V~a~~~~~~s~~~~~--~~~t----~p~~P~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~~~~~ 138 (186)
T 1qr4_A 70 EYTISLVAEKGRHKSKPTTI--KGST----VVGSPKGISFSDITENSATVSWTPP-----RSRVDSYRVSYVPITGGTPN 138 (186)
T ss_dssp EEEEEEEEESSSCBCCCEEE--EEEC----CCCCCSCEEEESCCSSCEEEEECCC-----SSCCSEEEEEEEETTCCCCE
T ss_pred EEEEEEEEEcCCccCCCEEE--EEEC----CCCCCCccEEEEeCCCEEEEEEECC-----CCcccEEEEEEEeCCCCCce
Confidence 99999999998766653221 2333 3567889999888899999999983 25699999999998765555
Q ss_pred EEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 436 SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
...+.. ....+.|.+|.|++.|.|+|.|.|..|.|++.. ..+.|.|
T Consensus 139 ~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~T~p 184 (186)
T 1qr4_A 139 VVTVDG----SKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILKTAL 184 (186)
T ss_dssp EEEEET----TCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEEC--
T ss_pred EEEcCC----CcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEEecC
Confidence 444433 336788999999999999999999999988643 3445544
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=164.98 Aligned_cols=189 Identities=24% Similarity=0.412 Sum_probs=136.0
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee----CCCEEEcCC-CCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPV-SRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~----~~~l~i~~v-~~~d~G~y~C~~ 161 (505)
+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......... ...|.|.++ ..+|+|.|+|.+
T Consensus 6 ~P~~~~~p--~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 6 PPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCeEEeCc--ceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 45555544 34678899999999999998999999999999887544333221 235999999 499999999999
Q ss_pred EcCCCceeeeEEEEEEeCC------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCe
Q psy14886 162 TNVHGMDESKGRLIVLHGP------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 235 (505)
.|..|.....+.|.|...+ +.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+............
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p--~v~W~~~g~~l~~~~~~~~~~~~ 161 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP--EITWFKDFLPVDTSNNNGRIKQL 161 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC--EEEEEETTEEC------CCEEEE
T ss_pred EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC--eEEEEECCccccCcCCCceEEEE
Confidence 9999988888888887642 223333455677889999999999988765 57799999888653110000000
Q ss_pred eeecCCeEEEecCCCCCCEEEEEEEEecCCcEE-EEEEEEEcCCC
Q psy14886 236 INIDGGLLEITNASFADAGEYECVVKSTVGKIS-TKTTVIVEGPP 279 (505)
Q Consensus 236 ~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~v~~~p 279 (505)
.......|.|..+..+|.|.|+|.|.|..|... ..+.|.+...+
T Consensus 162 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206 (212)
T ss_dssp EETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred ecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence 111236899999999999999999999999864 44666666544
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=161.53 Aligned_cols=181 Identities=25% Similarity=0.384 Sum_probs=138.4
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEE-eeCC--CEEEcCCCCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKI-FENG--NLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~-~~~~--~l~i~~v~~~d~G~y~C~~ 161 (505)
+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|+++|..+.... +... ..++ .|.|.+++..|+|.|+|.+
T Consensus 5 ~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (194)
T 2a38_A 5 APTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA 82 (194)
T ss_dssp EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEccC--CceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence 34444443 44678999999999999998889999999998876542 2222 2233 6999999999999999999
Q ss_pred EcCCCceeeeEEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeec
Q psy14886 162 TNVHGMDESKGRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 239 (505)
.+..|.....+.+.|.. .|+.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ......
T Consensus 83 ~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~~~~~~-----~~~~~~ 155 (194)
T 2a38_A 83 TNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP--VVKFYRDGAEIQSSLD-----FQISQE 155 (194)
T ss_dssp EETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC--EEEEEETTEECCCSSS-----EEEEEE
T ss_pred EcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC--eEEEEECCEECCCCCc-----EEEEEc
Confidence 99988888778888874 23333344556778899999999999988766 4679999988865321 112222
Q ss_pred C--CeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 240 G--GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 240 ~--~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
+ ..|.|..+..+|.|.|+|.|.|..|.....+.|.|+
T Consensus 156 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 2 278999999999999999999999998888888763
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-21 Score=161.08 Aligned_cols=168 Identities=20% Similarity=0.323 Sum_probs=127.8
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCC-----CEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~-----~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
....+.+|+.+.|.|.+.+ .|.+.+.|++||..+..+.++.+..+. +|.|.++..+|+|.|+|.|.| |....
T Consensus 10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~ 87 (207)
T 3rbs_A 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATN 87 (207)
T ss_dssp EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEE
T ss_pred CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEE
Confidence 3567899999999999865 689999999999999877666655433 499999999999999999999 54444
Q ss_pred eEEEEEE---------------------eCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCEEecCCCC
Q psy14886 171 KGRLIVL---------------------HGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDL 228 (505)
Q Consensus 171 ~~~l~v~---------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~~~~~~~~ 228 (505)
...+.+. .+|.+.... ...+..|+.+.|.|.+.+. |.| .+.|++++..+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~v~~g~~v~l~C~v~g~~P~p--~i~W~k~g~~l~~~~~ 163 (207)
T 3rbs_A 88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKVANIKKET--HIVWYKDEREISVDEK 163 (207)
T ss_dssp EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE--EEEEETTTEEEEEEEEESCCTTC--EEEEEETTEEECCCCC
T ss_pred EEEEEEEccchhhhcccccccccccccCCCCceEecC--CcEEcCCCcEEEEEEEeCCCCCC--EEEEEECCEECCCCCc
Confidence 4443321 134433322 3667889999999999987 655 5679999999865321
Q ss_pred CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 229 NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 229 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
. ........|.|.++..+|.|.|+|.|.|..|.....+.|+.
T Consensus 164 ~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 164 H-----DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp C-----CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred e-----EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 1 11112246999999999999999999999999988888764
|
| >1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-19 Score=177.12 Aligned_cols=332 Identities=11% Similarity=0.100 Sum_probs=191.6
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCce-e--eeEEEEEEeCCeeeeeCCCceEEE----eec---cEEEEEEeee---cC
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMD-E--SKGRLIVLHGPSYYEQLPPKITIA----AHR---NLQLRCSAHT---EE 208 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~-~--~~~~l~v~~~p~~~~~~~~~~~~~----~g~---~~~l~C~~~~---~~ 208 (505)
..+.|.++.......|++.|.|..|.. . ....+.....+... ..+..+.+. ... .+.|.|.... .+
T Consensus 223 ~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp-~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g~ 301 (680)
T 1zlg_A 223 ERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP-PAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIP 301 (680)
T ss_pred CeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCC-CCCCceEeeeeeecCCCceEEEEEecCCCCCCCc
Confidence 357788888878788888888887722 1 12222221111111 122233322 234 6788887432 11
Q ss_pred CCCeEEEEEeC--CEE-ecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEE---EEEEEE---cCCC
Q psy14886 209 LLDVAYIWTHN--GVR-IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST---KTTVIV---EGPP 279 (505)
Q Consensus 209 ~~~~~~~w~~~--~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~---~~~l~v---~~~p 279 (505)
...+.+.|... +.. .....+ ...........+.+..+.....+.|+..|.|..|.... ...+.+ ..+|
T Consensus 302 i~~Y~V~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P 378 (680)
T 1zlg_A 302 VHHYKVFWSWMVSSKSLVPTKKK---RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATN 378 (680)
T ss_pred eeEEEEEEEecccccccCCccce---EEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCC
Confidence 22344555521 110 000000 00011112256788888888889999999998876432 122333 2344
Q ss_pred CCCCceEEEEEeCCeEEE-----------EeecCCCCCCCCceEEEEEEeCCCCC-------eEEeeeccc----cceee
Q psy14886 280 GLPGGVQVVEVHKTSATI-----------QWTDGATNGRPITHYKIIARTNWNST-------WFNVSEHVI----GKEVD 337 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l-----------~w~~~~~~~~~i~~y~v~~~~~~~~~-------w~~~~~~~~----~~~~~ 337 (505)
. |.++.+.....+++.| +|.+|... ..+..|.|.|....... |........ .....
T Consensus 379 ~-p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~-~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~ 456 (680)
T 1zlg_A 379 N-KEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQ-DGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASS 456 (680)
T ss_pred C-ccccccccccCccccccccccCCCccccccCCccc-CCcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeee
Confidence 4 5667777777778776 99988643 34668999887654321 211100000 00000
Q ss_pred eecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccC-----------------CCCCC-----CCCCce---
Q psy14886 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-----------------PADKP-----YQAPSR--- 392 (505)
Q Consensus 338 ~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t-----------------~~~~p-----~~~P~~--- 392 (505)
.......+.+. +|.+++.|.|+|.|.|..|.+..... .+.+ ....| +++|.+
T Consensus 457 ~~~~~~~~~l~-~L~p~t~Y~~~V~A~n~~G~s~~~~~--~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~ 533 (680)
T 1zlg_A 457 GMTHENYIILQ-DLSFSCKYKVTVQPIRPKSHSKAEAV--FFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSA 533 (680)
T ss_pred eeccCceEEec-CCCCCCeEEEEEEEecCCCCCCcccc--ceeCCCccccccCCccccccCCCCccccccccCCccccce
Confidence 11122344444 59999999999999999996542111 0111 01112 267888
Q ss_pred -eeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC----cEEEEeee--cCceeeEEEEcCCccceeeEEEEE
Q psy14886 393 -IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE----FQSETLKE--YGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 393 -~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~----~~~~~~~~--~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+.+...+.+ |.|+|++| ..+.+|.|++|+|+|+..+... +....+.. ......+.+.|.+|.|++.|.|+|
T Consensus 534 ~v~v~~~~~t-i~lsW~pP-~~~~ng~I~gY~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V 611 (680)
T 1zlg_A 534 SFIVQDVNIT-GHFSWKMA-KANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEV 611 (680)
T ss_pred eEEEeccCce-EEEEecCC-CCCCCCCceeEEEEEEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEE
Confidence 666656566 99999984 3355899999999999764322 11111110 011235788999999999999999
Q ss_pred EEecCCCCCCCCceEEEeec
Q psy14886 466 QAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t~ 485 (505)
+|+|.+|.|++ ....+.|.
T Consensus 612 ~A~n~~G~G~~-~~~~~~T~ 630 (680)
T 1zlg_A 612 QVLTPGGEGPA-TIKTFRTP 630 (680)
T ss_pred EEEcCCCcCCC-cceEEECC
Confidence 99999999998 77777775
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=170.68 Aligned_cols=172 Identities=20% Similarity=0.370 Sum_probs=129.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcC-----CCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc-
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNS-----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT- 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~- 74 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+.. .........++.....+|.|.+++ .+|+|.|+|.+.+..+.
T Consensus 16 v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~-~~d~G~Y~C~~~~~~g~~ 94 (209)
T 1nbq_A 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT-REDTGTYTCMVSEEGGNS 94 (209)
T ss_dssp EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCC-TTSCSEEEEEEEETTSSC
T ss_pred EEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCC-HHHCcEEEEEEecCCCCc
Confidence 35899999999999989999999998754210 000112346777777999999999 99999999999987653
Q ss_pred -eEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCc---------EEEe-eCC
Q psy14886 75 -RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGR---------RKIF-ENG 142 (505)
Q Consensus 75 -~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~---------~~~~-~~~ 142 (505)
....+.|.|.. +|.+..... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... +... ..+
T Consensus 95 ~~~~~~~l~V~~-~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (209)
T 1nbq_A 95 YGEVKVKLIVLV-PPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTG 171 (209)
T ss_dssp EECCEEECCEEB-CCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTC
T ss_pred cceEEEEEEEec-CCcCCCccc--ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcc
Confidence 33456677774 565544442 2458899999999997 8889999999999988765322 1111 345
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCcee--eeEEEEE
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIV 176 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~--~~~~l~v 176 (505)
.|.|.++..+|.|.|+|.|.|..|... ..+.|.|
T Consensus 172 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 172 ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred eEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 799999999999999999999999883 3355554
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=177.74 Aligned_cols=168 Identities=19% Similarity=0.274 Sum_probs=133.2
Q ss_pred CCCCceEEEEEE------eccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE-cccCc
Q psy14886 2 DNQADLTWTCEA------FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK-NQLKT 74 (505)
Q Consensus 2 ~~G~~~~l~C~~------~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~-~~~~~ 74 (505)
.+|++++|.|.+ .+.|.+.++|+|++.++.. ...++...++.|.|.+++ .+|+|.|+|.+. |..|.
T Consensus 116 ~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~------~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~~n~~g~ 188 (315)
T 1itb_B 116 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL------DNIHFSGVKDRLIVMNVA-EKHRGNYTCHASYTYLGK 188 (315)
T ss_dssp ETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC------CSSSEEEETTEEEESSCC-GGGCEEEEEEEEEEETTE
T ss_pred ecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC------ccceEeecCceEEEEece-ehhCcEEEEEEEcCCCCc
Confidence 479999999998 7888999999999999864 344667778899999999 999999999999 67776
Q ss_pred eEe---eEEEEEE----ecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE-----e---
Q psy14886 75 RYS---SAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----F--- 139 (505)
Q Consensus 75 ~~~---~~~l~v~----~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~-----~--- 139 (505)
... .+.+.+. ..+|.+...+ .....+.+|+.+.|.|.+.|.|.+.+.|+++|..+........ .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~ 267 (315)
T 1itb_B 189 QYPITRVIEFITLEENKPTRPVIVSPA-NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 267 (315)
T ss_dssp EEEEEEEEEEEEECCCCCCCCEECSCC-SEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCS
T ss_pred EEEEEEEEEEEEecCCCCCCCEEecCC-CCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeecc
Confidence 532 3334344 1355554433 2335789999999999999999999999999999876442111 1
Q ss_pred -------eCCCEEEcCCCCCC-CEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 140 -------ENGNLLISPVSRDD-SGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 140 -------~~~~l~i~~v~~~d-~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
....|.|.++..+| +|.|+|.|.|..|.....+.|.|.
T Consensus 268 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp SCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 12269999999999 999999999999999988888763
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=158.94 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=117.2
Q ss_pred CCCCCceEEEEEEeccCCCe-EEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~-~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.+.|.+. +.|+|++..+.. .+++|.|.+++ .+|+|.|+|.+.|..+ ...+
T Consensus 19 v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-------------~~~~L~i~~~~-~~d~G~Y~C~~~n~~~--s~~~ 82 (175)
T 1fnl_A 19 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------------QASSYFIDAAT-VNDSGEYRCQTNLSTL--SDPV 82 (175)
T ss_dssp EETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------------SCSEEEESSCC-GGGCEEEEEECSSSCC--CCCE
T ss_pred eeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-------------CceEEEEeCCC-cccCEEEEEEeeCCcc--cccE
Confidence 46899999999998877655 899999988762 25689999999 9999999999987443 3456
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
.|.|.. ++.. ... ....+.+|+.+.|.|.+.+.++ +.+.|+++|..+.. ......|.|.++..+|+|.|+
T Consensus 83 ~l~V~~-~~~~-~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-----~~~~~~L~i~~v~~~d~G~Y~ 153 (175)
T 1fnl_A 83 QLEVHI-GWLL-LQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNSDFHIPKATLKDSGSYF 153 (175)
T ss_dssp EEEEEC-SSEE-EEC--SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGGGCEEEE
T ss_pred EEEEeC-CCce-eeC--CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-----CCCCCEEEEcccChhhCeEEE
Confidence 777763 2322 222 2245889999999999988765 49999999988742 234678999999999999999
Q ss_pred EEEEcCCCce-eeeEEEEEE
Q psy14886 159 CTATNVHGMD-ESKGRLIVL 177 (505)
Q Consensus 159 C~~~~~~g~~-~~~~~l~v~ 177 (505)
|.|.|..+.. +..+.|.|.
T Consensus 154 C~a~n~~~~~~s~~~~l~V~ 173 (175)
T 1fnl_A 154 CRGLVGSKNVSSETVNITIT 173 (175)
T ss_dssp EEEEETTEEEECCCEEEEEE
T ss_pred EEEEcCCCCccCccEEEEEe
Confidence 9999976543 334666664
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=177.13 Aligned_cols=167 Identities=15% Similarity=0.222 Sum_probs=130.8
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc--cCceEe
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ--LKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~--~~~~~~ 77 (505)
+.+|+.+.|.|.+.+.| .+.+.|+|++..+.. ...++...+++|.|.+++ .+|+|.|+|.|.|. .+....
T Consensus 140 ~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~~~g~~~~ 212 (329)
T 3oq3_B 140 THDKYGIDLYCGILYAKHYNNITWYKNNQELII------DGTKYSQSGQNLIIHNPE-LEDSGRYDCYVHYDDVRIKNDI 212 (329)
T ss_dssp SSTTTCEEEECCCCSCCCCCEEEEEETTEECCC------SSSSEEEETTEEEECSCC-GGGCEEEEEEEEECCTTSSSCE
T ss_pred EeCCCcEEEEeccCCCCCCceEEEEECCccCCC------CCceEecCCCEEEEeecC-hhhCEEEEEEEEecccCCCcee
Confidence 35799999999999999 899999999998853 345676678999999999 99999999999986 544333
Q ss_pred ----eEEEEEEecCCC--ccCCCCCceEEeeCCCeEEEEeecCCCC---CC-eEEEEECCEEe-cCCCcEEEe-------
Q psy14886 78 ----SAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAP---KP-KFVWKKDGNII-GSGGRRKIF------- 139 (505)
Q Consensus 78 ----~~~l~v~~~~p~--~~~~~~~~~~~v~~g~~v~l~C~~~~~p---~~-~i~W~~~g~~~-~~~~~~~~~------- 139 (505)
.+.|.|...+.. .... +....+.+|+.+.|.|.+.+.| .+ .+.|+++|..+ ..+.+....
T Consensus 213 ~~s~~~~l~V~~~~~~~~~~~~--~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~ 290 (329)
T 3oq3_B 213 VVSRCKILTVIPSQDHRFKLIL--DPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI 290 (329)
T ss_dssp EEEEEEEEEEECCCCCCEEEEC--CSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTE
T ss_pred EEEeeEEEEEECCCCCCCceec--CCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCce
Confidence 366777753311 1112 3457789999999999999987 67 89999999874 333322221
Q ss_pred eCCCEEEcCCCCCCCE-EEEEEEEcCCCceeeeEEEEE
Q psy14886 140 ENGNLLISPVSRDDSG-IYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G-~y~C~~~~~~g~~~~~~~l~v 176 (505)
..+.|.|.++..+|.| .|+|.|.|..|.....+.|.|
T Consensus 291 ~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 291 TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred eEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 2456999999999999 999999999999888877765
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=158.36 Aligned_cols=170 Identities=21% Similarity=0.271 Sum_probs=132.7
Q ss_pred EEeeC-CCeEEEEeecCCCCC--CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 99 TYAGE-GGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 99 ~~v~~-g~~v~l~C~~~~~p~--~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
..+.+ |+++.|.|.+.+.|. +.+.|+++|..+....... .+..|.|.++..+|+|.|+|.+.|. +.....+.|.
T Consensus 12 ~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~ 88 (190)
T 2wv3_A 12 VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIE 88 (190)
T ss_dssp EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC--SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEE
T ss_pred EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe--ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEE
Confidence 45666 999999999988876 7999999999887543322 3467999999999999999999999 8888888999
Q ss_pred EEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe--CCEEecCCCCCcccCCeeeec--CCeEEEecCC-C
Q psy14886 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH--NGVRIGNMDLNELETPNINID--GGLLEITNAS-F 250 (505)
Q Consensus 176 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~-~ 250 (505)
|..+|.+... +....+..|+.+.|.|.+.+.|.+ .+.|++ ++..+..... ......... ...|.|..+. .
T Consensus 89 V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~g~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~ 163 (190)
T 2wv3_A 89 VKAAPDITGH-KRSENKNEGQDAMMYCKSVGYPHP--EWMWRKKENGVFEEISNS--SGRFFIINKENYTELNIVNLQIT 163 (190)
T ss_dssp EECCCEEEEE-CSEEEEETTSCEEEEEEEECSSCC--EEEEEEEETTEEEECCCT--TSCEEEEECSSEEEEEECSCCTT
T ss_pred EecCCccccc-CCcceeeCCCcEEEEEEeCccCCC--ceEEEEcCCCceeeeecC--CCeEEEecCCCeeEEEEEecccc
Confidence 9887776544 456678899999999999888766 567988 7777642110 001111111 1379999999 6
Q ss_pred CCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 251 ADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 251 ~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
+|.|.|+|.|.|..|.....+.|.|.
T Consensus 164 ~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 164 EDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp TSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEecCCcceeEEEEEEE
Confidence 99999999999999999888888774
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=167.77 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=120.2
Q ss_pred CCCC--CceEEEEEEeccCCCeEEEEEC---CEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQ--ADLTWTCEAFGVPDVTYSWFRN---GELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G--~~~~l~C~~~~~p~~~~~W~~~---~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+| ++++|.|.+.+ |.+.++|+++ +..+.. ..++.. ....|.|.+++ .+|+|.|+|.|.|..+.
T Consensus 19 v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~-------~~~~~~~~~~~l~I~~v~-~~D~G~Y~C~a~n~~~~ 89 (213)
T 2x1w_L 19 ITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPD-------GNRISWDSKKGFTIPSYM-ISYAGMVFCEAKINDES 89 (213)
T ss_dssp ECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCC-------SSSCEEETTTEEEEEGGG-TTTCSEEEEEEC----C
T ss_pred EecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccC-------CCcccccCCccEEEccCC-hhcCceEEEEEEECCee
Confidence 4689 99999999976 7789999884 666652 233333 45789999999 99999999999885444
Q ss_pred eEee-EEEEEEec-CCCccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEECCEEecCCCc-E-E---------Ee
Q psy14886 75 RYSS-AQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKDGNIIGSGGR-R-K---------IF 139 (505)
Q Consensus 75 ~~~~-~~l~v~~~-~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g~~~~~~~~-~-~---------~~ 139 (505)
..+. +.|.|... +|.+...+ ...+.+.+|++++|.|.+.+.| .+.+.|+++|..+..... . . ..
T Consensus 90 ~~s~~~~l~v~~~~~p~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (213)
T 2x1w_L 90 YQSIMYIVVVVGYRIYDVVLSP-SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 168 (213)
T ss_dssp EECCCEEEEECBCCEEEEEEES-CSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEE
T ss_pred EEEEEEEEEEeCCcccceEEcC-CCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcccee
Confidence 4333 56666431 22233333 2334789999999999998754 458999998875432111 0 0 11
Q ss_pred eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
...+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 169 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210 (213)
T ss_dssp EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence 123599999999999999999999999998889999977654
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=161.51 Aligned_cols=181 Identities=22% Similarity=0.241 Sum_probs=140.1
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEee--CC--CEEEcCCCCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE--NG--NLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~--~~--~l~i~~v~~~d~G~y~C~~ 161 (505)
+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+... .++.+.. ++ .|.|.++..+|+|.|+|.+
T Consensus 4 ~P~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (197)
T 2j8h_A 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81 (197)
T ss_dssp CCEEEECC--CCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred CCEEEEcC--CccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence 55555544 4567899999999999999999999999999988653 3343322 33 7999999999999999999
Q ss_pred EcCCCceeeeEEEEEEeCCeeeeeC----CCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee
Q psy14886 162 TNVHGMDESKGRLIVLHGPSYYEQL----PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~~p~~~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 237 (505)
.|..|.....+.|.|..+|...... +....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ....
T Consensus 82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~-----~~~~ 154 (197)
T 2j8h_A 82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP--VITWQKGQDLIDNNGH-----YQVI 154 (197)
T ss_dssp EETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCC--EEEEEESSCEECSSSS-----CEEE
T ss_pred EECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCC--cEEEEECCEEeecCCC-----EEEE
Confidence 9998888888888887765543211 133567789999999999998765 6679999988764321 1111
Q ss_pred --ecCCeEEEec-CCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 238 --IDGGLLEITN-ASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 238 --~~~~~l~i~~-~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
.....|.|.. +..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 155 ~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp ECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 1235788888 99999999999999999998888888875
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=168.88 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=120.5
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECC-EECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~-~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
++|++++|.|.+.|.|.+.|.|+++. .++. ++... ..++|.|.+++ .+|+|.|+|.|.|..+.....
T Consensus 14 ~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~---------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~~~~~~~ 83 (202)
T 1vca_A 14 QIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---------GKVTNEGTTSTLTMNPVS-FGNEHSYLCTATCESRKLEKG 83 (202)
T ss_dssp ETTSCEEEEEEEESCSSCEEEEEETTCCCCS---------SEEEEETTEEEEEESSCC-GGGCSEEEEEEEETTEEEEEE
T ss_pred cCCCcEEEEEeecCCCCCeEEEECCCCCCcc---------ceEEEcCCccEEEECcCC-HHHCEEEEEEEEECCceEeeE
Confidence 48999999999999999999999842 2221 22222 23479999999 999999999999988777777
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC--CeEEEEECCEEecCCCcEE-------EeeCCCEEEcC
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK--PKFVWKKDGNIIGSGGRRK-------IFENGNLLISP 148 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~i~W~~~g~~~~~~~~~~-------~~~~~~l~i~~ 148 (505)
+.|.|...|..+.+.+ . ..+.+|+.++|.|.+.+. |. +++.|++++..+....... ......|.|..
T Consensus 84 ~~l~V~~~p~~~~~~~--~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~ 160 (202)
T 1vca_A 84 IQVEIYSFPKDPEIHL--S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP 160 (202)
T ss_dssp EEEEEEBCCSCCEEEE--S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECC
T ss_pred EEEEEEeCCCCCEeCC--c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEe
Confidence 8888886433333332 1 447899999999999875 33 3799999998774321000 11122467888
Q ss_pred CCCCCCEEEEEEEEcCCCce-------eeeEEEEEEeCCe
Q psy14886 149 VSRDDSGIYSCTATNVHGMD-------ESKGRLIVLHGPS 181 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~-------~~~~~l~v~~~p~ 181 (505)
+..+|+|.|+|.|.|..+.. .....|.|.++|.
T Consensus 161 ~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 161 VIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp CGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred eeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 88889999999999987752 3456777776654
|
| >2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=162.20 Aligned_cols=182 Identities=17% Similarity=0.157 Sum_probs=129.0
Q ss_pred CCCceEEEEEe--CCeEEEEeecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 281 LPGGVQVVEVH--KTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 281 ~p~~~~~~~~~--~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+|.++.+..+. .+++.|+|.+| .+.++.+|.|+|+.... ..|....... ....+.+.+ |.|++.|
T Consensus 2 ~P~~l~v~~v~~~~~si~l~W~~p--~~~~i~~Y~v~~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y 69 (201)
T 2ha1_A 2 GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPG---------HLNSYTIKG-LKPGVVY 69 (201)
T ss_dssp CCCEEECCSCSCCSSCEEEEEECC--SSTTCCEEEEEEEETTCSSCCEEEEECT---------TCCEEEECS-CCTTEEE
T ss_pred CceeEEEEecCCCCCEEEEEEeCC--CCCCceEEEEEEEECCCCCceEEEecCC---------CccEEEecC-CCCCCEE
Confidence 46677777766 89999999988 46789999999997654 5566543221 123445555 9999999
Q ss_pred EEEEEEEcCCCcCCCCC---------CCCCccCCCCCCCCCC----ceeeeeccccccEEEEEEeCCccccCCCCceEEE
Q psy14886 358 EFKVIAGNELGYGEPSS---------PSPQYNTPADKPYQAP----SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 424 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~---------~~~~~~t~~~~p~~~P----~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v 424 (505)
.|+|.|.|..|.+.++. ......+....|..+| .++.+...+.+++.|.|+++ .+.+.+|+|
T Consensus 70 ~~~V~a~n~~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v 144 (201)
T 2ha1_A 70 EGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA-----SDTVSGFRV 144 (201)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS-----CTTEEEEEE
T ss_pred EEEEEEEecccccCceeEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC-----CCCccEEEE
Confidence 99999999999886421 1001112222233333 56788778889999999983 357999999
Q ss_pred EEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
+|+..+...|...... .. ....+.|.+|.|++.|.|+|.|+|.+|.|++......
T Consensus 145 ~~~~~~~~~~~~~~~v-~~--~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s~~~~ 199 (201)
T 2ha1_A 145 EYELSEEGDEPQYLDL-PS--TATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 199 (201)
T ss_dssp EEEETTTCCCCEEEEE-ET--TCCEEEECSCCTTCEEEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEECCCCCceeEEEc-CC--ceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEeeEee
Confidence 9998754444322222 12 3467899999999999999999999999987655543
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=164.57 Aligned_cols=190 Identities=27% Similarity=0.488 Sum_probs=139.5
Q ss_pred EEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC-----cEEEeeCCCEEE-----cCCCC
Q psy14886 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLI-----SPVSR 151 (505)
Q Consensus 82 ~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~-----~~~~~~~~~l~i-----~~v~~ 151 (505)
.+...+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+.... ......++.+.+ .++..
T Consensus 4 ~~~~~pp~i~~~p--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 81 (212)
T 2v9r_A 4 RQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR 81 (212)
T ss_dssp --CCEEEEEEECC--CCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCC
T ss_pred CcccCCcceecCC--CceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCc
Confidence 3344456665554 45678999999999999888889999999999876432 233334444444 45689
Q ss_pred CCCEEEEEEEEcCCCce-eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEe-eecCCCCeEEEEEeCCEEecCCCCC
Q psy14886 152 DDSGIYSCTATNVHGMD-ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLN 229 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~w~~~~~~~~~~~~~ 229 (505)
.|+|.|+|.+.|..|.. ...+.|.|...++.....+....+..|+.+.|.|.+ .+.|.+ .+.|++++..+....
T Consensus 82 ~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~~l~~~~-- 157 (212)
T 2v9r_A 82 PDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP--TISWKKDGSPLDDKD-- 157 (212)
T ss_dssp CSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC--EEEEEETTEEECTTS--
T ss_pred ccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC--EEEEEECCccCCCCc--
Confidence 99999999999988765 345777776655444444556778899999999998 777765 677999999886532
Q ss_pred cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEE-EEEEEEcCCCCC
Q psy14886 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST-KTTVIVEGPPGL 281 (505)
Q Consensus 230 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~-~~~l~v~~~p~~ 281 (505)
......++.|.|..+..+|.|.|+|.|.|..|.... .+.|.|..+|..
T Consensus 158 ----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~ 206 (212)
T 2v9r_A 158 ----ERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206 (212)
T ss_dssp ----TTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred ----ceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence 233345678999999999999999999999998655 488888877754
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=166.71 Aligned_cols=168 Identities=24% Similarity=0.400 Sum_probs=128.3
Q ss_pred CCCCCceEEEEE-EeccCC-CeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCE-AFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~-~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.++|.|. +.+.|. +.+.|+|++..+... ...+... .+++|.|.+++ .+|+|.|+|.+.+..+...
T Consensus 20 v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~~~~~~~~~~ 93 (201)
T 3s97_C 20 VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFIT-----MDKRRFVSQTNGNLYIANVE-ASDKGNYSCFVSSPSITKS 93 (201)
T ss_dssp EETTCCEEECCCCCSEESSCCEEEEEESSTTCBCC-----CSSSEEECTTTCCEEESSCC-GGGCEEEEEEEEEGGGTEE
T ss_pred EECCCCEEEeccccccCCCceEEEEEECCceeeee-----eCCCeEEEcCCCeEEECcCC-cccCeEEEEEEEecCCCcc
Confidence 468999999999 788888 999999998876421 1222222 46789999999 9999999999998665544
Q ss_pred e---eEEEEEEe------cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEc
Q psy14886 77 S---SAQLRVLT------LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147 (505)
Q Consensus 77 ~---~~~l~v~~------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~ 147 (505)
. ...+.+.. .+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .....++.|.|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~-~~~~~~~~L~i~ 170 (201)
T 3s97_C 94 VFSKFIPLIPIPERTTKPYPADIVVQF--KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA-EISTSGAVLKIF 170 (201)
T ss_dssp EECCCEEEEEECCSSCCCEEEEEEEEC--CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC-EEETTTTEEEEC
T ss_pred hhhcccceeeccccccCCCCCceEecC--CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce-eecCCCCEEEEc
Confidence 3 23333331 123333332 25678899999999999999999999999998776442 233345679999
Q ss_pred CCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus 171 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 171 NIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 999999999999999999998888888774
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=160.58 Aligned_cols=160 Identities=21% Similarity=0.362 Sum_probs=121.8
Q ss_pred CCCCCceEEEEEEeccCCC--eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDV--TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~--~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|++++|.|.+.+.|.+ .+.|+|++..+..... . .....|.|. + .+|+|.|+|.+.|. ....
T Consensus 10 v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~-------~-~~~~~l~i~--~-~~d~G~Y~C~~~n~---~~~~ 75 (184)
T 3b5h_A 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-------P-GQKTEFKVD--S-DDQWGEYSCVFLPE---PMGT 75 (184)
T ss_dssp EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-------C-CSEEEEEEC--G-GGCCEEEEEEEEST---TSCE
T ss_pred EecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc-------c-CCcEEEEEe--c-hhhCeEEEEEEECC---cCcE
Confidence 4689999999999886655 9999999998874321 0 012345554 6 88999999999972 2356
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-CCeEEEEE---CCE-EecC--CCcEEEeeCC---CEEEcC
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKK---DGN-IIGS--GGRRKIFENG---NLLISP 148 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~---~g~-~~~~--~~~~~~~~~~---~l~i~~ 148 (505)
+.|.|.. +|.+...+ ....+.+|+.+.|.|.+.+.| .+.+.|++ ++. .+.. ..++.+..++ .|.|.+
T Consensus 76 ~~l~V~~-~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 152 (184)
T 3b5h_A 76 ANIQLHG-PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIEN 152 (184)
T ss_dssp EEEEECC-SCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECS
T ss_pred EEEEEec-CCceeecC--CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEee
Confidence 6777774 67666554 445789999999999999998 78999999 444 3432 2455554444 699999
Q ss_pred CC-CCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 149 VS-RDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 149 v~-~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+. ..|.|.|+|.|.|..|.....+.|.|.
T Consensus 153 v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 153 LNMEADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp CCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence 99 899999999999999998888888774
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-22 Score=169.51 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=127.9
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEE----------------CCEECcCCCCCCCCCCcEEEE-------CCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFR----------------NGELLNSETLPLEDQDRYFIQ-------DNVLTIR 53 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~----------------~~~~l~~~~~~~~~~~~~~~~-------~~~L~i~ 53 (505)
+.+|++++|.|.+.+.+ .+.+.|+| ++..+... .....+|+... +.+|.|.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~L~i~ 89 (214)
T 3jz7_A 12 KAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY--YPDLKGRVHFTSNDVKSGDASINVT 89 (214)
T ss_dssp EETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCC--CGGGTTTEEESCSCGGGTBCCEEEC
T ss_pred EecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEcccc--CCccccceEEeccCccCCcccEEEc
Confidence 35899999999998766 46999998 44433210 00124566553 4689999
Q ss_pred cCCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECC--EEe
Q psy14886 54 YLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDG--NII 130 (505)
Q Consensus 54 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g--~~~ 130 (505)
+++ .+|+|.|+|.+.+..+.....+.|.|.. +|.+...+ ....+.+|+.+.|.|.+ .+.|.+.+.|++++ ..+
T Consensus 90 ~v~-~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-~p~~~~~~--~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~ 165 (214)
T 3jz7_A 90 NLQ-LSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCF--VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165 (214)
T ss_dssp SCC-GGGCEEEEEEEEETTEEEEEEEEEEEEC-CCBSCEEE--EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred cCC-hhhCeEEEEEEEeCCCccccEEEEEEEc-CCCCceee--eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence 999 9999999999999888777788888885 55443322 22337889999999999 88899999999954 333
Q ss_pred cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 131 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 131 ~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
... ......++.|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 166 ~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 166 PTP-WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp CGG-GGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred Ccc-ceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 221 11122345799999999999999999999999998888888753
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=172.77 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=119.8
Q ss_pred CCCCCceEEEEEEec---cCCCeEEEEECCEECc----CC--------C-----------CCCCCCCcEEEE---CCeEE
Q psy14886 1 MDNQADLTWTCEAFG---VPDVTYSWFRNGELLN----SE--------T-----------LPLEDQDRYFIQ---DNVLT 51 (505)
Q Consensus 1 v~~G~~~~l~C~~~~---~p~~~~~W~~~~~~l~----~~--------~-----------~~~~~~~~~~~~---~~~L~ 51 (505)
|.+|++++|.|.+.+ .|.+.+.|+|++.... .. . ......+|+.+. +.+|.
T Consensus 14 v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L~ 93 (250)
T 2fbo_J 14 VHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLR 93 (250)
T ss_dssp ECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCEE
T ss_pred EecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceEE
Confidence 468999999999987 6789999999875431 00 0 000123444443 25899
Q ss_pred EEcCCCCCCCeEEEEEEEcccCce-----EeeEEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEE
Q psy14886 52 IRYLNPERDPAMYQCRAKNQLKTR-----YSSAQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124 (505)
Q Consensus 52 i~~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~ 124 (505)
|.+++ .+|+|.|+|.+.+..+.. ...+.|.|... +|.+.... .....+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus 94 I~~v~-~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~-~~~~~v~~g~~v~L~C~~~g~p~p~v~W~ 171 (250)
T 2fbo_J 94 LTHVH-PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVST-AEVVQVDEGNDITMTCPCTDCANANVTWY 171 (250)
T ss_dssp ECSCC-GGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECC-CSEEECCTTCCEEECCCEESCTTCEEEEE
T ss_pred EeeCC-hhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEec-CceEEecCCCcEEEEEEecCCCCCeeEEE
Confidence 99999 999999999999876643 34677777753 23333322 34567788999999999999888999999
Q ss_pred ECCEEecCCC------------------------cEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 125 KDGNIIGSGG------------------------RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 125 ~~g~~~~~~~------------------------~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+++..+.... +........|.|.++..+|+|.|+|.|.|..|..
T Consensus 172 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 172 TGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp EEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred eCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence 9988764321 1112233679999999999999999999966543
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=158.02 Aligned_cols=173 Identities=21% Similarity=0.305 Sum_probs=130.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEec--CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCcee--eeE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE--SKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~--~~~ 172 (505)
....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...++....+++|.|.++...|+|.|+|.+.+..+... ..+
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 89 (189)
T 2v5t_A 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 89 (189)
T ss_dssp SSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred CCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEE
Confidence 34678999999999999998989999999988775 34566666778899999999999999999998875443 335
Q ss_pred EEEEEeCCeeeeeCCC-ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCC
Q psy14886 173 RLIVLHGPSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA 251 (505)
Q Consensus 173 ~l~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 251 (505)
.+.+..+|.+...... ...+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ......+..|.|..+..+
T Consensus 90 ~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~--~v~W~~~g~~~~~~~~-----~~~~~~~~~L~i~~~~~~ 162 (189)
T 2v5t_A 90 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP--AISWFRNGKLIEENEK-----YILKGSNTELTVRNIINS 162 (189)
T ss_dssp EEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC--EEEEEETTEECCCSSS-----EEEETTTTEEEECSCCGG
T ss_pred EEEecCCCCcccccccccccccCCCcEEEEEEEccCCCC--eEEEEECCEECcCCCc-----EEEecCCCEEEEcCCChh
Confidence 5666555554432221 3345679999999999988765 5779999988765321 222334578999999999
Q ss_pred CCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 252 DAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 252 ~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
|.|.|+|.|.|..|.....+.|.|.
T Consensus 163 d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 163 DGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCeeEEEEEEeCCCceeEEEEEEEE
Confidence 9999999999999998888887764
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=162.79 Aligned_cols=182 Identities=20% Similarity=0.218 Sum_probs=129.3
Q ss_pred ceEEeeCC--CeEEEEeecCCCCCCeEEEEEC---CEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 97 SETYAGEG--GNVTIFCNPEAAPKPKFVWKKD---GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 97 ~~~~v~~g--~~v~l~C~~~~~p~~~i~W~~~---g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
..+.+.+| ++++|.|.+.+ |.+.+.|+++ |..+..+.+......+.|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~ 93 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSI 93 (213)
T ss_dssp EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECC
T ss_pred eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEE
Confidence 56778999 99999999976 6689999884 666655545555556679999999999999999999855444333
Q ss_pred -EEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCC-C-cccCCe---eeecCCeE
Q psy14886 172 -GRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL-N-ELETPN---INIDGGLL 243 (505)
Q Consensus 172 -~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~-~-~~~~~~---~~~~~~~l 243 (505)
+.|.|.. .|.+....+..+.+..|+.+.|.|.+.+.+.+.+.+.|.+++..+..... . ...... .....+.|
T Consensus 94 ~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L 173 (213)
T 2x1w_L 94 MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 173 (213)
T ss_dssp CEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEE
T ss_pred EEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEE
Confidence 5666643 23333344445588999999999999987766667889988765322100 0 000000 01223479
Q ss_pred EEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 244 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus 174 ~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 174 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp EESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred EECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 999999999999999999999999999999998765
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=162.99 Aligned_cols=162 Identities=22% Similarity=0.270 Sum_probs=122.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCC--C-----CCCCCCCcEEEE-------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE--T-----LPLEDQDRYFIQ-------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~--~-----~~~~~~~~~~~~-------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|.+.+.|.+.+.|+|++..+... . .......|+... ..+|.|.+++ .+|+|.|+|
T Consensus 7 ~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C 85 (184)
T 2ny1_B 7 GKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLK-IEDSDTYIC 85 (184)
T ss_dssp EETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCC-GGGCEEEEE
T ss_pred EeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCC-HHHCEEEEE
Confidence 468999999999998888999999997531100 0 000113344432 3459999999 999999999
Q ss_pred EEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEE
Q psy14886 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146 (505)
Q Consensus 67 ~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i 146 (505)
.+.+..+ .+.|.|.... . .....+.+|++++|.|.+.+.|.+.+.|++++..+ ....+.|.|
T Consensus 86 ~~~~~~~----~~~l~V~~~~----~---~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~-------~~~~~~L~i 147 (184)
T 2ny1_B 86 EVEDQKE----EVQLLVFGLT----A---NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLSV 147 (184)
T ss_dssp EETTEEE----EEEEEEEEEE----E---SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE-------EEESSEEEE
T ss_pred EEEcCCC----cEEEEEEEec----C---CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc-------ccCceEEEE
Confidence 9987643 4456665311 1 12235789999999999999999999999987544 234678999
Q ss_pred cCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
.++..+|+|.|+|.|.|..+.....+.|.|...|.
T Consensus 148 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred ecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 99999999999999999988888888888876554
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=165.31 Aligned_cols=156 Identities=17% Similarity=0.269 Sum_probs=109.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc-C--ceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL-K--TRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~-~--~~~~ 77 (505)
|.+|++++|.|.+.+.|. .+.|+|++..+.... ...+.....++|.|.+++ .+|+|.|+|.+.|.. + ....
T Consensus 16 v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~----~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~~g~~~~s~ 89 (198)
T 1ugn_A 16 ITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWIT----RIPQELVKKGQFPIPSIT-WEHTGRYRCYYGSDTAGRSESSD 89 (198)
T ss_dssp EETTCCEEEEEECCTTCC-CEEEEESSSCCHHHH----TSCHHHHTTTEEEESSCC-GGGCEEEEEEEEETTTEECCCCC
T ss_pred ccCCCcEEEEEEecCCCc-EEEEEECCccccccc----cccccCCcccEEEECCCC-HHHCeEEEEEEECCCCCcccCCc
Confidence 468999999999988765 699999998764110 011112245789999999 999999999999876 4 2344
Q ss_pred eEEEEEEecC--CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE-EEee----CCCEEEcCCC
Q psy14886 78 SAQLRVLTLK--PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFE----NGNLLISPVS 150 (505)
Q Consensus 78 ~~~l~v~~~~--p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~-~~~~----~~~l~i~~v~ 150 (505)
.+.|.|...+ |.+... +...+.+|++++|.|.+.+. .+.+.|+++|..+...... .... .+.|.|.++.
T Consensus 90 ~~~l~V~~~~~~p~i~~~---~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 165 (198)
T 1ugn_A 90 PLELVVTGAYIKPTLSAQ---PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVS 165 (198)
T ss_dssp CEEEEEECSSCCCEEEEE---SCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCC
T ss_pred cEEEEEcccccCCccccC---CccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccC
Confidence 5777777532 333222 22468899999999999888 7799999999876432211 1111 2579999999
Q ss_pred CCCCEEEEEEEEcCCC
Q psy14886 151 RDDSGIYSCTATNVHG 166 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g 166 (505)
.+|+|.|+|.|.|..+
T Consensus 166 ~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 166 PSRRWWYRCYAYDSNS 181 (198)
T ss_dssp TTSCEEEEEEEECTTS
T ss_pred cccCeEEEEEEEeCCC
Confidence 9999999999999865
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=164.60 Aligned_cols=196 Identities=21% Similarity=0.324 Sum_probs=139.4
Q ss_pred cCCCccCCC--CCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCc----EEEeeCCCEEEcCCCCCCCEEEEE
Q psy14886 86 LKPSFKKRP--LESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----RKIFENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 86 ~~p~~~~~~--~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~----~~~~~~~~l~i~~v~~~d~G~y~C 159 (505)
.+|.|...+ ....+.+.+|+++.|.|.+.+.|.+.+.|+++|..+....+ ........|.|.+++..|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 355544322 13457899999999999999999999999999998764322 223345579999999999999999
Q ss_pred EEEcCCCceeeeEEEEEEeC----CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe----CCEEecCCCCCcc
Q psy14886 160 TATNVHGMDESKGRLIVLHG----PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH----NGVRIGNMDLNEL 231 (505)
Q Consensus 160 ~~~~~~g~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~----~~~~~~~~~~~~~ 231 (505)
.+.+..+.....+.+.|... |......+....+..|+.+.|.|.+.+.|.+ .+.|++ ++..+........
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p--~v~W~~~~~~~g~~~~~~~~~~~ 167 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP--HIQWLKHVEVNGSKVGPDGTPYV 167 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC--EEEEEEECCSSSCSSCTTTCCCE
T ss_pred EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC--EEEEEEcccCCCcccCCCCceee
Confidence 99999888888888888762 2233333456677889999999999988765 677998 6665543321110
Q ss_pred cCCe-----eeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCC
Q psy14886 232 ETPN-----INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283 (505)
Q Consensus 232 ~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~ 283 (505)
.... .......|.|..+..+|.|.|+|.|.|..|.....+.|.|..+|.++.
T Consensus 168 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE 224 (241)
T ss_dssp EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------
T ss_pred eeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCc
Confidence 0000 011235799999999999999999999999999999999998887764
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=176.20 Aligned_cols=168 Identities=23% Similarity=0.271 Sum_probs=133.9
Q ss_pred CCCCceEEEEEEec----------cCCCeEEEEECCEECcCCCCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEE
Q psy14886 2 DNQADLTWTCEAFG----------VPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 2 ~~G~~~~l~C~~~~----------~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~ 67 (505)
.+|+.+.|.|.+.+ .|.+.+.|+|++..+.. ..++... + ..|.|.+++ .+|+|.|+|.
T Consensus 111 ~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~ 182 (317)
T 2y25_A 111 LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY-------SDRVKTGVTGEQIWLQINEPT-PNDKGKYVME 182 (317)
T ss_dssp TCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCC-------CSSEEEEECSSEEEEEEESCC-GGGCEEEEEE
T ss_pred ccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCC-------CCCeEEeccCCEEEEEECcCC-cccCeeEEEE
Confidence 47888888888876 68899999999998873 3444442 2 349999999 9999999999
Q ss_pred EEcccCceEeeEEEEEEe-------------------cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCE
Q psy14886 68 AKNQLKTRYSSAQLRVLT-------------------LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128 (505)
Q Consensus 68 ~~~~~~~~~~~~~l~v~~-------------------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~ 128 (505)
+.|..+.....+.+.|.. .+|.+... .+....+.+|+.+.|.|.+.|.|.+.+.|+++|.
T Consensus 183 a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~ 261 (317)
T 2y25_A 183 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 261 (317)
T ss_dssp EECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEB-CCSEEEEETTSBBCEEEEEECSSCCEEEEEESSS
T ss_pred EEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCccccc-CCccEEEEcCCEEEEEEEEecCCCCEEEEEECCE
Confidence 999888777666666531 01222211 1345678999999999999999999999999999
Q ss_pred EecCCCcEEEeeC-C---CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 129 IIGSGGRRKIFEN-G---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 129 ~~~~~~~~~~~~~-~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
.+..+.++.+... + .|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 262 ALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 9987777666544 4 699999999999999999999999998888888853
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=179.06 Aligned_cols=176 Identities=24% Similarity=0.423 Sum_probs=135.7
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
.+|+.++|.|.+.+.|.+.+.|+|++..+...... ..........+|.|.+++ .+|+|.|+|.+.|..|.....+.|
T Consensus 136 ~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l 212 (334)
T 1ry7_B 136 PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI--GGIKLRHQQWSLVMESVV-PSDRGNYTCVVENKFGSIRQTYTL 212 (334)
T ss_dssp ETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSST--TCCCCCTTTTEEEECSCC-GGGCCCEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEEEEEEccCCCCCeEEEEECCEECcccccc--cceecccceEEEEECCCC-cccCEEEEEEEEeCCCCEEEEEEE
Confidence 47999999999999999999999999887643110 000111134689999999 999999999999998888778888
Q ss_pred EEEecCC---CccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE----CCEEecCCCcE--EEee----------CC
Q psy14886 82 RVLTLKP---SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK----DGNIIGSGGRR--KIFE----------NG 142 (505)
Q Consensus 82 ~v~~~~p---~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~----~g~~~~~~~~~--~~~~----------~~ 142 (505)
.|...++ .+... .+....+.+|+.+.|.|.+.+.|.+.+.|++ +|..+..+... .+.. ..
T Consensus 213 ~V~~~~~~~p~~~~~-~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (334)
T 1ry7_B 213 DVLERSPHRPILQAG-LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291 (334)
T ss_dssp EEECCCCSSCBCCTT-CSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCC
T ss_pred EEecCCCCCCceEec-CCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccccc
Confidence 8886332 22221 2345678999999999999999999999999 67666543221 1111 12
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
.|.|.++..+|+|.|+|.|.|..|.....+.|.|...|+
T Consensus 292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp CEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred EEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 699999999999999999999999999999999977654
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=169.88 Aligned_cols=171 Identities=15% Similarity=0.189 Sum_probs=119.8
Q ss_pred CceEEeeCCCeEEEEeecCCC-CCCeEEEEECCEEec---------CCCcEEE--------eeCCCEEEcCCCCCCCEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIG---------SGGRRKI--------FENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~~~~---------~~~~~~~--------~~~~~l~i~~v~~~d~G~y 157 (505)
+..+.+.+|+++.|.|.+.+. |.+.+.|++++.... ...+... .....|.|.+++.+|+|.|
T Consensus 10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 89 (327)
T 2wng_A 10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTY 89 (327)
T ss_dssp CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEE
T ss_pred CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEE
Confidence 356789999999999999987 888999999875321 1113332 2234699999999999999
Q ss_pred EEEEEcCCCce-----eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc-
Q psy14886 158 SCTATNVHGMD-----ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL- 231 (505)
Q Consensus 158 ~C~~~~~~g~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~- 231 (505)
+|.+.|..+.. ...+.|.|...|.......+...+..|+.+.|.|.+.+.+++.+.+.|+++|..+........
T Consensus 90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~ 169 (327)
T 2wng_A 90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP 169 (327)
T ss_dssp EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEEC
T ss_pred EEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccccc
Confidence 99999986642 134677777655432222334567889999999999998876668889999988764321000
Q ss_pred -cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 232 -ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 232 -~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.........+.|.|.....++.|.|+|.|.|..+.
T Consensus 170 ~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 170 VGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp SSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred ccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence 00011111235667767777789999999998876
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=162.30 Aligned_cols=144 Identities=19% Similarity=0.337 Sum_probs=108.0
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEc-CCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRY-LNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~-~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
+|++++|.|.+.+ +. .|+|+|+|..+... .+.+|.|.+ ++ .+|+|.|+|.|.|..|.......+
T Consensus 13 ~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------------~~~~L~I~~~~~-~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 13 SGTSVELTCPLDS-DE-NLKWEKNGQELPQK------------HDKHLVLQDFSE-VEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp ETTEEEEECSSCC-CT-TCEEEETTEEECSC------------CCSEEEEESCCT-TTSCEEEEEECSSCCCCCCEEECC
T ss_pred CCcEEEEEEeCCC-CC-ceEEEECCEECCCC------------CCCEEEECCCCc-cccCEEEEEEEEeCCCcEEEEEEE
Confidence 5999999999987 43 49999999998732 245899999 99 999999999999988875444444
Q ss_pred EEEecCCCc-----------------c--CCCCCce---EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe
Q psy14886 82 RVLTLKPSF-----------------K--KRPLESE---TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF 139 (505)
Q Consensus 82 ~v~~~~p~~-----------------~--~~~~~~~---~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~ 139 (505)
.|....+.. . ....... ..+.+|+++.|.|.+ |.+.+.|+|+|..+.....
T Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---- 150 (186)
T 1jbj_A 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---- 150 (186)
T ss_dssp CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----
T ss_pred EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----
Confidence 443321111 0 0000001 124499999999998 7789999999999864322
Q ss_pred eCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 140 ENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 45679999999999999999999987754
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=162.76 Aligned_cols=186 Identities=22% Similarity=0.350 Sum_probs=138.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCc----EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~----~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
....+.+|+++.|.|.+.+.|.+.+.|+++|..+....+ ........|.|.++...|+|.|+|.+.|..+.....+
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~ 106 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY 106 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence 456789999999999999989899999999998864332 2223345799999999999999999999988888788
Q ss_pred EEEEEeCC----eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe----CCEEecCCCCCcccC----CeeeecC
Q psy14886 173 RLIVLHGP----SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH----NGVRIGNMDLNELET----PNINIDG 240 (505)
Q Consensus 173 ~l~v~~~p----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~----~~~~~~~~~~~~~~~----~~~~~~~ 240 (505)
.|.|...+ ......+....+..|+.+.|.|.+.+.|.+ .+.|++ +|..+.......... .......
T Consensus 107 ~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
T 3ojm_B 107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP--HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184 (231)
T ss_dssp EEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC--EEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCT
T ss_pred EEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC--EEEEEECCCCCCccccCCCcceEeEecccccccCCc
Confidence 88887632 222223456778899999999999998766 667988 666554322111000 0011234
Q ss_pred CeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCc
Q psy14886 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284 (505)
Q Consensus 241 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~ 284 (505)
..|.|..+..+|.|.|+|.|.|..|.....+.|.|..+|.+|..
T Consensus 185 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~ 228 (231)
T 3ojm_B 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228 (231)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred cEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence 57999999999999999999999999999999999999888754
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=169.04 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=164.8
Q ss_pred ceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.+|+.+.|.|... +.|.+.+.|++++..+....++.+...+ .|.|.++..+|+|.|+|.+.|..|... .+
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~ 87 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SY 87 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EE
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EE
Confidence 346788999999998875 5688899999999999877777766544 699999999999999999999888544 45
Q ss_pred EEEEEe------------CCeeeeeCCCceEEEeeccEEEEEEee-ecCCCCeEEEEEeCCEEecCCCCCcccCCeeee-
Q psy14886 173 RLIVLH------------GPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238 (505)
Q Consensus 173 ~l~v~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~- 238 (505)
.+.|.. .|.+.........+..|+.+.|.|.+. +.|. ..+.|++++..+..... .....
T Consensus 88 ~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~--~~v~W~~~~~~i~~~~~-----~~~~~~ 160 (312)
T 2y23_A 88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGN--AKVNYIFNEKEIFEGPK-----YKMHID 160 (312)
T ss_dssp EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSS--CEEEEEETTEEECSSSS-----CEEEEE
T ss_pred EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCC--CEEEEEECCEECeeCCc-----EEEEEc
Confidence 555532 444433322356778899999999998 5554 46779999998876421 11111
Q ss_pred ---cCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE-------------------cCCCCCCCceEEEEEeCCeEE
Q psy14886 239 ---DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV-------------------EGPPGLPGGVQVVEVHKTSAT 296 (505)
Q Consensus 239 ---~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v-------------------~~~p~~p~~~~~~~~~~~~v~ 296 (505)
....|.|..+..+|.|.|+|.+.+..+.......+.. ..+|.....+......+..+.
T Consensus 161 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~ 240 (312)
T 2y23_A 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240 (312)
T ss_dssp TTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEE
T ss_pred cCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEE
Confidence 1134999999999999999999875544433333310 011211111234455778899
Q ss_pred EEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 297 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 297 l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
|.|.... ..+...+.|.. .+. ......... ...+...+.+.+ +...+.+.|+|.|.|..|...
T Consensus 241 l~C~~~~--~p~~~~v~W~~--~g~--~~~~~~~~~-----~~~~~~~L~I~~-v~~~d~G~Y~C~a~N~~G~~~ 303 (312)
T 2y23_A 241 LKCKVAN--IKKETHIVWYK--DER--EISVDEKHD-----FKDGICTLLITE-FSKKDAGIYEVILKDDRGKDK 303 (312)
T ss_dssp EEEEEES--CCSSCEEEEEE--TTE--EEEEECCC---------CEEEEEECS-CSGGGCEEEEEEEESTTCCEE
T ss_pred EEEEEcC--CCCCCEEEEee--CCE--ECCCCCcEE-----EECCEEEEEECc-CCHHHCEEEEEEEEcCCCcee
Confidence 9998431 11111333322 110 011000000 001223445555 999999999999999999764
|
| >3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-19 Score=166.83 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=165.4
Q ss_pred cCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEe
Q psy14886 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART 318 (505)
Q Consensus 239 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~ 318 (505)
....+.+..+.....+.|+..|.|..|.............| +|.++.+.....+++.|+|+++. +.++.+|.|+++.
T Consensus 57 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~--~~~i~~Y~v~~~~ 133 (375)
T 3t1w_A 57 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVA 133 (375)
T ss_dssp TCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCC-CCSCCEEECCCSSEEEEECCCCC--CTTEEEEEEEEEE
T ss_pred CccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCC-CCceEEEEecCCCeEEEEEECCC--CCCceEEEEEEEE
Confidence 45678899998888899999999877754433333334445 47889998889999999999874 4678999999987
Q ss_pred CCCCC-eEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeec
Q psy14886 319 NWNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397 (505)
Q Consensus 319 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~ 397 (505)
.+... +...... .....+.+.+ |.+++.|.|+|.|.|..|.|.++.. ...+ .+ .+|.++.+..
T Consensus 134 ~~~~~~~~~~~~~---------~~~~~~~i~~-L~p~t~Y~~~V~a~~~~g~s~~s~~--~~~t---~~-~~p~~l~~~~ 197 (375)
T 3t1w_A 134 AGEGIPIFEDFVD---------SSVGYYTVTG-LEPGIDYDISVITLINGGESAPTTL--TQQT---AV-PPPTDLRFTN 197 (375)
T ss_dssp SSSCCSCEEEEEC---------TTCCEEEEEC-CCTTCEEEEEEEEEETTEECCCEEE--EEEC---CC-CCCEEEEEES
T ss_pred CCCCCceeEEEcC---------CCcceEEEeC-CCCCCEEEEEEEEEeCCcccCCeee--eeec---CC-CCCceeEEEe
Confidence 65432 2221111 1223445555 9999999999999999999887654 3333 23 3788999988
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
...+++.|.|+++ .++.+.+|.|+|+..+ ...|....... ....+.|.+|.|++.|.|+|.|+|..|.|++
T Consensus 198 ~~~~si~l~W~~p----~~~~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~ 269 (375)
T 3t1w_A 198 IGPDTMRVTWAPP----PSIDLTNFLVRYSPVKNEEDVAELSISP----SDNAVVLTNLLPGTEYVVSVSSVYEQHESTP 269 (375)
T ss_dssp CCSSCEEEEEECC----SSCCCCEEEEEEEEGGGTTCCEEEEECT----TCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred cccCEEEEEEcCC----CCCCccEEEEEEEeCCCCCCcEEEEcCC----CcCEEEeCCCCCCCEEEEEEEEEcCCCcCCc
Confidence 8899999999983 2477999999999877 34555444332 3467889999999999999999999999987
Q ss_pred CceEEEeecceEEEEE
Q psy14886 477 SEVVTIWHDPLVIISY 492 (505)
Q Consensus 477 s~~~~~~t~p~~~~~~ 492 (505)
+... ..|.|.....+
T Consensus 270 ~~~~-~~t~p~~P~~l 284 (375)
T 3t1w_A 270 LRGR-QKTGLDSPTGI 284 (375)
T ss_dssp EEEE-EECCCCCCEEE
T ss_pred eeeE-EecCCCCCCcc
Confidence 7543 44554433333
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=156.22 Aligned_cols=175 Identities=21% Similarity=0.366 Sum_probs=136.0
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCC--cEEEe--e--------CCCEEEcCCCCCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGG--RRKIF--E--------NGNLLISPVSRDD 153 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~--~~~~~--~--------~~~l~i~~v~~~d 153 (505)
+|.|...+ ....+.+|+++.|.|.+. +.|.+.+.|+++|..+.... +..+. . .+.|.|.++...|
T Consensus 2 ~~~~~~~p--~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 79 (195)
T 2c5d_C 2 ESPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79 (195)
T ss_dssp CCSEEECC--CCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred CCeeccCh--hheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence 45555554 556799999999999998 88889999999999987652 22222 1 2469999999999
Q ss_pred CEEEEEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCccc
Q psy14886 154 SGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 232 (505)
+|.|+|.+.+..+..... +.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ ..+.|++++..+......
T Consensus 80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p-~~v~W~~~~~~~~~~~~~--- 154 (195)
T 2c5d_C 80 TGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEP-VDLLWLQDAVPLATAPGH--- 154 (195)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEECCSCEEEE-CCCCEEECTTCCEEEEEEEECSSCC-CEEEEEESSCBSSSSTTS---
T ss_pred CcEEEEEEEeCCCceecccEEEEEecCCeEEc-CCCcEEEcCCCEEEEEeECCCCCCC-CEEEEEECCEeccCCCCc---
Confidence 999999999987765554 7888877776544 4556778889999999999988765 156799998877653211
Q ss_pred CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE-EEEEEEE
Q psy14886 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS-TKTTVIV 275 (505)
Q Consensus 233 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~v 275 (505)
.....|.|..+. |.|.|+|.|.|..|... ..+.|.|
T Consensus 155 -----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 -----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp -----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred -----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 345678888876 78999999999999885 6888887
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=159.86 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=124.6
Q ss_pred EEeeCCCeEEEEeecCCCCCCe-EEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~-i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
..+.+|++++|.|.+.+.|.+. +.|+++|..+... .+.|.|.+++.+|+|.|+|.+.|. .....+.|.|.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-------~~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V~ 87 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------ASSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVH 87 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-------SSEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEEE
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-------ccEEEEecccccCCEEEEEEeCCC--cccccEEEEEe
Confidence 5689999999999999987764 9999999988654 267999999999999999999874 44456778887
Q ss_pred eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEE
Q psy14886 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257 (505)
Q Consensus 178 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 257 (505)
..|..... ....+..|+.+.|.|.+.+.++ ...+.|+++|..+.. ......|.|..+..+|.|.|+
T Consensus 88 ~~p~~~~~--~~~~v~~G~~v~L~C~~~~~~p-~~~v~W~k~g~~~~~-----------~~~~~~L~i~~v~~~D~G~Y~ 153 (204)
T 3sgj_C 88 IGWLLLQA--PRWVFKEEDPIHLRCHSWKNTA-LHKVTYLQNGKGRKY-----------FHHNSDFYIPKATLKDSGSYF 153 (204)
T ss_dssp CSSEEEEC--SCSEEETTCCEEEEEEEGGGCC-CEEEEEEETTEEEEE-----------EEECCCEEESSCCGGGCEEEE
T ss_pred cCceEecC--CceeEeCCCcEEEEEEecCCCC-CceEEEEECCcEeec-----------ccCCceEEECcCCcccCEEEE
Confidence 77655433 3367788999999999977643 357789999987643 123568999999999999999
Q ss_pred EEEEec-CCcEEEEEEEEEcCCCCCCC
Q psy14886 258 CVVKST-VGKISTKTTVIVEGPPGLPG 283 (505)
Q Consensus 258 C~~~n~-~g~~~~~~~l~v~~~p~~p~ 283 (505)
|.|.|. .+..+..+.|.|..+|..|.
T Consensus 154 C~a~n~~~~~~s~~~~l~V~~~~~~P~ 180 (204)
T 3sgj_C 154 CRGLVGSKNVSSETVQITITQGLAVST 180 (204)
T ss_dssp EEEEETTEEEECCCEEEEEEC------
T ss_pred EEEEeCCCceecCcEEEEEeCcCCCCc
Confidence 999994 44556678888888776653
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=159.20 Aligned_cols=156 Identities=22% Similarity=0.314 Sum_probs=117.7
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.+.+. ..+.|+|++..+.. .+++|.|.+++ .+|+|.|+|.+.+..+ ...+
T Consensus 16 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-------------~~~~L~i~~v~-~~d~G~Y~C~~~~~~~--s~~~ 79 (176)
T 1f2q_A 16 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------------TNSSLNIVNAK-FEDSGEYKCQHQQVNE--SEPV 79 (176)
T ss_dssp EETTCCEEEECCTTCC----CCEEEETTEECSC-------------CSSEEEECSCC-GGGCEEEEEECTTSSC--CCCE
T ss_pred eecCCcEEEEEeCCCCCCcceEEEEECCeECCC-------------CceEEEEeccc-eecCEEEEEEcCCccc--cccE
Confidence 468999999999988776 46999999998862 25799999999 9999999999987554 3356
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
.|.|.. ++..... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+.... .++.|.|.++..+|+|.|+
T Consensus 80 ~l~V~~-~~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-----~~~~L~i~~v~~~d~G~Y~ 150 (176)
T 1f2q_A 80 YLEVFS-DWLLLQA---SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYY 150 (176)
T ss_dssp EEEEEC-SSEEEEE---SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCCGGGCEEEE
T ss_pred EEEEeC-cceeecC---CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-----CCCeEEECCCCcccCEEEE
Confidence 666662 3322221 224578999999999994 56677999999999875321 2467999999999999999
Q ss_pred EEEEcCCCce-eeeEEEEEEeCCe
Q psy14886 159 CTATNVHGMD-ESKGRLIVLHGPS 181 (505)
Q Consensus 159 C~~~~~~g~~-~~~~~l~v~~~p~ 181 (505)
|.|.|..+.. ...+.|.|..+|.
T Consensus 151 C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 151 CTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp EEEEETTEEEECCCEEEEEECSCC
T ss_pred EEEEeCCcceEecCEEEEEecCCC
Confidence 9999974443 3447888876653
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-20 Score=153.01 Aligned_cols=172 Identities=22% Similarity=0.379 Sum_probs=132.6
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEE
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~ 162 (505)
|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+....+...... +.|.|.++..+|+|.|+|.+.
T Consensus 3 ~~~~~~p--~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 3 LKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp ----CCC--EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred CEEEeCC--cceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 3444443 567899999999999999988899999999998876654444332 469999999999999999999
Q ss_pred cCCCce-eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC
Q psy14886 163 NVHGMD-ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241 (505)
Q Consensus 163 ~~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (505)
+..+.. ...+.|.|..+|.+... +....+..|+.+.|.|.+.+.|.| ..+.|++++..+.... ....
T Consensus 81 ~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p-~~v~W~~~~~~~~~~~----------~~~~ 148 (182)
T 1rhf_A 81 DGGETEISQPVWLTVEGVPFFTVE-PKDLAVPPNAPFQLSCEAVGPPEP-VTIVWWRGTTKIGGPA----------PSPS 148 (182)
T ss_dssp SCTTCEECCCEEEEEECSCEEEEC-CCCEEECTTCCEEEEEEEECSSSC-CEEEEEETTEECSCSE----------ESSE
T ss_pred cCCCcEEEEEEEEEEecCCeEEec-CcceEecCCCEEEEEeEecCCCCC-CEEEEEcCCeECCCCC----------CCce
Confidence 987754 45688888877766543 556778899999999999987765 2677999998875421 1456
Q ss_pred eEEEecCCCCCCEEEEEEEEecCCcEEE-EEEEEE
Q psy14886 242 LLEITNASFADAGEYECVVKSTVGKIST-KTTVIV 275 (505)
Q Consensus 242 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~-~~~l~v 275 (505)
.|.|..+ +|.|.|+|.|.|..|.... .+.|.|
T Consensus 149 ~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 149 VLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp EEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 7888877 5889999999999998753 666665
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=165.78 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=113.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc--eEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT--RYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~--~~~~ 78 (505)
|.+|++++|.|.+.+ +.+.+.|+|++..+......... ....++|.|.+++ .+|+|.|+|.+.|..+. ....
T Consensus 16 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~----~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~s~~ 89 (196)
T 3p2t_A 16 ISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLE----PKNKARFSIPSMT-EDYAGRYRCYYRSPVGWSQPSDP 89 (196)
T ss_dssp EETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCS----SSSEEEEEESSCC-GGGCEEEEEEEEETTEEBCCCCC
T ss_pred CCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccccc----CCceEEEEeccCC-cccCceEEEEEeCCCcccCCCcc
Confidence 468999999999988 67899999999877521000000 0124689999999 99999999999998772 2335
Q ss_pred EEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE----EEeeCCCEEEcCCCCC
Q psy14886 79 AQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR----KIFENGNLLISPVSRD 152 (505)
Q Consensus 79 ~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~----~~~~~~~l~i~~v~~~ 152 (505)
+.|.|... +|.+...+ . ..+.+|++++|.|.+.+. .+.+.|+++|..+...... .....+.|.|.+++.+
T Consensus 90 ~~l~V~~~~~~p~~~~~~--~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 165 (196)
T 3p2t_A 90 LELVMTGAYSKPTLSALP--S-PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSV 165 (196)
T ss_dssp EEEEEECSSCCCEEEEES--C-SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGG
T ss_pred EEEEecCCCCCCEEEeCC--c-ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEEEeCCCccc
Confidence 67777642 23333332 1 257899999999998774 4589999999866433221 1123467999999999
Q ss_pred CCEEEEEEEEcCCC
Q psy14886 153 DSGIYSCTATNVHG 166 (505)
Q Consensus 153 d~G~y~C~~~~~~g 166 (505)
|+|.|+|.|.|..+
T Consensus 166 d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 166 HGGTYRCFSSHGFS 179 (196)
T ss_dssp GCEEEEEEEECGGG
T ss_pred CCCeEEEEEEcCCC
Confidence 99999999999865
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=168.86 Aligned_cols=203 Identities=18% Similarity=0.248 Sum_probs=117.5
Q ss_pred CCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-----CCeEEEEEC--C
Q psy14886 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-----KPKFVWKKD--G 127 (505)
Q Consensus 55 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-----~~~i~W~~~--g 127 (505)
++ .+|+|.|+|.|. |.......+.+.. ++.+...+ ..+.+.+|++++|.|.+.+.+ .+.+.|+++ +
T Consensus 11 v~-~~dsg~Y~C~a~---g~~~~~~~~~~~~-~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g 83 (254)
T 2c1o_A 11 VR-PGTSVKLSCKAS---GYSFTNYWMNWLR-ELVMTQSP--LTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPG 83 (254)
T ss_dssp --------------------------------CCCEEEEC--SEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTT
T ss_pred ec-CCccEEEEEcCc---hhhhhhhhhheee-ceeEEeCC--ceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCC
Confidence 56 899999999998 4444444444443 44444333 557899999999999998887 489999973 3
Q ss_pred EEe------------cCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEEEe---CCeeeeeCCC
Q psy14886 128 NII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH---GPSYYEQLPP 188 (505)
Q Consensus 128 ~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v~~---~p~~~~~~~~ 188 (505)
..+ ....++.....+ +|.|.+++.+|+|.|+|.|.|..+.... ...+.|.. +|.+....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~- 162 (254)
T 2c1o_A 84 QSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPP- 162 (254)
T ss_dssp SCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECC-
T ss_pred CCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecC-
Confidence 221 112455444333 6999999999999999999987654332 24566643 333332222
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC-----cccCCeeeecCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----ELETPNINIDGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
......|+.+.|.|.+.+.+++.+.+.|+++|..+...... ......+ ...+.|.|..+..+|.|.|+|.|.|.
T Consensus 163 ~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~ 241 (254)
T 2c1o_A 163 SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY-SMSSTLTLTKDEYERHNSYTCEATHK 241 (254)
T ss_dssp CHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCE-EEEEEEEEEHHHHHTCCEEEEEEECT
T ss_pred ChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcE-EEEEEEEeccccccCCCeEEEEEEcC
Confidence 22223577899999999865555678899999887653000 0000111 12357889999889999999999997
Q ss_pred CCc
Q psy14886 264 VGK 266 (505)
Q Consensus 264 ~g~ 266 (505)
...
T Consensus 242 ~~~ 244 (254)
T 2c1o_A 242 TST 244 (254)
T ss_dssp TCS
T ss_pred CCC
Confidence 765
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=158.23 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=127.4
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECC-EEecCCCcEEE-eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g-~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
..+.+|+++.|.|.+.|.|.+.+.|+++. ..+. ..... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V 88 (202)
T 1vca_A 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88 (202)
T ss_dssp EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEE
Confidence 44569999999999999999999999843 2211 11111 12335999999999999999999999887777788999
Q ss_pred EeCCeeeeeCCCceEEEeeccEEEEEEeeecCC-CCeEEEEEeCCEEecCCCCCcccC-CeeeecCCeEEEecCCCCCCE
Q psy14886 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELET-PNINIDGGLLEITNASFADAG 254 (505)
Q Consensus 177 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g 254 (505)
..+|......+. ..+..|+.++|.|.+.+.++ +.+.+.|++++..+.......... .........|.|.....++.|
T Consensus 89 ~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g 167 (202)
T 1vca_A 89 YSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167 (202)
T ss_dssp EBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTC
T ss_pred EeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCC
Confidence 877654433333 56889999999999998644 346789999998775422111000 001112235677777788899
Q ss_pred EEEEEEEecCCc-------EEEEEEEEEcCCCC
Q psy14886 255 EYECVVKSTVGK-------ISTKTTVIVEGPPG 280 (505)
Q Consensus 255 ~y~C~~~n~~g~-------~~~~~~l~v~~~p~ 280 (505)
.|+|.|.|..|. .+.++.|.|..+|.
T Consensus 168 ~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 168 VLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred eEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 999999998875 35677888887764
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=160.47 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=115.8
Q ss_pred CCCCceEEEEEEec--cCCCeEEEEECCEECcC---CCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEAFG--VPDVTYSWFRNGELLNS---ETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~~~--~p~~~~~W~~~~~~l~~---~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|++++|.|...+ .+.+.|.|+|++..+.. ........+|+.+ .+++|.|.+++ .+|+|.|+|.+.|..|..
T Consensus 9 ~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~-~~D~G~Y~C~~~n~~g~~ 87 (176)
T 1hng_A 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT-RDDSGTYNVTVYSTNGTR 87 (176)
T ss_dssp ETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCC-GGGCEEEEEEEEETTCCE
T ss_pred EcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccc-cccCEEEEEEEEeCCCCE
Confidence 57999999995433 45678999999976531 1111123567766 46779999999 999999999999988886
Q ss_pred --EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCC
Q psy14886 76 --YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDD 153 (505)
Q Consensus 76 --~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d 153 (505)
...+.|.|...+. .+.+ ...+..+.|.|.+.+.|.+.+.|+++|..+.... .+.|..+..+|
T Consensus 88 ~~~~~~~l~V~~~~~-------~p~i-~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~--------~~~i~~~~~~d 151 (176)
T 1hng_A 88 ILNKALDLRILEMVS-------KPMI-YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR--------QKTMSYQWTNL 151 (176)
T ss_dssp EEEEEEEEEEECCCC-------CCEE-EEETTTTEEEEECSSCSSCEEEEEETTEEEEEES--------SSEEEEECSCC
T ss_pred EEEEEEEEEEeCCCC-------CCEE-EecCCcEEEEEEecCCCCcEEEEEECCEECCCCC--------cEEEEEEEccC
Confidence 4456777764211 1222 2335569999999999999999999998875432 24556788999
Q ss_pred CEEEEEEEEcCCCceeeeEEEE
Q psy14886 154 SGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.|.|+|.|.|..|.....+.|.
T Consensus 152 ~G~Y~C~a~N~~g~~~~~~~l~ 173 (176)
T 1hng_A 152 RAPFKCKAVNRVSQESEMEVVN 173 (176)
T ss_dssp SSCEEEEEEETTEEEEEEECCC
T ss_pred CeEEEEEEEecCCCceeccccc
Confidence 9999999999999877765543
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=164.87 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=116.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcE--EEECC--eEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY--FIQDN--VLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~--~~~~~--~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|++++|.|.+.+ +.+.|.|+|+|..+... ..+. ....+ +|.|.+++ .+|+|.|+|.+.|..+...
T Consensus 20 v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~------~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~~~~~ 91 (218)
T 1uct_A 20 IPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYRE------IGRRLKFWNETDPEFVIDHMD-ANKAGRYQCQYRIGHYRFR 91 (218)
T ss_dssp EETTCCEEEEECCCT-TCSEEEEEEEETTEEEE------CSEECC----CCCEEEECSCC-GGGCEEEEEEEEETTTEEE
T ss_pred cCCCCCEEEEEEcCC-CCCEEEEEECCCccccc------ccccCCCCcceeeEEEEcccc-cccCEEEEEEEEcCCCcee
Confidence 458999999999987 67899999998765421 0111 12345 89999999 9999999999998765332
Q ss_pred --eeEEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 77 --SSAQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 77 --~~~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
..+.|.|... +|.+...+ ...+.+|++++|.|.+.+.+.+.+.|+|+|..+... ......++.|.|.+++.+
T Consensus 92 ~s~~~~l~V~~~~~~P~i~~~p---~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~~~~~~~L~I~~v~~~ 167 (218)
T 1uct_A 92 YSDTLELVVTGLYGKPFLSADR---GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQSGEHPANFSLGPVDLN 167 (218)
T ss_dssp ECCCEEEEEECSSCCCEEEESS---CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEECSSSEEEECCSCCGG
T ss_pred ecCCEEEEEcCcccCCEEEeCC---CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccCCCccCEEEEccCCcc
Confidence 3466777642 34343332 236889999999997667777899999999876542 222223457999999999
Q ss_pred CCEEEEEEEEcCCC-----ceeeeEEEEEEe
Q psy14886 153 DSGIYSCTATNVHG-----MDESKGRLIVLH 178 (505)
Q Consensus 153 d~G~y~C~~~~~~g-----~~~~~~~l~v~~ 178 (505)
|+|.|+|.|.+... ..+..+.|.|..
T Consensus 168 D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 168 VSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp GCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred cCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 99999999997532 222335566643
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=165.87 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=103.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce--Eee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR--YSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~--~~~ 78 (505)
|.+|++++|.|.+.+.|. .+.|+|++..+..... ..+....++.|.|.+++ .+|+|.|+|.+.|..+.. ...
T Consensus 16 v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~----~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~s~~ 89 (196)
T 2d3v_A 16 ISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ----NPLEPKNKARFSIPSMT-EHHAGRYRCYYYSPAGWSEPSDP 89 (196)
T ss_dssp EETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE----CCCSSTTEEEEEESSCC-GGGCEEEEEEEEETTEECBCCCC
T ss_pred ccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc----cccCCccccEEEeccCC-hhHCeEEEEEEeCCCCcCCcCcc
Confidence 468999999999988665 9999999987652100 00001124689999999 999999999998876533 234
Q ss_pred EEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE-EEe----eCCCEEEcCCCC
Q psy14886 79 AQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIF----ENGNLLISPVSR 151 (505)
Q Consensus 79 ~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~-~~~----~~~~l~i~~v~~ 151 (505)
+.|.|... +|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+...... ... ..+.|.|.+++.
T Consensus 90 ~~l~V~~~~~~p~i~~~~---~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 165 (196)
T 2d3v_A 90 LELVVTGFYNKPTLSALP---SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP 165 (196)
T ss_dssp EEEEEECSSCCCEEEC--------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBT
T ss_pred EEEEecCCCCCCeEEccC---CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCc
Confidence 67777753 34443332 24688999999999999988 899999999876432111 111 124699999999
Q ss_pred CCCEEEEEEEEcCCC
Q psy14886 152 DDSGIYSCTATNVHG 166 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g 166 (505)
+|+|.|+|.|.|..+
T Consensus 166 ~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 166 SHRWMLRCYGSRRHI 180 (196)
T ss_dssp TBCEEEEEEEEETTE
T ss_pred ccCeeEEEEEEccCC
Confidence 999999999998654
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-19 Score=154.34 Aligned_cols=171 Identities=22% Similarity=0.268 Sum_probs=134.9
Q ss_pred EeeCCCeEEEEeecCCC-CCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....++.+.|.|.+.+. |.+.+.|+++|..+....++.+...+ .|.|.++..+|+|.|+|.+.|..+.....+.+.
T Consensus 13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~ 92 (212)
T 2r15_A 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92 (212)
T ss_dssp EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence 34578889999999886 57899999999999877776665444 399999999999999999999888777666665
Q ss_pred EEe--------------------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCe
Q psy14886 176 VLH--------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235 (505)
Q Consensus 176 v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 235 (505)
+.. .|......+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... ..
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~~~-----~~ 165 (212)
T 2r15_A 93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP--EVSWLKNEKALAQTDH-----CN 165 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCC--EEEEEETTEEECCCSS-----EE
T ss_pred EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCc--eEEEEECCeECccCCC-----EE
Confidence 532 44555555556788899999999999988766 4679999998875421 11
Q ss_pred eeec---CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 236 INID---GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 236 ~~~~---~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
.... ...|.|..+..+|.|.|+|.|.|..|.....+.|.|..
T Consensus 166 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 166 LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp EEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 1111 23899999999999999999999999998888888864
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=171.59 Aligned_cols=264 Identities=18% Similarity=0.134 Sum_probs=152.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCC-----------CeEEEEECCE------Eec--CCCcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPK-----------PKFVWKKDGN------IIG--SGGRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~-----------~~i~W~~~g~------~~~--~~~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|+.+.|.|.+.+.|. +.+.|++++. .+. .........++.|.|.+++.+|+|.|
T Consensus 15 ~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 94 (349)
T 4dep_C 15 RQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNY 94 (349)
T ss_dssp CCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEE
T ss_pred eeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEE
Confidence 3467899999999999998664 8999999873 221 11222234467899999999999999
Q ss_pred EEEEEcCCCceeeeEEEEEEeCCeeeeeC---CCceEEEeeccEEEEEEe-----eecCCCCeEEEEEeCCEEecCCCCC
Q psy14886 158 SCTATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLN 229 (505)
Q Consensus 158 ~C~~~~~~g~~~~~~~l~v~~~p~~~~~~---~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~~w~~~~~~~~~~~~~ 229 (505)
+|.|.|..+.....+.|.|..++...... +....+..|+.+.|.|.+ .+.|. ..+.|++++..+...
T Consensus 95 ~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~--~~v~W~k~~~~l~~~--- 169 (349)
T 4dep_C 95 TCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK--PTITWYMGCYKIQNF--- 169 (349)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSC--CEEEEEETTEECCSC---
T ss_pred EEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCC--ceEEEeeCCEECCCc---
Confidence 99999998888888889887755432211 224456789999999975 44444 467799999987542
Q ss_pred cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC-CcE---EEEEEEEEcCCCC---CCCce-----EE-EEEeCCeEE
Q psy14886 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTV-GKI---STKTTVIVEGPPG---LPGGV-----QV-VEVHKTSAT 296 (505)
Q Consensus 230 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~-g~~---~~~~~l~v~~~p~---~p~~~-----~~-~~~~~~~v~ 296 (505)
......+..|.|.++..+|.|.|+|.|.|.. |.. +..+.|.+..++. +|... .+ ....+..+.
T Consensus 170 ----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~ 245 (349)
T 4dep_C 170 ----NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL 245 (349)
T ss_dssp ----SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------C
T ss_pred ----cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEE
Confidence 2334455789999999999999999999987 554 5667777765432 22111 10 223445566
Q ss_pred EEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeee---c---CceeeEEeeeccCCce-eEEEEEEEcCCC
Q psy14886 297 IQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY---T---GRKEASIENVLVPWST-YEFKVIAGNELG 368 (505)
Q Consensus 297 l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~---~---~~~~~~~~~~L~~~~~-y~~~v~a~n~~G 368 (505)
|.|..... .+.|...+.|.. .+... ............... . ....+.+.+ +...+. +.|+|.|.|..|
T Consensus 246 l~C~~~~~~~g~p~p~v~W~~--~g~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~~G~Y~C~a~N~~G 321 (349)
T 4dep_C 246 IPCTVYFSFLMDSRNEVWWTI--DGKKP-DDITIDVTINESISHSRTEDETRTQILSIKK-VTSEDLKRSYVCHARSAKG 321 (349)
T ss_dssp CCEEEEECCCTTCCCEEEEES--SCC---------CCCCEEEECCTTCCEEEEECC--------------CEEEEECSSC
T ss_pred EEEEEEEccCCCCCCEEEEEE--CCEEc-cccCCccccccceeeecCCCcEEEEEEEEee-ccHHHcCCcEEEEEEcCCC
Confidence 66664311 012223333321 11100 000000000000000 0 112244444 888888 999999999999
Q ss_pred cCCCC
Q psy14886 369 YGEPS 373 (505)
Q Consensus 369 ~~~~s 373 (505)
....+
T Consensus 322 ~~~~~ 326 (349)
T 4dep_C 322 EVAKA 326 (349)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 87543
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-19 Score=154.72 Aligned_cols=184 Identities=23% Similarity=0.330 Sum_probs=143.4
Q ss_pred CCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee--ecCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 186 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 186 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
.+....+..|+.+.|.|.+.+.|.+ .+.|+++|..+....... .... .....|.|..+..+|.|.|+|.|.|.
T Consensus 24 ~p~~~~~~~G~~v~l~C~~~g~p~p--~i~W~~~g~~l~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 98 (215)
T 3mtr_A 24 GPVAVYTWEGNQVNITCEVFAYPSA--TISWFRDGQLLPSSNYSN---IKIYNTPSASYLEVTPDSENDFGNYNCTAVNR 98 (215)
T ss_dssp CCSEEEECTTCCEEEEEEEEEESCC--EEEEEETTEESSCSSSCS---EEEEEETTEEEEEECCCSGGGCEEEEEEEECS
T ss_pred CCceEEEECCCCEEEEEEEeecCCC--EEEEEECCeECCCCCCcc---EEEecCCCeeEEEEecCChhhCeEEEEEEEEC
Confidence 3455778899999999999998876 567999999886542111 1111 12468999999999999999999999
Q ss_pred CCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCc
Q psy14886 264 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR 342 (505)
Q Consensus 264 ~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 342 (505)
.|.....+.+.+..+|.+|..+.+ .....++.|+|.++. +++.++..|.|+++..+...|......... ....
T Consensus 99 ~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~-----~~~~ 172 (215)
T 3mtr_A 99 IGQESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE-----ASME 172 (215)
T ss_dssp SCEEEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHH-----HHHH
T ss_pred CCceEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccc-----cccc
Confidence 999999999999999999987776 467789999999776 567789999999999988889875432210 0011
Q ss_pred eeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 343 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 343 ~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
..+.+.+ |.+++.|.|+|.|.|.+|.+.+|... .+.|.
T Consensus 173 ~~l~i~~-L~~~~~y~~~~~A~N~~G~s~~S~~~-~v~T~ 210 (215)
T 3mtr_A 173 GIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKTQ 210 (215)
T ss_dssp TEEEEEC-CCTTCEEEEEEEEEESSCBCCCCCCE-EEECC
T ss_pred ccEEECC-CCCCCEEEEEEEEEeCCcccCcccce-eeEec
Confidence 3455555 99999999999999999999988765 45543
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=159.29 Aligned_cols=189 Identities=23% Similarity=0.425 Sum_probs=138.0
Q ss_pred ecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC---CcEEEeeCCCE----EEcCCCCCCCEEE
Q psy14886 85 TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNL----LISPVSRDDSGIY 157 (505)
Q Consensus 85 ~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~---~~~~~~~~~~l----~i~~v~~~d~G~y 157 (505)
..+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|+++|..+... .......++.+ .|.+++..|+|.|
T Consensus 7 ~~~P~i~~~p--~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 7 YQSPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCCEEEECC--CCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred cCCCEEecCC--CceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence 3466666554 4577899999999999999898999999999988653 22222334444 5778899999999
Q ss_pred EEEEEcCCCceee-eEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEe-eecCCCCeEEEEEeCCEEecCCCCCc--ccC
Q psy14886 158 SCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNE--LET 233 (505)
Q Consensus 158 ~C~~~~~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~ 233 (505)
+|.+.|..|.... .+.+.|...++.....+....+..|+.+.|.|.+ .+.|.+ .+.|++++..+....... ...
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~ 162 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP--TLIWIKDGVPLDDLKAMSFGASS 162 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC--EEEEEETTEEECCCCCC---CCC
T ss_pred EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC--eEEEEECCcCCCcccccccccCC
Confidence 9999998876643 4667776544433344556778899999999998 777665 577999999886432111 011
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
.......+.|.|..+..+|.|.|+|.|.|..|....+..+.+..
T Consensus 163 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp SEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred cEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 22233556899999999999999999999999887766555543
|
| >1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-19 Score=164.88 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=159.8
Q ss_pred cCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEe
Q psy14886 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART 318 (505)
Q Consensus 239 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~ 318 (505)
....+.+..+.....+.|+..|.|..|..... ...+...+.+|.++.+......++.|+|+++. +..+.+|.|+++.
T Consensus 56 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~-~~~~~~~~~~p~~l~~~~~~~~si~l~W~~p~--~~~~~~Y~v~~~~ 132 (368)
T 1fnf_A 56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI-SDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSP 132 (368)
T ss_dssp TCCEEECCCCCTTSCEEEEEEEEETTEECCCE-EEEECCCCCCCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEE
T ss_pred CcCEEEECCCCCCCEEEEEEEEEcCCCccCce-eeeecCCCcCCceeEEEEcCCCeEEEEeeCCC--CCCCcEEEEEEEE
Confidence 34577888888888899999999988754322 23333344477888888889999999999884 3668999999998
Q ss_pred CCC-CCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeec
Q psy14886 319 NWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397 (505)
Q Consensus 319 ~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~ 397 (505)
... ..|....... ....+.+.+ |.+++.|.|+|.|.|..|.+.+... ....++.+|.++.+..
T Consensus 133 ~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y~~~V~a~~~~g~s~~~~~------~~~~~~~~P~~l~~~~ 196 (368)
T 1fnf_A 133 VKNEEDVAELSISP---------SDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPLRG------RQKTGLDSPTGIDFSD 196 (368)
T ss_dssp TTCTTCCEEEEECT---------TCCEEEECS-CCTTCEEEEEEEEEETTEECCCEEE------EEECCCCCCEEEEEES
T ss_pred CCCCCccEEEEcCC---------CcceEEecC-CCCCCEEEEEEEEEeCCCCCCCeEe------eecCCCCCCCccEEEE
Confidence 654 3455432211 223444444 9999999999999999998764321 1233455788999988
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcCC-CCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
...+++.|.|+++ .+.+.+|+|+|+..+. ..+....... ....+.|.+|.|++.|.|+|.|+|..|.|++
T Consensus 197 ~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~ 267 (368)
T 1fnf_A 197 ITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPH----SRNSITLTNLTPGTEYVVSIVALNGREESPL 267 (368)
T ss_dssp CCSSEEEEEEECC-----SSCCSEEEEEEECSCCSSCCEEEEEET----TCCEEEEESCCTTCEEEEEEEEEETTEECCC
T ss_pred ccCCEEEEEEeCC-----CCCcCEEEEEEecCCCCCCccEEEeCC----CcCEEEECCCCCCCEEEEEEEEEeCCccCCc
Confidence 8899999999983 2679999999998763 3444333322 3457888999999999999999999999998
Q ss_pred CceEEEeec
Q psy14886 477 SEVVTIWHD 485 (505)
Q Consensus 477 s~~~~~~t~ 485 (505)
+... ..+.
T Consensus 268 ~~~~-~~t~ 275 (368)
T 1fnf_A 268 LIGQ-QSTV 275 (368)
T ss_dssp EEEE-EECC
T ss_pred cccc-ccCC
Confidence 7543 3443
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-21 Score=175.03 Aligned_cols=275 Identities=17% Similarity=0.221 Sum_probs=173.4
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecC-------CCCCCeEEEEECCEEe--cCC-CcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPE-------AAPKPKFVWKKDGNII--GSG-GRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~-------~~p~~~i~W~~~g~~~--~~~-~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
|.+...+ ....+.+|+++.|.|.+. +.|.+.+.|+++|..+ ... .......++.|.|.+++.+|+|.|
T Consensus 19 p~~~~~~--~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 96 (339)
T 3o4o_C 19 RFRGRHY--KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTY 96 (339)
T ss_dssp EEEEECS--CCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEE
T ss_pred HhhCcCc--eEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEE
Confidence 4444443 456789999999999998 8888999999999873 322 222334577899999999999999
Q ss_pred EEEEEcCCCceeeeEEEEEEeCCeeee-eCCCceEEEeeccEEEEEE-----eeecCCCCeEEEEEeCCEEecCCCCCcc
Q psy14886 158 SCTATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRCS-----AHTEELLDVAYIWTHNGVRIGNMDLNEL 231 (505)
Q Consensus 158 ~C~~~~~~g~~~~~~~l~v~~~p~~~~-~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 231 (505)
+|.+.|..|.....+.|.|...+.... .......+..|+.+.|.|. +.+.|.+ .+.|++++..+.....
T Consensus 97 ~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~--~v~W~k~g~~~~~~~~--- 171 (339)
T 3o4o_C 97 VCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV--KIQWYKDSLLLDKDNE--- 171 (339)
T ss_dssp ECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC--CBCCEESSCBCCTTCS---
T ss_pred EEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc--eEEEecCCeeCCCCCc---
Confidence 999999988888888898877654321 1122346788999999999 6666655 4569999887754321
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC----cEEEEEEEEEcCCCC--CCCce----EEEEEeCCeEEEEeec
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVG----KISTKTTVIVEGPPG--LPGGV----QVVEVHKTSATIQWTD 301 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g----~~~~~~~l~v~~~p~--~p~~~----~~~~~~~~~v~l~w~~ 301 (505)
..........|.|..+..+|.|.|+|.|.|..| .....+.|.|...+. +|... ......+..+.|.|..
T Consensus 172 -~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~ 250 (339)
T 3o4o_C 172 -KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKV 250 (339)
T ss_dssp -SEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCE
T ss_pred -eeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEE
Confidence 111112235899999999999999999999887 356677888865431 22111 1112345667777764
Q ss_pred CCCCCCC-CceEEEEEEeCCCC-CeEEeeeccccceeeeecCce------eeEEeeeccCCce-eEEEEEEEcCCCcCCC
Q psy14886 302 GATNGRP-ITHYKIIARTNWNS-TWFNVSEHVIGKEVDRYTGRK------EASIENVLVPWST-YEFKVIAGNELGYGEP 372 (505)
Q Consensus 302 ~~~~~~~-i~~y~v~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~------~~~~~~~L~~~~~-y~~~v~a~n~~G~~~~ 372 (505)
....+.| ...+.+.. .+.. ........+............ .+.+.. +...+. +.|+|.|.|..|....
T Consensus 251 ~~~~g~P~~~~v~W~~--~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~-v~~~d~~G~Y~C~a~N~~G~~~~ 327 (339)
T 3o4o_C 251 FLGTGTPLTTMLWWTA--NDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP-VTREDLHMDFKCVVHNTLSFQTL 327 (339)
T ss_dssp EESSSCCSSCEEEEES--SSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECS-SCCCSCCCCCEEEEEETTEEECC
T ss_pred ECCCCCCCCceEEEEE--CCeecccccccccceecceEEecccCceEEEEEEEEEE-echhhcCccEEEEEEeccCceEE
Confidence 2112333 23233321 1110 000000000000000000111 344444 888887 9999999999998764
Q ss_pred C
Q psy14886 373 S 373 (505)
Q Consensus 373 s 373 (505)
.
T Consensus 328 ~ 328 (339)
T 3o4o_C 328 R 328 (339)
T ss_dssp B
T ss_pred E
Confidence 3
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=162.76 Aligned_cols=257 Identities=13% Similarity=0.098 Sum_probs=165.2
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+|.+... .....+.+|++++|.|.+.+ .+.|++++..+ ......+..|.|.++..+|+|.|+|.+.| |
T Consensus 12 ~P~i~~~--~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g 79 (290)
T 2o26_X 12 PPSIHPA--QSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----EMVENKKNEWIQEKAEATRTGTYTCSNSN--G 79 (290)
T ss_dssp CCEESSC--SSEEEEETTSCEEEEEECTT----EEEEEEECSSS----CEEEECSSEEEETTCCGGGCEEEEEEESS--S
T ss_pred CCEEeCC--CCeEEEcCCCcEEEEECCCC----cEEEecCCcce----eeecCCCceEEEeccCHHhCeEEEEEeeC--C
Confidence 4555543 46678999999999999987 89999998766 22223347799999999999999999998 4
Q ss_pred ceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEE-EeCCEEecCCCCCcccCCeeeecCCeEEE
Q psy14886 167 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW-THNGVRIGNMDLNELETPNINIDGGLLEI 245 (505)
Q Consensus 167 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 245 (505)
. ...+.|.|..+|... ..+....+..|+.+.|.|.+.+ |. ...+.| .++|..+.... .........|.|
T Consensus 80 ~-~~~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~-~~~v~W~~~~g~~l~~~~------~~~~~~~~~L~i 149 (290)
T 2o26_X 80 L-TSSIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQ-VSQYSLIECDGKSLPTDL------TFVPNPKAGITI 149 (290)
T ss_dssp C-EEEEEEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CS-CEEEEEEETTSCCCCTTC------EEEEETTTEEEE
T ss_pred c-cEEEEEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CC-CceEEEEeCCCcCCCCCC------ceeeCCCCCEEE
Confidence 4 666888888776665 4455677889999999999984 43 257779 46776654321 112233468999
Q ss_pred ecCCCCCCE-EEEEEEEecCCcEE-EEEEEEEcCCCCCCCceE-----EEEEeCCeEEEEeecCCCCCCCCc-eEEEEEE
Q psy14886 246 TNASFADAG-EYECVVKSTVGKIS-TKTTVIVEGPPGLPGGVQ-----VVEVHKTSATIQWTDGATNGRPIT-HYKIIAR 317 (505)
Q Consensus 246 ~~~~~~~~g-~y~C~~~n~~g~~~-~~~~l~v~~~p~~p~~~~-----~~~~~~~~v~l~w~~~~~~~~~i~-~y~v~~~ 317 (505)
..+..+|.| .|+|.|.|..+... ..+.+.|...+..+..+. .....+..+.|.|... +.|.. .+.|...
T Consensus 150 ~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~---g~p~p~~i~W~~~ 226 (290)
T 2o26_X 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK---DVSTSVNSMWLKM 226 (290)
T ss_dssp ESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEE---ESSTTCEEEEEEE
T ss_pred ecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEe---cCCcceeEEEecC
Confidence 999999999 99999999865533 347777763221111111 1234566788888743 22222 2443332
Q ss_pred eCCCC--CeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 318 TNWNS--TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 318 ~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
..... .-........ ..........+.+.+ +...+.+.|+|.|.|..|...
T Consensus 227 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~N~~g~~~ 279 (290)
T 2o26_X 227 NPQPQHIAQVKHNSWHR--GDFNYERQETLTISS-ARVDDSGVFMCYANNTFGSAN 279 (290)
T ss_dssp SSSEEECCCEECCEEEE--ETTEEEEEEEEEESS-CCSSSCEEEEEEEECSSCEEE
T ss_pred CCCCccceeeccccccc--CceeeEEEEEEEEcC-CCcccCeEEEEEEeCCCCcEE
Confidence 21100 0000000000 000111223444444 889999999999999998763
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=159.70 Aligned_cols=146 Identities=19% Similarity=0.276 Sum_probs=111.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce--Eee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR--YSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~--~~~ 78 (505)
|.+|++++|.|.+.+ +.+.+.|+|++... ...++.|.|.+++ .+|+|.|+|.+.|..+.. ...
T Consensus 19 v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------------~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~s~~ 83 (184)
T 2gi7_A 19 VPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------------YQDQAVLFIPAMK-RSLAGRYRCSYQNGSLWSLPSDQ 83 (184)
T ss_dssp EETTCCEEEEEECST-TCSEEEEEETTTCC-------------EESSSEEEESSCC-GGGCEEEEEEEEETTEEBCCCCC
T ss_pred ccCCCcEEEEEeCCC-CCCEEEEEECCccc-------------cCcccEEEECcCC-hhhCceEEEEEEcCCCccCCCCC
Confidence 468999999999987 77899999998641 2346799999999 999999999999876532 234
Q ss_pred EEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEE
Q psy14886 79 AQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156 (505)
Q Consensus 79 ~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 156 (505)
+.|.|... +|.+...+ ...+.+|++++|.|.+.+.+ +.+.|+++|..+..... .....+.|.|.+++.+|+|.
T Consensus 84 ~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~-~~~~~~~L~i~~v~~~D~G~ 158 (184)
T 2gi7_A 84 LELVATGVFAKPSLSAQP---GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP-ERWYRASFPIITVTAAHSGT 158 (184)
T ss_dssp EEEEEESSSCCCEEEEEC---CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC-CEEEEESSSEEEETTCCSEE
T ss_pred EEEEecCcCCCCEEEeCC---CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec-CCCceEEEEEccCCccCCeE
Confidence 66777542 33343332 23477999999999987664 69999999987754322 22345679999999999999
Q ss_pred EEEEEEcCCC
Q psy14886 157 YSCTATNVHG 166 (505)
Q Consensus 157 y~C~~~~~~g 166 (505)
|+|.|.|..+
T Consensus 159 Y~C~a~n~~~ 168 (184)
T 2gi7_A 159 YRCYSFSSRD 168 (184)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEEeCCC
Confidence 9999999754
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=166.71 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=121.0
Q ss_pred CCCCCceEEEEEEe---ccCCCeEEEEECCEECcCCCC-----------CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAF---GVPDVTYSWFRNGELLNSETL-----------PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~---~~p~~~~~W~~~~~~l~~~~~-----------~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+. +.+.+.|.|+|++........ .....+|+.+.. .+|.|.+++ .+|
T Consensus 17 v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D 95 (268)
T 3mj6_A 17 VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQ-KAD 95 (268)
T ss_dssp EETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCC-GGG
T ss_pred EecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCC-HhH
Confidence 35899999999997 567788999996543221100 000124555432 789999999 999
Q ss_pred CeEEEEEEEcccCceEe--eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec---CCCCCCeEEEEEC-CEEecC--
Q psy14886 61 PAMYQCRAKNQLKTRYS--SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP---EAAPKPKFVWKKD-GNIIGS-- 132 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~--~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~---~~~p~~~i~W~~~-g~~~~~-- 132 (505)
+|.|+|.+.+..+.... .+.|.|... .+....+.+|++++|.|.+ .+.|.+.+.|+++ +.....
T Consensus 96 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~--------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~ 167 (268)
T 3mj6_A 96 EGIYTCEIRLKNESMVMKKPVELWVLPE--------EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET 167 (268)
T ss_dssp CEEEEEEEEETTCCCEEEEEEEEEEECC--------CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEE
T ss_pred CEEEEEEEEecCCcceEEEEEEEEEecc--------CCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCccee
Confidence 99999999986554433 344544421 1235678999999999999 6778899999993 321110
Q ss_pred -------------------CCcEEE-----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCC
Q psy14886 133 -------------------GGRRKI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 133 -------------------~~~~~~-----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~ 188 (505)
..+..+ ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|...++.....+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~ 247 (268)
T 3mj6_A 168 VLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPT 247 (268)
T ss_dssp EEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---------
T ss_pred EEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCeeeeCCC
Confidence 012222 23457999999999999999999999888888888988665555444444
Q ss_pred ceEEEeecc
Q psy14886 189 KITIAAHRN 197 (505)
Q Consensus 189 ~~~~~~g~~ 197 (505)
...+..++.
T Consensus 248 ~~~~~~~q~ 256 (268)
T 3mj6_A 248 PPTDKGQQG 256 (268)
T ss_dssp ---------
T ss_pred CCCCCccee
Confidence 444444443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=181.69 Aligned_cols=167 Identities=17% Similarity=0.183 Sum_probs=130.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~~~~~~~~~~ 79 (505)
+.+|++++|.|.+.|.|.+.+.|++++..+..... .......++|.|.+++ .+|+| .|+|.|.|..|.....+
T Consensus 170 v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~-~~D~G~~Y~C~a~n~~g~~~~~~ 243 (347)
T 2ifg_A 170 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-----KSGGLPSLGLTLANVT-SDLNRKNVTCWAENDVGRAEVSV 243 (347)
T ss_dssp CBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-----CCCCSSEEEEEEESCC-STTTTCCEEECCEETTEECCEEE
T ss_pred EeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc-----cceecccceEEEeeCC-hHHCCCeEEEEEEcCCCCEEEEE
Confidence 56899999999999999999999999876542110 0011234689999999 99999 99999999888777777
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe----------eCCCEEEcCC
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPV 149 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----------~~~~l~i~~v 149 (505)
.|.|.. +|.+.. ....+|+.++|.|.+.|.|.|.+.|+++|..+......... ..++|.|.++
T Consensus 244 ~l~V~~-~P~i~~------~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 316 (347)
T 2ifg_A 244 QVNVSF-PASVQL------HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 316 (347)
T ss_dssp CCCCBE-EEEEEE------CCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSC
T ss_pred EEEEcC-CCeeee------ccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCC
Confidence 777764 454311 12457899999999999999999999999998755443321 1345999999
Q ss_pred CCCCCEEEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 150 SRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
..+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus 317 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 317 THVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred CcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 9999999999999999998888888875543
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=154.65 Aligned_cols=162 Identities=21% Similarity=0.345 Sum_probs=130.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce-eeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~-~~~~~l~ 175 (505)
....+.+|+++.|.|.+.+.|.+.+.|++++..+... ....|.|.++...|+|.|+|.+.+..+.. ...+.|.
T Consensus 26 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 99 (218)
T 3k0w_A 26 ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99 (218)
T ss_dssp CCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred CCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence 4567899999999999999999999999999988653 24579999999999999999999987765 3447787
Q ss_pred EEeCC--------------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC
Q psy14886 176 VLHGP--------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241 (505)
Q Consensus 176 v~~~p--------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (505)
|...+ +.+...+....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ...
T Consensus 100 V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~--~v~W~~~~~~~~~~------------~~~ 165 (218)
T 3k0w_A 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP--HYQWFKNELPLTHE------------TKK 165 (218)
T ss_dssp EECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC--EEEEEETTEECTTC------------CSS
T ss_pred EEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC--eEEEEECCEECCCC------------CCC
Confidence 76653 233334556778899999999999887765 57799999887653 235
Q ss_pred eEEEecCCCCCCEEEEEEEEecCCc-EEEEEEEEEcCC
Q psy14886 242 LLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVEGP 278 (505)
Q Consensus 242 ~l~i~~~~~~~~g~y~C~~~n~~g~-~~~~~~l~v~~~ 278 (505)
.|.|..+..+|.|.|+|.|.|..|. .+..+.|.|...
T Consensus 166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence 7999999999999999999998887 556677877654
|
| >1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-19 Score=158.45 Aligned_cols=188 Identities=16% Similarity=0.146 Sum_probs=138.9
Q ss_pred EEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCC-CCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 274 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW-NSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 274 ~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
....+|.+|.++.+.....+++.|+|+++. +++.+|.|+|+... ...|...... .....+.+.+ |.
T Consensus 10 ~~~~~p~~P~~l~~~~~~~~sv~l~W~~~~---~~~~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~~i~~-L~ 76 (283)
T 1tdq_A 10 GGIPVIDGPTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFRLQ---------PPLSQYSVQA-LR 76 (283)
T ss_dssp --CCSSCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSSCCCEEEEEC---------TTCSEEEECS-CC
T ss_pred ccccCCCCCcEEEEEecCCCeEEEEEECCC---CceeEEEEEEEEecCCCCcEEEEeC---------CCCCEEEecC-CC
Confidence 345688899999999999999999999886 56889999997654 3445332211 1233444544 99
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~ 432 (505)
+++.|.|+|.|.|..|.+.+... .+ ..++.+|.++.+...+.+++.|.|+++. +.+.+|.|+|+..++.
T Consensus 77 p~t~Y~~~V~a~~~~g~s~~~~~--~~----~t~p~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~ 145 (283)
T 1tdq_A 77 PGSRYEVSISAVRGTNESDASST--QF----TTEIDAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLAGE 145 (283)
T ss_dssp TTCEEEEEEEEEETTEECCCEEE--EE----ECCCCCCEEEEEEEECSSCEEEEEECCS-----SCCSEEEEEEEETTCC
T ss_pred CCCEEEEEEEEECCCCCCCCeeE--EE----ECCCCCCCceEEEecCCCeEEEEecCCC-----CCccEEEEEEEeCCCC
Confidence 99999999999999888753221 22 2355678999998888999999999842 5799999999998876
Q ss_pred CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
.|....+... ......+.|.+|.|++.|.|+|.|+|..|.|+++.. ...+.|+
T Consensus 146 ~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~-~~~t~~~ 198 (283)
T 1tdq_A 146 QYHEVLVPKG-IGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM-NARTELD 198 (283)
T ss_dssp CCEEEEEECC-SSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEEE-EEECCCC
T ss_pred cceEEECCCC-CcccceEEEecCCCCCEEEEEEEEEeCCCCCcceEE-EecCCCC
Confidence 6654444321 011578899999999999999999999999876543 3444433
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=171.52 Aligned_cols=174 Identities=16% Similarity=0.275 Sum_probs=129.9
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCC-CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS- 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~-~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~- 77 (505)
+..|+.+.|.|.+. +.|.+.+.|++++..+..... .....+.+.. .+.|.|..++ .+|+|.|+|.|.|..+....
T Consensus 129 ~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~s~l~i~~~~-~~d~g~Y~C~a~n~~~~~~~~ 206 (313)
T 4fqp_A 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV-TSLWILVPSS-QVDGKNVTCKVEHESFEKPQL 206 (313)
T ss_dssp CCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEE-EEEEEECCCG-GGTTCEEEEEEECTTSSSCEE
T ss_pred eecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccccccc-ceeeeecccc-cccCeeEEEEEEccCcCccce
Confidence 35688889999875 688999999999876642210 0011222222 2468899999 99999999999997765433
Q ss_pred -eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCE
Q psy14886 78 -SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155 (505)
Q Consensus 78 -~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G 155 (505)
.+.|.|.. +|.+.+.+. ....+.+|+.++|.|.+.|.|.| .+.|+++|..+... ....+++|.|.++..+|+|
T Consensus 207 ~~~~l~V~~-~P~v~~~~~-~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~---~~~~~~~L~i~~v~~~d~G 281 (313)
T 4fqp_A 207 LTVNLTVYY-PPEVSISGY-DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF---AVAQGAQLLIRPVDKPINT 281 (313)
T ss_dssp EEEECCBCE-EEEEEEECC-CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT---EEEETTEEEECCCSSCCEE
T ss_pred eeeeccccc-CCccccccc-cceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc---eEEeCCEEEECcCChhhCE
Confidence 45555553 565544432 33456788999999999999988 79999999887543 2344678999999999999
Q ss_pred EEEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 156 IYSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
.|+|.|.|..|.....+.|.|.+.|+
T Consensus 282 ~Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 282 TLICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred EEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 99999999999999999999987765
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=152.31 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=115.1
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+.+|++++|.|.+.+.| .+.+.|+|++..+... ...+.+.+++ .+|+|.|+|.+.+... ...+
T Consensus 16 v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-------------~~~~~~~~~~-~~d~G~Y~C~~~~~~~--s~~~ 79 (170)
T 3ry4_A 16 VLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------------TQPSYRFKAN-NNDSGEYTCQTGQTSL--SDPV 79 (170)
T ss_dssp EETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-------------CSSEEEEECC-GGGCEEEEEEETTSBC--CCCE
T ss_pred EECCCcEEEEEEecCCCCcceEEEEECCeEcccC-------------ccceEEEecc-cccCeEEEEEEeCCCc--eEeE
Confidence 35899999999998876 6899999999988732 3457788999 9999999999986433 3356
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
.|.|.. ++.+... +...+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ...++.|.|.++..+|+|.|+
T Consensus 80 ~l~v~~-~~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-----~~~~~~L~i~~v~~~d~G~Y~ 150 (170)
T 3ry4_A 80 HLTVLF-EWLVLQT---PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-----SHLDPTFSIPQANHSHSGDYH 150 (170)
T ss_dssp EEEEEC-CSEEEEC---SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-----ESSCCEEEESSCCGGGCEEEE
T ss_pred EEEEEC-CceEecC---CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-----cCCCCeEEEEeccccCCEEEE
Confidence 777774 3322222 23457899999999999 4556689999999987642 123557999999999999999
Q ss_pred EEEEcCCCce-eeeEEEEE
Q psy14886 159 CTATNVHGMD-ESKGRLIV 176 (505)
Q Consensus 159 C~~~~~~g~~-~~~~~l~v 176 (505)
|.|.|..|.. +..+.|.|
T Consensus 151 C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 151 CTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEETTEEEECCCEEEEE
T ss_pred EEEEeCcCccccccEEEEE
Confidence 9999988863 33355554
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=150.52 Aligned_cols=172 Identities=18% Similarity=0.298 Sum_probs=130.8
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEE-CCEEec-CCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCC-ce
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKK-DGNIIG-SGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHG-MD 168 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~-~g~~~~-~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g-~~ 168 (505)
....+.+|+++.|.|.+.+.+ .+.+.|++ +|..+. ...++.... ...|.|.++..+|+|.|+|.+.+..+ ..
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 89 (191)
T 1epf_A 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS 89 (191)
T ss_dssp SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred CCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcce
Confidence 446789999999999999876 78999999 888776 344444432 34699999999999999999999884 44
Q ss_pred eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecC
Q psy14886 169 ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248 (505)
Q Consensus 169 ~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 248 (505)
...+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+..... .......++.|.|..+
T Consensus 90 ~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~v~W~~~~~~~~~~~~----~~~~~~~~~~L~i~~~ 162 (191)
T 1epf_A 90 EATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPP--TIIWKHKGRDVILKKD----VRFIVLSNNYLQIRGI 162 (191)
T ss_dssp EEEEEEEEECCSEEEE-CCSSEECCTTSCEEECCEEECSSCC--EEEEEETTEEGGGGCC----TTEEECTTSCEEETTC
T ss_pred EEEEEEEeecCceEec-CCCcEeecCCCeEEEEEEECCCCCC--EEEEEECCEEeeccCC----ceEEEecCCeEEECCC
Confidence 5557788876666544 3556677899999999999988765 5779999988754221 1222234568999999
Q ss_pred CCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 249 SFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 249 ~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
..+|.|.|+|.|.|..+.......+.+
T Consensus 163 ~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 163 KKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp CGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred ChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 999999999999998876554444433
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=151.82 Aligned_cols=170 Identities=24% Similarity=0.338 Sum_probs=130.6
Q ss_pred ceEEeeCCCeEEEEee-cCCCCC-CeEEEEECCEEec--CCCc-EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 97 SETYAGEGGNVTIFCN-PEAAPK-PKFVWKKDGNIIG--SGGR-RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~-~~~~p~-~~i~W~~~g~~~~--~~~~-~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
....+.+|+.+.|.|. +.+.|. +.+.|++++..+. ...+ .....+++|.|.++..+|+|.|+|.+.+..+.....
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~ 95 (201)
T 3s97_C 16 PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF 95 (201)
T ss_dssp CCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred ceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchh
Confidence 5577999999999999 888888 8999999987764 2222 233346789999999999999999999876555442
Q ss_pred ---EEEEEEe-------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC
Q psy14886 172 ---GRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241 (505)
Q Consensus 172 ---~~l~v~~-------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (505)
..+.+.. +|.+... .....+..|+.+.|.|.+.+.|.+ .+.|++++..+... ......+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p--~v~W~~~~~~~~~~-------~~~~~~~~ 165 (201)
T 3s97_C 96 SKFIPLIPIPERTTKPYPADIVVQ-FKDVYALMGQNVTLECFALGNPVP--DIRWRKVLEPMPST-------AEISTSGA 165 (201)
T ss_dssp CCCEEEEEECCSSCCCEEEEEEEE-CCCEEEETTCCEEEEEEEEEESCC--EEEEEETTBCCCTT-------CEEETTTT
T ss_pred hcccceeeccccccCCCCCceEec-CCceEEecCCcEEEEEEccCCCCC--ceEEEeCCCcCCCc-------eeecCCCC
Confidence 3333321 2333333 346778899999999999998765 56799998866432 33444567
Q ss_pred eEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 242 ~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
.|.|..+..+|.|.|+|.|.|..|.....+.|.|+
T Consensus 166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 89999999999999999999999999888888875
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=156.70 Aligned_cols=146 Identities=16% Similarity=0.340 Sum_probs=105.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+++|++++|.|.+ |.+.|.|+|+|..+... ...+++|.|.+++ .+|+|.|+|.+.+.. ...+.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~----------~~~~~~L~i~~v~-~~DsG~Y~C~~~~~~---s~~~~ 77 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL----------TEDKKKWNLGSNA-KDPRGMYQCKGSQNK---SKPLQ 77 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE----------ESSCCCEEEEEGG-GCCEEEEEEESSSSC---CCCEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC----------CCCCCeEEeCCCC-cCCCEEEEEEecCCC---CeeEE
Confidence 4689999999998 78899999999987621 1135689999999 999999999975422 11234
Q ss_pred EEEEe--------------------------c----CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe
Q psy14886 81 LRVLT--------------------------L----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 130 (505)
Q Consensus 81 l~v~~--------------------------~----~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~ 130 (505)
|.|.. . ++.+... +.....+|++++|.|. +.|.+.+.|+++|..+
T Consensus 78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l 152 (204)
T 1sy6_A 78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT---PYKVSISGTTVILTCP--QYPGSEILWQHNDKNI 152 (204)
T ss_dssp EEEEC------------------------------------CC---CCEEEEETTEEEEECS--CCCSSCEEEEETTEEE
T ss_pred EEEEEeccccccccccccccccccccccccccccccccceecC---CceeeecCCcEEEEcC--CCCCCceEEEECCEEC
Confidence 44430 0 1111111 1222338999999999 6788899999999988
Q ss_pred cCC--CcEEEeeCCCEEEcCC-CCCCCEEEEEEEEcCCCce
Q psy14886 131 GSG--GRRKIFENGNLLISPV-SRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 131 ~~~--~~~~~~~~~~l~i~~v-~~~d~G~y~C~~~~~~g~~ 168 (505)
... .......+++|.|.++ ..+|+|.|+|.|.|..|..
T Consensus 153 ~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~ 193 (204)
T 1sy6_A 153 GGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193 (204)
T ss_dssp SCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGG
T ss_pred CCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCc
Confidence 643 2223335788999999 9999999999999999863
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=162.45 Aligned_cols=250 Identities=15% Similarity=0.136 Sum_probs=161.0
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE-eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
+....+.+|++++|.|.+.+ .+.|++++.... .... .....|.|.+++.+|+|.|+|.+.+..+.....+.|
T Consensus 11 ~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 83 (289)
T 3ejj_X 11 GPELVVEPGETVTLRCVSNG----SVEWDGPISPYW---TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHL 83 (289)
T ss_dssp SSEEEECTTCCEEEEEECSS----CCEEECSCSSSS---EECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEE
T ss_pred CceEEECCCCCEEEEEEeCC----cEEEccCCCceE---EEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEE
Confidence 46678999999999999987 499998764321 1111 123569999999999999999999988887888889
Q ss_pred EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe-CCEEecCCCCCcccCCeeeecCCeEEEecCCCCCC
Q psy14886 175 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINIDGGLLEITNASFADA 253 (505)
Q Consensus 175 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 253 (505)
.|..+|......+....+..|+.+.|.|.+.+.+.+. .+.|++ ++..+.... ......+..|.|..+..+|.
T Consensus 84 ~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~d~ 156 (289)
T 3ejj_X 84 YVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD-SVSLMREGGRQVLRKT------VYFFSPWRGFIIRKAKVLDS 156 (289)
T ss_dssp EECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGG-SEEEEEGGGEECCTTC------CEEEETTTEEEESSCCGGGC
T ss_pred EEeCCCcceecccceEEEecCCceEeEEEccCCCcce-EEEEEecCCeecCCCc------cEEECCCCCEEEeecccccC
Confidence 9987776555556777889999999999998865432 366975 555554321 22233456899999999999
Q ss_pred EEEEEEEE-ecCCcEEEEEEEEEcCCCCCCCceEE-----EEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEe
Q psy14886 254 GEYECVVK-STVGKISTKTTVIVEGPPGLPGGVQV-----VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327 (505)
Q Consensus 254 g~y~C~~~-n~~g~~~~~~~l~v~~~p~~p~~~~~-----~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~ 327 (505)
|.|+|.+. +..+..+..+.|.|...+..+..+.. ....+..+.|.|... +..+...+.+. ..
T Consensus 157 G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~i~W~----------~~ 224 (289)
T 3ejj_X 157 NTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSAT--NAEVGFNVILK----------RG 224 (289)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEE--ESSSCCEEEEE----------ET
T ss_pred EEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeC--CCCCceEEEEE----------EC
Confidence 99999998 44455566778888743322211221 113466778888742 11222333332 22
Q ss_pred eecccccee-----eeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCC
Q psy14886 328 SEHVIGKEV-----DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 372 (505)
Q Consensus 328 ~~~~~~~~~-----~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~ 372 (505)
...+..... ........+.+.+ +...+.+.|+|.|.|..|....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~~ 273 (289)
T 3ejj_X 225 DTKLEIPLNSDFQDNYYKKVRALSLNA-VDFQDAGIYSCVASNDVGTRTA 273 (289)
T ss_dssp TEECCCCEEEEECSSSEEEEEEEEESS-CCSSSCEEEEEEEECSSCEEEE
T ss_pred CEEeeccCCcccccceEEeeEEEEEEe-ecccCCEEEEEEEEcCCCCccc
Confidence 111110000 0001123444444 8999999999999999998753
|
| >3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-19 Score=158.18 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=139.6
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCC-CCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW-NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
+|.+|.++.+...+.+++.|+|+++ ++.+.+|.|+|+... ...|....... ....+.+. +|.+++.
T Consensus 20 ~p~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~~~~~~~~~---------~~~~~~i~-~L~p~t~ 86 (290)
T 3r8q_A 20 AIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTGPMKEINLAP---------DSSSVVVS-GLMVATK 86 (290)
T ss_dssp CCCCCEEEEEEEECSSCEEEEEECC---SSCCCEEEEEEEESSSSSCCEEEEECT---------TCCEEEEC-SCCSSCE
T ss_pred CCCCCCceEEEECCCCEEEEEEeCC---CCCeeEEEEEEEeCCCCCceEEEEcCC---------CccEEEeC-CCCCCCE
Confidence 5678889999999999999999987 347899999998876 35565543221 22344444 4999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEE
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS 436 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~ 436 (505)
|.|+|.|.|..|.+.++.. .+.+.+.. .+|.++.+.....+++.|.|+++ ++.+.+|.|+|+..+...+..
T Consensus 87 Y~~~V~a~~~~g~s~~s~~--~~~t~~~~--~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~ 157 (290)
T 3r8q_A 87 YEVSVYALKDTLTSRPAQG--VVTTLENV--SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPIQ 157 (290)
T ss_dssp EEEEEEEEETTEECCCEEE--EEECCCCC--CCCEEEEEEEECSSCEEEEEECC-----SCCCCEEEEEEEESSSCCCEE
T ss_pred EEEEEEEEeCCCCCCCcce--eEecCCCC--CCCceeEEEEcCCCeEEEEEeCC-----CCcccEEEEEEEECCCCcceE
Confidence 9999999999999987643 34444332 58899999988899999999983 467999999999987555443
Q ss_pred EEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecceE
Q psy14886 437 ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPLV 488 (505)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~~ 488 (505)
..... ....+.|.+|.|++.|.|+|.|+|..|.|+++. +...|.|..
T Consensus 158 ~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~t~p~~ 204 (290)
T 3r8q_A 158 RTIKP----DVRSYTITGLQPGTDYKIYLYTLNDNARSSPVV-IDASTAIDA 204 (290)
T ss_dssp EEECT----TCSEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECCCCC
T ss_pred EecCC----CccEEEECCCCCCCEEEEEEEEEeCCcccCCEE-EEecCCCCC
Confidence 33322 345688999999999999999999999988754 334444433
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=155.65 Aligned_cols=167 Identities=14% Similarity=0.057 Sum_probs=114.9
Q ss_pred EEeeCCCeEEEEee---cCCCCCCeEEEEECCEEecC-----------------CCcEEEeeC---CCEEEcCCCCCCCE
Q psy14886 99 TYAGEGGNVTIFCN---PEAAPKPKFVWKKDGNIIGS-----------------GGRRKIFEN---GNLLISPVSRDDSG 155 (505)
Q Consensus 99 ~~v~~g~~v~l~C~---~~~~p~~~i~W~~~g~~~~~-----------------~~~~~~~~~---~~l~i~~v~~~d~G 155 (505)
+.+..|++++|.|. +.+.|.+.|.|+|+|..+.. ..++.+... ..|.|.+++.+|+|
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 46789999999994 67788999999997642210 111222211 25999999999999
Q ss_pred EEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCe
Q psy14886 156 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 235 (505)
.|+|.|.|..|.....+.|.|..+|.+. ..+....+..|+.+.|.|.+.|.|.| .+.|.+++..+...... .. ..
T Consensus 83 ~Y~C~a~n~~g~~~~~~~l~V~~p~~~~-~~~~~~~v~~g~~~~l~C~~~G~P~P--~v~W~~~~~~~~~~~~~-~~-r~ 157 (203)
T 4fa8_A 83 NYLCRMKLGETEVTKQEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFPHP--HVQWLMPEGVEPAPTAA-NG-GV 157 (203)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEEEEE-EEEEECCSSCSCCEEEEEEEEEESCC--EEEECCC--------------CC
T ss_pred EEEEEEEcCCCcEEEEEEEEecCCceee-ecceeEEEcCCCEEEEEEEcCCCCCC--EEEEEECCeeecCcccc-cc-eE
Confidence 9999999999998888889886655443 33445567789999999999999877 45698765443221100 00 11
Q ss_pred eeecCCeE---EEecCCCCCCEEEEEEEEecCCcEEEE
Q psy14886 236 INIDGGLL---EITNASFADAGEYECVVKSTVGKISTK 270 (505)
Q Consensus 236 ~~~~~~~l---~i~~~~~~~~g~y~C~~~n~~g~~~~~ 270 (505)
....++.+ .+..+..+|.|.|+|.|.|..|.....
T Consensus 158 ~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 158 MKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp EECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred EEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 11223333 446788999999999999999987653
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=154.46 Aligned_cols=172 Identities=19% Similarity=0.311 Sum_probs=130.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC----CCeEEEEE----------------CCEEecC-----CCcEEEee------CCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP----KPKFVWKK----------------DGNIIGS-----GGRRKIFE------NGNLL 145 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~----------------~g~~~~~-----~~~~~~~~------~~~l~ 145 (505)
..+.+.+|+++.|.|.+.+.+ .+.+.|++ ++..+.. ..+..+.. +.+|.
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 87 (214)
T 3jz7_A 8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN 87 (214)
T ss_dssp EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence 556789999999999998876 46999988 4444432 34555443 45799
Q ss_pred EcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEe-eecCCCCeEEEEEeCCE--E
Q psy14886 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGV--R 222 (505)
Q Consensus 146 i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~w~~~~~--~ 222 (505)
|.+++.+|+|.|+|.+.+..|.....+.|.|..+|...... ....+..|+.+.|.|.+ .+.|.+ .+.|++++. .
T Consensus 88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~--~v~W~~~~~~~~ 164 (214)
T 3jz7_A 88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF-VDGSEEIGNDFKLKCEPKEGSLPL--QFEWQKLSDSQT 164 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEE-EESCCBTTCCEEEEEECSBCCSSC--EEEEEECSTTCC
T ss_pred EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceee-eecceecCCcEEEEecCCCCCCCC--EEEEEECCCCCc
Confidence 99999999999999999998888888899998777654332 22236789999999999 666654 667998543 2
Q ss_pred ecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCC
Q psy14886 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~ 278 (505)
+... ......+..|.|..+..+|.|.|+|.|.|..|.....+.|.|..|
T Consensus 165 ~~~~-------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 213 (214)
T 3jz7_A 165 MPTP-------WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213 (214)
T ss_dssp CCGG-------GGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred cCcc-------ceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence 2211 122234568999999999999999999999999999988888744
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=147.80 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=122.3
Q ss_pred eEEeeCCCeEEEEeecCCCCCCe-EEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~-i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
...+.+|++++|.|.+.+.|.+. +.|+++|..+.. ..+.|.|.+++.+|+|.|+|.+.|..+ ...+.|.|
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V 86 (175)
T 1fnl_A 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEV 86 (175)
T ss_dssp CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEE
T ss_pred ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-------CceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEE
Confidence 34688999999999999987765 889999988753 245799999999999999999988544 44567777
Q ss_pred EeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEE
Q psy14886 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256 (505)
Q Consensus 177 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 256 (505)
..++.... .....+..|+.+.|.|.+.+.+++ ..+.|++++..+.. ......|.|..+..+|.|.|
T Consensus 87 ~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~k~g~~~~~-----------~~~~~~L~i~~v~~~d~G~Y 152 (175)
T 1fnl_A 87 HIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGKDRKY-----------FHHNSDFHIPKATLKDSGSY 152 (175)
T ss_dssp ECSSEEEE--CSCSEEETTCCEEEEEEECTTCCC-EEEEEEETTEEEEE-----------EEECCCEEESSCCGGGCEEE
T ss_pred eCCCceee--CCCceecCCCCEEEEEEcCCCCCc-eEEEEEECCeEccC-----------CCCCCEEEEcccChhhCeEE
Confidence 65544433 234667899999999999877654 57889999988742 12357899999999999999
Q ss_pred EEEEEecCCc-EEEEEEEEEcC
Q psy14886 257 ECVVKSTVGK-ISTKTTVIVEG 277 (505)
Q Consensus 257 ~C~~~n~~g~-~~~~~~l~v~~ 277 (505)
+|.|.|..|. .+..+.|.|.+
T Consensus 153 ~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 153 FCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEEcCCCCccCccEEEEEeC
Confidence 9999997664 44556676654
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=154.80 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=109.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce--Eee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR--YSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~--~~~ 78 (505)
|.+|++++|.|.+.+ +...+.|+|++..+..... .......+++|.|.+++ .+|+|.|+|.+.+..+.. ...
T Consensus 15 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~----~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~~~~~~~~~s~~ 88 (188)
T 1oll_A 15 VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP----KPPERINKVKFYIPDMN-SRMAGQYSCIYRVGELWSEPSNL 88 (188)
T ss_dssp EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC----SSCTTCCEEEEEESSCC-GGGCEEEEEEEEETTEECCCCCC
T ss_pred CCCCCCEEEEEecCC-CCCEEEEEECCCccccccc----ccCCCcceeEEEeCcCC-cccCeEEEEEecCCCCCCCCCCc
Confidence 468999999999975 4578999999987642100 00011134689999999 999999999998764422 334
Q ss_pred EEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEE
Q psy14886 79 AQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156 (505)
Q Consensus 79 ~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 156 (505)
+.|.|... +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+... ......++.|.|.+++.+|+|.
T Consensus 89 ~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~-~~~~~~~~~L~I~~v~~~d~G~ 163 (188)
T 1oll_A 89 LDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGT 163 (188)
T ss_dssp EEEEEESCSCCCEEEEES---CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEE-EEECSSEEEEEEEECCGGGCEE
T ss_pred eEEEecccCCCCeEEECC---CCccccCCEEEEEEEcCCC-CCEEEEEECCcccccc-ccCCCceeEEEECCCCcCCCcE
Confidence 66777642 34443322 2457899999999998764 5699999998765431 1111234579999999999999
Q ss_pred EEEEEEcCC
Q psy14886 157 YSCTATNVH 165 (505)
Q Consensus 157 y~C~~~~~~ 165 (505)
|+|.|.|..
T Consensus 164 Y~C~a~n~~ 172 (188)
T 1oll_A 164 YRCFGSYNN 172 (188)
T ss_dssp EEEECEEET
T ss_pred EEEEEEcCC
Confidence 999998764
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=161.28 Aligned_cols=262 Identities=16% Similarity=0.194 Sum_probs=156.8
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC-
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH- 165 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~- 165 (505)
+|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|+|..+... .......+.|.|.+++.+|+|.|+|.|.+..
T Consensus 24 ~P~i~~~p~---~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~ 98 (316)
T 3vh8_G 24 KPFLSAWPS---AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI-FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS 98 (316)
T ss_dssp CCEEEEESC---SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH-HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred CCEeeccCC---CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee-ecCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence 565655542 357899999999999887 6799999999765431 1111235679999999999999999998643
Q ss_pred ----CceeeeEEEEEEeCC--eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeec
Q psy14886 166 ----GMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239 (505)
Q Consensus 166 ----g~~~~~~~l~v~~~p--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 239 (505)
+.....+.|.|...+ +.+...+. ..+..|+.++|.|.+.+. . ..+.|++++..+....... .......
T Consensus 99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~--~~~~w~k~g~~~~~~~~~~--~~~~~~~ 172 (316)
T 3vh8_G 99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPG-PLVKSGERVILQCWSDIM-F--EHFFLHKEGISKDPSRLVG--QIHDGVS 172 (316)
T ss_dssp SSSBCCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEEESSC-C--SEEEEEETTCCSCCEEEEC--EEETTEE
T ss_pred CcceecCCCcEEEEEecCCCCCeEEecCC-CccCCCCeEEEEEcCCCC-C--cEEEEEECCCccccceeee--eecCCCc
Confidence 223344677776532 22222222 337889999999998533 2 3677999887653311000 0000113
Q ss_pred CCeEEEecCCCCCCEEEEEEEEecCCc-----EEEEEEEEEcCCCCCCCceEE----EEEeCCeEEEEeecCCCCCCCCc
Q psy14886 240 GGLLEITNASFADAGEYECVVKSTVGK-----ISTKTTVIVEGPPGLPGGVQV----VEVHKTSATIQWTDGATNGRPIT 310 (505)
Q Consensus 240 ~~~l~i~~~~~~~~g~y~C~~~n~~g~-----~~~~~~l~v~~~p~~p~~~~~----~~~~~~~v~l~w~~~~~~~~~i~ 310 (505)
...|.|..+..+|.|.|+|.|.|..|. .+..+.|.|...+.+|. +.. ....+..++|.|.... +..
T Consensus 173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~-i~~~~~~~v~~G~~v~L~C~~~~----~~~ 247 (316)
T 3vh8_G 173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS-LSAQPGPKVQAGESVTLSCSSRS----SYD 247 (316)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCE-EEEESCSCCCTTSCCEEEEEESS----CCS
T ss_pred eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCe-EEeCCCCeecCCCcEEEEEECCC----CCc
Confidence 457999999999999999999998874 24556777766544442 222 1235678999998531 223
Q ss_pred eEEEEEEeCCCCCeEEeeeccccceeeeecC-c-eeeEEeeeccCCceeEEEEEEEcCCCcCCCCCC
Q psy14886 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTG-R-KEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375 (505)
Q Consensus 311 ~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~-~-~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~ 375 (505)
.|.+.. .+.......... ....+ . ..+.+.. +. +.+.|+|.|.|..+...+|..
T Consensus 248 ~~~W~k--~g~~~~~~~~~~------~~~~~~~~~~L~i~~-v~--D~G~Y~C~a~n~~~~~~~s~~ 303 (316)
T 3vh8_G 248 MYHLSR--EGGAHERRLPAV------RKVNRTFQADFPLGP-AT--HGGTYRCFGSFRHSPYEWSDP 303 (316)
T ss_dssp EEEEEE--TTSSCCEEEECE------ECTTSCEEEEEECC--------CEEEEEEEBTTBTTEECCC
T ss_pred EEEEEE--CCCcCCCceece------eccCCceeEEEEcCC-cC--CCEEEEEEeecCCCchhccCC
Confidence 344332 222111110000 00001 1 2333333 66 899999999998876433333
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=148.60 Aligned_cols=169 Identities=24% Similarity=0.288 Sum_probs=126.6
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+|.+...+ ....+.+|++++|.|.+.+.+.+ .+.|++++..+... ++.|.|.+++.+|+|.|+|.+.+..
T Consensus 4 ~P~i~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~~~~ 74 (176)
T 1f2q_A 4 KPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFEDSGEYKCQHQQVN 74 (176)
T ss_dssp CCCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------SSEEEECSCCGGGCEEEEEECTTSS
T ss_pred CCEEEcCC--CCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------ceEEEEeccceecCEEEEEEcCCcc
Confidence 44554444 33568999999999999988775 79999999887642 5679999999999999999998755
Q ss_pred CceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEE
Q psy14886 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI 245 (505)
Q Consensus 166 g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 245 (505)
+ ...+.|.|..++..... ....+..|+.+.|.|.+.+.++ ...+.|+++|..+... ..+..|.|
T Consensus 75 ~--s~~~~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~-----------~~~~~L~i 138 (176)
T 1f2q_A 75 E--SEPVYLEVFSDWLLLQA--SAEVVMEGQPLFLRCHGWRNWD-VYKVIYYKDGEALKYW-----------YENHNISI 138 (176)
T ss_dssp C--CCCEEEEEECSSEEEEE--SCSEEETTSCEEEEEEEGGGCC-EEEEEEEETTEECCSC-----------CCSSEEEE
T ss_pred c--cccEEEEEeCcceeecC--CcceeeCCCCEEEEEEecCCCC-ceEEEEEECCEEEeee-----------cCCCeEEE
Confidence 4 34566777644443332 3356789999999999965443 3578899999887432 13568999
Q ss_pred ecCCCCCCEEEEEEEEecCCc-EEEEEEEEEcCCCC
Q psy14886 246 TNASFADAGEYECVVKSTVGK-ISTKTTVIVEGPPG 280 (505)
Q Consensus 246 ~~~~~~~~g~y~C~~~n~~g~-~~~~~~l~v~~~p~ 280 (505)
..+..+|.|.|+|.|.|..+. .+..+.|.|..+|.
T Consensus 139 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 139 TNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred CCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999999999999999997544 44568888887764
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=155.49 Aligned_cols=170 Identities=14% Similarity=0.169 Sum_probs=111.5
Q ss_pred CCCCceEEEEEEeccCC---CeEEEEECCEE-----------CcCCCCCCCCCCcEEEE-------CCeEEEEcCCCCCC
Q psy14886 2 DNQADLTWTCEAFGVPD---VTYSWFRNGEL-----------LNSETLPLEDQDRYFIQ-------DNVLTIRYLNPERD 60 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~---~~~~W~~~~~~-----------l~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~~d 60 (505)
.+|++++|.|.+.+.+. ..|.|+|++.. +..... .....|.... +.+|.|.+++ .+|
T Consensus 17 ~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~-~~D 94 (226)
T 4f80_A 17 MVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQS-APYRGRTSILRDGITAGKAALRIHNVT-ASD 94 (226)
T ss_dssp ETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSC-TTTTTTEEEECTTGGGTEEEEEESSCC-GGG
T ss_pred EcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccC-ccccceEEEecccccCCeEEEEEeeCc-hHH
Confidence 57999999999986543 47999997532 211111 1122344332 2479999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEE-ecCCC-cEE
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNI-IGSGG-RRK 137 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~-~~~~~-~~~ 137 (505)
+|.|+|.|.|..+.....+.+.+.. +. ... .....+.+|+.+.|.|.+.+ .|.|.|+|++++.. +.... ...
T Consensus 95 ~G~Y~C~a~n~~~~~~~~v~~~~~~--~~-~~~--~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~ 169 (226)
T 4f80_A 95 SGKYLCYFQDGDFYEKALVELKVAA--LG-SDL--HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVV 169 (226)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEB--CC-CCC--EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCE
T ss_pred CeeEEEEEECCCcEEEEEEEEeecc--ce-ecc--cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEE
Confidence 9999999999776655444444432 21 111 24466889999999999988 48999999996543 33221 122
Q ss_pred EeeCCC---EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 138 IFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 138 ~~~~~~---l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
...++. +.+..++.+|.|.|+|.|.|..|.....+.|.|.+
T Consensus 170 ~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 170 ADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp ECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred ECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 222333 23446778999999999999999998888887743
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-21 Score=199.39 Aligned_cols=244 Identities=14% Similarity=0.082 Sum_probs=170.1
Q ss_pred CCeEEEecCCCCCCEEEEEEE-EecCCc----EEEE--EEEEE-cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCce
Q psy14886 240 GGLLEITNASFADAGEYECVV-KSTVGK----ISTK--TTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 311 (505)
Q Consensus 240 ~~~l~i~~~~~~~~g~y~C~~-~n~~g~----~~~~--~~l~v-~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~ 311 (505)
...+.+..+.+...+.|+..| .|..|. ...+ +.+.. ..+|.+|..+.+...+.+++.|+|++|...++.+.+
T Consensus 548 ~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~ 627 (897)
T 2dtg_E 548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITH 627 (897)
T ss_dssp CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSE
T ss_pred ccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeE
Confidence 356888899888888889998 777775 2222 22222 347788888999888999999999999877888999
Q ss_pred EEEEEEeCCCC-----------------------------------------------------------------CeEE
Q psy14886 312 YKIIARTNWNS-----------------------------------------------------------------TWFN 326 (505)
Q Consensus 312 y~v~~~~~~~~-----------------------------------------------------------------~w~~ 326 (505)
|.|+|+..... .|..
T Consensus 628 Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~ 707 (897)
T 2dtg_E 628 YLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED 707 (897)
T ss_dssp EECCEEEECCCCSCTTCSSSCSCCCCCC----------------------------------------------------
T ss_pred EEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEE
Confidence 99988764321 1110
Q ss_pred eeeccccce-----------------------eeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCC-CC-CCCCccC
Q psy14886 327 VSEHVIGKE-----------------------VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP-SS-PSPQYNT 381 (505)
Q Consensus 327 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~-s~-~~~~~~t 381 (505)
......... .........+.+. +|.|++.|.|+|.|.|..|.+++ +. ....+.|
T Consensus 708 ~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~-gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T 786 (897)
T 2dtg_E 708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVIS-GLRHFTGYRIELQACNQDTPEERCSVAAYVSART 786 (897)
T ss_dssp ----------------------------CCSCSCEECSCSEEEEC-SSCSSCEEEECCEEESCSSSSCCBCCCCCEEEEC
T ss_pred ccCceEEccCCCcccccccccccccCccccceEEecCCceEEEEC-CCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEec
Confidence 000000000 0000122344444 59999999999999999998764 22 2224556
Q ss_pred CC-CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 382 PA-DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 382 ~~-~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
.+ ..++.+|.++.+...+.++|.|+|++ +.+.+|.|++|.|+|+..+. .|....+..........+.|.+|.|+ +
T Consensus 787 ~~~~~~p~~P~~l~~~~~~~~sv~LsW~~--P~~~nG~I~~Y~V~y~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~pg-t 862 (897)
T 2dtg_E 787 MPEAKADDIVGPVTHEIFENNVVHLMWQE--PKEPNGLIVLYEVSYRRYGD-EELHLCDTRKHFALERGCRLRGLSPG-N 862 (897)
T ss_dssp CCCCCCCCCCCCCCCCSSSSSCCCCCCCC--CCSCSSCEEEECCCCBSSSB-CCCCCCCCSSSCCCTTCCCCCSCCSS-E
T ss_pred cCccCCCCCCcceEEEeCCCCEEEEEECC--CCCCCCCEEEEEEEEEECCC-cceEEEEeeeeecccCcEEECCCCCC-c
Confidence 54 35567888999888889999999998 45788899999999998774 22211111111123456789999999 6
Q ss_pred EEEEEEEecCCCCCCCCceEEEeecceE
Q psy14886 461 YEVKVQAINDVGPGPESEVVTIWHDPLV 488 (505)
Q Consensus 461 Y~~~v~a~n~~G~g~~s~~~~~~t~p~~ 488 (505)
|.|+|+|+|.+|.|++|+.+.+.|.+..
T Consensus 863 Y~~rV~A~n~~G~G~~S~~v~~~T~~~p 890 (897)
T 2dtg_E 863 YSVRIRATSLAGNGSWTEPTYFYVTDYL 890 (897)
T ss_dssp ECCCCCEEETTBCCCCCCCCEECCCCCC
T ss_pred EEEEEEEEeCCcccCCCCCEEEEeCCCC
Confidence 9999999999999999999999987643
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=164.73 Aligned_cols=257 Identities=12% Similarity=0.082 Sum_probs=100.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|++++|+|.+....+..+.|.-. +..+.. ... ....+.+.+++ .+ |.|+|.+..........
T Consensus 11 V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~------~g~----~~~~~~l~~v~-~~--~~y~C~~~~~~~~~~~~ 77 (291)
T 1mq8_A 11 LPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL------PGN----NRKVYELSNVQ-ED--SQPMCYSNCPDGQSTAK 77 (291)
T ss_dssp ECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCC------SCS----SEEEEEEESCC-SC--CCCEEEEECSSCEEEEE
T ss_pred EcCCCeEEEEEeCCCCCCccceEEecCCCccccc------CCC----ceEEEEEEecc-cC--CeEEEEEEcCCccEEEE
Confidence 57899999999996433344888541 111100 000 01247888887 53 46999997543344556
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC--eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCE
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~--~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G 155 (505)
+.|.|...|..+.+.+.+ ..+.+|+.++|.|.+.+. |.. .|+|+|+++.+............+|.+.....+|++
T Consensus 78 v~l~V~~~P~~v~I~~~~--~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~ 155 (291)
T 1mq8_A 78 TFLTVYWTPERVELAPLP--SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGA 155 (291)
T ss_dssp CEEEECBCCSCCCBCCCC--SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSC
T ss_pred EEEEEecCCCCCEEecCC--ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCc
Confidence 788888644344444322 337899999999998876 433 699999998775321000001224666666677777
Q ss_pred EEEEEEEcCCCc--------eeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCC-CeEEEEEeCCEEecCC
Q psy14886 156 IYSCTATNVHGM--------DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRIGNM 226 (505)
Q Consensus 156 ~y~C~~~~~~g~--------~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~~~~~~ 226 (505)
.|+|.|.+..+. .+....|.|.+.|...........+..|+.++|.|.+.+.+++ .+.+.|.++|..+...
T Consensus 156 ~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~ 235 (291)
T 1mq8_A 156 NFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235 (291)
T ss_dssp EEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------------------------
T ss_pred eEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCce
Confidence 999999987552 2334677777765432111112256789999999999997544 5778899998887642
Q ss_pred CCCcccCCeeeecCCeEEEecC---CC--CCCEEEEEEEEecCCcEEEEEEEEEcCCCCC
Q psy14886 227 DLNELETPNINIDGGLLEITNA---SF--ADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~---~~--~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~ 281 (505)
. ..++..+.+... .. +..+.|+|.|.+..........|+|...|.|
T Consensus 236 ~---------~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~ 286 (291)
T 1mq8_A 236 V---------TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286 (291)
T ss_dssp ------------------------------------------------------------
T ss_pred e---------eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCc
Confidence 1 112223333322 23 3467778888875555667778888776544
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=160.91 Aligned_cols=178 Identities=20% Similarity=0.296 Sum_probs=119.7
Q ss_pred CCCCCceEEEEEEeccCC-----CeEEEEECCEECcCCCC------CCCCCCcEEEE-------CCeEEEEcCCCCCCCe
Q psy14886 1 MDNQADLTWTCEAFGVPD-----VTYSWFRNGELLNSETL------PLEDQDRYFIQ-------DNVLTIRYLNPERDPA 62 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-----~~~~W~~~~~~l~~~~~------~~~~~~~~~~~-------~~~L~i~~~~~~~d~G 62 (505)
+.+|++++|.|.+.+.|. +.+.|+|++........ .....+|+.+. +.+|.|.+++ .+|+|
T Consensus 7 ~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~-~~D~G 85 (222)
T 4i0k_A 7 ALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR-VTDEG 85 (222)
T ss_dssp CCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCC-GGGCS
T ss_pred EECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcc-cccCE
Confidence 568999999999987653 78999998643310000 00123445442 5689999999 99999
Q ss_pred EEEEEEEcccCceEeeEEEEEEecC--CCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEE-CCEEecCCCcEEE
Q psy14886 63 MYQCRAKNQLKTRYSSAQLRVLTLK--PSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKK-DGNIIGSGGRRKI 138 (505)
Q Consensus 63 ~Y~C~~~~~~~~~~~~~~l~v~~~~--p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~-~g~~~~~~~~~~~ 138 (505)
.|+|.+.+. +.....+.|.|...+ |.+...+ ...+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+........
T Consensus 86 ~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~---~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~ 161 (222)
T 4i0k_A 86 SYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP---NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQ 161 (222)
T ss_dssp CEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC--------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEE
T ss_pred EEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC---CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeE
Confidence 999999975 333445566665422 3333322 2357789999999999 788999999999 5555443222222
Q ss_pred e--eCCC---EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeee
Q psy14886 139 F--ENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183 (505)
Q Consensus 139 ~--~~~~---l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~ 183 (505)
. .++. |.|.++..+|.|.|+|.|.|..|.....+.|.|..+|...
T Consensus 162 ~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~ 211 (222)
T 4i0k_A 162 MANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTF 211 (222)
T ss_dssp EECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-----
T ss_pred EcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcccc
Confidence 2 2232 7889999999999999999999999999999987665443
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=153.07 Aligned_cols=177 Identities=21% Similarity=0.312 Sum_probs=130.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe------------cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~------------~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
....+.+|+++.|.|.+.+.|.+.+.|++++..+ ....+.... ...|.|.+++..|+|.|+|.+.+.
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~Y~C~~~~~ 87 (212)
T 1f97_A 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGEYTCMVSEE 87 (212)
T ss_dssp SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEEEEEEEEET
T ss_pred CCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeEEEEEEEcc
Confidence 5677899999999999998888999999976542 113344333 478999999999999999999998
Q ss_pred CC--ceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEE-eeecCCCCeEEEEEeCCE-EecCCCCC--cc--cCCee
Q psy14886 165 HG--MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS-AHTEELLDVAYIWTHNGV-RIGNMDLN--EL--ETPNI 236 (505)
Q Consensus 165 ~g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~~~w~~~~~-~~~~~~~~--~~--~~~~~ 236 (505)
.| .....+.|.|..+|...... ....+..|+.+.|.|. +.+.|.+ .+.|++++. .+...... .. .....
T Consensus 88 ~g~~~~~~~~~l~V~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~--~i~W~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (212)
T 1f97_A 88 GGQNYGEVSIHLTVLVPPSKPTIS-VPSSVTIGNRAVLTCSEHDGSPPS--EYSWFKDGISMLTADAKKTRAFMNSSFTI 164 (212)
T ss_dssp TSSSEEEEEEEEEEEBCCCCCEEE-CCSEEETTSCEEEEEECSCCBSCC--EEEEEETTEESBC-----CBSCSSSCEEE
T ss_pred CCCcccEEEEEEEEEcCCCCcccC-CccccCCCCeEEEEEEcccCcCCC--EEEEEeCCcccccccccccccccCceeEe
Confidence 76 44556788887777655432 2356788999999999 6777665 677999998 66542211 00 01112
Q ss_pred eecCCeEEEecCCCCCCEEEEEEEEecCCcE--EEEEEEEEcC
Q psy14886 237 NIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEG 277 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~--~~~~~l~v~~ 277 (505)
......|.|..+..+|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 165 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 2346789999999999999999999999987 4556666654
|
| >3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=167.49 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=180.7
Q ss_pred eCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCC--CCEEEEEEEEe
Q psy14886 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA--DAGEYECVVKS 262 (505)
Q Consensus 185 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~C~~~n 262 (505)
..|....+..|.++++.|..... + .....++..... ..+......+++.++... ....|.|...
T Consensus 203 ifP~~~vv~~GS~vt~~Ci~~~~----~-~~~~l~~~~~~~--------~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~- 268 (483)
T 3e0g_A 203 VFPQDKVILVGSDITFCCVSQEK----V-LSALIGHTNCPL--------IHLDGENVAIKIRNISVSASSGTNVVFTTE- 268 (483)
T ss_dssp EESCSEEEETTCCEEEEECCSSC----E-EEEESSSCCBCC--------EECSSSCEEEEECSCCCCCSSCEEEEEEES-
T ss_pred EeccCCEEeCCCCEEEEEEeCcc----c-cceecCccccee--------EEecCCEEEEEEeCCCCccCccceEEEecC-
Confidence 44666778899999999987631 1 112222111110 111222345666666542 3467999852
Q ss_pred cCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCC---CCCceEEEEEEeCCCCCeEEeeeccccceeeee
Q psy14886 263 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG---RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 339 (505)
Q Consensus 263 ~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~---~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~ 339 (505)
.......+.+..+|++|.++.+.......++++|+++.+.+ .+.+.|.|.|+..+ ....+..... ..
T Consensus 269 ---~~~~g~~l~vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g--~~~~C~~~~~-----~~ 338 (483)
T 3e0g_A 269 ---DNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSG--KYVRLKRAEA-----PT 338 (483)
T ss_dssp ---SCEEEEEEEEECCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTC--CEEEECCCSS-----CS
T ss_pred ---CcccceEEECcCCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECC--CCccccCCcc-----cC
Confidence 23455667888899999999998888889999999987653 23788999987542 2222211100 00
Q ss_pred cCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCC
Q psy14886 340 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419 (505)
Q Consensus 340 ~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i 419 (505)
.......+.. |.+.+.|.|+|.|.|..|.+.. .. .+......+|.||.++++.....+.+.|+|++| ...++.+
T Consensus 339 ~~~~~C~~~~-l~~~t~Y~f~V~A~N~lG~~~S-~~--~~~~~~~VkP~PP~nl~v~~~~stsl~LsW~~P--~~~~~~~ 412 (483)
T 3e0g_A 339 NESYQLLFQM-LPNQEIYNFTLNAHNPLGRSQS-TI--LVNITEKVYPHTPTSFKVKDINSTAVKLSWHLP--GNFAKIN 412 (483)
T ss_dssp CSCEEEEEEC-CTTCCCEEEEEEEECSSCEEEE-EE--EECGGGGBCCCCCEEEEECCSSSSSCCEEEECC--SCCTTSB
T ss_pred CCEEEEEEcc-CCCCcEEEEEEEEEeCCCCccc-ce--EEEeccccCCCCCeeeEEEEecCCeEEEEECCC--CCCCCce
Confidence 1122344444 8899999999999999998863 32 444446677789999999877889999999984 3566678
Q ss_pred ceEEEEEEEcCCC-CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCC---CCCCceEEEeecc
Q psy14886 420 IYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP---GPESEVVTIWHDP 486 (505)
Q Consensus 420 ~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~---g~~s~~~~~~t~p 486 (505)
+.|.|+|+..+.. .|....+.. .......+.|.+|.|++.|.|+|+|. ..|. |++|+...+.|..
T Consensus 413 L~YeVrYr~~~~~~~~~~vsv~~-~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E 481 (483)
T 3e0g_A 413 FLCEIEIKKSNSVQEQRNVTIQG-VENSSYLVALDKLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTE 481 (483)
T ss_dssp CCCEEEEECSSSCCCEEECCCBC-CSSSBCCCCCCSCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCC
T ss_pred EEEEEEEEECCCCCceEEEEEec-cCCceeEEEEeccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCC
Confidence 9999999998754 354322211 01122357899999999999999999 7777 6777777777754
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-20 Score=162.05 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=114.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC-----ce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK-----TR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~-----~~ 75 (505)
|.+|++++|.|.+.+ +...|.|+|+|..+...... ........+..|.|.+++ .+|+|.|+|.+.+... ..
T Consensus 18 V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~--~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~a~~~~~~~~~s~~ 93 (257)
T 1b6u_A 18 VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLI--GEHHDGVSKANFSIGPMM-QDLAGTYRCYGSVTHSPYQLSAP 93 (257)
T ss_dssp EESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEE--CBCCTTCEEEEEEECSCC-TTTCEEEEEEEECSSCTTSCCCC
T ss_pred ecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceee--eeccCCCceEEEEeecCC-cccCEEEEEeEeccCCCcccccc
Confidence 458999999999964 56899999998755310000 000001134689999999 9999999999986421 12
Q ss_pred EeeEEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe----eCCCEEEcCC
Q psy14886 76 YSSAQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENGNLLISPV 149 (505)
Q Consensus 76 ~~~~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----~~~~l~i~~v 149 (505)
...+.|.|... +|.+...+. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+......... .+..|.|.++
T Consensus 94 S~~~~L~V~~~~~~P~l~~~p~---~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v 169 (257)
T 1b6u_A 94 SDPLDIVITGLYEKPSLSAQPG---PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA 169 (257)
T ss_dssp CCCEEEEEECSSCCCEEECSSC---TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEEC
T ss_pred CCCEEEecccCCCCcceEccCC---CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEeccc
Confidence 33567777753 344444332 2478999999999998764 699999999765432211111 1346999999
Q ss_pred CCCCCEEEEEEEEcCCC-----ceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEee
Q psy14886 150 SRDDSGIYSCTATNVHG-----MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g-----~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 205 (505)
+ |+|.|+|.+.+... ..+..+.|.|...|......+.......|..+.|.|.+-
T Consensus 170 ~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~ 228 (257)
T 1b6u_A 170 T--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAE 228 (257)
T ss_dssp C--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------------
T ss_pred c--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEc
Confidence 8 99999999997532 223347788877665442222223345678888888653
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=154.67 Aligned_cols=175 Identities=13% Similarity=0.208 Sum_probs=119.0
Q ss_pred CCCCceEEEEEEeccC-----CCeEEEEECCEECcCC--------CCCCCCCCcEEEEC-------CeEEEEcCCCCCCC
Q psy14886 2 DNQADLTWTCEAFGVP-----DVTYSWFRNGELLNSE--------TLPLEDQDRYFIQD-------NVLTIRYLNPERDP 61 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p-----~~~~~W~~~~~~l~~~--------~~~~~~~~~~~~~~-------~~L~i~~~~~~~d~ 61 (505)
.+|++++|.|.+.+.| ...+.|+|++..+... .......+|..+.. .+|.|.+++ .+|+
T Consensus 14 ~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~-~~D~ 92 (222)
T 3sbw_C 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK-LQDA 92 (222)
T ss_dssp ETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC-GGGC
T ss_pred EcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc-cccC
Confidence 5799999999997655 3589999976433110 00001124554432 389999999 9999
Q ss_pred eEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEEC-CEEecCCCcEEEe-
Q psy14886 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIF- 139 (505)
Q Consensus 62 G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~- 139 (505)
|.|+|.+.+ .+.....+.|.|.. ++..... .....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+.........
T Consensus 93 G~Y~C~~~~-~~~~~~~~~l~V~~-~~~~~~~--~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~ 168 (222)
T 3sbw_C 93 GVYRCMISY-GGADYKRITVKVNA-PYNKINQ--RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK 168 (222)
T ss_dssp EEEEEEEES-SSEEEEEEEEEEEB-CCCCCEE--EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC
T ss_pred eEEEEEEEe-CCCceeEEEEEEEC-CCCCCCc--eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEc
Confidence 999999998 55566677788874 3322111 1112567899999999999999999999998 6655433222121
Q ss_pred -eCCCEEEc---CCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 140 -ENGNLLIS---PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 140 -~~~~l~i~---~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
.++.+.+. .+...|.|.|+|.|.|..|.....+.|.|...|.
T Consensus 169 ~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 169 REEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL 214 (222)
T ss_dssp ----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred CCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence 12333222 4557899999999999999999888888865543
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-20 Score=157.19 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=119.5
Q ss_pred CCCCCceEEEEEEeccCCC---eEEEEECCEECcCCCC-----------CCCCCCcEEE-------ECCeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDV---TYSWFRNGELLNSETL-----------PLEDQDRYFI-------QDNVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~---~~~W~~~~~~l~~~~~-----------~~~~~~~~~~-------~~~~L~i~~~~~~~ 59 (505)
|.+|++++|.|.+.+.|.+ .|.|+|++..+..... .....+|+.. .+.+|.|.+++ .+
T Consensus 11 v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~-~~ 89 (218)
T 4frw_A 11 VVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV-QA 89 (218)
T ss_dssp EETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCC-GG
T ss_pred EEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeecc-HH
Confidence 3589999999999887654 5899998754431100 0001123322 13579999999 99
Q ss_pred CCeEEEEEEEcccCceEee-EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE
Q psy14886 60 DPAMYQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 138 (505)
Q Consensus 60 d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~ 138 (505)
|+|.|.|.+.+..+..... ..+.+.. ++...... .....+..|+.+.|.|.+.+.|.+.|.|++++..+........
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~ 167 (218)
T 4frw_A 90 DEGEYECRVSTFPAGSFQARLRLRVLV-PPLPSLNP-GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKH 167 (218)
T ss_dssp GCEEEEEEEEEETTEEEEEEEEEEEEB-CCCCEEEE-CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEEC
T ss_pred HCCceeEEEEeccCceeeeEEEEEEee-eccceeee-eeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEec
Confidence 9999999998766554443 3344443 33322222 2445678899999999999999999999999876654322211
Q ss_pred e----eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 139 F----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 139 ~----~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
. ..+.|.|.++...|+|.|+|.|.|..|.....+.+.|
T Consensus 168 ~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v 209 (218)
T 4frw_A 168 SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 209 (218)
T ss_dssp SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence 1 1235999999999999999999999998877666554
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=169.68 Aligned_cols=173 Identities=17% Similarity=0.235 Sum_probs=128.5
Q ss_pred CCC---CceEEEEE-EeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 2 DNQ---ADLTWTCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 2 ~~G---~~~~l~C~-~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.+| +.++|.|. +.+.|.+.+.|+|++.............+.+.+ .+.|.|..++ .+|+|.|+|.|.|..+....
T Consensus 145 ~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~-~~d~G~Y~C~a~n~~~~~~~ 222 (331)
T 3u83_A 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV-ISRYRLVPSR-EAHQQSLACIVNYHMDRFKE 222 (331)
T ss_dssp CTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEE-EEEEEECCCG-GGTTCEEEEEEEETTEEEEE
T ss_pred cCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEE-EEEEEEEecc-ccCCCEEEEEEecCCCccee
Confidence 456 77999998 778899999999953211100000011222222 2568899999 99999999999999888777
Q ss_pred eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCe-EEEEECCEEecCCCcEEEeeCCCEEEc-CCCCCCCE
Q psy14886 78 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGRRKIFENGNLLIS-PVSRDDSG 155 (505)
Q Consensus 78 ~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~-i~W~~~g~~~~~~~~~~~~~~~~l~i~-~v~~~d~G 155 (505)
.+.|.|.. +|.+...+. ....+.+|+.+.|.|.+.+.|.+. +.|++++..+... ....+++|.|. ++..+|.|
T Consensus 223 ~~~l~V~~-~P~~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~---~~~~~~~L~i~~~v~~~d~G 297 (331)
T 3u83_A 223 SLTLNVQY-EPEVTIEGF-DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG---VEAQNRTLFFKGPINYSLAG 297 (331)
T ss_dssp EEECCEEE-EEEEEEECC-CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT---EEEETTEEEECSCCCGGGCE
T ss_pred eEEEEEec-CCeEEEecC-CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc---ceecCcEEEEeCCCccccCe
Confidence 88888875 555543332 334578999999999999999887 9999999877543 22356789999 99999999
Q ss_pred EEEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 156 IYSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
.|+|.|.|..|.....+.|.|...+.
T Consensus 298 ~Y~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 298 TYICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp EEEEEEEETTEEEEEEEEECCBC---
T ss_pred EEEEEEEeccccceEEEEEEEeccch
Confidence 99999999999988888888866543
|
| >4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=156.96 Aligned_cols=167 Identities=19% Similarity=0.163 Sum_probs=103.6
Q ss_pred CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCC
Q psy14886 305 NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384 (505)
Q Consensus 305 ~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~ 384 (505)
.+..|++|.++++......+..... .....+.+.+ |.|++.|.|||+|.|..|.|+++... .+.+...
T Consensus 18 ~~~~Vt~Y~~~~~~~~~~~~~~~~~----------~~~t~~~~~~-L~p~t~Y~frV~A~n~~G~g~~s~~~-~~~t~~~ 85 (232)
T 4go6_B 18 TNVMVTHYFLPPDDAVPSDDDLGTV----------PDYNQLKKQE-LQPGTAYKFRVAGINACGRGPFSEIS-AFKTCLP 85 (232)
T ss_dssp SEEEECEEECCCC----------------------------CEEE-CCTTCEEEEEEEEEETTEEEEECCCE-EEECCCT
T ss_pred CCEEEEEEEEEeeCCCCCcEEEEEC----------CCccEEEeCC-CCCCCEEEEEEEEEeCCCccccccce-eeeecCC
Confidence 3455677877765433222221111 1223445555 99999999999999999999888765 5556666
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeee----------cCceeeEEE----
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE----------YGNVGIAVV---- 450 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~---- 450 (505)
.|+++|..+.. ..+.++|.|.|++ +.+.+|+|++|+|+|+..+...+....... ......+.+
T Consensus 86 ~~~~~~~~~~~-~~~~~sv~l~W~~--P~~~~G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (232)
T 4go6_B 86 GFPGAPCAIKI-SKSPDGAHLTWEP--PSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSS 162 (232)
T ss_dssp TSCCCCEEEEE-EEETTEEEEEEEC--CSCCSSCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHH
T ss_pred CCCCCCeeeEE-ecCCCEEEEEEeC--CCCCCCceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccc
Confidence 66667765554 4567899999998 556788999999999987633322111100 001112222
Q ss_pred ---EcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 451 ---RIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 451 ---~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.+.+|.+++.|.|||+|+|.+|.|++|++....+.+
T Consensus 163 l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~ 201 (232)
T 4go6_B 163 LSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETS 201 (232)
T ss_dssp HTTBCBEESSSEEEEEEEEEECSSCBCCCEEEEEECC--
T ss_pred cEEeeecCccCCceEEEEEEECCCcCCCCcccEEeccCC
Confidence 346788999999999999999999999977665543
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=146.48 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=116.8
Q ss_pred eEEeeCCCeEEEEeecCC--CCCCeEEEEECCEEec----------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 98 ETYAGEGGNVTIFCNPEA--APKPKFVWKKDGNIIG----------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~--~p~~~i~W~~~g~~~~----------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
.+.+.+|+++.|.|...+ .+.+.|.|+|++..+. ...++.+..+++|.|.+++.+|+|.|+|.+.|..
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~ 84 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 84 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence 356789999999996433 4566999999997542 3456677677889999999999999999999999
Q ss_pred Cce--eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeE
Q psy14886 166 GMD--ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243 (505)
Q Consensus 166 g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (505)
|.. ...+.|.|..++.. +. ....+..+.|.|.+.+.|.| .+.|+++|..+.... .+
T Consensus 85 g~~~~~~~~~l~V~~~~~~-----p~-i~~~~~~v~L~C~~~g~p~p--~i~W~~~g~~l~~~~--------------~~ 142 (176)
T 1hng_A 85 GTRILNKALDLRILEMVSK-----PM-IYWECSNATLTCEVLEGTDV--ELKLYQGKEHLRSLR--------------QK 142 (176)
T ss_dssp CCEEEEEEEEEEEECCCCC-----CE-EEEETTTTEEEEECSSCSSC--EEEEEETTEEEEEES--------------SS
T ss_pred CCEEEEEEEEEEEeCCCCC-----CE-EEecCCcEEEEEEecCCCCc--EEEEEECCEECCCCC--------------cE
Confidence 886 55677777654321 11 12234469999999988764 677999998875421 13
Q ss_pred EEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 244 EITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 244 ~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
.+..+..+|.|.|+|.|.|..|.......|.+
T Consensus 143 ~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 143 TMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 34456689999999999999998877765543
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-19 Score=158.39 Aligned_cols=186 Identities=14% Similarity=0.083 Sum_probs=121.4
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeE
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~ 358 (505)
..+|.++.+... ...+.|+|+++.+...++. |.|+|+..+...|.....-.. .......+....|.++..|.
T Consensus 4 l~~P~nv~~~~~-n~~~iL~W~pp~~~~~~v~-Y~V~y~~~~~~~W~~~~~c~~------~~~~~c~lt~~~l~~~~~Y~ 75 (306)
T 3s98_A 4 LKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSGCQN------ITSTKCNFSSLKLNVYEEIK 75 (306)
T ss_dssp ----CCCEEEEE-TTEEEEECC--------CE-EEEEEEESSCSSCEECTTCSS------BSSSEEECCC---CTTSCEE
T ss_pred CCCCcEeEEEEE-CCeEEEEEcCCCCCCCCeE-EEEEEEECCCCCcEECCCccC------CCCCEEEccccccCCCCcEE
Confidence 346788888765 5567899999987666665 999999988888987521110 00111111112378999999
Q ss_pred EEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCcccc-----CCCCceEEEEEEEcCCCC
Q psy14886 359 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ-----NAPNIYYKIFWRKKNDTE 433 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~-----~~~i~~Y~v~~~~~~~~~ 433 (505)
|||+|.| .|.|+++... .+.+....+++||. +.+... .++|.|.|+| +...+ +|.+++|+|.|++.+...
T Consensus 76 ~rV~A~n-~~~S~~s~~~-~f~~~~~~~~~pP~-v~~~~~-~~si~v~w~P-~~~~~~~~~~~g~~l~Y~v~y~~~~~~~ 150 (306)
T 3s98_A 76 LRIRAEK-ENTSSWYEVD-SFTPFRKAQIGPPE-VHLEAE-DKAIVIHISP-GTKDSVMWALDGLSFTYSLVIWKNSSGV 150 (306)
T ss_dssp EEEEEEC-SSCEEEEECC-CBCHHHHCBCCCCE-EEEEEC-SSCEEEEEEC-C---CCCC-----CCEEEEEEEETTTCC
T ss_pred EEEEEEe-CCcCCCEeee-eEechhhCccCCCe-EEEEEc-CCEEEEEEEC-CCCCCcceeccCCcEEEEEEEEECCCCC
Confidence 9999999 8877665432 55555556677786 776643 4689999995 33322 578999999999987443
Q ss_pred -cEEEEeeecCceeeEEEEcCCccceeeEEEEEEEec--CCCCCCCCceEEEee
Q psy14886 434 -FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIN--DVGPGPESEVVTIWH 484 (505)
Q Consensus 434 -~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n--~~G~g~~s~~~~~~t 484 (505)
|.. . . ....+.|.+|.|++.|.|+|+|+| .+|.|++|+.+.+.|
T Consensus 151 ~~~~-~--~----~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T 197 (306)
T 3s98_A 151 EERI-E--N----IYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT 197 (306)
T ss_dssp CEEE-E--E----ECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEEC
T ss_pred eEEE-e--c----ccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEe
Confidence 431 1 1 235788999999999999999999 789999999999887
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=149.73 Aligned_cols=174 Identities=19% Similarity=0.316 Sum_probs=126.2
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEec-------------------CCCcEEEeeCCCEEEcCCCCCCCEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-------------------SGGRRKIFENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~-------------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C 159 (505)
..+.+|+++.|.|...+.+.+.+.|++++.... ...+..+..+++|.|.+++..|+|.|+|
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C 88 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88 (208)
T ss_dssp SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence 458899999999998888888999998753211 1235555556789999999999999999
Q ss_pred EEEcCC-CceeeeEEEEEEeCCe--eeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCee
Q psy14886 160 TATNVH-GMDESKGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236 (505)
Q Consensus 160 ~~~~~~-g~~~~~~~l~v~~~p~--~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 236 (505)
.+.+.. +.....+.|.|..++. .+.... .. +..|+.+.|.|.+.+.+ + .+.|++++..+.... ....
T Consensus 89 ~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~-~~~g~~v~l~C~~~~~p-p--~i~W~~~g~~l~~~~-----~~~~ 158 (208)
T 3r4d_A 89 DMTDENYRRTQATVRFHVHQPVTQPFLQVTN-TT-VKELDSVTLTCLSNDIG-A--NIQWLFNSQSLQLTE-----RMTL 158 (208)
T ss_dssp EEECSSCEEEEEEEEEEEECCCCCCEEEESC-SS-CCTTCCEEEEEECSCTT-C--EEEEEETTEECCCCS-----SEEE
T ss_pred EEEcccCceeEEEEEEEeccCCCCCEEecCC-ce-EeeCCCEEEEEECCCCC-C--ceEEEECCEeCCCCC-----CeEE
Confidence 999985 4445557788865432 222222 22 77899999999998854 3 678999998886532 1233
Q ss_pred eecCCeEEEecCCCCCCEEEEEEEEecCCcEE-EEEEEEEcCCCCCC
Q psy14886 237 NIDGGLLEITNASFADAGEYECVVKSTVGKIS-TKTTVIVEGPPGLP 282 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~v~~~p~~p 282 (505)
...+..|.|..+..+|.|.|+|.|.|..|... ..++|.|..+|..+
T Consensus 159 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~~ 205 (208)
T 3r4d_A 159 SQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205 (208)
T ss_dssp ETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC------
T ss_pred cCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCccc
Confidence 33457899999999999999999999999854 56778777766543
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-19 Score=146.88 Aligned_cols=161 Identities=18% Similarity=0.295 Sum_probs=123.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEE--ecC------------CCcEEEe----e--CCCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI--IGS------------GGRRKIF----E--NGNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~--~~~------------~~~~~~~----~--~~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|+++.|.|.+.+.|.+.+.|++++.. +.. ..+.... . ..+|.|.+++.+|+|.
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 346789999999999999888899999998752 210 1222222 1 2359999999999999
Q ss_pred EEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCee
Q psy14886 157 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236 (505)
Q Consensus 157 y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 236 (505)
|+|.+.+..+ .+.|.|...+ . +....+..|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus 83 Y~C~~~~~~~----~~~l~V~~~~----~-~~~~~v~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~------------- 138 (184)
T 2ny1_B 83 YICEVEDQKE----EVQLLVFGLT----A-NSDTHLLQGQSLTLTLESPPGSSP--SVQCRSPRGKN------------- 138 (184)
T ss_dssp EEEEETTEEE----EEEEEEEEEE----E-SSCSEEETTCCEEEEEECCTTCCC--EEEEECTTSCE-------------
T ss_pred EEEEEEcCCC----cEEEEEEEec----C-CCCceeecCCCEEEEEEcCCCCCC--EEEEEeCCCcc-------------
Confidence 9999987643 4556664311 1 334577899999999999887644 67799876443
Q ss_pred eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCC
Q psy14886 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~ 281 (505)
......|.|..+..+|.|.|+|.|.|..+..+..+.|.|.+.|.+
T Consensus 139 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~ 183 (184)
T 2ny1_B 139 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183 (184)
T ss_dssp EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence 234578999999999999999999999999999999999988764
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-19 Score=155.60 Aligned_cols=227 Identities=13% Similarity=0.140 Sum_probs=152.5
Q ss_pred EeeCCCeEEEEeecCC-CCCC--eEEEEECCEEecCCCcEEEeeCCCEEEcCC---CCCCCEE--EEEEEEcCCCceeee
Q psy14886 100 YAGEGGNVTIFCNPEA-APKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPV---SRDDSGI--YSCTATNVHGMDESK 171 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~-~p~~--~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v---~~~d~G~--y~C~~~~~~g~~~~~ 171 (505)
.+.+|+.++|.|.+.+ .|.+ .+.|+++|..+.. .....++.+.+..+ +..|.|. |+|.+.|..|.....
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~ 90 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 90 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE
Confidence 5889999999999988 6766 9999999998764 22233445666555 6778885 999999999988888
Q ss_pred EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCC
Q psy14886 172 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA 251 (505)
Q Consensus 172 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 251 (505)
+.|.|...|..... .....+..|+.+.|.|.+. +. ..+.| +|..+.... ....|.+..+..+
T Consensus 91 ~~l~V~~~p~p~~~-~~~~~v~~G~~v~l~C~~~--p~--~~i~W--~g~~~~~~~-----------~~~~l~i~~~~~~ 152 (265)
T 2oz4_A 91 QTVTIYSFPAPNVI-LTKPEVSEGTEVTVKCEAH--PR--AKVTL--NGVPAQPLG-----------PRAQLLLKATPED 152 (265)
T ss_dssp EEEEEECCCCCEEE-ESCSEEETTCEEEEEEECC--TT--SEEEE--SSCSSSCCS-----------SEECCEEECCGGG
T ss_pred EEEEEeCCCCceee-cCCceecCCCcEEEEEEcc--CC--CEEEE--CCEEccCCC-----------CcEEEEEcccccc
Confidence 89999764443222 2345678899999999988 44 46678 665552211 1245778888889
Q ss_pred CCEEEEEEEEecC-CcEE---EEEEEEEcCCCCCCCc---eEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCe
Q psy14886 252 DAGEYECVVKSTV-GKIS---TKTTVIVEGPPGLPGG---VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 324 (505)
Q Consensus 252 ~~g~y~C~~~n~~-g~~~---~~~~l~v~~~p~~p~~---~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w 324 (505)
+.|.|+|.|.|.. |... ..+.|.|..+|..... -......+..+.|.|.. .+.|...+. |
T Consensus 153 ~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~---~g~P~p~i~----------W 219 (265)
T 2oz4_A 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA---WGNPLPELK----------C 219 (265)
T ss_dssp TTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCC---EEESCCEEE----------E
T ss_pred CCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeEC---ccCCCCeEE----------E
Confidence 9999999998544 7655 6677888776654321 13344567788888862 222222232 2
Q ss_pred EEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 325 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
........ ... .+.. +...+.+.|+|.|.|..|...
T Consensus 220 ~~~~~~~~--------~~g--~~~~-v~~~d~G~Y~C~a~N~~G~~~ 255 (265)
T 2oz4_A 220 LKDGTFPL--------PIG--ESVT-VTRDLEGTYLCRARSTQGEVT 255 (265)
T ss_dssp EETTTEEC--------CTT--SCEE-CCGGGCEEEEEEEEETTEEEE
T ss_pred EECCcccC--------CCC--cEEE-eehhhCeEEEEEEECCCCcEE
Confidence 22111000 011 1123 777899999999999998653
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=142.84 Aligned_cols=156 Identities=20% Similarity=0.290 Sum_probs=119.7
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....+.+|+++.|.|.+.+.| .+.+.|+++|..+... ...+.+.++...|+|.|+|.+.+... ...+.|.
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-------~~~~~~~~~~~~d~G~Y~C~~~~~~~--s~~~~l~ 82 (170)
T 3ry4_A 12 PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------TQPSYRFKANNNDSGEYTCQTGQTSL--SDPVHLT 82 (170)
T ss_dssp CCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-------CSSEEEEECCGGGCEEEEEEETTSBC--CCCEEEE
T ss_pred CCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-------ccceEEEecccccCeEEEEEEeCCCc--eEeEEEE
Confidence 334688999999999999886 5699999999988653 34577889999999999999986433 3457777
Q ss_pred EEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEE
Q psy14886 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255 (505)
Q Consensus 176 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 255 (505)
|..++.... .....+..|+.+.|.|.+.+.++ ...+.|++++..+... .....|.|..+..+|.|.
T Consensus 83 v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~~~~~-----------~~~~~L~i~~v~~~d~G~ 148 (170)
T 3ry4_A 83 VLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKP-LVKVTFFQNGKSQKFS-----------HLDPTFSIPQANHSHSGD 148 (170)
T ss_dssp EECCSEEEE--CSCSEECTTCCEEEEEEEGGGCC-EEEEEEEETTEEEEEE-----------SSCCEEEESSCCGGGCEE
T ss_pred EECCceEec--CCCceeecCCeEEEEEECCCCCC-CceEEEEECCeEcccc-----------CCCCeEEEEeccccCCEE
Confidence 776654433 33456788999999999965543 3578899999876431 135679999999999999
Q ss_pred EEEEEEecCCc-EEEEEEEEE
Q psy14886 256 YECVVKSTVGK-ISTKTTVIV 275 (505)
Q Consensus 256 y~C~~~n~~g~-~~~~~~l~v 275 (505)
|+|.|.|..|. .+..+.|.|
T Consensus 149 Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 149 YHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEeCcCccccccEEEEE
Confidence 99999999886 344455554
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-20 Score=159.63 Aligned_cols=163 Identities=18% Similarity=0.269 Sum_probs=113.2
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEECCEECcCCCC------CCCCCCcEE----------E-ECCeEEEEcCCCCCCCe
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETL------PLEDQDRYF----------I-QDNVLTIRYLNPERDPA 62 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~------~~~~~~~~~----------~-~~~~L~i~~~~~~~d~G 62 (505)
+.+|++++|.|.+.+.+. +.+.|+|++.......+ ......++. + .++.|.|.+++ .+|+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G 90 (231)
T 2pet_A 12 VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ-VGDER 90 (231)
T ss_dssp EETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC-GGGCE
T ss_pred EEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC-cccCc
Confidence 358999999999998885 89999986543110000 000012222 3 23569999999 99999
Q ss_pred EEEEEEEccc-CceEeeEEEEEEecCCCccCCCCCceEEeeCCCeE-EEEeec-CCCCCCeEEEEECCEEecCCC----c
Q psy14886 63 MYQCRAKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNV-TIFCNP-EAAPKPKFVWKKDGNIIGSGG----R 135 (505)
Q Consensus 63 ~Y~C~~~~~~-~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v-~l~C~~-~~~p~~~i~W~~~g~~~~~~~----~ 135 (505)
.|+|.+.+.. +.....+.|.|...+.............+.+|+.+ .|.|.+ .+.|.+.+.|+++|..+.... +
T Consensus 91 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~ 170 (231)
T 2pet_A 91 DYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPE 170 (231)
T ss_dssp EEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSS
T ss_pred eEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccc
Confidence 9999999876 66667788888863322221222233446789988 999999 888999999999999887554 3
Q ss_pred EEEeeC------------CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 136 RKIFEN------------GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 136 ~~~~~~------------~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
..+... +.|.|.....+|.|.|+|.|.|.
T Consensus 171 ~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 171 GYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred eeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 333221 34777755566799999999994
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=152.59 Aligned_cols=152 Identities=14% Similarity=0.245 Sum_probs=106.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcE--EEECCeEEEEcCCCCCCCeEEEEEEEcccC-----
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY--FIQDNVLTIRYLNPERDPAMYQCRAKNQLK----- 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~----- 73 (505)
|.+|++++|.|.+.+ +.+.+.|+|+|..+..... ..+. ...++.|.|.+++ .+|+|.|+|.+.+...
T Consensus 19 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~----~~~~~~~~~~~~l~I~~v~-~~D~G~Y~C~a~~~~~~~~~~ 92 (201)
T 1nkr_A 19 VKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRL----IGEHHDGVSKANFSISRMT-QDLAGTYRCYGSVTHSPYQVS 92 (201)
T ss_dssp EETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEE----ECEEETTEEEEEEEESSCC-GGGCEEEEEEEEBTTBTTCCC
T ss_pred cCCCCcEEEEEeccC-CCCEEEEEECCCcCCccee----eeecCCCCceEEEEeccCC-cccCeEEEEeEecCCCCcccc
Confidence 458999999999974 6789999999876541100 0001 1235689999999 9999999999986421
Q ss_pred ceEeeEEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee----CCCEEEc
Q psy14886 74 TRYSSAQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLIS 147 (505)
Q Consensus 74 ~~~~~~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~----~~~l~i~ 147 (505)
.....+.|.|... +|.+...+ . ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.......... .+.|.|.
T Consensus 93 ~~s~~~~l~V~~~~~~p~i~~~p--~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~ 168 (201)
T 1nkr_A 93 APSDPLDIVIIGLYEKPSLSAQP--G-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLG 168 (201)
T ss_dssp CCCCCEEEEEECSSCCCEEEEES--C-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEeeccCCCCceecCC--C-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeC
Confidence 1233467777753 24443333 1 35889999999999886 467999999997664321111111 4569999
Q ss_pred CCCCCCCEEEEEEEEcC
Q psy14886 148 PVSRDDSGIYSCTATNV 164 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~ 164 (505)
+++ |+|.|+|.|.+.
T Consensus 169 ~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 169 PAT--HGGTYRCFGSFH 183 (201)
T ss_dssp ECC--SCEEEEEEEEET
T ss_pred CcC--CCeeEEEEEEcC
Confidence 998 999999999864
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=151.79 Aligned_cols=174 Identities=17% Similarity=0.244 Sum_probs=115.9
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc----CC------CCCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN----SE------TLPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~----~~------~~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|.+|++++|.|.+.+.| .+.|.|+|++ ..+. .. .......+|+.+.. .+|.|.+++ .+|
T Consensus 14 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D 92 (247)
T 2ghw_B 14 VQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR-AED 92 (247)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC-HHH
Confidence 46899999999999876 6889999942 1110 00 00001235666532 379999999 999
Q ss_pred CeEEEEEEEcccCc--eEeeEEEEEEec--------------CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEE
Q psy14886 61 PAMYQCRAKNQLKT--RYSSAQLRVLTL--------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~--~~~~~~l~v~~~--------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~ 124 (505)
+|.|+|.+.|..+. ....+.|.|... ++.+... +....+.+|++++|.|.+.+.+.+.+.|+
T Consensus 93 ~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~v~W~ 170 (247)
T 2ghw_B 93 TAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQS--PATLSLSPGERATLSCRASQSVRSNLAWY 170 (247)
T ss_dssp CEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEE--CSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred CEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEcc--CCEEEecCCCcEEEEEEeCCCccceEEEE
Confidence 99999999986322 122356777642 1112211 24566899999999999999988899999
Q ss_pred E--CCEEec------------CCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEEE
Q psy14886 125 K--DGNIIG------------SGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVL 177 (505)
Q Consensus 125 ~--~g~~~~------------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v~ 177 (505)
+ ++..+. ...++..... .+|.|.++..+|+|.|+|.|.+....... ...|.|.
T Consensus 171 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 171 QQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 9 554321 1234443322 24999999999999999999876443332 2455553
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=148.95 Aligned_cols=162 Identities=18% Similarity=0.282 Sum_probs=111.3
Q ss_pred CCCCCceEEEEEEecc-------CCCeEEEEECCEECcC------CC----CCCCCCCcEEEEC------CeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAFGV-------PDVTYSWFRNGELLNS------ET----LPLEDQDRYFIQD------NVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-------p~~~~~W~~~~~~l~~------~~----~~~~~~~~~~~~~------~~L~i~~~~~ 57 (505)
+.+|++++|.|.+.+. +.+.+.|+|++..... .. ......+|+.+.. .+|.|.+++
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~- 90 (214)
T 2zg1_A 12 VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR- 90 (214)
T ss_dssp EETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC-
T ss_pred EecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC-
Confidence 3589999999999754 4788999998653110 00 0112346776632 479999999
Q ss_pred CCCCeEEEEEEEcccCceE----eeEEEEEEecC--CCccCCCCCceEEeeCCCeEEEEeecCCC----CCCeEEEEECC
Q psy14886 58 ERDPAMYQCRAKNQLKTRY----SSAQLRVLTLK--PSFKKRPLESETYAGEGGNVTIFCNPEAA----PKPKFVWKKDG 127 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~~~~----~~~~l~v~~~~--p~~~~~~~~~~~~v~~g~~v~l~C~~~~~----p~~~i~W~~~g 127 (505)
.+|+|.|+|.+.+..+... ..+.|.|...+ |.+.. + . .+.+|+.++|.|.+.+. |.+.+.|++++
T Consensus 91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~--~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~ 165 (214)
T 2zg1_A 91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-L--E--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165 (214)
T ss_dssp GGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESST
T ss_pred HhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-C--c--cccCCCeEEEEEEeccCCCCCCCceEEEeCCC
Confidence 9999999999997653222 35777777532 33322 1 1 26789999999999774 78899999988
Q ss_pred EEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 128 NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
..+... . ....+.|.|..+..+|+|.|+|.|.|..+.....
T Consensus 166 ~~~~~~-~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~ 206 (214)
T 2zg1_A 166 LSPLDP-E--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTE 206 (214)
T ss_dssp TSSSCS-S--CCCSSEEEECCCTTCCSCEEEEEEECC----CCE
T ss_pred CccCCC-C--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceE
Confidence 654321 1 1335679999999999999999999976544333
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-20 Score=157.33 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=115.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|. +.... .........+|+... ..+|.|.+++ .+|+|.|+|.+.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 90 (213)
T 3mj8_L 12 VALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQ-AGDEADYYCQSW 90 (213)
T ss_dssp EETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEE
T ss_pred EeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCC-hhhCEEEEEEec
Confidence 46899999999999888999999992 22111 000111123466532 3479999999 999999999999
Q ss_pred cccC---ceEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCCc----E-
Q psy14886 70 NQLK---TRYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGR----R- 136 (505)
Q Consensus 70 ~~~~---~~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~~----~- 136 (505)
+..+ .....+.|.|.. .+|.+...+. ...+.+|+.++|.|.+.+. |+ +.+.|+++|..+..+.. .
T Consensus 91 ~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 168 (213)
T 3mj8_L 91 DGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPP--SSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK 168 (213)
T ss_dssp ETTTTEEEEBCCEEEEEECSCCBCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred cCCcceeEEcCceEEEEeCCCCCCCeEEccCC--CcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc
Confidence 8877 234457777773 2444443331 1224479999999999885 33 49999999998864210 0
Q ss_pred ---EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 137 ---KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 137 ---~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
.......|.|.++..+|.|.|+|.|.|..+.....
T Consensus 169 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3mj8_L 169 SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS 206 (213)
T ss_dssp ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence 11112348899999999999999999987554443
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-20 Score=167.93 Aligned_cols=172 Identities=18% Similarity=0.250 Sum_probs=127.6
Q ss_pred CCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceE--ee
Q psy14886 2 DNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY--SS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~--~~ 78 (505)
.+|+.+.|.|.+ .+.|.+.|+|+|++.++........ .......+.|.|..++ .+|+|.|+|.|.|..+... ..
T Consensus 127 ~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~--~~~~~~~s~l~i~~~~-~~d~g~Y~C~a~n~~~~~~~~~~ 203 (308)
T 4fom_A 127 GGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFP--NETATIISQYKLFPTR-FARGRRITCVVKHPALEKDIRYS 203 (308)
T ss_dssp TCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECT--TSCEEEEEEEEECCCG-GGTTCEEEEEEECTTCSSCEEEE
T ss_pred cCCceEEEEEEecCCcCCceEEEEECCcccccccceee--eecccccccceEEeee-ecCCccEEEEEEccCCCCceEEe
Confidence 468899999986 5789999999999987753211110 1111223579999999 9999999999999776543 34
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCC-CEEEcCCCCCCCEE
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGI 156 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~-~l~i~~v~~~d~G~ 156 (505)
+.|.|.. +|.+...+. ....+.+|+.++|.|.+.|.|.+ .+.|++++..+.... ...++ .|.|.+++.+|+|.
T Consensus 204 ~~l~V~~-~P~~~~~~~-~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~---~~~~~~~l~i~~v~~~d~G~ 278 (308)
T 4fom_A 204 FILDIQY-APEVSVTGY-DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL---LASDNTLHFVHPLTFNYSGV 278 (308)
T ss_dssp EECCCCE-EEEECCBCC-CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC---BCSTTEEECCSCCCSCCCSE
T ss_pred EEEEEec-CCeeEEccc-ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE---EEcCCeEEEECCCChhhCEE
Confidence 5566664 555554442 33457789999999999999888 799999987765432 11233 35678899999999
Q ss_pred EEEEEEcCCCceeeeEEEEEEeCCe
Q psy14886 157 YSCTATNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 157 y~C~~~~~~g~~~~~~~l~v~~~p~ 181 (505)
|+|.|.|..|.....+.|.|.++|.
T Consensus 279 Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 279 YICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp EEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 9999999999999999999987764
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-19 Score=148.61 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=110.0
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcC---CCCC-----C---CCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNS---ETLP-----L---EDQDRYFI-QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~---~~~~-----~---~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
.+|++++|.|.+.+ .+.+.|.|+|++..+.. .... . ...+|+.+ .+++|.|.+++ .+|+|.|+|.+
T Consensus 11 ~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~-~~D~G~Y~C~~ 89 (193)
T 2if7_A 11 ILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLK-MEDTGSYRAQI 89 (193)
T ss_dssp ETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCC-GGGCEEEEEEE
T ss_pred EecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCC-cccCceEEEEE
Confidence 58999999999975 45579999999875521 0000 0 01135544 46789999999 99999999999
Q ss_pred EcccCceEeeEEEEEEecCC--CccCCCCCceEEeeCCC-eEEEEeecCCC-CCCeEEEEECCEEecCCCcEEEeeCCCE
Q psy14886 69 KNQLKTRYSSAQLRVLTLKP--SFKKRPLESETYAGEGG-NVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNL 144 (505)
Q Consensus 69 ~~~~~~~~~~~~l~v~~~~p--~~~~~~~~~~~~v~~g~-~v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~~~~~l 144 (505)
.+..+.....+.|.|...++ .+.... .....|. .++|.|.+.+. |.+.+.|+++|..+.. ...|
T Consensus 90 ~~~~~~~~~~~~L~V~~~~~~p~i~~~~----~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~--------~~~l 157 (193)
T 2if7_A 90 STKTSAKLSSYTLRILRQLRNIQVTNHS----QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS--------QPNL 157 (193)
T ss_dssp ECSSCEEEEEEEEEEECCCEEEEEEECC----C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------SSEE
T ss_pred EecCCCeEEEEEEEEEccCCCCeEecCc----eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------CCeE
Confidence 98887766677888875322 222111 1133465 89999999885 5789999999987643 2346
Q ss_pred EEcCCCCC-CCEEEEEEEEcCCCceeee
Q psy14886 145 LISPVSRD-DSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 145 ~i~~v~~~-d~G~y~C~~~~~~g~~~~~ 171 (505)
.|...... |.|.|+|.|.|..|..+..
T Consensus 158 ~i~~~~~~~d~G~Y~C~a~N~~g~~s~~ 185 (193)
T 2if7_A 158 TVSWDPRISSEQDYTCIAENAVSNLSFS 185 (193)
T ss_dssp EEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred EEEeccCcCCCCcEEEEEECCCCccccc
Confidence 66544454 8999999999998876443
|
| >2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=138.93 Aligned_cols=121 Identities=23% Similarity=0.211 Sum_probs=102.5
Q ss_pred EEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEe
Q psy14886 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 439 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~ 439 (505)
+|.|.|..|.|.+|... .+.|.+..|+.+|.++.+...+.++|.|.|++|.....++.|.+|+|+|+..+...|... .
T Consensus 3 ~V~A~n~~G~g~~s~~~-~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~-~ 80 (124)
T 2ed9_A 3 SGSSGNRYGPGVSTDDI-TVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMET-L 80 (124)
T ss_dssp SCCCCCCCCCCCCCCCC-CCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEE-E
T ss_pred eEEEEeCCccCCCCCCE-EEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEE-e
Confidence 57899999999887765 778888888889999999888899999999996544489999999999999886666533 1
Q ss_pred eecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 440 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 440 ~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
. ...+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.++|..
T Consensus 81 ~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~e 123 (124)
T 2ed9_A 81 E----PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123 (124)
T ss_dssp C----SSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECCC
T ss_pred c----CCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence 1 234678899999999999999999999999999999998864
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=158.95 Aligned_cols=258 Identities=14% Similarity=0.191 Sum_probs=162.3
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+|.+...+ ....+.+|+++.|.|.+.+. +.|++++.. ....... +.|.|.+++..|+|.|+|.+.|
T Consensus 4 ~P~i~~~~--~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 72 (292)
T 4dkd_C 4 IPVIEPSV--PELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPG 72 (292)
T ss_dssp CCEEESCC--SSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC
T ss_pred CceecCCC--CeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEEcc
Confidence 55555544 45679999999999999874 999976532 1122222 3699999999999999999999
Q ss_pred CCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC-CEEecCCCCCcccCCeeeecCCe
Q psy14886 164 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPNINIDGGL 242 (505)
Q Consensus 164 ~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (505)
..+.....+.|.|..+|......+....+..|+.+.|.|.+.+ +.+...+.|+++ +..+.... .........
T Consensus 73 ~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~------~~~~~~~~~ 145 (292)
T 4dkd_C 73 DPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHT------NYSFSPWHG 145 (292)
T ss_dssp ----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSC------CEECCSSSC
T ss_pred CCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCC------cccccCCce
Confidence 8888777888888877765555566778899999999999987 442245679886 43332211 112223445
Q ss_pred EEEecCCCCCCEEEEEEEEecCCcEE-EEEEEEEcCCCC-CCCceEEE-----EEeCCeEEEEeecCCCCCCCCceEEEE
Q psy14886 243 LEITNASFADAGEYECVVKSTVGKIS-TKTTVIVEGPPG-LPGGVQVV-----EVHKTSATIQWTDGATNGRPITHYKII 315 (505)
Q Consensus 243 l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~v~~~p~-~p~~~~~~-----~~~~~~v~l~w~~~~~~~~~i~~y~v~ 315 (505)
|.|..+..+|.|.|+|.+.|..|... ..+.|.|...+. +|. +... ...+..+.|.|... +.+. .+.+.
T Consensus 146 L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~-i~~~~~~~~~~~g~~v~l~C~~~---~~~~-~~~~~ 220 (292)
T 4dkd_C 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA-LTLVPAELVRIRGEAAQIVCSAS---SVDV-NFDVF 220 (292)
T ss_dssp CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE-EEEESSCBCCCSSSCEEEEEEEE---ESSS-CCEEE
T ss_pred EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe-EEccCCceeEecCCCEEEEEEec---CCCC-ceEEE
Confidence 99999999999999999998877654 377888875332 221 2221 13566788888743 1111 12222
Q ss_pred EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 316 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
+...+...-........ ...+.....+.+.+ +...+.+.|+|.|.|..|...
T Consensus 221 w~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~~ 272 (292)
T 4dkd_C 221 LQHNNTKLAIPQQSDFH---NNRYQKVLTLNLDQ-VDFQHAGNYSCVASNVQGKHS 272 (292)
T ss_dssp CCBSSCCCCCCBEEEEE---TTEEEEEEEEEESS-CCTTSCEEEEEEEECSSCEEE
T ss_pred EeCCCcccccCccceec---cceeeeEEEEEECc-cChhcCeEEEEEEecCCCCce
Confidence 22221110000000000 00011112344444 899999999999999999764
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-21 Score=176.46 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=146.9
Q ss_pred CCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEE
Q psy14886 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKI 138 (505)
Q Consensus 60 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~ 138 (505)
+.|.|+|.+.+.... +.+.+ ..+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+... .....
T Consensus 136 ~~~~~~C~~~~~l~~----l~~~~-c~~P~i~~~~--~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~ 208 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAH----MPNAS-CGVPTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG 208 (347)
T ss_dssp GGGCCCCSSSSCSSC----CCCTT-CCCCEEEEEC--CSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCC
T ss_pred cccCCCCCCChHHhc----CCccc-CCCCceeccC--CceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccccee
Confidence 568899987652211 11111 1245444433 3345889999999999999999999999988654321 11112
Q ss_pred eeCCCEEEcCCCCCCCE-EEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEE
Q psy14886 139 FENGNLLISPVSRDDSG-IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 217 (505)
Q Consensus 139 ~~~~~l~i~~v~~~d~G-~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~ 217 (505)
...++|.|.++...|+| .|+|.|.|..|.....+.|.|..+|.+ . ......|+.+.|.|.+.+.|.| .+.|+
T Consensus 209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~----~~~~~~g~~v~l~C~~~g~P~p--~i~W~ 281 (347)
T 2ifg_A 209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-Q----LHTAVEMHHWCIPFSVDGQPAP--SLRWL 281 (347)
T ss_dssp SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE-E----ECCCEESSSEEEEEEEEEESCC--EEEEE
T ss_pred cccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-e----eccCccCceEEEEEEeeecCCC--cEEEE
Confidence 23456999999999999 999999999988877788888666664 1 1224578999999999999776 56799
Q ss_pred eCCEEecCCCCCcccCC----eeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 218 HNGVRIGNMDLNELETP----NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 218 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
++|..+........... ......+.|.|..+..+|.|.|+|.|.|..|..+..+.+.|..+|
T Consensus 282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 99998875322110000 001124569999999999999999999999999999998887665
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=155.13 Aligned_cols=165 Identities=18% Similarity=0.281 Sum_probs=112.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc---CC--CCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN---SE--TLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~---~~--~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.|.|+|++ ..+. .. ........|+... + .+|.|.+++ .+|+|.|+|.+.
T Consensus 13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 91 (213)
T 3d9a_L 13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE-TEDFGMYFCQQS 91 (213)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred EeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCC-hhhCEEEEEeee
Confidence 468999999999998888889999853 2110 00 0000123566553 2 389999999 999999999999
Q ss_pred cccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCCCcEEE------
Q psy14886 70 NQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSGGRRKI------ 138 (505)
Q Consensus 70 ~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~~~~~~------ 138 (505)
+..+.... .+.|.|.. .+|.+...+.. ..+.+|+.++|.|.+.+ .|.+ .+.|+++|..+........
T Consensus 92 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~ 169 (213)
T 3d9a_L 92 NSWPYTFGGGTKLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK 169 (213)
T ss_dssp SSSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTT
T ss_pred cCCcceeCCCEEEEEecCCCCceeEeECCC--hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCC
Confidence 87765433 34666653 13444332211 12347899999999987 5555 8999999998865411111
Q ss_pred ----eeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 139 ----FENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 139 ----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
.....|.|.++..+|.|.|+|.|.|.....
T Consensus 170 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 170 DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp TCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 011269999999999999999999976554
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=149.70 Aligned_cols=169 Identities=14% Similarity=0.182 Sum_probs=113.6
Q ss_pred CCCCCceEEEEEEe----ccCCCeEEEEECCEECcCCCC-----CCCCCCcEEE---ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAF----GVPDVTYSWFRNGELLNSETL-----PLEDQDRYFI---QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~----~~p~~~~~W~~~~~~l~~~~~-----~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.+|++++|.|.+. +.|.+.+.|++++..+..... .....+|... .+.+|.|.+++ .+|+|.|+|.+
T Consensus 6 v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~ 84 (201)
T 1dr9_A 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALR-PSDEGTYECVV 84 (201)
T ss_dssp EETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCC-GGGCEEEEEEE
T ss_pred EEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEeccc-chhCeEEEEEE
Confidence 35899999999995 346689999999987631000 0001123332 24689999999 99999999999
Q ss_pred EcccCceE-----eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEe-eC
Q psy14886 69 KNQLKTRY-----SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIF-EN 141 (505)
Q Consensus 69 ~~~~~~~~-----~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~-~~ 141 (505)
.+..+... ..+.|.|...++ .+.........|+.+.|.|.+. +.|.|.|.|+++|..+......... .+
T Consensus 85 ~~~~g~~~~~~~~~~~~l~V~~~~~----~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~ 160 (201)
T 1dr9_A 85 LKYEKDAFKREHLAEVTLSVKADFP----TPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE 160 (201)
T ss_dssp EECCTTSCEEEEEEEEEEEEECCCC----CCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTT
T ss_pred EcCCCCccccccccEEEEEEcCCCC----CCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCC
Confidence 99765432 356666664221 1101111235688999999994 8899999999999988754332222 22
Q ss_pred -CCEE---EcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 142 -GNLL---ISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 142 -~~l~---i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
+.+. +..+...|.|.|+|.|.|..+.....+.+
T Consensus 161 ~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 161 TELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp TCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred CcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 2222 23455689999999999999887765543
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=151.49 Aligned_cols=232 Identities=10% Similarity=0.047 Sum_probs=147.6
Q ss_pred eEEEecCCCCCCEEEEEEEE---ecCCcEEEEEEEEE----cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEE
Q psy14886 242 LLEITNASFADAGEYECVVK---STVGKISTKTTVIV----EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI 314 (505)
Q Consensus 242 ~l~i~~~~~~~~g~y~C~~~---n~~g~~~~~~~l~v----~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v 314 (505)
...+..+.+.....+...|. +..|..+..+...+ ..+|.+|.++.+.......+.++|+++.+.+ .+..|.|
T Consensus 54 ~~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~~-~~~~Y~l 132 (314)
T 3bpo_C 54 TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTS-PDTNYTL 132 (314)
T ss_dssp SEEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC----CCCCEEE
T ss_pred cEEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCCC-CCccEEE
Confidence 34455556666666666663 33333332232222 3467788889998888999999999987553 4788999
Q ss_pred EEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc----CCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCC
Q psy14886 315 IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV----PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390 (505)
Q Consensus 315 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P 390 (505)
.|+..+...|..+..... ........+.. +. ..+.|.|+|.|.|..|.+..+.. .+.+.....+.||
T Consensus 133 ~y~~~~~~~~~~C~~~~~------~~~~~~c~~~~-~~~~~~~~~~y~~~V~a~n~~G~~~~~~~--~~~~~~~v~P~pP 203 (314)
T 3bpo_C 133 YYWHRSLEKIHQCENIFR------EGQYFGCSFDL-TKVKDSSFEQHSVQIMVKDNAGKIKPSFN--IVPLTSRVKPDPP 203 (314)
T ss_dssp EEEESSCSSCEECCCEEE------ETTEEEEEEEC-CC--------CCEEEEEEETTSCSCCEEE--EECSSSSEECCCC
T ss_pred EEEeCCCCccccCcCeec------CCCeEEEEECC-CCccccceeEEEEEEEEEcCCCceecccE--EEehhheEeeCCC
Confidence 998765555555432110 00112233332 44 37899999999999998864432 4555555667899
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEee--------e-cCceeeEEEEcCCccceeeE
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--------E-YGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~l~~L~p~~~Y 461 (505)
.++++. ...+++.|+|++|. ..++.++.|.|+|+..+...|....+. . ......+.+.|.+|.|++.|
T Consensus 204 ~~l~~~-~~~~~l~lsW~~P~--~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y 280 (314)
T 3bpo_C 204 HIKNLS-FHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLN 280 (314)
T ss_dssp EEEEEE-EETTEEEEEEECCT--TCCGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCE
T ss_pred CEEEEE-EcCCcEEEEEeCCC--ccCCceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEE
Confidence 999987 66789999999953 334457899999999887788754331 0 01124578899999999999
Q ss_pred EEEEEEecC------CC-CCCCCceEEEeecc
Q psy14886 462 EVKVQAIND------VG-PGPESEVVTIWHDP 486 (505)
Q Consensus 462 ~~~v~a~n~------~G-~g~~s~~~~~~t~p 486 (505)
.|+|+|.+. .| .|++|+.+.+.+.+
T Consensus 281 ~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~~ 312 (314)
T 3bpo_C 281 TVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKR 312 (314)
T ss_dssp EEEEEEEECTTTSCCCCCCCCCCCCEEESCCC
T ss_pred EEEEEeeecccccCCCCeeCCCCCCeEecccC
Confidence 999999985 55 37778777765543
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=142.54 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=110.4
Q ss_pred CCCCceEEEEEEe--ccCCCeEEEEE--CCEECcCCCC---CCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 2 DNQADLTWTCEAF--GVPDVTYSWFR--NGELLNSETL---PLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~--~~p~~~~~W~~--~~~~l~~~~~---~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
.+|++++|.|... +.+.+.|.|+| ++..|..... .....+|+.+ .+++|.|.+++ .+|+|.|+|.+.|..|
T Consensus 12 ~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~-~~DsG~Y~c~~~n~~g 90 (182)
T 1hnf_A 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK-TDDQDIYKVSIYDTKG 90 (182)
T ss_dssp ETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCC-GGGCEEEEEEEEETTS
T ss_pred ecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCC-hhhCEEEEEEEEeCCC
Confidence 4799999999542 24568999999 8877621000 0012456655 56799999999 9999999999999887
Q ss_pred ceEe--eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCC
Q psy14886 74 TRYS--SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR 151 (505)
Q Consensus 74 ~~~~--~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~ 151 (505)
.... .+.|.|....+ .+.+.. .+..++|.|.+.+.|.+.+.|+++|..+ .. ....|.+.. ..
T Consensus 91 ~~~~~~~~~L~V~~~~~-------~P~i~~-~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~------~~~~i~~~~-~~ 154 (182)
T 1hnf_A 91 KNVLEKIFDLKIQERVS-------KPKISW-TCINTTLTCEVMNGTDPELNLYQDGKHL-KL------SQRVITHKW-TT 154 (182)
T ss_dssp CEEEEEEEEEEEECCCC-------CCEEEE-ETTTTEEEEECSSCSSCEEEEEESSCEE-EE------ESSCEEEEC-CS
T ss_pred ceeEEEEEEEEEcCcCC-------CCEEEE-ccCcEEEEeEccCCCCCEEEEEECCEEC-CC------CCcEEEEec-cc
Confidence 7543 45677764211 122222 3447899999999888999999999877 11 233454433 47
Q ss_pred CCCEEEEEEEEcCCCceeeeEEE
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
.|.|.|+|.|.|..+.......+
T Consensus 155 ~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 155 SLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEE
T ss_pred CCCcEEEEEEEeCCCCcEEccee
Confidence 89999999999999987776554
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=154.64 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=111.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECcC----C-----CCCCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLNS----E-----TLPLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~~----~-----~~~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+.| .+.|.|+|+ +..+.. . .......+|+.+.. .+|.|.+++ .+|+
T Consensus 12 v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~Ds 90 (257)
T 1f3r_B 12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ-TDDT 90 (257)
T ss_dssp ECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC-TTCC
T ss_pred ccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC-cccC
Confidence 46899999999999875 689999995 221110 0 00001235676532 389999999 9999
Q ss_pred eEEEEEEEcccC-------ce--EeeEEEEEEecC------------CCccCCCCCceEEeeCCCeEEEEeecCCCCCCe
Q psy14886 62 AMYQCRAKNQLK-------TR--YSSAQLRVLTLK------------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120 (505)
Q Consensus 62 G~Y~C~~~~~~~-------~~--~~~~~l~v~~~~------------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~ 120 (505)
|.|+|.+.+..| .. ...+.|.|...+ ....+...+....+.+|++++|.|.+.+.+.+.
T Consensus 91 G~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 170 (257)
T 1f3r_B 91 GTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNY 170 (257)
T ss_dssp EEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTC
T ss_pred EEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCc
Confidence 999999998753 11 124567776422 011111112445688999999999999988889
Q ss_pred EEEEE--CCEEec------------CCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 121 FVWKK--DGNIIG------------SGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 121 i~W~~--~g~~~~------------~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+.|++ +|..+. ...++.... ..+|.|.++..+|+|.|+|.|.|..
T Consensus 171 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 171 LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred EEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 99999 554321 123443322 2269999999999999999999864
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-18 Score=151.98 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=151.0
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEE
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 271 (505)
+..|.+++|.|.+.... .+.|.+++..... ..+++|.|..+...|+|.|+|.+ .|......
T Consensus 18 ~~~G~~v~l~C~~~~~~----~i~W~~~~~~~~~------------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~ 78 (306)
T 3d85_D 18 DAPGEMVVLTCDTPEED----GITWTLDQSSEVL------------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHS 78 (306)
T ss_dssp SCCCEEEEEECSSSCCS----SCEEEETTCCCCC------------EESSEEEEEECSGGGCEEEEEEE---TTEEEEEE
T ss_pred CccCCcEEEECCCCCCC----cCEEEECCccccC------------CCCCEEEEEecCcCCCceEEEee---CCcccceE
Confidence 34789999999887322 4569998764321 14678999999989999999999 35555454
Q ss_pred EEEEc-------------CCCCCCC--ceEEEEEeCC-eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccce
Q psy14886 272 TVIVE-------------GPPGLPG--GVQVVEVHKT-SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335 (505)
Q Consensus 272 ~l~v~-------------~~p~~p~--~~~~~~~~~~-~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~ 335 (505)
.+.|. .++.||. .+.+...... .++++|.+..+.+. ...|...+ ......|..+........
T Consensus 79 ~l~v~~~~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~~~l-~~~~~~~r-~~~~~~~~~C~~~~~~~~ 156 (306)
T 3d85_D 79 LLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL-TFSVKSSR-GSSDPQGVTCGAATLSAE 156 (306)
T ss_dssp EEEEEEEETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCCSSE-EEEEEEEE-CSSSCEEEEECCCEEEEE
T ss_pred EEEEEeccCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCCCce-eEEEEEEe-cCCCCcceECCCCCCCcc
Confidence 44443 2233332 4555443433 89999998765322 22343332 111223444322111001
Q ss_pred eeeecCce--eeEE--eeeccCC----ceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc-ccccEEEE
Q psy14886 336 VDRYTGRK--EASI--ENVLVPW----STYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG-KIGDLSIS 406 (505)
Q Consensus 336 ~~~~~~~~--~~~~--~~~L~~~----~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~-~~~~v~l~ 406 (505)
...+.+.. .... ...+.++ ..|.|+|.|.|+.|....+. .+.......|.||.++.+... ....+.|+
T Consensus 157 ~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~---~f~~~~iVkPdPP~~l~~~~~~~~~~l~vs 233 (306)
T 3d85_D 157 RVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTS---SFFIRDIIKPDPPKNLQLKPLKNSRQVEVS 233 (306)
T ss_dssp EEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEE---EECHHHHBCCCCCEEEEEEEC----CEEEE
T ss_pred ceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccce---EEEehhcEecCCCceEEEEEecCCCcEEEE
Confidence 11111111 1110 1114444 48999999999999754331 333334455668999999863 44899999
Q ss_pred EEeCCccccCCC----CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 407 WEPLPREKQNAP----NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 407 W~~~~~~~~~~~----i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
|++|+ ..+.+ .+.|.|+|+..+...|....... .+.+.|. +++.|.|+|+|.|..|.|.+|++...
T Consensus 234 W~~P~--~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~~-----~ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~~ 303 (306)
T 3d85_D 234 WEYPD--TWSTPHSYFSLTFCVQVQGKSKREKKDRVFTD-----KTSATVI---CRKNASISVRAQDRYYSSSWSEWASV 303 (306)
T ss_dssp EECCT--TSCSCTTTSCEEEEEEEECC------CEEEES-----SSEEEEC---CCSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred EcCCC--CCcCCCceeeEEEEEEEEECCCCccEEEeecc-----ccEEEEe---CCCeEEEEEEeccCCCCCCCCCCCCC
Confidence 99943 33333 37999999988865565442221 1345554 49999999999999999999998764
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=141.97 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=120.3
Q ss_pred EEeeCCCeEEEEeecCCCCCC--eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
..+.+|+++.|.|.+.+.|.+ .+.|+++|..+....... ....|.|. ..+|+|.|+|.+.| .....+.|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~--~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~l~V 80 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG--QKTEFKVD--SDDQWGEYSCVFLP---EPMGTANIQL 80 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC--SEEEEEEC--GGGCCEEEEEEEES---TTSCEEEEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC--CcEEEEEe--chhhCeEEEEEEEC---CcCcEEEEEE
Confidence 457899999999998887666 999999999886543211 11235555 58899999999998 2335677888
Q ss_pred EeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe---CCEEecCCCCCcccCCeeee--cCCeEEEecCC-C
Q psy14886 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH---NGVRIGNMDLNELETPNINI--DGGLLEITNAS-F 250 (505)
Q Consensus 177 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~-~ 250 (505)
..+|.+... +....+..|+.+.|.|.+.+.|. ...+.|++ ++........ ........ ....|.|..+. .
T Consensus 81 ~~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~-~~~i~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~ 156 (184)
T 3b5h_A 81 HGPPRVKAV-KSSEHINEGETAMLVCKSESVPP-VTDWAWYKITDSEDKALMNGS--ESRFFVSSSQGRSELHIENLNME 156 (184)
T ss_dssp CCSCCCEES-CSEEEECTTSCEEEEEECCCSSC-CCEEEEEECCSSSCEECCTTG--GGTEEEEEETTEEEEEECSCCTT
T ss_pred ecCCceeec-CCCcEEcCCCcEEEEEEECCCCC-CCeEEEEEcCCCCCEEeecCC--CCEEEEEecCCeeEEEEeecccc
Confidence 777765543 45567889999999999998872 23667999 4444322110 01111111 12489999999 8
Q ss_pred CCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 251 ADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 251 ~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
+|.|.|+|.|.|..|.....+.|.|..
T Consensus 157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 157 ADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp TSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred ccCceEEEEEEeCCCcceEEEEEEEec
Confidence 999999999999999998888888763
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-19 Score=152.42 Aligned_cols=164 Identities=18% Similarity=0.306 Sum_probs=111.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc---C--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN---S--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~---~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.|.|+|++ ..+. . .........|+... ..+|.|.+++ .+|+|.|+|.+.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 90 (210)
T 1lk3_L 12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVE-ADDTAIYFCQQS 90 (210)
T ss_dssp ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred EcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCC-HHHCeEEEEEEE
Confidence 468999999999998888889999942 2220 0 00000123566543 2389999999 999999999999
Q ss_pred cccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCCCcEE--E--ee
Q psy14886 70 NQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK--I--FE 140 (505)
Q Consensus 70 ~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~~~~~--~--~~ 140 (505)
+..+.... ...|.|.. .+|.+...+.. ..+.+|+.++|.|.+.|. |.+ .+.|+++|..+....... . ..
T Consensus 91 ~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~ 168 (210)
T 1lk3_L 91 WNGPLTFGAGTKLELKRADAAPTVSIFPPS--TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSK 168 (210)
T ss_dssp SSSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTT
T ss_pred cCCCceeCCCEEEEEcCCCcCCeEEEECCc--hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCC
Confidence 87665433 34666653 23444332211 123479999999999874 543 899999999876541111 1 11
Q ss_pred CC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 141 NG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 141 ~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
++ .|.|.++..+|+|.|+|.|.|....
T Consensus 169 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 169 DSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp TCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 22 5899999999999999999987654
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-19 Score=148.98 Aligned_cols=159 Identities=13% Similarity=0.244 Sum_probs=113.6
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE--eeCCCEEEcCCCCCCCEEEEEEEEcCCCc--eeeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--FENGNLLISPVSRDDSGIYSCTATNVHGM--DESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~--~~~~~l~i~~v~~~d~G~y~C~~~~~~g~--~~~~~~l~ 175 (505)
.+.+|++++|.|.+.+ +.+.+.|+|+|..+........ ...+.|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence 6889999999999988 6779999999987643211111 12346999999999999999999998873 34457777
Q ss_pred EEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCC
Q psy14886 176 VLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 253 (505)
Q Consensus 176 v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 253 (505)
|... ++.+...+ ...+..|+.++|.|.+.+.+ ..+.|++++..+....... ..........|.|.++..+|.
T Consensus 94 V~~~~~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~---~~~~w~k~g~~~~~~~~~~--~~~~~~~~~~L~i~~v~~~d~ 167 (196)
T 3p2t_A 94 MTGAYSKPTLSALP-SPLVTSGKSVTLLCQSRSPM---DTFLLCKERAAHPLLCLRS--EHGAQQHQAEFPMSPVTSVHG 167 (196)
T ss_dssp EECSSCCCEEEEES-CSEECTTCCEEEEEEEEEEE---EEEEEEETTCCCGGGSEEE--EEEEEEEEEEEEECSCCGGGC
T ss_pred ecCCCCCCEEEeCC-cceecCCCeEEEEEecCCCC---CEEEEEeCCCcccceeecc--cccccCcceEEEeCCCcccCC
Confidence 7642 22222222 23678899999999998743 3678999987654321000 001122456799999999999
Q ss_pred EEEEEEEEecCC
Q psy14886 254 GEYECVVKSTVG 265 (505)
Q Consensus 254 g~y~C~~~n~~g 265 (505)
|.|+|.|.|..+
T Consensus 168 G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 168 GTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEEECGGG
T ss_pred CeEEEEEEcCCC
Confidence 999999999876
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=151.54 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=115.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc--eEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT--RYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~--~~~~ 78 (505)
|.+|++++|.|.+.+ +...+.|+|++..+..... .......+..|.|.+++ .+|+|.|+|.+.+..+. ....
T Consensus 18 v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~----~~~~~~~~~~L~I~~v~-~~DsG~Y~C~~~~~~~~s~~S~~ 91 (242)
T 1p6f_A 18 VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP----KPPERINKVKFYIPDMN-SRMAGQYSCIYRVGELWSEPSNL 91 (242)
T ss_dssp EETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC----SSCTTCCEEEEEECSCC-GGGCEEEEEEEEETTEECCCCCC
T ss_pred cCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc----cccCCcceeEEEecCCC-cccCeEEEEEEecCCccccCCcc
Confidence 468999999999865 4578999999987642100 00001134679999999 99999999999875432 2334
Q ss_pred EEEEEEec--CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEE
Q psy14886 79 AQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156 (505)
Q Consensus 79 ~~l~v~~~--~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 156 (505)
+.|.|... +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+... ......++.|.|.+++.+|+|.
T Consensus 92 ~~L~V~~~~~~P~i~~~p---~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~-~~~~~~~~~l~I~~v~~~d~G~ 166 (242)
T 1p6f_A 92 LDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGT 166 (242)
T ss_dssp EEEEEECCSCCCEEEEES---CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE-EEECSSEEEEEEEECCGGGCEE
T ss_pred eEEEeecccCCCceEccC---CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc-ccCCCceEEEEeCCCccccCEE
Confidence 66777642 34343322 2358899999999998765 4599999998755421 1111223469999999999999
Q ss_pred EEEEEEcCC---CceeeeEEEEEEeC
Q psy14886 157 YSCTATNVH---GMDESKGRLIVLHG 179 (505)
Q Consensus 157 y~C~~~~~~---g~~~~~~~l~v~~~ 179 (505)
|+|.+.+.. ...+..+.|.|...
T Consensus 167 Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 167 YRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred EEEEEECCCCcccCCCCCEEEEEecc
Confidence 999999864 23334477777653
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=147.56 Aligned_cols=160 Identities=14% Similarity=0.229 Sum_probs=109.7
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC--CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC-C--ceeeeEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVH-G--MDESKGRL 174 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~-g--~~~~~~~l 174 (505)
.+.+|++++|.|.+.+.|. .+.|+|+|..+... ........+.|.|.++..+|+|.|+|.+.|.. | .....+.|
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l 93 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL 93 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEE
Confidence 6889999999999988875 79999999866321 11111234679999999999999999999977 4 33455778
Q ss_pred EEEeCC--eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCC
Q psy14886 175 IVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252 (505)
Q Consensus 175 ~v~~~p--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 252 (505)
.|...+ +.+.. .....+..|+.+.|.|.+.+. .+ .+.|++++..+........ ..........|.|.++..+|
T Consensus 94 ~V~~~~~~p~i~~-~~~~~v~~G~~v~L~C~~~~~-~~--~v~W~k~g~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D 168 (198)
T 1ugn_A 94 VVTGAYIKPTLSA-QPSPVVNSGGNVTLQCDSQVA-FD--GFILCKEGEDEHPQCLNSQ-PHARGSSRAIFSVGPVSPSR 168 (198)
T ss_dssp EEECSSCCCEEEE-ESCSEEETTCCEEEEEECSSC-CS--EEEEEEC------CEEEC-------CCEEEEEECCCCTTS
T ss_pred EEcccccCCcccc-CCccccCCCCcEEEEEecCCC-Cc--EEEEEECCCccCCcccccc-ccCCCcceeEEEecccCccc
Confidence 887622 22222 223578899999999999887 33 6779999887643210000 00000123689999999999
Q ss_pred CEEEEEEEEecCC
Q psy14886 253 AGEYECVVKSTVG 265 (505)
Q Consensus 253 ~g~y~C~~~n~~g 265 (505)
.|.|+|.|.|..+
T Consensus 169 ~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 169 RWWYRCYAYDSNS 181 (198)
T ss_dssp CEEEEEEEECTTS
T ss_pred CeEEEEEEEeCCC
Confidence 9999999999876
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=137.98 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=114.0
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEec---CC---------------CcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIG---SG---------------GRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~---~~---------------~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|.+.+ .+.+.|.|++++..+. .. .+..+..+++|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y 85 (193)
T 2if7_A 6 LMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSY 85 (193)
T ss_dssp EEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEE
T ss_pred eEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceE
Confidence 4567899999999999875 3456999999886542 10 244444567899999999999999
Q ss_pred EEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeec-cEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCee
Q psy14886 158 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR-NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236 (505)
Q Consensus 158 ~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 236 (505)
+|.+.+..+.....+.|.|..++..............|. .+.|.|.+.+.+ +...+.|++++..+..
T Consensus 86 ~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~-p~p~i~W~~~g~~l~~----------- 153 (193)
T 2if7_A 86 RAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDAD-DNVSFRWEALGNTLSS----------- 153 (193)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCC-TTCEEEEEETTEEEES-----------
T ss_pred EEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCC-CceEEEEEeCCEEcCC-----------
Confidence 999999888777778888876543222111111223454 799999999853 2347789999876532
Q ss_pred eecCCeEEEecCCCC-CCEEEEEEEEecCCcEEEEEE
Q psy14886 237 NIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTT 272 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~-~~g~y~C~~~n~~g~~~~~~~ 272 (505)
+..|.|.....+ |.|.|+|.|.|..|..+..+.
T Consensus 154 ---~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 154 ---QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp ---SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred ---CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 234666544444 899999999999998765543
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=163.47 Aligned_cols=227 Identities=11% Similarity=0.025 Sum_probs=86.6
Q ss_pred cCCeEEEecCCCCCCEEEEEEEEec--CCcEEEE--EEEEEc-C-CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceE
Q psy14886 239 DGGLLEITNASFADAGEYECVVKST--VGKISTK--TTVIVE-G-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 312 (505)
Q Consensus 239 ~~~~l~i~~~~~~~~g~y~C~~~n~--~g~~~~~--~~l~v~-~-~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y 312 (505)
....+.|..+.....+.+...|.|. .|....+ ..+... . ++.+|.++.+.... .++.|+|+++. ...+|
T Consensus 161 ~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~pp~----~~~~Y 235 (414)
T 3se4_A 161 IYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTY----ANMTF 235 (414)
T ss_dssp ECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECSS----SSCEE
T ss_pred CCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECCCC----CCeEE
Confidence 3467888888887777777777774 3433322 233332 2 34567777776654 67999999864 23599
Q ss_pred EEEEEeC--------CCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCC
Q psy14886 313 KIIARTN--------WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384 (505)
Q Consensus 313 ~v~~~~~--------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~ 384 (505)
.|+|+.. +...|........ .......+..+|.++..|.|||+|.|..|.|+++... .+.+.+.
T Consensus 236 ~v~y~~~~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~-~~~t~~~ 307 (414)
T 3se4_A 236 QVQWLHAFLKRNPGNHLYKWKQIPDCEN-------VKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEI-KFDTEIQ 307 (414)
T ss_dssp EEEEEESGGGSCCCC--CCCCBCSTTTT-------BSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCE-EEETTCC
T ss_pred EEEEEehhccccccccccCceECCCccC-------CCCCEEcCCcccccCccEEEEEEEecCCCcccccccc-cccchhc
Confidence 9999864 2355654311000 0122333433599999999999999999999888664 7788888
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccc----cCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREK----QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~----~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
.+++||. +.+.. ..+++.|.|++|.... .++.+++|.|.|++.+...... .. .....+.|.+|.|++.
T Consensus 308 ~~~~pP~-l~~~~-~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~~~--~~----~~~~~~~l~~L~p~t~ 379 (414)
T 3se4_A 308 AFLLPPV-FNIRS-LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK--II----EKKTDVTVPNLKPLTV 379 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCe-EEEEE-CCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCceEE--EE----ecCCeEEeCCCCCCCe
Confidence 8889998 77764 4689999999853322 1246889999998776332111 11 1346788999999999
Q ss_pred EEEEEEEecC----CCCCCCCceEEEeecc
Q psy14886 461 YEVKVQAIND----VGPGPESEVVTIWHDP 486 (505)
Q Consensus 461 Y~~~v~a~n~----~G~g~~s~~~~~~t~p 486 (505)
|.|+|+|++. .|.|++|+.+.+.|.+
T Consensus 380 Y~~~V~A~~~~~~~~g~g~~S~~~~~~T~~ 409 (414)
T 3se4_A 380 YCVKARAHTMDEKLNKSSVFSDAVCEKTKP 409 (414)
T ss_dssp ------------------------------
T ss_pred EEEEEEEEecccccCCCCCCCCCEeEEeCC
Confidence 9999999993 6999999999888865
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=150.91 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=116.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECcC----------CCCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLNS----------ETLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~~----------~~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
|.+|++++|.|.+.+.+ .+.+.|+|.. ..+.. ........+|+.+. ..+|.|.+++ .+|
T Consensus 14 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D 92 (256)
T 3umt_A 14 VKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT-SED 92 (256)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred EcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC-ccc
Confidence 46899999999998865 6899999832 11100 00000123566553 1249999999 999
Q ss_pred CeEEEEEEEcc----cCceEeeEEEEEEec---------------CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeE
Q psy14886 61 PAMYQCRAKNQ----LKTRYSSAQLRVLTL---------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121 (505)
Q Consensus 61 ~G~Y~C~~~~~----~~~~~~~~~l~v~~~---------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i 121 (505)
+|.|.|.+.+. .+.....+.|.|... ++.+...+ ....+.+|++++|.|.+.+.+.+.+
T Consensus 93 sG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~v~~G~~v~L~C~~~~~~~~~v 170 (256)
T 3umt_A 93 SAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSP--SSLSASLGERVSITCRASQDIGSNL 170 (256)
T ss_dssp CEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEEC--SEEEECTTCCEEEEEEESSCCTTCE
T ss_pred CEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCC--CeEEEECCCCEEEEEEEecCCCcEE
Confidence 99999999876 222233466777642 33333332 4567899999999999999888899
Q ss_pred EEEEC--CEEec------------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEeC
Q psy14886 122 VWKKD--GNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHG 179 (505)
Q Consensus 122 ~W~~~--g~~~~------------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~ 179 (505)
.|+++ +..+. ...++.....+ +|.|.+++.+|+|.|+|.+.+........ ..|.|...
T Consensus 171 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~ 246 (256)
T 3umt_A 171 NWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA 246 (256)
T ss_dssp EEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred EEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence 99983 22111 12344433322 49999999999999999999865444333 56776543
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=150.09 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=117.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc---CCC-------CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN---SET-------LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~---~~~-------~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|.+|++++|.|.+.+.| .+.|.|+|+ +..+. ... ......+|+.+.. .+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 90 (256)
T 1nqb_A 12 VKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT-SED 90 (256)
T ss_dssp ECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC-hhh
Confidence 46899999999998865 689999994 22211 000 0001235666532 489999999 999
Q ss_pred CeEEEEEEEcccCc----e-EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-----eEEEEE--CCE
Q psy14886 61 PAMYQCRAKNQLKT----R-YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-----KFVWKK--DGN 128 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~----~-~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-----~i~W~~--~g~ 128 (505)
+|.|+|.+.+..+. . ...+.|.|.. +|.+...+ ....+.+|++++|.|.+.+.|.+ .+.|++ +|.
T Consensus 91 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-~~~v~~~p--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~ 167 (256)
T 1nqb_A 91 SAVYYCARYDYYGSSYFDYWGQGTTVTVSS-DIELTQTP--LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ 167 (256)
T ss_dssp CEEEEEEECCTTSSSSCSEECCCEEEEECC-CCCEEEEC--SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred CEEEEEEEeeccCccceeEEcCceeeeecc-cccEEecC--cEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence 99999999987552 1 1235666663 34333322 45678999999999999988764 999999 554
Q ss_pred Eec------------CCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEEEe
Q psy14886 129 IIG------------SGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH 178 (505)
Q Consensus 129 ~~~------------~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v~~ 178 (505)
.+. ...++.... ..+|.|.+++.+|+|.|+|.+.+....... ...|.|..
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 168 SPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 331 123443322 235999999999999999999875433322 25566643
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-18 Score=151.65 Aligned_cols=246 Identities=12% Similarity=0.119 Sum_probs=142.9
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC----CCEEEcCCCCCCCEEEEEEEEcCCCce---
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMD--- 168 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~~~~g~~--- 168 (505)
...+.+.+|+++.|.|.+.+. +.|++++..+. .+...... +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~ 80 (289)
T 3mjg_X 7 GPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDE 80 (289)
T ss_dssp CSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CC
T ss_pred CCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCc
Confidence 456789999999999999875 99999998763 12222222 369999999999999999999988762
Q ss_pred eeeEEEEEEeCCeeeeeCCCc---eEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEE
Q psy14886 169 ESKGRLIVLHGPSYYEQLPPK---ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI 245 (505)
Q Consensus 169 ~~~~~l~v~~~p~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 245 (505)
...+.+.|..+.......... ..+..|+.+.|.|.+. .|.+.+.|.|..++..+... .. ....+.
T Consensus 81 ~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~---------~~-~~~~~~- 148 (289)
T 3mjg_X 81 RKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVP---------YD-HQRGFS- 148 (289)
T ss_dssp CEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCC---------EE-TTTEEE-
T ss_pred EEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCcccee---------ec-CCcCee-
Confidence 233444443222221111112 5678899999999998 66667776665544433210 01 111111
Q ss_pred ecCCCCCCEEEEEEEEecCCcEE-EEEEEEEcCCCCCCCceE-----EEEEeCCeEEEEeecCCCCCCCCceEEEEEEeC
Q psy14886 246 TNASFADAGEYECVVKSTVGKIS-TKTTVIVEGPPGLPGGVQ-----VVEVHKTSATIQWTDGATNGRPITHYKIIARTN 319 (505)
Q Consensus 246 ~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~v~~~p~~p~~~~-----~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~ 319 (505)
...|.|.|+|.|.|..+... ..+.+.+... .+|. +. .....+..+.|.|... +.|...+.|.+...
T Consensus 149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~-i~~~~~~~~v~~G~~v~L~C~~~---g~p~p~v~W~~~~~ 220 (289)
T 3mjg_X 149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSIN-VSVNAVQTVVRQGENITLMCIVI---GNEVVNFEWTYPRK 220 (289)
T ss_dssp ---ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCC-CEEEESCSEEETTSCEEEEEEEE---SCSSBEEEEECTTS
T ss_pred ---eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCC-cEEeCCcceeEcCCCEEEEEEEC---CCCCcceEEEcCCc
Confidence 24688999999998776543 3356666553 2221 11 1244677888998842 23334444432111
Q ss_pred CCCC-eEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCC
Q psy14886 320 WNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 320 ~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
.... ......... .........+.+.. +...+.+.|+|.|.|..|...
T Consensus 221 ~~~~~~~~~~~~~~---~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~ 269 (289)
T 3mjg_X 221 ESGRLVEPVTDFLL---DMPYHIRSILHIPS-AELEDSGTYTCNVTESVNDHQ 269 (289)
T ss_dssp SSSCCCCCEEEESC---TTTTEEEEEEEESS-CCSSCCEEEEEEEEETTTTEE
T ss_pred cCCCcccccccccC---CcceEEEEEEEEcc-cChhhCcEEEEEeecCCCCce
Confidence 1000 000000000 00000123444444 999999999999999999765
|
| >2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=155.84 Aligned_cols=254 Identities=12% Similarity=0.125 Sum_probs=158.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....+.+|++++|.|.+. .+.|.|+++|..+... + +. ..+.|+|.++...|.|.|.|...+ +.....+.+.
T Consensus 211 ~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~-r--i~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~~l~ 282 (488)
T 2q7n_A 211 QDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI-H--LYGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGTVVF 282 (488)
T ss_dssp TTCEEESSCCCEEEECCS---SCEEEEEETTEECCCE-E--CSSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEEEEE
T ss_pred CCCEEcCCCCEEEEEECC---CCEEEEEECCEECchh-h--ccceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEEEEE
Confidence 335588999999999998 3599999999887542 1 11 123589999999998888887663 2223356777
Q ss_pred EEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCC--------CeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEec
Q psy14886 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL--------DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247 (505)
Q Consensus 176 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--------~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 247 (505)
+..+|.. +..+.+.....-.+.|.+...... .+.+.+...+......... ........+.+..
T Consensus 283 v~~pP~~----P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~-----~~~~~~~~ct~~l 353 (488)
T 2q7n_A 283 AGYPPDV----PQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIE-----GLTNETYRLGVQM 353 (488)
T ss_dssp EECCCCC----CCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSS-----CCCSSCEEEEEEC
T ss_pred eeCCCCC----CcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCcccc-----ccCCceEEEEEcC
Confidence 7665543 334444443444566665443221 2222222222111100000 0001112344443
Q ss_pred CCCCCCEEEEEEEEecCCcEEEEEEEEE--cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeE
Q psy14886 248 ASFADAGEYECVVKSTVGKISTKTTVIV--EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF 325 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g~~~~~~~l~v--~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~ 325 (505)
......+.|++.|.|..|.......+.+ ..+|.+|.++.+.....+++.|+|++|...++.+..|+|+|+..+...|.
T Consensus 354 ~~~~t~Y~f~V~A~N~~G~~~S~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~~~~~w~ 433 (488)
T 2q7n_A 354 HPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEV 433 (488)
T ss_dssp CSSCCCCEEEEEEEETTEEEEEEEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCTTSCCEE
T ss_pred CCCccEEEEEEEEEeCCCCccceEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEECCCCCce
Confidence 3334677899999999998544323322 24788999999888889999999999875566789999999988777774
Q ss_pred EeeeccccceeeeecCceee--EEeeeccCCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 326 NVSEHVIGKEVDRYTGRKEA--SIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~--~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
....... .....+ .+.+ |.|++.|.|+|+|.| .|.|.+|.++
T Consensus 434 ~~~~~~~-------~~~~~~~v~l~~-L~P~T~Y~~rVRA~~-~g~G~WS~WS 477 (488)
T 2q7n_A 434 RNATIRG-------AEDSTYHVAVDK-LNPYTAYTFRVRCSS-KTFWKWSRWS 477 (488)
T ss_dssp EEEEEEC-------CEEEEEEEEECS-CCSSCCBBCCEEEEE-SSCSSCCCCC
T ss_pred EEEEEec-------CCCcEEEEEeCC-CCCCceEEEEEEEEE-CCCCCCCCCc
Confidence 3211100 001122 4454 999999999999999 8887555554
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-18 Score=150.06 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=122.1
Q ss_pred ceEEeeCCCeEEEEeecCC---CCCCeEEEEECCEEec------------------------------CCCcEEEee--C
Q psy14886 97 SETYAGEGGNVTIFCNPEA---APKPKFVWKKDGNIIG------------------------------SGGRRKIFE--N 141 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~---~p~~~i~W~~~g~~~~------------------------------~~~~~~~~~--~ 141 (505)
..+.+.+|+++.|.|.+.+ .+.+.+.|++++.... ...+..+.. +
T Consensus 10 ~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 89 (250)
T 2fbo_J 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAA 89 (250)
T ss_dssp SEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTS
T ss_pred CceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCc
Confidence 4577899999999999876 6788999999764320 112222222 2
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCce-----eeeEEEEEEeC--Ce-eeeeCCCceEEEeeccEEEEEEeeecCCCCeE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMD-----ESKGRLIVLHG--PS-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~-----~~~~~l~v~~~--p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 213 (505)
.+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|... |+ +....+....+..|+.+.|.|.+.+.|.| .
T Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p--~ 167 (250)
T 2fbo_J 90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA--N 167 (250)
T ss_dssp CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC--E
T ss_pred ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC--e
Confidence 479999999999999999999987654 34677777654 22 22223334556679999999999998876 6
Q ss_pred EEEEeCCEEecCCCCC------------------cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC---cEEEEEE
Q psy14886 214 YIWTHNGVRIGNMDLN------------------ELETPNINIDGGLLEITNASFADAGEYECVVKSTVG---KISTKTT 272 (505)
Q Consensus 214 ~~w~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g---~~~~~~~ 272 (505)
+.|++++..+...... .............|.|..+..+|.|.|+|.|.|..| .....+.
T Consensus 168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~ 247 (250)
T 2fbo_J 168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247 (250)
T ss_dssp EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEE
T ss_pred eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEE
Confidence 7799988766432100 000111111347899999999999999999999555 4455555
Q ss_pred EE
Q psy14886 273 VI 274 (505)
Q Consensus 273 l~ 274 (505)
|.
T Consensus 248 l~ 249 (250)
T 2fbo_J 248 LK 249 (250)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-18 Score=151.96 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=127.1
Q ss_pred CCCCCCCceEEEEE-----eCCeEEEEeecCC--CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEee
Q psy14886 277 GPPGLPGGVQVVEV-----HKTSATIQWTDGA--TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 277 ~~p~~p~~~~~~~~-----~~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
.+|..|.++..... +.+++.|+|+++. +.++++.+|.|+++......+ .... ....+..
T Consensus 2 ~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~-~~~~-------------~~~~~~~ 67 (290)
T 3l5i_A 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-NYTV-------------NATKLTV 67 (290)
T ss_dssp CCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCE-EEEE-------------SSSEEEE
T ss_pred CCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCce-eEec-------------CCcEEEE
Confidence 45666666655332 2589999999844 567889999999998765432 1111 1223445
Q ss_pred eccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~ 429 (505)
|.+++.|.|+|.|.|..|.+.++.. .+......++.+|.++.+.... ++|.|.|+++. . .+.+|.|+|+..
T Consensus 68 -l~p~t~Y~~~V~A~n~~G~s~~s~~--~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~--~---~i~~Y~v~~~~~ 138 (290)
T 3l5i_A 68 -NLTNDRYLATLTVRNLVGKSDAAVL--TIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPR--E---SVKKYILEWCVL 138 (290)
T ss_dssp -EECSSCEEEEEEEEESSCBCCCEEE--EECCTTCCCCCCCEEEEEEEET-TEEEEEEECCS--S---CCCEEEEEEEEE
T ss_pred -EcCCceEEEEEEEEcCCCCCCCceE--EeecccccCCCccceeEEEeCC-CeEEEEEeCCC--C---CCCcEEEEEEEC
Confidence 9999999999999999999876632 2222223566778888877554 69999999842 2 799999999987
Q ss_pred CCC-----CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 430 NDT-----EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 430 ~~~-----~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
+.. .|.... ......+.+.+|.|++.|.|+|.|+|..|.|++ ..+...|
T Consensus 139 ~~~~~~~~~~~~~~-----~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~-~~~~~~t 192 (290)
T 3l5i_A 139 SDKAPCITDWQQED-----GTVHRTYLRGNLAESKCYLITVTPVYADGPGSP-ESIKAYL 192 (290)
T ss_dssp CSSSCCCCEEEEEE-----TTCSEEECCSCCCTTCEEEEEEEEEETTEECCC-EEEEEES
T ss_pred CCCCCCCcCeEEcc-----CCCcceEEecCcCCccEEEEEEEEEeCCccccc-EEEEeEc
Confidence 633 244332 123467788999999999999999999999995 4444444
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=146.18 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=120.2
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEE--EeeCC--CEEEcCCCCCCCEEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFENG--NLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~--~~~~~--~l~i~~v~~~d~G~y~C~~~ 162 (505)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+....... ....+ .|.|.+++.+|+|.|+|.+.
T Consensus 9 ~P~i~~~p~---~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 84 (218)
T 1uct_A 9 MPFISAKSS---PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR 84 (218)
T ss_dssp CCCEEESSC---SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred CCEEEecCC---CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence 444544442 36889999999999987 577999999886553221111 12234 79999999999999999999
Q ss_pred cCCCcee--eeEEEEEEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeee
Q psy14886 163 NVHGMDE--SKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238 (505)
Q Consensus 163 ~~~g~~~--~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 238 (505)
|..+... ..+.|.|... ++.+...+ ...+..|+.++|.|...+.+. ..+.|+++|..+... .....
T Consensus 85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~--~~~~W~k~g~~~~~~-------~~~~~ 154 (218)
T 1uct_A 85 IGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPF--DRFSLAKEGELSLPQ-------HQSGE 154 (218)
T ss_dssp ETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCC--SEEEEEETTCSSCCS-------EEECS
T ss_pred cCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCC--CEEEEEECCCccccc-------ccCCC
Confidence 9766433 3467777652 22232223 456789999999996655444 467899998765431 11122
Q ss_pred cCCeEEEecCCCCCCEEEEEEEEecCC-----cEEEEEEEEEcCC
Q psy14886 239 DGGLLEITNASFADAGEYECVVKSTVG-----KISTKTTVIVEGP 278 (505)
Q Consensus 239 ~~~~l~i~~~~~~~~g~y~C~~~n~~g-----~~~~~~~l~v~~~ 278 (505)
....|.|.++..+|+|.|+|.|.|... ..+..+.|.|.+.
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 155 HPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp SSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred ccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 456899999999999999999998642 2334566666553
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=149.81 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc------CCC--CCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN------SET--LPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~------~~~--~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++++|.|. .+.|.+.|.|+|+ +..+. ... .......|+.+. ..+|.|.+++ .+|+|.|+
T Consensus 12 v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~-~~DsG~Y~ 89 (238)
T 2p1y_A 12 AVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT-PSQTSVYF 89 (238)
T ss_dssp EETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC-GGGCEEEE
T ss_pred EeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC-cccCeeEE
Confidence 468999999999 6778899999995 21110 000 000113455543 3489999999 99999999
Q ss_pred EEEEcccCce-----EeeEEEEEEecCC-----------CccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECC--
Q psy14886 66 CRAKNQLKTR-----YSSAQLRVLTLKP-----------SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-- 127 (505)
Q Consensus 66 C~~~~~~~~~-----~~~~~l~v~~~~p-----------~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g-- 127 (505)
|.+.+..+.. .....|.|...++ .+... +....+.+|++++|.|.+.+.|.+.+.|++++
T Consensus 90 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~ 167 (238)
T 2p1y_A 90 CASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQS--PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPG 167 (238)
T ss_dssp EEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEE--CSEEEEETTSCEEEEEECCCTTCCEEEEEEECTT
T ss_pred EEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEcc--CceEEEeCCCeEEEEEEEecCCCCcEEEEEECCC
Confidence 9999875421 1235677765332 22222 24567899999999999999988999999953
Q ss_pred E---Ee---------cCCCcEEEee-----CCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 128 N---II---------GSGGRRKIFE-----NGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 128 ~---~~---------~~~~~~~~~~-----~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
. .+ ....++.+.. ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 168 EGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp SCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 1 11 1123444331 1369999999999999999999874
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=146.89 Aligned_cols=157 Identities=15% Similarity=0.198 Sum_probs=102.5
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE--EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~--~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~ 175 (505)
.+.+|++++|.|.+.+.|. .+.|+|+|..+...... .....+.|.|.++..+|+|.|+|.+.|..|.. ...+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence 5889999999999988765 99999999866432110 01123469999999999999999999877643 3447777
Q ss_pred EEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee---ecCCeEEEecCCC
Q psy14886 176 VLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN---IDGGLLEITNASF 250 (505)
Q Consensus 176 v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~ 250 (505)
|... ++.+.. .+...+..|+.++|.|.+.+.+ + .+.|++++..+...... .... .....|.|.+++.
T Consensus 94 V~~~~~~p~i~~-~~~~~v~~G~~v~L~C~~~~~p-~--~~~W~k~g~~~~~~~~~----~~~~~~~~~~~~L~I~~v~~ 165 (196)
T 2d3v_A 94 VTGFYNKPTLSA-LPSPVVTSGENVTLQCGSRLRF-D--RFILTEEGDHKLSWTLD----SQLTPSGQFQALFPVGPVTP 165 (196)
T ss_dssp EECSSCCCEEEC------------CEEEEEESSCC-S--EEEEEEC---CCEEEEE----CEECTTSCEEEEEECCCCBT
T ss_pred ecCCCCCCeEEc-cCCccccCCCcEEEEEEcCCCC-C--EEEEEccCCcccccccc----cccccCCCceeEEEeeecCc
Confidence 7663 222222 2335678999999999998876 3 67899998776421100 0011 1125899999999
Q ss_pred CCCEEEEEEEEecCC
Q psy14886 251 ADAGEYECVVKSTVG 265 (505)
Q Consensus 251 ~~~g~y~C~~~n~~g 265 (505)
+|.|.|+|.|.|..+
T Consensus 166 ~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 166 SHRWMLRCYGSRRHI 180 (196)
T ss_dssp TBCEEEEEEEEETTE
T ss_pred ccCeeEEEEEEccCC
Confidence 999999999999764
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=144.90 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=119.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEe----c--------CCCcEEEee---CCCEEEcCCCCCCCEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNII----G--------SGGRRKIFE---NGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~----~--------~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+.+|++++|.|.+.+.+.+.+.|++. +... . ...++.... +.+|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 57799999999999999889999999982 2211 0 123444322 23599999999999999999
Q ss_pred EEcCCC---ceeeeEEEEEE----eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCccc-
Q psy14886 161 ATNVHG---MDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE- 232 (505)
Q Consensus 161 ~~~~~g---~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~- 232 (505)
+.+..+ .....+.|.|. .+|.+... +....+..|+.+.|.|.+.+.+++.+.+.|+++|..+.........
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~ 167 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLF-PPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPS 167 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSCCBCCEEEEE-CCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE
T ss_pred eccCCcceeEEcCceEEEEeCCCCCCCeEEcc-CCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcC
Confidence 999887 33445778887 33443332 2222333689999999999875555688899999988642100000
Q ss_pred -CCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEE
Q psy14886 233 -TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271 (505)
Q Consensus 233 -~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 271 (505)
........+.|.|..+..+|.|.|+|.|.|..+.....+
T Consensus 168 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 168 KSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207 (213)
T ss_dssp EETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred ccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence 011111234588888888999999999999887655544
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-19 Score=150.30 Aligned_cols=168 Identities=24% Similarity=0.366 Sum_probs=123.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe------------cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII------------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~------------~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
....+.+|+++.|.|.+.+.|.+.+.|++++..+ ....+.... ...|.|.+++.+|+|.|+|.+.+.
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~G~Y~C~~~~~ 90 (209)
T 1nbq_A 12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGTYTCMVSEE 90 (209)
T ss_dssp SBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCSEEEEEEEET
T ss_pred CceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHCcEEEEEEecC
Confidence 4456889999999999998888999999976542 112333333 377999999999999999999998
Q ss_pred CCc--eeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEe-eecCCCCeEEEEEeCCEEecCCCCCc--c--cCCeee
Q psy14886 165 HGM--DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNE--L--ETPNIN 237 (505)
Q Consensus 165 ~g~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~w~~~~~~~~~~~~~~--~--~~~~~~ 237 (505)
.|. ....+.|.|..+|..... .....+..|+.+.|.|.+ .+.|.+ .+.|++++..+....... . ......
T Consensus 91 ~g~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (209)
T 1nbq_A 91 GGNSYGEVKVKLIVLVPPSKPTV-NIPSSATIGNRAVLTCSEQDGSPPS--EYTWFKDGIVMPTNPKSTRAFSNSSYVLN 167 (209)
T ss_dssp TSSCEECCEEECCEEBCCCCCCC-CCBSEEETTSCEEECCCCCSCBSCC--EEEEEETTCCCCSCSSSSSSCTTCCCCCC
T ss_pred CCCccceEEEEEEEecCCcCCCc-ccccceecCCEEEEEEeCCCCCCCc--eeEEEECCeeCCCccccceeeeccceEEc
Confidence 653 344567777776665433 234567889999999997 777665 677999988775532110 0 011112
Q ss_pred ecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 238 IDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 238 ~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
.....|.|..+..+|.|.|+|.|.|..|...
T Consensus 168 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 198 (209)
T 1nbq_A 168 PTTGELVFDPLSASDTGEYSCEARNGYGTPM 198 (209)
T ss_dssp TTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred CCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence 2457899999999999999999999999873
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-18 Score=147.53 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=108.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE-----ECcC--CCCCCCCCCcEEEEC----CeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE-----LLNS--ETLPLEDQDRYFIQD----NVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~-----~l~~--~~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|++. .+.. ........+|+.... .+|.|.+++ .+|+|.|+|.+.
T Consensus 16 v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 94 (250)
T 3esu_F 16 ASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLE-QEDIGTYFCQQG 94 (250)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred eeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCC-hhhCEEEEEEEe
Confidence 4689999999999988888999999531 1100 000011235665432 279999999 999999999999
Q ss_pred cccCceEe-eEEEEEEec------------------CCCccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--
Q psy14886 70 NQLKTRYS-SAQLRVLTL------------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKD-- 126 (505)
Q Consensus 70 ~~~~~~~~-~~~l~v~~~------------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~-- 126 (505)
|..+.... ...|.|... ++.+... +....+.+|++++|.|.+.+.+ .+.+.|+++
T Consensus 95 n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~ 172 (250)
T 3esu_F 95 NTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQ--SGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRP 172 (250)
T ss_dssp SSSSCEECCCEEEEEC------------------------CEE--CCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECT
T ss_pred eCCCceECCCEEEEEECCCCcccccccccccccCcccceEEec--CCceEEcCCceEEEEEEecCCcccCCEEEEEEECC
Confidence 86654333 345666542 1111122 2446689999999999998876 779999996
Q ss_pred CEEec-----------------CCCcEEEeeCC-----CEEEcCCCCCCCEEEEEEEEc
Q psy14886 127 GNIIG-----------------SGGRRKIFENG-----NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 127 g~~~~-----------------~~~~~~~~~~~-----~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+..+. ...++.+..+. +|.|.+++.+|+|.|+|.+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 173 GQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp TSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 43221 11344444322 599999999999999999997
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=150.11 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=117.1
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECcC----------CCCCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLNS----------ETLPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~~----------~~~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|.+|++++|.|.+.+.+ .+.+.|+|. +..+.. ........+|+.+. . .+|.|.+++ .+|
T Consensus 13 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D 91 (253)
T 3uzq_A 13 VKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLT-SGD 91 (253)
T ss_dssp ECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCC-ccc
Confidence 46899999999998754 689999992 211100 00000123466553 1 249999999 999
Q ss_pred CeEEEEEEEcccCceE-eeEEEEEEec--------------CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC----eE
Q psy14886 61 PAMYQCRAKNQLKTRY-SSAQLRVLTL--------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP----KF 121 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~-~~~~l~v~~~--------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~----~i 121 (505)
+|.|+|.+.+..+... ..+.|.|... ++.+... +....+.+|++++|.|.+.+.+.+ .+
T Consensus 92 sG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v 169 (253)
T 3uzq_A 92 TAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQT--PASLAVSLGQRATISCRASENVDRYGNSFM 169 (253)
T ss_dssp CEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEE--CSEEEECTTSCEEEEEEESSCCEETTEECE
T ss_pred CEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECc--CCeEEEeCCCCEEEEEEecCccccCCCcEE
Confidence 9999999998655443 3466777632 2223222 245678999999999999988776 99
Q ss_pred EEEEC--CEEec------------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCCe
Q psy14886 122 VWKKD--GNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPS 181 (505)
Q Consensus 122 ~W~~~--g~~~~------------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~ 181 (505)
.|+++ +.... ...++.....+ +|.|.+++.+|+|.|+|.+.|..+..-.. ..|.|...++
T Consensus 170 ~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~ 247 (253)
T 3uzq_A 170 HWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLE 247 (253)
T ss_dssp EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC--
T ss_pred EEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCC
Confidence 99984 22111 11333332222 49999999999999999999876544443 5677755443
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-18 Score=149.87 Aligned_cols=163 Identities=17% Similarity=0.277 Sum_probs=110.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE-----ECcCC--CCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE-----LLNSE--TLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~-----~l~~~--~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|++++|.|.+.+.|.+.+.|+|++. .+... ........|+.+. + .+|.|.+++ .+|+|.|+|.+.
T Consensus 24 v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~~~ 102 (276)
T 3auv_A 24 ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ-PEDFATYYCQQH 102 (276)
T ss_dssp CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred EcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC-hhhCEEEEEEEe
Confidence 5789999999999988889999999642 11100 0000123566553 1 389999999 999999999999
Q ss_pred cccCceE-eeEEEEEEecC------------CCccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEECC--EEe--
Q psy14886 70 NQLKTRY-SSAQLRVLTLK------------PSFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII-- 130 (505)
Q Consensus 70 ~~~~~~~-~~~~l~v~~~~------------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~~~-- 130 (505)
|..+... ..+.|.|...+ |.+.+.. +....+.+|++++|.|.+.+.+ .+.+.|++++ ...
T Consensus 103 n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~-p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~ 181 (276)
T 3auv_A 103 YTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEW 181 (276)
T ss_dssp SSSSCCCCCCEEEEC-----------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEE
T ss_pred cCCcccccCCEEEEEecCCCccccccccccCcceEEEC-CCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEE
Confidence 8654422 23566666421 2222211 2346789999999999998876 5799999953 211
Q ss_pred ---------------cCCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 131 ---------------GSGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 131 ---------------~~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
....++.+..+ .+|.|.+++.+|+|.|+|.|.|..
T Consensus 182 l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 182 VAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp EEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred EEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 01235554432 269999999999999999999973
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=146.60 Aligned_cols=163 Identities=18% Similarity=0.298 Sum_probs=110.2
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EECc---C---C----CCCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--ELLN---S---E----TLPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~l~---~---~----~~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|.+|++++|.|.+.+. +.+.+.|+|.. ..+. . . .......+|+.+. . .+|.|.+++ .+|
T Consensus 18 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 96 (256)
T 3juy_B 18 KKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR-SAD 96 (256)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCC-ccc
Confidence 4689999999999873 57899999832 1110 0 0 0011123577664 2 369999999 999
Q ss_pred CeEEEEEEEcc------------cCceEeeEEEEEEecC--------------CCccCCCCCceEEeeCCCeEEEEeecC
Q psy14886 61 PAMYQCRAKNQ------------LKTRYSSAQLRVLTLK--------------PSFKKRPLESETYAGEGGNVTIFCNPE 114 (505)
Q Consensus 61 ~G~Y~C~~~~~------------~~~~~~~~~l~v~~~~--------------p~~~~~~~~~~~~v~~g~~v~l~C~~~ 114 (505)
+|.|.|.+.+. .......+.|.|...+ +.+... +....+.+|++++|.|.+.
T Consensus 97 sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~ 174 (256)
T 3juy_B 97 TAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQA--PGTLSLSPGERATFSCRSS 174 (256)
T ss_dssp CEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEE--CSEEEECTTSCEEEEEEES
T ss_pred CEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEec--CCeEEEeCCCCEEEEEEEC
Confidence 99999999886 2222334667776521 122222 3556789999999999998
Q ss_pred CCCC-CeEEEEEC--CEEec------------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 115 AAPK-PKFVWKKD--GNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 115 ~~p~-~~i~W~~~--g~~~~------------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+.+. +.+.|++. +..+. ...++....++ +|.|.+++.+|+|.|+|.|.+...
T Consensus 175 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 175 HSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 8775 89999982 22111 12344433333 499999999999999999988544
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-19 Score=152.22 Aligned_cols=167 Identities=19% Similarity=0.292 Sum_probs=109.3
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECC--EEC---c-CC-----CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNG--ELL---N-SE-----TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~--~~l---~-~~-----~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|.+.+. |.+.+.|+|.+ ... . .. .......+|+.+. ..+|.|.+++ .+|+|.|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y 90 (218)
T 3s96_B 12 FSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQ-PEDEAIY 90 (218)
T ss_dssp EETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCC-GGGCEEE
T ss_pred ECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCC-cccCEEE
Confidence 3589999999999988 88999999932 100 0 00 0000123466542 3479999999 9999999
Q ss_pred EEEEEcccC-----ceEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCCC
Q psy14886 65 QCRAKNQLK-----TRYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSGG 134 (505)
Q Consensus 65 ~C~~~~~~~-----~~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~~ 134 (505)
+|.+.+..+ .....+.|.|.. .+|.+...+ ....+..|+.++|.|.+.+ .|.+ .+.|+++|..+..+.
T Consensus 91 ~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~--~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~ 168 (218)
T 3s96_B 91 ICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP--PSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV 168 (218)
T ss_dssp EEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----
T ss_pred EEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC--CCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCce
Confidence 999998765 223346777774 234443322 1122456789999999988 4666 999999999886421
Q ss_pred cE--EEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 135 RR--KIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 135 ~~--~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
.. ....+ ..|.|..+..+|+|.|+|.|.|..+....
T Consensus 169 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~ 212 (218)
T 3s96_B 169 DTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEK 212 (218)
T ss_dssp ----------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEE
T ss_pred ecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccc
Confidence 11 01112 23777777788899999999998765443
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=143.94 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=109.1
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVL 177 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~v~ 177 (505)
.+.+|++++|.|.+.+ +.+.+.|+|+|.. .....+.|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|.
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~ 89 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVAT 89 (184)
T ss_dssp EEETTCCEEEEEECST-TCSEEEEEETTTC-------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEE
T ss_pred cccCCCcEEEEEeCCC-CCCEEEEEECCcc-------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEec
Confidence 6889999999999987 6789999998865 12345679999999999999999999977632 334677775
Q ss_pred eC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEE
Q psy14886 178 HG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255 (505)
Q Consensus 178 ~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 255 (505)
.. ++.+...+ ...+..|+.+.|.|.+.+.+ ..+.|+++|..+.... ........|.|..+..+|.|.
T Consensus 90 ~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~---~~~~w~k~g~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~ 158 (184)
T 2gi7_A 90 GVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF---DQFALYKEGDPAPYKN-------PERWYRASFPIITVTAAHSGT 158 (184)
T ss_dssp SSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC---CEEEEEECCCCTTSCC-------CCEEEEESSSEEEETTCCSEE
T ss_pred CcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC---cEEEEEECCCcCccee-------cCCCceEEEEEccCCccCCeE
Confidence 42 22222222 34567899999999986543 3678999987664411 112234578889999999999
Q ss_pred EEEEEEecCC
Q psy14886 256 YECVVKSTVG 265 (505)
Q Consensus 256 y~C~~~n~~g 265 (505)
|+|.|.|..+
T Consensus 159 Y~C~a~n~~~ 168 (184)
T 2gi7_A 159 YRCYSFSSRD 168 (184)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEEeCCC
Confidence 9999999754
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=146.20 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EE--Cc----CC---CCCCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--EL--LN----SE---TLPLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~--l~----~~---~~~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
|.+|++++|.|.+.+. +.+.+.|+|.. .. +. .. .......+|+.+.. .+|.|.+++ .+|+
T Consensus 20 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~Ds 98 (257)
T 3gkz_A 20 VKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS-SEDT 98 (257)
T ss_dssp ECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC-GGGC
T ss_pred EcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC-hhhC
Confidence 4689999999999884 47899999932 11 10 00 00001235666531 279999999 9999
Q ss_pred eEEEEEEEcccC--c--eEeeEEEEEEec-------------CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEE
Q psy14886 62 AMYQCRAKNQLK--T--RYSSAQLRVLTL-------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVW 123 (505)
Q Consensus 62 G~Y~C~~~~~~~--~--~~~~~~l~v~~~-------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W 123 (505)
|.|+|.+.+..+ . ....+.|.|... ++.+... +....+.+|++++|.|.+.+.+.+ .+.|
T Consensus 99 G~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~v~W 176 (257)
T 3gkz_A 99 ATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS--PAIMSASPGEKVTLTCSASSSVSSSHLYW 176 (257)
T ss_dssp EEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECS--CSEEEECTTCCEEEEEEESSCCCGGGEEE
T ss_pred EEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcC--CceEEEeCCCcEEEEEEEccCccceEEEE
Confidence 999999998621 1 223466777653 1222222 345778999999999999988777 9999
Q ss_pred EEC--CEEec------------CCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEe
Q psy14886 124 KKD--GNIIG------------SGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLH 178 (505)
Q Consensus 124 ~~~--g~~~~------------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~ 178 (505)
+++ +..+. ...++..... .+|.|.+++.+|+|.|+|.|.+.....-.. ..|.|..
T Consensus 177 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 177 YQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred EEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 983 32211 0133333322 249999999999999999998754433333 4566644
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=151.82 Aligned_cols=171 Identities=13% Similarity=0.199 Sum_probs=108.0
Q ss_pred CCCCCceEEEEEEeccCCCe-----EEEEECCEECcCC---------CC-CCCCCCcEE-----EECCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVT-----YSWFRNGELLNSE---------TL-PLEDQDRYF-----IQDNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~-----~~W~~~~~~l~~~---------~~-~~~~~~~~~-----~~~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.|.+. |.|+|++...... .. ......++. ..+.+|.|.+++ .+|
T Consensus 15 v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~-~~D 93 (248)
T 3pv7_A 15 TPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ-LEE 93 (248)
T ss_dssp EETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCC-GGG
T ss_pred EeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCC-HHH
Confidence 35799999999998876554 9999964322100 00 000001110 013469999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCC-----
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSG----- 133 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~----- 133 (505)
+|.|+|.+.+..+.....+.|.|.. +|.+...+. ..+..|+.+.|.|.+.+ .|.+ .+.|+++|..+...
T Consensus 94 ~G~Y~C~~~~~~~~~~~~~~L~V~~-~P~v~~~~~---~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~ 169 (248)
T 3pv7_A 94 AGEYRCEVVVTPLKAQGTVQLEVVA-SPASRLLLD---QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISE 169 (248)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEECC-----------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECT
T ss_pred CeEEEEEEEeCCccceeEEEEEEec-CCceEEecC---CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcccccc
Confidence 9999999998877777778888885 666555432 23456788889999988 7888 99999988543211
Q ss_pred -C---cEEEee------CCCEEEcCCCCCCCEEEEEEEEcCCCceee--eEEEEE
Q psy14886 134 -G---RRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDES--KGRLIV 176 (505)
Q Consensus 134 -~---~~~~~~------~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~--~~~l~v 176 (505)
. ...... ...|.+.....+|.|.|+|.|.|..+.... .+.|.|
T Consensus 170 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 170 DVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp TEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred ceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 0 011111 124778888889999999999998886444 455555
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=140.39 Aligned_cols=145 Identities=15% Similarity=0.270 Sum_probs=107.3
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcC-CCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISP-VSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~-v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
....|+++.|.|.+.+ +. .+.|+|+|..+... .+++|.|.+ +..+|+|.|+|.|.|..|.....+.+.|..
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~ 81 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGS 81 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCS
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence 4578999999999987 43 49999999988753 245799999 999999999999999988755544444432
Q ss_pred CCeeee---------------------eCCCce---EEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCC
Q psy14886 179 GPSYYE---------------------QLPPKI---TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234 (505)
Q Consensus 179 ~p~~~~---------------------~~~~~~---~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 234 (505)
.+.... ...... .+..|+.+.|.|.+ |.| .+.|+++|..+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p--~i~W~k~g~~i~~~~------- 149 (186)
T 1jbj_A 82 ADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDK--TIKWLKDGSIISPLN------- 149 (186)
T ss_dssp CCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCS--CEEEEETTEECCCSS-------
T ss_pred ccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCC--eEEEEECCEECcccC-------
Confidence 211100 000011 23389999999998 444 567999999886421
Q ss_pred eeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 235 ~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
.....|.|..+..+|.|.|+|.|.|..|..
T Consensus 150 ---~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 150 ---ATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ---CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ---CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 145689999999999999999999988865
|
| >2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=130.01 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=92.3
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeee-ccccccEEEEEEeCCccccCCCCceEEEEEEEcCC---CCcEEEEeeecC
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGG-GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND---TEFQSETLKEYG 443 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~-~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~---~~~~~~~~~~~~ 443 (505)
|.|.+|... .+.|.+..|+.+|.++++. ..+.++|.|.|++|+....+|.|++|+|+|+..+. ..|... +. .
T Consensus 1 G~g~~S~~v-~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~-~~--~ 76 (124)
T 2dbj_A 1 GSSGSSGWI-LASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEE-VG--Q 76 (124)
T ss_dssp CCSCCCCCC-CCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEEE-EE--S
T ss_pred CcCCCCCCE-EEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEEE-eC--C
Confidence 567777765 7888899999999999998 57889999999997657899999999999985432 233211 11 1
Q ss_pred ceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 444 NVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 444 ~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
..+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.+.
T Consensus 77 --~~~~~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~~~ 118 (124)
T 2dbj_A 77 --NGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAH 118 (124)
T ss_dssp --TTSCEEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECCCS
T ss_pred --CcceEEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcCCC
Confidence 235678899999999999999999999999999999998753
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.75 E-value=8.4e-18 Score=144.00 Aligned_cols=169 Identities=17% Similarity=0.231 Sum_probs=116.3
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EEe----------c--CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NII----------G--SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~~----------~--~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+ . ...++.....+ +|.|.+++.+|+|.|+|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 88 (213)
T 3d9a_L 9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC 88 (213)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred ccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEE
Confidence 4567899999999999999988899999842 211 1 12344444332 69999999999999999
Q ss_pred EEEcCCCceeee-EEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC-----c
Q psy14886 160 TATNVHGMDESK-GRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----E 230 (505)
Q Consensus 160 ~~~~~~g~~~~~-~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~-----~ 230 (505)
.+.+..+..... ..|.|.. +|.+....+ ......|+.+.|.|.+.+.+++.+.+.|+++|..+...... .
T Consensus 89 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~-~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 167 (213)
T 3d9a_L 89 QQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP-SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD 167 (213)
T ss_dssp EECSSSSCEECCCEEEEECCCCBCCEEEEECC-CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCC
T ss_pred eeecCCcceeCCCEEEEEecCCCCceeEeECC-ChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCcc
Confidence 999887754333 4677754 343333222 22233688999999998854444578899999987653100 0
Q ss_pred ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 231 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 231 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
..... ....+.|.|..+..+|.|.|+|.|.|.....
T Consensus 168 ~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 168 SKDST-YSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp TTTCC-EEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCCCC-EEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 00011 1122478999999999999999999977653
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=139.31 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=107.4
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCC---C--CCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSET---L--PLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~---~--~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+|++|+|.|.+.+ |.+.|.|+|++..+.... . .....+|+.+ .+++|.|.+++ .+|+|.|+|.+.+..+
T Consensus 8 ~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~-~~DsG~Y~C~~~n~~~- 84 (171)
T 1ccz_A 8 VVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT-SSDEDEYEMESPNITD- 84 (171)
T ss_dssp ETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCC-GGGCEEEEEECTTCCS-
T ss_pred EcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCC-hhhCceEEEEEeCCCC-
Confidence 47999999999854 789999999987542110 0 0012346655 46899999999 9999999999988776
Q ss_pred eEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCC
Q psy14886 75 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDS 154 (505)
Q Consensus 75 ~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~ 154 (505)
...+.|.|...++. +.+..... ...|.|.+.+.|.+.+.|+++|..+.... ...|.+. ...|.
T Consensus 85 -~~~~~L~V~~~~~~-------p~i~~~~~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~~------~~~l~~~--~~~~~ 147 (171)
T 1ccz_A 85 -TMKFFLYVLEMVSK-------PMIYWECS-NATLTCEVLEGTDVELKLYQGKEHLRSLR------QKTMSYQ--WTNLR 147 (171)
T ss_dssp -CEEEEEEEECCCCC-------CEEEEETT-TTEEEEECSSCSSCEEEEEETTEEEEEES------SSEEEEE--CSCCS
T ss_pred -cEEEEEEEECcCCC-------CEEEEecC-CcEEEEEeCCCCCcEEEEEECCEECcCCc------ceEEEEe--ccCCC
Confidence 55677888753221 11112111 13799999998999999999998875322 1223333 37889
Q ss_pred EEEEEEEEcCCCceeeeEEE
Q psy14886 155 GIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l 174 (505)
|.|+|.|.|..+.....+.|
T Consensus 148 g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 148 APFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp SCEEEEEEETTEEEEEEECC
T ss_pred ceEEEEEEcccCcccceeEE
Confidence 99999999998876665433
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=139.60 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=106.9
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEEC-CEECc---CC-C---CCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRN-GELLN---SE-T---LPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~-~~~l~---~~-~---~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+ .+.+.|.|+|+ +..+. .. . ......+|+.+ .+++|.|.+++ .+|+|.|+|.+.
T Consensus 11 v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~-~~D~G~Y~C~v~ 89 (180)
T 2dru_A 11 AITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVS-KEDRGDYYMRML 89 (180)
T ss_dssp EETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCC-GGGCEEEEEEEE
T ss_pred EEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCC-HHHCeEEEEEEE
Confidence 358999999999854 34689999994 33221 00 0 00112367776 46789999999 999999999998
Q ss_pred cccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcC
Q psy14886 70 NQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISP 148 (505)
Q Consensus 70 ~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~ 148 (505)
+.. .....+.|.|.+.++ .+.+. ..+..++|.|.+ .+ |.+.+.|++++..+.. ..+.+|.+..
T Consensus 90 ~~~-~~~~~~~L~V~~~~~-------~P~i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~------~~~~~l~~~~ 153 (180)
T 2dru_A 90 HET-EDQWKITMEVYEMVS-------KPMIY-WECSNATLTCEVLEG-TDVELKLYQGKEHLRS------LRQKTMSYQW 153 (180)
T ss_dssp SSS-EEEEEEEEEEECCCC-------CCEEE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEEE------ESSSEEEEEC
T ss_pred cCC-eEEEEEEEEEECCCC-------CCEEE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECcC------CCCCEEEEEE
Confidence 765 445567777875221 12222 245679999999 55 8899999999988751 2234555533
Q ss_pred CCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 149 VSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
.+|+|.|+|.|.|..+...+..
T Consensus 154 --~~d~g~Y~C~a~N~~~~~~~~~ 175 (180)
T 2dru_A 154 --TNLRAPFKCKAVNRVSQESEME 175 (180)
T ss_dssp --SCCSSCEEEEEEETTEEEEEEE
T ss_pred --hhcCccEEEEEecCcCccccce
Confidence 7899999999999988765543
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=148.03 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=115.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc---CC-------CCCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN---SE-------TLPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~---~~-------~~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. .. .......+|+.+.. .+|.|.+++ .+|
T Consensus 38 v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 116 (282)
T 1qok_A 38 VRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT-SED 116 (282)
T ss_dssp EETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC-hhh
Confidence 46899999999998865 5889999953 1110 00 00001235666532 489999999 999
Q ss_pred CeEEEEEEEcccC---ceE--eeEEEEEEecC------------CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEE
Q psy14886 61 PAMYQCRAKNQLK---TRY--SSAQLRVLTLK------------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123 (505)
Q Consensus 61 ~G~Y~C~~~~~~~---~~~--~~~~l~v~~~~------------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W 123 (505)
+|.|+|.+.|..+ ... ..+.|.|...+ +...+...+....+.+|++++|.|.+.+.+ +.+.|
T Consensus 117 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W 195 (282)
T 1qok_A 117 TAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHW 195 (282)
T ss_dssp CEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEE
T ss_pred CEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEE
Confidence 9999999998765 111 24567777532 011111112456789999999999999988 89999
Q ss_pred EE--CCEEec------------CCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEEE
Q psy14886 124 KK--DGNIIG------------SGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVL 177 (505)
Q Consensus 124 ~~--~g~~~~------------~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v~ 177 (505)
++ +|..+. ...++.... ..+|.|.++..+|+|.|+|.+.+..+.... ...|.|.
T Consensus 196 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 196 FQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 99 554331 123444332 225999999999999999999875433222 2556664
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=141.69 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=114.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEe------------cCCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
....+.+|++++|.|.+.+.|.+.+.|+++ |..+ ....++.....+ .|.|.+++.+|+|.|+|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 87 (210)
T 1lk3_L 8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC 87 (210)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEE
Confidence 556789999999999999988889999984 2221 112344443322 69999999999999999
Q ss_pred EEEcCCCceee-eEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC-CC---Ccc
Q psy14886 160 TATNVHGMDES-KGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DL---NEL 231 (505)
Q Consensus 160 ~~~~~~g~~~~-~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~---~~~ 231 (505)
.+.+..+.... ...|.|.. +|.+....+. .....|+.+.|.|.+.+.+++.+.+.|+++|..+... .. ...
T Consensus 88 ~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 166 (210)
T 1lk3_L 88 QQSWNGPLTFGAGTKLELKRADAAPTVSIFPPS-TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD 166 (210)
T ss_dssp EECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred EEEcCCCceeCCCEEEEEcCCCcCCeEEEECCc-hhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence 99987764433 34666654 2333332222 2233688999999999865444678899999987653 00 000
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.........+.|.|..+..+|.|.|+|.|.|....
T Consensus 167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 00001111236889998889999999999997664
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=147.74 Aligned_cols=164 Identities=20% Similarity=0.279 Sum_probs=109.3
Q ss_pred CCCCCceEEEEEEeccC---CCeEEEEECC--EECc---CC--CCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP---DVTYSWFRNG--ELLN---SE--TLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p---~~~~~W~~~~--~~l~---~~--~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|.+.+.| .+.|.|+|++ ..+. .. ........|+... + .+|.|.+++ .+|+|.|+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C 90 (212)
T 1q0x_L 12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ-TEDEAIYFC 90 (212)
T ss_dssp ECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEE
T ss_pred ecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC-ccCCEEEEE
Confidence 46899999999998866 4789999953 2220 00 0000123566542 2 389999999 999999999
Q ss_pred EEEcccCceE-eeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCCCcE---E
Q psy14886 67 RAKNQLKTRY-SSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRR---K 137 (505)
Q Consensus 67 ~~~~~~~~~~-~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~~~~---~ 137 (505)
.+.+..+... ....|.|.. .+|.+...+.. ..+.+|+.++|.|.+.+. |.+ .+.|+++|..+..+... .
T Consensus 91 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~ 168 (212)
T 1q0x_L 91 ALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS--SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPS 168 (212)
T ss_dssp EEECSSCEEECCCEEEEECCSCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE
T ss_pred EEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC--HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCce
Confidence 9998765433 234566642 24444332211 123478999999999875 433 89999999988654211 1
Q ss_pred EeeC------CCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 138 IFEN------GNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 138 ~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
...+ ..|.|.++..+|.|.|+|.|.|....
T Consensus 169 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 169 KQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp ECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred eCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 1112 24888888889999999999987544
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=150.62 Aligned_cols=168 Identities=17% Similarity=0.263 Sum_probs=111.4
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc------C------CCCCCCCCCcEEEE------CCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN------S------ETLPLEDQDRYFIQ------DNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~------~------~~~~~~~~~~~~~~------~~~L~i~~~~~~ 58 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. . ........+|+.+. ..+|.|.+++ .
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~ 90 (222)
T 1q9r_B 12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR-A 90 (222)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC-G
T ss_pred EcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC-c
Confidence 46899999999998765 6889999953 2110 0 00000123567653 2489999999 9
Q ss_pred CCCeEEEEEEEcccC-----ceEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCE
Q psy14886 59 RDPAMYQCRAKNQLK-----TRYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGN 128 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~ 128 (505)
+|+|.|.|.+.+..+ .....+.|.|... +|.+...+. ...+.+|+.++|.|.+.|. |.+ .+.|+++|.
T Consensus 91 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 168 (222)
T 1q9r_B 91 EDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 168 (222)
T ss_dssp GGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECC--CSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccc--cccccCCCcEEEEEEEccEECCCCEEEEecCCe
Confidence 999999999998654 1223456777642 233322221 1125689999999999885 877 999999987
Q ss_pred EecCCCcEEEee------CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 129 IIGSGGRRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 129 ~~~~~~~~~~~~------~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
.+.......... ...|.|.++...| |.|+|.|.|..|......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~ 217 (222)
T 1q9r_B 169 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 217 (222)
T ss_dssp CTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence 653211111111 2358898988889 999999999888654443
|
| >3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=140.73 Aligned_cols=250 Identities=13% Similarity=0.099 Sum_probs=139.5
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
+..|++++|.|.+...+ .|.|.++|..... ..+++|.|.++...|+|.|+|.+ .+.....+.+.|..++
T Consensus 18 ~~~G~~v~l~C~~~~~~--~i~W~~~~~~~~~------~~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~~~~ 86 (306)
T 3d85_D 18 DAPGEMVVLTCDTPEED--GITWTLDQSSEVL------GSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKE 86 (306)
T ss_dssp SCCCEEEEEECSSSCCS--SCEEEETTCCCCC------EESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEEEEE
T ss_pred CccCCcEEEECCCCCCC--cCEEEECCccccC------CCCCEEEEEecCcCCCceEEEee---CCcccceEEEEEEecc
Confidence 45799999999987433 8999999874321 24678999999999999999999 3555555566554311
Q ss_pred ------eeee-----eCCCceEEEe-eccEEEEEEeeecCCCCeEEE--EEeCC---EEecCCCCCcccCCeeeecCCe-
Q psy14886 181 ------SYYE-----QLPPKITIAA-HRNLQLRCSAHTEELLDVAYI--WTHNG---VRIGNMDLNELETPNINIDGGL- 242 (505)
Q Consensus 181 ------~~~~-----~~~~~~~~~~-g~~~~l~C~~~~~~~~~~~~~--w~~~~---~~~~~~~~~~~~~~~~~~~~~~- 242 (505)
.+.. ..+..+.... +..-.+.|.+..+....+.+. ..+.. ....-.. ...........+..
T Consensus 87 ~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~~-~~~~~~~c~v~~~~~ 165 (306)
T 3d85_D 87 DGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGA-ATLSAERVRGDNKEY 165 (306)
T ss_dssp TTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCCSSEEEEEEEEECSSSCEEEEECC-CEEEEEEEC--CEEE
T ss_pred CCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCCCceeEEEEEEecCCCCcceECCC-CCCCccceeecCccc
Confidence 0000 0011222221 111144554444332222111 11100 0000000 00000000000100
Q ss_pred -EEE----ecC----CCCCCEEEEEEEEecCCcEEEEEEEEE--cCCCCCCCceEEEEEeC-CeEEEEeecCCCCCCCC-
Q psy14886 243 -LEI----TNA----SFADAGEYECVVKSTVGKISTKTTVIV--EGPPGLPGGVQVVEVHK-TSATIQWTDGATNGRPI- 309 (505)
Q Consensus 243 -l~i----~~~----~~~~~g~y~C~~~n~~g~~~~~~~l~v--~~~p~~p~~~~~~~~~~-~~v~l~w~~~~~~~~~i- 309 (505)
..+ ... .......+.|.|.|..|..+....+.+ ...|.||.++.+..... ..+.|+|++|...+.+.
T Consensus 166 ~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~ 245 (306)
T 3d85_D 166 EYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHS 245 (306)
T ss_dssp EEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTT
T ss_pred cceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCc
Confidence 111 110 122456789999999997666655544 46799999998877443 79999999987555444
Q ss_pred ---ceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 310 ---THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 310 ---~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
..|+|+|+..+...|...... ....+ . |.+++.|+|+|+|.|..|.|.+|+++
T Consensus 246 ~~~L~Y~vryr~~~~~~~~~~~~~----------~~ts~---~-l~~~~~Y~vqVRa~~~~~~G~WSeWS 301 (306)
T 3d85_D 246 YFSLTFCVQVQGKSKREKKDRVFT----------DKTSA---T-VICRKNASISVRAQDRYYSSSWSEWA 301 (306)
T ss_dssp TSCEEEEEEEECC------CEEEE----------SSSEE---E-ECCCSSCEEEEEEEESSSCCCCCCCE
T ss_pred eeeEEEEEEEEECCCCccEEEeec----------cccEE---E-EeCCCeEEEEEEeccCCCCCCCCCCC
Confidence 689999998776556543111 11111 2 55799999999999999999999886
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-17 Score=140.76 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=117.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC-----CCeEEEEECCEEecC---------------CCcEEEeeC------CCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-----KPKFVWKKDGNIIGS---------------GGRRKIFEN------GNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-----~~~i~W~~~g~~~~~---------------~~~~~~~~~------~~l~i~~v~ 150 (505)
..+.+.+|+++.|.|.+.+.| ...+.|++++..+.. ..+..+..+ .+|.|.+++
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 88 (222)
T 3sbw_C 9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK 88 (222)
T ss_dssp SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence 456788999999999987766 348999997643310 133333322 269999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC-CEEecCCCCC
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLN 229 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~-~~~~~~~~~~ 229 (505)
.+|+|.|+|.+.+ .+.....+.|.|..++..... .....+..|+.+.|.|.+.+.|.| .+.|+++ +..+......
T Consensus 89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~g~~v~L~C~~~g~P~p--~i~W~~~~g~~~~~~~~~ 164 (222)
T 3sbw_C 89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQ-RILVVDPVTSEHELTCQAEGYPKA--EVIWTSSDHQVLSGKTTT 164 (222)
T ss_dssp GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEE-EEEEEETTTTEEEEEEEEEEBSCC--EEEEEETTCCEECCEEEE
T ss_pred cccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCc-eeeeeecCCCcEEEEEEecCCCCC--eEEEEECCCceecCccce
Confidence 9999999999998 566666788888755443211 111245678899999999997665 6679998 5554331100
Q ss_pred cccCCeeeecCCeEE---EecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 230 ELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 230 ~~~~~~~~~~~~~l~---i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
.........+. ...+...|.|.|+|.|.|..|.....+.+.|...|
T Consensus 165 ----~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 165 ----TNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP 213 (222)
T ss_dssp ----EECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred ----EEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence 00000111111 11334688999999999999999999999887655
|
| >3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=138.66 Aligned_cols=182 Identities=13% Similarity=0.081 Sum_probs=128.3
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~ 360 (505)
+|.++.+...+. ...|+|+++.+.++.+ .|.|+|+.. ..|......+ ......+.+ |.++..|.||
T Consensus 4 ~P~nv~~~s~n~-~~iL~W~pp~~~~~~v-~Y~V~y~~~--~~w~~~c~~~---------~~~~c~lt~-l~~~~~Y~~r 69 (201)
T 3lqm_A 4 PPENVRMNSVNF-KNILQWESPAFAKGQL-TFTAQYLSY--RIFQDKCMQT---------TLTECDFSS-LSKYGDHTLR 69 (201)
T ss_dssp CCEEEEEEEETT-EEEEEEECCCCSSSCC-EEEEEEEET--TEEEEEEEEE---------SSSEEECTT-SCSSSCEEEE
T ss_pred CCcccEEEEECC-ceEEEECCCCCCCCCe-EEEEEEEEC--CCcccCcCcc---------CCCEEECCC-CccCCCEEEE
Confidence 467787766555 4679999998766654 599999875 3576433222 223344444 8899999999
Q ss_pred EEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCC---------CCceEEEEEEEcCC
Q psy14886 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA---------PNIYYKIFWRKKND 431 (505)
Q Consensus 361 v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~---------~i~~Y~v~~~~~~~ 431 (505)
|+|.|..|.|.++.. .+.......++|| .+.+. ...++|.|.|.+|.. ..++ .+..|+|.|.+.+.
T Consensus 70 V~A~~~~~~S~~s~~--~f~~~~~t~~~PP-~v~~~-~~~~si~v~w~~P~~-~~~~~~~~~~~~~~~l~Y~v~y~~~~~ 144 (201)
T 3lqm_A 70 VRAEFADEHSDWVQI--TFSPVDDTIIGPP-GMQVE-VLADCLHMRFLAPKI-ENEYETWTMKNVYNSWTYNVQYWKQGT 144 (201)
T ss_dssp EEEEETTEECCCEEE--EECHHHHSBCCCC-EEEEE-EETTEEEEEEECCEE-ECSSCEEEHHHHCTTCEEEEEEEETTC
T ss_pred EEEecCCCcCcceee--eeeecccCeeCCC-EEEEE-EeCCEEEEEEcCCCc-cCCCcccCHHHhCCceEEEEEEEECCC
Confidence 999999988877642 2322222334566 57763 456899999998532 2224 38999999998764
Q ss_pred CCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC--CCCCCCCceEEEeecce
Q psy14886 432 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND--VGPGPESEVVTIWHDPL 487 (505)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~--~G~g~~s~~~~~~t~p~ 487 (505)
..... +.. ....+.|.+|.|++.|.|+|+|.+. .|.|.+|+...+.|.+.
T Consensus 145 ~~~~~--~~~----~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~~ 196 (201)
T 3lqm_A 145 DEKFQ--ITP----QYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHD 196 (201)
T ss_dssp CCCEE--ECC----SSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECCCG
T ss_pred CcEEE--EEe----cCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeCCC
Confidence 43321 111 2346889999999999999999997 68999999999988754
|
| >3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=123.46 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=77.7
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
.|..+|.++.+...++++|.|+|++|+....+|.|++|+|.|+..+.. .|....+.. ....+.|.+|.|++.|
T Consensus 3 ~P~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~----~~~~~~l~~L~p~t~Y 78 (102)
T 3n1f_C 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG----SKQWHMIGHLQPETSY 78 (102)
T ss_dssp -CCSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEET----TCSEEEECSCCTTCEE
T ss_pred CCCCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcC----CceEEECCCCCCCCEE
Confidence 577899999999999999999999976667999999999999998743 676554443 2245789999999999
Q ss_pred EEEEEEecCCCCCCCCceEEEee
Q psy14886 462 EVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
.|+|+|+|.+|.|++|+.+.+.|
T Consensus 79 ~v~V~A~n~~G~G~~S~~~~~~T 101 (102)
T 3n1f_C 79 DIKMQCFNEGGESEFSNVMICET 101 (102)
T ss_dssp EEEEEEEETTEECCCCCCEEEEC
T ss_pred EEEEEEECCCcCCCCCCCEEeec
Confidence 99999999999999999998877
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-18 Score=148.65 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=109.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EEC---c--CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELL---N--SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l---~--~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|++ ... . ..........|+... +.+|.|.+++ .+|+|.|+|.+.
T Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 114 (237)
T 3sob_L 36 ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ-PEDFATYYCQQS 114 (237)
T ss_dssp EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred EeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCC-hhhCeEEEEeec
Confidence 358999999999998888999999942 111 0 000011123566543 3579999999 999999999998
Q ss_pred cccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCC-C-CCeEEEEECCEEecCCC-cE-EE--ee
Q psy14886 70 NQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGG-RR-KI--FE 140 (505)
Q Consensus 70 ~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~-~~-~~--~~ 140 (505)
+..+.... ...+.|.. .+|.+...+ ....+.+|+.++|.|.+.+. | .+.+.|+++|..+..+. .. .. ..
T Consensus 115 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~ 192 (237)
T 3sob_L 115 YTTPPTFGQGTKVEIKRTVAAPSVFIFP--PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSK 192 (237)
T ss_dssp SSSSCEECCCEEEEEECCCBCCEEEEEC--CCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTT
T ss_pred cCCceEEcCcEEEEEecCCCCCceEEeC--CChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccC
Confidence 76653322 35566643 233333222 11223468899999999874 4 57999999999876431 00 00 11
Q ss_pred ------CCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 141 ------NGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 141 ------~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
...|.|..+..+|+|.|+|.|.|.....
T Consensus 193 ~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 226 (237)
T 3sob_L 193 DSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 226 (237)
T ss_dssp TCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence 1247788888899999999999976543
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=143.17 Aligned_cols=175 Identities=15% Similarity=0.167 Sum_probs=120.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC---eEEEEECCEEecC------------------CCcEEEe------eCCCEEEcCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIGS------------------GGRRKIF------ENGNLLISPV 149 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~---~i~W~~~g~~~~~------------------~~~~~~~------~~~~l~i~~v 149 (505)
..+.+.+|++++|.|.+.+.|.+ .|.|+|++..+.. ..+.... .+.+|.|.++
T Consensus 7 ~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v 86 (218)
T 4frw_A 7 DVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA 86 (218)
T ss_dssp SEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred CeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence 45778999999999999888765 4899997643321 0111111 1246999999
Q ss_pred CCCCCEEEEEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCC
Q psy14886 150 SRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~ 228 (505)
+.+|+|.|.|.+.+..+..... ..+.+...+...........+..+..+.+.|.+.+.|.| .+.|++++..+.....
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p--~i~W~~~~~~~~~~~~ 164 (218)
T 4frw_A 87 VQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP--SVTWDTEVKGTTSSRS 164 (218)
T ss_dssp CGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC--EEEEEESSCCEEEEEE
T ss_pred cHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc--eEEEEECCcccccCce
Confidence 9999999999998876655444 444444444444444445566678889999999998876 5669998766543211
Q ss_pred CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 229 NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 229 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
... .......+.|.|..+..+|.|.|+|.|.|..|..+..+.+.+
T Consensus 165 ~~~--~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v 209 (218)
T 4frw_A 165 FKH--SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 209 (218)
T ss_dssp EEC--SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred Eec--CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence 000 111112347899999999999999999999998766665554
|
| >3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=147.72 Aligned_cols=211 Identities=16% Similarity=0.123 Sum_probs=138.2
Q ss_pred CCCCCEEEEEEEEecCCcEEEEEEEEE----cCCCCCCCceEEEEEeCCeEEEEeecCCCC------CCCCceEEEEEEe
Q psy14886 249 SFADAGEYECVVKSTVGKISTKTTVIV----EGPPGLPGGVQVVEVHKTSATIQWTDGATN------GRPITHYKIIART 318 (505)
Q Consensus 249 ~~~~~g~y~C~~~n~~g~~~~~~~l~v----~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~------~~~i~~y~v~~~~ 318 (505)
.....+.++..|.| .|....+....+ ..+++||. +.+.. ...++.|+|.|+... .+.+..|.|.|+.
T Consensus 69 ~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~-~~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~ 145 (306)
T 3s98_A 69 NVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLEA-EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWK 145 (306)
T ss_dssp CTTSCEEEEEEEEC-SSCEEEEECCCBCHHHHCBCCCCE-EEEEE-CSSCEEEEEECC---CCCC-----CCEEEEEEEE
T ss_pred CCCCcEEEEEEEEe-CCcCCCEeeeeEechhhCccCCCe-EEEEE-cCCEEEEEEECCCCCCcceeccCCcEEEEEEEEE
Confidence 45566777888888 664433222212 13456665 66554 446899999966542 3578999999987
Q ss_pred CCCCC-eEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEc--CCCcCCCCCCCCCccCCCCCCCCCCceeee
Q psy14886 319 NWNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN--ELGYGEPSSPSPQYNTPADKPYQAPSRIGG 395 (505)
Q Consensus 319 ~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n--~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~ 395 (505)
.+... |... . ....+.+.+ |.+++.|.|+|+|.| ..|.|++|... .+.|..+.|+.+|.++.+
T Consensus 146 ~~~~~~~~~~-~-----------~~~~~~l~~-L~p~t~Y~~~V~A~~~~~~g~g~~S~~~-~~~T~~~~p~~~P~~v~~ 211 (306)
T 3s98_A 146 NSSGVEERIE-N-----------IYSRHKIYK-LSPETTYCLKVKAALLTSWKIGVYSPVH-CIKTTVENELPPPENIEV 211 (306)
T ss_dssp TTTCCCEEEE-E-----------ECTEEEECS-CCTTCEEEEEEEEEEGGGTEECCCCCCE-EEECCSCCSSCCCEEEEE
T ss_pred CCCCCeEEEe-c-----------ccceEEEcc-CCCCCeEEEEEEEEEccCCCCCCCCCcE-eeEecCCCcCCCCceEEE
Confidence 76543 4321 1 112444555 999999999999999 67899888875 677778888889999998
Q ss_pred eccccccEEEEEEeCCccccCCCCceEEEEEEE--------cCCCCcEEEEeeecCceeeEEEEcCC-ccceeeEEEEEE
Q psy14886 396 GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK--------KNDTEFQSETLKEYGNVGIAVVRIPS-EFYYTEYEVKVQ 466 (505)
Q Consensus 396 ~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~-L~p~~~Y~~~v~ 466 (505)
... .+++.|.|+++ .. -.+|.++|.. .+..+|......... ..+.+.+.+ |.+...|.|||+
T Consensus 212 ~~~-~~s~~l~W~~p--~~----~~~~~v~~~~gy~~~~~~~~~~~W~~~~~c~~~--~~~~c~~~~~~~~~~~Y~~RV~ 282 (306)
T 3s98_A 212 SVQ-NQNYVLKWDYT--YA----NMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENV--KTTQCVFPQNVFQKGIYLLRVQ 282 (306)
T ss_dssp EEE-TTEEEEEEECS--SS----SCEEEEEEEEGGGGSCC----CCCEECGGGTTB--SSSEEEEEGGGSCSSEEEEEEE
T ss_pred EEe-cCEEEEEeCCC--CC----cEEEEEEEehhhhhccccccccCceECCCceeC--CCccccCchhhcccCCEEEEEE
Confidence 654 47899999983 21 2356666653 346678743222222 223444555 334459999999
Q ss_pred EecCCCCCCCCceEEEeec
Q psy14886 467 AINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t~ 485 (505)
|.|..|.|.+|+...+.|.
T Consensus 283 A~n~~~~s~~s~~~~~~~~ 301 (306)
T 3s98_A 283 ASDGNNTSFWSEEIKFDTE 301 (306)
T ss_dssp EECSSCBCCCCCCEEEEC-
T ss_pred EccCCCccccccccccCcc
Confidence 9999999999999998775
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=138.14 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=110.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC---eEEEEECCEE-----------ecC------CCcEEEee------CCCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP---KFVWKKDGNI-----------IGS------GGRRKIFE------NGNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~---~i~W~~~g~~-----------~~~------~~~~~~~~------~~~l~i~~v~ 150 (505)
..+.+.+|++++|.|.+.+.+.+ .|.|+|++.. +.. ..+..... +.+|.|.+++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 91 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT 91 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence 34678999999999998765443 7999986532 110 11222221 1259999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCEEecCCCCC
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLN 229 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~~~~~~~~~ 229 (505)
.+|+|.|+|.|.|..|.....+.+.+...+.. ......+..|..+.|.|.+.+. |.| .+.|++++..+.....
T Consensus 92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~---~~~~~~~~~g~~v~l~c~~~g~~P~p--~i~W~k~~~~~~~~~~- 165 (226)
T 4f80_A 92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSD---LHVDVKGYKDGGIHLECRSTGWYPQP--QIQWSNNKGENIPTVE- 165 (226)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCC---CEEEEEEEETTEEEEEEEEEEEBSCC--EEEEECTTSCBCCCEE-
T ss_pred hHHCeeEEEEEECCCcEEEEEEEEeeccceec---ccceeeeccCCceeeEEEeccCCCCC--EEEEEECCceEcCCCc-
Confidence 99999999999998777665555554332221 1234567789999999999985 554 6679986543322110
Q ss_pred cccCCeeeecCCe---EEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 230 ELETPNINIDGGL---LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 230 ~~~~~~~~~~~~~---l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
.......++. +.+..+..+|.|.|+|.|.|..|..+..+.|.|..
T Consensus 166 ---~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 166 ---APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp ---CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred ---eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 0111112222 23345677899999999999999999888888865
|
| >1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=126.64 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=89.8
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.|++|... .+.|.++.|..+|.++.+.. +.++|.|+|++|+....+|.|++|+|.|+..+...+... .. ..
T Consensus 1 G~G~~S~~v-~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~--~~----~~ 72 (117)
T 1wj3_A 1 GSSGSSGTV-NVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVL--NT----NK 72 (117)
T ss_dssp CCCCCCCCC-CCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEE--EE----SS
T ss_pred CcCCCCCCE-EEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCCeEE--eC----CC
Confidence 567777664 78888999998999999876 788999999997778899999999999999875555221 11 11
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.+.+. |.+++.|.|+|+|+|.+|.|++|+.+.++|..
T Consensus 73 ~~~~~~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~~ 110 (117)
T 1wj3_A 73 TSAELV-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110 (117)
T ss_dssp SEEEEE-CCCSSCEEEEEEEEESSCCCCBCCCEEECCCC
T ss_pred cEEEEE-CCCCCEEEEEEEEECCCccCCCCCCEEEEcCC
Confidence 345556 89999999999999999999999999998864
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-17 Score=133.71 Aligned_cols=163 Identities=11% Similarity=0.127 Sum_probs=116.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC--eEEEEECCEEecCCCcEE-EeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRK-IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~~~~~-~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
..+.+.+|++++|.|.+ +.|.+ .|.|++.+..+ .+.. ......|.|.+++.+|.|.|.|.|.+..+.....+.
T Consensus 15 ~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ 90 (210)
T 1gsm_A 15 PVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ 90 (210)
T ss_dssp SEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEE
Confidence 44678999999999999 88877 99999855433 2222 222346999999999999999999999888778899
Q ss_pred EEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCC--CeEEEEEeCCEEecCCCCCc--c---------cCCeeeec
Q psy14886 174 LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELL--DVAYIWTHNGVRIGNMDLNE--L---------ETPNINID 239 (505)
Q Consensus 174 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~~~~~w~~~~~~~~~~~~~~--~---------~~~~~~~~ 239 (505)
|.|..+|..+...+. ....|+.+ |.|.+.+. |.+ .+++.|++++..+....... . ........
T Consensus 91 ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (210)
T 1gsm_A 91 LLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 167 (210)
T ss_dssp EEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEE
T ss_pred EEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEE
Confidence 999988876654432 45567778 99999986 544 57899999999985432100 0 00111111
Q ss_pred CCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 240 GGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 240 ~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.+.+.+.....++.+.|+|.|.+.+-.
T Consensus 168 ts~~~~~~~~~D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 168 TERWRLPPLGTPVPPALYCQATMRLPG 194 (210)
T ss_dssp EEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred EEEEeecCCcccCCceEEEEEEeeCCC
Confidence 233444466667779999999876543
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=143.86 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=113.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc------CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN------SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~------~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C 66 (505)
|.+|++++|.|.+.+.|.+.+.|+|.. ..+. .........+|+.+. ..+|.|.+++ .+|+|.|+|
T Consensus 15 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~-~~DsG~Y~C 93 (256)
T 3tf7_C 15 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH-RSDSAVYFC 93 (256)
T ss_dssp EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC-GGGCSEEEE
T ss_pred ecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC-cccCEEEEE
Confidence 468999999999998889999999932 1110 000000123455441 2479999999 999999999
Q ss_pred EEEcccCc----eEeeEEEEEEe-------------------cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEE
Q psy14886 67 RAKNQLKT----RYSSAQLRVLT-------------------LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123 (505)
Q Consensus 67 ~~~~~~~~----~~~~~~l~v~~-------------------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W 123 (505)
.+.+..+. ....+.|.|.. .+|.+... +....+.+|++++|.|.+.+. .+.+.|
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~-~~~v~W 170 (256)
T 3tf7_C 94 AVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQS--PRNKVTVTGENVTLSCRQTNS-HNYMYW 170 (256)
T ss_dssp EEECTTCTTCEEECCCEEEEEEC---------------------CCEEES--CSEEEEETTCCEEECEEECSC-CSEEEE
T ss_pred EEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEec--CCEEEEeCCCcEEEEEEcCCC-ceEEEE
Confidence 99986542 12235677764 12333333 355678899999999999877 679999
Q ss_pred EECC--EE---ec------------CCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCCceeee--EEEEEE
Q psy14886 124 KKDG--NI---IG------------SGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDESK--GRLIVL 177 (505)
Q Consensus 124 ~~~g--~~---~~------------~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v~ 177 (505)
++.. .. +. ...++.... ..+|.|.+++.+|+|.|+|.|.|..|..... ..|.|.
T Consensus 171 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~ 247 (256)
T 3tf7_C 171 YRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVL 247 (256)
T ss_dssp EEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEE
Confidence 9832 11 10 012222221 2359999999999999999999876654332 445554
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=150.75 Aligned_cols=165 Identities=18% Similarity=0.284 Sum_probs=109.7
Q ss_pred CCCCCceEEEEEEeccC-----CCeEEEEECC--EECc---CC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVP-----DVTYSWFRNG--ELLN---SE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----~~~~~W~~~~--~~l~---~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|.+.+.| .+.+.|+|++ ..+. .. ........|+... ..+|.|.+++ .+|+|.|
T Consensus 50 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y 128 (254)
T 2c1o_A 50 VTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVE-AEDLGIY 128 (254)
T ss_dssp ECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCSEE
T ss_pred ecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCC-cccCEEE
Confidence 46899999999998876 4899999843 2221 00 0001123566552 2389999999 9999999
Q ss_pred EEEEEcccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCCcEE--
Q psy14886 65 QCRAKNQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGRRK-- 137 (505)
Q Consensus 65 ~C~~~~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~~~~-- 137 (505)
+|.+.|..+.... ...+.|.. .+|.+...+.. ....+|+.++|.|.+.+. |. +.+.|+++|..+.......
T Consensus 129 ~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~ 206 (254)
T 2c1o_A 129 YCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWT 206 (254)
T ss_dssp EEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEEC
T ss_pred EEEEEcCcceEecCCEEEEECCCCCCCeeEeecCC--hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccc
Confidence 9999987654332 34566643 23444332211 113357899999999874 44 4799999998876541110
Q ss_pred E--------eeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 138 I--------FENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 138 ~--------~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
. .....|.|.++..+|+|.|+|.|.|.....
T Consensus 207 ~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 207 DQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred cccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 0 112358999999999999999999976543
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=147.79 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=110.2
Q ss_pred CCCCceEEEEEEeccCCC---eEEEEECCEECcCC---------CCCCCCCCcEEE-----------ECCeEEEEcCCCC
Q psy14886 2 DNQADLTWTCEAFGVPDV---TYSWFRNGELLNSE---------TLPLEDQDRYFI-----------QDNVLTIRYLNPE 58 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~---~~~W~~~~~~l~~~---------~~~~~~~~~~~~-----------~~~~L~i~~~~~~ 58 (505)
.+|++++|.|.+.+.+.+ .|.|+|++..+... ........+... .+++|.|.+++ .
T Consensus 14 ~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~-~ 92 (225)
T 4fmk_A 14 RLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLR-V 92 (225)
T ss_dssp ETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCC-G
T ss_pred ecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCC-H
Confidence 479999999999876654 48999976433110 000011122221 24679999999 9
Q ss_pred CCCeEEEEEEEcccCceEee-EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcE
Q psy14886 59 RDPAMYQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRR 136 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~~~~~~-~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~ 136 (505)
+|+|.|+|.+.+..+..... ..+.+. .+|.....+ .......++.+.+.|.+ .+.|.+.+.|++++..+......
T Consensus 93 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~ 169 (225)
T 4fmk_A 93 EDEGNYTCEFATFPNGTRRGVTWLRVI-AQPENHAEA--QEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE 169 (225)
T ss_dssp GGCEEEEEEEEEETTEEEEEEEEEEEE-BCCEEEEEE--CCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred HHCcceEEEEEeCCCcceeeeeeeeee-cCCceeecc--cceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence 99999999999876655444 334444 344433322 22335567777777765 55678899999987654332222
Q ss_pred EEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 137 KIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 137 ~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....++ .|.|.++..+|+|.|+|.|.|..+.......+.
T Consensus 170 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~ 214 (225)
T 4fmk_A 170 PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT 214 (225)
T ss_dssp ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence 222222 499999999999999999999887765544333
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-18 Score=140.63 Aligned_cols=152 Identities=14% Similarity=0.200 Sum_probs=107.9
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC--CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~ 175 (505)
.+.+|++++|.|.+.+. .+.+.|+|+|..+... .......++.|.|.+++.+|+|.|+|.+.+..+.. ...+.|.
T Consensus 14 ~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~ 92 (188)
T 1oll_A 14 MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 92 (188)
T ss_dssp EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence 58899999999998764 4689999999876421 00011123469999999999999999998865432 3446777
Q ss_pred EEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCC
Q psy14886 176 VLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252 (505)
Q Consensus 176 v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 252 (505)
|.. +|.+. ..+ ...+..|+.++|.|.+.+. . ..+.|+++|..+... .........|.|..+..+|
T Consensus 93 V~~~~~~p~i~-~~p-~~~v~~G~~v~L~C~~~~~-~--~~~~w~k~g~~~~~~-------~~~~~~~~~L~I~~v~~~d 160 (188)
T 1oll_A 93 VTEMYDTPTLS-VHP-GPEVISGEKVTFYCRLDTA-T--SMFLLLKEGRSSHVQ-------RGYGKVQAEFPLGPVTTAH 160 (188)
T ss_dssp EESCSCCCEEE-EES-CSEEETTCEEEEEEECSSS-C--SEEEEEEESSSCEEE-------EEECSSEEEEEEEECCGGG
T ss_pred ecccCCCCeEE-ECC-CCccccCCEEEEEEEcCCC-C--CEEEEEECCcccccc-------ccCCCceeEEEECCCCcCC
Confidence 764 33333 222 4567899999999998653 2 367899987554320 1112234689999999999
Q ss_pred CEEEEEEEEecC
Q psy14886 253 AGEYECVVKSTV 264 (505)
Q Consensus 253 ~g~y~C~~~n~~ 264 (505)
.|.|+|.|.|..
T Consensus 161 ~G~Y~C~a~n~~ 172 (188)
T 1oll_A 161 RGTYRCFGSYNN 172 (188)
T ss_dssp CEEEEEECEEET
T ss_pred CcEEEEEEEcCC
Confidence 999999998864
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=144.70 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=109.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC---EE--CcC--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG---EL--LNS--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~---~~--l~~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|.+ .+ +.. .........|+... ..+|.|.+++ .+|+|.|+|.+.
T Consensus 13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 91 (213)
T 3r06_A 13 ASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLE-SEDIGSYYCQQY 91 (213)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCSEEEEEEC
T ss_pred ecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCC-cccCEEEEEecc
Confidence 468999999999998888999999932 11 000 00001124566543 2389999999 999999999998
Q ss_pred cccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCCCC--CeEEEEECCEEecCCC-c-EEEe--e
Q psy14886 70 NQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGG-R-RKIF--E 140 (505)
Q Consensus 70 ~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~--~~i~W~~~g~~~~~~~-~-~~~~--~ 140 (505)
+..+.... ...|.|.. .+|.+...+ ....+..|+.++|.|.+.+.++ +.+.|+++|..+..+. . .... .
T Consensus 92 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~--~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~ 169 (213)
T 3r06_A 92 YNYPWTFGPGTKLEIKRADAKPTVSIFP--PSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSK 169 (213)
T ss_dssp SSSSCEECCCEEEEECCCCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTT
T ss_pred cCCceEEcCCceEEEeccCCCceeeeeC--CCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCC
Confidence 86543333 45566632 244443332 1223457889999999987643 4999999999886531 1 1111 1
Q ss_pred CC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 141 NG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 141 ~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
++ .|.|.....+|+|.|+|.|.|....
T Consensus 170 ~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 170 DSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp TCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred CCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 22 3777777788999999999987543
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-18 Score=145.47 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=107.9
Q ss_pred CCCCCceEEEEEEe-ccC-CCeEEEEECC--EECc---CC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAF-GVP-DVTYSWFRNG--ELLN---SE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p-~~~~~W~~~~--~~l~---~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.+. +.+ .+.|.|+|++ ..+. .. ........|+... ..+|.|.+++ .+|+|.|+|.
T Consensus 12 v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 90 (216)
T 2xzc_L 12 AAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQ-TGDEADYYCG 90 (216)
T ss_dssp ECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCC-GGGCEEEEEE
T ss_pred ecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCC-cccCEEEEEE
Confidence 46899999999964 332 5789999953 2211 00 0001123466553 2389999999 9999999999
Q ss_pred EEcccC-c-eEeeEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCCCcEE--Ee
Q psy14886 68 AKNQLK-T-RYSSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSGGRRK--IF 139 (505)
Q Consensus 68 ~~~~~~-~-~~~~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~~~~~--~~ 139 (505)
+.+..+ . ......|.|.. .+|.+...+... ...+|+.++|.|.+.+ .|.+ .+.|+++|..+....... ..
T Consensus 91 ~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~ 168 (216)
T 2xzc_L 91 TWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD--EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQ 168 (216)
T ss_dssp EECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH--HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCC
T ss_pred EEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh--hhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcc
Confidence 998765 1 22245566643 234433322111 1236889999999988 4554 999999999876541111 11
Q ss_pred --eCC------CEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 140 --ENG------NLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 140 --~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
.++ .|.|..+..+|+|.|+|.|.|.....
T Consensus 169 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 169 DSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp CTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred cCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 112 48889999999999999999876543
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=148.60 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=108.5
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECcC-------CC---CCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLNS-------ET---LPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~~-------~~---~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ .+.+.|+|+ +..+.. .. ......+|+.+. ..+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 90 (219)
T 1c1e_H 12 KKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK-NED 90 (219)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC-ccc
Confidence 46899999999998765 689999996 332210 00 000123566653 2589999999 999
Q ss_pred CeEEEEEEEcccCce----EeeEEEEEEecC---CCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEec
Q psy14886 61 PAMYQCRAKNQLKTR----YSSAQLRVLTLK---PSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIG 131 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~----~~~~~l~v~~~~---p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~ 131 (505)
+|.|+|.+.+..+.. ...+.|.|...+ |.+...+ +...+.+|+.+.|.|.+.+ .|.+ .|.|+++|..+.
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 168 (219)
T 1c1e_H 91 MATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 168 (219)
T ss_dssp CEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred CEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEec--CccccccCCeEEEEEEcccccCCCeEEEEEeCCcccc
Confidence 999999999875321 124667776421 3332221 1113568999999999998 7888 999999987642
Q ss_pred C--CCcEE----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 132 S--GGRRK----IFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 132 ~--~~~~~----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
. ..... ......|.|... ..|.|.|+|.|.|..+.....
T Consensus 169 ~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~ 213 (219)
T 1c1e_H 169 VHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVD 213 (219)
T ss_dssp EEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEE
T ss_pred eEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEE
Confidence 1 11100 011124788444 446699999999987765443
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-19 Score=152.49 Aligned_cols=167 Identities=20% Similarity=0.264 Sum_probs=111.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc---CC--CCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN---SE--TLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~---~~--~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|+ +..+. .. ........|+.+. + .+|.|.+++ .+|+|.|+|.+.
T Consensus 11 v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 89 (212)
T 1nfd_E 11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQ-PEDEAAYYCLSS 89 (212)
T ss_dssp EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCC-GGGCSEEEEEEE
T ss_pred EeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCC-cccCEEEEEEEE
Confidence 46899999999998777778999995 22221 00 0000123566543 2 389999999 999999999999
Q ss_pred cccC-ce--EeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCCcEE----
Q psy14886 70 NQLK-TR--YSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGRRK---- 137 (505)
Q Consensus 70 ~~~~-~~--~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~~~~---- 137 (505)
|..+ .. .....+.|.. .+|.+...+. ...+.+|+.++|.|.+.+. |. +.+.|+++|..+.......
T Consensus 90 n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~ 167 (212)
T 1nfd_E 90 YGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPP--SPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSK 167 (212)
T ss_dssp ETTTTEEEECCCEEEEEECCCCBCCEEECCCC--CHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBC
T ss_pred cccCcccccCCceEEEEccCCCCCCEEEeeCC--chHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCcee
Confidence 6322 11 2235566642 2444444331 1224579999999999886 54 7999999999886432210
Q ss_pred ----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 138 ----IFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 138 ----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
....+.|.|.++..+|+|.|+|.|.|..+....
T Consensus 168 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 168 QGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp SSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred cCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 111245889999999999999999998765443
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-18 Score=147.07 Aligned_cols=166 Identities=21% Similarity=0.278 Sum_probs=112.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc---C--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN---S--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~---~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+. |.+.+.|+|+ +..+. . .........|+... ..+|.|.+++ .+|+|.|+|.+.
T Consensus 12 v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 88 (211)
T 3tv3_L 12 GSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQ-TDDEAVYYCGSL 88 (211)
T ss_dssp ECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCC-GGGCEEEEEEEE
T ss_pred EcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCC-hhHCEEEEEEEe
Confidence 46899999999998 8899999994 22211 0 00001123455532 2479999999 999999999999
Q ss_pred cccC--ceEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC--CCCeEEEEECCEEecCCCc---EEEe
Q psy14886 70 NQLK--TRYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA--PKPKFVWKKDGNIIGSGGR---RKIF 139 (505)
Q Consensus 70 ~~~~--~~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~~g~~~~~~~~---~~~~ 139 (505)
+..+ .....+.|.|.. .+|.+...+.. ..+.+|+.++|.|.+.+. |.+.+.|+++|..+..+.. ....
T Consensus 89 ~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~ 166 (211)
T 3tv3_L 89 VGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS--SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ 166 (211)
T ss_dssp ETTTEEEECCCEEEEECCSCCBCCEEEEECCC--HHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred cCCCceeECCCceEEEeCCCCcCCeeEecCCc--hhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence 8776 233356777763 24444433311 223479999999999885 3579999999998854211 1111
Q ss_pred eC------CCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 140 EN------GNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 140 ~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
.+ ..|.|.++..+|.|.|+|.|.|..+.....
T Consensus 167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~ 204 (211)
T 3tv3_L 167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 204 (211)
T ss_dssp TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence 11 248888888889999999999987655443
|
| >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=173.73 Aligned_cols=145 Identities=15% Similarity=0.233 Sum_probs=105.9
Q ss_pred CCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCC--------------CCCeEEeeeccccceee-eecCcee
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNW--------------NSTWFNVSEHVIGKEVD-RYTGRKE 344 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~--------------~~~w~~~~~~~~~~~~~-~~~~~~~ 344 (505)
.|.++.+..++.+++.|+|+++.. ++.++.+|.|+|+... ...|............. .......
T Consensus 471 ~~~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~ 550 (897)
T 2dtg_E 471 ELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPG 550 (897)
T ss_dssp CBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCE
T ss_pred ceeEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccc
Confidence 345678889999999999999874 4568999999988652 34565533221100000 0001233
Q ss_pred eEEeeeccCCceeEEEEEE-EcCCCc----CCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCC
Q psy14886 345 ASIENVLVPWSTYEFKVIA-GNELGY----GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419 (505)
Q Consensus 345 ~~~~~~L~~~~~y~~~v~a-~n~~G~----~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i 419 (505)
+.+.+ |.|++.|.|+|+| .|..|. +.+|... .++|.+..| .+|.++.+...+.++|.|.|+| +.+.+|.|
T Consensus 551 ~~l~~-L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v-~~~T~~~~P-s~P~~l~~~~~s~tsI~LsW~p--P~~~nG~I 625 (897)
T 2dtg_E 551 WLMRG-LKPWTQYAIFVKTLVTFSDERRTYGAKSDII-YVQTDATNP-SVPLDPISVSNSSSQIILKWKP--PSDPNGNI 625 (897)
T ss_dssp EEECS-CCSSCBCCBEEEECCCCCSSCCCCCCBCCCB-CCBCCCCCC-CCCEEEEEEECSSSCEEEEEEC--CCCSSSSC
T ss_pred eEeCC-CCCCcEEEEEEEEEEeccCCccccCCccceE-EEECCCCCC-cCCcceEEEeCCCCEEEEEEeC--CCCCCCCe
Confidence 44444 9999999999999 999998 5666653 667766666 5999999999999999999998 47788899
Q ss_pred ceEEEEEEEcC
Q psy14886 420 IYYKIFWRKKN 430 (505)
Q Consensus 420 ~~Y~v~~~~~~ 430 (505)
++|+|+|+..+
T Consensus 626 ~~Y~V~~~~~~ 636 (897)
T 2dtg_E 626 THYLVFWERQA 636 (897)
T ss_dssp SEEECCEEEEC
T ss_pred eEEEEEEEECC
Confidence 99999998754
|
| >1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=142.49 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=127.1
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCC-ceEEEEEEeCCCC----CeEEeeeccccceeeeecCceeeEEeee
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI-THYKIIARTNWNS----TWFNVSEHVIGKEVDRYTGRKEASIENV 350 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i-~~y~v~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (505)
..+|..|.++.+......+++++|+++.+++.+. ..|.+.|+..... .|..+...... ......+...+
T Consensus 27 ~~pP~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~------~~~~C~~~~~~ 100 (236)
T 1axi_B 27 TNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSA------GENSCYFNSSF 100 (236)
T ss_dssp -----CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSSTT------CTTEEEECGGG
T ss_pred CCCCCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCC------CCEEEEECCcC
Confidence 3578899999888788899999999866555442 5788888765432 35554322210 01122222334
Q ss_pred ccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceee--eecccc----ccEEEEEEeCCcc-ccCC-CCceE
Q psy14886 351 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIG--GGGGKI----GDLSISWEPLPRE-KQNA-PNIYY 422 (505)
Q Consensus 351 L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~--~~~~~~----~~v~l~W~~~~~~-~~~~-~i~~Y 422 (505)
|.+++.|.|+|.| | .+.+. . ..+.......+.||.++. +...+. ..+.|+|++|... ..+| .++.|
T Consensus 101 l~~~~~Y~~~V~a-N-~~~s~---~-~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Y 174 (236)
T 1axi_B 101 TSIAIPYCIKLTS-N-GGTVD---E-KCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEY 174 (236)
T ss_dssp CCSSSEEEEEEEE-T-TEEEE---E-EEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEE
T ss_pred CcccceEEEEEEE-C-CccCC---C-eEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEE
Confidence 8889999999999 9 33332 2 134444556678999995 443322 4599999996443 2356 68999
Q ss_pred EEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCC--CCCCCceEEEeec
Q psy14886 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG--PGPESEVVTIWHD 485 (505)
Q Consensus 423 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G--~g~~s~~~~~~t~ 485 (505)
.|+|+..+...|...... ..+.+.|.+|.|++.|.|+|+|.+..| .|++|+.+.+.|+
T Consensus 175 evry~~~~~~~w~~~~~~-----~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p 234 (236)
T 1axi_B 175 ELQYKEVNETKWKMMDPI-----LTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP 234 (236)
T ss_dssp EEEEEETTCSSCEECCCB-----SSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred EEEEEECCCCceEEEecc-----CCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECC
Confidence 999999987788754321 235778889999999999999999999 8999998887664
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-15 Score=124.59 Aligned_cols=236 Identities=14% Similarity=0.279 Sum_probs=150.5
Q ss_pred CCCCCceEEEEEEec-cC---CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFG-VP---DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p---~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+..|+.++|.|.+.+ .| +..++|+|||.++.. ..+.|.+..+. ..|+|.|+|.+.+..+...
T Consensus 14 i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-------------aT~tLti~s~t-~sdSG~YqCvVTDa~Gcs~ 79 (304)
T 3shs_A 14 FLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-------------NTATLTVADAT-SENAGSYKVTVQDTDTMTS 79 (304)
T ss_dssp BCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-------------CSSEEEESSCC-GGGCEEEEEEEEETTTCCE
T ss_pred ccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-------------CcceEEeeecc-ccCCeEEEEEEEECCCCee
Confidence 357999999999965 56 568999999998762 24588899999 9999999999998887765
Q ss_pred eeEEEEEEecCC-CccCCCCCceEEeeCCCeEEEEeec--CC-CC-----CCeEEEEECCEEecCCCcEEEeeCCCEEEc
Q psy14886 77 SSAQLRVLTLKP-SFKKRPLESETYAGEGGNVTIFCNP--EA-AP-----KPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147 (505)
Q Consensus 77 ~~~~l~v~~~~p-~~~~~~~~~~~~v~~g~~v~l~C~~--~~-~p-----~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~ 147 (505)
.+..+.|..... .+.... +....+..|..+.|.+.+ .| .+ ..++.|++++..+.. ...|.+.
T Consensus 80 tSs~VtVT~~a~l~i~it~-P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg--------Aq~lT~s 150 (304)
T 3shs_A 80 VESEVFLMEEAELIVNITE-PQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------TQDITIQ 150 (304)
T ss_dssp EECCCEEECBCCEEEEESS-CSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES--------SSEEEEC
T ss_pred eeeeEEEeccCceeEEecC-CCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC--------cccccee
Confidence 554445543222 222222 344556678899999886 44 33 459999999987643 2246777
Q ss_pred CCCCCCCEEEEEEEEcCCCceeee--EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeee--------cCCCCeEEEEE
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESK--GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT--------EELLDVAYIWT 217 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--------~~~~~~~~~w~ 217 (505)
.....+.|.|+|.+.+..+....+ +.+.+...+ +....-....+..|+.+.|...+.. .|...+.+.|+
T Consensus 151 S~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (304)
T 3shs_A 151 EFTADKNGVYTVKVWGESEDSAASASTKIMLATMN-VDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWY 229 (304)
T ss_dssp SCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEE-EEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEE
T ss_pred eEEecCCeEEEEEEEcCCCCcccccceEEEEEccc-cchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEE
Confidence 788889999999999987644333 333332211 1112234556778888888665532 23334567787
Q ss_pred eCC-EEecCC----CCC-cccCCeeeecCCeEEEecCCCCCCEEEEEEEE
Q psy14886 218 HNG-VRIGNM----DLN-ELETPNINIDGGLLEITNASFADAGEYECVVK 261 (505)
Q Consensus 218 ~~~-~~~~~~----~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 261 (505)
... ..+.+. ... ..+... ...++.|.-.....+|...|.|.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 3shs_A 230 LQREGQLSPTLIGSEVGEALEGFS-ITPDGHLFKESATYDDTAKFWCVAK 278 (304)
T ss_dssp EECTTCCSCEEEESSSEECGGGEE-ECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred EeecCccCchhhhhhhhhhhccce-eCCCcceeecccccccchheeeHHH
Confidence 521 111110 000 000011 1124566666777888999999984
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=148.74 Aligned_cols=167 Identities=21% Similarity=0.262 Sum_probs=109.5
Q ss_pred CCCCCceEEEEEEeccC-CC-eEEEEECC--EEC---cCC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP-DV-TYSWFRNG--ELL---NSE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~-~~~W~~~~--~~l---~~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.+.+.+ .+ .+.|+|++ ..+ ... ........|+... ..+|.|.+++ .+|+|.|+|.
T Consensus 31 v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 109 (234)
T 2j6e_L 31 GTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR-SEDEADYYCA 109 (234)
T ss_dssp BCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC-STTCSEEEEE
T ss_pred eeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC-HHHCEEEEEE
Confidence 46899999999998754 34 79999963 221 000 0000123466543 2489999999 9999999999
Q ss_pred EEcccCc---eEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCCcEE--
Q psy14886 68 AKNQLKT---RYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGRRK-- 137 (505)
Q Consensus 68 ~~~~~~~---~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~~~~-- 137 (505)
+.+..+. ....+.|.|.. .+|.+...+.. ..+.+|+.++|.|.+.+. |. +.+.|+++|..+..+....
T Consensus 110 ~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~ 187 (234)
T 2j6e_L 110 TWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS--SEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKP 187 (234)
T ss_dssp EEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC--HHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCC
T ss_pred EEcCCcceeEecCCEEEEEecCCCCCCcccccCCC--hhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCc
Confidence 9987762 12234555532 23444332211 123468899999999885 43 4999999999886431110
Q ss_pred -EeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 138 -IFEN------GNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 138 -~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
...+ ..|.|.++..+|.|.|+|.|.|.......
T Consensus 188 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 227 (234)
T 2j6e_L 188 SKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK 227 (234)
T ss_dssp CCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence 0111 24888899999999999999998665433
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=149.62 Aligned_cols=164 Identities=16% Similarity=0.257 Sum_probs=109.3
Q ss_pred CCCCCceEEEEEEeccC-----CCeEEEEECC--EEC---cCC--CCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVP-----DVTYSWFRNG--ELL---NSE--TLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----~~~~~W~~~~--~~l---~~~--~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|.+.+.+ .+.|.|+|++ ..+ ... .......+|+... + .+|.|.+++ .+|+|.|
T Consensus 46 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y 124 (252)
T 3bkj_L 46 VNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVE-AEDLGVY 124 (252)
T ss_dssp ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEE
T ss_pred EeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCC-cccCEEE
Confidence 46899999999998876 5899999964 111 000 0000123566553 1 289999999 9999999
Q ss_pred EEEEEcccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCCCcEE--
Q psy14886 65 QCRAKNQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK-- 137 (505)
Q Consensus 65 ~C~~~~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~~~~~-- 137 (505)
+|.+.+..+.... ...|.|.. .+|.+...+.. ..+.+|+.++|.|.+.+. |.+ .+.|+++|..+.......
T Consensus 125 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~ 202 (252)
T 3bkj_L 125 YCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWT 202 (252)
T ss_dssp EEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEEC
T ss_pred EEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC--hhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecC
Confidence 9999887553322 34566653 23444332211 113468999999999884 543 899999999876441111
Q ss_pred --EeeCC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 138 --IFENG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 138 --~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
...++ .|.|.++..+|+|.|+|.|.|....
T Consensus 203 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 203 DQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 11122 3889999999999999999987544
|
| >3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=149.44 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=142.0
Q ss_pred cCCCCCCEEEEEEEEecCCcEEEEEEEEE----cCCCCCCCceEEEEEeCCeEEEEeecCCCCC-------CCCceEEEE
Q psy14886 247 NASFADAGEYECVVKSTVGKISTKTTVIV----EGPPGLPGGVQVVEVHKTSATIQWTDGATNG-------RPITHYKII 315 (505)
Q Consensus 247 ~~~~~~~g~y~C~~~n~~g~~~~~~~l~v----~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~-------~~i~~y~v~ 315 (505)
.+.....+.++..|.| .+.......... .....||. +.+. ...+++.|+|. |...+ +.+.+|.|.
T Consensus 71 ~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP~-v~~~-~~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~ 146 (414)
T 3se4_A 71 KLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE-VHLE-AEDKAIVIHIS-PGTKDSVMWALDGLSFTYSLV 146 (414)
T ss_dssp CCCTTSCEEEEEEEEE-TTEEEEEECCCBCHHHHCCCCCCE-EEEE-ECSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEE
T ss_pred cccCCCcEEEEEEEee-CCcCCCEecCceeecccceeCCCe-EEEE-EcCCEEEEEEE-cCCCCCceeeeecCcEEEEEE
Confidence 3455667788888888 443322211111 22344554 6554 34568999999 54222 357899999
Q ss_pred EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcC--CCcCCCCCCCCCccCCCCCCCCCCcee
Q psy14886 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNE--LGYGEPSSPSPQYNTPADKPYQAPSRI 393 (505)
Q Consensus 316 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~--~G~~~~s~~~~~~~t~~~~p~~~P~~~ 393 (505)
|+..+...+..... ....+.+.+ |.|++.|.|+|+|.|. .|.|.+|... .+.+....|..+|.++
T Consensus 147 y~~~~~~~~~~~~~-----------~~~~~~i~~-L~p~t~Y~~~V~A~n~~~~g~g~~S~~~-~~~t~~~~~~~~P~~v 213 (414)
T 3se4_A 147 IWKNSSGVEERIEN-----------IYSRHKIYK-LSPETTYCLKVKAALLTSWKIGVYSPVH-CIKTTVENELPPPENI 213 (414)
T ss_dssp EEETTTCCEEEEEE-----------ECSEEEECC-CCTTCEEEEEEEEECTTTCCEEEECCCE-EEECCSCCSSCCCEEE
T ss_pred EEECCCCceEEEec-----------CCcEEEEcC-CCCCCeEEEEEEEEeccCCCCCccCccc-ccccccccccCCCCcc
Confidence 98887655433211 122344444 9999999999999994 6778877664 5677777778899999
Q ss_pred eeeccccccEEEEEEeCCccccCCCCceEEEEEEEc--------CCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK--------NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 394 ~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
.+...+ .++.|.|++++ ...+|.|+|+.. +...|.............+.+.. +|.+++.|.|+|
T Consensus 214 ~~~~~~-~~~~l~W~pp~------~~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~-~l~~~~~Y~~rV 285 (414)
T 3se4_A 214 EVSVQN-QNYVLKWDYTY------ANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQ-NVFQKGIYLLRV 285 (414)
T ss_dssp EEEEET-TEEEEEEECSS------SSCEEEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEG-GGSCSSEEEEEE
T ss_pred EEEEec-CCeEEEECCCC------CCeEEEEEEEehhccccccccccCceECCCccCCCCCEEcCCc-ccccCccEEEEE
Confidence 987654 67999999832 245999999974 24556533111111123333332 699999999999
Q ss_pred EEecCCCCCCCCceEEEee
Q psy14886 466 QAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t 484 (505)
+|+|..|.|++|+...+.|
T Consensus 286 ~A~n~~g~s~~s~~~~~~t 304 (414)
T 3se4_A 286 QASDGNNTSFWSEEIKFDT 304 (414)
T ss_dssp EEECSSSEEEECCCEEEET
T ss_pred EEecCCCcccccccccccc
Confidence 9999999999998888755
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=144.29 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=109.9
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEECC--EECc---CC--CCCCCCCCcEEEEC----CeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRNG--ELLN---SE--TLPLEDQDRYFIQD----NVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~~--~~l~---~~--~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++++|.|.+.+.| .+.|.|+|++ ..+. .. ........|+.+.. .+|.|.+++ .+|+|.|+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~ 91 (240)
T 1moe_A 13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE-ADDVATYY 91 (240)
T ss_dssp ECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEE
T ss_pred ecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC-hhhCEEEE
Confidence 46899999999999877 7889999952 2111 00 00011235665532 279999999 99999999
Q ss_pred EEEEcccCc-eEeeEEEEEEecC----CCccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEe------
Q psy14886 66 CRAKNQLKT-RYSSAQLRVLTLK----PSFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNII------ 130 (505)
Q Consensus 66 C~~~~~~~~-~~~~~~l~v~~~~----p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~------ 130 (505)
|.+.|..+. ....+.|.|...+ +.+.... +....+.+|++++|.|.+.+.| .+.+.|+++ +..+
T Consensus 92 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~ 170 (240)
T 1moe_A 92 CQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQ-SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRI 170 (240)
T ss_dssp EEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEE
T ss_pred EEEccCCceeecCCEEEEEecCCCCCCceEEEeC-CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEE
Confidence 999987654 2335677776532 2222111 2345689999999999998876 459999995 2211
Q ss_pred c-----------CCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEEc
Q psy14886 131 G-----------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 131 ~-----------~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
. ...++.+..+ .+|.|.+++.+|+|.|+|.|.+
T Consensus 171 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 171 DPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp ETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred cccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 0 1234444332 2599999999999999999985
|
| >1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=130.62 Aligned_cols=120 Identities=20% Similarity=0.214 Sum_probs=97.7
Q ss_pred EEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC--cEEEE
Q psy14886 361 VIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--FQSET 438 (505)
Q Consensus 361 v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~ 438 (505)
|.|.|..|.|.+|.....+.|.+..| .+|.++.+...+.+++.|.|++ +.+.+|.|++|+|+|+..+... |....
T Consensus 3 V~A~n~~G~g~~S~~~~~~~t~~~~P-~~P~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~ 79 (130)
T 1wfo_A 3 SGSSGRIGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQP--PAAPNGIILAYQITHRLNTTTANTATVEV 79 (130)
T ss_dssp CCCCCCCCCCCCCCCCSCCCCSCCCC-CCCCCCEEEEECSSEEEEECCC--CSCCCSCCCEEEEEEEESSCCCSCCCEEE
T ss_pred eEEEecccCCCCCCCcEEEEcCCCCC-CCCCceEEEecCCCEEEEEEcC--CCCCCCceEEEEEEEEECCCCCceEEEEE
Confidence 67899999999887544677777766 5899999988889999999998 4577889999999999977432 32222
Q ss_pred eeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 439 LKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 439 ~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
.. ...+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.+.
T Consensus 80 ~~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~ 124 (130)
T 1wfo_A 80 LA----PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124 (130)
T ss_dssp EC----TTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSSC
T ss_pred eC----CCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecCCC
Confidence 22 2346789999999999999999999999999999999988643
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=137.88 Aligned_cols=173 Identities=18% Similarity=0.230 Sum_probs=114.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC---CCeEEEEEC--CEEe------------cCCCcEEEeeCC---CEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP---KPKFVWKKD--GNII------------GSGGRRKIFENG---NLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p---~~~i~W~~~--g~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~G~ 156 (505)
....+.+|++++|.|.+.+.| .+.+.|+++ +..+ ....++.....+ .|.|.+++.+|+|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 87 (212)
T 1q0x_L 8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAI 87 (212)
T ss_dssp SEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEE
Confidence 456789999999999998877 478999985 2222 112344443322 69999999999999
Q ss_pred EEEEEEcCCCcee-eeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc-
Q psy14886 157 YSCTATNVHGMDE-SKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE- 230 (505)
Q Consensus 157 y~C~~~~~~g~~~-~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~- 230 (505)
|.|.+.+..+... ....|.|.. +|.+.... .......|+.+.|.|.+.+.+++.+.+.|+++|..+.......
T Consensus 88 Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~ 166 (212)
T 1q0x_L 88 YFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFP-PSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ 166 (212)
T ss_dssp EEEEEECSSCEEECCCEEEEECCSCCBCCEEEEEC-CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred EEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeC-CCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC
Confidence 9999998766432 234566632 33332222 2222335789999999998765556888999998886531100
Q ss_pred -c-cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE
Q psy14886 231 -L-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270 (505)
Q Consensus 231 -~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 270 (505)
. .........+.|.|.....+|.|.|+|.|.|........
T Consensus 167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 208 (212)
T 1q0x_L 167 PSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT 208 (212)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred ceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence 0 000011112367888888889999999999987654433
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-18 Score=148.68 Aligned_cols=163 Identities=17% Similarity=0.293 Sum_probs=109.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE----------------CCEECcCCCCCCCCCCcEEEE-----CCeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR----------------NGELLNSETLPLEDQDRYFIQ-----DNVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~----------------~~~~l~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~ 59 (505)
+.+|++++|.|.+.+.+.+.|.|+| ++...... ...+|+.+. ..+|.|.+++ .+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~L~I~~v~-~~ 87 (246)
T 4dzb_B 13 SKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQG----VEKDKFLINHASLTLSTLTVTSAH-PE 87 (246)
T ss_dssp EETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTT----CCGGGEEEEEEETTEEEEEECSCC-GG
T ss_pred EeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCc----ccCCcEEEEecCCCEEEEEECCCC-HH
Confidence 3589999999999988889999999 22222211 122566653 2379999999 99
Q ss_pred CCeEEEEEEEcccC----ceEeeEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCC--eEEEEECCE
Q psy14886 60 DPAMYQCRAKNQLK----TRYSSAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGN 128 (505)
Q Consensus 60 d~G~Y~C~~~~~~~----~~~~~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~--~i~W~~~g~ 128 (505)
|+|.|+|.+.+..+ .....+.|.|.. .+|.+.... +....+.+|+.++|.|.+.+.+++ .+.|+++|.
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 166 (246)
T 4dzb_B 88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK 166 (246)
T ss_dssp GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeec-CCchhccCCCcEEEEEEEccCcCCceEEEEEECCE
Confidence 99999999986543 122345677764 233332221 112224569999999999886544 899999999
Q ss_pred EecCCCcEEEe--------eCC------CEEEcCCCCCC-CEEEEEEEEcCCCcee
Q psy14886 129 IIGSGGRRKIF--------ENG------NLLISPVSRDD-SGIYSCTATNVHGMDE 169 (505)
Q Consensus 129 ~~~~~~~~~~~--------~~~------~l~i~~v~~~d-~G~y~C~~~~~~g~~~ 169 (505)
.+......... .++ .|.|.....+| .|.|+|.|.|......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 167 EVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp EECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred ECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 88653221110 122 27778777777 9999999998754433
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-17 Score=137.76 Aligned_cols=168 Identities=21% Similarity=0.243 Sum_probs=120.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.++|.|.+.|.|.+.|.|+|++..+... ...++.+. .++|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 30 ~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~ 103 (215)
T 3mtr_A 30 TWEGNQVNITCEVFAYPSATISWFRDGQLLPSS-----NYSNIKIYNTPSASYLEVTPDS-ENDFGNYNCTAVNRIGQES 103 (215)
T ss_dssp ECTTCCEEEEEEEEEESCCEEEEEETTEESSCS-----SSCSEEEEEETTEEEEEECCCS-GGGCEEEEEEEECSSCEEE
T ss_pred EECCCCEEEEEEEeecCCCEEEEEECCeECCCC-----CCccEEEecCCCeeEEEEecCC-hhhCeEEEEEEEECCCceE
Confidence 358999999999999999999999999998743 22344443 4689999999 9999999999999999888
Q ss_pred eeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecC----CCCCC--eEEEEECCEEecCCCcEEEe---eCCCEEEc
Q psy14886 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE----AAPKP--KFVWKKDGNIIGSGGRRKIF---ENGNLLIS 147 (505)
Q Consensus 77 ~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~----~~p~~--~i~W~~~g~~~~~~~~~~~~---~~~~l~i~ 147 (505)
..+.|.|.. +|..... . .....+..+.|.|... +.|.. .+.|.+++...-........ ....|.|.
T Consensus 104 ~~~~l~v~~-~P~~p~~---~-~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~ 178 (215)
T 3mtr_A 104 LEFILVQAD-TPSSPSI---D-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIV 178 (215)
T ss_dssp EEEEEEECC-CCCCCEE---E-EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEE
T ss_pred EEEEEEECC-CCCCCcc---e-EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEEC
Confidence 888888875 3332111 1 1234567899999742 22322 47888876432111000111 11579999
Q ss_pred CCCCCCCEEEEEEEEcCCCceeeeEEEEEEeC
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 179 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~ 179 (505)
++...+.|.|+|.|.|..|....+..+.+..+
T Consensus 179 ~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~ 210 (215)
T 3mtr_A 179 GLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210 (215)
T ss_dssp CCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred CCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence 99999999999999999998877766665443
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=142.90 Aligned_cols=165 Identities=14% Similarity=0.190 Sum_probs=115.0
Q ss_pred CceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEec---------C----CCcEE----------EeeCCCEEEcCCCC
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIG---------S----GGRRK----------IFENGNLLISPVSR 151 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~---------~----~~~~~----------~~~~~~l~i~~v~~ 151 (505)
+..+.+.+|+++.|.|.+.+.+. +.+.|++++.... . ..+.. +..++.|.|.+++.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~ 86 (231)
T 2pet_A 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV 86 (231)
T ss_dssp CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence 35678999999999999999885 8999998543211 0 11222 44456799999999
Q ss_pred CCCEEEEEEEEcCC-CceeeeEEEEEEeCCee--eeeCCCceEEEeeccE-EEEEEe-eecCCCCeEEEEEeCCEEecCC
Q psy14886 152 DDSGIYSCTATNVH-GMDESKGRLIVLHGPSY--YEQLPPKITIAAHRNL-QLRCSA-HTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 152 ~d~G~y~C~~~~~~-g~~~~~~~l~v~~~p~~--~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
+|+|.|+|.+.+.. +.....+.|.|..+|.. +...+....+..|+.+ .|.|.+ .+.|.+ .+.|++++..+...
T Consensus 87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p--~i~W~~~~~~~~~~ 164 (231)
T 2pet_A 87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP--KITWYRNGQRLEVP 164 (231)
T ss_dssp GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC--EEEEEETTEECCCC
T ss_pred ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC--EEEEEECCccCccc
Confidence 99999999999987 77777788888876543 2223334445577777 999999 777765 56799999988654
Q ss_pred CCCcccCCeee-----ec------CCeEEEecCCCCCCEEEEEEEEec
Q psy14886 227 DLNELETPNIN-----ID------GGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 227 ~~~~~~~~~~~-----~~------~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
..... ..... .. .+.|.+.....+|.|.|+|.|.|.
T Consensus 165 ~~~~~-~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 165 VEMNP-EGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp SSCCS-SEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred ccccc-ceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 31000 00000 00 145777755666799999999994
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=144.62 Aligned_cols=222 Identities=15% Similarity=0.112 Sum_probs=132.1
Q ss_pred CEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEe-CCeEEEEeecCCC-C--CCCCceEEEEEEeCCCCCeEEee
Q psy14886 253 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVH-KTSATIQWTDGAT-N--GRPITHYKIIARTNWNSTWFNVS 328 (505)
Q Consensus 253 ~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~-~~~v~l~w~~~~~-~--~~~i~~y~v~~~~~~~~~w~~~~ 328 (505)
.+.++..+.+..|.....- ....|.||.++.+.... .+++.|+|+++.+ . ++.+..|+++|+..+...|....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~---~~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~~~ 85 (380)
T 3lb6_C 9 GCLYTFLISTTFGCTSSSD---TEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTII 85 (380)
T ss_dssp -------------------------CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEEEE
T ss_pred hhhhhheeecccccccCCc---ccccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceEEE
Confidence 4455666666666432211 12257889999988766 6889999999876 2 35689999999998878898865
Q ss_pred eccccceeeeecCceeeEEeeeccCCceeEEEEEEEcC----CCcCCCCCCCCCcc--CCCCCCCCCCceeeeecccccc
Q psy14886 329 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNE----LGYGEPSSPSPQYN--TPADKPYQAPSRIGGGGGKIGD 402 (505)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~----~G~~~~s~~~~~~~--t~~~~p~~~P~~~~~~~~~~~~ 402 (505)
...+ . .... +..+..|+|||+|.|. .|.|.+|.++..+. +.++.|+.+|.++.....+.+.
T Consensus 86 ~~~~-----------~-~~~~-~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~ 152 (380)
T 3lb6_C 86 TKNL-----------H-YKDG-FDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQY 152 (380)
T ss_dssp ESSS-----------E-EEEE-CCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTE
T ss_pred eccE-----------E-EEEe-ecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcE
Confidence 4311 1 2223 5569999999999976 77777776542322 3557888999999998888899
Q ss_pred EEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEE--eeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceE
Q psy14886 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET--LKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480 (505)
Q Consensus 403 v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~ 480 (505)
+.++|+++ .+ .+..++|+|.|+..+...+.... ....+....+.+...++.+++.|.|+|.|.|..|.++.+..
T Consensus 153 l~csW~p~--~~-~~~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~~~- 228 (380)
T 3lb6_C 153 LLCSWKPG--IG-VLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYF- 228 (380)
T ss_dssp EEEEEECC---------CCEEEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCEEE-
T ss_pred EEEEEcCC--CC-CCCCccEEEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeeccccE-
Confidence 99999983 22 25678999999987644433221 11111222345555567889999999999999998875443
Q ss_pred EE------eecceEEEEEEE
Q psy14886 481 TI------WHDPLVIISYVC 494 (505)
Q Consensus 481 ~~------~t~p~~~~~~~~ 494 (505)
.+ ...||....+.+
T Consensus 229 ~~~~~~~v~p~pP~~l~v~~ 248 (380)
T 3lb6_C 229 TFQLQNIVKPLPPVYLTFTR 248 (380)
T ss_dssp EECGGGSCCCCCCEEEEEC-
T ss_pred EEcHHHcccCCCCceEEEEE
Confidence 23 234665555554
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=128.98 Aligned_cols=155 Identities=21% Similarity=0.296 Sum_probs=113.5
Q ss_pred ceEEeeCCCeEEEEeecCC--CCCCeEEEEE--CCEEe----------cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEA--APKPKFVWKK--DGNII----------GSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~--~p~~~i~W~~--~g~~~----------~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
..+...+|++|+|.|.... .+.+.|.|++ ++..+ ....++.+..+++|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~ 86 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence 4467889999999996533 4566999999 88776 34567788888999999999999999999999
Q ss_pred cCCCcee--eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecC
Q psy14886 163 NVHGMDE--SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240 (505)
Q Consensus 163 ~~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 240 (505)
|..|... ..+.|.|..+.. .+.+. ..+..+.|.|.+.+.+. +.+.|+++|..+ .. ..
T Consensus 87 n~~g~~~~~~~~~L~V~~~~~-----~P~i~-~~~~~v~L~C~~~~~p~--~~~~W~~~g~~l-~~------------~~ 145 (182)
T 1hnf_A 87 DTKGKNVLEKIFDLKIQERVS-----KPKIS-WTCINTTLTCEVMNGTD--PELNLYQDGKHL-KL------------SQ 145 (182)
T ss_dssp ETTSCEEEEEEEEEEEECCCC-----CCEEE-EETTTTEEEEECSSCSS--CEEEEEESSCEE-EE------------ES
T ss_pred eCCCceeEEEEEEEEEcCcCC-----CCEEE-EccCcEEEEeEccCCCC--CEEEEEECCEEC-CC------------CC
Confidence 9888754 346677765321 11111 12347999999988764 467899998877 21 12
Q ss_pred CeEEEecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 241 ~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
..+.+.. ..+|.|.|+|.|.|..|.......+
T Consensus 146 ~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 146 RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 2333333 4689999999999999987766554
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=142.98 Aligned_cols=163 Identities=18% Similarity=0.290 Sum_probs=108.0
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EECc---C--CCCCCCCCCcEEEEC----CeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--ELLN---S--ETLPLEDQDRYFIQD----NVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~l~---~--~~~~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|.+|++++|.|.+.+. +.+.+.|+|++ ..+. . ........+|+.... .+|.|.+++ .+|+|.|+|.
T Consensus 14 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~ 92 (256)
T 3ux9_B 14 GAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQ-SEDEADYYCQ 92 (256)
T ss_dssp ECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCC-GGGCEEEEEE
T ss_pred EcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCC-hhhCEEEEEE
Confidence 4689999999999876 67899999942 1111 0 000111235665532 379999999 9999999999
Q ss_pred EEcccCce---EeeEEEEEEecCC------------------CccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEE
Q psy14886 68 AKNQLKTR---YSSAQLRVLTLKP------------------SFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWK 124 (505)
Q Consensus 68 ~~~~~~~~---~~~~~l~v~~~~p------------------~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~ 124 (505)
+.+..+.. ...+.|.|...+. .+.+.. .....+.+|++++|.|.+.+.+ .+.+.|+
T Consensus 93 ~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~ 171 (256)
T 3ux9_B 93 VRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAMSWV 171 (256)
T ss_dssp EEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred EEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEEEEE
Confidence 99764422 2245677765221 111111 1234588999999999998876 6799999
Q ss_pred EC--CEEe------c-----------CCCcEEEeeCC-----CEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 125 KD--GNII------G-----------SGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 125 ~~--g~~~------~-----------~~~~~~~~~~~-----~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
++ +..+ . ...++.+..+. +|.|.+++.+|+|.|+|.|.+..
T Consensus 172 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 172 RQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 85 3221 1 11244444332 39999999999999999999864
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=140.36 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=116.2
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEec------------CCCcEEEee---CCCEEEcCCCCCCCEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIG------------SGGRRKIFE---NGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~~------------~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+.+|++++|.|.+. +.+.+.|+++ +..+. ...++.... +.+|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 57789999999999998 7889999983 22211 123444322 23599999999999999999
Q ss_pred EEcCCC--ceeeeEEEEEE----eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---c
Q psy14886 161 ATNVHG--MDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---L 231 (505)
Q Consensus 161 ~~~~~g--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~ 231 (505)
+.+..+ .....+.|.|. .+|.+... +.......|+.+.|.|.+.+.+++.+.+.|+++|..+....... .
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 165 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLF-PPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSK 165 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEE-CCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEec-CCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceE
Confidence 999887 34445677776 23433332 22222336899999999998766567889999999885421000 0
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEE
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 271 (505)
.........+.|.|.....+|.|.|+|.|.|..+.....+
T Consensus 166 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 166 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp CTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence 0001111124577887777889999999999887655544
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=143.60 Aligned_cols=175 Identities=20% Similarity=0.346 Sum_probs=115.3
Q ss_pred EEeeCCCeEEEEeecCCCCC-----CeEEEEECCEEe-------------cCCCcEEEee------CCCEEEcCCCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAPK-----PKFVWKKDGNII-------------GSGGRRKIFE------NGNLLISPVSRDDS 154 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~-----~~i~W~~~g~~~-------------~~~~~~~~~~------~~~l~i~~v~~~d~ 154 (505)
+.+.+|++++|.|.+.+.+. +.+.|++++... ....+..+.. +.+|.|.+++.+|+
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 45789999999999988753 689999976332 1123333332 45799999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCCe-eeeeCCCceEEEeeccEEEEEEe-eecCCCCeEEEEEe-CCEEecCCCCCcc
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTH-NGVRIGNMDLNEL 231 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~~w~~-~~~~~~~~~~~~~ 231 (505)
|.|+|.+.+. +.....+.|.|...+. ..........+..|+.+.|.|.+ .+.|.+ .+.|++ ++..+.....
T Consensus 85 G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~--~v~W~~~~~~~~~~~~~--- 158 (222)
T 4i0k_A 85 GSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA--EVFWKDGQGVPLTGNVT--- 158 (222)
T ss_dssp SCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC--EEEEECTTSCBCCSEEE---
T ss_pred EEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC--eEEEEcCCCccCCCCcc---
Confidence 9999999985 3444556666654321 11122233456789999999999 666654 567988 4433322100
Q ss_pred cCCeeeecCC---eEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC
Q psy14886 232 ETPNINIDGG---LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280 (505)
Q Consensus 232 ~~~~~~~~~~---~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~ 280 (505)
......... .|.+..+..+|.|.|+|.|.|..|.....+.|.|..+|.
T Consensus 159 -~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 209 (222)
T 4i0k_A 159 -TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL 209 (222)
T ss_dssp -EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred -eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence 001111122 367888889999999999999999999999999987764
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=144.65 Aligned_cols=199 Identities=18% Similarity=0.199 Sum_probs=109.3
Q ss_pred CCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEe-----
Q psy14886 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNII----- 130 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~----- 130 (505)
+.|.+.|.|.+.+..|.......+.|.. + +..+.+.+|++++|.|.+.+ +.+.+.|++ .+...
T Consensus 5 ~~~~~~y~~~~~~~~g~~~~~~~~~v~~-~--------p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~ 74 (270)
T 3qib_D 5 RADLIAYLKQATKGGGGSGGGGGMKVIQ-T--------PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN 74 (270)
T ss_dssp -----------------------CCCEE-E--------CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred hhhHHHHHHHHhccCCccccccceeEEe-C--------CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence 7899999999988766544443333332 1 24467899999999999865 667999998 22110
Q ss_pred -------cCC---C-cEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCC----ceeeeEEEEEEe------CCeeeee
Q psy14886 131 -------GSG---G-RRKIFE----NGNLLISPVSRDDSGIYSCTATNVHG----MDESKGRLIVLH------GPSYYEQ 185 (505)
Q Consensus 131 -------~~~---~-~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g----~~~~~~~l~v~~------~p~~~~~ 185 (505)
... . ++.... +.+|.|.+++.+|+|.|.|.+.+... .......|.|.. +|.+...
T Consensus 75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~ 154 (270)
T 3qib_D 75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF 154 (270)
T ss_dssp EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence 000 0 444332 23599999999999999999996432 222335677765 3333332
Q ss_pred CCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc--------cCCeeeecCCeEEEecCCCCC-CEEE
Q psy14886 186 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--------ETPNINIDGGLLEITNASFAD-AGEY 256 (505)
Q Consensus 186 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~~-~g~y 256 (505)
.+....+..|+.++|.|.+.+..++.+.+.|+++|..+........ .........+.|.|.....+| .|.|
T Consensus 155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~Y 234 (270)
T 3qib_D 155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF 234 (270)
T ss_dssp ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEE
T ss_pred CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeE
Confidence 2333334458999999999985444568889999998865311000 000111112356676666666 9999
Q ss_pred EEEEEecCCc
Q psy14886 257 ECVVKSTVGK 266 (505)
Q Consensus 257 ~C~~~n~~g~ 266 (505)
+|.|.|....
T Consensus 235 tC~v~~~~l~ 244 (270)
T 3qib_D 235 RCQVQFYGLS 244 (270)
T ss_dssp EEEEEECCBC
T ss_pred EEEEEecCCC
Confidence 9999986554
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=135.42 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=107.1
Q ss_pred CCCCCceEEEEEEeccCCC--eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDV--TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~--~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|++++|.|.+ +.|.+ .|+|++.+..+. ..+.......|.|.+++ .+|+|.|.|.+.+..+.....
T Consensus 19 v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~--------~~~~~~~~~~L~I~~v~-~~d~G~Y~C~a~n~~~~~~~~ 88 (210)
T 1gsm_A 19 VALGASRQLTCRL-ACADRGASVQWRGLDTSLG--------AVQSDTGRSVLTVRNAS-LSAAGTRVCVGSCGGRTFQHT 88 (210)
T ss_dssp EETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC--------CEEEESSEEEEEECSCC-GGGCEEEEEEEEETTEEEEEE
T ss_pred EeCCCCEEEEEEC-CCCCCCcceEEeecccccC--------cEEecCCccEEEECccC-cccCceEEEEEEeCCCceEEE
Confidence 4579999999999 87776 999999554331 11112234689999999 999999999999988777778
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC----CeEEEEECCEEecCCCcE--EE------e---eCC
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK----PKFVWKKDGNIIGSGGRR--KI------F---ENG 142 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~----~~i~W~~~g~~~~~~~~~--~~------~---~~~ 142 (505)
+.|.|+. +|....... . ....|+.+ |.|.+.+. |. ++|.|+|+++.+...... .. . ...
T Consensus 89 ~~ltV~~-~P~~~~i~~-~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 163 (210)
T 1gsm_A 89 VQLLVYA-FPNQLTVSP-A--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDV 163 (210)
T ss_dssp EEEEEEB-CCSEEEEES-S--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCC
T ss_pred EEEEEEe-cCCCcEEcc-c--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcce
Confidence 9999996 554332211 1 36678888 99999875 63 489999999998543210 11 0 111
Q ss_pred C------EEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 143 N------LLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 143 ~------l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
. +.+.....+|.+.|+|.|.+.....
T Consensus 164 ~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~ 195 (210)
T 1gsm_A 164 LFRVTERWRLPPLGTPVPPALYCQATMRLPGL 195 (210)
T ss_dssp CEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred EEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence 2 3344666677789999998765433
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-17 Score=141.49 Aligned_cols=162 Identities=15% Similarity=0.241 Sum_probs=107.2
Q ss_pred CCCCCceEEEEEEeccC-----CCeEEEEECC--EE---CcCC--CCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVP-----DVTYSWFRNG--EL---LNSE--TLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----~~~~~W~~~~--~~---l~~~--~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y 64 (505)
|.+|++++|.|.+.+.| .+.+.|+|++ .. +... ........|+.+. + .+|.|.+++ .+|+|.|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y 91 (247)
T 1svz_A 13 VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE-AEDLGIY 91 (247)
T ss_dssp ECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEE
T ss_pred ecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCC-HHHCEEE
Confidence 46899999999998877 6899999942 11 1100 0000123566553 2 379999999 9999999
Q ss_pred EEEEEcccCceE-eeEEEEEEecC-----------CCccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEECC--E
Q psy14886 65 QCRAKNQLKTRY-SSAQLRVLTLK-----------PSFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--N 128 (505)
Q Consensus 65 ~C~~~~~~~~~~-~~~~l~v~~~~-----------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~ 128 (505)
+|.+.+..+... ..+.|.|...+ |.+.+... ....+.+|++++|.|.+.+.+ .+.+.|++++ .
T Consensus 92 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~ 170 (247)
T 1svz_A 92 YCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQS-GPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGG 170 (247)
T ss_dssp EEEECSSSSCEECCCEEEEEC---------------CCEEEEC-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTC
T ss_pred EEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCC-CceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCC
Confidence 999998754422 24567776421 22222111 224589999999999998874 5699999952 2
Q ss_pred Ee------c-----------CCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 129 II------G-----------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 129 ~~------~-----------~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+ . ...++.+..+ .+|.|.+++.+|+|.|.|.|.|.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 171 DLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp CEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 11 0 0234444321 36999999999999999999985
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-17 Score=141.40 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=110.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCe-----EEEEECCEEecC--------CCcEEEe-------------eCCCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPK-----FVWKKDGNIIGS--------GGRRKIF-------------ENGNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~-----i~W~~~g~~~~~--------~~~~~~~-------------~~~~l~i~~v~ 150 (505)
....+.+|++++|.|.+.+.|.+. +.|++++..... +...... .+.+|.|.+++
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~ 90 (248)
T 3pv7_A 11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQ 90 (248)
T ss_dssp SEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCC
T ss_pred CCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCC
Confidence 446788999999999998776554 999995322110 0000000 12349999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeee-cCCCCeEEEEEeCCEEecCCCC-
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDL- 228 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~w~~~~~~~~~~~~- 228 (505)
.+|+|.|+|.+.+..+.....+.|.|..+|.+..... .....|..+.|.|.+.+ .|.+ +.+.|++++..+.....
T Consensus 91 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~p-i~v~W~k~g~~l~~~~~~ 167 (248)
T 3pv7_A 91 LEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEA-INITWEKQTQKFPHPIEI 167 (248)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSC-CEEEEEEECSSSCSCEEE
T ss_pred HHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCC-eEEEEEECCccCCCcccc
Confidence 9999999999999888777778899987776554332 33456777889999998 4543 47789998853321100
Q ss_pred --------CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc--EEEEEEEEEc
Q psy14886 229 --------NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--ISTKTTVIVE 276 (505)
Q Consensus 229 --------~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~--~~~~~~l~v~ 276 (505)
............+.|.+.....++.|.|+|.|.|..+. ....+.|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~ 225 (248)
T 3pv7_A 168 SEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA 225 (248)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred ccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence 00000011112246777778888999999999998886 5556666663
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-17 Score=140.57 Aligned_cols=162 Identities=14% Similarity=0.194 Sum_probs=107.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EEC---cCC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELL---NSE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l---~~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|++ ..+ ... .......+|+.+. ..+|.|.+++ .+|+|.|.|.+.
T Consensus 13 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 91 (242)
T 2znx_A 13 VTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE-TEDFGMYFCQQS 91 (242)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred EcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCC-hHHCEEEEEeEe
Confidence 468999999999998888999999953 111 000 0000123566653 2379999999 999999999999
Q ss_pred cccCceE-eeEEEEEEecCC-----------CccCCCCCceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEec--
Q psy14886 70 NQLKTRY-SSAQLRVLTLKP-----------SFKKRPLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-- 131 (505)
Q Consensus 70 ~~~~~~~-~~~~l~v~~~~p-----------~~~~~~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~~-- 131 (505)
+..+... ..+.|.|...+. .+.+.. +....+.+|++++|.|.+.+.+ .+.+.|+++ +..+.
T Consensus 92 n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l 170 (242)
T 2znx_A 92 NSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQE-SGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYM 170 (242)
T ss_dssp SSSSCEECCCEEEEEC---------------CCEEEE-ECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEE
T ss_pred cCCceEECCCEEEEEcCCCCCCcccccccccceeeec-CCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEE
Confidence 8754322 245677764221 111111 1223589999999999998875 478999984 32210
Q ss_pred --------------CCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 132 --------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 132 --------------~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
...++.+..+ .+|.|.+++.+|+|.|+|.|.+.
T Consensus 171 ~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 171 GYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred EEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 1234444321 26999999999999999999874
|
| >2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=126.16 Aligned_cols=117 Identities=23% Similarity=0.321 Sum_probs=94.8
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.|++|... .+.|.+..|+.+|.++.+...+.++|.|.|++++..+.+|.|++|+|+|+..+...+....+.. .....
T Consensus 1 G~g~~S~~~-~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~ 78 (134)
T 2edx_A 1 GSSGSSGTI-EARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDG-ISREH 78 (134)
T ss_dssp CCCCCCCCC-CCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECC-CBTTC
T ss_pred CCCCCcCCE-EEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEe-eCCCc
Confidence 667777765 7888888998899999999888999999999965578899999999999988744332222221 11234
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 79 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 117 (134)
T 2edx_A 79 SSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117 (134)
T ss_dssp SEEEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECCC
T ss_pred cEEEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecCC
Confidence 678899999999999999999999999999999988863
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=140.94 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=116.0
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC--CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~ 175 (505)
.+.+|++++|.|.+.+ +...+.|+|+|..+... ........+.|.|.+++.+|+|.|+|.+.+..+.. +..+.|.
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~ 95 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 95 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence 5889999999999875 35689999999876411 00001123469999999999999999998764432 3446777
Q ss_pred EEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCC
Q psy14886 176 VLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252 (505)
Q Consensus 176 v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 252 (505)
|.. +|.+... + ...+..|+.++|.|.+.+.+ ..+.|+++|..+... .........|.|..++.+|
T Consensus 96 V~~~~~~P~i~~~-p-~~~v~~G~~vtL~C~~~~~~---~~~~w~k~g~~~~~~-------~~~~~~~~~l~I~~v~~~d 163 (242)
T 1p6f_A 96 VTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDTAT---SMFLLLKEGRSSHVQ-------RGYGKVQAEFPLGPVTTAH 163 (242)
T ss_dssp EECCSCCCEEEEE-S-CSEEETTCEEEEEEECTTSC---SEEEEEECSSSCEEE-------EEECSSEEEEEEEECCGGG
T ss_pred eecccCCCceEcc-C-CCccCCCCcEEEEEecCCCC---CEEEEEECCCccCcc-------ccCCCceEEEEeCCCcccc
Confidence 764 3333322 2 34678999999999987542 377899988654320 1112234689999999999
Q ss_pred CEEEEEEEEecC---CcEEEEEEEEEcCCCCCC
Q psy14886 253 AGEYECVVKSTV---GKISTKTTVIVEGPPGLP 282 (505)
Q Consensus 253 ~g~y~C~~~n~~---g~~~~~~~l~v~~~p~~p 282 (505)
.|.|+|.+.|.. ...+..+.|.|..++..|
T Consensus 164 ~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 164 RGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp CEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred CEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 999999998864 234566788887765544
|
| >2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=120.66 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCC-CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~-i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
++.|. +|.++.+...+.+ +.|+|++ +...+|. |++|+|+|+..+...|.............+.+.|.+|.|++.|
T Consensus 4 ~~~P~-~P~~~~~~~~~~~-v~l~W~~--P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 79 (105)
T 2haz_A 4 MDTPS-SPSIDQVEPYSST-AQVQFDE--PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY 79 (105)
T ss_dssp CCCCC-CCEEEEEEECSSC-EEEEEEC--CSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEE
T ss_pred CCCCc-CCCCCEEEEcCCc-EEEEEcC--CcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEE
Confidence 34554 4899998877777 9999998 3566666 9999999999987778644322212223467899999999999
Q ss_pred EEEEEEecCCCCCCCCceEEEeecc
Q psy14886 462 EVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|+|+|+|.+|.|++|+.+.+.|.|
T Consensus 80 ~~rV~A~n~~G~g~~S~~~~~~T~p 104 (105)
T 2haz_A 80 AVRLAALNGKGLGEISAASEFKTQP 104 (105)
T ss_dssp EEEEEEEETTEECCCCCCEEEECCC
T ss_pred EEEEEEEcCCccCCCcCCEeeEEec
Confidence 9999999999999999999999987
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-17 Score=138.35 Aligned_cols=166 Identities=19% Similarity=0.301 Sum_probs=110.1
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EE---CcC--C-----CCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--EL---LNS--E-----TLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~---l~~--~-----~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|++ .. +.. . .......+|+.+. ..+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 90 (223)
T 1dee_B 12 VQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR-AED 90 (223)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC-HHH
Confidence 46899999999998765 4789999943 11 100 0 0001124677653 2489999999 999
Q ss_pred CeEEEEEEEcccC----c-e-EeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEE-CCE
Q psy14886 61 PAMYQCRAKNQLK----T-R-YSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKK-DGN 128 (505)
Q Consensus 61 ~G~Y~C~~~~~~~----~-~-~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~-~g~ 128 (505)
+|.|.|.+.+..+ . . ...+.|.|... +|.+.... +...+.+|+.++|.|.+.+. |.+ .+.|++ +|.
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (223)
T 1dee_B 91 TAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV--SCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNS 168 (223)
T ss_dssp CEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE--CTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred CEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec--CCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCC
Confidence 9999999988643 1 1 12356777631 23322111 11124689999999999887 766 999999 888
Q ss_pred EecC---------CCcEEEeeCCCEEEcCCCC--CCCEEEEEEEEcCCCceeee
Q psy14886 129 IIGS---------GGRRKIFENGNLLISPVSR--DDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 129 ~~~~---------~~~~~~~~~~~l~i~~v~~--~d~G~y~C~~~~~~g~~~~~ 171 (505)
.+.. +..+. ....|.|..... +|.|.|+|.|.|..+.....
T Consensus 169 ~l~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~ 220 (223)
T 1dee_B 169 DISSTRGFPSVLRGGKYA--ATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD 220 (223)
T ss_dssp BCSCEEECCCEEETTEEE--EEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred ccceeEECCccccCCeEE--EEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence 7643 01111 123477877766 78999999999988876543
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=142.11 Aligned_cols=162 Identities=13% Similarity=0.212 Sum_probs=105.9
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEECCEECcCCCC--C-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRNGELLNSETL--P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~~~~l~~~~~--~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|++++|.|.+.+.+ ...|.|+|++..+..... . ....+++. ..++|.|.+++ .+|+|.|+|.|.|..+
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~-~~D~G~Y~C~a~~~~~ 92 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR-SVSELPIMHQD-WLNGKEFKCRVNSAAF 92 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE-EEEEEECCHHH-HHTTCCEEEEEECTTC
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE-EEEEEEEehhH-cCCCCEEEEEEEccCC
Confidence 36899999999998874 359999999987652210 0 00122332 23579999999 9999999999998776
Q ss_pred ceEeeEEE----EEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCC--cEEEeeCCC--
Q psy14886 74 TRYSSAQL----RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGG--RRKIFENGN-- 143 (505)
Q Consensus 74 ~~~~~~~l----~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~--~~~~~~~~~-- 143 (505)
.......+ .+. .+|.+.+.+.... ..+|+.+.|.|.+.|. |. +.+.|+++|..+.... ......+++
T Consensus 93 ~~~~~~~v~~~~~~~-~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~ 169 (207)
T 2vol_A 93 PAPIEKTISKTKGRP-KAPQVYTLPPPKE--QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYF 169 (207)
T ss_dssp SSCEEEEECCCCCCC-BCCEEEEECCCTG--GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEE
T ss_pred CCceEEEeccCCCCC-cCCeEEEeCCCHH--HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEE
Confidence 53222222 222 3455443332221 2358999999999884 54 4999999999875321 112233444
Q ss_pred ----EEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 144 ----LLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 144 ----l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|.|.....+|.|.|+|.|.|....
T Consensus 170 ~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 170 VYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 444444556899999999987543
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=135.45 Aligned_cols=156 Identities=19% Similarity=0.312 Sum_probs=106.9
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe--
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH-- 178 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~-- 178 (505)
+.+|++++|.|.+ |.+.+.|+|+|..+... ...+++|.|.+++.+|+|.|+|.+.+.. ...+.+.+..
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~v~~~~ 84 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL----TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVYYRMGS 84 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE----ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEEEEC--
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC----CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEEEEEec
Confidence 4689999999998 67899999999887532 1235679999999999999999975432 2224444430
Q ss_pred ----------------------------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc
Q psy14886 179 ----------------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230 (505)
Q Consensus 179 ----------------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 230 (505)
.+..+.. .+......|+.+.|.|. +.|.+ .+.|++++..+.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~v~~~G~~v~L~C~--g~p~p--~i~W~k~~~~l~~~~~-- 157 (204)
T 1sy6_A 85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ-TPYKVSISGTTVILTCP--QYPGS--EILWQHNDKNIGGDED-- 157 (204)
T ss_dssp ----------------------------------C-CCCEEEEETTEEEEECS--CCCSS--CEEEEETTEEESCCTT--
T ss_pred cccccccccccccccccccccccccccccccceec-CCceeeecCCcEEEEcC--CCCCC--ceEEEECCEECCCccC--
Confidence 0111111 11222238999999998 55555 4679999988754211
Q ss_pred ccCCeeeecCCeEEEecC-CCCCCEEEEEEEEecCCcE-EEEEEEEE
Q psy14886 231 LETPNINIDGGLLEITNA-SFADAGEYECVVKSTVGKI-STKTTVIV 275 (505)
Q Consensus 231 ~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~n~~g~~-~~~~~l~v 275 (505)
.......+..|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 158 --~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 158 --DKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp --CTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred --CceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 0122224789999999 9999999999999999963 44555544
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=141.75 Aligned_cols=168 Identities=15% Similarity=0.244 Sum_probs=110.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EE---CcC-CC--------CCCCCCCcEEEE----C--CeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--EL---LNS-ET--------LPLEDQDRYFIQ----D--NVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~---l~~-~~--------~~~~~~~~~~~~----~--~~L~i~~~~~~ 58 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ .. +.. .. ......+|+.+. . .+|.|.+++ .
T Consensus 12 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~ 90 (220)
T 1pz5_B 12 VQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLR-A 90 (220)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCC-G
T ss_pred EcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCC-H
Confidence 46899999999998765 6899999953 11 100 00 000013566653 1 289999999 9
Q ss_pred CCCeEEEEEEEcccCce-E--eeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEe
Q psy14886 59 RDPAMYQCRAKNQLKTR-Y--SSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNII 130 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~~~-~--~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~ 130 (505)
+|+|.|+|.+.+..+.. . ..+.|.|... +|.+...+ +...+.+|+.++|.|.+.|. |.+ .+.|++++...
T Consensus 91 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~ 168 (220)
T 1pz5_B 91 EDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLV--PGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSS 168 (220)
T ss_dssp GGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC--CCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred HHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcc--cccccCCCCcEEEEEEEEEEeCCCeEEEEecCCccc
Confidence 99999999999865332 1 3466777631 23332222 11235689999999999887 888 99999987631
Q ss_pred c--CCCc----EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 131 G--SGGR----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 131 ~--~~~~----~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
. .... ......+.|.|.++..+| |.|+|.|.|..|.....+
T Consensus 169 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 169 GVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK 215 (220)
T ss_dssp TEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred ceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence 0 0000 011123468888888766 999999999988765543
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=139.05 Aligned_cols=175 Identities=20% Similarity=0.331 Sum_probs=118.3
Q ss_pred ceEEeeCCCeEEEEeecC---CCCCCeEEEEECCEEecC------------------CCcEEEe-----eCCCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPE---AAPKPKFVWKKDGNIIGS------------------GGRRKIF-----ENGNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~---~~p~~~i~W~~~g~~~~~------------------~~~~~~~-----~~~~l~i~~v~ 150 (505)
..+.+.+|+++.|.|.+. +.+.+.+.|++++..... ..+..+. .+.+|.|.+++
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 92 (268)
T 3mj6_A 13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQ 92 (268)
T ss_dssp CEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCC
T ss_pred CceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCC
Confidence 457789999999999987 667779999995532211 1333332 12679999999
Q ss_pred CCCCEEEEEEEEcCCCceeee--EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeC-CEEecCC
Q psy14886 151 RDDSGIYSCTATNVHGMDESK--GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHN-GVRIGNM 226 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~-~~~~~~~ 226 (505)
.+|+|.|+|.+.+..+..... +.|.|. + ..+....+..|+.+.|.|.+.+. ..|...+.|+++ +......
T Consensus 93 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~ 166 (268)
T 3mj6_A 93 KADEGIYTCEIRLKNESMVMKKPVELWVL--P----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEE 166 (268)
T ss_dssp GGGCEEEEEEEEETTCCCEEEEEEEEEEE--C----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCE
T ss_pred HhHCEEEEEEEEecCCcceEEEEEEEEEe--c----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcce
Confidence 999999999999876554333 445543 2 12346678899999999999432 223446779883 2111000
Q ss_pred C---------------CCcccC-----CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 227 D---------------LNELET-----PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 227 ~---------------~~~~~~-----~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
. ...+.. .........|.|..+..+|.|.|+|.|.|..|.....+.|.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 237 (268)
T 3mj6_A 167 TVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237 (268)
T ss_dssp EEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc
Confidence 0 000000 00112356899999999999999999999999888888888843
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=143.74 Aligned_cols=176 Identities=18% Similarity=0.268 Sum_probs=112.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc---C-C------CCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN---S-E------TLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~---~-~------~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. . . .......+|+.+. ..+|.|.+++ .+|
T Consensus 34 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 112 (291)
T 2gki_A 34 VKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT-SED 112 (291)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC-GGG
T ss_pred ecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC-HHH
Confidence 46899999999998766 5789999953 1110 0 0 0000012455442 2479999999 999
Q ss_pred CeEEEEEEEccc-Cc--eE--eeEEEEEEec---------------CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-
Q psy14886 61 PAMYQCRAKNQL-KT--RY--SSAQLRVLTL---------------KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP- 119 (505)
Q Consensus 61 ~G~Y~C~~~~~~-~~--~~--~~~~l~v~~~---------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~- 119 (505)
+|.|.|.+.+.. +. .. ..+.|.|... ++.+... +....+.+|++++|.|.+.+.+.+
T Consensus 113 sG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~ 190 (291)
T 2gki_A 113 SAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQS--PSSLAVSAGEKVTMSCKSSQSLFNS 190 (291)
T ss_dssp CEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECS--CSEEEEETTSCEEEEEEESSCCEET
T ss_pred CEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcC--CCEEEEcCCCcEEEEEEcCCccccc
Confidence 999999999864 21 11 2346666641 1112222 345678999999999999888765
Q ss_pred -----eEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEE
Q psy14886 120 -----KFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIV 176 (505)
Q Consensus 120 -----~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v 176 (505)
.+.|+++ |.. +. ...++..... .+|.|.+++.+|+|.|+|.+.+.....-.. ..|.|
T Consensus 191 ~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v 270 (291)
T 2gki_A 191 RTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEI 270 (291)
T ss_dssp TTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEE
Confidence 8999995 221 11 0234443322 259999999999999999999854322222 34555
Q ss_pred EeC
Q psy14886 177 LHG 179 (505)
Q Consensus 177 ~~~ 179 (505)
...
T Consensus 271 ~~~ 273 (291)
T 2gki_A 271 KHH 273 (291)
T ss_dssp ECC
T ss_pred Eee
Confidence 443
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.70 E-value=9.4e-18 Score=143.26 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=107.4
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc----CCC-----CCCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN----SET-----LPLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~----~~~-----~~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. ... ......+|+.+.. .+|.|.+++ .+|+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~D~ 90 (210)
T 3d9a_H 12 VKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT-TEDT 90 (210)
T ss_dssp ECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGGC
T ss_pred ecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC-cccC
Confidence 46899999999998865 4899999952 2111 000 0001235666531 389999999 9999
Q ss_pred eEEEEEEEcccCceEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecC--CC
Q psy14886 62 AMYQCRAKNQLKTRYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS--GG 134 (505)
Q Consensus 62 G~Y~C~~~~~~~~~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~--~~ 134 (505)
|.|+|.+.+.. .....+.|.|... +|.+...+. ...+.+|+.++|.|.+.+. |.+ .+.|++++..+.. ..
T Consensus 91 G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~ 167 (210)
T 3d9a_H 91 ATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAP--GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFP 167 (210)
T ss_dssp EEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECC--TTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC
T ss_pred EEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecC--CcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcC
Confidence 99999998753 1122356666531 233322221 1225689999999999887 877 9999998875321 11
Q ss_pred cEE----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 135 RRK----IFENGNLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 135 ~~~----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
... ......|.|.++..+| |.|+|.|.|..|...
T Consensus 168 ~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 168 AVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp CEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred CccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 111 1112358888888767 999999999877654
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=137.46 Aligned_cols=172 Identities=16% Similarity=0.228 Sum_probs=111.4
Q ss_pred eEEeeCCCeEEEEeecCCC-CCCeEEEEECC---EE------------ec---CCCcEEEee---CCCEEEcCCCCCCCE
Q psy14886 98 ETYAGEGGNVTIFCNPEAA-PKPKFVWKKDG---NI------------IG---SGGRRKIFE---NGNLLISPVSRDDSG 155 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g---~~------------~~---~~~~~~~~~---~~~l~i~~v~~~d~G 155 (505)
.+.+.+|++++|.|.+.+. |.+.+.|++.. .. .. ...++.+.. +.+|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 5678999999999999998 88899999821 10 00 012443322 235999999999999
Q ss_pred EEEEEEEcCCC-----ceeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 156 IYSCTATNVHG-----MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 156 ~y~C~~~~~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
.|.|.+.+..| .....+.|.|.. +|.+... +.......|+.+.|.|.+.+..++.+.+.|+++|..+...
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~-~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~ 167 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVF-PPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQG 167 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEE-CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC---
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEee-CCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCc
Confidence 99999998876 223346777764 2333222 2223334567899999999854444578899999888642
Q ss_pred CCCc--ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE
Q psy14886 227 DLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270 (505)
Q Consensus 227 ~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 270 (505)
.... ..........+.|.|.....+|.|.|+|.|.|..+.....
T Consensus 168 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 213 (218)
T 3s96_B 168 VDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS 213 (218)
T ss_dssp -----------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred eecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence 1100 0000111112347777777778999999999988765544
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-18 Score=146.59 Aligned_cols=173 Identities=14% Similarity=0.226 Sum_probs=108.3
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc------C-CC---CCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN------S-ET---LPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~------~-~~---~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|++ ..+. . .. ......+|+.+. ..+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 90 (227)
T 1mju_H 12 VKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT-SDD 90 (227)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred EcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC-ccc
Confidence 46899999999998866 6889999953 2110 0 00 000013577653 2489999999 999
Q ss_pred CeEEEEEEEcccCceE-eeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecC--
Q psy14886 61 PAMYQCRAKNQLKTRY-SSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS-- 132 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~-~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~-- 132 (505)
+|.|.|.+.+...... ..+.|.|... +|.+.... +...+.+|+.++|.|.+.|. |.+ .+.|++++..+..
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~ 168 (227)
T 1mju_H 91 SAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA--PVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT 168 (227)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC--CCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred CEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec--CCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEE
Confidence 9999999987532211 2356777641 23332211 11235689999999999885 766 9999998875421
Q ss_pred CCcE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 133 GGRR----KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 133 ~~~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
.... .......|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus 169 ~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~ 216 (227)
T 1mju_H 169 FPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR 216 (227)
T ss_dssp CCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence 1111 11123358898888878 99999999976665555555443
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=132.59 Aligned_cols=165 Identities=14% Similarity=0.225 Sum_probs=110.0
Q ss_pred EEeeCCCeEEEEeecCC----CCCCeEEEEECCEEecC------------CCcEEE--eeCCCEEEcCCCCCCCEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEA----APKPKFVWKKDGNIIGS------------GGRRKI--FENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~----~p~~~i~W~~~g~~~~~------------~~~~~~--~~~~~l~i~~v~~~d~G~y~C~ 160 (505)
+.+.+|+++.|.|.+.+ .|.+.+.|++++..+.. ..+..+ ..+.+|.|.+++.+|+|.|+|.
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence 56889999999999864 35679999999987620 122222 1235799999999999999999
Q ss_pred EEcCCCcee-----eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEee-ecCCCCeEEEEEeCCEEecCCCCCcccCC
Q psy14886 161 ATNVHGMDE-----SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAYIWTHNGVRIGNMDLNELETP 234 (505)
Q Consensus 161 ~~~~~g~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 234 (505)
+.+..|... ..+.|.|...+...... ......|+.+.|.|.+. +.|.| .+.|+++|..+.... .
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~--~~~~~~g~~~~l~C~~~~g~P~p--~i~W~k~g~~l~~~~------~ 153 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKADFPTPSIS--DFEIPTSNIRRIICSTSGGFPEP--HLSWLENGEELNAIN------T 153 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECCCCCCEEE--EEECSSTTEEEEEEEEEEESSCE--EEEEEESSCEECCSE------E
T ss_pred EEcCCCCccccccccEEEEEEcCCCCCCceE--eccCCCCCeEEEEEecCCccCCC--EEEEEECCEECcccc------c
Confidence 999776543 34667765542211000 01113477899999995 76665 677999988876431 1
Q ss_pred eeeec-C-CeEE---EecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 235 NINID-G-GLLE---ITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 235 ~~~~~-~-~~l~---i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
..... . ..+. +..+...|.|.|+|.|.|..|..+..+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 154 TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 11111 1 2222 23344578999999999999988776654
|
| >2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=121.89 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=89.3
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC--cEEEEeeecCce
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--FQSETLKEYGNV 445 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~ 445 (505)
|.|++|... .+.|.+..|+.+|.++++...+.++|.|.|+++. . +.|++|+|+|+..+... +.......
T Consensus 1 G~g~~S~~~-~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~--~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~---- 71 (119)
T 2ee2_A 1 GSSGSSGVA-VINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL--E--KIVESYQIRYWAAHDKEEAANRVQVTS---- 71 (119)
T ss_dssp CCCCCSSCC-CCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCS--C--TTCCEEEEEEEESSSCGGGCEEEEEET----
T ss_pred CCCCCCCCE-EEECCCcCCCCCCCcEEEEEccCCEEEEEecCCC--C--CccceEEEEEEECCCcccCcEEEEcCC----
Confidence 567777754 7888889999899999999888999999999843 3 88999999999876332 33222222
Q ss_pred eeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 446 GIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 446 ~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
....+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 72 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 112 (119)
T 2ee2_A 72 QEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112 (119)
T ss_dssp TCSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECCC
T ss_pred CEeEEEECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence 23578899999999999999999999999999999998863
|
| >1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=121.28 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=83.1
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEcCCcccee
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYT 459 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~ 459 (505)
+..|+.+|.++.+...+.++|.|.|++++....++.|++|+|+|+..+.. .|....+.. ....+.|.+|.|++
T Consensus 5 ~~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t 80 (114)
T 1x4y_A 5 SSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEG----DRYWHSISHLQPET 80 (114)
T ss_dssp CCSCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEET----TCCEEEECSCCTTC
T ss_pred ccCCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCC----cEeEEEcCCCCCCC
Confidence 56788899999999999999999999965567899999999999987643 343222222 23568999999999
Q ss_pred eEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 460 EYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 81 ~Y~~~V~A~n~~G~g~~S~~v~~~T~~ 107 (114)
T 1x4y_A 81 SYDIKMQCFNEGGESEFSNVMICETKA 107 (114)
T ss_dssp EEEEEEEEECTTCCCCCCCCEEEECCC
T ss_pred EEEEEEEEEcCCccCCCcCCEEEEeCC
Confidence 999999999999999999999998864
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=134.90 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=110.7
Q ss_pred ceEEeeCCCeEEEEeec-CCCC-CCeEEEEECC--EEe------------cCCCcEEEeeCC---CEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNP-EAAP-KPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~-~~~p-~~~i~W~~~g--~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~G~y 157 (505)
....+.+|++++|.|.+ .+.+ .+.+.|++++ ..+ ....++.....+ +|.|.+++.+|+|.|
T Consensus 8 ~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (216)
T 2xzc_L 8 PSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (216)
T ss_dssp SEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence 45779999999999995 4443 5799999843 211 012344443333 699999999999999
Q ss_pred EEEEEcCCC--ceeeeEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC---
Q psy14886 158 SCTATNVHG--MDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN--- 229 (505)
Q Consensus 158 ~C~~~~~~g--~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~--- 229 (505)
.|.+.+..+ .......|.|.. +|.+....+. .....|+.+.|.|.+.+.+++.+.+.|+++|..+......
T Consensus 88 ~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~ 166 (216)
T 2xzc_L 88 YCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT 166 (216)
T ss_dssp EEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred EEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC-hhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence 999999876 122235666643 2333322222 1223578999999999865444578899999887653000
Q ss_pred -cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 230 -ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 230 -~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
...........+.|.|.....+|.|.|+|.|.|.....
T Consensus 167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 00000111112368888888899999999999977543
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-17 Score=138.01 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=110.0
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EE---CcCCC-------CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--EL---LNSET-------LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~---l~~~~-------~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|.+ .. +.... ......+|+.+.. .+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 90 (220)
T 2fbj_H 12 VQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR-SED 90 (220)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC-GGG
T ss_pred ecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC-hhh
Confidence 46899999999998765 5789999953 11 11000 0011246776642 389999999 999
Q ss_pred CeEEEEEEEcccCc---eEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC--CeEEEEECCEEec
Q psy14886 61 PAMYQCRAKNQLKT---RYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK--PKFVWKKDGNIIG 131 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~---~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~--~~i~W~~~g~~~~ 131 (505)
+|.|.|.+.+..+. ....+.|.|... +|.+...+ ...+.+|+.++|.|.+.+. |. +.+.|++++..+.
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~---~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~ 167 (220)
T 2fbj_H 91 TALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT---LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDIT 167 (220)
T ss_dssp CEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC---CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCE
T ss_pred CEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee---cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecc
Confidence 99999999876442 112456777642 23332222 1125689999999999886 66 6999999887542
Q ss_pred C-CCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 132 S-GGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 132 ~-~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
. ........++ .|.|.++...|.|.|+|.|.|..+...
T Consensus 168 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 168 TVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred eEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 1 0011111122 388888888999999999999887654
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=135.51 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=112.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC---EE--e---------cCCCcEEEeeC---CCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG---NI--I---------GSGGRRKIFEN---GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g---~~--~---------~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.+.+.|.+.+.|++.+ .. + ....++..... .+|.|.+++.+|+|.|+|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 88 (213)
T 3r06_A 9 SSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYC 88 (213)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred CEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEE
Confidence 4567899999999999999988899999832 11 0 01234444322 269999999999999999
Q ss_pred EEEcCCCceee-eEEEEEE---eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC-C---Ccc
Q psy14886 160 TATNVHGMDES-KGRLIVL---HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-L---NEL 231 (505)
Q Consensus 160 ~~~~~~g~~~~-~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~-~---~~~ 231 (505)
.+.+..+.... ...|.|. .+|.+... +.......|+.+.|.|.+.+.+++.+.+.|+++|..+.... . ...
T Consensus 89 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~ 167 (213)
T 3r06_A 89 QQYYNYPWTFGPGTKLEIKRADAKPTVSIF-PPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQD 167 (213)
T ss_dssp EECSSSSCEECCCEEEEECCCCBCCEEEEE-CCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCC
T ss_pred ecccCCceEEcCCceEEEeccCCCceeeee-CCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCcee
Confidence 99887653333 3566662 23333322 22333345677999999999876567889999999886521 0 000
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.........+.|.+.....+|.|.|+|.|.|....
T Consensus 168 ~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 168 SKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp TTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred CCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 00111111235777777778899999999997644
|
| >1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-17 Score=120.63 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=79.2
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
|+++|.++.+.. ..+++.|+|++ +.+++++|++|.|+|+. +...|......... ..+.+.+.+|.+++.|.|||
T Consensus 7 p~~pP~~l~v~~-~~~sv~L~W~p--P~~~~~~I~gY~vey~~-~~~~W~~~~~~~~~--~~t~~~v~~L~pg~~Y~FRV 80 (108)
T 1v5j_A 7 GLSPPRGLVAVR-TPRGVLLHWDP--PELVPKRLDGYVLEGRQ-GSQGWEVLDPAVAG--TETELLVPGLIKDVLYEFRL 80 (108)
T ss_dssp CCCCCEEEEEEE-CSSSEEEEEEC--CSCCSSCCCBEEEEEEE-TTCCCEEEEEEECS--SCCEEECCCCCTTSCEECCB
T ss_pred CCCCCcceEEEE-eCCEEEEEECC--CCCCCCCCcEEEEEEEe-CCCCcEEeeeecCC--CcCEEEeCCCCCCCEEEEEE
Confidence 348999999975 46789999999 45688999999999999 55779865543222 34678899999999999999
Q ss_pred EEecCCCCCCCCceEEEeecc
Q psy14886 466 QAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|+|.+|.|++|+.+.+.|..
T Consensus 81 ~A~n~~G~s~pS~~~~v~T~~ 101 (108)
T 1v5j_A 81 VAFAGSFVSDPSNTANVSTSG 101 (108)
T ss_dssp EEEETTEEEEECSCCCCCCSS
T ss_pred EEEcCCCCcCCCCCEEEEeCC
Confidence 999999999999999888864
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-18 Score=148.99 Aligned_cols=163 Identities=22% Similarity=0.323 Sum_probs=89.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EEC---cCC--CCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELL---NSE--TLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l---~~~--~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.+.|.+.+.|+|++ ..+ ... ........|+.. ...+|.|.+++ .+|+|.|+|.+.
T Consensus 35 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~ 113 (233)
T 3bqu_C 35 MSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENML-SEDVADYYCLQS 113 (233)
T ss_dssp ------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC------CCCCSEEEEEEC
T ss_pred EecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCC-HHHCEEEEEEEe
Confidence 468999999999988777789999953 211 000 000001223322 23489999999 999999999998
Q ss_pred cccCceEe-eEEEEEEe--cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCCCcEE--E--ee
Q psy14886 70 NQLKTRYS-SAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSGGRRK--I--FE 140 (505)
Q Consensus 70 ~~~~~~~~-~~~l~v~~--~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~~~~~--~--~~ 140 (505)
+..+.... ...|.|.. .+|.+...+.. ..+.+|+.++|.|.+.+. |.+ .+.|+++|..+..+.... . ..
T Consensus 114 ~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~ 191 (233)
T 3bqu_C 114 DNLPYTFGGGTNLEIKRADAAPTVSIFPPS--SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK 191 (233)
T ss_dssp SSSSCCBCCCCBC---CCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTT
T ss_pred cCCceeecCCEEEEEeCCCCCCEEEEeCCC--HHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCC
Confidence 76553322 23455543 23444332211 123469999999999885 443 799999998775431111 0 01
Q ss_pred C------CCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 141 N------GNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 141 ~------~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+ ..|.|..+..+|+|.|+|.|.|...
T Consensus 192 ~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 192 DSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp TCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 1 2478888888999999999998644
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=137.24 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=111.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC---eEEEEECCEEecC----------------CCcEEE----------eeCCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP---KFVWKKDGNIIGS----------------GGRRKI----------FENGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~---~i~W~~~g~~~~~----------------~~~~~~----------~~~~~l~i~ 147 (505)
+.+.+..|++++|.|.+.+.+.+ .|.|+|++..+.. ..+... ..+.+|.|.
T Consensus 9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 44678899999999999887665 4899997643210 111111 123469999
Q ss_pred CCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
+++.+|+|.|+|.+.+..+..... ..+.+..+|..... +.......+..+.+.|.+.+..++ ..+.|.+++......
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~P~-~~~~w~~~~~~~~~~ 166 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAE-AQEVTIGPQSVAVARCVSTGGRPP-ARITWISSLGGEAKD 166 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE-ECCBCCSSSCEEEEEEEEEEEBSC-CEEEEECSSCCEEEE
T ss_pred cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeec-ccceeecceeeeeeeeeecCCCCC-CEEEEEECCccccCC
Confidence 999999999999999887766555 34445444444333 333344556667777776654332 356787765443221
Q ss_pred CCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE--EEEEEEEc
Q psy14886 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS--TKTTVIVE 276 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~--~~~~l~v~ 276 (505)
..............+.|.|..+..+|+|.|+|.|.|..|... .+++|.|+
T Consensus 167 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~ 218 (225)
T 4fmk_A 167 TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR 218 (225)
T ss_dssp EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence 100000011111124689999999999999999999888654 44555443
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=138.74 Aligned_cols=172 Identities=18% Similarity=0.221 Sum_probs=115.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE----------------CCEEecCC---CcEEEee----CCCEEEcCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK----------------DGNIIGSG---GRRKIFE----NGNLLISPVSRDD 153 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~----------------~g~~~~~~---~~~~~~~----~~~l~i~~v~~~d 153 (505)
..+.+.+|++++|.|.+.+.+.+.+.|++ ++...... .++.+.. ..+|.|.+++.+|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D 88 (246)
T 4dzb_B 9 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPED 88 (246)
T ss_dssp SEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGG
T ss_pred cEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHH
Confidence 44678999999999999998888999998 33322221 3444432 1269999999999
Q ss_pred CEEEEEEEEcCCC----ceeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 154 SGIYSCTATNVHG----MDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 154 ~G~y~C~~~~~~g----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
+|.|.|.+.+..+ .......|.|.. +|.+....+....+..|+.+.|.|.+.+.+++.+.+.|+++|..+
T Consensus 89 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l 168 (246)
T 4dzb_B 89 SSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 168 (246)
T ss_dssp CEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred CEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEEC
Confidence 9999999987543 222335677764 333333333333445689999999999987666788999999888
Q ss_pred cCCCCCccc--------CCeeeecCCeEEEecCCCCC-CEEEEEEEEecCCcEE
Q psy14886 224 GNMDLNELE--------TPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKIS 268 (505)
Q Consensus 224 ~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 268 (505)
......... ........+.|.|.....+| .|.|+|.|.|......
T Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 169 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp CTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 653211000 00111112347777776677 9999999998765533
|
| >3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=141.74 Aligned_cols=224 Identities=11% Similarity=-0.018 Sum_probs=117.2
Q ss_pred EEecCCCCCCEEEEEEEEe------cCCcEEE-EEEEEE----cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceE
Q psy14886 244 EITNASFADAGEYECVVKS------TVGKIST-KTTVIV----EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 312 (505)
Q Consensus 244 ~i~~~~~~~~g~y~C~~~n------~~g~~~~-~~~l~v----~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y 312 (505)
....+.......|+..|.| ..|..+. +..+.. ..+|.+|.++.+......++.++|+++.+. .....|
T Consensus 91 ~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~~~-~~~~~Y 169 (380)
T 3lb6_C 91 YKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGV-LLDTNY 169 (380)
T ss_dssp EEEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC-------CCE
T ss_pred EEEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCCCC-CCCccE
Confidence 3344555667777888773 3343222 212221 245678889999999999999999987654 345789
Q ss_pred EEEEEeCCCCCeEEeeeccccceeeeecCce-eeEEe-eeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCC
Q psy14886 313 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRK-EASIE-NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390 (505)
Q Consensus 313 ~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~-~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P 390 (505)
.+.|+..+...+..+..... ..+.. ...+. .++.+++.|.|+|.|.|..|.+..+.. .+.+....++.||
T Consensus 170 ~l~y~~~~~~~~~~C~~~~~------~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~~~--~~~~~~~v~p~pP 241 (380)
T 3lb6_C 170 NLFYWYEGLDHALQCVDYIK------ADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYF--TFQLQNIVKPLPP 241 (380)
T ss_dssp EEEEECTTCSSCEECSEEEE------C--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCEEE--EECGGGSCCCCCC
T ss_pred EEEEEECCCCccccCCCccc------cCCceEEEEeCCCcccceeEEEEEEEEEcCCeeeccccE--EEcHHHcccCCCC
Confidence 99999876555544422111 00111 12222 136788999999999999988754322 4556666778899
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCC-ccceeeEEEEEEEec
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS-EFYYTEYEVKVQAIN 469 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~p~~~Y~~~v~a~n 469 (505)
.++.+...+.+++.|+|++|.. ...+.+++|.|+|+..+ ..|...... + .+.|.+ |.|++.|.|+|+|..
T Consensus 242 ~~l~v~~~~~~~l~l~W~~P~~-~~~~~~l~Yev~y~~~~-~~w~~~~~~---~----~~~l~~~L~p~t~Y~~qVRa~~ 312 (380)
T 3lb6_C 242 VYLTFTRESSCEIKLKWSIPLG-PIPARCFDYEIEIREDD-TTLVTATVE---N----ETYTLKTTNETRQLCFVVRSKV 312 (380)
T ss_dssp EEEEEC-------CEEEECCSS-SCCSTTEEEEECC---------CCEES---S----SCC------------CCEEEEE
T ss_pred ceEEEEEcCCCeEEEEECCCCC-CCCcceEEEEEEEEeCC-CCceEeccc---c----eEEEeCccCCCcEEEEEEEEEE
Confidence 9999987778899999998532 23357899999999864 456543321 1 356788 999999999999994
Q ss_pred C-----CC-CCCCCceEEEeec
Q psy14886 470 D-----VG-PGPESEVVTIWHD 485 (505)
Q Consensus 470 ~-----~G-~g~~s~~~~~~t~ 485 (505)
. .| .|++|+.+.+.|.
T Consensus 313 ~~~~~~~g~WSeWS~~~~~~t~ 334 (380)
T 3lb6_C 313 NIYCSDDGIWSEWSDKQCWEGE 334 (380)
T ss_dssp CTTTCSSCCCCCCCCC------
T ss_pred cccCCCCCCCCCCCCCEEEeCC
Confidence 3 34 2777887777775
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=148.00 Aligned_cols=170 Identities=16% Similarity=0.296 Sum_probs=111.5
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEec-----------------CCCcEEEeeC-----CCEEEcCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-----------------SGGRRKIFEN-----GNLLISPVSR 151 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~~-----------------~~~~~~~~~~-----~~l~i~~v~~ 151 (505)
...+.+|++++|.|.+.+.+ .+.+.|+++ |..+. ...++.+..+ .+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (344)
T 1za6_B 9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRS 88 (344)
T ss_dssp CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCc
Confidence 35689999999999998763 579999986 33220 1245555432 3699999999
Q ss_pred CCCEEEEEEEEcCCCceeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~ 227 (505)
+|+|.|+|.+.+..+.....+.|.|.. +|.+... ++...+..|+.+.|.|.+.+.++....+.|++++..+....
T Consensus 89 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 167 (344)
T 1za6_B 89 EDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT 167 (344)
T ss_dssp GGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEE-CCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEE
T ss_pred ccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEc-cccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeE
Confidence 999999999998654444556787763 2332222 22233468899999999998743224677999886532100
Q ss_pred CCc-ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEE
Q psy14886 228 LNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 269 (505)
Q Consensus 228 ~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~ 269 (505)
... ..........+.|.|..+..++ |.|+|.|.|..+....
T Consensus 168 ~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~ 209 (344)
T 1za6_B 168 FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV 209 (344)
T ss_dssp CCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEE
T ss_pred CCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence 000 0000111112468888887777 9999999999886543
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=138.94 Aligned_cols=169 Identities=17% Similarity=0.223 Sum_probs=112.6
Q ss_pred ceEEeeCCCeEEEEeecCCCC-----CCeEEEEECC--EEe------------cCCCcEEEeeCC---CEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-----KPKFVWKKDG--NII------------GSGGRRKIFENG---NLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-----~~~i~W~~~g--~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+ ....++.....+ +|.|.+++.+|+
T Consensus 42 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 121 (252)
T 3bkj_L 42 LSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDL 121 (252)
T ss_dssp SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred ceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccC
Confidence 456789999999999998887 5899999853 111 012344444333 699999999999
Q ss_pred EEEEEEEEcCCCcee-eeEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC-
Q psy14886 155 GIYSCTATNVHGMDE-SKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN- 229 (505)
Q Consensus 155 G~y~C~~~~~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~- 229 (505)
|.|.|.+.+..+... ....|.|.. +|.+.... ....+..|+.+.|.|.+.+.+++.+.+.|+++|..+......
T Consensus 122 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 200 (252)
T 3bkj_L 122 GVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFP-PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS 200 (252)
T ss_dssp EEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEEC-CCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEE
T ss_pred EEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeC-CChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeee
Confidence 999999998765332 225666654 23332222 222233688999999999865545678899999887543000
Q ss_pred ---cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 230 ---ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 230 ---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
...........+.|.|..+..+|.|.|+|.|.|....
T Consensus 201 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 201 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 0000001111245888888888999999999997654
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=137.42 Aligned_cols=183 Identities=16% Similarity=0.235 Sum_probs=113.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEECC--EE---e---c-----------CCCcEEEee-----CCCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--NI---I---G-----------SGGRRKIFE-----NGNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~~---~---~-----------~~~~~~~~~-----~~~l~i~~v~ 150 (505)
....+.+|++++|.|.+.+.+ .+.+.|++++ .. + . ...++.+.. +.+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (227)
T 1mju_H 8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT 87 (227)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCC
Confidence 346789999999999998776 5799999843 21 1 0 024555543 2369999999
Q ss_pred CCCCEEEEEEEEcCCCce-eeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecC
Q psy14886 151 RDDSGIYSCTATNVHGMD-ESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~-~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~ 225 (505)
.+|+|.|.|.+.+..+.. .....|.|.. .|.+.... ....+..|+.++|.|.+.+..+..+.+.|++++..+..
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~ 166 (227)
T 1mju_H 88 SDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA-PVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 166 (227)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC-CCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred cccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec-CCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence 999999999999753221 1235677754 23333222 22345679999999999986333357889998765321
Q ss_pred CCCC-cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCC
Q psy14886 226 MDLN-ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282 (505)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p 282 (505)
.... .... ......+.|.|.....++ |.|+|.|.|..+.......+.+..+|..|
T Consensus 167 ~~~~~~~~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~ 222 (227)
T 1mju_H 167 HTFPAVLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP 222 (227)
T ss_dssp EECCCEEET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred EECCceecC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence 0000 0000 111223568888888777 99999999988777666676666666543
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-18 Score=144.73 Aligned_cols=162 Identities=15% Similarity=0.215 Sum_probs=104.3
Q ss_pred CCCCCceEEEEEEecc---C-CCeEEEEECCEECcCCCC---CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGV---P-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~---p-~~~~~W~~~~~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.+|++++|.|.+.+. | .+.|.|+|++..+..... .....+++. ..++|.|.+++ .+|+|.|+|.+.|..+
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~-~~D~g~Y~C~~~~~~~ 100 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR-VVSTLPIQHQD-WMSGKEFKCKVNNKDL 100 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE-EEEEEECCHHH-HHTTCCEEEEEEETTC
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEE-EEEEEEEcHHH-cCCCCeEEEEEECCcC
Confidence 3589999999999886 4 379999999987653210 000122332 23579999999 9999999999998765
Q ss_pred ceEeeEEE----EEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCCCc--EEEeeCCCEE
Q psy14886 74 TRYSSAQL----RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSGGR--RKIFENGNLL 145 (505)
Q Consensus 74 ~~~~~~~l----~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~~~--~~~~~~~~l~ 145 (505)
.......+ .+. .+|.+.+.+.... ..+|+.++|.|.+.| +|.+ .|.|+++|..+..... .....++++.
T Consensus 101 ~~~~~~~v~~~~~~~-~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~ 177 (218)
T 2rgs_A 101 PSPIERTISKIKGLV-RAPQVYILPPPAE--QLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYF 177 (218)
T ss_dssp SSCEEEEECCCCCCC-BCCEEEEECCCGG--GTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEE
T ss_pred CCcceEEEeecCCCC-CCCEEEEECCChH--HhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEE
Confidence 43111122 122 3454433332211 235999999999998 5665 9999999998743211 1123344433
Q ss_pred ------EcCCCCCCCEEEEEEEEcCCCc
Q psy14886 146 ------ISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 146 ------i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
+......|.|.|+|.|.|....
T Consensus 178 ~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 178 IYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp EEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred EEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 3333344689999999987644
|
| >1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=122.59 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=88.4
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEE-EeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE-TLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~ 456 (505)
.+.|.+..|+.+|.++.+...+.++|.|.|+++..+..+|.|++|+|+|+..+...|... ..........+.+.|.+|.
T Consensus 7 ~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 86 (122)
T 1va9_A 7 GISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLK 86 (122)
T ss_dssp SSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCC
T ss_pred EEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEeCCCC
Confidence 678888999889999999988999999999996544488999999999999874433211 1111112245788999999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 87 p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 116 (122)
T 1va9_A 87 KFAQYGVVVQAFNRAGTGPSSSEINATTLE 116 (122)
T ss_dssp SSCCEEEEEEEEETTEECCCCCCEECCCCS
T ss_pred CCCEEEEEEEEEcCCCCCCCccCEEEEeCC
Confidence 999999999999999999999999988864
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-16 Score=136.79 Aligned_cols=161 Identities=20% Similarity=0.203 Sum_probs=102.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc---CCC-------C-CCCCCCcEEE-----ECCeEEEEcCCCCCCCe
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN---SET-------L-PLEDQDRYFI-----QDNVLTIRYLNPERDPA 62 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~---~~~-------~-~~~~~~~~~~-----~~~~L~i~~~~~~~d~G 62 (505)
+.+|++++|.|.+.+.+.+.+.|+|. +.... ... . ......++.. ...+|.|.+++ .+|+|
T Consensus 14 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~DsG 92 (259)
T 3omz_A 14 RQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI-ENDSG 92 (259)
T ss_dssp EETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC-GGGCE
T ss_pred ecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC-cccCE
Confidence 35899999999999888889999992 11110 000 0 0001122222 23579999999 99999
Q ss_pred EEEEEEEcccCc---eEeeEEEEEEec----------------CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCCeEE
Q psy14886 63 MYQCRAKNQLKT---RYSSAQLRVLTL----------------KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFV 122 (505)
Q Consensus 63 ~Y~C~~~~~~~~---~~~~~~l~v~~~----------------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~i~ 122 (505)
.|.|.+.+..+. ......|.|... .+.+... +....+.+|++++|.|.+.+. +.+.+.
T Consensus 93 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~v~ 170 (259)
T 3omz_A 93 VYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQA--QSSVSMPVRKAVTLNCLYETSWWSYYIF 170 (259)
T ss_dssp EEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECC--CCCEEEETTCCEEECCEEECCCSSCEEE
T ss_pred EEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEe--CCEEEEcCCCCEEEEEECCCccCCceEE
Confidence 999999987652 223466777642 1222222 345778999999999998774 778999
Q ss_pred EEECC--EEec------------CCCcEEEee-----CCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 123 WKKDG--NIIG------------SGGRRKIFE-----NGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 123 W~~~g--~~~~------------~~~~~~~~~-----~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
|++++ ..+. ...++.+.. ...|.|.+++.+|+|.|.|.+.+.
T Consensus 171 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 171 WYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp EEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred EeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 99843 1110 013343331 235999999999999999999853
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=140.47 Aligned_cols=166 Identities=18% Similarity=0.281 Sum_probs=107.2
Q ss_pred CCCCCceEEEEEEeccCC----CeEEEEEC--CEECc---CC------CCCCCCCCcEEEE------CCeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPD----VTYSWFRN--GELLN---SE------TLPLEDQDRYFIQ------DNVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~----~~~~W~~~--~~~l~---~~------~~~~~~~~~~~~~------~~~L~i~~~~~~~ 59 (505)
+.+|++++|.|.+.+.|. +.+.|+|+ +..+. .. .......+|+.+. ..+|.|.+++ .+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~ 90 (228)
T 3bae_H 12 LKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD-TA 90 (228)
T ss_dssp ECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC-GG
T ss_pred ecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC-cc
Confidence 468999999999988764 88999984 22211 00 0000124577653 2589999999 99
Q ss_pred CCeEEEEEEEcccC------c--eE-eeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEE
Q psy14886 60 DPAMYQCRAKNQLK------T--RY-SSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKK 125 (505)
Q Consensus 60 d~G~Y~C~~~~~~~------~--~~-~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~ 125 (505)
|+|.|.|.+.+..+ . .. ..+.|.|... +|.+.... +...+.+|+.++|.|.+.+. |.+ .+.|++
T Consensus 91 D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~ 168 (228)
T 3bae_H 91 DTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLA--PVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 168 (228)
T ss_dssp GCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEEC--C-----CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEec--ccccccCCCCEEEEEEEccEeCCCEEEEEee
Confidence 99999999988654 1 11 2367777631 23332221 11235789999999999886 777 999999
Q ss_pred CCEEecCCCcEEE------eeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 126 DGNIIGSGGRRKI------FENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 126 ~g~~~~~~~~~~~------~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
++..+........ .....|.|.++..+| |.|+|.|.|..+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~ 218 (228)
T 3bae_H 169 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV 218 (228)
T ss_dssp GTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred CCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence 8865321111111 112358888888756 9999999998776543
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=141.26 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=108.5
Q ss_pred CCCCCceEEEEEEeccC------CCeEEEEEC--CEECc---CC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVP------DVTYSWFRN--GELLN---SE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p------~~~~~W~~~--~~~l~---~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~ 63 (505)
|.+|++++|.|.+.+.+ .+.+.|+|+ +..+. .. .......+|+.+. ..+|.|.+++ .+|+|.
T Consensus 17 v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~-~~DsG~ 95 (264)
T 2gjj_A 17 VSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVK-AEDLAV 95 (264)
T ss_dssp EETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEE
T ss_pred ecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCC-HHHCEE
Confidence 46899999999998876 678999995 22111 00 0000123566653 2489999999 999999
Q ss_pred EEEEEEcccCceE-eeEEEEEEecC-----------------CCccCCCCCceEEeeCCCeEEEEeecCCCCC--CeEEE
Q psy14886 64 YQCRAKNQLKTRY-SSAQLRVLTLK-----------------PSFKKRPLESETYAGEGGNVTIFCNPEAAPK--PKFVW 123 (505)
Q Consensus 64 Y~C~~~~~~~~~~-~~~~l~v~~~~-----------------p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~--~~i~W 123 (505)
|.|.+.+..+... ..+.|.|...+ |.+.+... ....+.+|++++|.|.+.+.+. +.+.|
T Consensus 96 Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W 174 (264)
T 2gjj_A 96 YYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQS-GPEVVKTGASVKISCKASGYSFTGYFINW 174 (264)
T ss_dssp EEEEECSSSSCEECCCEEEEEECC-------------------CCEEEEC-CCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred EEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCC-CCEEEcCCCcEEEEEEEeCCccCCeEEEE
Confidence 9999987654322 24567777531 22222111 2246899999999999987763 79999
Q ss_pred EECC--E---Eec---C-----------CCcEEEee-----CCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 124 KKDG--N---IIG---S-----------GGRRKIFE-----NGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 124 ~~~g--~---~~~---~-----------~~~~~~~~-----~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
+++. . .+. . ..++.+.. ..+|.|.+++.+|+|.|.|.+.|.
T Consensus 175 ~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 175 VKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 9852 2 121 0 23343321 236999999999999999999985
|
| >2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-17 Score=120.38 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=85.0
Q ss_pred CCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
+.+..|+.+|.++.+...+.++|.|.|++++....++.+.+|.|+|+..+...|..... ..+.+.|.+|.|++.
T Consensus 3 t~e~~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~~~~------~~~~~~i~~L~p~t~ 76 (103)
T 2edy_A 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNIT------TDTRFTLTGLKPDTT 76 (103)
T ss_dssp TTCCCCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCCEEEEEE------SSSCCEECSCCTTCC
T ss_pred CCCCCCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCccEEEcC------CcceEEEcCCCCCCE
Confidence 45778889999999998899999999999654678899999999999988655543321 235678999999999
Q ss_pred EEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 461 YEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 461 Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|.|+|+|+|.+|.|++|+.+.+.|.|
T Consensus 77 Y~~~V~A~n~~G~g~~S~~~~~~T~p 102 (103)
T 2edy_A 77 YDIKVRAWTSKGSGPLSPSIQSRTMP 102 (103)
T ss_dssp EEEECCEECSSCBCCCCCCCCCCCCC
T ss_pred EEEEEEEECCCCCCCCCCCEEEEecc
Confidence 99999999999999999999988876
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=138.86 Aligned_cols=161 Identities=19% Similarity=0.303 Sum_probs=106.5
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EECcC------C----CCCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--ELLNS------E----TLPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~l~~------~----~~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+. +...+.|+|.. ..+.. . .......+|+.+. . .+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 90 (280)
T 3fku_X 12 KKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLR-SED 90 (280)
T ss_dssp ECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCC-STT
T ss_pred ECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCC-hhh
Confidence 4689999999999874 56889999842 11110 0 0000112456553 2 379999999 999
Q ss_pred CeEEEEEEEccc--------Cc-eEeeEEEEEEe--------------cCCCccCCCCCceEEeeCCCeEEEEeecCC-C
Q psy14886 61 PAMYQCRAKNQL--------KT-RYSSAQLRVLT--------------LKPSFKKRPLESETYAGEGGNVTIFCNPEA-A 116 (505)
Q Consensus 61 ~G~Y~C~~~~~~--------~~-~~~~~~l~v~~--------------~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~ 116 (505)
+|.|.|.+.+.. .. ......|.|.. .++.+... +. ..+.+|++++|.|.+.+ .
T Consensus 91 sG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~--p~-~~v~~G~~v~L~C~~~~~~ 167 (280)
T 3fku_X 91 TAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQP--PS-VSKGLRQTATLTCTGNSNN 167 (280)
T ss_dssp CEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCC--SE-EEECTTCCEEEEEECCCCC
T ss_pred CEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeC--Cc-EEEecCCCEEEEEEecCCC
Confidence 999999998761 11 22245666654 12233332 23 78999999999999988 4
Q ss_pred C-CCeEEEEEC--CEEec------------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 117 P-KPKFVWKKD--GNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 117 p-~~~i~W~~~--g~~~~------------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+ .+.+.|++. +..+. ...++....++ .|.|.+++.+|+|.|.|.+.+..
T Consensus 168 ~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 168 VGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp CCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 3 479999872 22211 12344443333 39999999999999999999865
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=140.30 Aligned_cols=161 Identities=19% Similarity=0.295 Sum_probs=105.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--------------CCEECcCCCCCCCCCCcEEEEC-----CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--------------NGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--------------~~~~l~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.| ..+.+.+.+.|+| ++..+..... ..+|+.+.. .+|.|.+++ .+|+
T Consensus 14 v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~sL~I~~v~-~~D~ 88 (245)
T 4ei6_B 14 IDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKL---FKDQFSVERPDGSYFTLKIQPTA-LEDS 88 (245)
T ss_dssp EETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTT---CCTTEEEECCTTSCEEEEECSCC-GGGC
T ss_pred ecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCC---ccCCEEEEeccCceEEEEECCCC-HhHC
Confidence 35899999999 5567888999999 2222211110 126676643 389999999 9999
Q ss_pred eEEEEEEEccc----CceEeeEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEe
Q psy14886 62 AMYQCRAKNQL----KTRYSSAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNII 130 (505)
Q Consensus 62 G~Y~C~~~~~~----~~~~~~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~ 130 (505)
|.|+|.+.+.. ......+.|.|.. .+|.+.... +....+.+|+.++|.|.+.+. |.+ .+.|+++|..+
T Consensus 89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l 167 (245)
T 4ei6_B 89 AVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167 (245)
T ss_dssp EEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred EEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeC-CCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence 99999998532 1222345677763 233332221 111224569999999999884 544 89999999988
Q ss_pred cCCCcEEEe--------eCC------CEEEcCCCCCC-CEEEEEEEEcCCCc
Q psy14886 131 GSGGRRKIF--------ENG------NLLISPVSRDD-SGIYSCTATNVHGM 167 (505)
Q Consensus 131 ~~~~~~~~~--------~~~------~l~i~~v~~~d-~G~y~C~~~~~~g~ 167 (505)
......... .++ .|.|......| .|.|+|.|.+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 168 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp CTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 653221110 122 27777777777 99999999986443
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=135.81 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=112.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EE---e---------cCCCcEEEee---CCCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NI---I---------GSGGRRKIFE---NGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~---~---------~~~~~~~~~~---~~~l~i~~v~~~d~G~y~C 159 (505)
....+.+|++++|.|.+.+.+.+.+.|++++ .. + ....++.... +.+|.|.+++.+|+|.|+|
T Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 111 (237)
T 3sob_L 32 SSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC 111 (237)
T ss_dssp SEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEE
Confidence 4567899999999999998888899999832 11 0 1123444432 2359999999999999999
Q ss_pred EEEcCCCcee-eeEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCC----CCcc
Q psy14886 160 TATNVHGMDE-SKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD----LNEL 231 (505)
Q Consensus 160 ~~~~~~g~~~-~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~ 231 (505)
.+.+..+... ....+.|.. +|.+... +.......|+.+.|.|.+.+.+++...+.|+++|..+.... ....
T Consensus 112 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 190 (237)
T 3sob_L 112 QQSYTTPPTFGQGTKVEIKRTVAAPSVFIF-PPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD 190 (237)
T ss_dssp EECSSSSCEECCCEEEEEECCCBCCEEEEE-CCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCC
T ss_pred eeccCCceEEcCcEEEEEecCCCCCceEEe-CCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccc
Confidence 9988765332 235666643 2332222 22222335788999999998654356888999998876421 0000
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
.........+.|.+.....+|.|.|+|.|.|.....
T Consensus 191 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 226 (237)
T 3sob_L 191 SKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 226 (237)
T ss_dssp TTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred cCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence 011111123467788888889999999999987643
|
| >1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-17 Score=127.19 Aligned_cols=115 Identities=24% Similarity=0.235 Sum_probs=94.0
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.|.+|... .+.|.+..|..+|.++++...+.++|.|.|+++.....++.|++|+|+|+..+...|.... ......
T Consensus 1 G~g~~S~~~-~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~ 76 (132)
T 1x5h_A 1 GSSGSSGDV-AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTET---LVSGTQ 76 (132)
T ss_dssp CCCCCCCCC-CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECC---BCCTTC
T ss_pred CcCCCCCCE-EEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEE---EeCCCc
Confidence 567777765 7888888898899999999899999999999954444889999999999997744333211 112245
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.++|.+
T Consensus 77 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 115 (132)
T 1x5h_A 77 LSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115 (132)
T ss_dssp CEEEEECCCSSCEEEEECEEEETTEEEEECCCEEEECCS
T ss_pred cEEEeCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcCc
Confidence 688899999999999999999999999999999998865
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-15 Score=123.06 Aligned_cols=153 Identities=21% Similarity=0.187 Sum_probs=107.9
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEEC-CEEec------------CC--CcEEE-eeCCCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKD-GNIIG------------SG--GRRKI-FENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~-g~~~~------------~~--~~~~~-~~~~~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.+.+ .+.+.|.|+++ +..+. .. .+..+ ..+++|.|.+++.+|+|.|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence 4467899999999999854 34679999994 32221 11 45555 456789999999999999999
Q ss_pred EEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeec
Q psy14886 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239 (505)
Q Consensus 160 ~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 239 (505)
.+.+.. .....+.|.|..++.. +.+. ..+..+.|.|.+...|. ..+.|++++..+.. ..
T Consensus 87 ~v~~~~-~~~~~~~L~V~~~~~~-----P~i~-~~~~~v~L~C~~~~gp~--p~i~W~~~~~~l~~------------~~ 145 (180)
T 2dru_A 87 RMLHET-EDQWKITMEVYEMVSK-----PMIY-WECSNATLTCEVLEGTD--VELKLYQGKEHLRS------------LR 145 (180)
T ss_dssp EEESSS-EEEEEEEEEEECCCCC-----CEEE-EEGGGTEEEEECSSCTT--CEEEEEETTEEEEE------------ES
T ss_pred EEEcCC-eEEEEEEEEEECCCCC-----CEEE-ecCCCEEEEEEeCCCCC--CEEEEEECCeECcC------------CC
Confidence 998766 5556678888654321 1122 24567999999944454 46789999987641 12
Q ss_pred CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEE
Q psy14886 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTT 272 (505)
Q Consensus 240 ~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 272 (505)
+.++.+.. .+|.|.|+|.|.|..+.......
T Consensus 146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 146 QKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV 176 (180)
T ss_dssp SSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred CCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence 34555533 67899999999999987665543
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=126.11 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=106.7
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC------------CCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS------------GGRRKIF-ENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~------------~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+.+.+|++|+|.|.+.+ |.+.|.|++++..+.. ..+..+. .+++|.|.+++.+|+|.|.|.+.+.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456889999999999854 7889999998865421 1233332 4578999999999999999999988
Q ss_pred CCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEE
Q psy14886 165 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244 (505)
Q Consensus 165 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (505)
.| ...+.|.|..++... .+... .....|.|.+.+.+.| .+.|++++..+.... ...+.
T Consensus 83 ~~--~~~~~L~V~~~~~~p-----~i~~~-~~~~~L~C~~~~~p~p--~i~W~~~~~~l~~~~------------~~~l~ 140 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMVSKP-----MIYWE-CSNATLTCEVLEGTDV--ELKLYQGKEHLRSLR------------QKTMS 140 (171)
T ss_dssp CS--CEEEEEEEECCCCCC-----EEEEE-TTTTEEEEECSSCSSC--EEEEEETTEEEEEES------------SSEEE
T ss_pred CC--cEEEEEEEECcCCCC-----EEEEe-cCCcEEEEEeCCCCCc--EEEEEECCEECcCCc------------ceEEE
Confidence 77 566788886643211 11111 1124799999887654 677999998775321 12333
Q ss_pred EecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 245 ITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 245 i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
+. ...+.|.|+|.|.|..|.......+
T Consensus 141 ~~--~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 141 YQ--WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp EE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred Ee--ccCCCceEEEEEEcccCcccceeEE
Confidence 33 3678899999999999987666544
|
| >2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=117.06 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=83.6
Q ss_pred CCCCCCCCCCceeeeecc--ccccEEEEEEeCCccccCCCCceEEEEEEEcC---CCCcEEEEeeecCceeeEEEEcCCc
Q psy14886 381 TPADKPYQAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKN---DTEFQSETLKEYGNVGIAVVRIPSE 455 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~~~--~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~L 455 (505)
|.+..|+.+|.++.+... +.++|.|.|++ +.+.+|.|++|.|+|+..+ ...|....... ..+.+.|.+|
T Consensus 3 T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~L 76 (114)
T 2ede_A 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQP--PLEANGKITAYILFYTLDKNIPIDDWIMETISG----DRLTHQIMDL 76 (114)
T ss_dssp CCCCCCCSCCEEEEEEECSSCSSCEEEEEEC--CSSCSSCCSEEEEEEESCSSSCTTTSEEEEEET----TCCEEEECSC
T ss_pred CCCCCCCCCCcceEEEEccCCCCEEEEEECC--CCCCCCceeEEEEEEEeCCCCCccceEEEEECC----CceEEEEcCC
Confidence 557788899999999876 77999999998 4677889999999999855 23566444332 3467899999
Q ss_pred cceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 456 FYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 456 ~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 77 ~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 107 (114)
T 2ede_A 77 NLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107 (114)
T ss_dssp CSSCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred CCCCEEEEEEEEEeCCcCcCCcccEEEEecC
Confidence 9999999999999999999999999998864
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-16 Score=131.16 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=111.6
Q ss_pred ceEEeeCCCeEEEEeecCCC-------CCCeEEEEECCEE------e-----------cCCCcEEEee-----CCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-------PKPKFVWKKDGNI------I-----------GSGGRRKIFE-----NGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-------p~~~i~W~~~g~~------~-----------~~~~~~~~~~-----~~~l~i~ 147 (505)
..+.+.+|++++|.|.+.+. +.+.+.|++++.. + ....++.+.. +.+|.|.
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~ 87 (214)
T 2zg1_A 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIG 87 (214)
T ss_dssp SEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred cEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEc
Confidence 45678999999999998654 4679999997642 1 0123444432 2379999
Q ss_pred CCCCCCCEEEEEEEEcCCCcee----eeEEEEEEeCCeeee-eCCCceEEEeeccEEEEEEeeec-C-CCCeEEEEEeCC
Q psy14886 148 PVSRDDSGIYSCTATNVHGMDE----SKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRCSAHTE-E-LLDVAYIWTHNG 220 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~~----~~~~l~v~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~~~~w~~~~ 220 (505)
+++.+|+|.|.|.+.+..+... ..+.|.|...+.... ..+. .+..|+.++|.|.+.+. + .|...+.|++++
T Consensus 88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~ 165 (214)
T 2zg1_A 88 DARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165 (214)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESST
T ss_pred cCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEEEeCCC
Confidence 9999999999999998763321 357788876432111 1111 25689999999999774 1 234577899987
Q ss_pred EEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc--EEEEEEE
Q psy14886 221 VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--ISTKTTV 273 (505)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~--~~~~~~l 273 (505)
...... . ....+.|.|..+..++.|.|+|.|.|..+. .+..+.|
T Consensus 166 ~~~~~~--------~-~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l 211 (214)
T 2zg1_A 166 LSPLDP--------E-TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211 (214)
T ss_dssp TSSSCS--------S-CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred CccCCC--------C-ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence 543211 1 134578999999899999999999997654 3444444
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-17 Score=139.53 Aligned_cols=163 Identities=17% Similarity=0.238 Sum_probs=107.0
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc----C----C--CCCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN----S----E--TLPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~----~----~--~~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. . . .......+|+.+. ..+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 90 (225)
T 1op3_H 12 VKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR-VED 90 (225)
T ss_dssp EETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC-hhh
Confidence 46899999999998766 6889999953 2110 0 0 0000124577653 2589999999 999
Q ss_pred CeEEEEEEEcccC-----c--e-EeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECC
Q psy14886 61 PAMYQCRAKNQLK-----T--R-YSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDG 127 (505)
Q Consensus 61 ~G~Y~C~~~~~~~-----~--~-~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g 127 (505)
+|.|.|.+.+..+ . . ...+.|.|... +|.+....... .+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 168 (225)
T 1op3_H 91 TAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSWNSGA 168 (225)
T ss_dssp CEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT--TCCCCCEEEEEEEEEEEBSSCCEEECCTTS
T ss_pred CEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc--cccCCCcEEEEEEEEeEECCCeEEEEecCC
Confidence 9999999998754 2 1 12467777752 23332211111 24689999999999876 766 99999988
Q ss_pred EEecCC-CcEEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 128 NIIGSG-GRRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 128 ~~~~~~-~~~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
..+... .......+ ..|.|.++..+| |.|+|.|.|..+.
T Consensus 169 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 169 LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp CCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred CcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 653210 00011112 248888888888 9999999986544
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=135.59 Aligned_cols=161 Identities=19% Similarity=0.312 Sum_probs=105.9
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc----CCC--------CCCCCCCcEEEEC------CeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN----SET--------LPLEDQDRYFIQD------NVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~----~~~--------~~~~~~~~~~~~~------~~L~i~~~~~~ 58 (505)
+.+|++++|.|.+.+.+ ...+.|+|.. ..+. ... ......+|+.+.. .+|.|.+++ .
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~ 90 (221)
T 3m8o_H 12 VQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK-S 90 (221)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC-G
T ss_pred EcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC-H
Confidence 46899999999998743 6899999842 1110 000 0001235666532 269999999 9
Q ss_pred CCCeEEEEEEEcccC--ceEeeEEEEEEe---cCCCcc-CCCCCceEEeeCCCeEEEEeecCC-CCC--CeEEEEECCEE
Q psy14886 59 RDPAMYQCRAKNQLK--TRYSSAQLRVLT---LKPSFK-KRPLESETYAGEGGNVTIFCNPEA-APK--PKFVWKKDGNI 129 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~--~~~~~~~l~v~~---~~p~~~-~~~~~~~~~v~~g~~v~l~C~~~~-~p~--~~i~W~~~g~~ 129 (505)
+|+|.|.|.+.+... .....+.|.|.. .+|.+. ..+ ... .+|+.++|.|.+.+ .|. +.+.|+++|..
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~--~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~ 166 (221)
T 3m8o_H 91 DDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSL--CST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQG 166 (221)
T ss_dssp GGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEEC--CSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred HHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecC--ccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence 999999999987631 222345666652 122222 111 111 58999999999988 665 49999998876
Q ss_pred ec----------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 130 IG----------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 130 ~~----------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+. .+..+.. ...|.|..+...|+|.|+|.|.+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 167 VTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp CEEEECCCEECSSSSCEEE--EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred CceEEcCceeeCCCCcEEE--EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 52 1222222 1248899999999999999999876543
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-17 Score=148.91 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=102.9
Q ss_pred CeEEEEeecCCC-C-CCeEEEEECCEEecCCCcE--EEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 105 GNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGGRR--KIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 105 ~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~~--~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
+.+.|.|.+.+. | .+.|.|+++|..+...... ....++ .|.|.++...|+|.|+|.|.|..+.....+.+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 104 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK 104 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence 699999999885 4 4699999999988643211 111122 36677777779999999999977654433321
Q ss_pred EEE---eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCC--eEEEEEeCC-EEecCCCCCc--ccCCeeeecCCeEEEe
Q psy14886 175 IVL---HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD--VAYIWTHNG-VRIGNMDLNE--LETPNINIDGGLLEIT 246 (505)
Q Consensus 175 ~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~~w~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~i~ 246 (505)
.+. ..|......+....+..|+.+.|.|.+.+.++.. +.+.|++++ ..+....... .....+ ...+.|.|.
T Consensus 105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~-~~~~~L~I~ 183 (323)
T 2wqr_A 105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTL-TVTSTLPVG 183 (323)
T ss_dssp CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCE-EEEEEEECC
T ss_pred CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCE-EEEEEEEEC
Confidence 111 1233333334444567899999999999875322 578899965 3332211000 000011 123468899
Q ss_pred cCCCCCCEEEEEEEEecCCcE
Q psy14886 247 NASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 247 ~~~~~~~g~y~C~~~n~~g~~ 267 (505)
.+..+|.|.|+|.|.|..+..
T Consensus 184 ~~~~~D~G~Y~C~a~n~~~~~ 204 (323)
T 2wqr_A 184 TRDWIEGETYQCRVTHPHLPR 204 (323)
T ss_dssp HHHHHTTCCEEEEEECTTSSS
T ss_pred HHHccCCCCEEEEEECCCCCC
Confidence 999999999999999986543
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=134.93 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=107.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc---C-C--C---CCCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN---S-E--T---LPLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~---~-~--~---~~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+.+ ...+.|+|.. ..+. . . . ......+|+.+.. .+|.|.+++ .+|+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~ 90 (232)
T 1dn0_B 12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT-AADT 90 (232)
T ss_dssp ECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGGC
T ss_pred EeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC-cccC
Confidence 46899999999998764 5789999943 2111 0 0 0 0001246776531 289999999 9999
Q ss_pred eEEEEEEEccc--Cc----eEeeEEEEEEec---CCCccCCCCCceEEeeCC-CeEEEEeecCCC-CCC-eEEEEE-CCE
Q psy14886 62 AMYQCRAKNQL--KT----RYSSAQLRVLTL---KPSFKKRPLESETYAGEG-GNVTIFCNPEAA-PKP-KFVWKK-DGN 128 (505)
Q Consensus 62 G~Y~C~~~~~~--~~----~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g-~~v~l~C~~~~~-p~~-~i~W~~-~g~ 128 (505)
|.|.|.+.+.. +. ....+.|.|... +|.+.... +...+..| +.++|.|.+.+. |.+ .+.|++ +|.
T Consensus 91 G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (232)
T 1dn0_B 91 AVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLV--SCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS 168 (232)
T ss_dssp EEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEE--CC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred EEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEec--cccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence 99999998321 11 112457777642 23222111 11124478 999999999886 766 999999 888
Q ss_pred EecCC---CcE----EEeeCCCEEEcCCCC--CCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 129 IIGSG---GRR----KIFENGNLLISPVSR--DDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 129 ~~~~~---~~~----~~~~~~~l~i~~v~~--~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+... ... .......|.|..+.. +|.|.|+|.|.|..+.......+.+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~ 225 (232)
T 1dn0_B 169 DISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV 225 (232)
T ss_dssp EECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred ceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence 76430 000 011123588888876 7899999999999887655544443
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=134.81 Aligned_cols=173 Identities=16% Similarity=0.255 Sum_probs=110.6
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEec-----------------CCCcEEEee-----CCCEEEcCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-----------------SGGRRKIFE-----NGNLLISPVSR 151 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~~-----------------~~~~~~~~~-----~~~l~i~~v~~ 151 (505)
...+.+|++++|.|.+.+.+ .+.+.|+++ |..+. ...++.+.. ..+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (219)
T 1c1e_H 9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN 88 (219)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence 35688999999999998765 679999986 33221 123444432 23699999999
Q ss_pred CCCEEEEEEEEcCCCce----eeeEEEEEEeC----CeeeeeCCCceEEEeeccEEEEEEeee-cCCCCeEEEEEeCCEE
Q psy14886 152 DDSGIYSCTATNVHGMD----ESKGRLIVLHG----PSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVR 222 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~----~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~w~~~~~~ 222 (505)
+|+|.|.|.+.+..+.. ...+.|.|... |.+... ++...+..|+.+.|.|.+.+ .|.| +.+.|++++..
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g~~ 166 (219)
T 1c1e_H 89 EDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLS 166 (219)
T ss_dssp GGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEE-CCCSSSCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBC
T ss_pred ccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEe-cCccccccCCeEEEEEEcccccCCC-eEEEEEeCCcc
Confidence 99999999999876421 23466777653 333222 22233467999999999998 5554 46789998865
Q ss_pred ecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
+.................+.|.|..... |.|.|+|.|.|..|.......+
T Consensus 167 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 167 SGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp TTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred cceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence 3211000000001111224677755444 5599999999998876544443
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=136.22 Aligned_cols=162 Identities=16% Similarity=0.266 Sum_probs=105.1
Q ss_pred CCCCCceEEEEEEeccC-----CCeEEEEECC--EEC---cCC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVP-----DVTYSWFRNG--ELL---NSE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----~~~~~W~~~~--~~l---~~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y 64 (505)
|.+|++++|.|.+.+.+ .+.+.|+|++ ..+ ... ........|+.+. ..+|.|.+++ .+|+|.|
T Consensus 27 v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~-~~DsG~Y 105 (268)
T 1x9q_A 27 VSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVE-AEDLGVY 105 (268)
T ss_dssp CCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEEE
T ss_pred ecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCC-hhHCEEE
Confidence 57999999999998766 4889999953 211 100 0000123566653 2379999999 9999999
Q ss_pred EEEEEcccCceE-eeEEEEEEecC----CCc-----------------cCCCCCceEEeeCCCeEEEEeecCCCCC--Ce
Q psy14886 65 QCRAKNQLKTRY-SSAQLRVLTLK----PSF-----------------KKRPLESETYAGEGGNVTIFCNPEAAPK--PK 120 (505)
Q Consensus 65 ~C~~~~~~~~~~-~~~~l~v~~~~----p~~-----------------~~~~~~~~~~v~~g~~v~l~C~~~~~p~--~~ 120 (505)
.|.+.+..+... ..+.|.|...+ |.+ .+.. +....+.+|++++|.|.+.+.+. +.
T Consensus 106 ~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~ 184 (268)
T 1x9q_A 106 FCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDE-TGGGLVQPGGAMKLSCVTSGFTFGHYW 184 (268)
T ss_dssp EEEECSSSSCEECCCEEEC------------------------CGGGCEEEE-ECCEEECTTCCEEEEEEEESSCGGGCE
T ss_pred EEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEEC-CCceEecCCCcEEEEEEecCccccccE
Confidence 999988654322 23556665421 100 0100 12457899999999999987753 79
Q ss_pred EEEEEC--CEEe-------------------cCCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 121 FVWKKD--GNII-------------------GSGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 121 i~W~~~--g~~~-------------------~~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
+.|+++ +..+ ....++.+..+ .+|.|.+++.+|+|.|+|.+.+.
T Consensus 185 v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 185 MNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 999984 2221 01234444322 36999999999999999999863
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=133.74 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=104.0
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE---E-EeeCCCEEEcCCCCCCCEEEEEEEEcCC-----Ccee
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---K-IFENGNLLISPVSRDDSGIYSCTATNVH-----GMDE 169 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~---~-~~~~~~l~i~~v~~~d~G~y~C~~~~~~-----g~~~ 169 (505)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... . ...++.|.|.+++.+|+|.|+|.+.+.. ....
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s 95 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence 45889999999999974 67799999988754321110 0 0124569999999999999999998643 1223
Q ss_pred eeEEEEEEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee--ecCCeEEE
Q psy14886 170 SKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEI 245 (505)
Q Consensus 170 ~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i 245 (505)
..+.|.|... ++.+...+. ..+..|+.++|.|.+.+. . ..+.|+++|..+..... ..... .....|.|
T Consensus 96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~~-~--~~~~w~k~g~~~~~~~~----~~~~~~~~~~~~L~i 167 (201)
T 1nkr_A 96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRSS-Y--DMYHLSREGEAHERRLP----AGPKVNGTFQADFPL 167 (201)
T ss_dssp CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESSC-C--SEEEEEETTCSSCEEEE----CEEEETTEEEEEEEE
T ss_pred CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCCC-C--ceEEEEECCcccCcccc----cccccCCceEEEEEe
Confidence 4467777653 222222222 467899999999998753 2 46789999865532110 00000 11457889
Q ss_pred ecCCCCCCEEEEEEEEec
Q psy14886 246 TNASFADAGEYECVVKST 263 (505)
Q Consensus 246 ~~~~~~~~g~y~C~~~n~ 263 (505)
.+++ |.|.|+|.|.+.
T Consensus 168 ~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 168 GPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EECC--SCEEEEEEEEET
T ss_pred CCcC--CCeeEEEEEEcC
Confidence 9887 999999999865
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=136.95 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=105.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--------------CEECcCCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--------------GELLNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--------------~~~l~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+ +.+.+.|+|. +...... ...+|+.+. ..+|.|.+++ .+|+
T Consensus 14 v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~sL~I~~v~-~~D~ 87 (240)
T 3q5y_A 14 KEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKG----FLPSRFSVQQFDDYHSEMNMSALE-LEDS 87 (240)
T ss_dssp EETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEEC----SCCTTEEEEECTTSCEEEEECSCC-GGGC
T ss_pred ecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCc----ccCCeEEEEeCCCCEEEEEECcCC-hhHC
Confidence 358999999999976 7789999992 1111100 123566553 2479999999 9999
Q ss_pred eEEEEEEEcc--cC-ceEeeEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEec
Q psy14886 62 AMYQCRAKNQ--LK-TRYSSAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIG 131 (505)
Q Consensus 62 G~Y~C~~~~~--~~-~~~~~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~ 131 (505)
|.|+|.+.+. .. .....+.|.|.. .+|.+.... +....+.+|+.++|.|.+.+ .|.+ .+.|+++|..+.
T Consensus 88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~ 166 (240)
T 3q5y_A 88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFE-PSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVH 166 (240)
T ss_dssp EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeC-CchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECc
Confidence 9999999732 11 222345677763 233332211 12223456899999999988 5655 899999999886
Q ss_pred CCCcE----EEeeCC------CEEEcCCCCCC-CEEEEEEEEcCCCc
Q psy14886 132 SGGRR----KIFENG------NLLISPVSRDD-SGIYSCTATNVHGM 167 (505)
Q Consensus 132 ~~~~~----~~~~~~------~l~i~~v~~~d-~G~y~C~~~~~~g~ 167 (505)
..... ....++ .|.|..+...| +|.|+|.|.|....
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 167 SGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp TTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 53221 112233 37888888888 77999999986543
|
| >1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=133.29 Aligned_cols=195 Identities=15% Similarity=0.122 Sum_probs=130.3
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCc--eeeEE-eeeccCCce
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR--KEASI-ENVLVPWST 356 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~-~~~L~~~~~ 356 (505)
..|.++.+.......+.++|+++.+.+.....|.+.|+..+ ..|..+..... ..+... ....+ ..++..+..
T Consensus 22 ~~P~nl~C~~~~~~~l~C~W~~~~~~~~~~~~y~l~y~~~~-~~~~~C~~~~~----~~~~~~~~~~C~~~~~~~~~~~~ 96 (227)
T 1eer_B 22 RGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLED-EPWKLCRLHQA----PTARGAVRFWCSLPTADTSSFVP 96 (227)
T ss_dssp HSTTSCEEEBSSSSCCEEEEEESCCSSCCTTSEEEEEEETT-SCCEEECEEEE----EETTTEEEEEEECCGGGCCBSSC
T ss_pred cCCcCCeEECCCCCEEEEEecCCCCCCCCCccEEEEEEcCC-CCceeccceec----cCCCCCceEEEEeCCCcceeeEE
Confidence 35788999888889999999998765545688999998763 33555421100 000011 11111 113677889
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccc-cccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcE
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGK-IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ 435 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~-~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~ 435 (505)
|.|+|.|.|..+.. . ..+.+....++.||.++++.... .+.+.|+|++|...+.++ ++.|.|+|+..+...|.
T Consensus 97 y~~~V~a~~~~~~~--~---~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~-~l~Yev~y~~~~~~~w~ 170 (227)
T 1eer_B 97 LELRVTAASGAPRY--H---RVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTS-HIRYEVDVSAGQGAGSV 170 (227)
T ss_dssp EEEEEEETTSCEEE--E---EEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGG-GEEEEEEEECCSSSCCC
T ss_pred EEEEEEecCCCccE--E---EEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCccccc-ceEEEEEEEcCCCCCcE
Confidence 99999998754321 1 13444555677899999998764 789999999954433333 88999999987766675
Q ss_pred EEEeeecCceeeEEEEcCCccceeeEEEEEEEecC----CCC-CCCCceEEEeecceEE
Q psy14886 436 SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND----VGP-GPESEVVTIWHDPLVI 489 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~----~G~-g~~s~~~~~~t~p~~~ 489 (505)
..... .. ..+.+.|.+|.|++.|.|+|+|.+. .|. |++|+.+.+.| |..+
T Consensus 171 ~~~~~-~~--~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t-~~d~ 225 (227)
T 1eer_B 171 QRVEI-LE--GRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLT-PSDL 225 (227)
T ss_dssp CEEEE-CT--TCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC-----
T ss_pred EEEEE-ec--CceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEEC-cccC
Confidence 42111 11 2356788999999999999999975 243 89999998888 5443
|
| >2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=122.79 Aligned_cols=111 Identities=19% Similarity=0.328 Sum_probs=91.4
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCc
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGN 444 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~ 444 (505)
|.|++|... .+.|.+..|+.+|.++++...+.++|.|.|++ +.+.++.|++|.|+|+..+.. .|.....
T Consensus 1 G~g~~S~~~-~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~----- 72 (121)
T 2dlh_A 1 GSSGSSGPV-LTQTSEQAPSSAPRDVQARMLSSTTILVQWKE--PEEPNGQIQGYRVYYTMDPTQHVNNWMKHNV----- 72 (121)
T ss_dssp CCCCCCSSS-CSCCCCCCCCSCCEEEEECCCSSSBCCEEEEC--CSCCCSCEEEEEEECCSCTTSCTTTSCCCCC-----
T ss_pred CCCCCCCCE-EEECCCcCCCCCCcccEEEecCCCEEEEEECC--CCCCCCcEeEEEEEEEeCCCCCccccEEEec-----
Confidence 667777775 77888888988999999988899999999998 467888999999999976532 2332111
Q ss_pred eeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 445 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 445 ~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.....+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 73 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 114 (121)
T 2dlh_A 73 ADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQT 114 (121)
T ss_dssp SSCSEECCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred CCceEEEecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECCC
Confidence 134578999999999999999999999999999999998864
|
| >1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=121.97 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=87.4
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCc--------EEEEeeecCceeeEE
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF--------QSETLKEYGNVGIAV 449 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~--------~~~~~~~~~~~~~~~ 449 (505)
.+.|.+..|+.+|.++++...+.++|.|.|++|+....+|.|++|+|+|+..+...+ ...... . ..+.
T Consensus 6 ~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 81 (125)
T 1uen_A 6 SGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQ--G--SKTH 81 (125)
T ss_dssp CCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEE--S--SCSE
T ss_pred EEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEec--C--CccE
Confidence 678888999899999999888899999999996667789999999999998774332 112221 1 3457
Q ss_pred EEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 450 VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 450 ~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 82 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 118 (125)
T 1uen_A 82 GMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118 (125)
T ss_dssp EEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECCC
T ss_pred EEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECCC
Confidence 8899999999999999999999999999999998864
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=134.74 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=115.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCE-----Eec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-----IIG---------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~-----~~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.+.+.|.+.+.|++++. .+. ...++....++ +|.|.+++.+|+|.|.|
T Consensus 20 ~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C 99 (276)
T 3auv_A 20 SSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYC 99 (276)
T ss_dssp SEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEE
Confidence 45678999999999999998888999998531 121 12355444333 69999999999999999
Q ss_pred EEEcCCCce-eeeEEEEEEeCC-------------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCC--EEe
Q psy14886 160 TATNVHGMD-ESKGRLIVLHGP-------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG--VRI 223 (505)
Q Consensus 160 ~~~~~~g~~-~~~~~l~v~~~p-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~--~~~ 223 (505)
.+.|..+.. ...+.|.|...| ......+....+..|+.++|.|.+.+.+.+...+.|++++ ...
T Consensus 100 ~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~ 179 (276)
T 3auv_A 100 QQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCL 179 (276)
T ss_dssp EECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCE
T ss_pred EEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCc
Confidence 999875542 223566665542 2222223466788999999999998876434577898852 111
Q ss_pred ---c---CC------CCCcccCCeeee----cCCeEEEecCCCCCCEEEEEEEEecC---Cc--EEEEEEEEEcCCC
Q psy14886 224 ---G---NM------DLNELETPNINI----DGGLLEITNASFADAGEYECVVKSTV---GK--ISTKTTVIVEGPP 279 (505)
Q Consensus 224 ---~---~~------~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~n~~---g~--~~~~~~l~v~~~p 279 (505)
. .. ............ ....|.|.++..+|+|.|.|.|.|.. +. ......|.|...+
T Consensus 180 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~ 256 (276)
T 3auv_A 180 EWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSAS 256 (276)
T ss_dssp EEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred EEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence 0 00 000000111111 12379999999999999999999973 21 1233556665433
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=135.70 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=111.8
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---ec----------------CCCcEEEeeC-----CCEEEcCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---IG----------------SGGRRKIFEN-----GNLLISPVS 150 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~~----------------~~~~~~~~~~-----~~l~i~~v~ 150 (505)
..+.+|++++|.|.+.+.+ .+.+.|+++ +.. +. ...++.+..+ .+|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 89 (222)
T 1q9r_B 10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR 89 (222)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred eeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence 4588999999999998765 679999984 221 10 1235555432 269999999
Q ss_pred CCCCEEEEEEEEcCCC-----ceeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeCC
Q psy14886 151 RDDSGIYSCTATNVHG-----MDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNG 220 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~ 220 (505)
.+|+|.|.|.+.+..+ .......|.|.. +|.+.... ....+..|+.+.|.|.+.+. |.| +.+.|+++|
T Consensus 90 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~g 167 (222)
T 1q9r_B 90 AEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLA-PGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGS 167 (222)
T ss_dssp GGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEEC-CCSCCCCSSEEEEEEEEEEEBSSC-CEEEEGGGT
T ss_pred cccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcc-ccccccCCCcEEEEEEEccEECCC-CEEEEecCC
Confidence 9999999999998654 222345677754 23333222 22234578999999999986 543 477899987
Q ss_pred EEecCCCCCc-ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEE
Q psy14886 221 VRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 273 (505)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l 273 (505)
..+....... .... .....+.|.|.....+| |.|+|.|.|..|.......+
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 168 LSSGVHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp BCTTEEEEEEEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred eEcceEeccccccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 6542210000 0001 11223468888888888 99999999999876554443
|
| >4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=123.59 Aligned_cols=191 Identities=13% Similarity=0.049 Sum_probs=131.5
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeec-cCCceeEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL-VPWSTYEF 359 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~~y~~ 359 (505)
+|.++++....... .|+|+++.........|.|+|+..+...|.....-.. ......-+...+ .....|.+
T Consensus 11 ~P~nv~~~s~n~~~-iL~W~p~~~~~~~~~~Y~Vqy~~~~~~~W~~~~~C~~-------~~~~~Cdlt~~~~~~~~~Y~~ 82 (221)
T 4doh_R 11 KPANITFLSINMKN-VLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRN-------INRTYCDLSAETSDYEHQYYA 82 (221)
T ss_dssp CCEEEEEEEETTEE-EEEEECCCCSSCCCCEEEEEEEETTSCCCEECGGGSS-------BSSSEEECTTTTCCSSCCEEE
T ss_pred CCceeEEEEECCcE-EEEEcCCCCCCCCCeEEEEEEEECCCCCceecccccC-------CCCCEEeCCCccccCCCCEEE
Confidence 57788887766666 4999987654466789999999877788987432111 112222233211 34568999
Q ss_pred EEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccc--cCC---------CCceEEEEEEE
Q psy14886 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREK--QNA---------PNIYYKIFWRK 428 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~--~~~---------~i~~Y~v~~~~ 428 (505)
||+|.+..+.+.++... .+.+......+||. +.+. ...++|.|.|.+|.... .+| ....|+|.|++
T Consensus 83 RV~A~~g~~~S~w~~~~-~F~p~~~t~igPP~-v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~ 159 (221)
T 4doh_R 83 RVRAIWGTKCSKWAESG-RFYPFLETQIGPPE-VALT-TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLN 159 (221)
T ss_dssp EEEEESSSCBCCCEECC-CBCHHHHCBCCCCE-EEEE-CCSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEE
T ss_pred EEEEEcCCcccCCEecC-ceechhhCccCCCE-EEEE-ECCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEE
Confidence 99999988777765432 44444455667786 7776 56789999999854321 223 15699999999
Q ss_pred cCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC--CCCCCCCceEEEeecceE
Q psy14886 429 KNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND--VGPGPESEVVTIWHDPLV 488 (505)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~--~G~g~~s~~~~~~t~p~~ 488 (505)
.+....... .. ....+.|.+|.|++.|.|+|+|... .|.|.+|+...+.|.+.+
T Consensus 160 ~~~~~~~~~--~~----~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~d~ 215 (221)
T 4doh_R 160 TKSNRTWSQ--CV----TNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQ 215 (221)
T ss_dssp TTTTEEEEE--EE----CSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECCCC-
T ss_pred CCCCcEEEE--ee----cCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecCCCc
Confidence 874432211 11 2246789999999999999999975 799999999999887654
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=132.63 Aligned_cols=176 Identities=16% Similarity=0.203 Sum_probs=114.1
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEECC--EEe-----------------cCCCcEEEeeC-----CCEEEcCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--NII-----------------GSGGRRKIFEN-----GNLLISPVSRD 152 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~~~-----------------~~~~~~~~~~~-----~~l~i~~v~~~ 152 (505)
..+.+|++++|.|.+.+.| .+.+.|+++. ..+ ....++.+..+ .+|.|.+++.+
T Consensus 12 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 91 (247)
T 2ghw_B 12 GVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE 91 (247)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHH
Confidence 5688999999999998876 5789999832 111 11245555432 25999999999
Q ss_pred CCEEEEEEEEcCCCc--eeeeEEEEEEeC--------------CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEE
Q psy14886 153 DSGIYSCTATNVHGM--DESKGRLIVLHG--------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 216 (505)
Q Consensus 153 d~G~y~C~~~~~~g~--~~~~~~l~v~~~--------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w 216 (505)
|+|.|+|.+.+..+. ....+.|.|... +..+...+....+..|+.+.|.|.+.+.+.+ .+.|
T Consensus 92 D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W 169 (247)
T 2ghw_B 92 DTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS--NLAW 169 (247)
T ss_dssp GCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT--CEEE
T ss_pred HCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc--eEEE
Confidence 999999999987322 222356777643 2222333455678899999999999988766 4669
Q ss_pred Ee--CCEEecC-----CCCCcccCCeee----ecCCeEEEecCCCCCCEEEEEEEEecCCcE-EEEEEEEEc
Q psy14886 217 TH--NGVRIGN-----MDLNELETPNIN----IDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVE 276 (505)
Q Consensus 217 ~~--~~~~~~~-----~~~~~~~~~~~~----~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l~v~ 276 (505)
++ ++..+.. ..........+. .....|.|.++..+|+|.|.|.|.|..+.. .....|.|.
T Consensus 170 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 170 YQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 88 4433210 000000001111 122469999999999999999998864432 233455554
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-16 Score=140.59 Aligned_cols=161 Identities=17% Similarity=0.271 Sum_probs=104.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--CCEEC------------cCCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--NGELL------------NSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--~~~~l------------~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+. .+.+.+.|+| .+..+ .... ...+|+.+. +.+|.|.+++ .+|+
T Consensus 38 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~R~~~~~~~~~~~sL~I~~v~-~~D~ 112 (268)
T 3pl6_D 38 TEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSG---LPNDRFFAVRPEGSVSTLKIQRTE-RGDS 112 (268)
T ss_dssp EETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTT---CCSTTEEEECTTSSSEEEEECSCC-GGGC
T ss_pred ecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCC---CccCcEEEEecCCCEEEEEECCCC-cccC
Confidence 35899999999986 5778999999 22211 1100 012566664 4579999999 9999
Q ss_pred eEEEEEEEcc--cCceEeeEEEEEEec-----CCCccCCCCCceEEeeCCCeEEEEeecCCCCC-C-eEEEEECCEEecC
Q psy14886 62 AMYQCRAKNQ--LKTRYSSAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-P-KFVWKKDGNIIGS 132 (505)
Q Consensus 62 G~Y~C~~~~~--~~~~~~~~~l~v~~~-----~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~-~i~W~~~g~~~~~ 132 (505)
|.|+|.+.+. .........|.|... +|.+.... +....+.+|+.++|.|.+.+.++ + .+.|+++|..+..
T Consensus 113 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~ 191 (268)
T 3pl6_D 113 AVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 191 (268)
T ss_dssp EEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECT
T ss_pred EEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeC-CCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCC
Confidence 9999999874 222233456777641 23222211 11222456899999999988644 4 8999999988854
Q ss_pred CCcEEE--------eeCC------CEEEcCCCCCC-CEEEEEEEEcCCCc
Q psy14886 133 GGRRKI--------FENG------NLLISPVSRDD-SGIYSCTATNVHGM 167 (505)
Q Consensus 133 ~~~~~~--------~~~~------~l~i~~v~~~d-~G~y~C~~~~~~g~ 167 (505)
+..... ..++ .|.|......| +|.|+|.|.+....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 192 GVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp TEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 321110 0122 36666766666 99999999986543
|
| >1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=116.67 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=84.6
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.+.+.... |.+|.++.+.....++|.|.|+++. .+.++.|++|+|+|+..+...|....... ...+.+.|.+|.|
T Consensus 10 ~~~t~~~~-P~~P~~l~~~~~~~~sv~l~W~~p~-~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p 84 (120)
T 1x5f_A 10 APATTGPL-PSAPRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIARERVENTSH---PGEMQVTIQNLMP 84 (120)
T ss_dssp CCCCCCCC-CCCCEEEEEEEECSSCEEEEEECCS-SCSSCCSSEEEEEEEETTCCCCEEEECSS---TTCSEEEECSCCT
T ss_pred EecCCCCC-CCCCCCcEEEecCCCEEEEEECCCC-CCCCCcEEEEEEEEEECCCCCceEEEecc---CCccEEEeCCCCC
Confidence 44454444 4799999999888999999999843 37888999999999998766666443322 2346789999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 85 ~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 113 (120)
T 1x5f_A 85 ATVYIFRVMAQNKHGSGESSAPLRVETQP 113 (120)
T ss_dssp TCEEEEEEEEECSSCEEEECCCEEEECCC
T ss_pred CCEEEEEEEEECCCccCCCCCCEEEEeCC
Confidence 99999999999999999999999998864
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=131.33 Aligned_cols=178 Identities=15% Similarity=0.212 Sum_probs=117.1
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEec-----------------CCCcEEEeeC-----CCEEEcCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG-----------------SGGRRKIFEN-----GNLLISPVSR 151 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~~-----------------~~~~~~~~~~-----~~l~i~~v~~ 151 (505)
...+.+|++++|.|.+.+.| .+.+.|+++ +..+. ...++.+..+ .+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (256)
T 1nqb_A 9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS 88 (256)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence 35789999999999998875 579999983 22210 1245555432 2699999999
Q ss_pred CCCEEEEEEEEcCCCc-----eeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCC---eEEEEEe--CCE
Q psy14886 152 DDSGIYSCTATNVHGM-----DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD---VAYIWTH--NGV 221 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~-----~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~---~~~~w~~--~~~ 221 (505)
+|+|.|.|.+.+..|. ....+.|.|...|.+. ..+....+..|+.++|.|.+.+.+.+. ..+.|++ ++.
T Consensus 89 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~ 167 (256)
T 1nqb_A 89 EDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT-QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ 167 (256)
T ss_dssp GGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE-EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred hhCEEEEEEEeeccCccceeEEcCceeeeecccccEE-ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence 9999999999988652 1223567776555433 335566788999999999998876541 3567988 454
Q ss_pred EecC----CC-CCcccCCee----eecCCeEEEecCCCCCCEEEEEEEEecCCc-EEEEEEEEEc
Q psy14886 222 RIGN----MD-LNELETPNI----NIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVE 276 (505)
Q Consensus 222 ~~~~----~~-~~~~~~~~~----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~~~~l~v~ 276 (505)
.+.. .. .......++ ......|.|.++..+|+|.|+|.|.+..+. ......|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 168 SPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp CEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 3210 00 000000111 112347999999999999999999885433 2233456664
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=133.70 Aligned_cols=169 Identities=19% Similarity=0.239 Sum_probs=111.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE------------ecCC----CcEEEee----CCCEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI------------IGSG----GRRKIFE----NGNLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~------------~~~~----~~~~~~~----~~~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|.+. .+.+.+.|++ .+.. .... .++.+.. +.+|.|.+++.+|+
T Consensus 34 ~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~ 112 (268)
T 3pl6_D 34 SNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDS 112 (268)
T ss_dssp SEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGC
T ss_pred CEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccC
Confidence 557799999999999986 5677999998 2211 1111 4555543 33599999999999
Q ss_pred EEEEEEEEcC--CCceeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 155 GIYSCTATNV--HGMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 155 G~y~C~~~~~--~g~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
|.|.|.+.+. .........|.|.. +|.+....+....+..|+.++|.|.+.+.+++.+.+.|+++|..+...
T Consensus 113 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~ 192 (268)
T 3pl6_D 113 AVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 192 (268)
T ss_dssp EEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTT
T ss_pred EEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCC
Confidence 9999999974 23333345677765 333333333333445689999999999977666688999999887543
Q ss_pred CCCcc--------cCCeeeecCCeEEEecCCCCC-CEEEEEEEEecCCc
Q psy14886 227 DLNEL--------ETPNINIDGGLLEITNASFAD-AGEYECVVKSTVGK 266 (505)
Q Consensus 227 ~~~~~--------~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~ 266 (505)
..... .........+.|.+.....+| .|.|+|.|.|....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 193 VCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred eEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 11000 001111112356676666666 99999999987554
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=135.98 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=113.3
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCC-----cee
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR----KIFENGNLLISPVSRDDSGIYSCTATNVHG-----MDE 169 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g-----~~~ 169 (505)
..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... ....++.|.|.+++.+|+|.|+|.+.+... ..+
T Consensus 16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S 94 (257)
T 1b6u_A 16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS 94 (257)
T ss_dssp SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence 46889999999999875 46799999988644211000 001234699999999999999999986432 223
Q ss_pred eeEEEEEEeC--CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEec
Q psy14886 170 SKGRLIVLHG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247 (505)
Q Consensus 170 ~~~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 247 (505)
..+.|.|... ++.+...+ ...+..|+.++|.|.+.+.+ ..+.|+++|..+....... ..........|.|.+
T Consensus 95 ~~~~L~V~~~~~~P~l~~~p-~~~V~~G~~vtL~C~~~~~~---~~~~w~k~g~~~~~~~~~~--~~~~~~~~~~l~I~~ 168 (257)
T 1b6u_A 95 DPLDIVITGLYEKPSLSAQP-GPTVLAGESVTLSCSSRSSY---DMYHLSREGEAHERRFSAG--PKVNGTFQADFPLGP 168 (257)
T ss_dssp CCEEEEEECSSCCCEEECSS-CTTCBTTCEEEEEEECSSCC---SEEEEEETTSSCEECCBCB--CCSSSCCBEEEEEEE
T ss_pred CCEEEecccCCCCcceEccC-CCccCCCCEEEEEEeCCCCC---cEEEEEECCcccCcccccc--cccCCceeEEEEecc
Confidence 4467777653 22222222 23578999999999987653 3678999986654321000 000001246789999
Q ss_pred CCCCCCEEEEEEEEecCC-----cEEEEEEEEEcCCCC
Q psy14886 248 ASFADAGEYECVVKSTVG-----KISTKTTVIVEGPPG 280 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g-----~~~~~~~l~v~~~p~ 280 (505)
++ |.|.|+|.+.+... ..+..+.|.|.++|.
T Consensus 169 v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 169 AT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp CC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred cc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 87 99999999987532 234567777777654
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=133.30 Aligned_cols=168 Identities=14% Similarity=0.251 Sum_probs=108.8
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEec----------------CCCcEEEeeC-----CCEEEcCCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNIIG----------------SGGRRKIFEN-----GNLLISPVSRDD 153 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~~----------------~~~~~~~~~~-----~~l~i~~v~~~d 153 (505)
..+.+|++++|.|.+.+.+ .+.+.|+++ +.... ...++.+..+ .+|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 89 (210)
T 3d9a_H 10 SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED 89 (210)
T ss_dssp SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCccc
Confidence 4688999999999998875 479999984 32210 1245554431 279999999999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCEEecCCCC
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDL 228 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~~~~~~~~ 228 (505)
+|.|.|.+.+.. .......|.|.. +|.+... +....+..|+.+.|.|.+.+. |.| +.+.|++++..+.....
T Consensus 90 ~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~~~~~~~~ 166 (210)
T 3d9a_H 90 TATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEP-VTVTWNSGSLSSGVHTF 166 (210)
T ss_dssp CEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEE-CCTTSCCCSSEEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEEC
T ss_pred CEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEe-cCCcccccCCcEEEEEEEeeEecCC-cEEEEeeCCcccceEEc
Confidence 999999998863 222235666653 2333322 222345678999999999987 443 47789998765321100
Q ss_pred CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE
Q psy14886 229 NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270 (505)
Q Consensus 229 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 270 (505)
............+.|.|.....++ |.|+|.|.|..|.....
T Consensus 167 ~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 167 PAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp CCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 000000111123468888887766 99999999998875433
|
| >1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-16 Score=117.76 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=84.3
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
.+......+|.+|.++.+...+.++|.|.|++ +.+++++|++|.|+|+..+ ...|......... ..+.+.|.+|.
T Consensus 9 ~~~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p--~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~--~~~~~~v~~L~ 84 (121)
T 1x4z_A 9 QPDHGRLSPPEAPDRPTISTASETSVYVTWIP--RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP--SRLSVEITGLE 84 (121)
T ss_dssp CCCSSSCCCCCCCCCCEEEECCSSEEEEECCC--CCCTTSCCCEEEEEEEESSSCCCCEEEEEEECT--TCCEEEEESCC
T ss_pred eeccCcCCCCccCCCCEEEEccCCEEEEEEEC--CCCCCCcceEEEEEEEECCCCCceEEeecccCC--CcCEEEECCCC
Confidence 34444556778999999988899999999996 6778889999999999987 6888865443222 34678899999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|++.|.|||+|+|.+|.|++|+.....+.
T Consensus 85 p~t~Y~frV~A~n~~G~s~~S~~~~~v~~ 113 (121)
T 1x4z_A 85 KGISYKFRVRALNMLGESEPSAPSRPYVV 113 (121)
T ss_dssp TTCEEEEEEEEEETTEECCCCCCCCCEEC
T ss_pred CCCEEEEEEEEEcCCCcCCCcCCCCCEEc
Confidence 99999999999999999999988764443
|
| >2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=117.47 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=81.8
Q ss_pred CCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
|.+..| .+|.++++...+.++|.|.|++ +.+.+|.|++|+|+|+..+...|....... ..+.+.|.+|.|++.
T Consensus 3 T~~~~P-~~P~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~l~~L~p~t~ 75 (108)
T 2djs_A 3 SGSSGP-STVPIMHQVSATMRSITLSWPQ--PEQPNGIILDYEIRYYEKEHNEFNSSMARS----QTNTARIDGLRPGMV 75 (108)
T ss_dssp SCCCCC-CCCSCCEEEEECSSEEEEECCC--CSCCSSCEEEEEEEEEETTSCSTTCEEEEE----SSSEEEEESCCTTCE
T ss_pred cCCCCC-CCCcceEEEecCCCEEEEEECC--CCCCCCeEEEEEEEEEECCCCCcceeEEec----CccEEEEcCCCCCCE
Confidence 334444 5788999988889999999998 467888999999999998765554333322 346788999999999
Q ss_pred EEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 461 YEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 461 Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|.|+|+|+|.+|.|++|+.+.+.|.+.
T Consensus 76 Y~~~V~A~n~~G~g~~S~~~~~~T~~~ 102 (108)
T 2djs_A 76 YVVQVRARTVAGYGKFSGKMCFQTLTD 102 (108)
T ss_dssp EEEEEEEEESSCEEEECCCEEEECCCS
T ss_pred EEEEEEEEeCCEECCCCCCEEEEeCCC
Confidence 999999999999999999999988754
|
| >2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=116.28 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=81.3
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCc----eEEEEEEEcCC--CCcEEEEeeecCceeeEEEE
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI----YYKIFWRKKND--TEFQSETLKEYGNVGIAVVR 451 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~----~Y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 451 (505)
.+.+.+..|+.+|.++++...+.++|.|.|+++ ...++.+. +|+|+|+..+. ..|..... ..+.+.
T Consensus 10 ~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~~p--~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~~~~------~~~~~~ 81 (123)
T 2edd_A 10 TSVPDLSTPMLPPVGVQAVALTHDAVRVSWADN--SVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDT------TSLSYT 81 (123)
T ss_dssp CSCSSCCCSSCCCEEEEEEEEETTEEEEEEECS--SSCSSCCCSCCCCEEEEEEETTCTTCCCCCEEE------SSSEEE
T ss_pred cCCCccCCCCCCCcceEEEEcCCCeEEEEecCC--CCCcccccCcCceEEEEEEECCCCCccEEEEeC------CceEEE
Confidence 345566788899999999999999999999973 34455554 99999998752 23332211 246789
Q ss_pred cCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 452 IPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 452 l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|.+|+|++.|.|+|+|+|.+|.|++|+.+.++|.+.
T Consensus 82 v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~~~ 117 (123)
T 2edd_A 82 ATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA 117 (123)
T ss_dssp EESCCTTCEEEEEEEECCSSSCCCCCCCEEEECCCS
T ss_pred ecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEccCC
Confidence 999999999999999999999999999999998764
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=131.47 Aligned_cols=166 Identities=17% Similarity=0.258 Sum_probs=108.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC-----EEe---------cCCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-----NII---------GSGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g-----~~~---------~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.+.+.|.+.+.|+++. ..+ ....++.....+ +|.|.+++.+|+|.|.|
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 91 (250)
T 3esu_F 12 SSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFC 91 (250)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEE
Confidence 5567899999999999999998999999842 111 012344333322 69999999999999999
Q ss_pred EEEcCCCceee-eEEEEEEeC------------------CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC-
Q psy14886 160 TATNVHGMDES-KGRLIVLHG------------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN- 219 (505)
Q Consensus 160 ~~~~~~g~~~~-~~~l~v~~~------------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~- 219 (505)
.+.+..+.... ...|.|... +......+....+..|+.+.|.|.+.+.+.+...+.|+++
T Consensus 92 ~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~ 171 (250)
T 3esu_F 92 QQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQR 171 (250)
T ss_dssp EECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEEC
T ss_pred EEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEEC
Confidence 99987654332 355666543 1222233455678899999999999887644557789886
Q ss_pred -CEEecCC------C------CCcccCCeee----ecCCeEEEecCCCCCCEEEEEEEEe
Q psy14886 220 -GVRIGNM------D------LNELETPNIN----IDGGLLEITNASFADAGEYECVVKS 262 (505)
Q Consensus 220 -~~~~~~~------~------~~~~~~~~~~----~~~~~l~i~~~~~~~~g~y~C~~~n 262 (505)
+..+... . .......... ....+|.|.++..+|+|.|.|.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 172 PGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp TTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 3222100 0 0000001111 1123699999999999999999987
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=130.71 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=111.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--------------CCEEecC----CCcEEEeeCC----CEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--------------DGNIIGS----GGRRKIFENG----NLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--------------~g~~~~~----~~~~~~~~~~----~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.| ..+.+.+.+.|++ ++..... ..++.+...+ +|.|.+++.+|+
T Consensus 10 ~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 88 (245)
T 4ei6_B 10 SHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDS 88 (245)
T ss_dssp SEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGC
T ss_pred ceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHC
Confidence 456789999999999 5567788999998 2222211 1455554322 699999999999
Q ss_pred EEEEEEEEcCC----CceeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEec
Q psy14886 155 GIYSCTATNVH----GMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224 (505)
Q Consensus 155 G~y~C~~~~~~----g~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~ 224 (505)
|.|.|.+.+.. ........|.|.. +|.+....+....+..|+.+.|.|.+.+.+++.+.+.|+++|..+.
T Consensus 89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~ 168 (245)
T 4ei6_B 89 AVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 168 (245)
T ss_dssp EEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred EEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECC
Confidence 99999999532 2233345677763 3433333333334456899999999998655556889999998886
Q ss_pred CCCCCccc--------CCeeeecCCeEEEecCCCCC-CEEEEEEEEecCCc
Q psy14886 225 NMDLNELE--------TPNINIDGGLLEITNASFAD-AGEYECVVKSTVGK 266 (505)
Q Consensus 225 ~~~~~~~~--------~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~ 266 (505)
........ ........+.|.|.....+| .|.|+|.|.|....
T Consensus 169 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 169 SGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp TTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 53211000 00111112347777776667 89999999986554
|
| >1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=117.72 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=85.1
Q ss_pred cCCCcCCCCCCCCCccCCCC-----CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEe
Q psy14886 365 NELGYGEPSSPSPQYNTPAD-----KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 439 (505)
Q Consensus 365 n~~G~~~~s~~~~~~~t~~~-----~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~ 439 (505)
+..|.|++|.+. .+.|.+. .+|.+|.++++.... ++|.|.|++ +.+.+|.|++|+|+|+. +...+....+
T Consensus 2 t~~G~g~~S~~~-~~~T~~~~~~~~~~P~~P~~l~~~~~~-~sv~l~W~~--P~~~~g~i~~Y~v~y~~-~~~~~~~~~~ 76 (126)
T 1x5i_A 2 SSGSSGPATDWL-SAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTP--PENQNIVVRGYAIGYGI-GSPHAQTIKV 76 (126)
T ss_dssp CSCCCCCCCCCC-CSCCCCTTSBCSSCCCSCSEEEEEEET-TEEEEEEEC--CSCTTBCCCEEEEEECS-SCGGGEEEEC
T ss_pred CCCccCCCCCCE-EeECccccCccCCCCCCCCeeEEEecC-CEEEEEEcC--CCCCCCCEeEEEEEEEc-CCCCceEEEe
Confidence 467889888875 6777765 244599999998776 999999998 45678999999999984 4334443333
Q ss_pred eecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 440 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 440 ~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
. ...+.+.|.+|.|++.|.|+|+|+|.+|.|+++.....
T Consensus 77 ~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~ 115 (126)
T 1x5i_A 77 D----YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 115 (126)
T ss_dssp C----TTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCCEE
T ss_pred C----CCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeEEe
Confidence 2 24467899999999999999999999999999976443
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=136.11 Aligned_cols=171 Identities=17% Similarity=0.207 Sum_probs=110.6
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EEC---cC-CC-----CCCC-CCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--ELL---NS-ET-----LPLE-DQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~l---~~-~~-----~~~~-~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+. +...+.|+|++ ..+ .. .. .... ..+|+.+. ..+|.|.+++ .+|
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D 91 (242)
T 1hxm_B 13 KTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE-KQD 91 (242)
T ss_dssp EETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCC-ccc
Confidence 3589999999999875 56889999943 211 00 00 0000 34677653 3479999999 999
Q ss_pred CeEEEEEEEcccC-c-----e-EeeEEEEEEec------CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEE
Q psy14886 61 PAMYQCRAKNQLK-T-----R-YSSAQLRVLTL------KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKK 125 (505)
Q Consensus 61 ~G~Y~C~~~~~~~-~-----~-~~~~~l~v~~~------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~ 125 (505)
+|.|.|.+.+... . . ...+.|.|... +|...+.. +....+.+|+.++|.|.+.+. |. +.+.|++
T Consensus 92 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 170 (242)
T 1hxm_B 92 IATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFFPDVIKIHWEE 170 (242)
T ss_dssp CEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEESSCCEEEEEEE
T ss_pred CEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEECCCeEEEEEc
Confidence 9999999987531 1 1 12467777752 23333322 122235679999999999876 64 6999999
Q ss_pred CCE-EecCCC--cEEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 126 DGN-IIGSGG--RRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 126 ~g~-~~~~~~--~~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++. .+.... ... ..+ ..|.|.++.. | |.|+|.|.|..+.......+.+
T Consensus 171 ~~~~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 171 KKSNTILGSQEGNTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp SSSCCCCCCEECCCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCCEeecCcccccee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 986 453211 111 112 2478877765 4 9999999998887655555544
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=135.64 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=115.2
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CE---Eec-------------CCCcEEEeeC-----CCEEEcCCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GN---IIG-------------SGGRRKIFEN-----GNLLISPVSRDD 153 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~---~~~-------------~~~~~~~~~~-----~~l~i~~v~~~d 153 (505)
..+.+|++++|.|.+.+.| .+.+.|+++ +. .+. ...++.+..+ .+|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (257)
T 1f3r_B 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (257)
T ss_dssp SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence 3588999999999998875 679999985 21 110 1245555432 269999999999
Q ss_pred CEEEEEEEEcCCC-------ce--eeeEEEEEEeCC--------------eeeeeCCCceEEEeeccEEEEEEeeecCCC
Q psy14886 154 SGIYSCTATNVHG-------MD--ESKGRLIVLHGP--------------SYYEQLPPKITIAAHRNLQLRCSAHTEELL 210 (505)
Q Consensus 154 ~G~y~C~~~~~~g-------~~--~~~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 210 (505)
+|.|.|.|.+..| .. ...+.|.|...+ ..+...+....+..|+.++|.|.+.+.+.+
T Consensus 90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 169 (257)
T 1f3r_B 90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN 169 (257)
T ss_dssp CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence 9999999999854 11 123567776543 112223445567889999999999887765
Q ss_pred CeEEEEEe--CCEEecC----CC-CCcccCCee----eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCC
Q psy14886 211 DVAYIWTH--NGVRIGN----MD-LNELETPNI----NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 211 ~~~~~w~~--~~~~~~~----~~-~~~~~~~~~----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p 279 (505)
.+.|++ ++..+.. .. ........+ ......|.|.++..+|+|.|.|.|.|..........|.|...+
T Consensus 170 --~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~ 247 (257)
T 1f3r_B 170 --YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAE 247 (257)
T ss_dssp --CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSC
T ss_pred --cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCCC
Confidence 466988 4432210 00 000000111 1123479999999999999999999865112223455565444
Q ss_pred C
Q psy14886 280 G 280 (505)
Q Consensus 280 ~ 280 (505)
.
T Consensus 248 ~ 248 (257)
T 1f3r_B 248 Q 248 (257)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=154.68 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=113.6
Q ss_pred CCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCC-----CCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 2 DNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPL-----EDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 2 ~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~-----~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+|++++|.|.+ .+.|.+.+.|+|++..+....... ...+|... .+++|.|.+++ .+|+|.|+|.+.|..+.
T Consensus 379 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~-~~D~G~Y~C~~~n~~~~ 457 (581)
T 3o3u_N 379 RIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVG-IQDEGIFRCQAMNRNGK 457 (581)
T ss_dssp ETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCC-GGGCEEEEEEEECTTSC
T ss_pred ecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccc-cccCeEEEEEEEcCCCc
Confidence 579999999999 678889999999876332110000 01234333 45689999999 99999999999998887
Q ss_pred e-EeeEEEEEEecCCCccCCCCCceEEeeCCC-eEEEEeecCC-CCCCeEEEEECCEEecCCC-cEEEe----e---C--
Q psy14886 75 R-YSSAQLRVLTLKPSFKKRPLESETYAGEGG-NVTIFCNPEA-APKPKFVWKKDGNIIGSGG-RRKIF----E---N-- 141 (505)
Q Consensus 75 ~-~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~-~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~-~~~~~----~---~-- 141 (505)
. ...+.|.|...+....+..... . +.+|+ .+.|.|.+.+ .|.+.++|+++|..+.... +..+. . .
T Consensus 458 ~~~~~~~l~V~~~~~~p~i~~~~~-~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~ 535 (581)
T 3o3u_N 458 ETKSNYRVRVYQIPGKPEIVDSAS-E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGL 535 (581)
T ss_dssp EEEEEEEEEEEBCCCCCEEESCCS-E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCC
T ss_pred eeEEEEEEEEEcCCCCCEEEcCCc-c-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCce
Confidence 6 5678888886333332222222 2 44554 4567999988 5889999999999886432 22221 1 1
Q ss_pred ----CCEEEcCCC-CCCCEEEEEEEEcCCCc
Q psy14886 142 ----GNLLISPVS-RDDSGIYSCTATNVHGM 167 (505)
Q Consensus 142 ----~~l~i~~v~-~~d~G~y~C~~~~~~g~ 167 (505)
.+|.|.++. .++.|.|+|.|.|....
T Consensus 536 y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 536 FTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 248999988 55588999999998643
|
| >1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=116.25 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=86.4
Q ss_pred CCCCCCCCccCC-CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEE
Q psy14886 371 EPSSPSPQYNTP-ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV 449 (505)
Q Consensus 371 ~~s~~~~~~~t~-~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (505)
++|... .+.|. +..++.+|.++.+...+.++|.|.|++ +...++.|++|+|+|+..+...|..... ..+.
T Consensus 2 ~~S~~~-~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~------~~~~ 72 (116)
T 1x5g_A 2 SSGSSG-RVETQPEVQLPGPAPNLRAYAASPTSITVTWET--PVSGNGEIQNYKLYYMEKGTDKEQDVDV------SSHS 72 (116)
T ss_dssp CCCCCC-CCSSCCCSSCCCCCSSCEEEEEETTEEEEECCC--CSCCSSCCSEEEEEEEETTCCCCCCEEE------CSSE
T ss_pred CCccCe-EEEcCCCCCCCcCCCccEEEecCCCEEEEEEeC--CCCCCCcccEEEEEEEECCCCccEEEec------CCce
Confidence 344443 56664 335567999999988889999999998 4457889999999999988666643322 2467
Q ss_pred EEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 450 VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 450 ~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.|.+|.|++.|.|+|+|+|..|.|++|+.+.++|.+
T Consensus 73 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 109 (116)
T 1x5g_A 73 YTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109 (116)
T ss_dssp EEECSCCTTCEEEEEEEEECSSCCCCBCCCCCEECCC
T ss_pred EEEcCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECCC
Confidence 8999999999999999999999999999999988864
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=135.86 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=112.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CC-eEEEEECC--EEe------------cCCCcEEEeeC---CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KP-KFVWKKDG--NII------------GSGGRRKIFEN---GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~-~i~W~~~g--~~~------------~~~~~~~~~~~---~~l~i~~v~~~d~G~y 157 (505)
....+.+|++++|.|.+.+.+ .+ .+.|++++ ..+ ....++..... .+|.|.+++.+|+|.|
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 106 (234)
T 2j6e_L 27 PSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADY 106 (234)
T ss_dssp SCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEE
T ss_pred CcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEE
Confidence 445688999999999998764 34 79999852 211 01234444322 2699999999999999
Q ss_pred EEEEEcCCCc---eeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC-
Q psy14886 158 SCTATNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN- 229 (505)
Q Consensus 158 ~C~~~~~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~- 229 (505)
+|.+.+..+. ....+.|.|.. +|.+....+ ......|+.+.|.|.+.+.+++.+.+.|+++|..+......
T Consensus 107 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~-~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 185 (234)
T 2j6e_L 107 YCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPP-SSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT 185 (234)
T ss_dssp EEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECC-CHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred EEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCC-ChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence 9999998772 22234555532 232222222 11223477999999999876544688899999987543110
Q ss_pred --cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE
Q psy14886 230 --ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270 (505)
Q Consensus 230 --~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 270 (505)
...........+.|.|.....+|.|.|+|.|.|..+....+
T Consensus 186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228 (234)
T ss_dssp CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence 00000111123467888888899999999999987764433
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=135.50 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=104.6
Q ss_pred eeCCCeEEEEeecCCCC----CCeEEEEECCEEecCCCc--------EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 101 AGEGGNVTIFCNPEAAP----KPKFVWKKDGNIIGSGGR--------RKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p----~~~i~W~~~g~~~~~~~~--------~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+.+|++++|.|.+.+.+ ...|.|++++..+..... ........|.|.+++.+|+|.|+|.|.+..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999998774 249999999977642110 011112359999999999999999999987754
Q ss_pred ee--eEEE--EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCC
Q psy14886 169 ES--KGRL--IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGG 241 (505)
Q Consensus 169 ~~--~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~ 241 (505)
.. .+.+ .+..+|.+........ ...|+.+.|.|.+.+.+++.+.+.|+++|..+....... ..... ....+
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~-~~~~s 172 (207)
T 2vol_A 95 PIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGS-YFVYS 172 (207)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSC-EEEEE
T ss_pred ceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCC-EEEEE
Confidence 22 2222 2333454433322222 224889999999998655556888999998774321000 00000 01112
Q ss_pred eEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 242 LLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 242 ~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.|.+...+.++.|.|+|.|.|....
T Consensus 173 ~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 173 KLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EEEECHHHcCCCCEEEEEEECCCCC
Confidence 3455555556789999999997653
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=138.97 Aligned_cols=170 Identities=19% Similarity=0.298 Sum_probs=107.5
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--E---EC---cCC----CCCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--E---LL---NSE----TLPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~---~l---~~~----~~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+. +...+.|+|.. . .+ ... .......+|+.+.. .+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 90 (253)
T 3liz_H 12 VQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK-SED 90 (253)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC-hhh
Confidence 4689999999999763 35789999942 1 11 000 00011235665531 349999999 999
Q ss_pred CeEEEEEEEccc----CceEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEec
Q psy14886 61 PAMYQCRAKNQL----KTRYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIG 131 (505)
Q Consensus 61 ~G~Y~C~~~~~~----~~~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~ 131 (505)
+|.|.|.+.+.. ......+.|.|.. .+|.+.... ....+..|+.++|.|.+.+ .|.+ .+.|++++..+.
T Consensus 91 sG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~ 168 (253)
T 3liz_H 91 TAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 168 (253)
T ss_dssp CEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEEC--C------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred CEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEec--CCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecc
Confidence 999999998752 1222345677752 233332211 2223567999999999988 5666 899999886321
Q ss_pred --------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 132 --------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 132 --------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
..+.+. ..+.|.|..+..+| |.|+|.|.|..+.......+.+
T Consensus 169 ~~~~~~~~~~g~~~--~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~ 218 (253)
T 3liz_H 169 VHTFPAVLQSDLYT--LSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP 218 (253)
T ss_dssp EEECCCEEETTEEE--EEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred eEeCCccccCCeEE--EEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence 112221 12468899998889 9999999998776665555544
|
| >2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=117.63 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=86.7
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeee-ccccccEEEEEEeCCccccCCCCceEEEEEEEcCC-CCcEEEEeeecCce
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGG-GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNV 445 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~-~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~ 445 (505)
|.|++|... .+.|....| .+|.++.+. ....++|.|.|++ |..+++.+|++|.|+|+..+. ..|......
T Consensus 1 G~s~~S~~~-~~~t~~~~P-~~P~~~~~~~~~~~~sv~l~W~~-p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~----- 72 (120)
T 2crm_A 1 GSSGSSGVV-EFTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEMAEGSNGNKWEMIYSG----- 72 (120)
T ss_dssp CCCTTCSCC-SCCSCCCCC-CCCCCCEEEEEEETTEEEEECCC-CTTCCSSCCCEEEEEEEESSSSCCCEEEECS-----
T ss_pred CCCCCcCCE-EEEeCCCCC-CCCCCCEEeeccCCCEEEEEECC-CCcCCCCeeeEEEEEEccCCCCcCCEEEEec-----
Confidence 567777775 555655555 567776665 6678899999998 344456789999999999875 578755321
Q ss_pred eeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 446 GIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 446 ~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
..+.+.+.+|.|++.|.|||+|+|.+|.|++|+.+.+.|.+
T Consensus 73 ~~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~ 113 (120)
T 2crm_A 73 ATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPA 113 (120)
T ss_dssp SCSEEEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCCC
T ss_pred cccEEEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcCC
Confidence 24578999999999999999999999999999998887753
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=137.88 Aligned_cols=163 Identities=12% Similarity=0.189 Sum_probs=103.6
Q ss_pred CCCCCceEEEEEEecc---CCC-eEEEEECCEECcCCCC--C-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGV---PDV-TYSWFRNGELLNSETL--P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~---p~~-~~~W~~~~~~l~~~~~--~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|++++|.|.+.+. |.+ .|.|+|++..+..... . ....+++. ..++|.|.+++ .+|+|.|+|.+.+..+
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~s~L~I~~~~-~~D~g~Y~C~~~~~~~ 106 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-SVSELPIVERD-WLNGKTFKCKVNSGAF 106 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEE-EEEEEECCHHH-HHTTCCEEEEEECSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEE-EEEEEEEEhhH-ccCCCeEEEEEecccC
Confidence 4689999999999886 754 8999998866542100 0 01122332 33589999999 9999999999998876
Q ss_pred ceEeeEEEEE---EecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCC--cEEEeeCCCEE-
Q psy14886 74 TRYSSAQLRV---LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGG--RRKIFENGNLL- 145 (505)
Q Consensus 74 ~~~~~~~l~v---~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~--~~~~~~~~~l~- 145 (505)
.......+.. ...+|.+.+.+.... ...|+.++|.|.+.|. |. ..|.|+++|..+.... +.....++++.
T Consensus 107 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~ 184 (239)
T 1i1c_A 107 PAPIEKSISKPEGTPRGPQVYTMAPPKE--EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFL 184 (239)
T ss_dssp SSCEEEEECCCSSCCBCCEEEEECCCGG--GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE
T ss_pred CCCcEEEEecCCCCCcCCEEEEECCChH--HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEE
Confidence 5322222211 112444433332211 2357899999999884 54 4899999999875321 11223344433
Q ss_pred -----EcCCCCCCCEEEEEEEEcCCCc
Q psy14886 146 -----ISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 146 -----i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|......|.|.|+|.|.|....
T Consensus 185 ~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 185 YSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 3333335689999999987543
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-16 Score=135.61 Aligned_cols=168 Identities=19% Similarity=0.218 Sum_probs=112.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEec------------CCCcEEEeeC---CCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNIIG------------SGGRRKIFEN---GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~~------------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C 159 (505)
....+.+|++++|.|.+.+.|.+.+.|+++ |..+. ...++..... ..|.|.+++.+|+|.|+|
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 86 (212)
T 1nfd_E 7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC 86 (212)
T ss_dssp SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred CeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEE
Confidence 456789999999999998887778999984 33221 1244444332 269999999999999999
Q ss_pred EEEcCCC-ce--eeeEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---
Q psy14886 160 TATNVHG-MD--ESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE--- 230 (505)
Q Consensus 160 ~~~~~~g-~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~--- 230 (505)
.+.|..+ .. .....|.|.. .++.+...+.......|+.+.|.|.+.+.+++.+.+.|+++|..+.......
T Consensus 87 ~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~ 166 (212)
T 1nfd_E 87 LSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPS 166 (212)
T ss_dssp EEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCB
T ss_pred EEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCce
Confidence 9997322 21 2234566642 2222222222233456889999999998754446788999999886532110
Q ss_pred -ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 231 -LETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 231 -~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.... ....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 167 ~~~~~--~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 167 KQGQN--YMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CSSSC--EEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred ecCCC--ceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 0011 111245778888889999999999998775
|
| >1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=116.42 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=79.8
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
..|+.+|....+...+.++|.|.|++ |..+++.+|++|.|+|+..+...|...... ....+.+.+.+|.|++.|.|
T Consensus 8 ~~~p~~P~~P~v~~v~~~sv~L~W~~-P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~---~~~~~~~~v~~L~p~t~Y~f 83 (112)
T 1bpv_A 8 SSPIDPPGKPVPLNITRHTVTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWLKANFS---NILENEFTVSGLTEDAAYEF 83 (112)
T ss_dssp -CCCCCCCCCEEEEEETTEEEEECCC-CSCCTTCCCSCCEEEEEETTSCCCEECCCS---CCCSSEEEECSCCSSCCEEE
T ss_pred CCCCCCCCCCEEEEeeCCEEEEEECC-CCcCCCCcccEEEEEEEECCCCceEEeecc---cCccCEEEECCCCCCCEEEE
Confidence 45666777777777889999999997 355667789999999999887888754321 12345788999999999999
Q ss_pred EEEEecCCCC-CCCCceEEEeecc
Q psy14886 464 KVQAINDVGP-GPESEVVTIWHDP 486 (505)
Q Consensus 464 ~v~a~n~~G~-g~~s~~~~~~t~p 486 (505)
||.|+|.+|. |++|+.+...|..
T Consensus 84 rV~A~N~~G~~s~~S~~~~~~t~~ 107 (112)
T 1bpv_A 84 RVIAKNAAGAISPPSEPSDAITCR 107 (112)
T ss_dssp EEEEECTTSCEEEEEEEEEEECSC
T ss_pred EEEEEECCCCCCCCCCCCCCEEeC
Confidence 9999999997 9999988887754
|
| >2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-16 Score=115.46 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-C--CCcEEEEeeecCceeeEEEEcCCcccee
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-D--TEFQSETLKEYGNVGIAVVRIPSEFYYT 459 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~~L~p~~ 459 (505)
+..| .+|.++++...+.++|.|.|++ +...+|.|++|+|+|+..+ . ..|.... . ..+.+.|.+|.|++
T Consensus 5 ~~~P-~~p~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~--~----~~~~~~i~~L~p~t 75 (109)
T 2e7h_A 5 SSGP-PAVSDIRVTRSSPSSLSLAWAV--PRAPSGAVLDYEVKYHEKGAEGPSSVRFLK--T----SENRAELRGLKRGA 75 (109)
T ss_dssp CCSS-CCCCCCEEEEEETTEEEEECCC--CCCSSSCCCEEEEEEEETTCCSTTTSEEEE--E----SSSEEEEESCCTTS
T ss_pred CCCC-CCCCccEEEecCCCEEEEEeCC--CCCCCCcEeEEEEEEEECCCCCCceeEEEc--c----CCCEEEECCCCCCC
Confidence 4444 5688999998999999999998 3578899999999999876 2 2233222 1 23478899999999
Q ss_pred eEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 460 EYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 76 ~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 102 (109)
T 2e7h_A 76 SYLVQVRARSEAGYGPFGQEHHSQTQL 102 (109)
T ss_dssp CEEEEEEEECSSCBCCCCSCEECCCCC
T ss_pred eEEEEEEEEeCCccCCCCCCEEEEcCC
Confidence 999999999999999999999998875
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=130.64 Aligned_cols=166 Identities=18% Similarity=0.218 Sum_probs=111.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC----CCeEEEEEC--CEE---ec---------CCCcEEEeeCC---CEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP----KPKFVWKKD--GNI---IG---------SGGRRKIFENG---NLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~--g~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~G 155 (505)
..+.+.+|++++|.|.+.+.| .+.+.|+++ +.. +. ...++.+...+ +|.|.+++.+|+|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (240)
T 1moe_A 9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA 88 (240)
T ss_dssp SEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCE
Confidence 456789999999999999887 779999985 221 10 12344443322 6999999999999
Q ss_pred EEEEEEEcCCCc-eeeeEEEEEEeCC-----eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC--CEEecC--
Q psy14886 156 IYSCTATNVHGM-DESKGRLIVLHGP-----SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGN-- 225 (505)
Q Consensus 156 ~y~C~~~~~~g~-~~~~~~l~v~~~p-----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~--~~~~~~-- 225 (505)
.|+|.+.+..+. ....+.|.|...+ ......+....+..|+.+.|.|.+.+.+.+...+.|+++ +..+..
T Consensus 89 ~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~ 168 (240)
T 1moe_A 89 TYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIG 168 (240)
T ss_dssp EEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEE
T ss_pred EEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEE
Confidence 999999988654 3344677776542 223333556678899999999999988754456779884 211100
Q ss_pred -----CCC-----CcccCCeeee----cCCeEEEecCCCCCCEEEEEEEEe
Q psy14886 226 -----MDL-----NELETPNINI----DGGLLEITNASFADAGEYECVVKS 262 (505)
Q Consensus 226 -----~~~-----~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~n 262 (505)
... .......... ....|.|.++..+|+|.|.|.|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 169 RIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp EEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 000 0000011111 124799999999999999999984
|
| >1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-16 Score=117.97 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEE---cCCCCcEEEEeeecCceeeEEEEcCCcccee
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK---KNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 459 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~ 459 (505)
+..+|.+|.++.+.....++|.|.|.+ +.+++++|++|.|+|+. .+...|....... .....+.+.+.+|.|++
T Consensus 14 ~~~~P~~P~~l~~~~~~~~sv~l~W~p--~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~v~~L~p~t 90 (124)
T 1wis_A 14 PPELPGPPTNLGISNIGPRSVTLQFRP--GYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS-NEPDARSMEVPDLNPFT 90 (124)
T ss_dssp CCCCCCCCEEEEEESCCSSCEEEEEEC--CCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEE-SCTTCSEEEECSCCTTS
T ss_pred CCCCCccCCCCEEEEecCCEEEEEEEC--CCCCCCcccEEEEEEEECCCCCCCCCeEeeeEc-cCCCceEEEeCCCCCCC
Confidence 344567999999998899999999977 56888999999999998 3567787544321 11234678999999999
Q ss_pred eEEEEEEEecCCCCCCCCceEE-Eeec
Q psy14886 460 EYEVKVQAINDVGPGPESEVVT-IWHD 485 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~g~~s~~~~-~~t~ 485 (505)
.|.|||.|+|.+|.|++|+... +.|.
T Consensus 91 ~Y~frV~A~N~~G~s~~S~~~~~~~T~ 117 (124)
T 1wis_A 91 CYSFRMRQVNIVGTSPPSQPSRKIQTL 117 (124)
T ss_dssp EECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred EEEEEEEEEECCccCCCcCCccceEcC
Confidence 9999999999999999998754 4554
|
| >1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=116.64 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=88.2
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC-CCcEEEEeeecCcee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVG 446 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~ 446 (505)
|.|.+|... .+.|....| .+|.++.+...+.++|.|.|++ +.+.+++|++|.|+|+..+. ..|...... .
T Consensus 1 G~s~~S~~~-~~~t~~~~P-~~P~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-----~ 71 (118)
T 1x3d_A 1 GSSGSSGAE-IFTTLSCEP-DIPNPPRIANRTKNSLTLQWKA--PSDNGSKIQNFVLEWDEGKGNGEFCQCYMG-----S 71 (118)
T ss_dssp CCCCCCCCC-CCCCCCSCC-CCCCCCEEEEEETTEEEEECCC--CCCCSSCEEEEEEEECTTTSSSCCEEEEEE-----S
T ss_pred CCCCCCcCE-EEEcCCCCC-cCCCCcEEeccCCCEEEEEECC--CCCCCCcceEEEEEEecCCCCCCeEEeecc-----C
Confidence 566667664 555655554 6888899888889999999998 44678899999999998764 678654322 2
Q ss_pred eEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 447 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 447 ~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.+.+.+.+|.|++.|.|||+|+|.+|.|++|+.+.+.|.+
T Consensus 72 ~~~~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~ 111 (118)
T 1x3d_A 72 QKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 111 (118)
T ss_dssp CSEEEEESCCTTCEEEEECCEEESSCBCCCCCCEEEECSC
T ss_pred CcEEEeCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcCC
Confidence 3578899999999999999999999999999999988764
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-16 Score=134.83 Aligned_cols=162 Identities=14% Similarity=0.261 Sum_probs=95.8
Q ss_pred CCCCceEEEEEEeccC----CCeEEEEECCEECcCCCC---CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 2 DNQADLTWTCEAFGVP----DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p----~~~~~W~~~~~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+|++++|.|.+.|.+ ...|.|+|++.++..... .....+.+.+. +.|.|.... ..|+|.|+|.|.|..+.
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~-~~l~i~~~d-~~d~g~Y~C~a~n~~~~ 93 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVV-SVLTVLHQD-WLNGKEYKCKVSNKALP 93 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEE-EEEECCHHH-HHTTCCEEEEEECTTSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEE-EEEEEEHHH-ccCCceEEEEEEcCcCC
Confidence 6899999999998864 359999999987753210 00011122111 123333333 34599999999988765
Q ss_pred eEeeEEEEE---EecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCC--cEEEeeCCCE---
Q psy14886 75 RYSSAQLRV---LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGG--RRKIFENGNL--- 144 (505)
Q Consensus 75 ~~~~~~l~v---~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~--~~~~~~~~~l--- 144 (505)
......+.. ...+|.+.+.+.... ...|..+.|.|.+.|. |. +.|.|+++|..+.... ......++++
T Consensus 94 ~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~ 171 (207)
T 1l6x_A 94 APIEKTISKAKGQPREPQVYTLPPSRD--ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLY 171 (207)
T ss_dssp SCEEEEECCCCSCCBCCEEEEECCCGG--GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEE
T ss_pred cceEEEeccCCCCCcCCEEEEECCChH--HhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEE
Confidence 422222311 112444433221111 2246679999999885 54 4999999999875321 1122334443
Q ss_pred ---EEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 145 ---LISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 145 ---~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
.+......|.|.|+|.|.|....
T Consensus 172 s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 172 SKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 33343446799999999987543
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-16 Score=138.90 Aligned_cols=166 Identities=17% Similarity=0.290 Sum_probs=106.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc------C----CCCCCCCCCcEEEEC-----CeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN------S----ETLPLEDQDRYFIQD-----NVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~------~----~~~~~~~~~~~~~~~-----~~L~i~~~~~~~d~G~ 63 (505)
+.+|++++|.|.+.+.+.+.+.|+|++ ..+. . ........+|+.+.. .+|.|.+++ .+|+|.
T Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~-~~D~G~ 114 (279)
T 2wbj_D 36 SKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAH-PEDSSF 114 (279)
T ss_dssp EETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCC-GGGCEE
T ss_pred ecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCC-ccCCEE
Confidence 358999999999988788999999964 1110 0 000001246776642 389999999 999999
Q ss_pred EEEEEEcccC----c--eEeeEEEEEEec-----CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEe
Q psy14886 64 YQCRAKNQLK----T--RYSSAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNII 130 (505)
Q Consensus 64 Y~C~~~~~~~----~--~~~~~~l~v~~~-----~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~ 130 (505)
|+|.+.+..+ . ....+.|.|... +|.+.+.. +....+.+|+.++|.|.+.+. |. +.+.|+++|+.+
T Consensus 115 Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l 193 (279)
T 2wbj_D 115 YICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 193 (279)
T ss_dssp EEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEE-CCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEEC
T ss_pred EEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEEC-CCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEEC
Confidence 9999998421 1 112356777641 33332211 011123468999999999886 43 699999999987
Q ss_pred cCCCcEE------E--eeCCC------EEEcCCCCC-CCEEEEEEEEcCCCce
Q psy14886 131 GSGGRRK------I--FENGN------LLISPVSRD-DSGIYSCTATNVHGMD 168 (505)
Q Consensus 131 ~~~~~~~------~--~~~~~------l~i~~v~~~-d~G~y~C~~~~~~g~~ 168 (505)
....... . ..+++ |.|.+.... +.|.|+|.|.|.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 194 HSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp CTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred CCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 6432111 0 02222 677776665 4778999999875443
|
| >1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=114.44 Aligned_cols=102 Identities=19% Similarity=0.173 Sum_probs=82.1
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.+.|.+..| .+|.++.+...+.++|.|.|++ +.+.++.|++|+|+|+..+...+....... ..+.+.|.+|.|
T Consensus 3 ~~~T~~~~P-~~P~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p 75 (111)
T 1x5l_A 3 SGSSGQAAP-SQVVVIRQERAGQTSVSLLWQE--PEQPNGIILEYEIKYYEKDKEMQSYSTLKA----VTTRATVSGLKP 75 (111)
T ss_dssp CCCCSCCCC-CCCCCEECSCBCSSCEEEEECC--CSCCCSCCCEEEEEEEESSSCCSSCEEEEE----SSSEEEECSCCT
T ss_pred eEEcCCCCC-CCCceEEEEEcCCCEEEEEECC--CCCCCCEEEEEEEEEEECCCCceeEEEecC----CCCEEEEcCCCC
Confidence 355655555 5788999988889999999998 466788999999999998743333223222 346789999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
++.|.|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 76 ~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 104 (111)
T 1x5l_A 76 GTRYVFQVRARTSAGCGRFSQAMEVETGK 104 (111)
T ss_dssp TCEEEECEEEEETTEECCCCCCEEEECCC
T ss_pred CCEEEEEEEEEeCCcCCCCcccEEEEcCC
Confidence 99999999999999999999999998865
|
| >1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-16 Score=117.31 Aligned_cols=112 Identities=22% Similarity=0.246 Sum_probs=87.3
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEE-EEeeecCcee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS-ETLKEYGNVG 446 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~ 446 (505)
|.|.+|... .+.|.+..| .+|.++++...+.++|.|.|++ +.+.+|.|++|+|+|+..+...+.. ..+. ..
T Consensus 1 G~g~~S~~~-~~~T~~~~P-~~P~~l~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~----~~ 72 (119)
T 1wfn_A 1 GSSGSSGPQ-LVRTHEDVP-GPVGHLSFSEILDTSLKVSWQE--PGEKNGILTGYRISWEEYNRTNTRVTHYLP----NV 72 (119)
T ss_dssp CCCCCSCCC-SCCSSCCSC-CCCSCCEEESCCSSEEEEECCC--CTTCCSCCCEEEEEEEESSCGGGCCCEEEC----SS
T ss_pred CCCCCCCCE-EEECCCCCC-CCCCceEEEECCCCEEEEEEcC--CCCCCCcEEEEEEEEEECCCCCceEEEEeC----CC
Confidence 567777764 677777766 5788999998899999999998 4578889999999999887433321 2221 23
Q ss_pred eEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 447 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 447 ~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
.+.+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.....|+
T Consensus 73 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~~pp 113 (119)
T 1wfn_A 73 TLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPP 113 (119)
T ss_dssp CCEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEEECCCCC
T ss_pred ceEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEccCCC
Confidence 46788999999999999999999999999999885544443
|
| >2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=114.10 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=80.6
Q ss_pred CCCCCCCceeee-eccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 384 DKPYQAPSRIGG-GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 384 ~~p~~~P~~~~~-~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
..+|.+|.++.+ .....++|.|.|++ |..+.+++|++|.|+|+..+...|..... ...+.+.|.+|.|++.|.
T Consensus 6 ~~~P~~P~~~~~~~~~~~~sv~l~W~~-P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-----~~~~~~~v~~L~p~t~Y~ 79 (110)
T 2crz_A 6 SGPPGPCLPPRLQGRPKAKEIQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPREVYQ-----GSEVECTVSSLLPGKTYS 79 (110)
T ss_dssp CCCCCCCCCCEECSCCCSSEEEEECCC-CSCCTTSCCCEEEEEEECTTSCCCEEEEE-----ESCSEEEEESCCTTCEEE
T ss_pred CCCCCCCCCceeccccCCCEEEEEeCC-CCCCCCceeEEEEEEEEeCCCCceEEEEe-----CCcEEEEECCcCCCCEEE
Confidence 445578888888 46678899999987 35567889999999999888778876542 134678899999999999
Q ss_pred EEEEEecCCCCCCCCceEEEeecc
Q psy14886 463 VKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|||+|+|.+|.|++|+.+.+.|.+
T Consensus 80 frV~A~n~~G~g~~S~~~~~~T~~ 103 (110)
T 2crz_A 80 FRLRAANKMGFGPFSEKCDITTAP 103 (110)
T ss_dssp ECCEEECSSCBCCCCCCEEEECCC
T ss_pred EEEEEEcCCccCCCCCccccccCC
Confidence 999999999999999999998864
|
| >1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=112.76 Aligned_cols=97 Identities=21% Similarity=0.139 Sum_probs=77.8
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
...+|.+|.++.+...+.++|.|.|++ +.+.+++|++|.|+|+..+ ..|.... .. ..+.+.|.+|.|++.|.
T Consensus 4 ~~~~P~~P~~~~~~~~s~~sv~l~W~~--p~~~g~~i~~Y~v~~~~~~-~~~~~~~-~~----~~~~~~v~~L~p~t~Y~ 75 (106)
T 1x4x_A 4 GSSGPDQCKPPQVTCRSATCAQVNWEV--PLSNGTDVTEYRLEWGGVE-GSMQICY-CG----PGLSYEIKGLSPATTYY 75 (106)
T ss_dssp SCCSCCCCCCCCCEEEETTEEEEECCC--CSCSSSCCCEEEEEEESST-TSCCEEE-EE----SCSEEEEESCCSSCEEE
T ss_pred CCCCcCCCCCCEEEEcCCCEEEEEEcC--CCCCCCcceEEEEEEEcCC-CceEEEE-eC----CcceEEEcCCCCCCEEE
Confidence 455667899999988889999999998 3444458999999998766 3343222 11 23578899999999999
Q ss_pred EEEEEecCCCCCCCCceEEEeecce
Q psy14886 463 VKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|||+|+|.+|.|++|+.+.+.|.+.
T Consensus 76 frV~A~n~~G~g~~S~~v~~~T~~~ 100 (106)
T 1x4x_A 76 CRVQALSVVGAGPFSEVVACVTPPS 100 (106)
T ss_dssp EEEEEECSSCCCCBCCCEEEECCCC
T ss_pred EEEEEEcCCcCCCCcCCEEEECCCC
Confidence 9999999999999999999988653
|
| >2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=114.60 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=82.5
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
...+|.+|.++.+...+.++|.|.|++ +.+.++.|++|+|+|+..+...|....... .....+.|.+|.|++.|.
T Consensus 14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~ 88 (119)
T 2ed7_A 14 SSVLPSAPRDVVPVLVSSRFVRLSWRP--PAEAKGNIQTFTVFFSREGDNRERALNTTQ---PGSLQLTVGNLKPEAMYT 88 (119)
T ss_dssp SSSSCCCCSCCEEEEECSSCEEEECCC--CSCCSSCEEEEEEEEEESSCCCCEEEECCC---TTCCEEEECSCCSSSEEE
T ss_pred CCCCCcCCcceEEEecCCCEEEEEEeC--CCCCCCcEEEEEEEEEeCCCCcceeeEeec---CCceEEEeCCCCCCCEEE
Confidence 444557999999988899999999998 456788999999999998866666443221 234678999999999999
Q ss_pred EEEEEecCCCCCCCCceEEEeecc
Q psy14886 463 VKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|+|+|+|.+|.|++|+.+.+.|.+
T Consensus 89 ~~V~A~n~~G~g~~S~~~~~~T~~ 112 (119)
T 2ed7_A 89 FRVVAYNEWGPGESSQPIKVATQP 112 (119)
T ss_dssp ECCEEEESSCBCSCCCCEEEECCC
T ss_pred EEEEEEcCCccCCCcCCEEEEeCC
Confidence 999999999999999999998864
|
| >2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=116.65 Aligned_cols=100 Identities=20% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCC-CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~-i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
+..|. +|.++.+...+.+ +.|.|++ +.+.+|. |++|+|+|+..+...|.............+.+.|.+|.|++.|
T Consensus 5 ~~~P~-~P~~~~~~~~~~t-v~l~W~~--P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 80 (122)
T 2e3v_A 5 SSGPS-SPSIDQVEPYSST-AQVQFDE--PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY 80 (122)
T ss_dssp -CCCC-CCEEEEEEECSSC-EEEEEEC--CCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEE
T ss_pred CcCCc-CCCccEEEecCCc-EEEEECC--CCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEE
Confidence 34454 4899999877777 9999998 3556665 9999999999988888543221111123467899999999999
Q ss_pred EEEEEEecCCCCCCCCceEEEeecc
Q psy14886 462 EVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|+|+|+|.+|.|++|+.+.+.|.|
T Consensus 81 ~~rV~A~n~~G~g~~S~~~~~~t~~ 105 (122)
T 2e3v_A 81 AVRLAALNGKGLGEISAASEFKTQP 105 (122)
T ss_dssp EEEEEEEETTEECCCCCCEEEECCC
T ss_pred EEEEEEEeCCccCCCcccccccccC
Confidence 9999999999999999999986654
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-15 Score=127.74 Aligned_cols=165 Identities=19% Similarity=0.298 Sum_probs=108.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEe---------------cCCCcEEEee----CCCEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNII---------------GSGGRRKIFE----NGNLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~---------------~~~~~~~~~~----~~~l~i~~v~~~d~G 155 (505)
..+.+.+|++++|.|. .+.|.+.+.|+++ +... ....++.+.. ..+|.|.+++.+|+|
T Consensus 8 ~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG 86 (238)
T 2p1y_A 8 RNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTS 86 (238)
T ss_dssp SEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCE
T ss_pred cceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCe
Confidence 4567899999999999 6778889999984 2111 0123444432 236999999999999
Q ss_pred EEEEEEEcCCCce-----eeeEEEEEEeCCe-----------eeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC
Q psy14886 156 IYSCTATNVHGMD-----ESKGRLIVLHGPS-----------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219 (505)
Q Consensus 156 ~y~C~~~~~~g~~-----~~~~~l~v~~~p~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~ 219 (505)
.|.|.+.+..|.. .....|.|...+. .+...+....+..|+.+.|.|.+.+.+.+ .+.|+++
T Consensus 87 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i~W~k~ 164 (238)
T 2p1y_A 87 VYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD--YFPWYQQ 164 (238)
T ss_dssp EEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC--EEEEEEE
T ss_pred eEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC--cEEEEEE
Confidence 9999999876521 1235677765443 33334556778899999999999988765 5668875
Q ss_pred CE-----EecC--CCCCcccCCeeee------cCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 220 GV-----RIGN--MDLNELETPNINI------DGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 220 ~~-----~~~~--~~~~~~~~~~~~~------~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
+. .+.. ..........+.. ....|.|.++..+|+|.|.|.|.|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 165 FPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp CTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 31 1100 0000000011111 12479999999999999999999974
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=129.90 Aligned_cols=169 Identities=17% Similarity=0.286 Sum_probs=111.5
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEECC--EE---e-c--C-------------CCcEEEeeC---C--CEEEcCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--NI---I-G--S-------------GGRRKIFEN---G--NLLISPV 149 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~~---~-~--~-------------~~~~~~~~~---~--~l~i~~v 149 (505)
...+.+|++++|.|.+.+.+ .+.+.|++++ .. + . . ..++.+..+ + +|.|.++
T Consensus 9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (220)
T 1pz5_B 9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence 35688999999999998765 6799999842 21 1 0 0 245554421 2 6999999
Q ss_pred CCCCCEEEEEEEEcCCCce-e--eeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCE
Q psy14886 150 SRDDSGIYSCTATNVHGMD-E--SKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGV 221 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~-~--~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~ 221 (505)
+.+|+|.|.|.+.+..+.. . ..+.|.|.. +|.+... +....+..|+.+.|.|.+.+. |.| +.+.|++++.
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~p-~~v~W~~~~~ 166 (220)
T 1pz5_B 89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPL-VPGCSDTSGSSVTLGCLVKGYFPEP-VTVKWNYGAL 166 (220)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEE-CCCSCCSCSSSEEEEEEEEEEBSSC-CEEEEGGGTC
T ss_pred CHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEc-ccccccCCCCcEEEEEEEEEEeCCC-eEEEEecCCc
Confidence 9999999999999875432 1 346677753 2333322 222234678999999999987 543 4778998775
Q ss_pred Ee---cCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEE
Q psy14886 222 RI---GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272 (505)
Q Consensus 222 ~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 272 (505)
.. ..... ... ......+.|.|.....++ |.|+|.|.|..|..+..+.
T Consensus 167 ~~~~~~~~~~--~~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 167 SSGVRTVSSV--LQS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp CTTEEECCCE--EET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred ccceEEcCCc--ccC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 31 11000 000 111224568888877766 9999999999997665543
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-16 Score=132.48 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=103.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc---C-C-----CCCCCCCCcEEEE------CCeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN---S-E-----TLPLEDQDRYFIQ------DNVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~---~-~-----~~~~~~~~~~~~~------~~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. . . .......+|+.+. ..+|.|.+++ .+|+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~ 90 (215)
T 1c5d_H 12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ-TEDT 90 (215)
T ss_dssp ECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC-GGGC
T ss_pred ecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC-cccC
Confidence 46899999999998754 5889999953 2110 0 0 0000124677653 1389999999 9999
Q ss_pred eEEEEEEEcccCc---eEeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCC
Q psy14886 62 AMYQCRAKNQLKT---RYSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG 133 (505)
Q Consensus 62 G~Y~C~~~~~~~~---~~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~ 133 (505)
|.|.|.+.+..+. ....+.|.|... +|.+...+.. ..+.+|+.++|.|.+.+. |.+ .+.|+++|..+...
T Consensus 91 G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~--~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~ 168 (215)
T 1c5d_H 91 AIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG--CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH 168 (215)
T ss_dssp EEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC--SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred EEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC--hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence 9999999876421 112467777632 2333222111 124689999999999886 777 99999988654311
Q ss_pred CcEEEeeCCCE----EEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 134 GRRKIFENGNL----LISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 134 ~~~~~~~~~~l----~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
.......++.+ .+.....+| |.|+|.|.|..+....
T Consensus 169 ~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~ 208 (215)
T 1c5d_H 169 TFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV 208 (215)
T ss_dssp BCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred ecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence 11111112221 122333355 9999999998776543
|
| >4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=121.08 Aligned_cols=186 Identities=14% Similarity=0.112 Sum_probs=128.1
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEe-----CCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-----NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
+|.++.+...... ..|+|+++.... ....|.|+|+. .+...|.....-.. ......-+..++..+.
T Consensus 9 ~P~nv~~~s~n~~-~iL~W~p~~~~~-~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~-------i~~~~Cdlt~~~~~~~ 79 (206)
T 4doh_B 9 APQQLSVLSTNMK-HLLMWSPVIAPG-ETVYYSVEYQGEYESLYTSHIWIPSSWCSL-------TEGPECDVTDDITATV 79 (206)
T ss_dssp CCCCCEEEEETTE-EEEECCCCCCSS-SCCEEEEEEEEHHHHHHSTTCCEEEEEEEE-------ESSSEEECTTTCCSSS
T ss_pred CCCeeEEEEeCCE-EEEEECCCCCCC-CCEEEEEEEEEeccccCCCccceecccccC-------CCCCEEcCCccccCCC
Confidence 4788888776665 699999985333 34789999994 45678987532111 1222333333366688
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcE
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ 435 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~ 435 (505)
.|.+||+|.+..+.+.++... .+........+||. +.+. ....+|.|.|+++ +.+..|.|.|.+.++..-.
T Consensus 80 ~Y~~RVrA~~~~~~S~w~~~~-~f~~~~~t~i~PP~-v~v~-~~~~~i~V~~~~p------~~~l~Y~v~y~~~~~~~~~ 150 (206)
T 4doh_B 80 PYNLRVRATLGSQTSAWSILK-HPFNRQSTILTRPG-MEIT-KDGFHLVIELEDL------GPQFEFLVAYWRREPGAEE 150 (206)
T ss_dssp CEEEEEEEEETTEECCCEECS-SCBCGGGCBCCCCC-EEEE-EETTEEEEEECCC------CTTCEEEEEEEESSSSCCC
T ss_pred CEEEEEEEEcCCCccCccccc-cccchhhcccCCCe-EEEE-eCCCEEEEEecCC------CCcEEEEEEEEEcCCCcee
Confidence 999999999998888876543 34444444455665 5554 5688999999873 5788999999998744322
Q ss_pred -EEEeeecCceeeEEEEcCCccceeeEEEEEEEecCC--CCCCCCceEEEeecceE
Q psy14886 436 -SETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTIWHDPLV 488 (505)
Q Consensus 436 -~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~--G~g~~s~~~~~~t~p~~ 488 (505)
...... ....+.|.+|.|++.|.|+|+|+... |.|.+|+...+.|...+
T Consensus 151 ~~~~~~~----~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~~t~~~~ 202 (206)
T 4doh_B 151 HVKMVRS----GGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEA 202 (206)
T ss_dssp EEEEECC----SSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEECC----
T ss_pred EEeEEcc----CCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeEEccchh
Confidence 111111 12467899999999999999999864 88999999999886544
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-15 Score=129.29 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=116.7
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---e--------------cCCCcEEEeeCC-----CEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I--------------GSGGRRKIFENG-----NLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~--------------~~~~~~~~~~~~-----~l~i~~v~ 150 (505)
..+.+.+|++++|.|.+.+.+ .+.+.|++. +.. + ....++.+..+. +|.|.+++
T Consensus 9 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 88 (253)
T 3uzq_A 9 GAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLT 88 (253)
T ss_dssp CCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCC
Confidence 346688999999999998854 679999982 211 1 012345544333 29999999
Q ss_pred CCCCEEEEEEEEcCCCcee-eeEEEEEEeC--------------CeeeeeCCCceEEEeeccEEEEEEeeecCCC--CeE
Q psy14886 151 RDDSGIYSCTATNVHGMDE-SKGRLIVLHG--------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELL--DVA 213 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~-~~~~l~v~~~--------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~ 213 (505)
.+|+|.|.|.+.+..+... ....|.|... +..+...+....+..|+.++|.|.+.+.+.+ ...
T Consensus 89 ~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~ 168 (253)
T 3uzq_A 89 SGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSF 168 (253)
T ss_dssp GGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEEC
T ss_pred cccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcE
Confidence 9999999999998665543 3466777542 2333344556788899999999999887654 135
Q ss_pred EEEEeC--CEEec---CCCC--C--cccCCee--eecCCeEEEecCCCCCCEEEEEEEEecCCc-EEEEEEEEEcCCCCC
Q psy14886 214 YIWTHN--GVRIG---NMDL--N--ELETPNI--NIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVEGPPGL 281 (505)
Q Consensus 214 ~~w~~~--~~~~~---~~~~--~--~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~~~~l~v~~~p~~ 281 (505)
+.|+++ +.... .... . ....... ......|.|.++..+|+|.|.|.|.|..+. ......|.|...+.+
T Consensus 169 v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~ 248 (253)
T 3uzq_A 169 MHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLEH 248 (253)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC---
T ss_pred EEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCCC
Confidence 679873 21111 0000 0 0000111 111236999999999999999999886543 233456667655443
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-16 Score=114.13 Aligned_cols=92 Identities=27% Similarity=0.528 Sum_probs=77.3
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~ 163 (505)
||.|...+ .+..+.+|+++.|.|.+.|.|.+.|.|+++|..+..+.++.+..++ +|.|.++..+|+|.|+|.|.|
T Consensus 13 pP~f~~~p--~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 90 (107)
T 3knb_B 13 PPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEeCC--CcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence 45555444 4467899999999999999999999999999999887777765544 599999999999999999999
Q ss_pred CCCceeeeEEEEEEeCC
Q psy14886 164 VHGMDESKGRLIVLHGP 180 (505)
Q Consensus 164 ~~g~~~~~~~l~v~~~p 180 (505)
..|.....+.|.|..+|
T Consensus 91 ~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 91 AAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp TTEEEEEEEEEEEEC--
T ss_pred CCCEEEEEEEEEEEcCC
Confidence 99999888999987654
|
| >2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=112.23 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=79.5
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|.+|.++++...+.++|.|.|++ +...++.|++|+|+|+..+...|...... .+.+.|.+|.|++.|.|+|+
T Consensus 8 P~~P~~l~~~~~~~~si~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~------~~~~~i~~L~p~t~Y~~~V~ 79 (106)
T 2ed8_A 8 PGPVENLQAVSTSPTSILITWEP--PAYANGPVQGYRLFCTEVSTGKEQNIEVD------GLSYKLEGLKKFTEYSLRFL 79 (106)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEC--CSSCSSCCCEEEEEEEETTTCCEEEEEEC------SSCEEEESCCTTCEEEEEEE
T ss_pred CcCCceeEEEecCCCEEEEEECC--CCCCCCCeeEEEEEEEECCCCceEEEeCC------ccEEEECCCCCCCEEEEEEE
Confidence 34899999998899999999998 34677899999999999887777644332 35788999999999999999
Q ss_pred EecCCCCCCCCceEEEeecce
Q psy14886 467 AINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|+|.+|.|++|+.+.++|...
T Consensus 80 A~n~~G~g~~S~~~~~~T~~~ 100 (106)
T 2ed8_A 80 AYNRYGPGVSTDDITVVTLSD 100 (106)
T ss_dssp EECSSCEEEECCCEEEECCCC
T ss_pred EEeCCccCCCcCCEEEEcCCC
Confidence 999999999999999988643
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=137.01 Aligned_cols=163 Identities=15% Similarity=0.235 Sum_probs=105.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc----CC---C---CCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN----SE---T---LPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~----~~---~---~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. .. . ......+|+.+. ..+|.|.+++ .+|
T Consensus 18 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 96 (261)
T 2xqy_G 18 VKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT-SED 96 (261)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred EcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC-ccc
Confidence 46899999999998766 6889999963 2111 00 0 000123577653 2489999999 999
Q ss_pred CeEEEEEEEcccCce---EeeEEEEEEec---CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecC
Q psy14886 61 PAMYQCRAKNQLKTR---YSSAQLRVLTL---KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGS 132 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~---~~~~~l~v~~~---~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~ 132 (505)
+|.|.|.+.+..+.. ...+.|.|... +|.+.... +...+.+|+.++|.|.+.+. |.+ .+.|++++..+..
T Consensus 97 sG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~ 174 (261)
T 2xqy_G 97 SAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLA--PVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 174 (261)
T ss_dssp CEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC--CCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTE
T ss_pred CeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeC--CCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCce
Confidence 999999999854211 12356777641 23332211 11125679999999999875 665 9999998875421
Q ss_pred --CCcE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 133 --GGRR----KIFENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 133 --~~~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
.... .......|.|.++..+| |.|+|.|.|....
T Consensus 175 ~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 175 HTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp EECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred EecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 1111 11112358888888878 9999999986543
|
| >3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=122.76 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=114.2
Q ss_pred CCCceEEEEE-eCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeecc--ccceeeeec--CceeeEEeeeccCCc
Q psy14886 281 LPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHV--IGKEVDRYT--GRKEASIENVLVPWS 355 (505)
Q Consensus 281 ~p~~~~~~~~-~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~--~~~~~~~~~--~~~~~~~~~~L~~~~ 355 (505)
.+.++.+... ....++.+|+++.+.+.+...|.+.|...... -....... .....+... ......+.. +...+
T Consensus 3 ~~~nlsC~~~~~~~~~~C~W~~g~~~~l~t~~~~l~~~~~~~~-c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~-~~~~~ 80 (206)
T 3v6o_A 3 VNINISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLY-CSDIPSIHPISEPKDCYLQSDGFYECIFQP-IFLLS 80 (206)
T ss_dssp -CCCCEEEECTTSSCEEEEECCCC--------EEEEEEECSSC-CCSSCCCCSSCEEECEEECTTSCEEEEECS-CCTTS
T ss_pred CCEEEEEEECCCCcEEEEEecCCCcCCcccccEEEEEEEcCcC-ccccccccccCcCCCCCCCCCCCceEEeCc-HHhcc
Confidence 4567777666 35899999998766554333688887754310 00000000 000001111 112333333 77789
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeecc-ccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGG-KIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTE 433 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~-~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~ 433 (505)
.|.|+|.|.|..|.+. |... .+.+.....+.||.++.+... ..+++.|+|++|.. .. .++.|.|+|+..+ ...
T Consensus 81 ~Y~~~V~a~N~~G~~~-s~~~-~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~--~~-~~l~yev~y~~~~~~~~ 155 (206)
T 3v6o_A 81 GYTMWIRINHSLGSLD-SPPT-CVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVF--PE-NNLQFQIRYGLSGKEVQ 155 (206)
T ss_dssp CEEEEEEEC---CCEE-CCCE-EECGGGGBCCCCCCSCEEEEETTTTEEEEEC-----------CEEEEEEEEESSSSCC
T ss_pred cEEEEEEEEcCCcccc-CCcc-cEeecceEcCCCCCceEeEEecCCCeEEEEECCCCC--CC-CcEEEEEEEEECCCCCc
Confidence 9999999999999875 3322 454555667789999888654 57899999998433 22 4689999999987 467
Q ss_pred cEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEE
Q psy14886 434 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481 (505)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~ 481 (505)
|....... .....+.|.+|.|++.|.|+|+|.+..|.|.+|++..
T Consensus 156 w~~~~~~~---~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~ 200 (206)
T 3v6o_A 156 WKMYEVYD---AKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSN 200 (206)
T ss_dssp CEEEEECC------CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCC
T ss_pred eEEEeccc---CcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCc
Confidence 87655332 2224678999999999999999999999998887654
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-17 Score=140.24 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=90.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EEe---c---------CCCcEEEe---eCCCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NII---G---------SGGRRKIF---ENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~~---~---------~~~~~~~~---~~~~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.+.+.+.+.+.|++++ ..+ . ...++... .+.+|.|.+++.+|+|.|.|
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 110 (233)
T 3bqu_C 31 ASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYC 110 (233)
T ss_dssp SBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEE
T ss_pred CeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEE
Confidence 3456889999999999988877789999843 211 0 01222222 12269999999999999999
Q ss_pred EEEcCCCceee-eEEEEEEe---CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC-CC---Ccc
Q psy14886 160 TATNVHGMDES-KGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DL---NEL 231 (505)
Q Consensus 160 ~~~~~~g~~~~-~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~---~~~ 231 (505)
.+.+..+.... ...|.|.. +|.+.... .......|+.++|.|.+.+.+++.+.+.|+++|..+... .. ...
T Consensus 111 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 189 (233)
T 3bqu_C 111 LQSDNLPYTFGGGTNLEIKRADAAPTVSIFP-PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD 189 (233)
T ss_dssp EECSSSSCCBCCCCBC---CCCBCCEEEEEC-CCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCC
T ss_pred EEecCCceeecCCEEEEEeCCCCCCEEEEeC-CCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCcc
Confidence 99887653322 23455544 23332222 222233688999999999876555678899998876543 00 000
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
.........+.|.|.....+|.|.|+|.|.|...
T Consensus 190 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 190 SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp TTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 0001111224678888888899999999998654
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-16 Score=135.51 Aligned_cols=163 Identities=18% Similarity=0.303 Sum_probs=92.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEECC--EECc----CC---C---CCCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRNG--ELLN----SE---T---LPLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~~--~~l~----~~---~---~~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+.+|++++|.|.+.+.+ ...+.|+|.+ ..+. .. . ......+|+.+. ..+|.|.+++ .+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~~D 90 (257)
T 3bn9_D 12 VKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR-AED 90 (257)
T ss_dssp ECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC-GGG
T ss_pred EcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC-hhh
Confidence 46899999999998765 5789999953 1110 00 0 000124577653 2489999999 999
Q ss_pred CeEEEEEEEcccC----------c--eE-eeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEE
Q psy14886 61 PAMYQCRAKNQLK----------T--RY-SSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFV 122 (505)
Q Consensus 61 ~G~Y~C~~~~~~~----------~--~~-~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~ 122 (505)
+|.|.|.+.+..+ . .. ..+.|.|.. .+|.+.... +...+.+|+.++|.|.+.+. |.+ .|.
T Consensus 91 sG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~--p~~~~~~g~~v~L~C~~~g~~P~pi~v~ 168 (257)
T 3bn9_D 91 TAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVS 168 (257)
T ss_dssp CEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCC--C-----------CCCEEEEEBSSCCEEE
T ss_pred CEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEec--CcccccCCCcEEEEEEEeeEECCCcEEE
Confidence 9999999998654 1 11 235777764 234433322 11235689999999999886 766 999
Q ss_pred EEECCEEecCC-CcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 123 WKKDGNIIGSG-GRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 123 W~~~g~~~~~~-~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|++++..+... .......++ .|.|.++...| |.|+|.|.|....
T Consensus 169 W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~ 219 (257)
T 3bn9_D 169 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 219 (257)
T ss_dssp ETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred EeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence 99998764211 000111222 36677777667 9999999986433
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-16 Score=137.93 Aligned_cols=160 Identities=11% Similarity=0.155 Sum_probs=103.8
Q ss_pred CCCCceEEEEEEecc-CC--CeEEEEECCEEC-cCCCC-C-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEAFGV-PD--VTYSWFRNGELL-NSETL-P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~--~~~~W~~~~~~l-~~~~~-~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|++++|.|.+.+. |. ..|+|+++|..+ ..... . ....+.+. ..++|.|.+++ .+|+|.|+|.+.+..+..
T Consensus 26 ~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~-~~s~L~I~~~~-~~D~g~Y~C~~~~~~~~~ 103 (231)
T 2w59_A 26 YISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYS-ASSAVPVSTQD-WLSGERFTCTVQHEELPL 103 (231)
T ss_dssp HTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEE-EEEEEECCHHH-HHTTCCEEEEEECTTCSS
T ss_pred ccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEE-EEEEEEecchh-ccCCCEEEEEEEcCCCCC
Confidence 479999999999884 63 499999999877 31100 0 00122332 33579999999 999999999999876542
Q ss_pred EeeEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCCC-C-CCeEEEEECCEEecCCCcE----EEe-----
Q psy14886 76 YSSAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGGRR----KIF----- 139 (505)
Q Consensus 76 ~~~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~~----~~~----- 139 (505)
.+.+.|.. .+|.+.+...... ...+..++|.|.+.|. | .+.|.|+++|..+...... ...
T Consensus 104 --~~~~~v~~~~~~~~~P~v~v~~~~~~--~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 179 (231)
T 2w59_A 104 --PLSKSVYRNTGPTTPPLIYPFAPHPE--ELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTAN 179 (231)
T ss_dssp --CEEEEECCCCSCCBCCEEEEECCCGG--GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSC
T ss_pred --ceEEEEecCCCCCcCCEEEEeCCCHH--HhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCccccc
Confidence 33344421 2343332221111 1235679999999885 4 4699999999988643211 111
Q ss_pred ---eC-C------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 140 ---EN-G------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 140 ---~~-~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
.+ + .|.|......|.|.|+|.|.|....
T Consensus 180 ~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 180 GAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp C---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred ccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 23 3 3667777777899999999987654
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-15 Score=127.30 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=109.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--------------CCEEec---CCCcEEEeeC----CCEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--------------DGNIIG---SGGRRKIFEN----GNLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--------------~g~~~~---~~~~~~~~~~----~~l~i~~v~~~d~G 155 (505)
..+.+.+|++++|.|.+.+ +.+.+.|++ ++.... ...++.+..+ .+|.|.+++.+|+|
T Consensus 10 ~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 88 (240)
T 3q5y_A 10 RHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSA 88 (240)
T ss_dssp SEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCE
T ss_pred ceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCE
Confidence 4567899999999999876 677999998 221111 1235544432 25999999999999
Q ss_pred EEEEEEEcCC---CceeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 156 IYSCTATNVH---GMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 156 ~y~C~~~~~~---g~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
.|.|.+.+.. ........|.|.. +|.+....+....+..|+.+.|.|.+.+.+++.+.+.|+++|..+...
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~ 168 (240)
T 3q5y_A 89 MYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 168 (240)
T ss_dssp EEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred EEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCc
Confidence 9999998321 2223335677763 333333333333445688999999999865555688899999988653
Q ss_pred CCCcccC----CeeeecCCeEEEecCCCCC-CEEEEEEEEecCCc
Q psy14886 227 DLNELET----PNINIDGGLLEITNASFAD-AGEYECVVKSTVGK 266 (505)
Q Consensus 227 ~~~~~~~----~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~ 266 (505)
....... .......+.|.|.....+| .|.|+|.|.|....
T Consensus 169 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 169 VSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp EEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 2110000 0011112347777777777 77999999986554
|
| >2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=111.29 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
..+|.+|..+.+. ...+++.|.|.+ +.+++.+|++|.|+|+..+...|....... . ....+.|.+|.|++.|+|
T Consensus 6 ~~~P~pP~~~~~~-~~~~sv~L~W~p--~~dggsPI~~Y~I~yr~~~~~~w~~~~~~~-~--~~~~~~l~~L~p~t~Y~f 79 (114)
T 2kbg_A 6 MREPSPPSIHGQP-SSGKSFKLSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKVQ-G--NKDHIILEHLQWTMGYEV 79 (114)
T ss_dssp -CCCCSCCEECCB-CSTTCEEEEECC--CCCSSSCCSEEEEEEEESSCCSCCEEEEEE-T--TTCCEEECCCCTTCCEEE
T ss_pred CCCccCCcccccc-cCCCEEEEEEEC--CCCCCCcccEEEEEEEeCCCCCcEEeEEcC-C--CcCEEEEcCCCCCCEEEE
Confidence 3466788776655 678999999997 678999999999999998766665433222 2 235688999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeec
Q psy14886 464 KVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
||.|+|.+|.|.+|.. .+.|.
T Consensus 80 rV~A~N~~G~s~pS~~-~~~T~ 100 (114)
T 2kbg_A 80 QITAANRLGYSEPTVY-EFSMP 100 (114)
T ss_dssp EEEEECTTSCEEEEEE-EECCC
T ss_pred EEEEEeCCcCcCCcCC-EEEcC
Confidence 9999999999999974 56664
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-15 Score=129.30 Aligned_cols=179 Identities=16% Similarity=0.223 Sum_probs=113.9
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---e--------------cCCCcEEEeeCC-----CEEEcCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I--------------GSGGRRKIFENG-----NLLISPVSRD 152 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~--------------~~~~~~~~~~~~-----~l~i~~v~~~ 152 (505)
..+.+|++++|.|.+.+.+ .+.+.|++. +.. + ....++.+..+. +|.|.+++.+
T Consensus 12 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 91 (256)
T 3umt_A 12 ELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSE 91 (256)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred eEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcc
Confidence 5588999999999988765 679999973 211 1 012344444322 3999999999
Q ss_pred CCEEEEEEEEcC----CCceeeeEEEEEEeC---------------CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeE
Q psy14886 153 DSGIYSCTATNV----HGMDESKGRLIVLHG---------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213 (505)
Q Consensus 153 d~G~y~C~~~~~----~g~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 213 (505)
|+|.|.|.+.+. .+.......|.|... ++.+...+....+..|+.++|.|.+.+.+.+ .
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--~ 169 (256)
T 3umt_A 92 DSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS--N 169 (256)
T ss_dssp GCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT--C
T ss_pred cCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc--E
Confidence 999999999987 233334467777642 3333444556788899999999999987766 4
Q ss_pred EEEEeC--CEEec---CCCC--C--cccCCee--eecCCeEEEecCCCCCCEEEEEEEEecCCcE-EEEEEEEEcCCC
Q psy14886 214 YIWTHN--GVRIG---NMDL--N--ELETPNI--NIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPP 279 (505)
Q Consensus 214 ~~w~~~--~~~~~---~~~~--~--~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l~v~~~p 279 (505)
+.|+++ +.... .... . ....... ......|.|.++..+|+|.|.|.+.+..+.. .....|.|...+
T Consensus 170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 568773 22111 0000 0 0000111 1122369999999999999999998865432 234566665443
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=126.21 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=107.6
Q ss_pred ceEEeeCCCeEEEEeecCCC--CCCeEEEEECC--EE---ec---------CCCcEEEeeCC---CEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA--PKPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y 157 (505)
....+.+|++++|.|.+.+. +.+.+.|+++. .. +. ...++.....+ +|.|.+++.+|+|.|
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y 89 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY 89 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence 34678999999999999887 67899999842 11 10 12344443332 599999999999999
Q ss_pred EEEEEcCCCce---eeeEEEEEEeCCe-------------------eeeeCCCceEEEeeccEEEEEEeeecCCCCeEEE
Q psy14886 158 SCTATNVHGMD---ESKGRLIVLHGPS-------------------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 215 (505)
Q Consensus 158 ~C~~~~~~g~~---~~~~~l~v~~~p~-------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 215 (505)
.|.+.+..+.. .....|.|...+. +....+....+..|+.++|.|.+.+.+.+...+.
T Consensus 90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~ 169 (256)
T 3ux9_B 90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS 169 (256)
T ss_dssp EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEE
Confidence 99999865422 2335677765431 1112223455788999999999988764455778
Q ss_pred EEeC--CEEec------CCCC------CcccCCeeee----cCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 216 WTHN--GVRIG------NMDL------NELETPNINI----DGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 216 w~~~--~~~~~------~~~~------~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
|+++ +..+. .... .......... ....|.|.++..+|+|.|.|.|.|..
T Consensus 170 W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 170 WVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 9875 32110 0000 0000011111 12359999999999999999999864
|
| >2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=111.53 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=77.9
Q ss_pred CCCCceeeeec--cccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 387 YQAPSRIGGGG--GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 387 ~~~P~~~~~~~--~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
|.+|.++++.. .+.++|.|.|++ +.+.++.|++|+|+|+..+...|..... ..+.+.|.+|.|++.|.|+
T Consensus 8 P~~P~~l~~~~~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~------~~~~~~l~~L~p~t~Y~~~ 79 (108)
T 2dm4_A 8 PDAPRNLQLSLPREAEGVIVGHWAP--PIHTHGLIREYIVEYSRSGSKMWASQRA------ASNFTEIKNLLVNTLYTVR 79 (108)
T ss_dssp TTSCEEEEEECCTTCSSCEEEEEEC--CSCCSSCEEEEEEEEEETTCSCCEEEEE------SSSEEEECSCCSSCEEEEE
T ss_pred CcCCcCeEEEEeccCCCEEEEEEcC--CCCCCCcEEEEEEEEEECCCCCeEEecC------CccEEEeCCCCCCCEEEEE
Confidence 35899997754 578999999999 4478899999999999988777875432 2358899999999999999
Q ss_pred EEEecCCCCCCCCceEEEeec
Q psy14886 465 VQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 465 v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|+|+|.+|.|++|+.+.+.|.
T Consensus 80 V~A~n~~G~g~~S~~~~~~T~ 100 (108)
T 2dm4_A 80 VAAVTSRGIGNWSDSKSITTI 100 (108)
T ss_dssp EEEEESSCEEEECCCEEEECC
T ss_pred EEEECCCceeCCCCCEEEECC
Confidence 999999999999999999885
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=128.98 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=109.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EE---e----------cCCCcEEEee-----CCCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NI---I----------GSGGRRKIFE-----NGNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~---~----------~~~~~~~~~~-----~~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|++++|.|.+.+.|.+.+.|++.. .. + ....++.+.. ..+|.|.+++.+|+|.
T Consensus 11 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~ 90 (256)
T 3tf7_C 11 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAV 90 (256)
T ss_dssp SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSE
T ss_pred ceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEE
Confidence 4577899999999999988888999999832 11 1 0122333321 1259999999999999
Q ss_pred EEEEEEcCCCce----eeeEEEEEEe-------------------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeE
Q psy14886 157 YSCTATNVHGMD----ESKGRLIVLH-------------------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213 (505)
Q Consensus 157 y~C~~~~~~g~~----~~~~~l~v~~-------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 213 (505)
|.|.+.+..+.. .....|.|.. .++.+...+....+..|+.++|.|.+.+. .+ .
T Consensus 91 Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~--~ 167 (256)
T 3tf7_C 91 YFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HN--Y 167 (256)
T ss_dssp EEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CS--E
T ss_pred EEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ce--E
Confidence 999999876522 2235677764 13334445566677899999999999876 33 5
Q ss_pred EEEEeCC--EEec--C----CCCCc----ccCCee---eecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 214 YIWTHNG--VRIG--N----MDLNE----LETPNI---NIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 214 ~~w~~~~--~~~~--~----~~~~~----~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
+.|++.. .... . ..... ...... ......|.|.++..+|+|.|.|.|.|..|..
T Consensus 168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 236 (256)
T 3tf7_C 168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL 236 (256)
T ss_dssp EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence 6687621 1110 0 00000 000000 1123479999999999999999999987753
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-16 Score=135.70 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=102.4
Q ss_pred eeCCCeEEEEeecCCC---CC-CeEEEEECCEEecCCCcE--------EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 101 AGEGGNVTIFCNPEAA---PK-PKFVWKKDGNIIGSGGRR--------KIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~---p~-~~i~W~~~g~~~~~~~~~--------~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+.+|++++|.|.+.+. |. +.|.|++++..+...... .......|.|.+++.+|+|.|+|.|.|..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 6789999999999876 33 699999999876532111 01112359999999999999999999987654
Q ss_pred --eeeEEE--EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC---
Q psy14886 169 --ESKGRL--IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG--- 241 (505)
Q Consensus 169 --~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--- 241 (505)
...+.+ .+..+|.+....+.... ..|+.+.|.|.+.+..++.+.+.|+++|..+..... .......++
T Consensus 103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~----~~~~~~~~gt~~ 177 (218)
T 2rgs_A 103 PIERTISKIKGLVRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKD----TAPVLDSDGSYF 177 (218)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE----CCCEECTTSCEE
T ss_pred cceEEEeecCCCCCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEEECCEeccCcee----cccEECCCCCEE
Confidence 222211 22334444333222221 248899999999985444457889999988743210 000111222
Q ss_pred ---eEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 242 ---LLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 242 ---~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.|.+.....++.|.|+|.|.|....
T Consensus 178 ~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 178 IYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp EEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred EEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 3444444444689999999997654
|
| >1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=114.57 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=86.7
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.|++|... .+.|.+..| .+|.++.+...+.++|.|.|+++ .+ +.|++|+|+|+..+...|...... ..
T Consensus 1 G~g~~S~~~-~~~t~~~~P-~~P~~l~~~~~~~~sv~l~W~~p--~~--~~i~~Y~v~~~~~~~~~~~~~~~~-----~~ 69 (115)
T 1x5z_A 1 GSSGSSGDI-QVITQTGVP-GQPLNFKAEPESETSILLSWTPP--RS--DTIANYELVYKDGEHGEEQRITIE-----PG 69 (115)
T ss_dssp CCCCCCCCC-CCCCCSCCC-CCCEEEEEECSSSSEEEEEEECC--SC--CCCCEEEECBEESSSCCCBCCEEC-----SS
T ss_pred CCCCCCCCE-EEECCCCCC-CCCccCEeeeCCCCEEEEEEcCC--CC--CCccEEEEEEEeCCCCCceEEecC-----CC
Confidence 566666664 666766666 59999999988999999999984 22 389999999999876666322211 23
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.+.|.+|.|++.|.|+|+|+|..|.|++|+.+.+.|.+
T Consensus 70 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 108 (115)
T 1x5z_A 70 TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108 (115)
T ss_dssp SEEEEECCCTTCEEEECEEEECSSCEEEECCCEEEECCC
T ss_pred cEEEECCCCCCCeEEEEEEEECCCcccCCCcCEEEecCC
Confidence 678899999999999999999999999999999998864
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=128.37 Aligned_cols=167 Identities=18% Similarity=0.215 Sum_probs=108.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC-----CCeEEEEEC--CEE---ec---------CCCcEEEeeCC---CEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-----KPKFVWKKD--GNI---IG---------SGGRRKIFENG---NLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-----~~~i~W~~~--g~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|.+.+.+ .+.+.|+++ +.. +. ...++.....+ +|.|.+++.+|+
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 88 (247)
T 1svz_A 9 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL 88 (247)
T ss_dssp SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHC
Confidence 456789999999999998887 689999983 221 11 12344443322 599999999999
Q ss_pred EEEEEEEEcCCCcee-eeEEEEEEeCC------------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCC-
Q psy14886 155 GIYSCTATNVHGMDE-SKGRLIVLHGP------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG- 220 (505)
Q Consensus 155 G~y~C~~~~~~g~~~-~~~~l~v~~~p------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~- 220 (505)
|.|.|.+.+..+... ..+.|.|..++ ......+....+..|+.++|.|.+.+.+.+...+.|++++
T Consensus 89 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~ 168 (247)
T 1svz_A 89 GIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAP 168 (247)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred EEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCC
Confidence 999999998755422 23567776542 2222223345688999999999999875444567798852
Q ss_pred -EEec------CCC-C-----CcccCCeeee----cCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 221 -VRIG------NMD-L-----NELETPNINI----DGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 221 -~~~~------~~~-~-----~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
..+. ... . .......... ....|.|.+++.+|+|.|.|.|.|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 169 GGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp TCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 1110 000 0 0000111111 1248999999999999999999985
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=123.73 Aligned_cols=172 Identities=12% Similarity=0.216 Sum_probs=111.0
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEECC--E---Eec--------------CCCcEEEeeC-----CCEEEcCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--N---IIG--------------SGGRRKIFEN-----GNLLISPVSR 151 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~---~~~--------------~~~~~~~~~~-----~~l~i~~v~~ 151 (505)
.+.+.+|++++|.|.+.+.+ .+.+.|++.. . .+. ...++.+..+ .+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 35688999999999988765 4689999842 1 110 1245555432 2699999999
Q ss_pred CCCEEEEEEEEcCCC----c--eeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe-CC
Q psy14886 152 DDSGIYSCTATNVHG----M--DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NG 220 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g----~--~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~-~~ 220 (505)
+|+|.|.|.+.+..| . ....+.|.|.. +|.+....+ ...+..|+.++|.|.+.+..+..+.+.|++ +|
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g 167 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVS-CENSNPSSTVAVGCLAQDFLPDSITFSWKYKNN 167 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEEC-TTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTS
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecC-CcccCCCCcEEEEEEEEEEeCCCeEEEeEccCC
Confidence 999999999998653 1 11235777763 233322111 223457889999999998733345788999 87
Q ss_pred EEecCCC-CC-cccCCeeeecCCeEEEecCCC--CCCEEEEEEEEecCCcEEEEE
Q psy14886 221 VRIGNMD-LN-ELETPNINIDGGLLEITNASF--ADAGEYECVVKSTVGKISTKT 271 (505)
Q Consensus 221 ~~~~~~~-~~-~~~~~~~~~~~~~l~i~~~~~--~~~g~y~C~~~n~~g~~~~~~ 271 (505)
..+.... .. ......+ ...+.|.|..... +|.|.|+|.|.|..+.....+
T Consensus 168 ~~l~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 168 SDISSTRGFPSVLRGGKY-AATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp CBCSCEEECCCEEETTEE-EEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred CccceeEECCccccCCeE-EEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 7664300 00 0001111 1234677777765 788999999999988765543
|
| >2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=111.42 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc-CCCCcEEEEeeec--------CceeeEEEEcCCc
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEY--------GNVGIAVVRIPSE 455 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~l~~L 455 (505)
.||++|. +...+.++|+|.|++ +.+.+.+|++|.|+|+.. ....|........ .....+.+.+.+|
T Consensus 4 ~pP~~P~---v~~~~~~sv~L~W~~--P~~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L 78 (115)
T 2ic2_A 4 YPPTPPN---VTRLSDESVMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDL 78 (115)
T ss_dssp CCCCCCE---EEECC---EEEEEEE--ECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSC
T ss_pred CCCCcCE---eEEEeCCEEEEEEcC--CCCCCCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCC
Confidence 4566775 556788999999999 455568999999999998 4678986654331 1234567899999
Q ss_pred cceeeEEEEEEEecCCCCCCCCceEE
Q psy14886 456 FYYTEYEVKVQAINDVGPGPESEVVT 481 (505)
Q Consensus 456 ~p~~~Y~~~v~a~n~~G~g~~s~~~~ 481 (505)
.|++.|.|||.|+|.+|.|.+|....
T Consensus 79 ~p~t~Y~FRV~A~N~~G~~~pS~~S~ 104 (115)
T 2ic2_A 79 KPQHTYRFRILAVYSNNDNKESNTSA 104 (115)
T ss_dssp CSSEEEEEEEEEEETTSCEEECCCCC
T ss_pred CCCCEEEEEEEEEeCCCCCCCCCCCC
Confidence 99999999999999999865554433
|
| >2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-15 Score=114.04 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=77.8
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
+..|+.|+.++.....+.++|.|.|++ +.+.+++|.+|.|+|+..+...|...... ..+.+.|.+|.|++.|.
T Consensus 7 ~~~P~~P~~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~~~v~~L~p~t~Y~ 79 (110)
T 2db8_A 7 GPVPATPILQLEECCTHNNSATLSWKQ--PPLSTVPADGYILELDDGNGGQFREVYVG-----KETMCTVDGLHFNSTYN 79 (110)
T ss_dssp CCCCCCCBCCCCCCSCSSSEEEECCBC--CTTCCSCCSEEEEEECCSSSSCCEEEEEE-----SCSCEEEECCCSSSCCE
T ss_pred CCCCCCccccceeeccCCCEEEEEECC--CCCCCCCccEEEEEEEeCCCCceEEEEeC-----CcCEEEECCCCCCCEEE
Confidence 445555555665555678999999998 44556899999999998776778754421 23568899999999999
Q ss_pred EEEEEecCCCCCCCCceEEEeecce
Q psy14886 463 VKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|||+|+|.+|.|++|+.+.+.|.+.
T Consensus 80 frV~A~n~~G~s~~S~~~~~~T~~~ 104 (110)
T 2db8_A 80 ARVKAFNKTGVSPYSKTLVLQTSEG 104 (110)
T ss_dssp EEEEEECSSCBCCCCSCEECCCCCC
T ss_pred EEEEEEeCCcCCCCCCCEEEEcCCC
Confidence 9999999999999999999888753
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=128.50 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=107.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--E---Eec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--N---IIG---------SGGRRKIFEN---GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~---~~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.+.+.|.+.+.|+++. . .+. ...++..... .+|.|.+++.+|+|.|.|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 88 (242)
T 2znx_A 9 ATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC 88 (242)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence 4467899999999999999888899999842 1 111 1234444322 269999999999999999
Q ss_pred EEEcCCCcee-eeEEEEEEeCCe------------eeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC--CEEec
Q psy14886 160 TATNVHGMDE-SKGRLIVLHGPS------------YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIG 224 (505)
Q Consensus 160 ~~~~~~g~~~-~~~~l~v~~~p~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~--~~~~~ 224 (505)
.+.+..+... ....|.|..+|. .....+....+..|+.++|.|.+.+.+.+...+.|+++ +..+.
T Consensus 89 ~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~ 168 (242)
T 2znx_A 89 QQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLE 168 (242)
T ss_dssp EECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEE
T ss_pred eEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcE
Confidence 9998754322 235677765442 11122233458899999999999887643446779874 22110
Q ss_pred ------CCCCC---cccCCeeee------cCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 225 ------NMDLN---ELETPNINI------DGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 225 ------~~~~~---~~~~~~~~~------~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
..... .....++.. ....|.|.++..+|+|.|.|.|.|.
T Consensus 169 ~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 169 YMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred EEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 00000 000111111 1237999999999999999999873
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=130.65 Aligned_cols=175 Identities=15% Similarity=0.283 Sum_probs=110.9
Q ss_pred EEeeCCCeEEEEeecCCC--CCCeEEEEECC--E---Ee--------------cCCCcEEEeeCC-----CEEEcCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAA--PKPKFVWKKDG--N---II--------------GSGGRRKIFENG-----NLLISPVSRD 152 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~---~~--------------~~~~~~~~~~~~-----~l~i~~v~~~ 152 (505)
+.+.+|++++|.|.+.+. +...+.|++.. . .+ ...+++.+..+. +|.|.+++.+
T Consensus 10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (253)
T 3liz_H 10 GLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE 89 (253)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred EEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence 568899999999998763 35689999832 1 11 012344444322 3999999999
Q ss_pred CCEEEEEEEEcCC----CceeeeEEEEEE----eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEec
Q psy14886 153 DSGIYSCTATNVH----GMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224 (505)
Q Consensus 153 d~G~y~C~~~~~~----g~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~ 224 (505)
|+|.|.|.+.+.. ........|.|. ..|.+... .....+..|+.+.|.|.+.+..+..+.+.|.+++....
T Consensus 90 DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~ 168 (253)
T 3liz_H 90 DTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 168 (253)
T ss_dssp GCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE-CC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred hCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe-cCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecc
Confidence 9999999998752 222333567775 23333222 23334567999999999998544346888999876321
Q ss_pred CCCCC-cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEc
Q psy14886 225 NMDLN-ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276 (505)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~ 276 (505)
..... ..... .....+.|.|.....++ |.|+|.|.|..+.......+.+.
T Consensus 169 ~~~~~~~~~~g-~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 169 VHTFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEECCCEEETT-EEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred eEeCCccccCC-eEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 11000 00001 11223578888888888 99999999999887777766655
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=129.76 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=108.2
Q ss_pred EEeeCCCeEEEEeecCCCCC----CeEEEEEC--CEEe----c------------CCCcEEEee-----CCCEEEcCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAPK----PKFVWKKD--GNII----G------------SGGRRKIFE-----NGNLLISPVSR 151 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~----~~i~W~~~--g~~~----~------------~~~~~~~~~-----~~~l~i~~v~~ 151 (505)
+.+.+|++++|.|.+.+.+. +.+.|+++ +..+ . ...++.+.. +.+|.|.+++.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 89 (228)
T 3bae_H 10 GLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDT 89 (228)
T ss_dssp SEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCG
T ss_pred eeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCc
Confidence 46889999999999988764 79999884 2211 0 123454442 13699999999
Q ss_pred CCCEEEEEEEEcCCC------c---eeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEe
Q psy14886 152 DDSGIYSCTATNVHG------M---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 218 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g------~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~ 218 (505)
+|+|.|.|.+.+..| . ....+.|.|.. +|.+... ++...+..|+.+.|.|.+.+..+..+.+.|++
T Consensus 90 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~-~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~ 168 (228)
T 3bae_H 90 ADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPL-APVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 168 (228)
T ss_dssp GGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEE-CC-----CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred ccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEe-cccccccCCCCEEEEEEEccEeCCCEEEEEee
Confidence 999999999998764 1 11236777763 2333322 22234567899999999998633235788998
Q ss_pred CCEEecCCCCC-cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEE
Q psy14886 219 NGVRIGNMDLN-ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272 (505)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~ 272 (505)
++..+...... .... ......+.|.|.....++ |.|+|.|.|..|.......
T Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 169 GSLSSGVHTFPAVLQS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK 221 (228)
T ss_dssp GTCCTTEEEEEEEEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CCcccCceEcCceeCC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence 87542110000 0000 111123468888887766 9999999999887654433
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=128.54 Aligned_cols=168 Identities=15% Similarity=0.280 Sum_probs=108.7
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEe-----------------cCCCcEEEeeC-----CCEEEcCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNII-----------------GSGGRRKIFEN-----GNLLISPVSRD 152 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~-----------------~~~~~~~~~~~-----~~l~i~~v~~~ 152 (505)
..+.+|++++|.|.+.+.+ .+.+.|+++ +..+ ....++.+..+ .+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (225)
T 1op3_H 10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE 89 (225)
T ss_dssp EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh
Confidence 5688999999999998776 679999984 2211 01245555432 36999999999
Q ss_pred CCEEEEEEEEcCCC-----c---eeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCC
Q psy14886 153 DSGIYSCTATNVHG-----M---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220 (505)
Q Consensus 153 d~G~y~C~~~~~~g-----~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~ 220 (505)
|+|.|.|.+.+..| . ....+.|.|.. +|.+....+.. .+..|+.+.|.|.+.+..+..+.+.|++++
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 168 (225)
T 1op3_H 90 DTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGA 168 (225)
T ss_dssp GCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECCTTS
T ss_pred hCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEecCC
Confidence 99999999998764 2 11346777765 23333222222 245789999999999873333578899987
Q ss_pred EEecCCCCCcc-cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 221 VRIGNMDLNEL-ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 221 ~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
..+........ .........+.|.|.....++ |.|+|.|.|..+...
T Consensus 169 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 169 LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp CCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred CcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 65321000000 000011122467888887778 999999999776543
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=133.81 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=101.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEE---CcCCCC-C----CCCCC-cEEEECCe---EEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GEL---LNSETL-P----LEDQD-RYFIQDNV---LTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~---l~~~~~-~----~~~~~-~~~~~~~~---L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|.+.+.+...+.|+|. +.. +..... . ....+ |+.+.... |.|.+++ .+|+|.|+|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~-~~DsG~Y~C 91 (253)
T 3to4_D 13 VPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN-MSQGRTLYC 91 (253)
T ss_dssp EESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEES-CSSCEEEEE
T ss_pred EeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCC-hhhCeEEEE
Confidence 35899999999988878889999982 111 000000 0 00112 66654322 9999999 999999999
Q ss_pred EEEcccC----c--eEeeEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCC
Q psy14886 67 RAKNQLK----T--RYSSAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSG 133 (505)
Q Consensus 67 ~~~~~~~----~--~~~~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~ 133 (505)
.+.+..+ . ......|.|.. .+|.+.+.. +....+..|+.++|.|.+.+ .|.+ .+.|+++|..+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~ 170 (253)
T 3to4_D 92 TSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 170 (253)
T ss_dssp EEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEE-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred EEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeC-CChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCc
Confidence 9986543 1 11234666663 222222111 01111234689999999988 5666 89999999988643
Q ss_pred CcEEEe--------eCC------CEEEcCCCCCC-CEEEEEEEEcCC
Q psy14886 134 GRRKIF--------ENG------NLLISPVSRDD-SGIYSCTATNVH 165 (505)
Q Consensus 134 ~~~~~~--------~~~------~l~i~~v~~~d-~G~y~C~~~~~~ 165 (505)
...... .++ .|.|......| .|.|+|.|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 171 VSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp EEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred eecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 211100 122 36666666666 789999999864
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-15 Score=136.14 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=102.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc---CC-CC-CC---CCCC-cEEEE-----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN---SE-TL-PL---EDQD-RYFIQ-----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~---~~-~~-~~---~~~~-~~~~~-----~~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|.+.+ +.+.+.|+|. +.... .. .. .. ...+ |+.+. +.+|.|.+++ .+|+|.|
T Consensus 39 v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~~D~G~Y 116 (270)
T 3qib_D 39 KGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSE-AGDSALY 116 (270)
T ss_dssp EETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCC-GGGCEEE
T ss_pred EcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCC-HhHCeEE
Confidence 358999999999865 6789999992 11100 00 00 00 0001 56553 3589999999 9999999
Q ss_pred EEEEEcccC----ceEeeEEEEEEec-----CCCccCCCCCceEEeeCCCeEEEEeecCC-CCCC-eEEEEECCEEecCC
Q psy14886 65 QCRAKNQLK----TRYSSAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEA-APKP-KFVWKKDGNIIGSG 133 (505)
Q Consensus 65 ~C~~~~~~~----~~~~~~~l~v~~~-----~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~-~i~W~~~g~~~~~~ 133 (505)
.|.+.+... .....+.|.|... +|.+.+.. +....+..|+.++|.|.+.+ .|.+ .+.|+++|..+..+
T Consensus 117 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 195 (270)
T 3qib_D 117 LCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 195 (270)
T ss_dssp EEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEE-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred EEEEecCCCccceEECCcEEEEEccccccccCCceEEEC-CCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCC
Confidence 999986432 1223456777641 22222111 01112345999999999988 5656 89999999988653
Q ss_pred CcEEE--------eeCC------CEEEcCCCCCC-CEEEEEEEEcCCCce
Q psy14886 134 GRRKI--------FENG------NLLISPVSRDD-SGIYSCTATNVHGMD 168 (505)
Q Consensus 134 ~~~~~--------~~~~------~l~i~~v~~~d-~G~y~C~~~~~~g~~ 168 (505)
..... ..++ .|.|.....+| +|.|+|.|.+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 196 VCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp EEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred cccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence 21110 0122 36677766666 999999999865443
|
| >1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-15 Score=111.66 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=78.3
Q ss_pred ccCCCCCCCCCCceeeeeccccccEEEEEEeCCcccc---CCC-CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCC
Q psy14886 379 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQ---NAP-NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 454 (505)
Q Consensus 379 ~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~---~~~-i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 454 (505)
+......|+.+|..+.+...+.++|.|.|++| .+++ +.+ |++|.|+....+...|...... ..+.+.+.+
T Consensus 8 ~~~~~~~pp~~P~~p~v~~vt~~Sv~LsW~~p-~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~-----~~t~~~v~g 81 (120)
T 1wfu_A 8 MEPHKVVPLSKPHPPVVGKVTHHSIELYWDLE-QKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTG-----YATRHVVEG 81 (120)
T ss_dssp CCCTTCCCCCCCCCCBCCCEETTEEEEECTTT-SCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEE-----SCSEEEEES
T ss_pred EEEEeeCCCCCCCCceeceEECCEEEEEECCC-ccCCccCCCCceEEEEEEEecCCCCceEEEecC-----CccEEEECC
Confidence 34555666667777777778899999999983 3333 334 9999999433346677755432 124688999
Q ss_pred ccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 455 EFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 455 L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|.|++.|.|||+|+|.+|.|++|+.+.+.|.+.
T Consensus 82 L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~ 114 (120)
T 1wfu_A 82 LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114 (120)
T ss_dssp CCTTCEEEEEEEEECSSSCEEECCCEEEECCCC
T ss_pred CCCCCEEEEEEEEECCCCCCCCCccEeeEcCCC
Confidence 999999999999999999999999999988754
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=123.19 Aligned_cols=168 Identities=15% Similarity=0.250 Sum_probs=110.1
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEECC--E---Eec--------------CCCcEEEeeC-----CCEEEcCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--N---IIG--------------SGGRRKIFEN-----GNLLISPVSR 151 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~---~~~--------------~~~~~~~~~~-----~~l~i~~v~~ 151 (505)
.+.+.+|++++|.|.+.+.+ .+.+.|++.. . .+. ...++.+..+ .+|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (220)
T 2fbj_H 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence 36688999999999998765 5689999842 1 110 1245555432 2699999999
Q ss_pred CCCEEEEEEEEcCCCc---eeeeEEEEEEeC----CeeeeeCCCceEEEeeccEEEEEEeeecCCC-CeEEEEEeCCEEe
Q psy14886 152 DDSGIYSCTATNVHGM---DESKGRLIVLHG----PSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVRI 223 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~---~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~~~ 223 (505)
+|+|.|.|.+.+..+. ....+.|.|... |.+... + ...+..|+.++|.|.+.+..+. .+.+.|++++..+
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~-~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPL-T-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI 166 (220)
T ss_dssp GGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEE-C-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred hhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEe-e-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence 9999999999987553 123357777642 222222 2 2234578999999999987332 4688899987654
Q ss_pred cCCCCC--cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 224 GNMDLN--ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 224 ~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
...... ......+ ...+.|.|......|.|.|+|.|.|..|...
T Consensus 167 ~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 167 TTVNFPPALASGGRY-TMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEECCCEECSSSCE-EEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEecCceECCCCCE-EEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 110000 0000111 1123577887778889999999999988754
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=126.21 Aligned_cols=180 Identities=17% Similarity=0.221 Sum_probs=111.2
Q ss_pred EEeeCCCeEEEEeecCCC--CCCeEEEEECC--E---Ee-------------cCCCcEEEeeCC-----CEEEcCCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAA--PKPKFVWKKDG--N---II-------------GSGGRRKIFENG-----NLLISPVSRDD 153 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~---~~-------------~~~~~~~~~~~~-----~l~i~~v~~~d 153 (505)
..+.+|++++|.|.+.+. +.+.+.|++.. . .+ ....++.+..+. +|.|.+++.+|
T Consensus 18 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 97 (257)
T 3gkz_A 18 SLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED 97 (257)
T ss_dssp SEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence 458899999999998874 46799999832 1 11 012344444322 59999999999
Q ss_pred CEEEEEEEEcCCC----ceeeeEEEEEEeC-------------CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEE
Q psy14886 154 SGIYSCTATNVHG----MDESKGRLIVLHG-------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 216 (505)
Q Consensus 154 ~G~y~C~~~~~~g----~~~~~~~l~v~~~-------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w 216 (505)
+|.|.|.+.+..+ .......|.|... +..+...+....+..|+.++|.|.+.+.+.+ ..+.|
T Consensus 98 sG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~v~W 176 (257)
T 3gkz_A 98 TATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS-SHLYW 176 (257)
T ss_dssp CEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG-GGEEE
T ss_pred CEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc-eEEEE
Confidence 9999999998622 1223356777554 2233344556778899999999999887654 24568
Q ss_pred EeC--CEEec---CCCCC----cccCCeeee--cCCeEEEecCCCCCCEEEEEEEEecCCcE-EEEEEEEEcCCC
Q psy14886 217 THN--GVRIG---NMDLN----ELETPNINI--DGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPP 279 (505)
Q Consensus 217 ~~~--~~~~~---~~~~~----~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n~~g~~-~~~~~l~v~~~p 279 (505)
+++ +.... ..... ......... ....|.|.++..+|+|.|.|.|.+..... ..-..|.|...|
T Consensus 177 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~ 251 (257)
T 3gkz_A 177 YQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP 251 (257)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred EEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence 763 22111 00000 000011111 22369999999999999999998754332 223456665443
|
| >1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=111.91 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=77.6
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCC----CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccce
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAP----NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY 458 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~----i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 458 (505)
+..|+.+|.++++...+.++|.|+|.++. ..++. +.+|.|+|+......+...... .....+.|.+|+|+
T Consensus 5 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~--~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~----~~~~~~~i~gL~P~ 78 (113)
T 1x5j_A 5 SSGPMMPPVGVQASILSHDTIRITWADNS--LPKHQKITDSRYYTVRWKTNIPANTKYKNAN----ATTLSYLVTGLKPN 78 (113)
T ss_dssp SCCCCCCCEEEEEEEEETTEEEEEEECTT--SCSSSCCCSSCEEEEEECBSSSSSCCCEECC----BCSSEEEEESCCTT
T ss_pred cCCCCCCCcceEEEEecCCEEEEEecCCC--CccccccCcCceEEEEEEECCCCCeEEEEEe----cCcCEEEeCCCCCC
Confidence 46778899999999999999999999843 33344 4499999998433333322222 23457899999999
Q ss_pred eeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 459 TEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|.|.|+|+|+|.+|.|++|+.+.++|.+.
T Consensus 79 T~Y~f~V~A~~~~G~g~~S~~v~~~T~~~ 107 (113)
T 1x5j_A 79 TLYEFSVMVTKGRRSSTWSMTAHGTTFEL 107 (113)
T ss_dssp CEECCEEEEECSSCBCCCCCCCCEECCCS
T ss_pred cEEEEEEEEecCCccCCCcccEEeeccCC
Confidence 99999999999999999999999988754
|
| >2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-15 Score=112.76 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=77.1
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
...+|.+|.++.+...+.+++.|.|+++ ..+++.+|++|.|+|+..+...|...... ...+.+.+.+|.|++.|.
T Consensus 14 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p-~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~----~~~~~~~v~~L~p~t~Y~ 88 (120)
T 2yux_A 14 IIDRPGPPQIVKIEDVWGENVALTWTPP-KDDGNAAITGYTIQKADKKSMEWFTVIEH----YHRTSATITELVIGNEYY 88 (120)
T ss_dssp CCCCCCCCSCEEEEEEETTEEEEEECCC-SCCCSSCCCCCCEEEEETTTCCCEEEESS----CCSSCCEECCCCSSEEEE
T ss_pred eecCCCcCCCCEEEEecCCEEEEEEcCC-CcCCCCCceEEEEEEEECCCCceEEeeec----CCcCEEEECCCCCCCEEE
Confidence 3456679999999888899999999983 45566789999999999888888865422 234578899999999999
Q ss_pred EEEEEecCCCCCCCCceE
Q psy14886 463 VKVQAINDVGPGPESEVV 480 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~ 480 (505)
|||.|+|.+|.|++|+..
T Consensus 89 frV~A~n~~G~s~~S~~s 106 (120)
T 2yux_A 89 FRVFSENMCGLSEDATMT 106 (120)
T ss_dssp EEECCCSSSCSCSSCEEC
T ss_pred EEEEEeeCCcCCCCccCc
Confidence 999999999999999754
|
| >2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-15 Score=112.03 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=79.1
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
..+|.+|.++.+...+.++|.|.|++ |..+++.+|++|.|+|+..+...|...... ....+.+.+.+|.|++.|.|
T Consensus 5 ~~~P~~P~~l~~~~~~~~sv~l~W~~-p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~---~~~~~~~~v~~L~p~t~Y~f 80 (110)
T 2yuw_A 5 SSGTSPPTLLTVDSVTDTTVTMRWRP-PDHIGAAGLDGYVLEYCFEGTEDWIVANKD---LIDKTKFTITGLPTDAKIFV 80 (110)
T ss_dssp CCCSCCCEEEEEEEECSSCEEEEEEC-CSSCCSSCEEEEEEEEEETTCSSEEECCSS---CCCSSEEEECSCCTTCEEEE
T ss_pred CCCCCCCCccEEEeccCCeEEEEECC-CCCCCCCCccEEEEEEEECCCccceEeccc---cCccCEEEECCCCCCCEEEE
Confidence 34567899999988889999999998 344566789999999999887788754322 12346789999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeec
Q psy14886 464 KVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
||+|+|.+|.|++|+.....+.
T Consensus 81 rV~A~n~~G~s~~S~~~~~v~~ 102 (110)
T 2yuw_A 81 RVKAVNAAGASEPKYYSQPILV 102 (110)
T ss_dssp EEEEEETTEECCCEECSSCEEC
T ss_pred EEEEEcCCcCCCCcCCCCCEEe
Confidence 9999999999999987654443
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-15 Score=113.34 Aligned_cols=118 Identities=29% Similarity=0.458 Sum_probs=96.2
Q ss_pred EEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCC--CCCeEEeeeccccceeeeecCceeeE
Q psy14886 269 TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEAS 346 (505)
Q Consensus 269 ~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~ 346 (505)
..+.+.+..+|.+|.++.+.....+++.|+|.++.+++.++.+|.|+|+... ...|....... +.....
T Consensus 7 ~~~~~~v~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~---------~~~~~~ 77 (127)
T 1uey_A 7 GPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS---------GTQTTA 77 (127)
T ss_dssp CCCCCCCCCSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEE---------SSCCEE
T ss_pred EEEEEEeecCCcCCCCcEEEEccCCEEEEEEECCCCCCCCceEEEEEEEECCCCCCccEEEeeeC---------CCceEE
Confidence 4456667889999999999889999999999998778899999999998764 46787653221 222335
Q ss_pred EeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeee
Q psy14886 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396 (505)
Q Consensus 347 ~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~ 396 (505)
+.+ |.+++.|.|||+|.|..|.|.+|.....+.|.+..|..+|.++++.
T Consensus 78 i~~-L~p~t~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P~~~P~~v~~~ 126 (127)
T 1uey_A 78 QLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPSS 126 (127)
T ss_dssp EEC-CCTTCEECCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCCCCC
T ss_pred Eec-CCCCCEEEEEEEEEeCCccCCccccccceEcCCCCCCCCCceeEec
Confidence 555 9999999999999999999999988667899999999999988764
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=126.95 Aligned_cols=177 Identities=18% Similarity=0.294 Sum_probs=114.1
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEECC--EEec-----------------CCCcEEEeeC-----CCEEEcCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKDG--NIIG-----------------SGGRRKIFEN-----GNLLISPVSR 151 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g--~~~~-----------------~~~~~~~~~~-----~~l~i~~v~~ 151 (505)
...+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ...++.+..+ .+|.|.+++.
T Consensus 35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 114 (282)
T 1qok_A 35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS 114 (282)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence 45789999999999998775 5799999853 1110 1245544431 3699999999
Q ss_pred CCCEEEEEEEEcCCCc---e--eeeEEEEEEeCC--------------eeeeeCCCceEEEeeccEEEEEEeeecCCCCe
Q psy14886 152 DDSGIYSCTATNVHGM---D--ESKGRLIVLHGP--------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDV 212 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~---~--~~~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 212 (505)
+|+|.|.|.+.+..|. . ...+.|.|...| ..+...+....+..|+.++|.|.+.+.+ +
T Consensus 115 ~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~-- 191 (282)
T 1qok_A 115 EDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S-- 191 (282)
T ss_dssp GGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S--
T ss_pred hhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c--
Confidence 9999999999998661 1 123567776543 2223334566788999999999998887 5
Q ss_pred EEEEEe--CCEEecC-----CCCCcccCCee----eecCCeEEEecCCCCCCEEEEEEEEecCCc-EEEEEEEEEcC
Q psy14886 213 AYIWTH--NGVRIGN-----MDLNELETPNI----NIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIVEG 277 (505)
Q Consensus 213 ~~~w~~--~~~~~~~-----~~~~~~~~~~~----~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~-~~~~~~l~v~~ 277 (505)
.+.|++ ++..+.. .........++ ......|.|.++..+|+|.|.|.|.+..+. ......|.|..
T Consensus 192 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 192 YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 456988 4443210 00000000111 112347999999999999999999875432 22345566654
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=121.90 Aligned_cols=175 Identities=15% Similarity=0.263 Sum_probs=108.5
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CE---Eec-------------CCCcEEEeeC---C--CEEEcCCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GN---IIG-------------SGGRRKIFEN---G--NLLISPVSRDD 153 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~---~~~-------------~~~~~~~~~~---~--~l~i~~v~~~d 153 (505)
+.+.+|++++|.|.+.+.+ ...+.|++. +. .+. ...++.+..+ + +|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (232)
T 1dn0_B 10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD 89 (232)
T ss_dssp CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence 4688999999999987764 568999984 22 110 1245555432 1 69999999999
Q ss_pred CEEEEEEEEcCC--Cc----eeeeEEEEEEeC----CeeeeeCCCceEEEee-ccEEEEEEeeecCCCCeEEEEEe-CCE
Q psy14886 154 SGIYSCTATNVH--GM----DESKGRLIVLHG----PSYYEQLPPKITIAAH-RNLQLRCSAHTEELLDVAYIWTH-NGV 221 (505)
Q Consensus 154 ~G~y~C~~~~~~--g~----~~~~~~l~v~~~----p~~~~~~~~~~~~~~g-~~~~l~C~~~~~~~~~~~~~w~~-~~~ 221 (505)
+|.|.|.+.+.. +. ......|.|... |.+....+ ...+..| +.++|.|.+.+..+..+.+.|++ +|.
T Consensus 90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p-~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (232)
T 1dn0_B 90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVS-CENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS 168 (232)
T ss_dssp CEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEEC-C------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred CEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecc-ccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence 999999998422 11 123357777642 33322111 2234467 89999999998633335788999 887
Q ss_pred EecCCC-C-CcccCCeeeecCCeEEEecCCC--CCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 222 RIGNMD-L-NELETPNINIDGGLLEITNASF--ADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 222 ~~~~~~-~-~~~~~~~~~~~~~~l~i~~~~~--~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
.+.... . ...... .....+.|.|..... +|.|.|+|.|.|..+.......+.+
T Consensus 169 ~l~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~ 225 (232)
T 1dn0_B 169 DISSTRGFPSVLRGG-KYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPV 225 (232)
T ss_dssp EECCEEECCCEEETT-EEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC
T ss_pred ceeeEEECCccccCC-cEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCC
Confidence 764300 0 000011 111234677877776 7899999999999988665555544
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-15 Score=129.42 Aligned_cols=160 Identities=18% Similarity=0.256 Sum_probs=97.9
Q ss_pred eCCCeEEEEeecCCCC----CCeEEEEECCEEecCCC--cEEEeeCCCEEEcC---CCC---CCCEEEEEEEEcCCCcee
Q psy14886 102 GEGGNVTIFCNPEAAP----KPKFVWKKDGNIIGSGG--RRKIFENGNLLISP---VSR---DDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 102 ~~g~~v~l~C~~~~~p----~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~---v~~---~d~G~y~C~~~~~~g~~~ 169 (505)
.+|+++.|.|.+.|.+ ...|.|++++..+.... ......++.+.+.. +.. .|+|.|+|.|.|..+...
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 6899999999998764 34999999998775421 11223345554432 233 449999999999877543
Q ss_pred eeEEE----EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC----
Q psy14886 170 SKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG---- 241 (505)
Q Consensus 170 ~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~---- 241 (505)
....+ .+..+|.+....+....+ .+..+.|.|.+.+.+++.+.+.|+++|..+..... .......++
T Consensus 96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~----~~~~~~~~gt~~~ 170 (207)
T 1l6x_A 96 IEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT----TPPVLDSDGSFFL 170 (207)
T ss_dssp EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE----CCCEECTTSCEEE
T ss_pred eEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCccc----cCceECCCCCEEE
Confidence 32233 222344433332222222 34559999999997555568889999988753210 001111122
Q ss_pred --eEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 242 --LLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 242 --~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.|.+.....++.|.|+|.|.|....
T Consensus 171 ~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 171 YSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 3444444445789999999997653
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-15 Score=130.55 Aligned_cols=165 Identities=16% Similarity=0.256 Sum_probs=104.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--E--E-CcC--CCCC---CCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--E--L-LNS--ETLP---LEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~--~-l~~--~~~~---~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++++|.|.+. .+.+.+.|+|+. . . +.. .... ....+|+.+. ..+|.|.+++ .+|+|.|.
T Consensus 15 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~-~~D~G~Y~ 92 (252)
T 1oga_E 15 RKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ-KNPTAFYL 92 (252)
T ss_dssp EETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC-SCCCEEEE
T ss_pred EcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCC-hhhCEEEE
Confidence 46899999999995 457899999953 1 1 100 0000 0123677664 2589999999 99999999
Q ss_pred EEEEccc---CceEeeEEEEEEe-----cCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCCCc
Q psy14886 66 CRAKNQL---KTRYSSAQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSGGR 135 (505)
Q Consensus 66 C~~~~~~---~~~~~~~~l~v~~-----~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~~~ 135 (505)
|.+.+.. ........|.|.. .+|.+.+.. +....+.+|+.++|.|.+.+. |. +.+.|+++|..+.....
T Consensus 93 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~ 171 (252)
T 1oga_E 93 CASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVS 171 (252)
T ss_dssp EEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEE
T ss_pred EEEecCCccceeECCCEEEEEecccCCCCCCeEEEEC-CChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcc
Confidence 9998752 1111234566663 233332221 111123468999999999885 65 49999999998765322
Q ss_pred EE------E--eeCCC------EEEcCCCCC-CCEEEEEEEEcCCCce
Q psy14886 136 RK------I--FENGN------LLISPVSRD-DSGIYSCTATNVHGMD 168 (505)
Q Consensus 136 ~~------~--~~~~~------l~i~~v~~~-d~G~y~C~~~~~~g~~ 168 (505)
.. . ..+++ |.|...... |.|.|+|.+.|.....
T Consensus 172 ~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 172 TDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp ECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred cccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 11 0 12233 666655543 6789999999875443
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=127.00 Aligned_cols=169 Identities=15% Similarity=0.241 Sum_probs=108.9
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEe------c-----------CCCcEEEeeC-----CCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNII------G-----------SGGRRKIFEN-----GNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~------~-----------~~~~~~~~~~-----~~l~i~~v~ 150 (505)
....+.+|++++|.|.+.+.+ .+.+.|+++ +..+ . ...++.+..+ .+|.|.+++
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 93 (261)
T 2xqy_G 14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT 93 (261)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence 346789999999999998776 579999985 2211 0 1235554432 369999999
Q ss_pred CCCCEEEEEEEEcCCCce---eeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 151 RDDSGIYSCTATNVHGMD---ESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~---~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
.+|+|.|.|.+.+..+.. ...+.|.|.. +|.+....+ ...+..|+.++|.|.+.+..+..+.+.|++++..+
T Consensus 94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p-~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~ 172 (261)
T 2xqy_G 94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAP-VCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS 172 (261)
T ss_dssp GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC-CCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCC-CccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence 999999999999864311 1235677764 233332222 23456789999999999863334588899987653
Q ss_pred cCCCC-CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 224 GNMDL-NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 224 ~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
..... ..... ......+.|.|.....++ |.|+|.|.|......
T Consensus 173 ~~~~~~~~~~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 173 GVHTFPAVLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK 216 (261)
T ss_dssp TEEECCCEEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred ceEecCceecC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCCcc
Confidence 21100 00000 111223578888888777 999999999766543
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=127.80 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=102.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc------CCC--CCCCCCCcEEEEC-----CeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN------SET--LPLEDQDRYFIQD-----NVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~------~~~--~~~~~~~~~~~~~-----~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++++|.|.+. .+.+.+.|+|++ ..+. ... ......+|+.+.. .+|.|.+++ .+|+|.|.
T Consensus 11 v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~-~~D~G~Y~ 88 (238)
T 1bec_A 11 AVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT-PSQTSVYF 88 (238)
T ss_dssp EETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC-GGGCEEEE
T ss_pred EeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC-cccCEEEE
Confidence 46899999999995 467899999953 1110 000 0001235665532 489999999 99999999
Q ss_pred EEEEcccC---c-e-EeeEEEEEEec-----CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC-eEEEEECCEEecCC
Q psy14886 66 CRAKNQLK---T-R-YSSAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP-KFVWKKDGNIIGSG 133 (505)
Q Consensus 66 C~~~~~~~---~-~-~~~~~l~v~~~-----~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~-~i~W~~~g~~~~~~ 133 (505)
|.+.+..+ . . .....|.|... +|.+.... +....+.+|+.++|.|.+.|. |.+ .+.|+++|..+..+
T Consensus 89 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~ 167 (238)
T 1bec_A 89 CASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFE-PSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167 (238)
T ss_dssp EEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEEC-CCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTT
T ss_pred EEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEEC-CChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCCc
Confidence 99998632 1 1 12356777641 34333221 111224579999999999886 654 99999999988654
Q ss_pred CcE----EEeeCCCEE------EcCCCCC-CCEEEEEEEEcCCC
Q psy14886 134 GRR----KIFENGNLL------ISPVSRD-DSGIYSCTATNVHG 166 (505)
Q Consensus 134 ~~~----~~~~~~~l~------i~~v~~~-d~G~y~C~~~~~~g 166 (505)
... ....++++. |...... +.|.|+|.|.|...
T Consensus 168 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 168 VSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp EEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred eecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 221 112344433 3333333 36889999998643
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=109.70 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=66.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--EC--CeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QD--NVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|++++|.|.+.|.|.+.|+|+|||..|.. ..++.+ .+ .+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 25 v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~-------~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~ 96 (107)
T 3knb_B 25 VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA-------SERLSFPADGAEHGLLLTAAL-PTDAGVYVCRARNAAGEAY 96 (107)
T ss_dssp EETTSCEEEEEEEEEESCCEEEEEETTEECCC-------CSSEECCEETTEEEEEESSCC-GGGCEEEEEEEEETTEEEE
T ss_pred EeCCCcEEEEEEEEEecCCEEEEEECcccccc-------eeeEEEeecCceEEEEEecCC-hhhCEEEEEEEEECCCEEE
Confidence 46899999999999999999999999999973 345544 22 379999999 9999999999999999988
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 97 ~~~~l~V~~ 105 (107)
T 3knb_B 97 AAAAVTVLE 105 (107)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEc
Confidence 889999885
|
| >1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-15 Score=111.94 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=78.6
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
+..+|.+|.++++...+.++|.|.|++ |..+++.+|++|.|+|+..+...|...... ....+.+.+.+|.|++.|.
T Consensus 5 p~~~P~~P~~l~~~~~~~~sv~l~W~~-p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~---~~~~~~~~v~~L~p~t~Y~ 80 (111)
T 1x5y_A 5 SSGPTSAPQHLTVEDVTDTTTTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVPANKE---PVERCGFTVKDLPTGARIL 80 (111)
T ss_dssp CCSCCCCCEEEEEEEECSSEEEEEEEC-CSCCCSSCCCEEEEEEEETTCCCCEESSSS---CBSSSEEEEECCCTTCCEE
T ss_pred CCCCCcCCCCCEEEeccCCEEEEEECC-CCcCCCCcccEEEEEEEECCCCceEEcccc---CCcccEEEECCCCCCCEEE
Confidence 445667899999988889999999998 344555679999999999887788743321 1234678899999999999
Q ss_pred EEEEEecCCCCCCCCceEEEee
Q psy14886 463 VKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t 484 (505)
|||+|+|.+|.|++|+.....+
T Consensus 81 frV~A~n~~G~s~~S~~~~~v~ 102 (111)
T 1x5y_A 81 FRVVGVNIAGRSEPATLLQPVT 102 (111)
T ss_dssp EEEEEEETTEECCCCCCSSCBC
T ss_pred EEEEEEcCCcCCCCccCCCCEE
Confidence 9999999999999998775443
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=125.48 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=109.5
Q ss_pred ceEEeeCCCeEEEEeecCCC--CCCeEEEEECC--EE---ec--------------CCCcEEEee-----CCCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA--PKPKFVWKKDG--NI---IG--------------SGGRRKIFE-----NGNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~~---~~--------------~~~~~~~~~-----~~~l~i~~v~ 150 (505)
..+.+.+|++++|.|.+.+. +...+.|+++. .. +. ...++.+.. +.+|.|.+++
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (242)
T 1hxm_B 9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE 88 (242)
T ss_dssp SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred ceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCC
Confidence 45778999999999998775 56799999832 21 10 234555442 2359999999
Q ss_pred CCCCEEEEEEEEcCCC-c------eeeeEEEEEEeC-------CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEE
Q psy14886 151 RDDSGIYSCTATNVHG-M------DESKGRLIVLHG-------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 216 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g-~------~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w 216 (505)
.+|+|.|.|.+.+... . ......|.|... |......+....+..|+.+.|.|.+.+..+..+.+.|
T Consensus 89 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 168 (242)
T 1hxm_B 89 KQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHW 168 (242)
T ss_dssp GGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEE
T ss_pred cccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEE
Confidence 9999999999987631 1 112357777653 2222221222334468899999999986433468889
Q ss_pred EeCCE-EecCCC-CCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEE
Q psy14886 217 THNGV-RIGNMD-LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275 (505)
Q Consensus 217 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v 275 (505)
.+++. .+.... .............+.|.|..... + |.|+|.|.|..+.......+.+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 169 EEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp EESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred EcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 99886 443211 00000000111123577766553 3 9999999999887543333433
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=135.02 Aligned_cols=161 Identities=12% Similarity=0.182 Sum_probs=105.2
Q ss_pred CCCCceEEEEEEecc---C-CCeEEEEECCEECcCCC--CCC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 2 DNQADLTWTCEAFGV---P-DVTYSWFRNGELLNSET--LPL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~---p-~~~~~W~~~~~~l~~~~--~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+|++++|.|.+.+. | ...|.|+|++..+.... ... ...+.+ ...+.|.|..++ .+|+|.|+|.+.+..+.
T Consensus 181 ~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~s~L~I~~~~-~~D~g~Y~C~~~~~~~~ 258 (376)
T 2aty_A 181 TITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTF-RSVSELPIMHQD-WLNGKEFKCRVNSAAFP 258 (376)
T ss_pred eeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcE-EEEEEEEechHh-ccCCCEEEEEEecCCCC
Confidence 579999999999886 3 25799999987653211 000 111222 234579999999 99999999999987654
Q ss_pred eEeeEEEEE---EecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C-CCeEEEEECCEEecCCCcE--EEeeCCC----
Q psy14886 75 RYSSAQLRV---LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGGRR--KIFENGN---- 143 (505)
Q Consensus 75 ~~~~~~l~v---~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~~--~~~~~~~---- 143 (505)
......+.+ ...+|.+.+.+.. ....+|+.++|.|.+.|. | .+.|+|+++|..+...... ....+++
T Consensus 259 ~~~~~~v~~~~~~~~~P~v~v~~~~--~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~ 336 (376)
T 2aty_A 259 APIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVY 336 (376)
T ss_pred CceEEEEcCCCCCCcCCeEEeeCCC--HHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEE
Confidence 332222211 1135555544422 223458899999999986 3 4599999999887432111 1122332
Q ss_pred --EEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 144 --LLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 144 --l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
|.|.....+|.|.|+|.|.+..-
T Consensus 337 s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 337 SKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred EEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 66777667789999999987643
|
| >2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=108.55 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
|.++.|..|+ +.+...+.++|.|.|++ +.+.++.|++|+|+|+..+...|....... ..+.+.|.+|.|++.
T Consensus 3 T~~~~P~~p~--~~v~~~~~~sv~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~ 74 (107)
T 2dn7_A 3 SGSSGPGRPT--MMISTTAMNTALLQWHP--PKELPGELLGYRLQYCRADEARPNTIDFGK----DDQHFTVTGLHKGTT 74 (107)
T ss_dssp TCCCCCCCCE--EEEEECSTTEEEEEEEC--CSSCSSCCCEEEEEEEETTCSSCEEEEEET----TCCEEEEECCCTTCE
T ss_pred CCCCCCCCCc--EeEEecCCCEEEEEECC--CCCCCCceeEEEEEEEECCCCCCEEEEeCC----CccEEEeCCCCCCCE
Confidence 4455665444 55555688999999998 457889999999999998877887654332 345788999999999
Q ss_pred EEEEEEEecCCCCCCCCceEEEeec
Q psy14886 461 YEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 461 Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|.|+|+|+|.+|.|++|.. .+.|.
T Consensus 75 Y~~~V~A~n~~G~g~~s~~-~~~T~ 98 (107)
T 2dn7_A 75 YIFRLAAKNRAGLGEEFEK-EIRTP 98 (107)
T ss_dssp EEEEEEEEETTEEEEEEEE-EEECC
T ss_pred EEEEEEEEcCCcccCCeee-EEeCC
Confidence 9999999999999999984 45554
|
| >2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.8e-15 Score=111.74 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=79.6
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.+.|.++.| .+|.++.+...+.++|.|.|+++. .. |.|++|+|+|+..+...|....... ...+.+.|.+|.|
T Consensus 10 ~~~t~~~~P-~~P~~l~~~~~~~~sv~l~W~~p~--~~-g~i~~Y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p 82 (118)
T 2yrz_A 10 DSRLTAGVP-DTPTRLVFSALGPTSLRVSWQEPR--CE-RPLQGYSVEYQLLNGGELHRLNIPN---PAQTSVVVEDLLP 82 (118)
T ss_dssp TTSSSCSCC-CCCCCCEECCCBTTEEEEECCCCC--CS-SCEEEEEEEEEBSSSCCEEEEEESC---TTCCEEEEESCCT
T ss_pred eeecCCCCC-CCCCceEEEeCCCCEEEEEeCCCC--CC-CCccEEEEEEEECCCCceEEEEcCC---CCcCEEEeCCCCC
Confidence 566766666 588899998889999999999842 32 6899999999998877776554432 2346788999999
Q ss_pred eeeEEEEEEEecCCCCCCCCc-eEEEee
Q psy14886 458 YTEYEVKVQAINDVGPGPESE-VVTIWH 484 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~-~~~~~t 484 (505)
++.|.|+|+|+|.+|.|++|+ .+...+
T Consensus 83 ~t~Y~~~V~A~n~~G~g~~S~~~~~~~t 110 (118)
T 2yrz_A 83 NHSYVFRVRAQSQEGWGREREGVITIES 110 (118)
T ss_dssp TCEEEEEEEEEESSCEEEEEEEEEECCC
T ss_pred CCEEEEEEEEEcCCcCCCCcCCceEeCC
Confidence 999999999999999999998 444444
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=126.56 Aligned_cols=167 Identities=17% Similarity=0.255 Sum_probs=109.7
Q ss_pred ceEEeeCCCeEEEEeecCCCC------CCeEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP------KPKFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDD 153 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p------~~~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d 153 (505)
..+.+.+|++++|.|.+.+.+ .+.+.|+++ +.. +. ...++..... .+|.|.+++.+|
T Consensus 13 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D 92 (264)
T 2gjj_A 13 SSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAED 92 (264)
T ss_dssp SEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHH
Confidence 456789999999999998887 579999984 321 10 1245544332 269999999999
Q ss_pred CEEEEEEEEcCCCce-eeeEEEEEEeCC------------------eeeeeCCCceEEEeeccEEEEEEeeecCCCCeEE
Q psy14886 154 SGIYSCTATNVHGMD-ESKGRLIVLHGP------------------SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~-~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~ 214 (505)
+|.|.|.+.+..+.. ...+.|.|..+| .+....+....+..|+.++|.|.+.+.+.....+
T Consensus 93 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 172 (264)
T 2gjj_A 93 LAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFI 172 (264)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred CEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEE
Confidence 999999999875432 233577776553 2222223345688999999999998876423467
Q ss_pred EEEeCC--EE---ec---CCCC------CcccCCeeee----cCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 215 IWTHNG--VR---IG---NMDL------NELETPNINI----DGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 215 ~w~~~~--~~---~~---~~~~------~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
.|+++. .. +. .... .......... ....|.|.++..+|+|.|.|.+.|.
T Consensus 173 ~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 173 NWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 898752 11 10 0000 0000011111 1347999999999999999999985
|
| >3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=121.79 Aligned_cols=183 Identities=15% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEee--eccccceeeeecCceeeEEee-eccCCceeE
Q psy14886 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS--EHVIGKEVDRYTGRKEASIEN-VLVPWSTYE 358 (505)
Q Consensus 282 p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~-~L~~~~~y~ 358 (505)
|.++.+.......+ |+|+++....+....|.|+|+..+...|.... ..++ ....-+.. .+.++..|.
T Consensus 11 P~nv~~~s~n~~~i-L~W~p~~~~~~~~~~Y~Vqy~~~~~~~W~~~~~C~~i~---------~~~Cdlt~~~~~~~~~Y~ 80 (211)
T 3g9v_A 11 PQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQ---------ELSCDLTSETSDIQEPYY 80 (211)
T ss_dssp CEEEEEEEETTEEE-EEEECCCC---CCCEEEEEEEETTCSSCEEEEEEEEEC---------CSEEECTGGGCSTTSCEE
T ss_pred CceeEEEEEcCceE-EEECCCCCCCCCCeEEEEEEEECCCCceEECccCCCCC---------CCEECCCCcccccCccEE
Confidence 78888877666665 99999876554467899999988778898642 1221 11222221 146788999
Q ss_pred EEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCcc--ccCCC--------CceEEEEEEE
Q psy14886 359 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE--KQNAP--------NIYYKIFWRK 428 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~--~~~~~--------i~~Y~v~~~~ 428 (505)
+||+|.+..|.+.++... .+.+......+||. +.+... .++|.|.|++|... +.+|. ...|+|.|.+
T Consensus 81 ~RV~A~~~~~~S~ws~~~-~f~~~~~t~i~PP~-v~v~~~-~~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~ 157 (211)
T 3g9v_A 81 GRVRAASAGSYSEWSMTP-RFTPWWETKIDPPV-MNITQV-NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIIN 157 (211)
T ss_dssp EEEEEEETTEECCCEECC-CBCHHHHCBCCCCE-EECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC-
T ss_pred EEEEEECCCCcCCCEecC-cccccccCccCCCE-EEEEEc-CCEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEE
Confidence 999999998888776443 44443344557785 777644 46999999995432 13443 4779999988
Q ss_pred cCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC--CCCCCCCceEEE
Q psy14886 429 KNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND--VGPGPESEVVTI 482 (505)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~--~G~g~~s~~~~~ 482 (505)
.+...-. ..... ....+.|.+|.|++.|.|+|+|+.. ...|++|++...
T Consensus 158 ~~~~~~~-~~~~~----~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~~~C~ 208 (211)
T 3g9v_A 158 NSLEKEQ-KVYEG----AHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCV 208 (211)
T ss_dssp -----CE-EEEEE----SSCCCC----------CEEEEEEETTTTEECCCCCC---
T ss_pred CCCccEE-EEEec----CCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCCCEeE
Confidence 7633311 11111 2356789999999999999999954 345788876543
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=120.78 Aligned_cols=167 Identities=14% Similarity=0.223 Sum_probs=107.5
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---e---c-------------CCCcEEEeeCC-----CEEEcCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I---G-------------SGGRRKIFENG-----NLLISPV 149 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~---~-------------~~~~~~~~~~~-----~l~i~~v 149 (505)
.+.+.+|++++|.|.+.+.+ ...+.|++. +.. + . ...++.+..+. +|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 88 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL 88 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence 35688999999999987643 569999973 211 1 0 12455544332 4999999
Q ss_pred CCCCCEEEEEEEEcCC--CceeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCC-CeEEEEEeCCEE
Q psy14886 150 SRDDSGIYSCTATNVH--GMDESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVR 222 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~--g~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~~ 222 (505)
+.+|+|.|.|.+.+.. ........|.|.. .|.+....+... ..|+.++|.|.+.+..+. .+.+.|.+++..
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~ 166 (221)
T 3m8o_H 89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQG 166 (221)
T ss_dssp CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence 9999999999999864 2223335676652 222221222222 678899999999984333 468889998765
Q ss_pred ecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 223 IGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 223 ~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
+....... .....+ ...+.|.|......|.|.|+|.|.|..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 167 VTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp CEEEECCCEECSSSSCE-EEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred CceEEcCceeeCCCCcE-EEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 52111000 001111 122368888888889999999999987653
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=142.32 Aligned_cols=168 Identities=18% Similarity=0.261 Sum_probs=118.3
Q ss_pred ceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEec------------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 97 SETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
....+.+|++++|.|.+ .+.|.+.+.|++++..+. -..+..+..+++|.|.+++.+|+|.|+|.+.+
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 45678999999999999 778888999999765221 02345566677899999999999999999999
Q ss_pred CCCce-eeeEEEEEEeCCeeeeeCCCceEEEeecc-EEEEEEeeec-CCCCeEEEEEeCCEEecCCCCCccc--------
Q psy14886 164 VHGMD-ESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELE-------- 232 (505)
Q Consensus 164 ~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~-------- 232 (505)
..+.. ...+.|.|..+|...........+..+.. +.|.|.+.+. |.+ .+.|+++|..+.........
T Consensus 454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~~ 531 (581)
T 3o3u_N 454 RNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAG--TLSWHLDGKPLVPNEKGVSVKEQTRRHP 531 (581)
T ss_dssp TTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCC--EEEEEETTEECCTTSTTEEEEEEEEECT
T ss_pred CCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCC--eEEEEECCEECCCCCCeEEEEeeeEEcC
Confidence 98887 66688888775543332233333555554 4669999885 654 67799999988653211100
Q ss_pred CCeeeecCCeEEEecCC-CCCCEEEEEEEEecCCc
Q psy14886 233 TPNINIDGGLLEITNAS-FADAGEYECVVKSTVGK 266 (505)
Q Consensus 233 ~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~ 266 (505)
........+.|.|..+. .++.+.|+|.|.|..+.
T Consensus 532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred CCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 01111123568888887 55688999999998654
|
| >1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=109.32 Aligned_cols=95 Identities=21% Similarity=0.152 Sum_probs=74.4
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCC-CCceEEEEEEEcCC-CCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNA-PNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~-~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
++.+|..+.+...+.++|.|.|++ +.+.++ +|++|.|+|+..+. ..|..... . ..+.+.+.+|.|++.|.|
T Consensus 7 ~P~~P~~p~~~~~~~~sv~l~W~~--p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~----~~~~~~v~~L~p~t~Y~f 79 (109)
T 1x5x_A 7 GPSMPASPVLTKAGITWLSLQWSK--PSGTPSDEGISYILEMEEETSGYGFKPKYD-G----EDLAYTVKNLRRSTKYKF 79 (109)
T ss_dssp CCCCCCCCEEEEECSSEEEEECCC--CSSCCSSSSCEEEEEECCSSSSCCCEEEEE-E----SCSEEEEESCCSSCEEEE
T ss_pred CCcCCCCCEEEEccCCEEEEEEcC--CCCCCCCcccEEEEEEecCCCCcceEEeEe-C----CccEEEECCCCCCCEEEE
Confidence 445566666777788999999998 344455 89999999998774 35553321 1 235788999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeecce
Q psy14886 464 KVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
||.|+|.+|.|++|+.+.+.|.+.
T Consensus 80 rV~A~n~~G~s~~S~~~~~~T~~~ 103 (109)
T 1x5x_A 80 KVIAYNSEGKSNPSEVVEFTTCPD 103 (109)
T ss_dssp EEEEECSSCEEEECCCEEEECCCC
T ss_pred EEEEEeCCCCcCCccCEEeEeCCC
Confidence 999999999999999999888653
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=105.75 Aligned_cols=79 Identities=22% Similarity=0.419 Sum_probs=67.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|++++|.|.+.|.|.+.++|+|||.+|... ...++.+. ..+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 17 v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~-----~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~ 90 (100)
T 3knb_A 17 IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQ-----EQGRFHIENTDDLTTLIIMDVQ-KQDGGLYTLSLGNEFGSDS 90 (100)
T ss_dssp EETTSEEEEEEEEEEESCCEEEEEETTEECCTT-----GGGTEEEEECSSEEEEEESSCC-GGGCEEEEEEEEETTEEEE
T ss_pred EeCCCeEEEEEEEEEecCCEEEEEECceEeeee-----ccceeeeecccceEEEEEcCCC-ccCCEEEEEEEEECCCEEE
Confidence 468999999999999999999999999998743 23455542 2479999999 9999999999999999988
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 91 ~~~~l~V~~ 99 (100)
T 3knb_A 91 ATVNIHIRS 99 (100)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEE
Confidence 888888864
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=124.03 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=109.4
Q ss_pred ceEEeeCCCeEEEEeecCCC--CCCeEEEEEC--CEE---e--------------cCCCcEEEeeCC-----CEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA--PKPKFVWKKD--GNI---I--------------GSGGRRKIFENG-----NLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~~--g~~---~--------------~~~~~~~~~~~~-----~l~i~~v~ 150 (505)
..+.+.+|++++|.|.+.+. +.+.+.|++. +.. + ....++.+..+. +|.|.+++
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 93 (256)
T 3juy_B 14 GAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR 93 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCC
Confidence 55779999999999998774 5679999973 211 1 012355554322 49999999
Q ss_pred CCCCEEEEEEEEcC------------CCceeeeEEEEEEeC--------------CeeeeeCCCceEEEeeccEEEEEEe
Q psy14886 151 RDDSGIYSCTATNV------------HGMDESKGRLIVLHG--------------PSYYEQLPPKITIAAHRNLQLRCSA 204 (505)
Q Consensus 151 ~~d~G~y~C~~~~~------------~g~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~~g~~~~l~C~~ 204 (505)
.+|+|.|.|.+.+. .+.......|.|... +..+...+....+..|+.++|.|.+
T Consensus 94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~ 173 (256)
T 3juy_B 94 SADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRS 173 (256)
T ss_dssp GGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEE
T ss_pred cccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEE
Confidence 99999999999986 223333466777653 2233444667788899999999999
Q ss_pred eecCCCCeEEEEEeC--CEEec---CCCCC----cccCCee--eecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 205 HTEELLDVAYIWTHN--GVRIG---NMDLN----ELETPNI--NIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 205 ~~~~~~~~~~~w~~~--~~~~~---~~~~~----~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
.+.+. ...+.|++. +.... ..... ....... ......|.|.++..+|+|.|.|.|.|..+
T Consensus 174 ~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 174 SHSIR-SRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SSCCT-TCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCCcC-CeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 88654 235668762 22111 00000 0000111 11223699999999999999999988544
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=105.19 Aligned_cols=89 Identities=27% Similarity=0.469 Sum_probs=74.0
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCC---CEEEcCCCCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG---NLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~---~l~i~~v~~~d~G~y~C~~ 161 (505)
||.|...+ .+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+.... ++.+...+ +|.|.++..+|+|.|+|.|
T Consensus 5 PP~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 5 PPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEECCCC--SEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCC--CcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 56665544 56789999999999999999999999999999986543 44444333 5999999999999999999
Q ss_pred EcCCCceeeeEEEEEE
Q psy14886 162 TNVHGMDESKGRLIVL 177 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~ 177 (505)
.|..|.....+.|.|.
T Consensus 83 ~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEEE
Confidence 9999998888888874
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.2e-14 Score=125.09 Aligned_cols=170 Identities=17% Similarity=0.195 Sum_probs=108.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EE---e-----------c---CCCcEEEeeC----CCEEEcCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NI---I-----------G---SGGRRKIFEN----GNLLISPVSRDD 153 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~---~-----------~---~~~~~~~~~~----~~l~i~~v~~~d 153 (505)
..+.+.+|++++|.|.+.+.+.+.+.|++++ .. + . ...++.+..+ .+|.|.+++.+|
T Consensus 32 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D 111 (279)
T 2wbj_D 32 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPED 111 (279)
T ss_dssp SEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGG
T ss_pred CeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccC
Confidence 4567899999999999988888899999853 11 1 0 1235554432 269999999999
Q ss_pred CEEEEEEEEcCCC----c--eeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCE
Q psy14886 154 SGIYSCTATNVHG----M--DESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221 (505)
Q Consensus 154 ~G~y~C~~~~~~g----~--~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 221 (505)
+|.|+|.+.+..+ . ....+.|.|.. +|.+....+....+..|+.+.|.|.+.+.+++.+.+.|++++.
T Consensus 112 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~ 191 (279)
T 2wbj_D 112 SSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK 191 (279)
T ss_dssp CEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTE
T ss_pred CEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCE
Confidence 9999999998432 1 12235677764 2222222222222336889999999998755457888999998
Q ss_pred EecCCCCCc--------ccCCeeeecCCeEEEecCCCC-CCEEEEEEEEecCCc
Q psy14886 222 RIGNMDLNE--------LETPNINIDGGLLEITNASFA-DAGEYECVVKSTVGK 266 (505)
Q Consensus 222 ~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~-~~g~y~C~~~n~~g~ 266 (505)
.+....... ..........+.|.|...... +.+.|+|.|.|....
T Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 192 EVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp ECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred ECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 875432100 000011111234666666554 478899999997654
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-15 Score=129.65 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=102.2
Q ss_pred eeCCCeEEEEeecCCC---CCC-eEEEEECCEEecCCCc--EEE------eeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 101 AGEGGNVTIFCNPEAA---PKP-KFVWKKDGNIIGSGGR--RKI------FENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~---p~~-~i~W~~~g~~~~~~~~--~~~------~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+.+|++++|.|.+.+. |.+ .|.|++++..+..... ... .....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 5689999999999876 665 9999998866542110 001 112358999999999999999999987754
Q ss_pred eeeEEE----EEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC---
Q psy14886 169 ESKGRL----IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG--- 241 (505)
Q Consensus 169 ~~~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--- 241 (505)
.....+ .+..+|.+....+... ...|+.+.|.|.+.+.+++.+.+.|+++|..+..... .......++
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~----~~~~~~~dgt~~ 183 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN----TPPTMDTDGSYF 183 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE----CCCEECTTSCEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee----cCceECCCCCEE
Confidence 222222 2223444333322221 1246789999999986655678899999988743210 000111222
Q ss_pred ---eEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 242 ---LLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 242 ---~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.|.+.....++.|.|+|.|.|....
T Consensus 184 ~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 184 LYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp EEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 2344443345689999999997654
|
| >1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=105.85 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCCCCCCCCCceeeeeccccccEEEEE--EeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccce
Q psy14886 381 TPADKPYQAPSRIGGGGGKIGDLSISW--EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY 458 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~~~~~~~v~l~W--~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 458 (505)
|....| .+|.++++...+.++|.|.| .+ +...+|. ++|.|+|+... ..+..... . . .+.|.+|.|+
T Consensus 5 T~~~~P-~~p~~l~~~~~~~~sv~l~W~~~~--P~~~ng~-~~Y~v~y~~~~-~~~~~~~~---~--~--~~~i~~L~p~ 72 (107)
T 1x5a_A 5 SSGAES-LSGLSLKLVKKEPRQLELTWAGSR--PRNPGGN-LSYELHVLNQD-EEWHQMVL---E--P--RVLLTKLQPD 72 (107)
T ss_dssp TTTCCC-CCSCCCCEEEEETTEEEEECCCCC--SSCCSSC-CEEEEEEECSS-CEEEEEES---S--S--EEEEESCCSS
T ss_pred CCCCCC-CCCCceEEEecCCCEEEEEECCCC--CCCCCCc-eEEEEEEEeCC-CCceEEEe---c--c--eEEECCCCCC
Confidence 444444 56779999889999999999 65 5677888 99999998862 22211111 1 1 1899999999
Q ss_pred eeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 459 TEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.|.|+|+|.|.+|.|++|+.+.+.|.+
T Consensus 73 t~Y~f~V~A~~~~G~g~~S~~~~~~T~~ 100 (107)
T 1x5a_A 73 TTYIVRVRTLTPLGPGPFSPDHEFRTSP 100 (107)
T ss_dssp CEEEEEEEEECSSSCCCCCCCEEEECCC
T ss_pred CEEEEEEEEECCCccCCCCCCEEEEECC
Confidence 9999999999999999999999998864
|
| >2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=106.84 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=74.2
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
...+.+..+|.+|.++++...+ ++|.|.|++ +.+.+|.|++|+|+|+.... .+...... ...+.+.|.+|.|
T Consensus 9 ~~~t~e~~~P~~P~~l~~~~~~-~sv~l~W~~--P~~~ng~i~gY~i~y~~~~~-~~~~~~~~----~~~~~~~l~~L~p 80 (116)
T 2edb_A 9 ENDLDESQVPDQPSSLHVRPQT-NCIIMSWTP--PLNPNIVVRGYIIGYGVGSP-YAETVRVD----SKQRYYSIERLES 80 (116)
T ss_dssp SSSCBCSSCCCCCSCEEEEECS-SCEEEEECC--CSCTTBCCCEEEEEEEESST-TSEEEEEE----TTCCEEEECSCCS
T ss_pred cccCCCCCCCCCCCCeEEEECC-CEEEEEEcC--CCCCCCceeEEEEEEEeCCC-CeEEEEeC----CCeeEEEeCCCCC
Confidence 4445553455699999998887 999999998 45568999999999997442 22222222 1346789999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
++.|.|+|+|+|.+|.|+++.. .+.|.
T Consensus 81 ~t~Y~~~V~A~n~~G~g~~~~~-~~~T~ 107 (116)
T 2edb_A 81 SSHYVISLKAFNNAGEGVPLYE-SATTR 107 (116)
T ss_dssp SSBEEEEEEEEETTEECSCEEE-CCBCC
T ss_pred CCEEEEEEEEEeCCccCCCCcc-eeecc
Confidence 9999999999999999997753 34443
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-14 Score=122.56 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=105.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEE---e-c--C---------CC-cEEEeeCCC--EEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I-G--S---------GG-RRKIFENGN--LLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~---~-~--~---------~~-~~~~~~~~~--l~i~~v~~~d~G~ 156 (505)
..+.+.+|++++|.|.+.+.+.+.+.|++. +.. + . . .. ++....+.. |.|.+++.+|+|.
T Consensus 9 ~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG~ 88 (253)
T 3to4_D 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRT 88 (253)
T ss_dssp SEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCEE
T ss_pred CeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCeE
Confidence 456789999999999988888889999982 211 1 0 0 11 444433332 9999999999999
Q ss_pred EEEEEEcCCC------ceeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEec
Q psy14886 157 YSCTATNVHG------MDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224 (505)
Q Consensus 157 y~C~~~~~~g------~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~ 224 (505)
|.|.+.+..+ .......|.|.. +|.+....+....+..|..++|.|.+.+..++.+.+.|.++|..+.
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~ 168 (253)
T 3to4_D 89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH 168 (253)
T ss_dssp EEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred EEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECC
Confidence 9999987643 112224666653 2222222122222224678999999999655557889999999886
Q ss_pred CCCCCcc---------cCCeeeecCCeEEEecCCCCC-CEEEEEEEEecC
Q psy14886 225 NMDLNEL---------ETPNINIDGGLLEITNASFAD-AGEYECVVKSTV 264 (505)
Q Consensus 225 ~~~~~~~---------~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~ 264 (505)
....... ....+ ...+.|.+.....++ .+.|+|.|.|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~g~~-~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 169 SGVSTDPQPLKEQPALNDSRY-ALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp TTEEECSSCEESSTTCTTCCE-EEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred CceecccccccccccCCCCCE-EEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 5321100 01111 112356666665555 789999998864
|
| >1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-14 Score=109.83 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC--CCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN--DTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
...+|.+|.++.+...+.+++.|.|++ +.+.+++|++|.|+|+..+ ...|....... .+.. . .+.+|.|++.
T Consensus 13 v~~~P~~P~~~~~~~~~~~sv~l~W~p--~~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~-~~~~--~-~i~~L~p~t~ 86 (127)
T 1uey_A 13 VYDVPNPPFDLELTDQLDKSVQLSWTP--GDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS-GTQT--T-AQLNLSPYVN 86 (127)
T ss_dssp CCCSCCCCEEEEEECCSSSCEEEEEEC--CCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEE-SSCC--E-EEECCCTTCE
T ss_pred eecCCcCCCCcEEEEccCCEEEEEEEC--CCCCCCCceEEEEEEEECCCCCCccEEEeeeC-CCce--E-EEecCCCCCE
Confidence 345667999999998899999999997 5778899999999999865 46687544332 2222 2 3569999999
Q ss_pred EEEEEEEecCCCCCCCCceE-EEeec
Q psy14886 461 YEVKVQAINDVGPGPESEVV-TIWHD 485 (505)
Q Consensus 461 Y~~~v~a~n~~G~g~~s~~~-~~~t~ 485 (505)
|.|||+|+|.+|.|++|+.. .+.|.
T Consensus 87 Y~frV~A~n~~G~s~~S~~~~~~~T~ 112 (127)
T 1uey_A 87 YSFRVMAVNSIGKSLPSEASEQYLTK 112 (127)
T ss_dssp ECCEEEEEESSCBCCCCSCCCCEECC
T ss_pred EEEEEEEEeCCccCCccccccceEcC
Confidence 99999999999999999985 56664
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-15 Score=130.89 Aligned_cols=198 Identities=16% Similarity=0.187 Sum_probs=100.1
Q ss_pred eEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC----CCeEEEEECCEEecCCCc--
Q psy14886 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP----KPKFVWKKDGNIIGSGGR-- 135 (505)
Q Consensus 62 G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~g~~~~~~~~-- 135 (505)
|.|.|.+.+..+. .... .+.. +|.+.+.+......+..|+.++|.|.+.|.. ...|+|+++|..+.....
T Consensus 1 ~~~~~~~~~~~~~--c~~~-~~~~-~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~ 76 (240)
T 4acp_A 1 GTKSCDKTHTCPP--CPAP-ELLG-GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP 76 (240)
T ss_dssp --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred CceeeeeeecCCC--CCcc-ccCC-CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence 6799988876553 1111 1111 2322222211111144699999999998864 348999999998743211
Q ss_pred EEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE----EEeCCeeeeeCCCceEEEeeccEEEEEEee
Q psy14886 136 RKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI----VLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205 (505)
Q Consensus 136 ~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 205 (505)
.....+ ..|.|.....+|.|.|+|.|.+..+.......+. +..+|.+....+.... ..|..+.|.|.+.
T Consensus 77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~-~~g~~~~L~C~~~ 155 (240)
T 4acp_A 77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVK 155 (240)
T ss_dssp CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEE
T ss_pred ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHH-hcCCceEEEEEEe
Confidence 011112 2466766666789999999999876432222221 2234444433322221 2378899999999
Q ss_pred ecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 206 TEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 206 ~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
+..++.+.+.|.++|..+....... ..... ....+.|.+......+.+.|+|.|.+..-
T Consensus 156 gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt-~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 156 GFYPSDIAVEWESNGQPENNYKATPPVLDSDGS-FFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp EEBSSCCEEEEEETTEECSSEEECCCEECTTSC-EEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred EEeCCCcEEEEEECCEECCCcCccCceECCCCC-EEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 9655567899999998864311000 00011 11123455554444568999999998654
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-15 Score=129.16 Aligned_cols=164 Identities=10% Similarity=0.088 Sum_probs=105.5
Q ss_pred EeeCCCeEEEEeecCCC-CC-C-eEEEEECCEEe-cCCCcEE-EeeCC------CEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 100 YAGEGGNVTIFCNPEAA-PK-P-KFVWKKDGNII-GSGGRRK-IFENG------NLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p~-~-~i~W~~~g~~~-~~~~~~~-~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
.+.+|+.++|.|.+.+. |. + .+.|+++|..+ ....... ...++ .|.|.++..+|+|.|+|.+.+..+..
T Consensus 24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 103 (231)
T 2w59_A 24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL 103 (231)
T ss_dssp HHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC
Confidence 36789999999999884 63 4 99999998876 3222111 11222 48899999999999999999877543
Q ss_pred eeeEEEEEE------eCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc---c-------
Q psy14886 169 ESKGRLIVL------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---E------- 232 (505)
Q Consensus 169 ~~~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~------- 232 (505)
...+.|. .+|.+....+.... ..+..+.|.|.+.+.+++.+.+.|+++|..+........ .
T Consensus 104 --~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~ 180 (231)
T 2w59_A 104 --PLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANG 180 (231)
T ss_dssp --CEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC
T ss_pred --ceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccc
Confidence 2333332 23333222222221 124469999999997655678899999998865321100 0
Q ss_pred --CC-eeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 233 --TP-NINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 233 --~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
.. ......+.|.|.....++.|.|+|.|.|....
T Consensus 181 ~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 181 AGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp ---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred cCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 00 01111235667766677899999999997654
|
| >3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=117.86 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=128.4
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE--EE
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK--TT 272 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~--~~ 272 (505)
...+.|.|.........+.+.|...+.... ...........+.+.++.....+.|++.|.|..|....+ +.
T Consensus 19 ~~si~l~W~~p~g~i~~Y~v~~~~~~~~~~-------~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~ 91 (234)
T 3f7q_A 19 SRKIHFNWLPPSGKPMGYRVKYWIQGDSES-------EAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVS 91 (234)
T ss_dssp SSCEEEEEECCSSCCCEEEEEEEETTSCGG-------GCEEEEESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEE
T ss_pred CCEEEEEEECCCCccceEEEEEEECCCCcc-------ceEEEcCCccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEE
Confidence 346777777653333345555654432111 112233456678899999888888999999987764332 22
Q ss_pred EEE-cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC-----eEEeeeccccceeeeecCceeeE
Q psy14886 273 VIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST-----WFNVSEHVIGKEVDRYTGRKEAS 346 (505)
Q Consensus 273 l~v-~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~-----w~~~~~~~~~~~~~~~~~~~~~~ 346 (505)
+.. ...|.+|.++.+.....+++.|+|.+|...++.+.+|.|+|+...... |....... .....+.
T Consensus 92 ~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (234)
T 3f7q_A 92 CRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN--------PKNRMLL 163 (234)
T ss_dssp EECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBSSCCEECCCSC--------TTCCEEE
T ss_pred EEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCCccCcceEEEecC--------CcceEEE
Confidence 222 345777888999989999999999998877789999999998765432 22221110 0123445
Q ss_pred EeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEE
Q psy14886 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 426 (505)
Q Consensus 347 ~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~ 426 (505)
+.+ |.+++.|.|+|+|.|..|.|++|.....+.|.+..|+.+|....+.. + ....+..+.+|.+++
T Consensus 164 i~~-L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P~~~P~~~~~~i-------~------~~~~g~~~~~~~~~~ 229 (234)
T 3f7q_A 164 IEN-LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPI-------V------DAQSGEDYDSFLMYS 229 (234)
T ss_dssp EEC-CCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCCCCCCCCTTCCE-------E------ETTC-----------
T ss_pred eCC-CCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCCCCCccccceee-------E------EcccCcchheeeeeh
Confidence 555 99999999999999999999988754478888888888876544421 1 124455677888877
Q ss_pred EE
Q psy14886 427 RK 428 (505)
Q Consensus 427 ~~ 428 (505)
+.
T Consensus 230 ~~ 231 (234)
T 3f7q_A 230 DD 231 (234)
T ss_dssp --
T ss_pred hh
Confidence 64
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=126.94 Aligned_cols=183 Identities=15% Similarity=0.233 Sum_probs=110.1
Q ss_pred ceEEeeCCCeEEEEeecCCC--CCCeEEEEECC--EEec-----------------CCCcEEEeeCC-----CEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA--PKPKFVWKKDG--NIIG-----------------SGGRRKIFENG-----NLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~~~~-----------------~~~~~~~~~~~-----~l~i~~v~ 150 (505)
..+.+.+|++++|.|.+.+. +.+.+.|++.. .... ...++.+..+. +|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (280)
T 3fku_X 8 GAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLR 87 (280)
T ss_dssp CCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCC
T ss_pred CCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence 44668899999999998775 45799998732 1110 01344444222 59999999
Q ss_pred CCCCEEEEEEEEcC---------CCceeeeEEEEEEe--------------CCeeeeeCCCceEEEeeccEEEEEEeeec
Q psy14886 151 RDDSGIYSCTATNV---------HGMDESKGRLIVLH--------------GPSYYEQLPPKITIAAHRNLQLRCSAHTE 207 (505)
Q Consensus 151 ~~d~G~y~C~~~~~---------~g~~~~~~~l~v~~--------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~ 207 (505)
.+|+|.|.|.+.+. .........|.|.. .+..+...+. ..+..|+.++|.|.+.+.
T Consensus 88 ~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~ 166 (280)
T 3fku_X 88 SEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSN 166 (280)
T ss_dssp STTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCCC
T ss_pred hhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCC
Confidence 99999999999886 11122335677655 1222333333 778899999999999884
Q ss_pred CCCCeEEEEEeC--CEEec---CCC--CC--cccCCeeee--cCCeEEEecCCCCCCEEEEEEEEecCCc---EEEEEEE
Q psy14886 208 ELLDVAYIWTHN--GVRIG---NMD--LN--ELETPNINI--DGGLLEITNASFADAGEYECVVKSTVGK---ISTKTTV 273 (505)
Q Consensus 208 ~~~~~~~~w~~~--~~~~~---~~~--~~--~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~n~~g~---~~~~~~l 273 (505)
..+...+.|++. +..+. ... .. ......... ....|.|.+++.+|+|.|.|.+.+..+. ......|
T Consensus 167 ~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l 246 (280)
T 3fku_X 167 NVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKL 246 (280)
T ss_dssp CCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCEE
T ss_pred CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEEE
Confidence 322235568762 22111 000 00 000011111 1235999999999999999999987632 2233466
Q ss_pred EEcCCCC
Q psy14886 274 IVEGPPG 280 (505)
Q Consensus 274 ~v~~~p~ 280 (505)
.|...|.
T Consensus 247 ~V~~~~~ 253 (280)
T 3fku_X 247 TVLGQPK 253 (280)
T ss_dssp EEC----
T ss_pred EECCCCC
Confidence 6655443
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.9e-14 Score=122.68 Aligned_cols=165 Identities=15% Similarity=0.244 Sum_probs=101.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEE---ecC-C-------------CcEEEe-----eCCCEEEcCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---IGS-G-------------GRRKIF-----ENGNLLISPVSRD 152 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~---~~~-~-------------~~~~~~-----~~~~l~i~~v~~~ 152 (505)
..+.+.+|++++|.|.+.+.+.+.+.|++. +.. +.. . .+.... ...+|.|.+++.+
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 89 (259)
T 3omz_A 10 KSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEN 89 (259)
T ss_dssp -CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGG
T ss_pred ceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcc
Confidence 457799999999999999988889999982 211 100 0 011111 1235999999999
Q ss_pred CCEEEEEEEEcCCC---ceeeeEEEEEEeC----------------CeeeeeCCCceEEEeeccEEEEEEeeecCCCCeE
Q psy14886 153 DSGIYSCTATNVHG---MDESKGRLIVLHG----------------PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213 (505)
Q Consensus 153 d~G~y~C~~~~~~g---~~~~~~~l~v~~~----------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~ 213 (505)
|+|.|.|.+.+..+ .......|.|... +..+...+....+..|+.++|.|.+.+.. +...
T Consensus 90 DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~-~~~~ 168 (259)
T 3omz_A 90 DSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSW-WSYY 168 (259)
T ss_dssp GCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCC-SSCE
T ss_pred cCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCcc-CCce
Confidence 99999999998765 2333466777653 12333445567889999999999887642 2456
Q ss_pred EEEEeCC--EEecC-----CCCCcccCCeee------ecCCeEEEecCCCCCCEEEEEEEEe
Q psy14886 214 YIWTHNG--VRIGN-----MDLNELETPNIN------IDGGLLEITNASFADAGEYECVVKS 262 (505)
Q Consensus 214 ~~w~~~~--~~~~~-----~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~C~~~n 262 (505)
+.|+++. ..+.. .........++. .....|.|.++..+|+|.|.|.+.+
T Consensus 169 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp EEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred EEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 7798732 11100 000000001111 1235699999999999999999975
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=120.40 Aligned_cols=167 Identities=14% Similarity=0.225 Sum_probs=102.6
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEEe----c------------CCCcEEEeeC-----CCEEEcCCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNII----G------------SGGRRKIFEN-----GNLLISPVSRDD 153 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~~----~------------~~~~~~~~~~-----~~l~i~~v~~~d 153 (505)
+.+.+|++++|.|.+.+.+ .+.+.|+++ +... . ...++.+..+ .+|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (215)
T 1c5d_H 10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED 89 (215)
T ss_dssp CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence 4688999999999998764 468999984 2211 0 1235544421 269999999999
Q ss_pred CEEEEEEEEcCCCc---eeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 154 SGIYSCTATNVHGM---DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 154 ~G~y~C~~~~~~g~---~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
+|.|.|.+.+..+. ....+.|.|.. +|.+....+ ...+..|+.+.|.|.+.+..+..+.+.|.+++..+...
T Consensus 90 ~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~ 168 (215)
T 1c5d_H 90 TAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAP-GCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH 168 (215)
T ss_dssp CEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECC-CSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred CEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccC-ChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence 99999999886422 12336777763 233332222 22346789999999999873223578899987543211
Q ss_pred CCCc-ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEE
Q psy14886 227 DLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270 (505)
Q Consensus 227 ~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~ 270 (505)
.... .....+. ..+.|. ....++ |.|+|.|.|..|.....
T Consensus 169 ~~~~~~~~g~~~-~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~ 209 (215)
T 1c5d_H 169 TFPAVLQSGLYT-LTSSVT--SSTWPS-QTVTCNVAHPASSTKVD 209 (215)
T ss_dssp BCCCEEETTEEE-EEEEEE--ESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred ecCcccCCCCEE-EEEEEe--cccCCC-CeEEEEEEeCCCCccEE
Confidence 1000 0000110 111232 333355 99999999998875443
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=124.94 Aligned_cols=164 Identities=21% Similarity=0.243 Sum_probs=103.0
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EE---Cc-C--CCCC---CCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--EL---LN-S--ETLP---LEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~---l~-~--~~~~---~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|.+.+. +...+.|+|.. .. +. . .... ....+|+.+.. .+|.|.+++ .+|+
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~-~~D~ 91 (230)
T 1ypz_F 13 RPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE-EEDE 91 (230)
T ss_dssp EETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC-GGGC
T ss_pred EeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC-hhhC
Confidence 3589999999999764 56789999942 21 10 0 0000 00346776642 279999999 9999
Q ss_pred eEEEEEEEcc--cCc-e-EeeEEEEEEec--------CCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEE-C
Q psy14886 62 AMYQCRAKNQ--LKT-R-YSSAQLRVLTL--------KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKK-D 126 (505)
Q Consensus 62 G~Y~C~~~~~--~~~-~-~~~~~l~v~~~--------~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~-~ 126 (505)
|.|.|.+.+. ... . ...+.|.|... +|...+.. +....+.+|+.++|.|.+.+. |. +.|.|++ +
T Consensus 92 G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~-p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~ 170 (230)
T 1ypz_F 92 AIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFL-PSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKD 170 (230)
T ss_dssp SEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEEC-CCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTT
T ss_pred EEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEEC-CCchhhccCCcceEEEEEeeecCCCeEEEEEccC
Confidence 9999999874 111 1 12456777621 22222211 111224568899999999876 65 5999999 8
Q ss_pred CEEecCCCc-EEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 127 GNIIGSGGR-RKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 127 g~~~~~~~~-~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
|..+..... .....+ ..|.|.++.. + |.|+|.|.+.....
T Consensus 171 g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 171 GNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp SSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred CeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 776642210 001112 2478877765 4 89999999876643
|
| >2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-14 Score=104.54 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=74.0
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
..|..+|.++.+...+.+++.|+|+++ .+.+.+|+|+|+..++..+....+.. ..+.+.|.+|.|++.|.|
T Consensus 5 t~p~~pP~~l~~~~vt~tsi~vsW~pp-----~~~i~~Y~I~y~~~~~~~~~~~~v~~----~~t~~~l~~L~p~T~Y~v 75 (108)
T 2ee3_A 5 SSGLAPPRHLGFSDVSHDAARVFWEGA-----PRPVRLVRVTYVSSEGGHSGQTEAPG----NATSAMLGPLSSSTTYTV 75 (108)
T ss_dssp CCCCCCSSCEEEESCCSSCEEEEESCC-----SSCCSEEEEEEEETTTCCBCCEEEET----TCCEEEECSCCSSCEEEE
T ss_pred ccCCCCCceEEEEEccCCeEEEEeeCC-----CCCccEEEEEEEeCCCCceeEEEcCC----CcCEEEcCCCCCCCEEEE
Confidence 346678999999999999999999983 26799999999988755544334332 336789999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeec
Q psy14886 464 KVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
+|.|+|..|.|+++.. .+.|.
T Consensus 76 ~V~A~~~~g~s~p~~~-~~~T~ 96 (108)
T 2ee3_A 76 RVTCLYPGGGSSTLTG-RVTTK 96 (108)
T ss_dssp EEEEECTTSCEEEEEE-EEECC
T ss_pred EEEEEeCCCcCCCccC-EEEeC
Confidence 9999999999998865 45553
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-15 Score=130.43 Aligned_cols=170 Identities=15% Similarity=0.244 Sum_probs=103.3
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEECC--EE---C---c------CC---CCCCCCCCcEEEEC------CeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRNG--EL---L---N------SE---TLPLEDQDRYFIQD------NVLTIR 53 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~~--~~---l---~------~~---~~~~~~~~~~~~~~------~~L~i~ 53 (505)
+.+|++++|.|.+.+.+ ...+.|+|.. .. + . .. .......+|+.+.. .+|.|.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 91 (239)
T 3tv3_H 12 VEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLN 91 (239)
T ss_dssp ECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEEC
T ss_pred EcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEEC
Confidence 46899999999998754 4589999942 11 1 0 00 00001246776532 359999
Q ss_pred cCCCCCCCeEEEEEEEcccC-----------c--eEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-
Q psy14886 54 YLNPERDPAMYQCRAKNQLK-----------T--RYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA- 116 (505)
Q Consensus 54 ~~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~- 116 (505)
+++ .+|+|.|.|.+.+..+ . ......|.|.. .+|.+...+ +...+..|+.++|.|.+.+.
T Consensus 92 ~v~-~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~l~C~~~~~~ 168 (239)
T 3tv3_H 92 SVT-AADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYF 168 (239)
T ss_dssp SCC-GGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEEC--CCCCC--TTEEEEEEEEEEEB
T ss_pred CCC-hhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEEC--CChhhccCCcEEEEEEEeeEe
Confidence 999 9999999999986531 1 11234566652 123222111 11224579999999999874
Q ss_pred CCC-eEEEEECCEEecCCC-cEEEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 117 PKP-KFVWKKDGNIIGSGG-RRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 117 p~~-~i~W~~~g~~~~~~~-~~~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
|.+ .+.|+++|..+.... ......+ ..|.|......| |.|+|.|.+..+.......|
T Consensus 169 p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l 233 (239)
T 3tv3_H 169 PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV 233 (239)
T ss_dssp SSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred CCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEe
Confidence 534 689999886432100 0011112 247788888888 99999999987655444443
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=123.69 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=105.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC-----CCeEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-----KPKFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-----~~~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|.+.+.+ .+.+.|+++ +.. +. ...++..... .+|.|.+++.+|+
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 102 (268)
T 1x9q_A 23 LSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDL 102 (268)
T ss_dssp SEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHC
Confidence 445688999999999998876 479999984 221 11 1245544332 2699999999999
Q ss_pred EEEEEEEEcCCCcee-eeEEEEEEeCCe----------------------eeeeCCCceEEEeeccEEEEEEeeecCCCC
Q psy14886 155 GIYSCTATNVHGMDE-SKGRLIVLHGPS----------------------YYEQLPPKITIAAHRNLQLRCSAHTEELLD 211 (505)
Q Consensus 155 G~y~C~~~~~~g~~~-~~~~l~v~~~p~----------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~ 211 (505)
|.|.|.+.+..+... ....|.|...+. .....+....+..|+.++|.|.+.+.+...
T Consensus 103 G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~ 182 (268)
T 1x9q_A 103 GVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGH 182 (268)
T ss_dssp EEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGG
T ss_pred EEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccc
Confidence 999999998754322 235666654321 011123355778899999999998775434
Q ss_pred eEEEEEeC--CEEecC---CC-----------CCcccCCeeee----cCCeEEEecCCCCCCEEEEEEEEec
Q psy14886 212 VAYIWTHN--GVRIGN---MD-----------LNELETPNINI----DGGLLEITNASFADAGEYECVVKST 263 (505)
Q Consensus 212 ~~~~w~~~--~~~~~~---~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~n~ 263 (505)
..+.|+++ +..+.. .. ........... ....|.|.++..+|+|.|.|.+.+.
T Consensus 183 ~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 183 YWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp CEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred cEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 56789874 222100 00 00000111111 1247999999999999999999874
|
| >1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=109.53 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=79.5
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
...++.+|.++.+.....++|.|.|++ +.+.++++++|.|+|+..+ ...|....... ..+.+.+.+|.|++.|
T Consensus 12 ~~~~P~~P~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y 85 (117)
T 1uem_A 12 LSDLPGPPSKPQVTDVTKNSVTLSWQP--GTPGTLPASAYIIEAFSQSVSNSWQTVANHV----KTTLYTVRGLRPNTIY 85 (117)
T ss_dssp SCCSCBCCCCCEEEEECSSCEEEECCC--CBCSSSCCCEEEEEEEETTTEEEEEEEEEEE----CSSEEEECSCCTTCEE
T ss_pred CCCCccCCCCCEEEEecCCEEEEEEeC--CCCCCcCceEEEEEEEECCCCCceeEccccc----CcCEEEECCCCCCCEE
Confidence 455667899999988889999999998 4478889999999999875 56676544322 3457899999999999
Q ss_pred EEEEEEecCCCCCCCCceEE-Eeec
Q psy14886 462 EVKVQAINDVGPGPESEVVT-IWHD 485 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~~~-~~t~ 485 (505)
.|+|+|+|..|.|++|+.+. +.|.
T Consensus 86 ~frV~A~n~~G~s~~S~~~~~v~t~ 110 (117)
T 1uem_A 86 LFMVRAINPQGLSDPSPMSDPVRTQ 110 (117)
T ss_dssp EEEEEEEETTEEEEECCCCCCEECC
T ss_pred EEEEEEECCCccCCCcCCCccEEcc
Confidence 99999999999999998877 5554
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-12 Score=105.03 Aligned_cols=243 Identities=13% Similarity=0.161 Sum_probs=145.1
Q ss_pred EeeCCCeEEEEeecCCC-C---CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAA-P---KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p---~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.+..|+.++|.|.+.+. | ...+.|+|+|..+... .+.|.+..+...|+|.|+|.+.+..|.......+.
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~Vt 85 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSENAGSYKVTVQDTDTMTSVESEVF 85 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCE
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-------cceEEeeeccccCCeEEEEEEEECCCCeeeeeeEE
Confidence 36789999999997544 5 3489999999886532 34688999999999999999999888765544344
Q ss_pred EEeCCe--eeeeCCCceEEEeeccEEEEEEe--eecCCC----CeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEec
Q psy14886 176 VLHGPS--YYEQLPPKITIAAHRNLQLRCSA--HTEELL----DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247 (505)
Q Consensus 176 v~~~p~--~~~~~~~~~~~~~g~~~~l~C~~--~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 247 (505)
|...+. .....+....+..+..+.|.+.+ .++.+| .+++.|++++..+.. ...+.+..
T Consensus 86 VT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg--------------Aq~lT~sS 151 (304)
T 3shs_A 86 LMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------------TQDITIQE 151 (304)
T ss_dssp EECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES--------------SSEEEECS
T ss_pred EeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC--------------ccccceee
Confidence 433222 22222344455567788898887 443333 579999999987743 23567777
Q ss_pred CCCCCCEEEEEEEEecCCc--EEEEEEEEEcCCCCCC-CceEEEEEeCCeEEEEeecCC-----CCCCCC--ceEEEEEE
Q psy14886 248 ASFADAGEYECVVKSTVGK--ISTKTTVIVEGPPGLP-GGVQVVEVHKTSATIQWTDGA-----TNGRPI--THYKIIAR 317 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g~--~~~~~~l~v~~~p~~p-~~~~~~~~~~~~v~l~w~~~~-----~~~~~i--~~y~v~~~ 317 (505)
....+.|.|+|.+.|..+. .+.++.+.+...+.+. .-..-....+..+.|..-... ..+.|- +.|.++..
T Consensus 152 ~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (304)
T 3shs_A 152 FTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQ 231 (304)
T ss_dssp CCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEE
T ss_pred EEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEe
Confidence 7888999999999998774 3444444443222111 112334445666666554211 122332 34666666
Q ss_pred eCCCCCeEEeeeccc-cceeeeecCceeeEEeeeccCCceeEEEEEEE
Q psy14886 318 TNWNSTWFNVSEHVI-GKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 364 (505)
Q Consensus 318 ~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~ 364 (505)
..++..-.....++. ..+--....+.+.+... ..-++.-.|.|.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 278 (304)
T 3shs_A 232 REGQLSPTLIGSEVGEALEGFSITPDGHLFKES-ATYDDTAKFWCVAK 278 (304)
T ss_dssp CTTCCSCEEEESSSEECGGGEEECTTSCEEESS-CCGGGCEEEEEEEE
T ss_pred ecCccCchhhhhhhhhhhccceeCCCcceeecc-cccccchheeeHHH
Confidence 555443333322221 00001111223333333 44455667777764
|
| >3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-14 Score=102.84 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC-CCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
..+.+|.++.+...+.+++.|+|++ +.+.++.+.+|.|+|+..+. ..+....+.. ..+.+.|.+|.|++.|.|
T Consensus 6 t~~~~P~~l~v~~~t~~Sv~lsW~~--p~~~~g~i~~Y~v~y~~~~~~~~~~~~~v~~----~~ts~~l~~L~p~t~Y~~ 79 (103)
T 3t04_D 6 SVSSVPTKLEVVDATPTSLKISWDA--YYSSWQNVKYYRITYGETGGDSPVQEFTVPG----YYSTATISGLKPGVDYTI 79 (103)
T ss_dssp CCCCCCCSCEEEEEETTEEEEECTT--TTTTSCCCCEEEEEEEETTCSSCCEEEEEET----TCCEEEECSCCTTCCEEE
T ss_pred ccCCCCceeEEEecCCCEEEEEccC--CCCCCCccceEEEEEEECCCCCccEEEEcCC----CcCEEEeCCCCCCCEEEE
Confidence 3456899999999999999999998 44568999999999999763 3333333322 346889999999999999
Q ss_pred EEEEecC--CCCCCCCceEE
Q psy14886 464 KVQAIND--VGPGPESEVVT 481 (505)
Q Consensus 464 ~v~a~n~--~G~g~~s~~~~ 481 (505)
+|.|+|. +|.|+ |+++.
T Consensus 80 ~V~A~~~~~~G~~~-S~p~~ 98 (103)
T 3t04_D 80 TVYAYDTFFPGYEP-NSPIS 98 (103)
T ss_dssp EEEEESCCCTTCCC-SCCEE
T ss_pred EEEEEeCCCCCCCC-CCCEE
Confidence 9999999 99999 65544
|
| >3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-13 Score=121.89 Aligned_cols=180 Identities=10% Similarity=0.044 Sum_probs=110.7
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCC-CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~-~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
..||.++++......++.|+|++|... ++.+..|++.+.. .|.... . ........ +.++..|
T Consensus 4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~----~~~~~~---~---------~~~~~~~~-~~~~~~y 66 (314)
T 3bpo_C 4 QPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD----KQDKKI---A---------PETRRSIE-VPLNERI 66 (314)
T ss_dssp CCCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC------CCCEE---E---------SSSEEEEE-CCCSSCE
T ss_pred CCCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecc----cCceEe---c---------cccEEEEE-EcCCCcE
Confidence 367888999888889999999998744 4667788887643 221110 0 11223344 8999999
Q ss_pred EEEEEEEc-CCCcCCCCCCCC-CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcE
Q psy14886 358 EFKVIAGN-ELGYGEPSSPSP-QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ 435 (505)
Q Consensus 358 ~~~v~a~n-~~G~~~~s~~~~-~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~ 435 (505)
.|+|+|.+ ..|.|.++.+.. .+.+.++.|+.+|.++.....+.+.++++|+++ .+. +.+++|.|.|+..+...+.
T Consensus 67 ~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~--~~~-~~~~~Y~l~y~~~~~~~~~ 143 (314)
T 3bpo_C 67 CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG--RNT-SPDTNYTLYYWHRSLEKIH 143 (314)
T ss_dssp EEEEEECC---------CCEEEEECCCCC-CCSSCEEEEEEEETTTEEEEEEECC--C----CCCCEEEEEEESSCSSCE
T ss_pred EEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEeceEEECCCCeEEEEECCC--CCC-CCCccEEEEEEeCCCCccc
Confidence 99999964 566666555532 123567788889999998877788999999983 333 4589999999887644444
Q ss_pred EEEe-eecCceeeEEEEcCC--ccceeeEEEEEEEecCCCCCCCCc
Q psy14886 436 SETL-KEYGNVGIAVVRIPS--EFYYTEYEVKVQAINDVGPGPESE 478 (505)
Q Consensus 436 ~~~~-~~~~~~~~~~~~l~~--L~p~~~Y~~~v~a~n~~G~g~~s~ 478 (505)
.... ........+.+.... +.+.+.|.|+|.|.|..|.+..+.
T Consensus 144 ~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~ 189 (314)
T 3bpo_C 144 QCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSF 189 (314)
T ss_dssp ECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCEE
T ss_pred cCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceeccc
Confidence 3211 111222233333332 124789999999999999998764
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-14 Score=123.10 Aligned_cols=167 Identities=17% Similarity=0.279 Sum_probs=92.7
Q ss_pred EEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---e---c-----------CCCcEEEeeC-----CCEEEcCCCCC
Q psy14886 99 TYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I---G-----------SGGRRKIFEN-----GNLLISPVSRD 152 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~---~-----------~~~~~~~~~~-----~~l~i~~v~~~ 152 (505)
..+.+|++++|.|.+.+.+ .+.+.|++. +.. + . ...++.+..+ .+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (257)
T 3bn9_D 10 GLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE 89 (257)
T ss_dssp EEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred EEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence 5688999999999998765 568999984 211 1 0 1245554432 26999999999
Q ss_pred CCEEEEEEEEcCCCc-------------eeeeEEEEEEe----CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEE
Q psy14886 153 DSGIYSCTATNVHGM-------------DESKGRLIVLH----GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 215 (505)
Q Consensus 153 d~G~y~C~~~~~~g~-------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~ 215 (505)
|+|.|.|.+.+..|. ......|.|.. +|.+.. ..+...+..|..++|.|.+.+..+..+.+.
T Consensus 90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~-~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~ 168 (257)
T 3bn9_D 90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFP-LAPSSKSTSGGTAALGCLVKDYFPEPVTVS 168 (257)
T ss_dssp GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECC-CCC-----------CCCEEEEEBSSCCEEE
T ss_pred hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEE-ecCcccccCCCcEEEEEEEeeEECCCcEEE
Confidence 999999999987641 11235777764 233222 222233567889999999998633345788
Q ss_pred EEeCCEEecCCCCCc--ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE
Q psy14886 216 WTHNGVRIGNMDLNE--LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268 (505)
Q Consensus 216 w~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~ 268 (505)
|++++..+....... .....+ ...+.|.|.....++ |.|+|.|.|......
T Consensus 169 W~k~g~~~~~~~~~~~~~~~g~y-~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~ 221 (257)
T 3bn9_D 169 WNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 221 (257)
T ss_dssp ETTTTCCSSCEECCCEECTTSCE-EEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred EeeCCCcCCcEecCCeEcCCCCE-EEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence 999876532110000 000011 112345666666567 999999999765533
|
| >3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=101.14 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+.+|.++++...+.++|.|+|++|. +.|.+|.|+|+..+ ...+....+. ...+.+.|.+|.|++.|.|+|
T Consensus 2 p~~P~~l~~~~~~~~sv~lsW~pP~-----~~i~~Y~v~y~~~~~~~~~~~~~~~----~~~t~~~i~~L~p~t~Y~~~V 72 (100)
T 3b83_A 2 LQPPFNIKVTNITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPSDETTVDLT----SSITSLTLTNLEPNTTYEIRI 72 (100)
T ss_dssp CCCCEEEEEESCCSSCEEEEEECCS-----SCCSEEEEEEEESSCTTTCEEEEEC----TTEEEEEECSCCTTCEEEEEE
T ss_pred CccCCccEEEEecCCEEEEEEcCCc-----ccCCEEEEEEEECCCCCCceEEEEC----CcceEEEECCCCCCCEEEEEE
Confidence 5689999999999999999999842 26999999999876 3344432222 245788999999999999999
Q ss_pred EEecCCCCCCCCceEEE
Q psy14886 466 QAINDVGPGPESEVVTI 482 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~ 482 (505)
.|+|..|.|+++.....
T Consensus 73 ~A~n~~g~s~p~~~~~~ 89 (100)
T 3b83_A 73 VARNGQQYSPPVSTTFT 89 (100)
T ss_dssp EEEETTEECCCEEEEEE
T ss_pred EEEeCCCCCCCEEEEEE
Confidence 99999999998876644
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=125.04 Aligned_cols=169 Identities=20% Similarity=0.313 Sum_probs=101.1
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEECC--E---EC-----cCC----CCCCCCCCcEEEEC------CeEEEEcCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRNG--E---LL-----NSE----TLPLEDQDRYFIQD------NVLTIRYLN 56 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~~--~---~l-----~~~----~~~~~~~~~~~~~~------~~L~i~~~~ 56 (505)
+.+|++++|.|.+.+.+ ...|.|+|.. . .+ ... .......+|+.+.. .+|.|.+++
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 91 (232)
T 3qhz_H 12 VKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMD 91 (232)
T ss_dssp ECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred ECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCC
Confidence 46899999999997532 2344999832 1 11 000 01112346776632 269999999
Q ss_pred CCCCCeEEEEEEEccc--------CceEeeEEEEEEe---cCCCccCCCCCceEEeeCCCeEEEEeecCCC-C-CCeEEE
Q psy14886 57 PERDPAMYQCRAKNQL--------KTRYSSAQLRVLT---LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P-KPKFVW 123 (505)
Q Consensus 57 ~~~d~G~Y~C~~~~~~--------~~~~~~~~l~v~~---~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p-~~~i~W 123 (505)
.+|+|.|.|.+.+.. ........|.|.. .+|.+.... +...+..|+.++|.|.+.+. | ...+.|
T Consensus 92 -~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~~~~P~~~~v~W 168 (232)
T 3qhz_H 92 -PVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSW 168 (232)
T ss_dssp -GGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEEC--C-------CEEEEEEEEEEEBSSCCEEEE
T ss_pred -hhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEec--ccccccCCCcEEEEEEEeeEeCCCeEEEE
Confidence 999999999998652 1122235566652 123332111 22235679999999999875 3 347889
Q ss_pred EECCEEecC---------CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 124 KKDGNIIGS---------GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 124 ~~~g~~~~~---------~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
+++|..+.. +..+.. ...|.|......| |.|+|.|.+..+.......+.
T Consensus 169 ~~~g~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~ 226 (232)
T 3qhz_H 169 NSGALTSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE 226 (232)
T ss_dssp GGGTBCTTEEECCCEECTTSCEEE--EEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred EECCEecceeeccceeCCCCCEEE--EEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeC
Confidence 998863311 111111 1247888888888 999999999876655544443
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=104.58 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=79.4
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|++++..+....++.+.. ...|.|.++..+|+|.|+|.|.|
T Consensus 7 pp~i~~~~--~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 7 GPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84 (114)
T ss_dssp CCEESCCC--CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CCEEEeCC--CCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence 56665544 45779999999999999999999999999999887766666553 24699999999999999999999
Q ss_pred CCCceeeeEEEEEEeCCeee
Q psy14886 164 VHGMDESKGRLIVLHGPSYY 183 (505)
Q Consensus 164 ~~g~~~~~~~l~v~~~p~~~ 183 (505)
..|.....+.|.|...|...
T Consensus 85 ~~g~~~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 85 KLGSRQAQVNLTVVDKPDPP 104 (114)
T ss_dssp SSCEEECCEEEEEECSCSCC
T ss_pred CCCcEEEEEEEEEECCCCCC
Confidence 99998888999998766543
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=119.47 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=100.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECcC---CCCCCCCCCcEEEEC-------CeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLNS---ETLPLEDQDRYFIQD-------NVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~~---~~~~~~~~~~~~~~~-------~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.+|++++|.|.+.+.+ ..+.|+|.+ ..+.. ........+|+.+.. .+|.|.+++ .+|+|.|.|.+
T Consensus 13 v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~ 90 (207)
T 1ypz_E 13 LHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQ-LEDSGTYFCAA 90 (207)
T ss_dssp EETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCC-GGGCEEEEEEE
T ss_pred EccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCC-HHHCEEEEEEE
Confidence 46899999999997644 489999953 11110 000001235666542 389999999 99999999999
Q ss_pred EcccC---------c-e-EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEECCEEecCC-C
Q psy14886 69 KNQLK---------T-R-YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKKDGNIIGSG-G 134 (505)
Q Consensus 69 ~~~~~---------~-~-~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~~g~~~~~~-~ 134 (505)
.+..+ . . ...+.|.|... ..... .+.+.+..+ .+.|.|.+.+. |. +.+.|+++ ..+... .
T Consensus 91 ~~~~~~~p~~~~~~~~~~~~~t~L~V~~~-~~~~~---~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~ 164 (207)
T 1ypz_E 91 DTWHISEGYELGTDKLVFGQGTQVTVEPK-SQPPA---KPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEFDP 164 (207)
T ss_dssp ECBCCCTTCCCCCCCCEECCCEEEEEECC-CCCCC---CCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEECCC
T ss_pred ecCCcccccccccceeeecCccEEEEccC-CCCCC---CCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCCcc
Confidence 87632 1 1 12357777642 11111 223333333 37999999875 44 69999999 666433 2
Q ss_pred cEEEeeCCCEEEcCCCC-CCCEEEEEEEEcCCCce
Q psy14886 135 RRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMD 168 (505)
Q Consensus 135 ~~~~~~~~~l~i~~v~~-~d~G~y~C~~~~~~g~~ 168 (505)
......++.+.+..... .|.|.|+|.+.+..+..
T Consensus 165 ~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 165 AIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred ceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence 22234456776655544 67899999999876544
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-13 Score=117.19 Aligned_cols=169 Identities=16% Similarity=0.204 Sum_probs=105.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--E--E-e------------cCCCcEEEee----CCCEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--N--I-I------------GSGGRRKIFE----NGNLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~--~-~------------~~~~~~~~~~----~~~l~i~~v~~~d~G 155 (505)
..+.+.+|++++|.|.+. .+.+.+.|+++. . . + ....++.+.. +.+|.|.+++.+|+|
T Consensus 11 ~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G 89 (252)
T 1oga_E 11 KYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTA 89 (252)
T ss_dssp SEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCE
T ss_pred CeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCE
Confidence 557799999999999985 356799999842 1 1 1 0124555542 247999999999999
Q ss_pred EEEEEEEcCC---CceeeeEEEEEEe------CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 156 IYSCTATNVH---GMDESKGRLIVLH------GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 156 ~y~C~~~~~~---g~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
.|.|.+.+.. ........|.|.. +|.+....+....+..|+.+.|.|.+.+..++.+.+.|+++|..+...
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~ 169 (252)
T 1oga_E 90 FYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 169 (252)
T ss_dssp EEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSS
T ss_pred EEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCC
Confidence 9999999862 1112234566653 232222222222334688999999999864434688899999887643
Q ss_pred CCCcc--------cCCeeeecCCeEEEecCCC-CCCEEEEEEEEecCCc
Q psy14886 227 DLNEL--------ETPNINIDGGLLEITNASF-ADAGEYECVVKSTVGK 266 (505)
Q Consensus 227 ~~~~~--------~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~n~~g~ 266 (505)
..... .........+.|.|..... ++.+.|+|.|.|....
T Consensus 170 ~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 170 VSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp EEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred cccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 21000 0000111123466665544 3678999999997654
|
| >2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=101.53 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=73.0
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
.+.+|.++.+...+.+++.|+|+++ . +.+.+|.|+|+..+ .+.+....+.. ..+.+.|.+|.|++.|.|+
T Consensus 2 ~p~~P~~l~v~~~t~~sv~lsW~~p--~---~~i~~Y~v~y~~~~~~~~~~~~~v~~----~~~~~~l~~L~p~t~Y~~~ 72 (104)
T 2rb8_A 2 RLDAPSQIEVKDVTDTTALITWMPP--S---QPVDGFELTYGIKDVPGDRTTIDLTE----DENQYSIGNLKPDTEYEVS 72 (104)
T ss_dssp CCCCCEEEEEESCCSSCEEEEEECC--S---SCCSEEEEEEEETTCTTCCEEEEEET----TCCEEEECSCCTTCEEEEE
T ss_pred CCCCCCccEEEEecCCeEEEEEcCC--C---CccceEEEEEEECcCCCceEEEEcCC----CcCEEEeCCCCCCCEEEEE
Confidence 3578999999999999999999983 2 67999999999875 45565443332 3467899999999999999
Q ss_pred EEEecCCCCCCCCceEEEeecceEE
Q psy14886 465 VQAINDVGPGPESEVVTIWHDPLVI 489 (505)
Q Consensus 465 v~a~n~~G~g~~s~~~~~~t~p~~~ 489 (505)
|.|+|..|.|.++.. .+.|.+..+
T Consensus 73 V~A~~~~g~s~p~~~-~~~T~~~~~ 96 (104)
T 2rb8_A 73 LISRRGDMSSNPAKE-TFTTGLAAA 96 (104)
T ss_dssp EEEEETTEECCCEEE-EEECCC---
T ss_pred EEEEeCCccCCCEEE-EEECCCCcc
Confidence 999999999987653 466665544
|
| >1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=107.91 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=77.2
Q ss_pred CCCCCCcee--eeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 385 KPYQAPSRI--GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 385 ~p~~~P~~~--~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
.+|.+|.++ .+...+.++|.|.|++ +.+.+++|++|.|+|+..+ ..|........ ...+.+.|.+|.|++.|.
T Consensus 16 ~~P~~P~~~~~~~~~~~~~sv~l~W~~--p~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~ 90 (121)
T 1wf5_A 16 QLPHAPEHPVATLSTVERRAINLTWTK--PFDGNSPLIRYILEMSENN-APWTVLLASVD--PKATSVTVKGLVPARSYQ 90 (121)
T ss_dssp CCCCCCSSCEEEECSSSTTEEEEECCC--CCCCSSCEEEEEEEEECTT-CCCEEEESSCC--TTCCEEEEESCCTTCEEE
T ss_pred eCCccCCCcceeeEeccCCEEEEEEcC--CCCCCCcceEEEEEEEcCC-CCceEeEcccC--CCccEEEECCcCCCCEEE
Confidence 456788888 7777888999999998 4678889999999999876 77875432222 234678899999999999
Q ss_pred EEEEEecCCCCCCCCceEE-Eeec
Q psy14886 463 VKVQAINDVGPGPESEVVT-IWHD 485 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~-~~t~ 485 (505)
|||.|+|.+|.|++|+.+. +.|.
T Consensus 91 frV~A~n~~G~s~~S~~~~~~~t~ 114 (121)
T 1wf5_A 91 FRLCAVNDVGKGQFSKDTERVSLP 114 (121)
T ss_dssp EEEEEEESSCEEEECCCCSCEECC
T ss_pred EEEEEEcCCccCCCcCCcceeEcC
Confidence 9999999999999999874 4443
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=103.98 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=67.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|++++|.|.+.|.|.+.+.|+|++..+. ...++.+. ..+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 19 v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~g~~~ 90 (114)
T 2cqv_A 19 VRAGESVELFGKVTGTQPITCTWMKFRKQIQ-------ESEHMKVENSENGSKLTILAAR-QEHCGCYTLLVENKLGSRQ 90 (114)
T ss_dssp EETTCCEEEEEEEESSSSCEEEEEESSSBCC-------CSSSEEEEECSSEEEEEETTCC-TTTCEEEEEEEECSSCEEE
T ss_pred EeCCCeEEEEEEEEcCCCCEEEEEECCEECc-------CCCCEEEEEcCCEEEEEECCCC-hhcCEEEEEEEEECCCcEE
Confidence 4689999999999999999999999999887 33466554 4689999999 9999999999999999888
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 91 ~~~~l~V~~ 99 (114)
T 2cqv_A 91 AQVNLTVVD 99 (114)
T ss_dssp CCEEEEEEC
T ss_pred EEEEEEEEC
Confidence 889999986
|
| >2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=103.23 Aligned_cols=93 Identities=24% Similarity=0.393 Sum_probs=76.3
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC-CcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
.+|.+|.++.+.....+++.|.|+++ .++.+.+|.|+|+..+.. .|.... ....+.+.|.+|.|++.|.|
T Consensus 6 ~~P~~P~~~~~~~~~~~sv~l~W~~~----~~~~i~~Y~v~~~~~~~~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~ 76 (106)
T 2dju_A 6 SGPKPPIDLVVTETTATSVTLTWDSG----NSEPVTYYGIQYRAAGTEGPFQEVD-----GVATTRYSIGGLSPFSEYAF 76 (106)
T ss_dssp CSCCCCEEEEEEEEETTEEEEEEECC----CSSCCSEEEEEEEETTCCSCCCCBC-----CCCSSEEEEESCCTTCEEEE
T ss_pred cCCcCCCCcEEEeccCCEEEEEEcCC----CCCCceEEEEEEEECCCCCCeEEcc-----CCCccEEEEeCCCCCcEEEE
Confidence 34478999999888899999999983 367899999999987743 555321 12345788999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeecc
Q psy14886 464 KVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+|+|+|.+|.|++|+.+.+.|.+
T Consensus 77 ~V~A~n~~G~~~~S~~~~~~T~~ 99 (106)
T 2dju_A 77 RVLAVNSIGRGPPSEAVRARTGE 99 (106)
T ss_dssp EEEEECSSCBCCCCCCEEEECCC
T ss_pred EEEEEeCCccCCCcccEEeEcCC
Confidence 99999999999999999988864
|
| >2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=123.28 Aligned_cols=205 Identities=17% Similarity=0.232 Sum_probs=131.5
Q ss_pred CEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCC------CCCceEEEEEEeCCCCCeEE
Q psy14886 253 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG------RPITHYKIIARTNWNSTWFN 326 (505)
Q Consensus 253 ~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~------~~i~~y~v~~~~~~~~~w~~ 326 (505)
...|...+.|..|. ...+.+.-...|.||.++.+.... +.+.|+|++|.... .....|.|+|+..+ ..|..
T Consensus 84 ~~~~~v~~~~~~~~-~~~~~~~~~v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~~w~~ 160 (419)
T 2gys_A 84 VDYFSFQPDRPLGT-RLTVTLTQHVQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-DSWED 160 (419)
T ss_dssp EEEEEEEESSCCCE-EEEEEGGGSBCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT-SCSTT
T ss_pred ccEEEEeCCccccc-cceEcHHHcccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCC-CChhh
Confidence 34455555455443 222222223578899999887765 69999999987532 24578999999886 66754
Q ss_pred eeeccccceeeeecCceeeEEe-eeccCCceeEEEEEEEcCC---CcCCCCCCCCC--ccCCCCCCCCCCceeeeecccc
Q psy14886 327 VSEHVIGKEVDRYTGRKEASIE-NVLVPWSTYEFKVIAGNEL---GYGEPSSPSPQ--YNTPADKPYQAPSRIGGGGGKI 400 (505)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~~~~y~~~v~a~n~~---G~~~~s~~~~~--~~t~~~~p~~~P~~~~~~~~~~ 400 (505)
...... ......+. .+|.|++.|+|||+|.|.. +.|.+|+++.. +.+.++. +.+|.++.......
T Consensus 161 ~~~~~~--------~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~-~~~p~~l~c~~~~~ 231 (419)
T 2gys_A 161 AAILLS--------NTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD-EAQPQNLECFFDGA 231 (419)
T ss_dssp CEEEEE--------SSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCC-TTSCEEEEEEECSS
T ss_pred eeeecc--------cceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccc-cCCCceEEEEECCc
Confidence 422100 11122232 2499999999999999975 45777776544 3455555 56899999988888
Q ss_pred ccEEEEEEeCCccccCCCCceEEEEEEEcCC-C----CcEEE----Eeeec-C--ceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKND-T----EFQSE----TLKEY-G--NVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 401 ~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~-~----~~~~~----~~~~~-~--~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+.+.+.|++ .....+ ..+|.|.|+.... + +|... ..... . ....+.+.+.+|.+.+.|.|+|.|.
T Consensus 232 ~~l~c~W~~--~~~~~~-~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~ 308 (419)
T 2gys_A 232 AVLSCSWEV--RKEVAS-SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPR 308 (419)
T ss_dssp SEEEEEEEE--EHHHHT-TCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEEC
T ss_pred eEEEeEEEC--CCCCCC-ceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEEEEc
Confidence 899999998 333333 3679999987642 1 22211 11100 0 1234577899999999999999998
Q ss_pred cCCC
Q psy14886 469 NDVG 472 (505)
Q Consensus 469 n~~G 472 (505)
+..|
T Consensus 309 ~~~~ 312 (419)
T 2gys_A 309 RAEK 312 (419)
T ss_dssp CCCE
T ss_pred cCCc
Confidence 6555
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=101.27 Aligned_cols=91 Identities=26% Similarity=0.444 Sum_probs=75.9
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEec-CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~-~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+|.+...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...++....+++|.|.++..+|+|.|+|.|.|..
T Consensus 8 ~P~i~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 85 (100)
T 2edj_A 8 PPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 85 (100)
T ss_dssp SCEEEECC--CCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred CCEEEeCc--CCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence 34444433 44678899999999999999999999999998886 3455666667889999999999999999999999
Q ss_pred CceeeeEEEEEEeC
Q psy14886 166 GMDESKGRLIVLHG 179 (505)
Q Consensus 166 g~~~~~~~l~v~~~ 179 (505)
|.....+.|.|..+
T Consensus 86 g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 86 GETSWSAVLDVTES 99 (100)
T ss_dssp CCCBCCEEEEEESC
T ss_pred CCEEEEEEEEEecC
Confidence 99888888888654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 505 | ||||
| d1ueya_ | 127 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 2e-16 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 3e-16 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 3e-08 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 6e-08 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 3e-16 | |
| d1x4za1 | 108 | b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) { | 0.004 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-15 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-09 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 1e-05 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 5e-15 | |
| d1uema_ | 117 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 0.001 | |
| d2dtge2 | 196 | b.1.2.1 (E:593-807) Insulin receptor {Human (Homo | 1e-14 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 1e-14 | |
| d1wf5a1 | 108 | b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) | 2e-04 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 9e-14 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 4e-08 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 4e-06 | |
| d1wisa1 | 111 | b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) | 1e-13 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-13 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 2e-06 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 5e-05 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 3e-13 | |
| d1x5ga1 | 103 | b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [ | 6e-05 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-13 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-08 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-07 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 5e-13 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 4e-07 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 1e-04 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 9e-13 | |
| d1wfna1 | 106 | b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) | 2e-04 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 9e-13 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 2e-05 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 4e-04 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 2e-12 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 3e-06 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 0.001 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 2e-12 | |
| d1x3da1 | 105 | b.1.2.1 (A:8-112) Fibronectin type-III domain cont | 5e-05 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 3e-12 | |
| d1x5la1 | 98 | b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human | 3e-05 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 4e-12 | |
| d1x5ya1 | 98 | b.1.2.1 (A:8-105) Myosin binding protein C, fast-t | 1e-04 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-12 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-05 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-04 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 6e-12 | |
| d1wfoa1 | 117 | b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) | 2e-09 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 8e-12 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-06 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 0.002 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 9e-12 | |
| d2crza1 | 97 | b.1.2.1 (A:8-104) Fibronectin type-III domain cont | 5e-05 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 1e-11 | |
| d1va9a1 | 109 | b.1.2.1 (A:8-116) Down syndrome cell adhesion mole | 2e-10 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 2e-11 | |
| d1uena_ | 125 | b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens | 3e-09 | |
| d2ic2a1 | 107 | b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit | 6e-11 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 7e-11 | |
| d1x5ha1 | 119 | b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [ | 3e-09 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 1e-10 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 8e-05 | |
| d1qg3a2 | 103 | b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum | 2e-10 | |
| d1qg3a2 | 103 | b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum | 0.003 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 2e-10 | |
| d2dn7a1 | 94 | b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p | 3e-05 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 2e-10 | |
| d2djsa1 | 95 | b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human | 3e-04 | |
| d2crma1 | 107 | b.1.2.1 (A:8-114) Fibronectin type-III domain cont | 3e-10 | |
| d1cfba1 | 100 | b.1.2.1 (A:610-709) Neuroglian, two amino proximal | 3e-10 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 5e-10 | |
| d1x5ka1 | 111 | b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [ | 1e-08 | |
| d1bpva_ | 104 | b.1.2.1 (A:) Type I titin module {Human (Homo sapi | 8e-10 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 9e-10 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-05 | |
| d1wk0a_ | 137 | b.1.2.1 (A:) Fibronectin type-III domain containin | 1e-09 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 1e-09 | |
| d1x5za1 | 102 | b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p | 0.003 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 2e-09 | |
| d1x5fa1 | 107 | b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [ | 1e-05 | |
| d1bqua2 | 115 | b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki | 2e-09 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-09 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 4e-06 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 4e-04 | |
| d1x4xa1 | 93 | b.1.2.1 (A:8-100) Fibronectin type-III domain cont | 3e-09 | |
| d1x4xa1 | 93 | b.1.2.1 (A:8-100) Fibronectin type-III domain cont | 0.001 | |
| d1cd9b1 | 107 | b.1.2.1 (B:1-107) Granulocyte colony-stimulating f | 3e-09 | |
| d2dtge1 | 102 | b.1.2.1 (E:808-909) Insulin receptor {Human (Homo | 4e-09 | |
| d1x5xa1 | 96 | b.1.2.1 (A:8-103) Fibronectin type-III domain cont | 4e-09 | |
| d2cuia1 | 101 | b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) | 1e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-08 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 3e-04 | |
| d1j8ka_ | 94 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 1e-08 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 2e-08 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 9e-07 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 0.002 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-08 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 3e-04 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 0.002 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 2e-08 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 3e-08 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 3e-08 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 8e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-08 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-04 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-08 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-04 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 6e-04 | |
| d2vkwa2 | 93 | b.1.2.1 (A:601-693) Neural cell adhesion molecule | 4e-08 | |
| d1fnfa3 | 89 | b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m | 5e-08 | |
| d1iarb2 | 101 | b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch | 6e-08 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 6e-08 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 0.001 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 0.002 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 8e-08 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 4e-05 | |
| d1qr4a2 | 88 | b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu | 8e-08 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 9e-08 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-05 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 3e-04 | |
| d1wfta_ | 123 | b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus | 1e-07 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 1e-07 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 0.001 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 1e-07 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 2e-05 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 0.004 | |
| d1fnfa1 | 94 | b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m | 2e-07 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 2e-07 | |
| d1tdqa2 | 92 | b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu | 2e-07 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 2e-07 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 0.002 | |
| d1cfba2 | 105 | b.1.2.1 (A:710-814) Neuroglian, two amino proximal | 2e-07 | |
| d1cfba2 | 105 | b.1.2.1 (A:710-814) Neuroglian, two amino proximal | 2e-06 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 2e-07 | |
| d1fnha3 | 89 | b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod | 3e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 3e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 0.001 | |
| d1cd9b2 | 106 | b.1.2.1 (B:108-213) Granulocyte colony-stimulating | 3e-07 | |
| d1wfua_ | 120 | b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat | 3e-07 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 4e-07 | |
| d1x4ya1 | 101 | b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) { | 1e-04 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 5e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 8e-05 | |
| d2ibga1 | 95 | b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit | 5e-07 | |
| d1fnha1 | 90 | b.1.2.1 (A:3-92) Fibronectin, different Fn3 module | 6e-07 | |
| d2cspa1 | 117 | b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho | 7e-07 | |
| d1tena_ | 90 | b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId | 7e-07 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 8e-07 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 0.004 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 8e-07 | |
| d1fnaa_ | 91 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 1e-06 | |
| d1tdqa3 | 86 | b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic | 1e-06 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 1e-06 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 0.002 | |
| d1qr4a1 | 87 | b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) | 1e-06 | |
| d1fnha2 | 90 | b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu | 2e-06 | |
| d1x5aa1 | 94 | b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse | 2e-06 | |
| d1x5aa1 | 94 | b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse | 6e-04 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 2e-06 | |
| d1k85a_ | 88 | b.1.2.1 (A:) Fibronectin type III domain from chit | 3e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 3e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 7e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 3e-04 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 4e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 5e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 0.001 | |
| d1owwa_ | 93 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 5e-06 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 5e-06 | |
| d1fnfa2 | 91 | b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m | 6e-06 | |
| d2b5ib2 | 104 | b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch | 7e-06 | |
| d1wj3a_ | 117 | b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s | 8e-06 | |
| d1wj3a_ | 117 | b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s | 3e-04 | |
| d2cuma1 | 93 | b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) | 2e-05 | |
| d1l6za2 | 96 | b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, | 2e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 2e-05 | |
| d1x5ja1 | 100 | b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [ | 2e-05 | |
| d1qg3a1 | 92 | b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum | 2e-05 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-05 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 0.003 | |
| d2fnba_ | 95 | b.1.2.1 (A:) Fibronectin, different Fn3 modules {H | 4e-05 | |
| d1n26a3 | 104 | b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c | 4e-05 | |
| d2d9qb2 | 105 | b.1.2.1 (B:204-308) Granulocyte colony-stimulating | 4e-05 | |
| d3d48r2 | 104 | b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom | 4e-05 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 6e-05 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 8e-05 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 0.004 | |
| d1tdqa1 | 93 | b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) | 9e-05 | |
| d1f6fb2 | 103 | b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu | 1e-04 | |
| d2haza1 | 101 | b.1.2.1 (A:489-589) Neural cell adhesion molecule | 1e-04 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 1e-04 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 2e-04 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 2e-04 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 2e-04 | |
| d2cuha1 | 102 | b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) | 2e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 2e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 7e-04 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 3e-04 | |
| d1fyhb1 | 98 | b.1.2.1 (B:12-109) Interferon-gamma receptor alpha | 3e-04 | |
| d1uc6a_ | 109 | b.1.2.1 (A:) Ciliary neurotrophic factor receptor | 3e-04 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 3e-04 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 4e-04 | |
| d1x5ia1 | 113 | b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [ | 6e-04 | |
| d1ujta_ | 120 | b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens | 6e-04 | |
| d1hnfa1 | 101 | b.1.1.1 (A:4-104) CD2, first domain {Human (Homo s | 0.001 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 0.002 | |
| d2nxyb2 | 84 | b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H | 0.002 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 0.002 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 0.003 | |
| d1eaja_ | 124 | b.1.1.1 (A:) Coxsackie virus and adenovirus recept | 0.002 |
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.9 bits (180), Expect = 2e-16
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S T V P P +++ + S + WT G N PIT + I +
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+G + + N L P+ Y F+V+A N +G PS S QY T A +P
Sbjct: 66 -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117
Query: 388 QAPSRIGGGG 397
+ P+ G
Sbjct: 118 KNPTSGPSSG 127
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 71.7 bits (175), Expect = 3e-16
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147
P ++++P E +G +VTI C P P VW + + G R + L+I
Sbjct: 3 PKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG--RATVTDSGLVIK 59
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
V D G Y C ATN HG + + V
Sbjct: 60 GVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 49.0 bits (116), Expect = 3e-08
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D+T C+ G+P W N + R + D+ L I+ + D Y
Sbjct: 20 DVTIPCKVTGLPAPNVVWSHNAKP--------LSGGRATVTDSGLVIKGVKNG-DKGYYG 70
Query: 66 CRAKNQLKTRYSSAQLRV 83
CRA N+ +Y ++V
Sbjct: 71 CRATNEHGDKYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 48.2 bits (114), Expect = 6e-08
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P Y ++ I + +++ + C +V + + L +
Sbjct: 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH----------NAKPLSGGRATVT 52
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L I D G Y C + G +T V V
Sbjct: 53 DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.1 bits (176), Expect = 3e-16
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
PP P + +TS + W G PI +++ + + ++ I
Sbjct: 10 PPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 69
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
L +Y+F+V A N LG EPS+PS Y
Sbjct: 70 SVEITG-------LEKGISYKFRVRALNMLGESEPSAPSRPYVV 106
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.1 bits (80), Expect = 0.004
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
S P +P + P P+ + ++W P I KK
Sbjct: 1 SQPDHGRLSPPEAP-DRPTISTASETSV---YVTWIP---RGNGGFPIQSFRVEYKKLKK 53
Query: 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
V I Y+ +V+A+N +G S
Sbjct: 54 VGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSA 99
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 3e-15
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENGNL 144
P + P + G +V +F W K I K+ L
Sbjct: 1 PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
I ++ G Y+ N G +++ L V+ P PP T
Sbjct: 59 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-----PPAGT 100
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 2e-09
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
Q P + A +++L + + ++ ++ + +G L
Sbjct: 5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHM-----KVENSENGSKLT 59
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV 285
I A G Y +V++ +G + + V P P G
Sbjct: 60 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 100
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 1e-05
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ + G +T +W + + + + + LTI E Y
Sbjct: 17 SVELFGKVTGTQPITCTWMKFRKQIQESE---HMKVENSENGSKLTILAARQE-HCGCYT 72
Query: 66 CRAKNQLKTRYSSAQLRVLTL--KPSFK 91
+N+L +R + L V+ P+
Sbjct: 73 LLVENKLGSRQAQVNLTVVDKPDPPAGT 100
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 5e-15
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 9/119 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S+ + PG P QV +V K S T+ W G P + Y I A + S +
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ + + G L P + Y F V A N G +PS S T P
Sbjct: 65 VANHVKTTLYTVRG---------LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.001
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429
G S Y +D P PS+ +++SW+P P Y I +
Sbjct: 1 GSSGSSGKNY-DLSDLP-GPPSKPQVTDVTKNSVTLSWQPGT--PGTLPASAYIIEAFSQ 56
Query: 430 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
+ + V + T Y V+AIN G S +
Sbjct: 57 SVSNSWQTVANHVKTTLYTVRGLRP---NTIYLFMVRAINPQGLSDPSPMS 104
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 1e-14
Identities = 19/205 (9%), Positives = 45/205 (21%), Gaps = 17/205 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P +P V + ++W + ITHY + + ++ +
Sbjct: 2 NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL 61
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397
T+ + + + + + +
Sbjct: 62 PSR---------------TWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEE 106
Query: 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457
+ + + ++ N V+ F
Sbjct: 107 SSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHF- 165
Query: 458 YTEYEVKVQAINDVGPGPESEVVTI 482
T Y +++QA N P V
Sbjct: 166 -TGYRIELQACNQDTPEERCSVAAY 189
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (164), Expect = 1e-14
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 272 TVIVEGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSE 329
+ V P P V + + + WT P+ Y + N ++
Sbjct: 4 HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLAS 63
Query: 330 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
G LVP +Y+F++ A N++G G+ S + + + P
Sbjct: 64 VDPKATSVTVKG---------LVPARSYQFRLCAVNDVGKGQFSKDTERVSLP 107
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
++++W + I +N+ + V+ Y+
Sbjct: 29 INLTWTK---PFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVP--ARSYQ 83
Query: 463 VKVQAINDVGPGPESEVVTIWHDP 486
++ A+NDVG G S+ P
Sbjct: 84 FRLCAVNDVGKGQFSKDTERVSLP 107
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 64.8 bits (157), Expect = 9e-14
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 88 PSFKKRP-LESETYA-GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----EN 141
P + +E +A V C P P W K+G R + ++
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+L++ V D G Y+C N +G L V+
Sbjct: 62 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 48.6 bits (115), Expect = 4e-08
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMY 64
+ + C A G P T W +NG+ E Y +++ ++ + D Y
Sbjct: 22 TVKFRCPAGGNPMPTMRWLKNGKEFKQE----HRIGGYKVRNQHWSLIMESVVPSDKGNY 77
Query: 65 QCRAKNQLKTRYSSAQLRVL 84
C +N+ + + L V+
Sbjct: 78 TCVVENEYGSINHTYHLDVV 97
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 43.3 bits (101), Expect = 4e-06
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 184 EQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 242
E++ ++ + A ++ RC A + + W NG + +
Sbjct: 8 EKMEKRLHAVPAANTVKFRCPAGGNPMPTM--RWLKNGKEFKQEH--RIGGYKVRNQHWS 63
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L + + +D G Y CVV++ G I+ + V
Sbjct: 64 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.4 bits (158), Expect = 1e-13
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 269 TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 328
T ++ + PG P + + + S T+Q+ G I+ + + A+
Sbjct: 1 TISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWL 60
Query: 329 EHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
+ + L P++ Y F++ N +G PS PS + T
Sbjct: 61 LIHQLSNEPDAR---SMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 109
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.7 bits (154), Expect = 3e-13
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-----ENG 142
P+ + R A G +VT+ C+ + P+P W KDG I + ++
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
L I V ++D Y C A N G ++ L V
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 98
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.1 bits (103), Expect = 2e-06
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMY 64
+T C+A G P+ T SW ++G ED +++ D+ + N ++ D A Y
Sbjct: 22 SVTLVCDADGFPEPTMSWTKDG---EPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 78
Query: 65 QCRAKNQLKTRYSSAQLRVL 84
C A+N+ + +S L+V
Sbjct: 79 VCIAENKAGEQDASIHLKVF 98
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 5e-05
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 186 LPPKI---------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
+PP + T +++ L C A + WT +G I N + ++ +
Sbjct: 2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM--SWTKDGEPIENEEEDDEKH-IF 58
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ D L I N D EY C+ ++ G+ + V
Sbjct: 59 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.6 bits (154), Expect = 3e-13
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 15/110 (13%)
Query: 266 KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF 325
++ T+ V + PG ++ TS T+ W + I +YK+
Sbjct: 1 RVETQPEVQL---PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQ 57
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+V ++ L ++ Y F+V+A N+ G G +
Sbjct: 58 DVDVSSHSYTING------------LKKYTEYSFRVVAYNKHGPGVSTPD 95
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 6e-05
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
++++WE N YK+++ +K + Q +V I YTEY
Sbjct: 27 ITVTWET--PVSGNGEIQNYKLYYMEKGTDKEQ------DVDVSSHSYTINGLKKYTEYS 78
Query: 463 VKVQAINDVGPGPESEVVTI 482
+V A N GPG + V +
Sbjct: 79 FRVVAYNKHGPGVSTPDVAV 98
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 63.5 bits (153), Expect = 4e-13
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 17/107 (15%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------- 132
+P + L + GG+V C + +P W K GS
Sbjct: 4 RPILQ-AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62
Query: 133 --GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
G E L I V+ +D+G Y+C A N G+ L VL
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 50.0 bits (118), Expect = 2e-08
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW--THNGVRIGNMDLNELETPN 235
H P LP + +++ C +++ + +I NG + G L L+
Sbjct: 3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62
Query: 236 INI------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ +L I N +F DAGEY C+ +++G + V
Sbjct: 63 AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----------DNVLTIRYL 55
D+ + C+ + W ++ E S+ P ++ VL IR +
Sbjct: 22 DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNV 81
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVL 84
E D Y C A N + + SA L VL
Sbjct: 82 TFE-DAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 62.5 bits (151), Expect = 5e-13
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147
PS K + ++TYA G VT+ C P P+ W+K + + L I
Sbjct: 5 PSIKAK-FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT---SKWLSSEPLLHIQ 60
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
V +D G Y C A N+ G D +GR+I+
Sbjct: 61 NVDFEDEGTYECEAENIKGRDTYQGRIII 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 46.0 bits (108), Expect = 4e-07
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ PS + P + + L C A + + +
Sbjct: 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT-----------SKWL 51
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
LL I N F D G YEC ++ G+ + + +I+
Sbjct: 52 SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.0 bits (90), Expect = 1e-04
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C AFG P W + ++ + +L I+ ++ E D Y+
Sbjct: 22 MVTLECFAFGNPVPQIKWRKL---------DGSQTSKWLSSEPLLHIQNVDFE-DEGTYE 71
Query: 66 CRAKNQLKTRYSSAQLRV 83
C A+N ++ +
Sbjct: 72 CEAENIKGRDTYQGRIII 89
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (151), Expect = 9e-13
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 9/107 (8%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
E PG G + E+ TS + W + +T Y+I +
Sbjct: 8 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYL----- 62
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
L +TY +V A G G+ S+ + P
Sbjct: 63 ----PNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP 105
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 6/101 (5%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
T D P + L +SW+ ++N Y+I W + N T +
Sbjct: 6 THEDVP-GPVGHLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRTNTRVTH-- 60
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
Y R+ T Y ++V A+ G G S
Sbjct: 61 -YLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 100
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 61.8 bits (149), Expect = 9e-13
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+P + ++T A G ++ C P+P V + R G L
Sbjct: 1 QPDWLDVI--TDTEADIGSDLRWSCVASGKPRPA-VRWLRDGQPLASQNRIEVSGGELRF 57
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
S + +DSG+Y C A N HG + L V
Sbjct: 58 SKLVLEDSGMYQCVAENKHGTVYASAELTV 87
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.0 bits (95), Expect = 2e-05
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
DL W+C A G P W R+G+ PL Q+R + L L E MYQ
Sbjct: 18 DLRWSCVASGKPRPAVRWLRDGQ-------PLASQNRIEVSGGELRFSKLVLEDS-GMYQ 69
Query: 66 CRAKNQLKTRYSSAQLRV 83
C A+N+ T Y+SA+L V
Sbjct: 70 CVAENKHGTVYASAELTV 87
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 37.2 bits (85), Expect = 4e-04
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ +L+ C A + V ++ I + GG L
Sbjct: 6 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ---------PLASQNRIEVSGGELR 56
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
+ D+G Y+CV ++ G + + V+
Sbjct: 57 FSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 88
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+P F +P T GEG + +C A+ P W KD + + NGN
Sbjct: 1 QPRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I+ V DD G Y+ A N +G E L V
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (102), Expect = 3e-06
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 5/94 (5%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P + ++ C V + + + N + L I
Sbjct: 8 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDR-----ELKQSVKYMKRYNGNDYGLTIN 62
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
D GEY K++ G + V
Sbjct: 63 RVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.4 bits (83), Expect = 0.001
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C +W ++ ++ RY D LTI + + D Y
Sbjct: 18 SANFYCRVIASSPPVVTWHKDD---RELKQSVKYMKRYNGNDYGLTINRVKGD-DKGEYT 73
Query: 66 CRAKNQLKTRYSSAQLRV 83
RAKN T+ L V
Sbjct: 74 VRAKNSYGTKEEIVFLNV 91
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (147), Expect = 2e-12
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P +P ++ K S T+QW + NG I ++ + + F
Sbjct: 8 SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEF---------- 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
Y G ++ L P +F++ A N+ G S
Sbjct: 58 CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEV 98
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 5e-05
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 7/102 (6%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
T + +P P+ L++ W+ + + + W + +
Sbjct: 6 TLSCEP-DIPNPPRIANRTKNSLTLQWKAPSD--NGSKIQNFVLEWDEGKGNGEFCQC-- 60
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+I + ++ A ND G SE V
Sbjct: 61 --YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLY 100
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (147), Expect = 3e-12
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
+ P ++ +TS ++ W + I Y+I S +
Sbjct: 1 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQ---SYSTLKAV 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
R T + L P + Y F+V A G G S
Sbjct: 58 TTRAT------VSG-LKPGTRYVFQVRARTSAGCGRFSQA 90
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+S+ W+ E+ N + Y+I + +K+ TL + T Y
Sbjct: 20 VSLLWQE--PEQPNGIILEYEIKYYEKDKEMQSYSTL----KAVTTRATVSGLKPGTRYV 73
Query: 463 VKVQAINDVGPGPESEVVTI 482
+V+A G G S+ + +
Sbjct: 74 FQVRARTSAGCGRFSQAMEV 93
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.3 bits (145), Expect = 4e-12
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + V +V T+ T++W G I Y + + W ++ + +
Sbjct: 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 60
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ F+V+ N G EP++
Sbjct: 61 FTVKDL---------PTGARILFRVVGVNIAGRSEPATLL 91
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.7 bits (89), Expect = 1e-04
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 4/77 (5%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
++ W P P Y + + + E+ V +
Sbjct: 18 TTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVPAN---KEPVERCGFTVKDLPTGARIL 73
Query: 463 VKVQAINDVGPGPESEV 479
+V +N G + +
Sbjct: 74 FRVVGVNIAGRSEPATL 90
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 60.3 bits (145), Expect = 5e-12
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL- 145
P +R G+G + P P+ W K+G I R + + +
Sbjct: 4 APKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC 61
Query: 146 ---ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
I V+ +DS A N+ G S L+V
Sbjct: 62 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.0 bits (95), Expect = 2e-05
Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 5/98 (5%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P +E++ T+ + R + + + + + N+
Sbjct: 5 PKIFERIQS-QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
I + + D+ + G+ S+ ++V+
Sbjct: 64 ----VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 37.2 bits (85), Expect = 6e-04
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D + G PD W++NG + + + V+ D A
Sbjct: 21 DAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT---GEDSASIM 77
Query: 66 CRAKNQLKTRYSSAQLRV 83
+A N S A L V
Sbjct: 78 VKAINIAGETSSHAFLLV 95
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 6e-12
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
+ PG P G+ EV TS + W A I Y+I R N + E +
Sbjct: 18 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSA 77
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
++ + L P S Y F++ A G+GE +
Sbjct: 78 -------RQYTATG-LKPESVYLFRITAQTRKGWGEAAEA 109
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 2e-09
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 5/116 (4%)
Query: 367 LGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 426
+G G PS P T D P P I + + + W+P N + Y+I
Sbjct: 2 IGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPP--AAPNGIILAYQITH 58
Query: 427 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
R T + + + Y ++ A G G +E + +
Sbjct: 59 RLNTTTANTATVEVLAPSARQYTATGLKP--ESVYLFRITAQTRKGWGEAAEALVV 112
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 59.5 bits (143), Expect = 8e-12
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 143
+KP F K + EG C E P P+ +W KD N + +I +
Sbjct: 7 VKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L IS V DD Y+C A N G L+V
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 13/99 (13%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
H Y+ + + + + C +V + N V+ + +
Sbjct: 6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC 65
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
I+ D +Y C +++G+ + ++VE
Sbjct: 66 SL----TISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 100
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 35.6 bits (81), Expect = 0.002
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMY 64
+ C+ G PD WF++ ++ + ++ ++ D A Y
Sbjct: 25 AARFDCKVEGYPDPEVMWFKD----DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 80
Query: 65 QCRAKNQLKTRYSSAQLRVLTL 86
C+A N L +A+L V T+
Sbjct: 81 TCKAVNSLGEATCTAELLVETM 102
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 9e-12
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 278 PPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PPG ++ ++W G PI+ Y +
Sbjct: 1 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEP----------- 49
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ Y G + + L+P TY F++ A N++G+G S
Sbjct: 50 REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 5e-05
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ + W P P +P Y + E + + S Y
Sbjct: 19 IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPREVY-----QGSEVECTVSSLLPGKTYS 72
Query: 463 VKVQAINDVGPGPESEVVTI 482
+++A N +G GP SE I
Sbjct: 73 FRLRAANKMGFGPFSEKCDI 92
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 1e-11
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 267 ISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTW 324
IST+ P G P V + V S + W I Y+I R N +
Sbjct: 1 ISTEEAA----PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSN 56
Query: 325 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
S + D +++N L ++ Y V A N G G SS
Sbjct: 57 GQYSIVEMKATGDSEV----YTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 102
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 2e-10
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
T P P + + ++W+ +E QN Y+I +R+ + ++
Sbjct: 3 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 62
Query: 441 E-YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
E V + + + +Y V VQA N G GP S +
Sbjct: 63 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINA 105
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 2e-11
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIARTNWNSTWFNVSEHVIGKE 335
P PG V+V V+ T A + W + Y+I +S+ N H+ K
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNR-RHIEKKI 72
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ + + L P+S Y V N G G S +NTP
Sbjct: 73 LTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (126), Expect = 3e-09
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
SS S + + D P AP + + W+P+P + Y+I++ K +
Sbjct: 2 SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 433 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486
++ E + +P ++ Y + V+ +N G GP S
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 57.0 bits (136), Expect = 6e-11
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P V + S ++W +G PI +K+ R + + I ++
Sbjct: 3 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 62
Query: 342 RKEASIENV---LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
S L P TY F+++A + S+ S ++
Sbjct: 63 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 7e-11
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIARTNWNSTWFNVSEHVIGKE 335
P P + + + S I W A + IT YKI R + + +
Sbjct: 11 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQL 70
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK-PYQAP 390
G L + Y F+V A G G + +D + P
Sbjct: 71 SQLIEG---------LDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVP 117
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 3e-09
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
T +D P AP + + I W+P QN YKI + +S+ +
Sbjct: 6 TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY---RKASRKSDVTE 62
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ I TEY +V A+ G GP ++ ++
Sbjct: 63 TLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSA 104
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 56.1 bits (134), Expect = 1e-10
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 85 TLKPSFKKRPLESETYAG-EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN 143
+ P F+++P + G VT+ C A P + WK +G + G +
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESK 171
++ +PV D+G Y C ATN G S+
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSR 91
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.5 bits (91), Expect = 8e-05
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC A P TY W N L + RY + L I +D YQ
Sbjct: 24 KVTLTCRARANPPATYRWKMN-----GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 66 CRAKNQLKTRYS-SAQLR 82
C A N T S A LR
Sbjct: 79 CVATNARGTVVSREASLR 96
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (132), Expect = 2e-10
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 4/104 (3%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P PG + V T + W + A IT Y++ + +V
Sbjct: 3 PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMK----KVLV 58
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+ + L Y + V A N G+G T
Sbjct: 59 DNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (79), Expect = 0.003
Identities = 13/79 (16%), Positives = 21/79 (26%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+SW ++ N ++ I + Y
Sbjct: 19 TQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 78
Query: 463 VKVQAINDVGPGPESEVVT 481
V+A N G GPE E +
Sbjct: 79 YTVKARNGAGWGPEREAII 97
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 2e-10
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
PG P + + +A +QW + Y++ + + GK+
Sbjct: 1 PGRPTMM-ISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARP---NTIDFGKDDQH 56
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384
+T L +TY F++ A N G GE + TP D
Sbjct: 57 FT-------VTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPED 93
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 3e-05
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ W P ++ + Y++ + + ++ + T Y
Sbjct: 16 ALLQWHP--PKELPGELLGYRLQYCRADEARPN----TIDFGKDDQHFTVTGLHKGTTYI 69
Query: 463 VKVQAINDVGPGPESEVVTI 482
++ A N G G E E
Sbjct: 70 FRLAAKNRAGLGEEFEKEIR 89
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 2e-10
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 10/98 (10%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P + V S T+ W I Y+I ++ + +
Sbjct: 1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM---------- 50
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ + + L P Y +V A GYG+ S
Sbjct: 51 ARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 88
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 3e-04
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+++SW + + + + ++ N+ + RI Y
Sbjct: 17 ITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTN------TARIDGLRPGMVYV 70
Query: 463 VKVQAINDVGPGPESEVVTI 482
V+V+A G G S +
Sbjct: 71 VQVRARTVAGYGKFSGKMCF 90
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 3e-10
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 11/110 (10%)
Query: 275 VEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
PG+P V ++H S I W NG + ++ ++ +
Sbjct: 7 CPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY--- 63
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
+G + + L P Y +V ++ G S TPA
Sbjct: 64 ------SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLL-VQTPA 106
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 55.0 bits (131), Expect = 3e-10
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 274 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
IV+ P P + A I W N PI HY I T++ ++ + +
Sbjct: 1 IVQDVPNAPKLTGI-TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
+ + + PW+ Y F+VIA N++G PS+ S T
Sbjct: 60 NTDSSFVVQ--------MSPWANYTFRVIAFNKIGASPPSAHSDSCTT 99
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (131), Expect = 5e-10
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 278 PPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P P V VV E + + W + IT Y I T+ N+ + +
Sbjct: 11 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGN 70
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+ I+ L + Y FK+ A N G G S Q+ TP
Sbjct: 71 RLTHQ------IQE-LTLDTPYYFKIQARNSKGMGPMSEAV-QFRTP 109
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 1e-08
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
T P P + + +I P + N Y I++ + E
Sbjct: 6 TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWV-I 64
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
E +I T Y K+QA N G GP SE V
Sbjct: 65 EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQF 106
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 8e-10
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P PG + + + + T++W G IT Y + R N W + I +
Sbjct: 2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 61
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 376
+G L + YEF+VIA N G PS PS
Sbjct: 62 FTVSG---------LTEDAAYEFRVIAKNAAGAISPPSEPS 93
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.4 bits (127), Expect = 9e-10
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNL 144
K FK P + EG + I C+ ++ P +WK G I+ R + N L
Sbjct: 1 KLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 58
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
I + + D G Y C + + + + V
Sbjct: 59 QIRGIKKTDEGTYRCEGRILARGEINFKDIQV 90
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.4 bits (96), Expect = 2e-05
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D C+ T W G + + +D + +N L IR + D Y+
Sbjct: 18 DAVIVCDVVSSLPPTIIWKHKGR----DVILKKDVRFIVLSNNYLQIRGIKKT-DEGTYR 72
Query: 66 CRAKNQLKTRYSSAQLRV 83
C + + + ++V
Sbjct: 73 CEGRILARGEINFKDIQV 90
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 1e-09
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 4/123 (3%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW-TDGATNGRPITHYKIIARTNWNST 323
G + T E ++ + + W + + +
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
+ + K V ++ + L P Y KV A G PS + T +
Sbjct: 64 ISSTGKDGKYKSVYVGEET-NITLND-LKPAMDYHAKVQAEYNSIKGTPSEAE-IFTTLS 120
Query: 384 DKP 386
+P
Sbjct: 121 CEP 123
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 1e-09
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
G PG P + +TS + WT ++ I +Y+++ + + ++
Sbjct: 8 TGVPGQPLNFKAEPESETSILLSWTPPRSD--TIANYELVYKDGEHGEEQRIT------- 58
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
++ L P S Y F++ A + G G ++
Sbjct: 59 ---IEPGTSYRLQG-LKPNSLYYFRLAARSPQGLGASTAE 94
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (80), Expect = 0.003
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ +SW P + Y++ ++ E Q T R+ + Y
Sbjct: 27 ILLSWTPPR----SDTIANYELVYKDGEHGEEQRIT-----IEPGTSYRLQGLKPNSLYY 77
Query: 463 VKVQAINDVGPGPESEVVTI 482
++ A + G G + ++
Sbjct: 78 FRLAARSPQGLGASTAEISA 97
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (126), Expect = 2e-09
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P V V + W A++ Y + + + G+
Sbjct: 11 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 70
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
L+P + Y F+V+A N+ G GE S+P
Sbjct: 71 TIQN---------LMPATVYIFRVMAQNKHGSGESSAP 99
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 1e-05
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 380 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 439
T P AP + + ++W P + N+ Y +F+ K+ + E
Sbjct: 5 ATTGPLP-SAPRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIARERVE-- 60
Query: 440 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486
+ G V I + T Y +V A N G G S + + P
Sbjct: 61 -NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 106
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 2e-09
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 279 PGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + V E + + WT+ + I Y I RT STW +
Sbjct: 5 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--TPADKPYQAPS 391
+T + L P++ Y F++ E G G S S + + T D+P + PS
Sbjct: 65 SSFTVQD-------LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 114
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 52.2 bits (124), Expect = 3e-09
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSC 159
EG + C+ + P P W + G ++ + R ++ IS V D G YS
Sbjct: 13 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 72
Query: 160 TATNVHGMDESKGRLIV 176
N G E++ L +
Sbjct: 73 VVENSEGKQEAEFTLTI 89
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 42.9 bits (100), Expect = 4e-06
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P +T+ + + C E + V ++ + EI+
Sbjct: 6 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF-----EIS 60
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVE 276
+ +D G Y VV+++ GK + T+ ++
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 37.1 bits (85), Expect = 4e-04
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++C+ G P T +W R G++L++ +Y + +++ D Y
Sbjct: 16 SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ----ASDEGNYS 71
Query: 66 CRAKNQLKTRYSSAQLRV 83
+N + + L +
Sbjct: 72 VVVENSEGKQEAEFTLTI 89
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 3e-09
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P QV T A + W +NG +T Y++ S + E+
Sbjct: 1 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKG 60
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
L P +TY +V A + +G G S TP
Sbjct: 61 ------------LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPP 92
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.001
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 6/83 (7%)
Query: 400 IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT 459
Y++ W + I T
Sbjct: 12 RSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGL------SYEIKGLSPAT 65
Query: 460 EYEVKVQAINDVGPGPESEVVTI 482
Y +VQA++ VG GP SEVV
Sbjct: 66 TYYCRVQALSVVGAGPFSEVVAC 88
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.3 bits (124), Expect = 3e-09
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Query: 278 PPGLPGGVQVV-EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PP P + + + S QW G P + R+ + + + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ L+ + V A N LG E
Sbjct: 64 RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESP 97
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 4e-09
Identities = 12/98 (12%), Positives = 23/98 (23%), Gaps = 8/98 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+ G V + W + I Y++ R +
Sbjct: 4 ADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
R + Y ++ A + G G + P
Sbjct: 64 GCRLR--------GLSPGNYSVRIRATSLAGNGSWTEP 93
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 4e-09
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P +P + + T ++QW+ + I+ S +
Sbjct: 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFK--------PKY 52
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+++N L + Y+FKVIA N G PS
Sbjct: 53 DGEDLAYTVKN-LRRSTKYKFKVIAYNSEGKSNPSEVV 89
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 1e-08
Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
G + V +V +S + W + + ST ++ +E+
Sbjct: 2 GSRPRLSQLSVTDVTTSSLRLNWEA---PPGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 58
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
R A + + L + Y + + +
Sbjct: 59 MVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQGT 97
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN---IIGSGGRRKIFENGN 143
P K +P +E E + C E + K + G+
Sbjct: 2 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESK 171
L+ D G Y C A G+ S+
Sbjct: 60 LVFLRPQASDEGHYQCFAETPAGVASSR 87
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.7 bits (86), Expect = 3e-04
Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 5/90 (5%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P ++ + L C + + N + L
Sbjct: 9 PAEVLFRENNPTVLECIIEGNDQGVK--YSWKKDGKSYNWQEHNAALRKDEGS---LVFL 63
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVE 276
+D G Y+C ++ G S++ +
Sbjct: 64 RPQASDEGHYQCFAETPAGVASSRVISFRK 93
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 1e-08
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P G+ +V S I W ++ Y++ + + ++ G
Sbjct: 5 PKGLAFTDVDVDSIKIAWES---PQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQG 61
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
L P S Y V+A ++ +P + PA
Sbjct: 62 ---------LRPGSEYTVSVVALHDDMESQPLIGTQSTAIPA 94
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 2e-08
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSGIY 157
+G V + C+ E +P W KDG ++ + + I G L + V R D+G Y
Sbjct: 10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69
Query: 158 SCTATNVHGMDESK 171
C + + S+
Sbjct: 70 WCQVEDGGETEISQ 83
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 9e-07
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P K+T++ + ++L CS E D+ ++ V+ + + + G L +
Sbjct: 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI---GFLSLK 59
Query: 247 NASFADAGEYECVVKSTVGK-ISTKTTVIVEG 277
+ +DAG Y C V+ IS + VEG
Sbjct: 60 SVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.002
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C G+ + W ++G ++ + L+++ + D Y
Sbjct: 13 PVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH-WIGFLSLKSVERS-DAGRYW 70
Query: 66 CRAKNQLKTRYS-SAQLRV 83
C+ ++ +T S L V
Sbjct: 71 CQVEDGGETEISQPVWLTV 89
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR----------RKIFENGNLLISPVS 150
A E + I + + P P W +G+++ + +G L ++ +
Sbjct: 12 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
++G Y+ A N G + + P
Sbjct: 72 HVNNGNYTLLAANPFGQASASIMAAFMDNP 101
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
N + G L + + + G Y + + G+ S P
Sbjct: 57 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.002
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF----IQDNVLTIRYLNPERDPAMYQC 66
G P + W NG +LN + + ++ L + + Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTL 80
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRP 94
A N +S + F+ P
Sbjct: 81 LAANPFGQASASIMAAF--MDNPFEFNP 106
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 2e-08
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 96 ESET-YAGEGGNVTIFC------------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG 142
+S T + G + + E +K+ G +I NG
Sbjct: 1 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 60
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+L I ++RDDSG Y+ T + +G L +
Sbjct: 61 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL 94
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 3e-08
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 103 EGGNVTIFC------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
G+ + C E PK W KD + L++ V+ G
Sbjct: 13 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN 72
Query: 157 YSCTATNVHGMDESKGRLIV 176
Y+C A+ + + ++
Sbjct: 73 YTCHASYTYLGKQYPITRVI 92
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 3e-08
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFE------ 140
PS + S A G + C+ + +P ++ W KDG ++ + +
Sbjct: 3 PSKPTVNIPSS--ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 141 ----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
G L+ P+S D+G YSC A N +G + + +
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 8e-04
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGE--LLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DP 61
TC G P Y+WF++G N ++ Y + + + D
Sbjct: 19 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 78
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C A+N T +S +R+
Sbjct: 79 GEYSCEARNGYGTPMTSNAVRM 100
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.8 bits (115), Expect = 3e-08
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 103 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
G +VT C ++ +P VW + N R + NG L I V D+G Y CT
Sbjct: 16 PGADVTFICTAKSKSPAYTLVWTRLHNGKLPS--RAMDFNGILTIRNVQPSDAGTYVCTG 73
Query: 162 TNVHGMDESKGRLIV 176
+N+ MD+ L V
Sbjct: 74 SNMFAMDQGTATLHV 88
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 3e-04
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
D+T+ C A P T W R R + +LTIR + P Y
Sbjct: 19 DVTFICTAKSKSPAYTLVWTRLHNGK--------LPSRAMDFNGILTIRNVQPSD-AGTY 69
Query: 65 QCRAKNQLKTRYSSAQLRV 83
C N +A L V
Sbjct: 70 VCTGSNMFAMDQGTATLHV 88
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 3e-04
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ ++ ++ C+A ++ + N G+L
Sbjct: 7 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH---------NGKLPSRAMDFNGILT 57
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
I N +DAG Y C + T+ V+
Sbjct: 58 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 3e-08
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 32/107 (29%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIG-----------------------------SG 133
G + + P P +W+K +
Sbjct: 23 AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82
Query: 134 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
GR ++ + + ++D G+Y+ T N G D+ + V+
Sbjct: 83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 27/105 (25%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNS----------------------ETLPLEDQDRY 43
L G P T W + N + L E + R
Sbjct: 26 KLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV 85
Query: 44 FIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84
++ + T+ E D +Y KN + + ++V+
Sbjct: 86 RVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVNLTVKVI 129
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 24/115 (20%)
Query: 185 QLPPKITIAAHRNLQLRCSA------------HTEELLDVAYIWTHNGVRIGNMDLNELE 232
++P I + A L+L + + +
Sbjct: 14 RIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 73
Query: 233 TPNINIDGG------------LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ + + + A D G Y VK+ VG+ TV V
Sbjct: 74 DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 4e-08
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 10/98 (10%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P P + S + G PI HY + R + + V
Sbjct: 1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVML 60
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ + YE V+A N+ G + +
Sbjct: 61 KSLD----------WNAEYEVYVVAENQQGKSKAAHFV 88
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 5e-08
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P G+ ++ S T+ W IT Y+I S +E
Sbjct: 4 PTGIDFSDITANSFTVHWIA---PRATITGYRIRHHPEHFSGRP--------REDRVPHS 52
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
R ++ N L P + Y ++A N
Sbjct: 53 RNSITLTN-LTPGTEYVVSIVALNGREESPLLI 84
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 6e-08
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P PG + V + + W++ + ++ A W+ ++
Sbjct: 2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+ L +Y +V A + S SP
Sbjct: 62 S---LRIAAST-LKSGISYRARVRAWAQAYNTTWSEWSP 96
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.8 bits (115), Expect = 6e-08
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKI-------- 138
PS + S G + C+ + +P ++ W KDG + + +K
Sbjct: 3 PSKPTISVPSSVT--IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60
Query: 139 ---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++G+L+ PV+ DSG Y C A N +G +
Sbjct: 61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.001
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 13/102 (12%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-----LNELETP 234
PP ++ L CS + Y W +G+ + D +
Sbjct: 2 PPSKPTISVPSSVTIGNRAVLTCSE-HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
I+ G L + D+GEY C ++ G ++
Sbjct: 61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLP-----LEDQDRYFIQDNVLTIRYLNPER 59
TC G P YSWF++G + + + + L +
Sbjct: 19 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF- 77
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRV 83
D Y C+A+N T S +
Sbjct: 78 DSGEYYCQAQNGYGTAMRSEAAHM 101
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 8e-08
Identities = 21/105 (20%), Positives = 28/105 (26%), Gaps = 17/105 (16%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGN------------IIG 131
F RP + GG++T A P W K +
Sbjct: 4 IGLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61
Query: 132 SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
S R L I+ +G Y C + D S L V
Sbjct: 62 SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 4e-05
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI-------GNMDLNELETPNINID 239
P + ++ LL + G + ++ L++ +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
L IT+A A G Y C V + + + V
Sbjct: 71 LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 48.0 bits (113), Expect = 8e-08
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 339
G P G+ ++ + SAT+ WT + Y++ T V+
Sbjct: 2 GSPKGISFSDITENSATVSWTP---PRSRVDSYRVSYVPITGGTPNVVTVD--------- 49
Query: 340 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ + LVP Y +I+ EP S
Sbjct: 50 GSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPIS 83
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 9e-08
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-------IIGSGGRRKIFE 140
P K S + EG + C E+ P + GS R +
Sbjct: 3 PRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 141 NGN---LLISPVS-RDDSGIYSCTATNVHGMDESKGRLIV 176
+ L I ++ D G Y C T+ G D++ L V
Sbjct: 61 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 3e-05
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
C++ VP VT + + L + R+F+ + L I LN E DP
Sbjct: 19 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 78
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y+C + + + LRV
Sbjct: 79 GQYRCNGTSSKGSDQAIITLRV 100
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 3e-04
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 3/100 (3%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
GP + + I L C + + + + + ++
Sbjct: 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 239 DGGL--LEITNASFAD-AGEYECVVKSTVGKISTKTTVIV 275
G L I N + G+Y C S+ G T+ V
Sbjct: 61 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.5 bits (114), Expect = 1e-07
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 7/117 (5%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG P V++ + + W + I Y N S+ V +
Sbjct: 5 SSGPGAPSTVRI-SKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRI 63
Query: 336 VD------RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
T + A+ F++ A NE GYG + P
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSGP 120
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 1e-07
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-------------ENGNL 144
+ Y GNVT P P + +WKK + + + +G+L
Sbjct: 4 QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
I ++ D Y + N+ K L VL
Sbjct: 63 TIYNLTSSDEDEYEMESPNITD--TMKFFLYVL 93
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN----INIDGGLLE 244
+I + N+ ++ + + N + + ++ G L
Sbjct: 4 QIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLT 63
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVI 274
I N + +D EYE + + V+
Sbjct: 64 IYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 1e-07
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 10/96 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI---IGSGGRRKIFENGN- 143
P F + +++ G T C+ G +
Sbjct: 3 PHFLR--IQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 59
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESK-GRLIV 176
+ ++ D+G Y C G+ S L+V
Sbjct: 60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
T+ C A G + G + L + D Y+
Sbjct: 18 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR-DAGKYR 76
Query: 66 CRAKNQLKTRYSS-AQLRV 83
C + + S+ A+L V
Sbjct: 77 CMIRTEGGVGISNYAELVV 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (78), Expect = 0.004
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTT 272
G+ + + L E++ + + N + DAG+Y C++++ G S
Sbjct: 33 DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 92
Query: 273 VIV 275
++V
Sbjct: 93 LVV 95
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 12/106 (11%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P + + T + + + IT Y+I ++ E V +
Sbjct: 1 PLSPPTNLHLEANPDTG-VLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ-- 57
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
+ +N L P Y V + P S + PA
Sbjct: 58 -----SSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTI---IPA 94
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 2e-07
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK-KDGNIIGSGGRRKIFENGNLL 145
P+ + + G +VT+ C V GS R LL
Sbjct: 6 CPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 146 ISPVSRDDSGIYSCTATN 163
+ V DSG YSC
Sbjct: 64 LRSVQLHDSGNYSCYRAG 81
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 2e-07
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 10/95 (10%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V TS ++W + + YK++ T + V + T
Sbjct: 4 PKNLRVGSRTATSLDLEWDN---SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT- 59
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ + LVP + Y + A P++ +
Sbjct: 60 -----LTD-LVPGTEYGVGISAVMNSKQSIPATMN 88
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 47.2 bits (111), Expect = 2e-07
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FEN 141
K + + + A G I+C + P + K+G + +I
Sbjct: 1 KGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG 60
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVL 177
LL +D G+Y+C N G + +L V+
Sbjct: 61 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.7 bits (81), Expect = 0.002
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
C P ++F+NG+ +N L + PE +Y
Sbjct: 20 VTMIYCMYGSNPMGYPNYFKNGKDVNGNP-EDRITRHNRTSGKRLLFKTTLPED-EGVYT 77
Query: 66 CRAKNQLKTRYS-SAQLRVL 84
C N + S +L V+
Sbjct: 78 CEVDNGVGKPQKHSLKLTVV 97
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 47.3 bits (111), Expect = 2e-07
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 10/110 (9%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDG--ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P P V + I WT + P HY + + + + + + ++
Sbjct: 4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 63
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
I + + Y KV+A N+ G ++ + D+
Sbjct: 64 -------NNIVIAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 105
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Score = 44.6 bits (104), Expect = 2e-06
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
D P++ P + G G + +L ISW P+P + NAPN +Y + W++
Sbjct: 2 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENN--NIF 59
Query: 444 NVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
+ + I + + +Y +KV AIND G + + +
Sbjct: 60 DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGY 100
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (110), Expect = 2e-07
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 143
LKP + G + + AP P W + + +
Sbjct: 1 LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ R DSG Y N G DE+ +IV
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 3e-07
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++ + S + W IT Y I + + V R
Sbjct: 4 PSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSPPR---------EVVPRPRP 51
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ L P + Y VIA EP
Sbjct: 52 GVTEATITGLEPGTEYTIYVIALKNNQKSEPLI 84
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-07
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+P P G + + CN WK +G++I + +
Sbjct: 1 RPVIV-SPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59
Query: 144 ------------LLISPVSRDDSGI-YSCTATNVHGMDESKGRLIV 176
L IS + ++C A N HG+D + +LI
Sbjct: 60 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.001
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 9/87 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD---------NVLTIRYLN 56
+ C G W NG +++ + L + VL I +
Sbjct: 19 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 78
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRV 83
+ C AKN + QL
Sbjct: 79 SRFYKHPFTCFAKNTHGIDAAYIQLIY 105
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.9 bits (110), Expect = 3e-07
Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 8/101 (7%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
L G VV + W + ++ + + + H+
Sbjct: 6 MLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS-- 63
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+ + + L Y ++ G S SP
Sbjct: 64 -----KDQFEL-CGLHQAPVYTLQMRCIRSSLPGFWSPWSP 98
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 3e-07
Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 6/119 (5%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S+ P P V +V S + W R + + +
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S VI + L P + Y+F++ + G E S T P
Sbjct: 65 SYGVIYTGYATRHVVEG------LEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.2 bits (108), Expect = 4e-07
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P V++T+ ++W + I + K+
Sbjct: 1 PVAGPYITFTDAVNETTIMLKWMYI----PASNNNTPIHGFYIYYRPTDSDNDSDYKKDM 56
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
R SI + L P ++Y+ K+ NE G E S+
Sbjct: 57 VEGDRYWHSISH-LQPETSYDIKMQCFNEGGESEFSNV 93
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (90), Expect = 1e-04
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ + W +P N P I+ + + D++ S+ K+ I T Y+
Sbjct: 18 IMLKWMYIPASNNNTP-IHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYD 76
Query: 463 VKVQAINDVGPGPESEVVTI 482
+K+Q N+ G S V+
Sbjct: 77 IKMQCFNEGGESEFSNVMIC 96
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 5e-07
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDS 154
+ I + PKP W +G I+ + L + + ++
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPS 181
G Y+ A N +G DE + + P
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 8e-05
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 185 QLPPKITI----AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
P IT + + + + + + + + ++ N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
G L++ N + + G+Y + K+ GK + + G PG
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 45.9 bits (107), Expect = 5e-07
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P +P +++ E +T+ + W+ + + +S + G
Sbjct: 6 PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR 65
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ L + YEFK+ + + E S+
Sbjct: 66 SFK-------IAPLETATMYEFKLQSFSAASASEFSA 95
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 6e-07
Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 14/99 (14%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P ++ +V TS + QWT N++ V
Sbjct: 1 PA--PTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVS 58
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
L+ + YE V A + P+
Sbjct: 59 G------------LMVATKYEVSVYALKDTLTSRPAQGV 85
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 7e-07
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 3/112 (2%)
Query: 378 QYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS 436
+++T P P + G + +SW P N + + Q
Sbjct: 2 EFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYG--VYAKGQR 59
Query: 437 ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPLV 488
+ V + V V+ ++ G +S V + + LV
Sbjct: 60 VAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLV 111
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 7e-07
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V +V T+A I W I ++ + +
Sbjct: 5 PSQIEVKDVTDTTALITWFK---PLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGN 61
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
K P + YE +I+ P+ +
Sbjct: 62 LK---------PDTEYEVSLISRRGDMSSNPAKET 87
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 8e-07
Identities = 21/91 (23%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P +R E T C P P+ KDG F
Sbjct: 2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT----------FPLPIGES 51
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
V+RD G Y C A + G + + VL
Sbjct: 52 VTVTRDLEGTYLCRARSTQGEVTREVTVNVL 82
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.2 bits (77), Expect = 0.004
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 17/79 (21%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
T C+A+G P + + Y
Sbjct: 21 QQTPMCQAWGNPLPELKCL-----------------KDGTFPLPIGESVTVTRDLEGTYL 63
Query: 66 CRAKNQLKTRYSSAQLRVL 84
CRA++ + VL
Sbjct: 64 CRARSTQGEVTREVTVNVL 82
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 8e-07
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-----FENGNLLIS 147
+ LE T A G V + C + W K+G I G + + + L+I
Sbjct: 5 KQLEDTT-AYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ D+ YS T +S +L V
Sbjct: 63 GATKADAAEYSVMTTG----GQSSAKLSV 87
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 1e-06
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 12/92 (13%)
Query: 285 VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 344
++VV TS I W + +Y+I ++ K +G
Sbjct: 3 LEVVAATPTSLLISWDA---PAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISG--- 56
Query: 345 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
L P Y V A G SS
Sbjct: 57 ------LKPGVDYTITVYAVTGRGDSPASSKP 82
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.1 bits (103), Expect = 1e-06
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P + V +TS ++ WT + PI HY+I + + E + ++ YT
Sbjct: 4 PRDLMVTASSETSISLIWTKASG---PIDHYRITFTPSSGISS----EVTVPRDRTSYT- 55
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
L P + Y + A S+
Sbjct: 56 ------LTDLEPGAEYIISITAERGRQQSLESTVD 84
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.7 bits (104), Expect = 1e-06
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGR 135
K S S+ E ++ + C P+ WK + I
Sbjct: 1 KGSVYTAQ--SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 136 RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR--LIVL 177
R F + + S V+R D+G Y+C + G + + L VL
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.8 bits (81), Expect = 0.002
Identities = 11/93 (11%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIW---THNGVRIGNMDLNELETPNINIDGGLL 243
+ + + +++L C+ V + + + + N + + +
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
++ + D GEY C+V G+ + ++ +
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 44.1 bits (103), Expect = 1e-06
Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V + +T+ +++W Y++ + E I + +
Sbjct: 3 PKDLEVSDPTETTLSLRWRRPVA---KFDRYRLTYVSPSGKKN----EMEIPVDSTSFI- 54
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
L + Y ++A +P++
Sbjct: 55 ------LRGLDAGTEYTISLVAEKGRHKSKPTTIK 83
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 2e-06
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 13/95 (13%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P +V + +T+ TI W IT +++ A T + +
Sbjct: 5 PRRARVTDATETTITISWRT---KTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGL 61
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
P + Y+ + N+ P
Sbjct: 62 ----------QPGTDYKIYLYTLNDNARSSPVVID 86
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.1 bits (103), Expect = 2e-06
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 13/105 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+++V+ + W + N + W +
Sbjct: 2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLE------- 54
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+ L P +TY +V LG G S +P
Sbjct: 55 -----PRVLLTK-LQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 93
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.2 bits (85), Expect = 6e-04
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
L ++W R + N+ Y++ +++ Q + T Y
Sbjct: 19 LELTWAG-SRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ--------PDTTYI 69
Query: 463 VKVQAINDVGPGPESEVVTI 482
V+V+ + +GPGP S
Sbjct: 70 VRVRTLTPLGPGPFSPDHEF 89
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 43.8 bits (102), Expect = 2e-06
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 103 EGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
EG + + C+ P K + ++G F I + SG Y CT
Sbjct: 14 EGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNF-----SIPQANHSHSGDYHCTG 68
Query: 162 TNVHGMDESKGRLIVLHGPS 181
+ + SK I + P+
Sbjct: 69 NIGYTLYSSKPVTITVQAPA 88
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Score = 43.6 bits (102), Expect = 3e-06
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P + +S T+ WT N +T Y + T +T + + G
Sbjct: 3 APTAPTNLASTAQTTSSITLSWTASTDNV-GVTGYDVYNGTALATTVTGTTATISG---- 57
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
L ++Y F V A + G S+ S
Sbjct: 58 -------------LAADTSYTFTVKAKDA--AGNVSAASN 82
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-06
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 21/116 (18%)
Query: 90 FKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNII------------GSGG 134
F ++P G ++T +A KP W K + +
Sbjct: 3 FIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 60
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI 190
R + I + +G Y C T D L V P I
Sbjct: 61 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST----GTTPNI 112
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 7e-06
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 7/103 (6%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELL---DVAYIWTHNGV----RIGNMDLNELETPNINID 239
P T+ ++ E+LL + + ++ L E + +
Sbjct: 7 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 66
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
++I A AG Y C V S + V G
Sbjct: 67 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 5/85 (5%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV----LTIRYLNPERDPAMY 64
+ P + + + +L + L+ ++ + V + I Y
Sbjct: 25 KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN-FAGNY 83
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPS 89
+C + K S L V +
Sbjct: 84 RCEVTYKDKFDSCSFDLEVHESTGT 108
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 4e-06
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVW-----------KKDGNIIGSGGRRKIFENGNL 144
E E E V + C P+ W + I S R F +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
V+R+D+G Y+C + G + ++ ++
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 5e-06
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 158
I P P W +G + + G LL + + ++G Y+
Sbjct: 19 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 78
Query: 159 CTATNVHGMDESKGRLIVLHGP 180
A N G L P
Sbjct: 79 LIAKNPLGTANQTINGHFLKEP 100
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.001
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 5/100 (5%)
Query: 185 QLPPKIT----IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
PP++ + + ++ +R + + I
Sbjct: 3 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKII-HVEYYQEGEISE 61
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
G L + + G Y + K+ +G + P
Sbjct: 62 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 101
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 5e-06
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P V + E + A I+ Y + R + + + G
Sbjct: 3 PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRW---------KEATIPG 53
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ L P YE ++I+ + G+ E +
Sbjct: 54 HLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTR 86
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 5e-06
Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 4/92 (4%)
Query: 90 FKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGR---RKIFENGNLL 145
K+R + + C K W KD + R L
Sbjct: 3 CKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW 62
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
P +DSG Y C N K +
Sbjct: 63 FVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV 94
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 6e-06
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 13/99 (13%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
PP P ++ + + + W +T++ + N
Sbjct: 2 PP--PTDLRFTNIGPDTMRVTWA--PPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAV 57
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
T P + Y V + E P
Sbjct: 58 VLTNLL---------PGTEYVVSVSSVYEQHESTPLRGR 87
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 7e-06
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P +QVV V I W + H + ART + + + K
Sbjct: 6 PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLK-----QK 60
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
++ +E L P + YEF+V G SP
Sbjct: 61 QEWICLET-LTPDTQYEFQVRVKPLQGEFTTWSP 93
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 8e-06
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 372 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND 431
SS + T P P + ++WE + + + YK+F+R +
Sbjct: 4 GSSGTVNVTTKKTPP-SQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQ 62
Query: 432 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
Q + +Y ++V+A D G G SE + I
Sbjct: 63 NNVQVLNTNKT-------SAELVLPIKEDYIIEVKATTDGGDGTSSEQIRI 106
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 3e-04
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
+ PP P G V T + W N +T YK+ RT+ + ++ +
Sbjct: 15 KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKT- 73
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S E VL Y +V A + G G S + P
Sbjct: 74 ------------SAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 2e-05
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++ EV +A + W ++++ E ++ + +
Sbjct: 5 PRDLEAKEVTPRTALLTW-------TEPPVRPAGYLLSFHTPGGQTQEILLPGGITSHQ- 56
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ L P ++Y ++ A P S S
Sbjct: 57 -----LLG-LFPSTSYNARLQAMWGQSLLPPVSTS 85
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.6 bits (96), Expect = 2e-05
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
+ T E +VT+ C ++ + N L I P+ R+D+G
Sbjct: 11 TNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 70
Query: 157 YSCTATNVHGMDESKG-RLIVLHGPS 181
Y C +N + S +L ++ PS
Sbjct: 71 YQCEISNPVSVRRSNSIKLDIIFDPS 96
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 2e-05
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGNLLI 146
P F P + + C P+P + W + IG N
Sbjct: 2 PFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN----- 54
Query: 147 SPVSRDDSGIYSCTATNVHGMDESK 171
S ++SC A N+ G+ S+
Sbjct: 55 -VTGVTQSTMFSCEAHNLKGLASSR 78
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-05
Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P GVQ + + I W D + T + +
Sbjct: 1 PMMPPVGVQASILSHDTIRITWAD------NSLPKHQKITDSRYYTVRWKTNIPANTKYK 54
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + L P + YEF V+ S
Sbjct: 55 NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 2e-05
Identities = 15/96 (15%), Positives = 21/96 (21%), Gaps = 13/96 (13%)
Query: 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRY 339
G P W + I + +
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAH-------------LL 49
Query: 340 TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + L P+ YE KV A G G SS
Sbjct: 50 DSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSL 85
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 2e-05
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+F+K+ LE +G + + A + W K+G I G + IFE+
Sbjct: 5 STAFQKK-LEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L IS S D Y C ++ L V
Sbjct: 63 TLTISQCSLADDAAYQCVVGG----EKCSTELFV 92
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (79), Expect = 0.003
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
++ ++L P ++ ++L + +V ++ +++
Sbjct: 6 TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT- 63
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
L I+ S AD Y+CV VG T + V+
Sbjct: 64 ---LTISQCSLADDAAYQCV----VGGEKCSTELFVK 93
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 13/99 (13%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P + V++ +S ++WT N I Y+I + E + V
Sbjct: 7 PQ--LTDLSFVDITDSSIGLRWTP--LNSSTIIGYRITVVAAGE--GIPIFEDFVDSSVG 60
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
YT L P Y+ VI G P++ +
Sbjct: 61 YYT-------VTGLEPGIDYDISVITLINGGESAPTTLT 92
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 4e-05
Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 12/102 (11%)
Query: 279 PGLPGGVQVVEVHKTSATI--QWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P P + V V + + W D N + S F +
Sbjct: 2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQH 61
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+ ++ A E G GE S SP
Sbjct: 62 HCVIHD---------AWSGLRHVVQLRAQEEFGQGEWSEWSP 94
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 8/99 (8%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
+ + + W ++ + + + + + +
Sbjct: 7 RTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQY 66
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
L+P + Y ++ G S SP
Sbjct: 67 EL--------CGLLPATAYTLQIRCIRWPLPGHWSDWSP 97
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-05
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P L V+ E K I+W+ + ++ E +
Sbjct: 6 PLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQT 65
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
+ L P Y +V + GY SP+ P+
Sbjct: 66 EFKILS-------LHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPS 104
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 6e-05
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLL 145
P+ K + G +V + C E + W + + G L
Sbjct: 3 PTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ S + +C A N G E ++ V
Sbjct: 61 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 8e-05
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 15/100 (15%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWK----------KDGNIIGSGGRRKIFENGNLLI 146
+A G I C + P P + G + L I
Sbjct: 14 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI 73
Query: 147 SPVSRD-DSGIYSCTATNVHGMDESKGRLIV----LHGPS 181
S + R IY+CTA N G D RL + GPS
Sbjct: 74 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (79), Expect = 0.004
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 4/82 (4%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD----NVLTIRYLNPERDP 61
C P + E + + + LTI +
Sbjct: 23 KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 82
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
+Y C A N + +L+
Sbjct: 83 TIYNCTAWNSFGSDTEIIRLKE 104
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.2 bits (90), Expect = 9e-05
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 12/93 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P + V +V T A ++WT + +
Sbjct: 7 PTQILVRDVSDTVAFVEWTP---PRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQA 63
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ P S YE + A + SS
Sbjct: 64 LR---------PGSRYEVSISAVRGTNESDASS 87
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.2 bits (90), Expect = 1e-04
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 15/109 (13%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGAT----NGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P L V+ ++ KT ++W+ G Y+I + W
Sbjct: 6 PRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEI------- 58
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+TG + L P Y + + GY S P
Sbjct: 59 ----HFTGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEMP 103
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 1e-04
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + VE + ++A +Q+ + AT G PI YK R W +
Sbjct: 2 TPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA----- 55
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+ + L P +TY ++ A N G GE S+ S P
Sbjct: 56 -KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 100
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 38.9 bits (89), Expect = 1e-04
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGN---IIGSGGRRKIFENGN 143
F + EG V C+P + W + I G R GN
Sbjct: 4 QEFSAEERDPVK-ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDES 170
L I+ D G YSC AT+
Sbjct: 63 LYIAKTEASDLGNYSCFATSHIDFITK 89
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 2e-04
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
GG + C+ ++ F ++G + + + NLLI +S DSG+Y C +
Sbjct: 11 HGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE 70
Query: 163 NVHGMDESKGRLIVL 177
+
Sbjct: 71 ERVKNKTVFQVVAKH 85
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 90 FKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIF--------E 140
+ KR SE G + C + +P W K +
Sbjct: 6 YIKRQ--SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNIS 63
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
L PV +D+G Y C+A + ES
Sbjct: 64 FFILHFEPVLPNDNGSYRCSANFQSNLIESH 94
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 10/82 (12%), Positives = 19/82 (23%), Gaps = 5/82 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGSGGRRKIFENGNL 144
+ PL S G+ +T+ C E + V + +
Sbjct: 5 ERVELAPLPSWQPVGK--QLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTT 62
Query: 145 LISPVSRDDSGIYSCTATNVHG 166
+ +SC
Sbjct: 63 TVLVRRDHHGAQFSCRTELDLR 84
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 2e-04
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 16/108 (14%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
P P ++ + + + A + W + I T + +
Sbjct: 1 PDGPTQLRALNLTEGFAVLHWK----PPQNPVDTYDIQVTAPGAPPLQAETPGSAVDYPL 56
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ V + Y V P+S + T + P
Sbjct: 57 HDL----------VLHTNYTATVRGLRGPNLTSPASITFT--TGLEAP 92
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 139 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I V D G Y+C + +E+ L V
Sbjct: 78 EGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I N F+D G Y C + + + VE P
Sbjct: 83 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 3e-04
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
EG + + C+ V + +EN N+ I+ + +DSG Y CT
Sbjct: 14 EGQPLFLRCHGWRNWDVYKVIYYKDGEA----LKYWYENHNISITNATVEDSGTYYCTGK 69
Query: 163 NVHGMDESKG-RLIVLHGP 180
ES+ + V+ P
Sbjct: 70 VWQLDYESEPLNITVIKAP 88
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 3e-04
Identities = 9/101 (8%), Positives = 18/101 (17%), Gaps = 13/101 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRP-ITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P V + + + + W P T +
Sbjct: 2 PT--PTNVTIESYNM-NPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCN 58
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
P ++ +V A +
Sbjct: 59 ISDHV---------GDPSNSLWVRVKARVGQKESAYAKSEE 90
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 3e-04
Identities = 15/107 (14%), Positives = 23/107 (21%), Gaps = 12/107 (11%)
Query: 279 PGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P V V + + W +T P + +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS-PQYNTP 382
Y +V A + G S S + TP
Sbjct: 68 AH--------TITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHATP 105
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (87), Expect = 3e-04
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 19/91 (20%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 139
E NV + + F W K GR I+
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
NG+LL ++ D G+Y+ T+ +
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQ 99
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 4e-04
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNL 144
+KP + P E G + + C A W+ +G+ + L
Sbjct: 1 VKPLQVEPP-EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA--VQSDTGRSVL 57
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ S +G C + + +L+V
Sbjct: 58 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 6e-04
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 270 KTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSE 329
++ + P +P + V TS + WT + Y I +
Sbjct: 12 ESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVD 70
Query: 330 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ ++ +IEN L P S Y + A N +G G P S
Sbjct: 71 Y----------KQRYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYES 106
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 6e-04
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 6/104 (5%)
Query: 286 QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 345
V + T+ + WT I Y R + T + + + A
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQ-FIQGY----RVMYRQTSGLQATSSWQNLDAKVPTERSA 77
Query: 346 SIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 389
+ N L TYE KV G S T P
Sbjct: 78 VLVN-LKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
|
| >d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (83), Expect = 0.001
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167
++K+ K+F+NG L I + DD IY + + G
Sbjct: 44 FRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGK 88
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.002
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 92 KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISP 148
++PL G + P WK G + + +I E+G L++
Sbjct: 5 EKPLYGVE-VFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHN 62
Query: 149 VSRDDSGIYSCTATNVHGMDESKGRLIV 176
+G S A N S L V
Sbjct: 63 CQLGMTGEVSFQAANAK----SAANLKV 86
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (79), Expect = 0.002
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
S+T+ +G ++T+ P + GG+ DSG
Sbjct: 6 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLE-------LQDSG 58
Query: 156 IYSCTATNVHGMDESKGRLIVLHGP 180
++CT E K ++VL
Sbjct: 59 TWTCTVLQNQKKVEFKIDIVVLAFQ 83
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.7 bits (81), Expect = 0.002
Identities = 12/84 (14%), Positives = 18/84 (21%), Gaps = 9/84 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGSGGRRKIFENGN- 143
P L+ A G + TI C + + K
Sbjct: 2 PRQVILTLQPTLVA-VGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60
Query: 144 ----LLISPVSRDDSGIYSCTATN 163
+ D +SC A
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVL 84
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (80), Expect = 0.003
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 6 DLTWTCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
T C V +T FR E L+ ET + E
Sbjct: 19 SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATA--TFNSTADREDGHR 76
Query: 63 MYQCRAKNQLKTRYSSAQLRV 83
+ C A L +R + +
Sbjct: 77 NFSCLAVLDLMSRGGNIFHKH 97
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ ++ + D G Y C G+ K L+VL
Sbjct: 90 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 99.73 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.71 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 99.71 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.7 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 99.7 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 99.69 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 99.68 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 99.67 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 99.67 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.66 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.66 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 99.65 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.65 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.65 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 99.64 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 99.64 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 99.64 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.64 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 99.63 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.63 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.63 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.63 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.61 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 99.61 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.61 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d2dtge2 | 196 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.59 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 99.58 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.58 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.57 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 99.57 | |
| d1uena_ | 125 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.57 | |
| d1x5ya1 | 98 | Myosin binding protein C, fast-type {Mouse (Mus mu | 99.55 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 99.54 | |
| d2cspa1 | 117 | Rim binding protein 2 {Human (Homo sapiens) [TaxId | 99.54 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.54 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.53 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.53 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 99.53 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.53 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.51 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.51 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.51 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.5 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.5 | |
| d1x4za1 | 108 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.5 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.5 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.5 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 99.5 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.49 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.49 | |
| d1cfba1 | 100 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.49 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.49 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 99.49 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.49 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.48 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.48 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.48 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 99.48 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.47 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.47 | |
| d1uema_ | 117 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.47 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.47 | |
| d1tdqa2 | 92 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.47 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.46 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.46 | |
| d2b5ib2 | 104 | Interleukin-2 receptor beta chain {Human (Homo sap | 99.46 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.45 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.45 | |
| d1qr4a2 | 88 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.45 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.45 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.45 | |
| d1x5ga1 | 103 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.44 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.44 | |
| d1ueya_ | 127 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.44 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.43 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.43 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.42 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.42 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.42 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 99.41 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.41 | |
| d1wf5a1 | 108 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.41 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.41 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 99.41 | |
| d1fnfa1 | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.41 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.41 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.41 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.41 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.4 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.4 | |
| d1x4xa1 | 93 | Fibronectin type-III domain containing protein 3a, | 99.4 | |
| d2dtge3 | 125 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 99.39 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 99.39 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.39 | |
| d1fnha2 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.39 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.39 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.39 | |
| d1cd9b1 | 107 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.39 | |
| d1ujta_ | 120 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 99.39 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.39 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 99.38 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.38 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 99.37 | |
| d2gysa2 | 114 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 99.37 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.37 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.36 | |
| d1wisa1 | 111 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.36 | |
| d1j8ka_ | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.36 | |
| d2ic2a1 | 107 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.36 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.36 | |
| d2crza1 | 97 | Fibronectin type-III domain containing protein 3a, | 99.36 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.35 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.35 | |
| d2vkwa2 | 93 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.35 | |
| d1tdqa1 | 93 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.35 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.35 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 99.34 | |
| d1fnha1 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.34 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.34 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.33 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.33 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.33 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.33 | |
| d1fnaa_ | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.32 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.32 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.32 | |
| d2haza1 | 101 | Neural cell adhesion molecule 1, NCAM {Human (Homo | 99.32 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.31 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.31 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.31 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.31 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.31 | |
| d1fnha3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.3 | |
| d1x3da1 | 105 | Fibronectin type-III domain containing protein 3a, | 99.3 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.3 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.3 | |
| d1bpva_ | 104 | Type I titin module {Human (Homo sapiens) [TaxId: | 99.3 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.3 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.3 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.3 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.3 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.3 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.3 | |
| d1x5aa1 | 94 | Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta | 99.29 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.29 | |
| d1x5la1 | 98 | Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta | 99.29 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.29 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.29 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.28 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.28 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.28 | |
| d1x5xa1 | 96 | Fibronectin type-III domain containing protein 3a, | 99.28 | |
| d2djsa1 | 95 | Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta | 99.27 | |
| d1x5fa1 | 107 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1qg3a2 | 103 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.27 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.27 | |
| d1cd9b2 | 106 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.27 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.27 | |
| d1wfoa1 | 117 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.26 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.26 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.26 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.26 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.25 | |
| d1uc6a_ | 109 | Ciliary neurotrophic factor receptor alpha {Human | 99.25 | |
| d1n26a3 | 104 | Interleukin-6 receptor alpha chain, domains 2 and | 99.25 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.25 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.24 | |
| d2cuia1 | 101 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1erna2 | 105 | Erythropoietin (EPO) receptor {Human (Homo sapiens | 99.24 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.24 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.24 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.23 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 99.23 | |
| d2dn7a1 | 94 | Receptor-type tyrosine-protein phosphatase F, PTPR | 99.23 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.23 | |
| d2d9qb2 | 105 | Granulocyte colony-stimulating factor (GC-SF) rece | 99.23 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.23 | |
| d2crma1 | 107 | Fibronectin type-III domain containing protein 3a, | 99.22 | |
| d1cfba2 | 105 | Neuroglian, two amino proximal Fn3 repeats {Drosop | 99.22 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.22 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.2 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.2 | |
| d1v5ja_ | 108 | KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | 99.2 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.19 | |
| d1x5za1 | 102 | Receptor-type tyrosine-protein phosphatase delta, | 99.19 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.19 | |
| d1bqua2 | 115 | Cytokine receptor gp130 cytokine-binding domains { | 99.18 | |
| d2ibga1 | 95 | Hedgehog receptor iHog {Fruit fly (Drosophila mela | 99.18 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.18 | |
| d1wfta_ | 123 | Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T | 99.17 | |
| d1wfna1 | 106 | Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d3d85d3 | 94 | The p40 domain of interleukin-12 (IL-12 beta chain | 99.17 | |
| d1x5ha1 | 119 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.17 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.16 | |
| d1iarb2 | 101 | Interleukin-4 receptor alpha chain {Human (Homo sa | 99.16 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.16 | |
| d1x5ka1 | 111 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.15 | |
| d1va9a1 | 109 | Down syndrome cell adhesion molecule-like protein | 99.15 | |
| d2gysa4 | 100 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 99.15 | |
| d1wfua_ | 120 | Fibronectin type 3 and ankyrin repeat domains 1 pr | 99.15 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.14 | |
| d1qg3a1 | 92 | Integrin beta-4 subunit {Human (Homo sapiens) [Tax | 99.14 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.14 | |
| d1wj3a_ | 117 | Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI | 99.13 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.13 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.13 | |
| d1uena_ | 125 | KIAA0343 protein {Human (Homo sapiens) [TaxId: 960 | 99.12 | |
| d1bqua1 | 95 | Cytokine receptor gp130 cytokine-binding domains { | 99.12 | |
| d1x5ia1 | 113 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.11 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.1 | |
| d1fyhb1 | 98 | Interferon-gamma receptor alpha chain {Human (Homo | 99.1 | |
| d1x5ja1 | 100 | Neogenin {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.08 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.08 | |
| d2b5ic1 | 95 | Cytokine receptor common gamma chain {Human (Homo | 99.08 | |
| d1f6fb2 | 103 | Prolactin receptor {Rat (Rattus norvegicus) [TaxId | 99.08 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.07 | |
| d1y6kr1 | 99 | Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa | 99.06 | |
| d2fnba_ | 95 | Fibronectin, different Fn3 modules {Human (Homo sa | 99.05 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.05 | |
| d1x4ya1 | 101 | Brother of CDO precursor (BOC) {Mouse (Mus musculu | 99.04 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.04 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.03 | |
| d3d48r2 | 104 | Prolactin receptor {Human (Homo sapiens) [TaxId: 9 | 99.02 | |
| d2cuha1 | 102 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.99 | |
| d1axib2 | 106 | Growth hormone receptor {Human (Homo sapiens) [Tax | 98.99 | |
| d1k85a_ | 88 | Fibronectin type III domain from chitinase A1. {Ba | 98.98 | |
| d2dtge1 | 102 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.97 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.97 | |
| d1fnfa3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.96 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.96 | |
| d1fnha3 | 89 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.94 | |
| d1tdqa2 | 92 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.93 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.93 | |
| d1qr4a2 | 88 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 98.93 | |
| d1wk0a_ | 137 | Fibronectin type-III domain containing protein 3a, | 98.92 | |
| d1fnfa1 | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.92 | |
| d1fnha2 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.92 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 98.92 | |
| d1ujta_ | 120 | KIAA1568 protein {Human (Homo sapiens) [TaxId: 960 | 98.91 | |
| d1fnfa2 | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.91 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.91 | |
| d2cspa1 | 117 | Rim binding protein 2 {Human (Homo sapiens) [TaxId | 98.91 | |
| d1cd9b1 | 107 | Granulocyte colony-stimulating factor (GC-SF) rece | 98.9 | |
| d1tena_ | 90 | Tenascin {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.9 | |
| d1fnha1 | 90 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.89 | |
| d1erna2 | 105 | Erythropoietin (EPO) receptor {Human (Homo sapiens | 98.85 | |
| d3d85d3 | 94 | The p40 domain of interleukin-12 (IL-12 beta chain | 98.85 | |
| d1tdqa3 | 86 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.85 | |
| d2cuia1 | 101 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d1j8ka_ | 94 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.84 | |
| d2b5ib2 | 104 | Interleukin-2 receptor beta chain {Human (Homo sap | 98.84 | |
| d1fnaa_ | 91 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.83 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.82 | |
| d1tdqa1 | 93 | Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | 98.82 | |
| d1qr4a1 | 87 | Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | 98.8 | |
| d2cuma1 | 93 | Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 98.79 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.79 | |
| d2gysa2 | 114 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.79 | |
| d1uc6a_ | 109 | Ciliary neurotrophic factor receptor alpha {Human | 98.78 | |
| d1owwa_ | 93 | Fibronectin, different Fn3 modules {Human (Homo sa | 98.77 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.74 | |
| d2dtge3 | 125 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.74 | |
| d1fyhb1 | 98 | Interferon-gamma receptor alpha chain {Human (Homo | 98.72 | |
| d2gysa4 | 100 | Common beta-chain in the GM-CSF, IL-3 and IL-5 rec | 98.72 | |
| d1y6kr1 | 99 | Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa | 98.61 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.6 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.59 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.44 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.39 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.36 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.31 | |
| d2dtge2 | 196 | Insulin receptor {Human (Homo sapiens) [TaxId: 960 | 98.29 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.27 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.27 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.24 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.23 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.21 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.17 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.16 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.16 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.15 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.15 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.15 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.14 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.14 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.13 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.12 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.11 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.11 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.1 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.09 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.09 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.09 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.08 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.07 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.06 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.06 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.05 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.05 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.05 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.05 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.04 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.03 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.02 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.01 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.01 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.01 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 97.99 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.99 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 97.99 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.99 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.98 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.98 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 97.98 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.98 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.98 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.97 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.97 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.96 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 97.96 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 97.96 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 97.95 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.95 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.95 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.94 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.94 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.93 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.93 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.93 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.93 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 97.92 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.91 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.91 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.91 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.91 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.91 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.91 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.9 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.9 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.89 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.89 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 97.89 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.89 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.88 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.88 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.88 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.88 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.88 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.87 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.87 | |
| d2qfra1 | 112 | Purple acid phosphatase, N-terminal domain {Kidney | 97.87 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.86 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.86 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 97.86 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.84 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.84 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 97.84 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 97.84 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.84 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.83 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.83 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.83 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 97.82 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.82 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.82 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.82 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 97.82 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.82 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.81 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 97.81 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.8 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.79 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.79 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.79 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.79 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.78 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.78 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.78 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 97.77 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.77 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.77 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.76 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.76 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1xzwa1 | 119 | Purple acid phosphatase, N-terminal domain {Sweet | 97.75 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.75 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.75 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.75 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.74 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 97.74 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.73 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.73 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.73 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.73 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.72 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.72 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.71 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 97.71 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.7 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.7 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.7 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.7 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.69 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.69 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.69 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.69 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.69 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.69 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.69 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.68 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.68 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.68 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.67 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.67 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 97.67 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 97.67 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.66 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 97.66 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.66 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.66 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.65 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.65 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.63 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.63 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.63 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.63 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.63 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.62 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.62 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.62 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.61 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.61 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.61 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.61 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.61 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.6 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.6 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.6 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.59 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.59 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 97.59 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.59 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.57 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.57 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.56 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.56 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.56 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.56 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.56 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.55 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.55 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.55 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.55 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.54 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.54 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 97.54 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.54 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 97.54 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.53 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.53 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.53 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.53 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.53 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.53 |
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.1e-18 Score=129.46 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=91.8
Q ss_pred CCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCc
Q psy14886 366 ELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGN 444 (505)
Q Consensus 366 ~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~ 444 (505)
++|.|.++.....++|.++.| ++|.++.+...+.++|.|.|++ +.+.+|+|++|.|+|+..+... +....... .
T Consensus 1 ~~G~G~pss~~v~~~T~~~~P-~~P~~~~~~~~~~~sv~v~W~~--P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~-~- 75 (117)
T d1wfoa1 1 RIGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQP--PAAPNGIILAYQITHRLNTTTANTATVEVLA-P- 75 (117)
T ss_dssp CCCCCCCCCCCSCCCCSCCCC-CCCCCCEEEEECSSEEEEECCC--CSCCCSCCCEEEEEEEESSCCCSCCCEEEEC-T-
T ss_pred CccCCCCCCCCEEEECCCCCC-cCCCCcEEEEecCCEEEEEEEC--CCCCCCceEEEeeeeeeccCCCceEeEEecC-C-
Confidence 368888887766788887777 6999999998899999999997 4566889999999999887433 33222222 2
Q ss_pred eeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 445 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 445 ~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
....+.|.+|.|++.|.|+|+|+|.+|.|++|+.+.+.|.
T Consensus 76 -~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~tT~ 115 (117)
T d1wfoa1 76 -SARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE 115 (117)
T ss_dssp -TCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCS
T ss_pred -ceEEEEECCCCCCCEEEEEEEEECCCcCCCCcCCEEEECC
Confidence 3457889999999999999999999999999998887663
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.7e-18 Score=125.30 Aligned_cols=107 Identities=20% Similarity=0.227 Sum_probs=88.8
Q ss_pred ccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEE-eeecCceeeEEEEcCCccc
Q psy14886 379 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET-LKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 379 ~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~L~p 457 (505)
+.|.+++|++||.++.+...+.+++.|.|++|+..+.++++.+|.|.|+..+...+.... ...........+.|.+|.|
T Consensus 1 v~T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 80 (109)
T d1va9a1 1 ISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKK 80 (109)
T ss_dssp SCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCS
T ss_pred CCCcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCc
Confidence 357789999999999999999999999999988888899999999999998733332211 1222233567889999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
++.|.|+|+|+|.+|.|++|+++.+.|.
T Consensus 81 ~t~Y~~~V~a~n~~G~g~~S~~v~~~T~ 108 (109)
T d1va9a1 81 FAQYGVVVQAFNRAGTGPSSSEINATTL 108 (109)
T ss_dssp SCCEEEEEEEEETTEECCCCCCEECCCC
T ss_pred ceEEEEEEEEEcCCcCCCCCCCEEEEcC
Confidence 9999999999999999999999998874
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.71 E-value=2.4e-17 Score=120.74 Aligned_cols=99 Identities=27% Similarity=0.542 Sum_probs=82.3
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
+++|..+|.++.+...+.++|.|+|+++++.+.+|++++|+|.|+..+ ...|....+.. .....+.|.+|.|++.|
T Consensus 1 P~~P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y 77 (105)
T d1cfba2 1 PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD---WRQNNIVIADQPTFVKY 77 (105)
T ss_dssp CCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECC---TTCCEEEECSCCSSCEE
T ss_pred CCCCCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecC---CCccEEEECCCCCCCEE
Confidence 457888999999999999999999999888999999999999999877 55566544432 23457889999999999
Q ss_pred EEEEEEecCCCCCCCCce-EEEee
Q psy14886 462 EVKVQAINDVGPGPESEV-VTIWH 484 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~-~~~~t 484 (505)
.|+|+|+|.+|.|++|.. +...|
T Consensus 78 ~~~V~A~N~~G~gp~S~~~v~~~t 101 (105)
T d1cfba2 78 LIKVVAINDRGESNVAAEEVVGYS 101 (105)
T ss_dssp EEEEEEEETTEECSSCCCCEEEES
T ss_pred EEEEEEEeCCcCCCCCCCcEeEcC
Confidence 999999999999999865 44344
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=9.9e-18 Score=120.71 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=77.5
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
||++|.++.+...+.++|.|+|++ |..+++++|++|.|+|+..+...|..... .....+.+.+.+|.+++.|.|||
T Consensus 1 PP~~P~~~~v~~~~~~sv~l~W~p-P~~~~~~~i~~Y~V~~~~~~~~~~~~~~~---~~~~~~~~~v~~L~~~~~Y~frV 76 (98)
T d1x5ya1 1 PTSAPQHLTVEDVTDTTTTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVPANK---EPVERCGFTVKDLPTGARILFRV 76 (98)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEEC-CSCCCSSCCCEEEEEEEETTCCCCEESSS---SCBSSSEEEEECCCTTCCEEEEE
T ss_pred CCCCCcCcEEEEccCCEEEEEEEC-CCcCCCCCceEEEEEEEecCcceeEEeee---ecCceeEEEECCCcCCeEEEEEE
Confidence 678999999998999999999997 45666778999999999999888875432 22344678899999999999999
Q ss_pred EEecCCCCCCCCceEE
Q psy14886 466 QAINDVGPGPESEVVT 481 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~ 481 (505)
+|+|.+|.|++|....
T Consensus 77 ~A~n~~G~s~~s~~~~ 92 (98)
T d1x5ya1 77 VGVNIAGRSEPATLLQ 92 (98)
T ss_dssp EEEETTEECCCCCCSS
T ss_pred EEECCCcCCCCcCCCC
Confidence 9999999999887643
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.2e-18 Score=128.26 Aligned_cols=107 Identities=25% Similarity=0.240 Sum_probs=89.9
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.++|.++.|..+|.++.+...+.++|.|.|++|+....+|.|.+|+|+|+..+...+..... .......+.|.+|.|
T Consensus 3 ~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~---~~~~~~~~~i~~L~p 79 (119)
T d1x5ha1 3 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETL---VSGTQLSQLIEGLDR 79 (119)
T ss_dssp CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCB---CCTTCCEEEEECCCS
T ss_pred EEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeee---cCCCccEEEeCCCCC
Confidence 56788899989999999999999999999999777888999999999999887443332221 122346788999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
++.|.|+|+|+|.+|.|++|+.+.+.|.+.
T Consensus 80 ~t~Y~~~V~A~n~~G~G~~S~~~~~~T~~~ 109 (119)
T d1x5ha1 80 GTEYNFRVAALTINGTGPATDWLSAETFES 109 (119)
T ss_dssp SCEEEEECEEEETTEEEEECCCEEEECCSS
T ss_pred CCEEEEEEEEEcCCcCCCCCCCEEEEeCCC
Confidence 999999999999999999999999988643
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.6e-17 Score=119.54 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=79.6
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|.+|....+. ...++|.|.|++ |..+++.+|++|.|+|+..+...|...............+.|.+|.|++.|.|||+
T Consensus 3 P~~P~~~~~~-~~~~sv~l~W~~-P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~ 80 (101)
T d2haza1 3 PSSPSIDQVE-PYSSTAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA 80 (101)
T ss_dssp CCCCEEEEEE-ECSSCEEEEEEC-CSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEE
T ss_pred CcCCccCEEE-eeCCEEEEEEeC-CCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEE
Confidence 3577655554 567899999998 34556668999999999998888876655543333446789999999999999999
Q ss_pred EecCCCCCCCCceEEEeecc
Q psy14886 467 AINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t~p 486 (505)
|+|.+|.|++|+.+.+.|.|
T Consensus 81 A~N~~G~g~~S~~~~~~T~P 100 (101)
T d2haza1 81 ALNGKGLGEISAASEFKTQP 100 (101)
T ss_dssp EEETTEECCCCCCEEEECCC
T ss_pred EEeCCcCcCCCCceeEEeCC
Confidence 99999999999999999987
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.9e-17 Score=122.24 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=86.7
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.|.+|... .+.|.+..|..||.++.. ....+.|.|.|+++++.+.+|.|++|+|+|+..+...|......
T Consensus 1 G~s~~S~~v-~v~T~~~~P~~pp~~~~~-~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~~------- 71 (117)
T d1wj3a_ 1 GSSGSSGTV-NVTTKKTPPSQPPGNVVW-NATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTN------- 71 (117)
T ss_dssp CCCCCCCCC-CCCCSCCCCCCCCCSCBC-CEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEES-------
T ss_pred CcCCCCCCE-EEEcCCCCcCCCCcceEE-eecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeece-------
Confidence 566666664 778888888878877654 46688999999998888999999999999999886666543321
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
..+.+.+|.|++.|.|+|+|+|.+|.|++|+.+.+.+.
T Consensus 72 ~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S~~v~v~~~ 109 (117)
T d1wj3a_ 72 KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRI 109 (117)
T ss_dssp SSEEEEECCCSSCEEEEEEEEESSCCCCBCCCEEECCC
T ss_pred eeEEEeeccCCcEEEEEEEEEcCCccCCCCCCEEEecc
Confidence 23445578999999999999999999999998877543
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=5.7e-17 Score=115.33 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=77.7
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
+|+.+|.++++.....++|.|+|+++ ....++.+++|+|+|+..+.. +.. .. ..+.+.|++|.|++.|.|+
T Consensus 1 a~p~~p~~L~~~~~~~~si~vsW~~p-~~~~~~~~i~Y~i~~~~~~~~-~~~-~~------~~t~~~i~~L~p~t~Y~~r 71 (94)
T d1x5aa1 1 AESLSGLSLKLVKKEPRQLELTWAGS-RPRNPGGNLSYELHVLNQDEE-WHQ-MV------LEPRVLLTKLQPDTTYIVR 71 (94)
T ss_dssp CCCCCSCCCCEEEEETTEEEEECCCC-CSSCCSSCCEEEEEEECSSCE-EEE-EE------SSSEEEEESCCSSCEEEEE
T ss_pred CcCCCCCceEEEEcCCCEEEEEEecc-cCCCCCcEEEEEEEEecCCce-EEE-ee------ccCEEEECCCCCCCEEEEE
Confidence 46678899999999999999999985 345677778999999987632 221 11 1246789999999999999
Q ss_pred EEEecCCCCCCCCceEEEeecce
Q psy14886 465 VQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 465 v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|+|+|.+|.|++|+.+.+.|.||
T Consensus 72 V~A~n~~G~g~~S~~~~~~T~PP 94 (94)
T d1x5aa1 72 VRTLTPLGPGPFSPDHEFRTSPP 94 (94)
T ss_dssp EEEECSSSCCCCCCCEEEECCCC
T ss_pred EEEEcCCcCcCCCCCEEEEeCCC
Confidence 99999999999999999999886
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.3e-17 Score=118.46 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=79.5
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
..|++|.++.+...+.++|.|.|++ +...+|+|.+|.|+|+..+...|...... ...+.|.+|.|++.|.|+
T Consensus 9 ~vP~~P~~l~v~~~s~~si~l~W~~--P~~~~g~i~~Y~v~~~~~~~~~~~~~~~~------~~~~~i~~L~p~t~Y~~~ 80 (103)
T d1x5ga1 9 QLPGPAPNLRAYAASPTSITVTWET--PVSGNGEIQNYKLYYMEKGTDKEQDVDVS------SHSYTINGLKKYTEYSFR 80 (103)
T ss_dssp SCCCCCSSCEEEEEETTEEEEECCC--CSCCSSCCSEEEEEEEETTCCCCCCEEEC------SSEEEECSCCTTCEEEEE
T ss_pred CCcccCCCcEEEEccCCEEEEEEEC--CcCCCccEEEEEEEEEeCCCceeEEEecc------ccEEecCCCCCCCEEEEE
Confidence 3457888999998999999999997 56778999999999999887766644332 256889999999999999
Q ss_pred EEEecCCCCCCCCceEEEeec
Q psy14886 465 VQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 465 v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|+|+|.+|.|++|+.+.++|.
T Consensus 81 V~A~n~~G~g~~S~~v~v~T~ 101 (103)
T d1x5ga1 81 VVAYNKHGPGVSTPDVAVRTL 101 (103)
T ss_dssp EEEECSSCCCCBCCCCCEECC
T ss_pred EEEEcCCcCcCCCCCEEEEcC
Confidence 999999999999999888775
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7e-17 Score=115.74 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=69.3
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
...++|.|+|++ |..+++.+|++|.|+|+..+...|...... ..+.+.+.+|.|++.|.|||+|+|.+|.|++|
T Consensus 14 ~~~~sv~l~W~~-P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~-----~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S 87 (97)
T d2crza1 14 PKAKEIQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPREVYQG-----SEVECTVSSLLPGKTYSFRLRAANKMGFGPFS 87 (97)
T ss_dssp CCSSEEEEECCC-CSCCTTSCCCEEEEEEECTTSCCCEEEEEE-----SCSEEEEESCCTTCEEEECCEEECSSCBCCCC
T ss_pred eeCCEEEEEEeC-CCcCCCCceeEEEEEEEcCcCCceeEeecC-----CceEEEEcCCCCCEEEEEEEEEecCCeEcCCc
Confidence 457899999997 345555689999999999887788755322 23568899999999999999999999999999
Q ss_pred ceEEEeecc
Q psy14886 478 EVVTIWHDP 486 (505)
Q Consensus 478 ~~~~~~t~p 486 (505)
+.+.+.|.|
T Consensus 88 ~~~~~~T~p 96 (97)
T d2crza1 88 EKCDITTAP 96 (97)
T ss_dssp CCEEEECCC
T ss_pred CCCeEEeCc
Confidence 999998875
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.4e-17 Score=114.71 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++.+...+.++|.|.|++ +.+.++++++|.|+|+..+...|..... ..+.+.|.+|.|++.|.|+|+|
T Consensus 2 ~~P~~~~v~~~s~~si~l~W~~--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~------~~~~~~i~~L~p~t~Y~~~V~A 73 (93)
T d1x4xa1 2 DQCKPPQVTCRSATCAQVNWEV--PLSNGTDVTEYRLEWGGVEGSMQICYCG------PGLSYEIKGLSPATTYYCRVQA 73 (93)
T ss_dssp CCCCCCCCEEEETTEEEEECCC--CSCSSSCCCEEEEEEESSTTSCCEEEEE------SCSEEEEESCCSSCEEEEEEEE
T ss_pred cCCCCCEEEEeCCCeEEEEEEe--cccCCCeeEEEEEEEccCCCcceEeecC------CccEEEEcccceeeEEEEEEEE
Confidence 4666777777889999999998 4567889999999999887665554332 2356889999999999999999
Q ss_pred ecCCCCCCCCceEEEeecce
Q psy14886 468 INDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 468 ~n~~G~g~~s~~~~~~t~p~ 487 (505)
+|.+|.|++|+.+.+.|.|.
T Consensus 74 ~n~~G~s~~S~~~~~~Tpps 93 (93)
T d1x4xa1 74 LSVVGAGPFSEVVACVTPPS 93 (93)
T ss_dssp ECSSCCCCBCCCEEEECCCC
T ss_pred EECCcCcCCCCcEEEEeCCC
Confidence 99999999999999988763
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.3e-16 Score=116.42 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=83.3
Q ss_pred CccCCCCCCCCCCceeeee--ccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEc
Q psy14886 378 QYNTPADKPYQAPSRIGGG--GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRI 452 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~--~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l 452 (505)
...|.+..|..||.++.+. ..+.++|.|+|++ +.+.+|.|.+|.|.|+..+.. .|....... ..+.+.|
T Consensus 3 ~~~T~~~~P~~pP~~~~v~~~~~~~~sv~v~W~~--P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~----~~~~~~i 76 (111)
T d1x5ka1 3 HGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQP--PSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG----NRLTHQI 76 (111)
T ss_dssp SSCSCCCCCCSCCEEEEEEECSSCTTCEEEEEEC--CSCCSSCCCEEEEEEESCSSSCTTTSEEEEEST----TCSEEEE
T ss_pred ceEeCCCCCCCCCCCcEEEEecCCCCEEEEEEEc--cccCCCceeeeEEeeeecCCCCcceeEEEEeCC----CeeEEEE
Confidence 4567788899999998875 3567799999998 567789999999999986633 344333322 3457889
Q ss_pred CCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 453 ~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.+|.|++.|.|+|+|+|.+|.|++|+.+.++|.+
T Consensus 77 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~T~~ 110 (111)
T d1x5ka1 77 QELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110 (111)
T ss_dssp CSCCSSSEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred CCCCCCCEEEEEEEEEcCCCCcCCCCCEEEECCC
Confidence 9999999999999999999999999999998864
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.7e-17 Score=119.10 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=83.2
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
.++|.++.| .+|.++.+...+.++|.|.|++ +.+.+|.|.+|+|+|+..+... +....... ....+.|.+|.
T Consensus 3 ~v~T~e~vP-~~p~~l~~~~~~~~sv~l~W~~--P~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~ 75 (106)
T d1wfna1 3 LVRTHEDVP-GPVGHLSFSEILDTSLKVSWQE--PGEKNGILTGYRISWEEYNRTNTRVTHYLPN----VTLEYRVTGLT 75 (106)
T ss_dssp SCCSSCCSC-CCCSCCEEESCCSSEEEEECCC--CTTCCSCCCEEEEEEEESSCGGGCCCEEECS----SCCEEEEESCC
T ss_pred EEEcCCCCC-cCCCCcEEEEecCCEEEEEEEC--CCCCCCcEEeEEEEEEECCCCcceEEEecCC----CeeEEEEccCC
Confidence 467777777 5899999998899999999997 5667889999999999987443 33222222 23578899999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|++.|.|+|+|+|.+|.|++|+.+...+.||
T Consensus 76 p~t~Y~~~V~A~n~~G~g~~s~~~~~t~~pP 106 (106)
T d1wfna1 76 ALTTYTIEVAAMTSKGQGQVSASTISSGVPP 106 (106)
T ss_dssp TTCEEEEEEEEECSSCEEEEEEEEEECCCCC
T ss_pred CCCEEEEEEEEECCCCCcCCcCCEEccCCCC
Confidence 9999999999999999999998887766654
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.2e-16 Score=115.17 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=79.0
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+|.+|..+.+...+.++|.|.|++ +.+.+|++.+|.|+|+..+...+....... ....+.|.+|.|++.|.|+|
T Consensus 3 ~P~~p~~~~~~~~s~~si~v~W~~--P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V 76 (98)
T d1x5la1 3 APSQVVVIRQERAGQTSVSLLWQE--PEQPNGIILEYEIKYYEKDKEMQSYSTLKA----VTTRATVSGLKPGTRYVFQV 76 (98)
T ss_dssp CCCCCCCEECSCBCSSCEEEEECC--CSCCCSCCCEEEEEEEESSSCCSSCEEEEE----SSSEEEECSCCTTCEEEECE
T ss_pred CCCCCCceEEEeccCCEEEEEEEC--CCCCCCCEEEEEEEeecccccceeeEEecC----CceEEEECCCCCCCEEEEEE
Confidence 446888999999999999999998 466788999999999988754444333322 23578899999999999999
Q ss_pred EEecCCCCCCCCceEEEeecc
Q psy14886 466 QAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t~p 486 (505)
+|+|.+|.|++|+.+.+.|..
T Consensus 77 ~a~n~~G~g~~S~~v~~~T~~ 97 (98)
T d1x5la1 77 RARTSAGCGRFSQAMEVETGK 97 (98)
T ss_dssp EEEETTEECCCCCCEEEECCC
T ss_pred EEEcCCCCcCCCCCEEEEcCC
Confidence 999999999999999998864
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.7e-16 Score=113.21 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=75.0
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|.+|.++.+.....++|.|.|++ +.+++++|.+|.|+|+..++..+...... . ..+.+.|.+|.|++.|.|+|.
T Consensus 1 P~~P~~~~~~~~~~~sv~l~W~~--p~~~~~~I~~Y~i~~~~~~~~~~~~~~~~--~--~~~~~~i~~L~p~t~Y~~~V~ 74 (93)
T d2vkwa2 1 PSAPKLEGQMGEDGNSIKVNLIK--QDDGGSPIRHYLVRYRALSSEWKPEIRLP--S--GSDHVMLKSLDWNAEYEVYVV 74 (93)
T ss_dssp CCCCEEEEEECTTSSCEEEEEEC--CCCTTSCCCEEEEEEEETTSCCCCCEEEC--T--TCCEEEECSCCTTCEEEEEEE
T ss_pred CCCCccCEeEEcCCCEEEEEeeC--CCCCcCceEEEEEEeeecCcceeeeeecc--C--CceEEEEeccccceEEEEEEE
Confidence 46899999999999999999998 56888999999999999875433322222 2 345788999999999999999
Q ss_pred EecCCCCCCCCceEEEeec
Q psy14886 467 AINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t~ 485 (505)
|+|.+|.|++|.. .++|.
T Consensus 75 A~N~~G~s~ps~~-~~~T~ 92 (93)
T d2vkwa2 75 AENQQGKSKAAHF-VFRTA 92 (93)
T ss_dssp EEETTEECCCEEE-EEECC
T ss_pred EEcCCCCcCCEeE-EEEec
Confidence 9999999999964 46654
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.3e-16 Score=115.75 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=76.3
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
..||.+|.++.+...+.++|.|.|++ +.+++++|++|.|+|+..+ ...|......... ....+.+.+|.|++.|.
T Consensus 8 ~~pP~~P~~~~v~~~~~~sv~l~W~p--~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~L~p~t~Y~ 83 (108)
T d1x4za1 8 LSPPEAPDRPTISTASETSVYVTWIP--RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP--SRLSVEITGLEKGISYK 83 (108)
T ss_dssp CCCCCCCCCCEEEECCSSEEEEECCC--CCCTTSCCCEEEEEEEESSSCCCCEEEEEEECT--TCCEEEEESCCTTCEEE
T ss_pred cCCCccCCCCEEEEccCCEEEEEEEC--CCCCCCccEEEEEEEEecCCCCceEEEEEeecC--CccEEEECCCCCCCEEE
Confidence 45677888888888889999999976 6678889999999999876 4566655443322 34578899999999999
Q ss_pred EEEEEecCCCCCCCCceEE
Q psy14886 463 VKVQAINDVGPGPESEVVT 481 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~ 481 (505)
|||+|+|.+|.|++|+...
T Consensus 84 frV~A~N~~G~s~~S~pS~ 102 (108)
T d1x4za1 84 FRVRALNMLGESEPSAPSR 102 (108)
T ss_dssp EEEEEEETTEECCCCCCCC
T ss_pred EEEEEECCCcCCCCCCCCC
Confidence 9999999999999987643
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.2e-16 Score=114.90 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=84.0
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
+.+|++|.++.+...+.++|.|+|++ |..+.++.+.+|+|.|+..+...|....... ...+.+.|.+|.|++.|.|
T Consensus 8 ~~~P~~P~~l~~~~~~~~sv~lsW~~-P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~p~t~Y~~ 83 (107)
T d1x5fa1 8 GPLPSAPRDVVASLVSTRFIKLTWRT-PASDPHGDNLTYSVFYTKEGIARERVENTSH---PGEMQVTIQNLMPATVYIF 83 (107)
T ss_dssp CCCCCCCEEEEEEEECSSCEEEEEEC-CSSCSSCCSSEEEEEEEETTCCCCEEEECSS---TTCSEEEECSCCTTCEEEE
T ss_pred CCCCcCCCccEEEEecCCEEEEEEEC-CccCCCCceEEEEEEEEeCCCCceEEEEEeC---CCccEEEecCCCCCCEEEE
Confidence 45567899999999999999999998 4567889999999999998866666554433 2346789999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeecc
Q psy14886 464 KVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+|+|+|..|.|++|+.+.+.|.|
T Consensus 84 rV~A~n~~G~g~~S~~i~v~T~~ 106 (107)
T d1x5fa1 84 RVMAQNKHGSGESSAPLRVETQP 106 (107)
T ss_dssp EEEEECSSCEEEECCCEEEECCC
T ss_pred EEEEEeCCCCcCCCCCEEEECCC
Confidence 99999999999999999998865
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-16 Score=117.00 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=82.8
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.++|.. .+|.+|.++.+...+.++|.|.|.+ +.+.+++|.+|.|+|+..+...+....... ....+.+.+|.|
T Consensus 3 vf~T~~-~~P~~P~~~~~~~~~~~sv~l~W~p--p~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~----~~~~~~~~~L~p 75 (105)
T d1x3da1 3 IFTTLS-CEPDIPNPPRIANRTKNSLTLQWKA--PSDNGSKIQNFVLEWDEGKGNGEFCQCYMG----SQKQFKITKLSP 75 (105)
T ss_dssp CCCCCC-SCCCCCCCCEEEEEETTEEEEECCC--CCCCSSCEEEEEEEECTTTSSSCCEEEEEE----SCSEEEEESCCT
T ss_pred eEECCC-CCCcCCCCCEEEEccCCEEEEEEEC--CCCCcCccEEEEEEEecCCCcceeEEEecC----CccEEEecCCcC
Confidence 455655 4447899999999999999999998 567888999999999877655444333332 345788999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
++.|.|||+|+|.+|.|++|+.+.+.|.
T Consensus 76 ~t~Y~frV~A~N~~G~s~~S~~~~~~T~ 103 (105)
T d1x3da1 76 AMGCKFRLSARNDYGTSGFSEEVLYYTS 103 (105)
T ss_dssp TCEEEEECCEEESSCBCCCCCCEEEECS
T ss_pred CcEEEEEEEEECCCeEcCCCCcEEEECC
Confidence 9999999999999999999999999885
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=2.7e-16 Score=114.35 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=81.3
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCc---EEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF---QSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
|..+|.++.+...+.++|.|+|+++++...++.+++|.|.|+..+...+ ...... .....+.|.+|.|++.|.
T Consensus 1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p~t~Y~ 76 (101)
T d1x4ya1 1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVE----GDRYWHSISHLQPETSYD 76 (101)
T ss_dssp CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEE----TTCCEEEECSCCTTCEEE
T ss_pred CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEc----CCeeEEEEcCCCCCCEEE
Confidence 5678999999999999999999998889999999999999998764333 222222 133577899999999999
Q ss_pred EEEEEecCCCCCCCCceEEEeec
Q psy14886 463 VKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|+|+|+|..|.|++|+++.+.|.
T Consensus 77 ~~v~a~n~~G~s~~S~~~~~~T~ 99 (101)
T d1x4ya1 77 IKMQCFNEGGESEFSNVMICETK 99 (101)
T ss_dssp EEEEEECTTCCCCCCCCEEEECC
T ss_pred EEEEEEcCCCCCCCCCcEEEEcc
Confidence 99999999999999999999885
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.65 E-value=3.2e-16 Score=110.18 Aligned_cols=76 Identities=38% Similarity=0.630 Sum_probs=69.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|+++.|.|.+.|.|.+.++|+|||.+|. ...++.+.+++|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 13 v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~-------~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~ 84 (89)
T d1cs6a4 13 ADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-------SQNRIEVSGGELRFSKLV-LEDSGMYQCVAENKHGTVYASAE 84 (89)
T ss_dssp EETTCCEEEECEEEEESCCEEEEEETTEECC-------CCSSEEEETTEEEESSCC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred ECCCCcEEEEEEEEEEcCCEEEEEEeecccc-------ccceeeeeeeeEEEEeec-ccCCEEEEEEEEeCCCEEEEEEE
Confidence 4689999999999999999999999999998 456888889999999999 99999999999999999888888
Q ss_pred EEEE
Q psy14886 81 LRVL 84 (505)
Q Consensus 81 l~v~ 84 (505)
|.|.
T Consensus 85 l~V~ 88 (89)
T d1cs6a4 85 LTVQ 88 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2e-16 Score=114.07 Aligned_cols=94 Identities=21% Similarity=0.170 Sum_probs=77.0
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++.+...+.++|.|.|++ |..+.+..+.+|.++++..+...|....... ..+.+.|.+|.|++.|.|+|+|
T Consensus 2 ~~P~~~~v~~~~~~si~l~W~~-p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~v~~L~p~t~Y~~rV~A 76 (96)
T d1x5xa1 2 SMPASPVLTKAGITWLSLQWSK-PSGTPSDEGISYILEMEEETSGYGFKPKYDG----EDLAYTVKNLRRSTKYKFKVIA 76 (96)
T ss_dssp CCCCCCEEEEECSSEEEEECCC-CSSCCSSSSCEEEEEECCSSSSCCCEEEEEE----SCSEEEEESCCSSCEEEEEEEE
T ss_pred ccCCCCEEEEecCCEEEEEEEe-ecccCcceEeeeEEEeeeccceeeeEEeecC----CCCEEEECCCCCCCEEEEEEEE
Confidence 4677788888889999999998 3455566788898988887766665544433 3457889999999999999999
Q ss_pred ecCCCCCCCCceEEEeecc
Q psy14886 468 INDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 468 ~n~~G~g~~s~~~~~~t~p 486 (505)
+|.+|.|++|+++.+.|.|
T Consensus 77 ~n~~G~s~~S~~~~~~T~p 95 (96)
T d1x5xa1 77 YNSEGKSNPSEVVEFTTCP 95 (96)
T ss_dssp ECSSCEEEECCCEEEECCC
T ss_pred EcCCcEeCCCCCEEEEeCc
Confidence 9999999999999999876
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.9e-16 Score=115.33 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=81.4
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.+.|.++.| ++|.++.+...+.++|.|.|++| . ++.+.+|.|+|+..+...+....... ...+.|.+|.|
T Consensus 3 ~v~T~~~vP-~~P~~~~~~~~~~~si~l~W~~p--~--~~~i~~Y~i~y~~~~~~~~~~~~~~~-----~~~~~i~~L~p 72 (102)
T d1x5za1 3 QVITQTGVP-GQPLNFKAEPESETSILLSWTPP--R--SDTIANYELVYKDGEHGEEQRITIEP-----GTSYRLQGLKP 72 (102)
T ss_dssp CCCCCSCCC-CCCEEEEEECSSSSEEEEEEECC--S--CCCCCEEEECBEESSSCCCBCCEECS-----SSEEEEECCCT
T ss_pred EEECCCCCC-cCCCCeEEEEccCCEEEEEEECC--C--CCCccceEEEEEeCCCCceEEEEcCC-----cCEEEECCCCC
Confidence 456667777 58999999999999999999983 2 46799999999998766555333322 24678999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
++.|.|+|+|+|..|.|++|+.+.++|..
T Consensus 73 ~t~Y~~~V~A~n~~G~g~~S~~v~~~T~e 101 (102)
T d1x5za1 73 NSLYYFRLAARSPQGLGASTAEISARTMQ 101 (102)
T ss_dssp TCEEEECEEEECSSCEEEECCCEEEECCC
T ss_pred CCEEEEEEEEEcCCCEeCCCCCEEEEcCC
Confidence 99999999999999999999999998864
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.1e-16 Score=115.38 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=77.6
Q ss_pred CccCCCCCCCCCCce-eeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSR-IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~-~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
.+.|.++.| ++|.. +.+.....++|.|+|++ |..+++.++.+|.|+|+..+...|....... ..+.+.+.+|.
T Consensus 3 ~~~T~~~~P-~~P~~~~~~~~~~~~sv~l~W~~-P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~----~~~~~~i~~L~ 76 (107)
T d2crma1 3 EFTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEMAEGSNGNKWEMIYSG----ATREHLCDRLN 76 (107)
T ss_dssp SCCSCCCCC-CCCCCCEEEEEEETTEEEEECCC-CTTCCSSCCCEEEEEEEESSSSCCCEEEECS----SCSEEEECSCC
T ss_pred EEECCCCCC-cCCCCCEEEeeecCCEEEEEEEE-CccCCcceEEEEEEEEEeecCCCcEEEeecC----CccEEEEeccC
Confidence 466777666 45555 44445678899999997 3556667899999999987755544333322 34578999999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
|++.|.|||+|+|.+|.|++|+.+.+.|+
T Consensus 77 p~t~Y~~rV~A~n~~G~s~~S~~v~v~Tp 105 (107)
T d2crma1 77 PGCFYRLRVYCISDGGQSAVSESLLVQTP 105 (107)
T ss_dssp TTSCEEEEEEEEETTEECCCCCCCCCCCC
T ss_pred CCCEEEEEEEEECCCcCcCCCCcEEEECC
Confidence 99999999999999999999999987664
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.64 E-value=5.4e-16 Score=113.84 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=70.2
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeee--------cCceeeEEEEcCCcccee
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKE--------YGNVGIAVVRIPSEFYYT 459 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~l~~L~p~~ 459 (505)
||..+.+...+.++|.|+|.+ +.+++++|++|.|+|+..+ ...|....... ......+.+.|.+|.|++
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~--P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 79 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH 79 (107)
T ss_dssp CCCCCEEEECC---EEEEEEE--ECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSE
T ss_pred cCcCCEEEEEECCEEEEEEEe--CccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCc
Confidence 445556777789999999999 5678899999999999876 55666544321 223456789999999999
Q ss_pred eEEEEEEEecCCCCCCCCceEEEee
Q psy14886 460 EYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
.|.|||.|+|.+|.|++|+......
T Consensus 80 ~Y~frV~A~N~~G~s~~S~~s~~~~ 104 (107)
T d2ic2a1 80 TYRFRILAVYSNNDNKESNTSAKFY 104 (107)
T ss_dssp EEEEEEEEEETTSCEEECCCCCCEE
T ss_pred EEEEEEEEEcCCCCCCCCCCCCCEE
Confidence 9999999999999999987665443
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.9e-16 Score=113.81 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|..+.+...+.++|.|.|++ +.+.+|.|.+|.|+|+..+...|....... ....+.|.+|.|++.|.|+|+|+
T Consensus 3 ~~~~l~~~~~t~~si~l~W~~--p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A~ 76 (95)
T d2djsa1 3 TVPIMHQVSATMRSITLSWPQ--PEQPNGIILDYEIRYYEKEHNEFNSSMARS----QTNTARIDGLRPGMVYVVQVRAR 76 (95)
T ss_dssp CCSCCEEEEECSSEEEEECCC--CSCCSSCEEEEEEEEEETTSCSTTCEEEEE----SSSEEEEESCCTTCEEEEEEEEE
T ss_pred CCCccEEEeecCCEEEEEEEE--CCCCCcceEEeeeeeeeeccCcceeEeecC----CccEEEEeecCCccEEEEEEEEE
Confidence 344688888899999999998 567889999999999998866555444333 33578899999999999999999
Q ss_pred cCCCCCCCCceEEEeecc
Q psy14886 469 NDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 469 n~~G~g~~s~~~~~~t~p 486 (505)
|.+|.|++|+.+.++|.|
T Consensus 77 n~~G~g~~S~~~~~~T~~ 94 (95)
T d2djsa1 77 TVAGYGKFSGKMCFQTLT 94 (95)
T ss_dssp ESSCEEEECCCEEEECCC
T ss_pred cCCCCCCCCCCEEEEeCC
Confidence 999999999999999876
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.63 E-value=1e-15 Score=109.73 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=73.7
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
..|..+|.++.+...+.++|.|.|++ |....++.|++|+|+|+..+ ...|....+.. .....+.|.+|.|++.|.
T Consensus 4 ~~P~~~P~~~~v~~~s~tsv~l~W~~-P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~ 79 (95)
T d2ibga1 4 LDPMPVPELLEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEG---AHARSFKIAPLETATMYE 79 (95)
T ss_dssp SCCCCCCEECCCBCCSSSCEEEEEEC-CTTCCGGGCCEEEEEEEETTCCSCCEEEEEEC---TTCCEEEECSCCTTCEEE
T ss_pred CCCCCCCcCeEEEEeCCCEEEEEEEe-eeeccCCcccccceeEeeeeecceeeeeeccC---CceeEEEEeeccCCeEEE
Confidence 34556789999999999999999997 45666788999999999876 45566554432 134578899999999999
Q ss_pred EEEEEecCCCCCCCC
Q psy14886 463 VKVQAINDVGPGPES 477 (505)
Q Consensus 463 ~~v~a~n~~G~g~~s 477 (505)
|+|+|+|.+|.|++|
T Consensus 80 ~~V~A~n~~G~s~~S 94 (95)
T d2ibga1 80 FKLQSFSAASASEFS 94 (95)
T ss_dssp EEEEEECSSCBCCCC
T ss_pred EEEEEEeCCccCCCC
Confidence 999999999999998
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.63 E-value=8.3e-16 Score=108.11 Aligned_cols=74 Identities=27% Similarity=0.505 Sum_probs=66.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|++|+++.|.|.+.|.|.+.|+|+|++.+|. .+++.+.+++|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 15 v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~--------~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~~ 85 (89)
T d1biha4 15 VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS--------GGRATVTDSGLVIKGVK-NGDKGYYGCRATNEHGDKYFETL 85 (89)
T ss_dssp ECTTSCEEEECEEEEESCCCCEEEETTEECC--------SSSEEEETTEEEESSCC-STTCEEEEEEEEETTEEEEEEEE
T ss_pred EeCCCeEEEEEEEEEeCCCEEEEEeCCccCc--------cccEEEeeeeEEECCCC-hhhCEEEEEEEEECCCEEEEEEE
Confidence 4789999999999999999999999999986 34677788899999999 99999999999999998888888
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 86 l~V 88 (89)
T d1biha4 86 VQV 88 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.2e-15 Score=108.79 Aligned_cols=89 Identities=22% Similarity=0.412 Sum_probs=75.4
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
++|.++.+...+.++|.|.|++| ++.+.+|.|+|+..+...+....... ....+.+.+|.|++.|.|+|+|
T Consensus 3 ~aP~n~~~~~~s~~si~l~W~~p-----~~~~~~Y~i~y~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~A 73 (92)
T d1qg3a1 3 GAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDS----KVPSVELTNLYPYCDYEMKVCA 73 (92)
T ss_dssp CCCEEEEEEECSTTCEEEEEECC-----SSCCCEEEEEEEETTSCGGGCEEEEE----SSSEEEECSCCTTCEEEEEEEE
T ss_pred CcCCCCEEEEccCCEEEEEEEec-----CCCccceEEeeeeccccccEEEEecC----CccEEEECCCCCCcEEEEEEEE
Confidence 58999999999999999999983 35689999999998755555444333 3357889999999999999999
Q ss_pred ecCCCCCCCCceEEEeec
Q psy14886 468 INDVGPGPESEVVTIWHD 485 (505)
Q Consensus 468 ~n~~G~g~~s~~~~~~t~ 485 (505)
+|..|.|++|+.+.++|.
T Consensus 74 ~n~~G~g~~S~~~~~~T~ 91 (92)
T d1qg3a1 74 YGAQGEGPYSSLVSCRTH 91 (92)
T ss_dssp ECSSCBCCCCCCEEEECC
T ss_pred EeCCcCcCCCCCEEEEcC
Confidence 999999999999998874
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.9e-16 Score=114.62 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=76.4
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
.+++.+.+|. .|. +.+.....++|.|.|++ +.+++++|++|.|+|+..+. .|......... ..+.+.|.+|.|
T Consensus 6 ~v~~~P~~P~-~p~-~~~~~~~~~sv~l~W~~--P~~~~~~I~~Y~v~~~~~~~-~~~~~~~~~~~--~~~~~~i~~L~p 78 (108)
T d1wf5a1 6 RVRQLPHAPE-HPV-ATLSTVERRAINLTWTK--PFDGNSPLIRYILEMSENNA-PWTVLLASVDP--KATSVTVKGLVP 78 (108)
T ss_dssp SCCCCCCCCS-SCE-EEECSSSTTEEEEECCC--CCCCSSCEEEEEEEEECTTC-CCEEEESSCCT--TCCEEEEESCCT
T ss_pred EEecCCCCCC-CCE-EEEEeccCCEEEEEEEC--CCCCCCccEEEEEEEEeccC-CceEEeeeecC--CccEEEECCCCC
Confidence 3444444443 332 44556678899999998 56788899999999998774 45544433322 345788999999
Q ss_pred eeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 458 YTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
++.|.|||.|+|.+|.|++|+.+...|.|
T Consensus 79 ~t~Y~frV~A~N~~G~s~~S~~~~~~t~P 107 (108)
T d1wf5a1 79 ARSYQFRLCAVNDVGKGQFSKDTERVSLP 107 (108)
T ss_dssp TCEEEEEEEEEESSCEEEECCCCSCEECC
T ss_pred CCEEEEEEEEEcCCcCCCCcCCcCCEECC
Confidence 99999999999999999999988877765
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.3e-16 Score=115.86 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=75.5
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
|.+|.++.+...+.++|.|.|++ +.+.+++|++|.|+|+..+ ...|....... ..+.+.|.+|.|++.|.|+|
T Consensus 16 P~pP~~~~v~~~~~~sv~l~W~p--~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~----~~~~~~v~~L~p~t~Y~frV 89 (117)
T d1uema_ 16 PGPPSKPQVTDVTKNSVTLSWQP--GTPGTLPASAYIIEAFSQSVSNSWQTVANHV----KTTLYTVRGLRPNTIYLFMV 89 (117)
T ss_dssp CBCCCCCEEEEECSSCEEEECCC--CBCSSSCCCEEEEEEEETTTEEEEEEEEEEE----CSSEEEECSCCTTCEEEEEE
T ss_pred CcCCCCCEEEEccCCEEEEEEEC--CCcCCCCeEEEEEEEeccCCceeeEEecccc----ccccceECCCCCCCEEEEEE
Confidence 46889999988889999999997 6778889999999998876 34455443332 33578899999999999999
Q ss_pred EEecCCCCCCCCceEE-Eeec
Q psy14886 466 QAINDVGPGPESEVVT-IWHD 485 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~-~~t~ 485 (505)
+|+|.+|.|++|+... ++|.
T Consensus 90 ~A~N~~G~s~~S~~s~~v~t~ 110 (117)
T d1uema_ 90 RAINPQGLSDPSPMSDPVRTQ 110 (117)
T ss_dssp EEEETTEEEEECCCCCCEECC
T ss_pred EEEeCCcCCCCcCCCcCEEeC
Confidence 9999999999998764 4443
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.3e-16 Score=113.50 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
.|+.||.++.+...+.++|.|+|++ |..+++.+|++|.|+++..+...|...... ......+.+.+|.|++.|.||
T Consensus 1 ~Pp~pP~~p~~~~~t~~sv~lsW~~-P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~fr 76 (104)
T d1bpva_ 1 SPIDPPGKPVPLNITRHTVTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWLKANFS---NILENEFTVSGLTEDAAYEFR 76 (104)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCC-CSCCTTCCCSCCEEEEEETTSCCCEECCCS---CCCSSEEEECSCCSSCCEEEE
T ss_pred CCCCCCCCCEEEEecCCEEEEEEEe-ccccCcceEEEEEEEeecccccceeEEEee---ccceeEEEEcCCCCCCEEEEE
Confidence 3667888888888889999999998 456677789999999999887777644332 223467889999999999999
Q ss_pred EEEecCCCC-CCCCceEEEeec
Q psy14886 465 VQAINDVGP-GPESEVVTIWHD 485 (505)
Q Consensus 465 v~a~n~~G~-g~~s~~~~~~t~ 485 (505)
|+|+|.+|. |++|+.+...|.
T Consensus 77 V~A~n~~G~~s~~S~~s~~vt~ 98 (104)
T d1bpva_ 77 VIAKNAAGAISPPSEPSDAITC 98 (104)
T ss_dssp EEEECTTSCEEEEEEEEEEECS
T ss_pred EEEEECCCCCCCCcCCCCCEEe
Confidence 999999997 888887766553
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.61 E-value=8.6e-16 Score=111.30 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=72.0
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
.|.+|.++.+.. ..+++.|+|++ +.+.+++|++|.|+|+..+...|......... ....+.+.+|.|++.|.|+|
T Consensus 5 vP~~P~~~~v~~-~~~sv~lsW~p--p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~p~t~Y~frV 79 (100)
T d1cfba1 5 VPNAPKLTGITC-QADKAEIHWEQ--QGDNRSPILHYTIQFNTSFTPASWDAAYEKVP--NTDSSFVVQMSPWANYTFRV 79 (100)
T ss_dssp CCCCCEEEEEEE-CSSEEEEEEEC--CCCTTSCCCEEEEEEEESSSTTCCEEEEEEEE--TTCSEEEEECCSSEEEEEEE
T ss_pred CCCcCcCcEEEE-cCCEEEEEEcC--CcccccceEEEEEEEecCCCCceeeEEeeecC--CceEEEEecCCCCCEEEEEE
Confidence 456999999864 56789999997 56788999999999998775544433322211 22356777999999999999
Q ss_pred EEecCCCCCCCCceEEEee
Q psy14886 466 QAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t 484 (505)
+|.|.+|.|++|+.....|
T Consensus 80 ~A~n~~G~g~~S~~s~~vt 98 (100)
T d1cfba1 80 IAFNKIGASPPSAHSDSCT 98 (100)
T ss_dssp EEEETTEECCCCCCCCCEE
T ss_pred EEEeCCcCCCCcCCCcCEE
Confidence 9999999999998765444
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.7e-15 Score=112.41 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
..|++|.++.+...+.++|.|+|++ +.+++++|.+|.|+|+..... .|...... ......+.+.|.+|.|++.|
T Consensus 9 ~~P~~P~~~~~~~~~~~sv~l~W~p--p~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~L~p~t~Y 85 (111)
T d1wisa1 9 ELPGPPTNLGISNIGPRSVTLQFRP--GYDGKTSISRWLVEAQVGVVGEGEEWLLIHQL-SNEPDARSMEVPDLNPFTCY 85 (111)
T ss_dssp CCCCCCEEEEEESCCSSCEEEEEEC--CCCCSSCCSEEEEEECBSCCSTTSCCEEEEEE-ESCTTCSEEEECSCCTTSEE
T ss_pred CCCcCCCCCEEEEcCCCEEEEEEeC--CCCCCCceeEEEEeeeecccCCCcceeeeeee-ecccceeEEEeCCCCCCCEE
Confidence 3447999999998899999999997 678899999999999976632 23322222 22233457889999999999
Q ss_pred EEEEEEecCCCCCCCCceEE-Eeec
Q psy14886 462 EVKVQAINDVGPGPESEVVT-IWHD 485 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~~~-~~t~ 485 (505)
.|||+|+|.+|.|++|+... ++|.
T Consensus 86 ~frV~A~N~~G~s~~S~~s~~~~Tl 110 (111)
T d1wisa1 86 SFRMRQVNIVGTSPPSQPSRKIQTL 110 (111)
T ss_dssp CCCCEEECSSCBCCCCCCCCCEECC
T ss_pred EEEEEEEcCCcCCCCcCCCCCEEcc
Confidence 99999999999999998754 4443
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.6e-16 Score=127.76 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=82.1
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
.|.+|.++.+...+.+++.|+|++|...++.+.+|.|+|+......+.. .........+.+...|
T Consensus 2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~y 66 (196)
T d2dtge2 2 NPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF---------------ELDYCLKGLKLPSRTW 66 (196)
T ss_dssp CCCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCT---------------TCSSSCSCCCCCC---
T ss_pred cCcCCcCCEEEeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCCCCcee---------------EEeeEEeccccceeEE
Confidence 5889999999999999999999999877788999999988665433321 1122333337788999
Q ss_pred EEEEEEEcCCCcCCCCCCCCCccCCC------CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCC
Q psy14886 358 EFKVIAGNELGYGEPSSPSPQYNTPA------DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKND 431 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~~~~~~~t~~------~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~ 431 (505)
.+++.|.|..|.+..+... ...... ..+...+..+.+.......+.+.|..+ .........|.+.+...+.
T Consensus 67 ~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 143 (196)
T d2dtge2 67 SPPFESEDSQKHNQSEYED-SAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVP--RPSRKRRSLGDVGNAGNNE 143 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEcCCccccCcCCc-cceecCCCCccccccccCCcCcEEEeccCCceeecccCc--CCCccceEEEEEEeecCCC
Confidence 9999999998887655432 111111 122223444555555666777777762 2222223333333333332
Q ss_pred CCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC---CceEEEeecc
Q psy14886 432 TEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE---SEVVTIWHDP 486 (505)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~---s~~~~~~t~p 486 (505)
..+.... . .....+.|.+|.|++.|.|+|.|+|..|.|.. ++.+.++|.|
T Consensus 144 ~~~~~~~-~----~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT~P 196 (196)
T d2dtge2 144 EHRPFEK-V----VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMP 196 (196)
T ss_dssp CCSCSCE-E----CSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCC
T ss_pred ccEEEEe-c----cceEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeCCC
Confidence 2221111 1 12357889999999999999999999999864 5777777766
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.4e-15 Score=107.55 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|++|..+ +.....+++.|+|++ +.+.+|+|.+|+|+|+..+...|....... ....+.|.+|.|++.|.|+|+
T Consensus 1 P~~P~~~-~~~~~~~sv~l~W~p--P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~ 73 (94)
T d2dn7a1 1 PGRPTMM-ISTTAMNTALLQWHP--PKELPGELLGYRLQYCRADEARPNTIDFGK----DDQHFTVTGLHKGTTYIFRLA 73 (94)
T ss_dssp CCCCEEE-EEECSTTEEEEEEEC--CSSCSSCCCEEEEEEEETTCSSCEEEEEET----TCCEEEEECCCTTCEEEEEEE
T ss_pred CCCCcEe-EEEEeCCEEEEEEeC--CCCCCCceEEEEEEEEEcCCCCcEEEEcCC----CccEEEEEccCCeeEEEEEEE
Confidence 3567644 555778899999998 567788999999999999988888665544 345788999999999999999
Q ss_pred EecCCCCCCCCceEEE
Q psy14886 467 AINDVGPGPESEVVTI 482 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~ 482 (505)
|+|.+|.|++|+....
T Consensus 74 A~n~~G~g~~s~~~~~ 89 (94)
T d2dn7a1 74 AKNRAGLGEEFEKEIR 89 (94)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEcCCcCCCCccEEEe
Confidence 9999999999876543
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.58 E-value=3.3e-15 Score=104.86 Aligned_cols=80 Identities=31% Similarity=0.578 Sum_probs=71.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+..+..|+++.|.|.+.|.|.|.+.|++||..+..+.++.+ .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 9 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (89)
T d1cs6a4 9 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87 (89)
T ss_dssp CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee-eeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEE
Confidence 446789999999999999999999999999999987776655 4678999999999999999999999999888888887
Q ss_pred E
Q psy14886 177 L 177 (505)
Q Consensus 177 ~ 177 (505)
.
T Consensus 88 ~ 88 (89)
T d1cs6a4 88 Q 88 (89)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.5e-15 Score=110.80 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-----CCCcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-----DTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
|++|.++++...+.+++.|+|++ +.+.+|++++|.|+|+... ...|...... +.....+.+.+|.|++.|
T Consensus 3 P~~P~~~~~~~~~~~sv~v~W~~--P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y 77 (103)
T d1qg3a2 3 PSEPGRLAFNVVSSTVTQLSWAE--PAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD---NPKNRMLLIENLRESQPY 77 (103)
T ss_dssp CCCCCCCEEEEEETTEEEEECCC--CSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEEC---CTTCCEEEECCCCTTCCE
T ss_pred CccCCCcEEEEecCCEEEEEEEE--CccCCCCceEEEEEeeccccccccccceEEEEec---CCCceEEEEeecCCCCEE
Confidence 46899999999999999999998 6788899999999999876 2334433322 223467899999999999
Q ss_pred EEEEEEecCCCCCCCCceEEEeecc
Q psy14886 462 EVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 462 ~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.|+|+|+|.+|.|++++.+...+.+
T Consensus 78 ~~~V~A~n~~G~g~~s~~~v~~~t~ 102 (103)
T d1qg3a2 78 RYTVKARNGAGWGPEREAIINLATQ 102 (103)
T ss_dssp EEEEEEEETTEECCCEEEEECGGGC
T ss_pred EEEEEEEcCCccCCCcccccEEcCC
Confidence 9999999999999999877654443
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.3e-14 Score=104.90 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=75.3
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
....+.+|+++.|.|.+.|.|.+.+.|+++|..+....++.+.... .|.|.++...|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 87 (101)
T d2cqva1 8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 87 (101)
T ss_dssp CSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred CcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEE
Confidence 4567899999999999999999999999999999877777665433 5999999999999999999999999999999
Q ss_pred EEEEeCCe
Q psy14886 174 LIVLHGPS 181 (505)
Q Consensus 174 l~v~~~p~ 181 (505)
|.|...|.
T Consensus 88 l~V~~~P~ 95 (101)
T d2cqva1 88 LTVVDKPD 95 (101)
T ss_dssp EEEECSCS
T ss_pred EEEEecCC
Confidence 99987664
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.2e-15 Score=107.95 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=76.2
Q ss_pred CCCCceeeeecc--ccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 387 YQAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 387 ~~~P~~~~~~~~--~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
|.||.++++... ..+.|.|+|++|...+.++.++.|.|+|+..+...|....+.. ..+.+.|.+|.|++.|.||
T Consensus 2 P~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~r 77 (104)
T d1n26a3 2 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKD----LQHHCVIHDAWSGLRHVVQ 77 (104)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGG----GCSEEEESSCCTTCCEEEE
T ss_pred CcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeecccc----ceEEEEECCCCCCCEEEEE
Confidence 468999988654 4578999999966567888999999999999988888766543 3357889999999999999
Q ss_pred EEEecCCCCCCCCceEE
Q psy14886 465 VQAINDVGPGPESEVVT 481 (505)
Q Consensus 465 v~a~n~~G~g~~s~~~~ 481 (505)
|+|.|..|.|.+|+...
T Consensus 78 Vra~n~~g~g~wSewS~ 94 (104)
T d1n26a3 78 LRAQEEFGQGEWSEWSP 94 (104)
T ss_dssp EEEEETTTBSCCCCCCC
T ss_pred EEEEeCCCccCCcCCcC
Confidence 99999999999988654
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-15 Score=116.02 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=83.4
Q ss_pred CCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEE----EEeeecCceeeEEEEcCCcc
Q psy14886 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS----ETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~L~ 456 (505)
+.+++|+.+|.++.+...+.++|.|+|++++....++.+.+|.+.|+......+.. .............+.|.+|.
T Consensus 9 s~e~~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 88 (125)
T d1uena_ 9 SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE 88 (125)
T ss_dssp SCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCC
T ss_pred ccCcCCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCC
Confidence 55788989999999999999999999999766778899999999998765221110 00000111233578899999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|++.|.|+|+|+|..|.|++|+.+.+.|.+
T Consensus 89 p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 118 (125)
T d1uena_ 89 PFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118 (125)
T ss_dssp SSCEEEEEEEEEESSCEEEECCCEEEECCC
T ss_pred CCCEEEEEEEEEeCCcccCCCCCEEEECCC
Confidence 999999999999999999999999999864
|
| >d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Myosin binding protein C, fast-type species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=3.7e-14 Score=101.60 Aligned_cols=90 Identities=20% Similarity=0.324 Sum_probs=73.9
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCC-CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~-~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
||.+|.++.+..+..++++|+|.+|.+. +.+|.+|.|+|+..+...|........ ....+.+.+ |.+++.
T Consensus 1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~--------~~~~~~v~~-L~~~~~ 71 (98)
T d1x5ya1 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV--------ERCGFTVKD-LPTGAR 71 (98)
T ss_dssp CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCB--------SSSEEEEEC-CCTTCC
T ss_pred CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecC--------ceeEEEECC-CcCCeE
Confidence 6889999999999999999999988754 568999999999999888987543221 223455555 999999
Q ss_pred eEEEEEEEcCCCcCCCCCCC
Q psy14886 357 YEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~ 376 (505)
|.|||+|.|..|.|++|...
T Consensus 72 Y~frV~A~n~~G~s~~s~~~ 91 (98)
T d1x5ya1 72 ILFRVVGVNIAGRSEPATLL 91 (98)
T ss_dssp EEEEEEEEETTEECCCCCCS
T ss_pred EEEEEEEECCCcCCCCcCCC
Confidence 99999999999999877654
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.6e-15 Score=107.60 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=76.3
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccc--cCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREK--QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~--~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
|..||.++.+...+.++|.|+|++++... ..+.+.+|.|+|+..+...+....... ....+.|.||.|++.|.|
T Consensus 1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~ 76 (100)
T d1x5ja1 1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANA----TTLSYLVTGLKPNTLYEF 76 (100)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCB----CSSEEEEESCCTTCEECC
T ss_pred CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCC----CccEEEECCCCCCCEEEE
Confidence 56789999999999999999999853333 335667999999887754444333322 234688999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeec
Q psy14886 464 KVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
+|+|+|..|.|++|+.+.+.|.
T Consensus 77 ~V~a~n~~g~s~~S~~~~~~T~ 98 (100)
T d1x5ja1 77 SVMVTKGRRSSTWSMTAHGTTF 98 (100)
T ss_dssp EEEEECSSCBCCCCCCCCEECC
T ss_pred EEEEEeCCcCcCCCCeEEEEec
Confidence 9999999999999999988875
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=3.6e-15 Score=111.96 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=75.6
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc----CCCCcEEEEeeecCceeeEEEEcCCccce
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK----NDTEFQSETLKEYGNVGIAVVRIPSEFYY 458 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 458 (505)
...|+.+|.++.+...+.++|.|.|++ |..+++..+.+|.|+|+.. ....|..... . ..+.+.|.+|.|+
T Consensus 12 ~~~pp~~P~~p~v~~vt~~sv~l~W~~-P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~-~----~~~~~~v~~L~p~ 85 (120)
T d1wfua_ 12 KVVPLSKPHPPVVGKVTHHSIELYWDL-EQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT-G----YATRHVVEGLEPR 85 (120)
T ss_dssp TCCCCCCCCCCBCCCEETTEEEEECTT-TSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE-E----SCSEEEEESCCTT
T ss_pred cccCCCcCCCCEEeEecCCEEEEEEEC-CcccCcccccceeeeeeeecccccccceeeecc-c----cccEEeCCCCCCC
Confidence 445667777788888889999999998 3555566788888888743 2344443322 1 2356889999999
Q ss_pred eeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 459 TEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.|.|||+|+|.+|.|++|+.+.+.|.+
T Consensus 86 t~Y~frV~A~n~~G~s~~S~~~~~~T~~ 113 (120)
T d1wfua_ 86 TLYKFRLKVTSPSGEYEYSPVVSVATTR 113 (120)
T ss_dssp CEEEEEEEEECSSSCEEECCCEEEECCC
T ss_pred cEeeEEEEEEeCCcEeCCCCCEEEEeCC
Confidence 9999999999999999999999998864
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.7e-15 Score=110.91 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=78.4
Q ss_pred CccCCCCCCCCCCceeeeec-cccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGG-GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~-~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
.++|.+..|+.+|.++++.. .+.++|.|+|++|.....++.+.+|.+.|+....+........ .....+.+.|.+|.
T Consensus 2 ~~~T~~~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~~i~~L~ 79 (117)
T d2cspa1 2 EFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIF--PTADSTAVELVRLR 79 (117)
T ss_dssp CCCCCCCCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEECC--TTCSEEEEESHHHH
T ss_pred EEEeCCCCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeecccceeeee--eccceeeeeccCCC
Confidence 57788999999999999854 5667999999996554445555555555554332333322222 22345788999999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
+++.|.|+|+|+|.+|.|++|+.+.+.|.
T Consensus 80 ~~t~Y~v~V~A~n~~G~s~~S~~v~i~t~ 108 (117)
T d2cspa1 80 SLEAKGVTVRTLSAQGESVDSAVAAVPPE 108 (117)
T ss_dssp HHTCSCBEEEEEESSCCCCCCSCBCCCHH
T ss_pred CCcEEEEEEEEEcCCCcCCCCCCEEeeCC
Confidence 99999999999999999999999887774
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.54 E-value=8.1e-15 Score=102.93 Aligned_cols=86 Identities=31% Similarity=0.623 Sum_probs=71.3
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|.|...+ ...+.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+ ++.+ .++.|.|.++...|+|.|+|.|.|..|.
T Consensus 3 P~f~~~p-~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 79 (89)
T d1biha4 3 PKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV-TDSGLVIKGVKNGDKGYYGCRATNEHGD 79 (89)
T ss_dssp EEEEECC-CSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE-ETTEEEESSCCSTTCEEEEEEEEETTEE
T ss_pred CeEEECC-CCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE-eeeeEEECCCChhhCEEEEEEEEECCCE
Confidence 4454444 24467889999999999999999999999999998643 4444 4567999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy14886 168 DESKGRLIV 176 (505)
Q Consensus 168 ~~~~~~l~v 176 (505)
....+.|.|
T Consensus 80 ~~~~~~l~V 88 (89)
T d1biha4 80 KYFETLVQV 88 (89)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888887776
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.6e-15 Score=108.40 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
.+.||.++.+. .+.++|.|.|++ +.+.+++|.+|.|+|+..+ ..|......... ..+.+.+.+|.|++.|.|+|
T Consensus 7 ~~sPP~~~~~~-~t~~si~l~W~p--p~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~rV 80 (108)
T d1v5ja_ 7 GLSPPRGLVAV-RTPRGVLLHWDP--PELVPKRLDGYVLEGRQGS-QGWEVLDPAVAG--TETELLVPGLIKDVLYEFRL 80 (108)
T ss_dssp CCCCCEEEEEE-ECSSSEEEEEEC--CSCCSSCCCBEEEEEEETT-CCCEEEEEEECS--SCCEEECCCCCTTSCEECCB
T ss_pred CCCcCCCeEEE-EcCCEEEEEEEe--cccCCCceeEEEEEeeeee-eeeeeccccccc--eeeeEEEEeccCCcEEEEEE
Confidence 34589999875 467899999998 5677889999999999876 556544433322 34688999999999999999
Q ss_pred EEecCCCCCCCCceEEEeec
Q psy14886 466 QAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t~ 485 (505)
+|+|..|.|++|+.+.+.|.
T Consensus 81 ~A~n~~g~s~~S~~~~~~T~ 100 (108)
T d1v5ja_ 81 VAFAGSFVSDPSNTANVSTS 100 (108)
T ss_dssp EEEETTEEEEECSCCCCCCS
T ss_pred EEEeCCCEeCCcCceEEECC
Confidence 99999999999999888775
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.53 E-value=6.4e-15 Score=105.72 Aligned_cols=91 Identities=31% Similarity=0.438 Sum_probs=75.2
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcC
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
|.|...+ .+..+.+|+++.|.|.+.|.|.+.+.|+++|..+..+.++.+...+ .|.|.++..+|+|.|+|.|.|.
T Consensus 2 P~f~~~p--~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 79 (97)
T d1koaa1 2 PRFIVKP--YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS 79 (97)
T ss_dssp CEEEECC--CCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEET
T ss_pred CEEEEeC--CCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEEC
Confidence 4454444 3456899999999999999999999999999999876666554333 4999999999999999999999
Q ss_pred CCceeeeEEEEEEeCC
Q psy14886 165 HGMDESKGRLIVLHGP 180 (505)
Q Consensus 165 ~g~~~~~~~l~v~~~p 180 (505)
.|.....+.|.|...+
T Consensus 80 ~G~~~~~~~l~V~~~~ 95 (97)
T d1koaa1 80 YGTKEEIVFLNVTRHS 95 (97)
T ss_dssp TEEEEEEECCEEECSC
T ss_pred CCEEEEEEEEEEeecC
Confidence 9998888888886543
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.4e-14 Score=103.48 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=67.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|+++.|.|.+.|.|.+.+.|+||+..|.. ..++.+. ..+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 12 v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~-------~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~ 83 (101)
T d2cqva1 12 VRAGESVELFGKVTGTQPITCTWMKFRKQIQE-------SEHMKVENSENGSKLTILAAR-QEHCGCYTLLVENKLGSRQ 83 (101)
T ss_dssp EETTCCEEEEEEEESSSSCEEEEEESSSBCCC-------SSSEEEEECSSEEEEEETTCC-TTTCEEEEEEEECSSCEEE
T ss_pred EeCCCcEEEEEEEEecCCCEEEEEeCceeecc-------CCcEEEEEecceeEEEEeeCC-cccCEEEEEEEEECCCEEE
Confidence 46899999999999999999999999999873 3445442 2479999999 9999999999999999999
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 84 ~~~~l~V~~ 92 (101)
T d2cqva1 84 AQVNLTVVD 92 (101)
T ss_dssp CCEEEEEEC
T ss_pred EEEEEEEEe
Confidence 999999986
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=3.3e-14 Score=102.59 Aligned_cols=81 Identities=31% Similarity=0.558 Sum_probs=66.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
+.+|++++|.|.+.|.|.+.|+|+|+|..+..... ...+... ..++|.|.+++ .+|+|.|+|.|.|..|.....
T Consensus 17 ~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~---~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~ 92 (100)
T d1qz1a3 17 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVD-KNDEAEYVCIAENKAGEQDAS 92 (100)
T ss_dssp TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC-----CCSSEEECTTSCEEEECSCC-GGGCEEEEEEEEETTEEEEEE
T ss_pred EcCCCCEEEEEEEEEecCCEEEEEeCCcccccccc---cceeEEeecCceEEEeCCCC-cccCEEEEEEEEECCCEEEEE
Confidence 36799999999999999999999999999874321 1122222 35789999999 999999999999999998888
Q ss_pred EEEEEEe
Q psy14886 79 AQLRVLT 85 (505)
Q Consensus 79 ~~l~v~~ 85 (505)
+.|.|..
T Consensus 93 ~~l~V~~ 99 (100)
T d1qz1a3 93 IHLKVFA 99 (100)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 8888873
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=9.9e-15 Score=110.01 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=72.4
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-------cEEEEeeec-----CceeeEEEEcC
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-------FQSETLKEY-----GNVGIAVVRIP 453 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~l~ 453 (505)
.|++|.++.+.. ..++|.|.|++ +.+.+|+|++|.|+|+..+... +........ .......+.+.
T Consensus 7 ~P~aP~~v~v~~-~~~si~l~W~~--P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (123)
T d1wfta_ 7 GPGAPSTVRISK-NVDGIHLSWEP--PTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHI 83 (123)
T ss_dssp CCCCCEEEEEEE-CSSEEEEEEEC--CSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCC
T ss_pred CCcCCcccEEEe-CCCEEEEEecC--chhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEc
Confidence 346899999865 57899999998 5677889999999999876221 111111110 01112345788
Q ss_pred CccceeeEEEEEEEecCCCCCCCCceEEEeec
Q psy14886 454 SEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 454 ~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
+|.|++.|.|||+|+|.+|.|++|++..+.|.
T Consensus 84 ~L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~ 115 (123)
T d1wfta_ 84 DYTSRPAIVFRISAKNEKGYGPATQIRWLQGN 115 (123)
T ss_dssp BCSSSCEEEEEEEEBSSSSBCCCEEEEEECCS
T ss_pred CCCCCCEEEEEEEEecCCcCCCCCCcEEEEec
Confidence 99999999999999999999999999988774
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=6.6e-15 Score=104.07 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=62.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.|+|+|++..+.. ++...+++|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 17 ~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~---------~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~ 86 (91)
T d1cs6a3 17 ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---------KWLSSEPLLHIQNVD-FEDEGTYECEAENIKGRDTYQGR 86 (91)
T ss_dssp EETTCCEEEECEEEEESCCEEEEEECCSCCSC---------CCSBSSSEEEECSCC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred EecCCcEEEEEEEEEccCCEEEEEecccccce---------EeeeeeeEEEeCCCC-ccCCEEEEEEEEECCCEEEEEEE
Confidence 35899999999999999999999997754432 222346789999999 99999999999999999888888
Q ss_pred EEEE
Q psy14886 81 LRVL 84 (505)
Q Consensus 81 l~v~ 84 (505)
|.|.
T Consensus 87 l~V~ 90 (91)
T d1cs6a3 87 IIIH 90 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.51 E-value=1.3e-14 Score=103.97 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=65.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE--EECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|+++.|.|.+.|.|.+.+.|+|||.++..... ...+. ...++|.|.+++ .+|+|.|+|.|.|..|....+
T Consensus 17 v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~----~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~ 91 (97)
T d3dara1 17 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR----IGGYKVRNQHWSLIMESVV-PSDKGNYTCVVENEYGSINHT 91 (97)
T ss_dssp ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGS----TTCCEEEGGGTEEEECSCC-GGGCEEEEEEEEETTEEEEEE
T ss_pred ECCCCcEEEEEEEeEECCCEEEEEECCEeccccCc----eeeEEEcCCcEEEEECCCC-cccCEEEEEEEEECCCEEEEE
Confidence 46899999999999999999999999999974311 11122 234799999999 999999999999999998888
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 92 ~~l~Vl 97 (97)
T d3dara1 92 YHLDVV 97 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888773
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.51 E-value=3e-14 Score=103.18 Aligned_cols=89 Identities=31% Similarity=0.461 Sum_probs=74.7
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC----CCEEEcCCCCCCCEEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~ 162 (505)
+|.|...+ .+..+.+|+++.|.|.+.|.|.+.+.|+++|..+..+.++.+... .+|.|.++...|.|.|+|.|.
T Consensus 8 ~P~f~~~~--~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 85 (102)
T d1fhga_ 8 KPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 85 (102)
T ss_dssp EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCeEEcCC--CcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence 34454444 346788999999999999999999999999999988777665432 259999999999999999999
Q ss_pred cCCCceeeeEEEEEE
Q psy14886 163 NVHGMDESKGRLIVL 177 (505)
Q Consensus 163 ~~~g~~~~~~~l~v~ 177 (505)
|..|.....+.|.|.
T Consensus 86 N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 86 NSLGEATCTAELLVE 100 (102)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCcEEEEEEEEEEE
Confidence 999999888888874
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.51 E-value=1.9e-14 Score=102.26 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+|.+...+ .++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+.+....... .|.|.++...|+|.|+|.|.|
T Consensus 2 ~P~i~~~~--~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N 79 (93)
T d1wiua_ 2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79 (93)
T ss_dssp CCEECCCC--CEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred CCeEEeCC--CcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence 56665543 5678999999999999999999999999999988776665554333 599999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy14886 164 VHGMDESKGRLIV 176 (505)
Q Consensus 164 ~~g~~~~~~~l~v 176 (505)
..|.....+.|.|
T Consensus 80 ~~G~~~~~~~l~V 92 (93)
T d1wiua_ 80 ELGEDEAIFEVIV 92 (93)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE
Confidence 9999988888877
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.50 E-value=3.3e-14 Score=102.99 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=66.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--E---CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--Q---DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~---~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.|.|.+.+.|+|||.+|.. ..++.+ . ..+|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 20 v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~ 91 (102)
T d1fhga_ 20 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE-------SRHFQIDYDEEGNCSLTISEVC-GDDDAKYTCKAVNSLGEA 91 (102)
T ss_dssp EETTSCEEEEEEEEEESCCEEEEEETTEECCC-------SSSEEEEECTTCEEEEEESSCC-GGGCEEEEEEEEETTEEE
T ss_pred EecCCcEEEEEEEEeccCCeEEEEeeeccccc-------eeeEeEEEecCceeeeEecCCC-HHhCEEEEEEEEECCcEE
Confidence 35799999999999999999999999999983 344443 2 2479999999 999999999999999999
Q ss_pred EeeEEEEEEe
Q psy14886 76 YSSAQLRVLT 85 (505)
Q Consensus 76 ~~~~~l~v~~ 85 (505)
..++.|.|..
T Consensus 92 ~~~~~L~V~s 101 (102)
T d1fhga_ 92 TCTAELLVET 101 (102)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEE
Confidence 8888888863
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.50 E-value=9e-15 Score=104.91 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=65.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+++.|.|.+.|.|.+.|+|+||+..|..+ .++.+ ...+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 13 v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~-------~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~ 84 (97)
T d1koaa1 13 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQS-------VKYMKRYNGNDYGLTINRVK-GDDKGEYTVRAKNSYGTKE 84 (97)
T ss_dssp EETTSCEEEEEEEECSSCCEEEEEETTEECCSB-------TTBBCCCSTTEEEEEESCCC-SGGGSCEEEEEEETTEEEE
T ss_pred EeCCCcEEEEEEEEEcCCCEEEEEEeeecccee-------eEEEEEecCCeeEEEeCCCc-eecCEEEEEEEEECCCEEE
Confidence 358999999999999999999999999999743 23322 12369999999 9999999999999999988
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 85 ~~~~l~V~~ 93 (97)
T d1koaa1 85 EIVFLNVTR 93 (97)
T ss_dssp EEECCEEEC
T ss_pred EEEEEEEee
Confidence 888888875
|
| >d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.9e-13 Score=99.80 Aligned_cols=96 Identities=25% Similarity=0.406 Sum_probs=75.5
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.+|.+|..+.+..+..+++.|+|.++.+++.+|.+|.|+|+.... ..|......+. .....+.+.+|.+++
T Consensus 9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~L~p~t 80 (108)
T d1x4za1 9 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIP--------PSRLSVEITGLEKGI 80 (108)
T ss_dssp CCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEEC--------TTCCEEEEESCCTTC
T ss_pred CCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEEEeec--------CCccEEEECCCCCCC
Confidence 478899999999999999999999888888899999999997654 46665544332 233334444499999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCcc
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYN 380 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~ 380 (505)
.|.|||+|.|..|.|.+|.++..+.
T Consensus 81 ~Y~frV~A~N~~G~s~~S~pS~p~~ 105 (108)
T d1x4za1 81 SYKFRVRALNMLGESEPSAPSRPYV 105 (108)
T ss_dssp EEEEEEEEEETTEECCCCCCCCCEE
T ss_pred EEEEEEEEECCCcCCCCCCCCCCEE
Confidence 9999999999999999887654443
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.50 E-value=5.6e-14 Score=100.89 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=65.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-E--EC--CeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-I--QD--NVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-~--~~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.++|.|.+.|.|.+.++|+||+.+|.. ..++. . .+ .+|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 16 v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~N~~G~~ 87 (98)
T d1g1ca_ 16 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIER-------SDRIYWYWPEDNVCELVIRDVT-GEDSASIMVKAINIAGET 87 (98)
T ss_dssp EETTSCEEEEEEEEEESCCEEEEEETTEECCC-------CSSEEEEEEETTEEEEEECSCC-GGGCEEEEEEEEETTEEE
T ss_pred EcCCCcEEEEEEEEEecCCeEEEEeCceEEee-------eeeeEEEeccceEEEEEeccCc-cccCEEEEEEEEECCcEE
Confidence 45899999999999999999999999999973 23322 2 22 379999999 999999999999999999
Q ss_pred EeeEEEEEEe
Q psy14886 76 YSSAQLRVLT 85 (505)
Q Consensus 76 ~~~~~l~v~~ 85 (505)
...+.|.|..
T Consensus 88 ~~~~~L~V~~ 97 (98)
T d1g1ca_ 88 SSHAFLLVQA 97 (98)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEE
Confidence 8889888863
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.8e-14 Score=99.92 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
|.+|++++|.|.+.|.|.+.+.|++++..+ ...+.+|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 11 v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~-------------~~~~~~l~i~~v~-~~DsG~Y~C~a~N~~g~~~~~~~ 76 (84)
T d2nxyb2 11 LLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------------IQGGKTLSVSQLE-LQDSGTWTCTVLQNQKKVEFKID 76 (84)
T ss_dssp EETTCCEEEEEECCTTCCCEEEEECTTCCE-------------EEESSEEEESSCC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred EECCCeEEEEEEeEcCCchheEEEeecccc-------------eeeeeeeeeeecc-cccccEEEEEEEeCCCEEEEEEE
Confidence 468999999999999999999999976533 2356789999999 99999999999999999988999
Q ss_pred EEEEec
Q psy14886 81 LRVLTL 86 (505)
Q Consensus 81 l~v~~~ 86 (505)
|.|...
T Consensus 77 v~V~~~ 82 (84)
T d2nxyb2 77 IVVLAF 82 (84)
T ss_dssp ECEECC
T ss_pred EEEEec
Confidence 988863
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.3e-13 Score=100.57 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=70.5
Q ss_pred CCCCceeeee----ccccccEEEEEEeCCcc--ccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 387 YQAPSRIGGG----GGKIGDLSISWEPLPRE--KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 387 ~~~P~~~~~~----~~~~~~v~l~W~~~~~~--~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
|.||.++.+. ....++|.|+|++|... ..++.++.|.++|+..+...|...... ..+.+.|.+|.|++.
T Consensus 3 P~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~-----~~~~~~i~~L~p~t~ 77 (104)
T d3d48r2 3 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAG-----QQTEFKILSLHPGQK 77 (104)
T ss_dssp CCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEE-----TCSEEEECC--CCCE
T ss_pred CcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccc-----cccEEEECCCCCCCE
Confidence 5688888874 44577899999996433 345567899999999887777654432 235678999999999
Q ss_pred EEEEEEEecCCCC-CCCCceEEEeec
Q psy14886 461 YEVKVQAINDVGP-GPESEVVTIWHD 485 (505)
Q Consensus 461 Y~~~v~a~n~~G~-g~~s~~~~~~t~ 485 (505)
|.|||+|.|.+|. |++|+.+.++|+
T Consensus 78 Y~~rVrA~n~~G~ws~wS~~~~v~tP 103 (104)
T d3d48r2 78 YLVQVRCKPDHGYWSAWSPATFIQIP 103 (104)
T ss_dssp EEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred EEEEEEEEeCCCCCCCCcCCEEEECc
Confidence 9999999999998 999999988764
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=5.3e-14 Score=99.16 Aligned_cols=74 Identities=28% Similarity=0.410 Sum_probs=64.1
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+. +.|.+.+.|+|++..+.. .+....+++|.|.+++ .+|+|.|+|.|.|..|.....+
T Consensus 14 v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~--------~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~ 84 (89)
T d1gl4b_ 14 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP--------SRAMDFNGILTIRNVQ-PSDAGTYVCTGSNMFAMDQGTA 84 (89)
T ss_dssp ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC--------TTEEEETTEEEECSCC-GGGCEEEEEEEECSSCEEEEEE
T ss_pred EeCCCcEEEEEEccCCCCCCEEEEecCCceeec--------cccEeeceEEEEecCC-cccCEEEEEEEEECCCEEEEEE
Confidence 46899999999997 577899999999887652 3456678899999999 9999999999999999888888
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 85 ~l~V 88 (89)
T d1gl4b_ 85 TLHV 88 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.2e-14 Score=101.57 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.|..+.+.....++|.|+|++ +.+.++.+++|+|+|+... ...|....... . ....+.|.+|.|++.|.|+|+|
T Consensus 9 ~P~~p~~~~~~~~~v~l~W~p--p~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~-~--~~~~~~i~~L~p~t~Y~frVra 83 (105)
T d2d9qb2 9 MDPSPEAAPPQAGCLQLSWEP--WQPGLHINQKCELRHKPQRGEASWALVGPLP-L--EALQYELCGLLPATAYTLQIRC 83 (105)
T ss_dssp CCC-------CCSCEEEEEEC--CGGGTTSCEEEEEEEEESSSCCCCEEEEEEC-S--CEEEEEECSCCSCCCEEEEEEE
T ss_pred CCCCCEeecCCCCeEEEEEcC--CCCCCceeEEEEEEEEecCCccceeeeeccc-C--CcceeEEecccCCeEEEEEEEE
Confidence 445566666789999999998 5667789999999999876 55666544332 2 3467899999999999999999
Q ss_pred ecCCCCCCCCceEE
Q psy14886 468 INDVGPGPESEVVT 481 (505)
Q Consensus 468 ~n~~G~g~~s~~~~ 481 (505)
+|.+|.|.+|+...
T Consensus 84 ~n~~g~G~~S~wS~ 97 (105)
T d2d9qb2 84 IRWPLPGHWSDWSP 97 (105)
T ss_dssp EECSSCCCCCCCCC
T ss_pred EeCCCCCCCcCCCC
Confidence 99999987666543
|
| >d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.49 E-value=1.3e-13 Score=99.55 Aligned_cols=97 Identities=29% Similarity=0.517 Sum_probs=75.8
Q ss_pred EcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeE-EeeeccccceeeeecCceeeEEeeeccC
Q psy14886 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF-NVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 275 v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
|+++|.+|..+.+. ...+++.|+|+++.+++.++.+|.|+|+......|. ....... ....+.+.+ |.|
T Consensus 2 V~dvP~~P~~~~v~-~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-L~p 71 (100)
T d1cfba1 2 VQDVPNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP--------NTDSSFVVQ-MSP 71 (100)
T ss_dssp CCCCCCCCEEEEEE-ECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEE--------TTCSEEEEE-CCS
T ss_pred cccCCCcCcCcEEE-EcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeecC--------CceEEEEec-CCC
Confidence 57789999998875 567899999999988889999999999987665443 3222211 334566666 999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNT 381 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t 381 (505)
++.|.|||+|.|..|.|.+|.++..+.|
T Consensus 72 ~t~Y~frV~A~n~~G~g~~S~~s~~vtT 99 (100)
T d1cfba1 72 WANYTFRVIAFNKIGASPPSAHSDSCTT 99 (100)
T ss_dssp SEEEEEEEEEEETTEECCCCCCCCCEEE
T ss_pred CCEEEEEEEEEeCCcCCCCcCCCcCEEe
Confidence 9999999999999999999887644443
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=2.1e-14 Score=103.73 Aligned_cols=92 Identities=27% Similarity=0.501 Sum_probs=72.4
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC----cEEE-eeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----RRKI-FENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~----~~~~-~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
||.+...+...+..+..|+++.|.|.+.|.|.|.+.|+++|..+.... .... ...+.|.|.++..+|+|.|+|.|
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence 455554443445567889999999999999999999999999886432 1112 12346999999999999999999
Q ss_pred EcCCCceeeeEEEEEEe
Q psy14886 162 TNVHGMDESKGRLIVLH 178 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~ 178 (505)
.|..|.....+.|.|..
T Consensus 83 ~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 83 ENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCEEEEEEEEEEEE
Confidence 99999998888888854
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=1.6e-13 Score=99.74 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCCceeeee----ccccccEEEEEEeCCcc--ccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 387 YQAPSRIGGG----GGKIGDLSISWEPLPRE--KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 387 ~~~P~~~~~~----~~~~~~v~l~W~~~~~~--~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
|.||.++++. ....++|.|+|++|... +.++.++.|.|+|+..+...|...... ..+.+.|.+|.|++.
T Consensus 3 P~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~-----~~~~~~i~~L~p~t~ 77 (103)
T d1f6fb2 3 PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG-----HQTQFKVFDLYPGQK 77 (103)
T ss_dssp CCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEE-----TCSEEEECCCCTTCE
T ss_pred CCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeeccc-----ceeEEEeCCCCcceE
Confidence 4688888874 44567899999996443 345578899999999998888755433 235789999999999
Q ss_pred EEEEEEEecCCCC-CCCCceEEEee
Q psy14886 461 YEVKVQAINDVGP-GPESEVVTIWH 484 (505)
Q Consensus 461 Y~~~v~a~n~~G~-g~~s~~~~~~t 484 (505)
|.|||+|.|..|. |++|+.+.+.+
T Consensus 78 Y~~rVra~~~~G~wS~wS~~~~~~~ 102 (103)
T d1f6fb2 78 YLVQTRCKPDHGYWSRWSQESSVEM 102 (103)
T ss_dssp EEEEEEEEESSSCCCCCCCCEEEEC
T ss_pred EEEEEEEEeCCCCCCCCcCceeeEC
Confidence 9999999999997 99998887655
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=5.7e-14 Score=99.30 Aligned_cols=78 Identities=18% Similarity=0.387 Sum_probs=64.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+.+|+++.|.|.+.|.|.+.++|+|++..+... ...++.. .+++|.|.+++ .+|+|.|+|.|.|..+......
T Consensus 13 v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~-----~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~n~~~~~~~~~ 86 (92)
T d1epfa2 13 FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK-----KDVRFIVLSNNYLQIRGIK-KTDEGTYRCEGRILARGEINFK 86 (92)
T ss_dssp CCTTSCEEECCEEECSSCCEEEEEETTEEGGGG-----CCTTEEECTTSCEEETTCC-GGGCEEEEEEEEEGGGTEEEEE
T ss_pred EeCCCcEEEEEEEeecCCCeEEEEEcCcccccc-----cceeeeeeeeeeEEECCCC-HHhCEEEEEEEEECcCCEEEEE
Confidence 579999999999999999999999999988754 2334443 45689999999 9999999999999887766666
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.+.|.
T Consensus 87 ~i~Vi 91 (92)
T d1epfa2 87 DIQVI 91 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.4e-14 Score=103.65 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=72.1
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
..+|++|.++.+.. ..++|.|.|++ +.+.+|+|++|+|+|+..+...+. ..... ..+.+.|.+|.|++.|.|
T Consensus 18 ~~vP~~P~~~~~~~-~~~si~v~W~~--p~~~~g~i~~Y~i~~~~~~~~~~~-~~~~~----~~~~~~i~~L~p~t~Y~~ 89 (113)
T d1x5ia1 18 TRVPEVPSSLHVRP-LVTSIVVSWTP--PENQNIVVRGYAIGYGIGSPHAQT-IKVDY----KQRYYTIENLDPSSHYVI 89 (113)
T ss_dssp SSCCCSCSEEEEEE-ETTEEEEEEEC--CSCTTBCCCEEEEEECSSCGGGEE-EECCT----TCCEEEECSCCSSCEECC
T ss_pred CCCCCCCEeeeeee-CCCEEEEEEEc--cccCCccEEEEEEEeeecccccee-eeeeC----CccEEEEeccccCcEEEE
Confidence 34567999999864 46799999997 566788999999999887644333 32222 346789999999999999
Q ss_pred EEEEecCCCCCCCCceEEEeecc
Q psy14886 464 KVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+|+|+|.+|.|+++.. .+.|.|
T Consensus 90 ~V~A~n~~G~g~~~~~-~~~T~P 111 (113)
T d1x5ia1 90 TLKAFNNVGEGIPLYE-SAVTRP 111 (113)
T ss_dssp EEEEECSSCBCCCCCC-CEECCC
T ss_pred EEEEECCCcCCCCeee-EEEeCC
Confidence 9999999999987653 344444
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.48 E-value=4.9e-14 Score=101.17 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=73.6
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe--eCC--CEEEcCCCCCCCEEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG--NLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~--~~~--~l~i~~v~~~d~G~y~C~~~ 162 (505)
+|.|...+ .+..+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.+.... .++ .|.|.++...|.|.|+|.|.
T Consensus 4 aP~f~~~~--~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 81 (98)
T d1g1ca_ 4 APKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI 81 (98)
T ss_dssp EEEEEECC--CCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCeEecCC--CcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence 34454444 3467899999999999999999999999999999876664443 223 59999999999999999999
Q ss_pred cCCCceeeeEEEEEE
Q psy14886 163 NVHGMDESKGRLIVL 177 (505)
Q Consensus 163 ~~~g~~~~~~~l~v~ 177 (505)
|..|.....+.|.|.
T Consensus 82 N~~G~~~~~~~L~V~ 96 (98)
T d1g1ca_ 82 NIAGETSSHAFLLVQ 96 (98)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCcEEEEEEEEEEE
Confidence 999999888888885
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=8.2e-14 Score=101.60 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=67.6
Q ss_pred CceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 390 PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 390 P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
|..+.+.....++|.|+|++ +.+.++.+++|.|+|+... ...|....... . ..+.+.|.+|.|++.|.|||+|+
T Consensus 11 P~~p~~~~~~~~~i~v~W~p--p~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~-~--~~~~~~l~~L~p~t~Y~frVra~ 85 (106)
T d1cd9b2 11 DIGPDVVSHQPGCLWLSWKP--WKPSEYMEQECELRYQPQLKGANWTLVFHLP-S--SKDQFELCGLHQAPVYTLQMRCI 85 (106)
T ss_dssp CC-------CCSCEEEEEEC--CGGGTTSCEEEEEEEEESSTTCCCEEEEEEE-S--CEEEEEECCCCSCSCEEEEEEEE
T ss_pred CCCCeEecCCCCEEEEEEcC--cccCCccceEEEEEEeeccccccceeeeccc-C--CceEEEEeccCCCeEEEEEEEEE
Confidence 44455666778999999998 5677888999999999754 66788655433 2 34678899999999999999999
Q ss_pred cCCCCCCCCceEEEeec
Q psy14886 469 NDVGPGPESEVVTIWHD 485 (505)
Q Consensus 469 n~~G~g~~s~~~~~~t~ 485 (505)
|..|.|.+|+.....+.
T Consensus 86 ~~~g~g~wS~wS~~~~~ 102 (106)
T d1cd9b2 86 RSSLPGFWSPWSPGLQL 102 (106)
T ss_dssp ESSSCCCCCCCCCCEEE
T ss_pred eCCCCCCCcCCCCCeEe
Confidence 99999888877665443
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.48 E-value=7e-15 Score=104.00 Aligned_cols=78 Identities=17% Similarity=0.344 Sum_probs=64.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|+++.|.|.+.|.|.+.+.|++||.++... ...++.. ..++|.|.+++ .+|+|.|+|.|.|..|.....
T Consensus 11 v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~ 84 (91)
T d1tnna_ 11 VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-----ARHQVTTTKYKSTFEISSVQ-ASDEGNYSVVVENSEGKQEAE 84 (91)
T ss_dssp CSSSSCCCEEEECCCSSCCCCEEESSSSTTCSS-----SSCEEEECSSEEEEECSSCC-SCCCEEEEEECBCSSCBCCEE
T ss_pred EeCCCcEEEEEEEEEEeCCeEEEEEeecccccc-----cceeeeeecceeEEeecCCC-HHHCEEEEEEEEECCCEEEEE
Confidence 578999999999999999999999999988742 1122222 24689999999 999999999999999998888
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 85 ~~l~V~ 90 (91)
T d1tnna_ 85 FTLTIQ 90 (91)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 888775
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1e-13 Score=100.43 Aligned_cols=95 Identities=13% Similarity=-0.039 Sum_probs=64.2
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccc-cCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREK-QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
|.+|.++.+.....+++.|.|.+|.... .....+.|.|+|+..+...|..... .........+.+.+|.|++.|.|||
T Consensus 2 P~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~rV 80 (101)
T d1iarb2 2 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYN-VTYLEPSLRIAASTLKSGISYRARV 80 (101)
T ss_dssp CCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEE-ECSSCCEEEECC-----CCCEEEEE
T ss_pred cccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeee-eccCccceEEEECCCCCCCEEEEEE
Confidence 4689999999999999999999843222 1223457999999988666654332 2233355788999999999999999
Q ss_pred EEecCCCCCCCCceEEE
Q psy14886 466 QAINDVGPGPESEVVTI 482 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~ 482 (505)
+|.|..|.|++|+....
T Consensus 81 rA~~~~g~g~wSewS~~ 97 (101)
T d1iarb2 81 RAWAQAYNTTWSEWSPS 97 (101)
T ss_dssp EEECGGGTCCCCCCCCC
T ss_pred EEEcCCCCCCCcCCCCC
Confidence 99999999998887543
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.3e-13 Score=96.80 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=65.8
Q ss_pred CCceeeeeccc--cccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 389 APSRIGGGGGK--IGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 389 ~P~~~~~~~~~--~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+|.++.+.... .+++.|+|++|. .+.|.+|+|+|+..+ ...|....+.. ....+.|.+|.|++.|.|+|
T Consensus 2 aP~~~~vt~~~~~~~s~~vsW~~P~----~~~i~~Y~i~y~~~~~~~~~~~~~v~~----~~~~~~l~gL~P~t~Y~v~v 73 (93)
T d1owwa_ 2 GPVEVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATIPG----HLNSYTIKGLKPGVVYEGQL 73 (93)
T ss_dssp CCCEEECCCCSSCTTCEEEEEECCS----SSCEEEEEEEEEETTCSSCCEEEEECS----SCCEEEECSCCSSEEEEEEE
T ss_pred cCcccEEEEccCCCCEEEEEeeccc----ccceeEEEEEEeeccccceeeeeccCC----CccEEEECCcccCcEEEEEE
Confidence 46666665443 479999999842 357999999999976 44455444333 34678999999999999999
Q ss_pred EEecCCCCCCCCceEEEee
Q psy14886 466 QAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~t 484 (505)
.|+|..|+|+.+. ..+.|
T Consensus 74 ~av~~~G~s~~~~-~~~tT 91 (93)
T d1owwa_ 74 ISIQQYGHQEVTR-FDFTT 91 (93)
T ss_dssp EEEESSSCEEEEE-EEEEE
T ss_pred EEEeCCCccCcEE-EEEEe
Confidence 9999999999885 44444
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.47 E-value=3.2e-14 Score=100.52 Aligned_cols=81 Identities=23% Similarity=0.477 Sum_probs=70.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.+..+... ..|.|.++...|+|.|+|.|.|..|.....+.
T Consensus 7 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 86 (91)
T d1tnna_ 7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT 86 (91)
T ss_dssp CCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEE
T ss_pred cCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEE
Confidence 457899999999999999999999999999998877666554433 36999999999999999999999999888888
Q ss_pred EEEE
Q psy14886 174 LIVL 177 (505)
Q Consensus 174 l~v~ 177 (505)
|.|.
T Consensus 87 l~V~ 90 (91)
T d1tnna_ 87 LTIQ 90 (91)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8763
|
| >d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=9.4e-14 Score=103.40 Aligned_cols=105 Identities=30% Similarity=0.427 Sum_probs=82.9
Q ss_pred EEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeec
Q psy14886 273 VIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVL 351 (505)
Q Consensus 273 l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L 351 (505)
+.+...|.+|.++.+..+..++|.|+|+++.+++.++.+|.|+++.... ..|........ ...+.+.+ |
T Consensus 10 ~~~~~~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~---------~~~~~v~~-L 79 (117)
T d1uema_ 10 YDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK---------TTLYTVRG-L 79 (117)
T ss_dssp CCSCCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEEC---------SSEEEECS-C
T ss_pred ceeCccCcCCCCCEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeEEeccccc---------cccceECC-C
Confidence 3456789999999999999999999999988888899999999876653 45666543322 23445555 9
Q ss_pred cCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCC
Q psy14886 352 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387 (505)
Q Consensus 352 ~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~ 387 (505)
.|++.|.|||+|.|..|.|.+|..+..++|.+..|.
T Consensus 80 ~p~t~Y~frV~A~N~~G~s~~S~~s~~v~t~~~~Ps 115 (117)
T d1uema_ 80 RPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPS 115 (117)
T ss_dssp CTTCEEEEEEEEEETTEEEEECCCCCCEECCCSSCC
T ss_pred CCCCEEEEEEEEEeCCcCCCCcCCCcCEEeCCCCcC
Confidence 999999999999999999998887656777766653
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=5.7e-16 Score=112.35 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=76.7
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
+.|+..|.++++...+.++|.|+|++ +.+.+|.|++|+|+|+..+...+.... ..........+.|.+|.|++ |.|
T Consensus 2 a~~~d~P~~v~~~~~~~~sv~l~W~p--P~~~ng~i~~Y~v~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~t-Y~~ 77 (102)
T d2dtge1 2 AKADDIVGPVTHEIFENNVVHLMWQE--PKEPNGLIVLYEVSYRRYGDEELHLCD-TRKHFALERGCRLRGLSPGN-YSV 77 (102)
T ss_dssp CCCCCCCCCCCCCSSSSSCCCCCCCC--CCSCSSCEEEECCCCBSSSBCCCCCCC-CSSSCCCTTCCCCCSCCSSE-ECC
T ss_pred CCCCCCCCCCEEEEECCCEEEEEEEe--CCCCcceEEEeeeEEEecCCCCceeee-eeecccceEEEEEeccceee-EEE
Confidence 45667788888888889999999998 567789999999999987744333221 11222234567889999975 999
Q ss_pred EEEEecCCCCCCCCceEEEeec
Q psy14886 464 KVQAINDVGPGPESEVVTIWHD 485 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~~t~ 485 (505)
+|+|.|.+|.|++|+.+.+.+.
T Consensus 78 rV~A~n~~G~g~~S~~v~f~~~ 99 (102)
T d2dtge1 78 RIRATSLAGNGSWTEPTYFYVT 99 (102)
T ss_dssp CCCEEETTBCCCCCCCCEECCC
T ss_pred EEEEEcCCccCCCCCCEEEEcc
Confidence 9999999999999999998763
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=3.2e-13 Score=95.92 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++.+...+.++|.|+|+++ .+.+.+|.|+|+..++..+....... .+...+.+.|.+|.|++.|.|+|.|
T Consensus 2 daP~~l~v~~~~~~sv~v~W~~p-----~~~~~~y~v~y~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a 75 (92)
T d1tdqa2 2 DAPKNLRVGSRTATSLDLEWDNS-----EAEAQEYKVVYSTLAGEQYHEVLVPK-GIGPTTKTTLTDLVPGTEYGVGISA 75 (92)
T ss_dssp CCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEETTCCCCEEEEEEC-CSSSEEEEEECSCCTTCEEEEEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEEec-----CCcccceEEEEEEcCCCcceeeEEEe-cCCCeeEEEECCccCCCEEEEEEEE
Confidence 47899999999999999999983 35689999999998755555443322 2335578899999999999999999
Q ss_pred ecCCCCCCCCceEEEee
Q psy14886 468 INDVGPGPESEVVTIWH 484 (505)
Q Consensus 468 ~n~~G~g~~s~~~~~~t 484 (505)
+|..|.|+++. +.++|
T Consensus 76 ~~~~g~s~p~~-~~~~T 91 (92)
T d1tdqa2 76 VMNSKQSIPAT-MNART 91 (92)
T ss_dssp EETTEECCCEE-EEEEC
T ss_pred EeCCCEecCEE-EEEEC
Confidence 99999999874 44444
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.3e-14 Score=97.44 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=64.3
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
..+.+|++++|.|.+.|.|.|.+.|++++..+. ..+..|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~-------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~ 81 (84)
T d2nxyb2 9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 81 (84)
T ss_dssp SCEETTCCEEEEEECCTTCCCEEEEECTTCCEE-------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEEC
T ss_pred eEEECCCeEEEEEEeEcCCchheEEEeecccce-------eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEe
Confidence 457899999999999999999999999765432 2355799999999999999999999999998888888865
Q ss_pred CC
Q psy14886 179 GP 180 (505)
Q Consensus 179 ~p 180 (505)
.|
T Consensus 82 ~~ 83 (84)
T d2nxyb2 82 FQ 83 (84)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=2.1e-14 Score=102.06 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=63.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--CCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|+++.|.|.+.|.|.+.+.|+||+..+..+ ....+... ..+|.|.+++ .+|+|.|+|.|.|..|.....
T Consensus 14 v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~-----~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~N~~G~~~~~ 87 (93)
T d1wiua_ 14 IKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-----PELLVDAKSSTTSIFFPSAK-RADSGNYKLKVKNELGEDEAI 87 (93)
T ss_dssp ECSSBCCEEEEEEECCSSCEEEEECSSSSCBCS-----TTSEEEEETTEEEEECTTBC-GGGCEEEEEEEEETTEEEEEE
T ss_pred EeCCCeEEEEEEEEEecCCeEEEEeeeeeceee-----eeeeecccccceeecccccc-ccccEEEEEEEEECCCEEEEE
Confidence 468999999999999999999999999988743 11222222 2479999999 999999999999999998888
Q ss_pred EEEEE
Q psy14886 79 AQLRV 83 (505)
Q Consensus 79 ~~l~v 83 (505)
+.|.|
T Consensus 88 ~~l~V 92 (93)
T d1wiua_ 88 FEVIV 92 (93)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88776
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.2e-13 Score=99.39 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC-CcEE-EEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-EFQS-ETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
.||.++++...+.+++.|+|+++......+.+..|.++|+..+.. .+.. ..... ....+.|.+|.|++.|.|+|
T Consensus 4 ~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~rV 79 (104)
T d2b5ib2 4 MAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQ----KQEWICLETLTPDTQYEFQV 79 (104)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECS----CCCEEEECSCCTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCC----CcEEEEECCCCCCCEEEEEE
Confidence 589999999999999999999976666777888999999887632 2221 12111 34678899999999999999
Q ss_pred EEecCCCC----CCCCceEEEeecc
Q psy14886 466 QAINDVGP----GPESEVVTIWHDP 486 (505)
Q Consensus 466 ~a~n~~G~----g~~s~~~~~~t~p 486 (505)
+|.|..|. |++|+.+.+.|.|
T Consensus 80 ra~~~~g~~g~wS~wS~~v~~~T~P 104 (104)
T d2b5ib2 80 RVKPLQGEFTTWSPWSQPLAFRTKP 104 (104)
T ss_dssp EEEESCCSSCCCCCCCCCEEEECCC
T ss_pred EEEECCCCCCCCCCCcCCEEEECCC
Confidence 99999985 5677778888876
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.45 E-value=1e-13 Score=99.09 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=62.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.|.|.+.+.|+|+|.++... ...++.. ...+|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 15 ~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~-----~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~ 88 (97)
T d1biha3 15 AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN-----PEDRITRHNRTSGKRLLFKTTL-PEDEGVYTCEVDNGVGKPQ 88 (97)
T ss_dssp EETTSCEEEEEEEECSSCCCCEEEETTEECCCC-----TTSSEESCSSSTTSEEEESSCC-GGGCEEEEEEECCSSSSCE
T ss_pred EecCCeEEEEEEEEEecCCEEEEEEeeeecccc-----ceeeeeeeeecCCCEEEEEecc-ccccEEEEEEEEECCCcEE
Confidence 358999999999999999999999999998743 1222222 24689999999 9999999999999998765
Q ss_pred e-eEEEEEE
Q psy14886 77 S-SAQLRVL 84 (505)
Q Consensus 77 ~-~~~l~v~ 84 (505)
+ ++.|.|.
T Consensus 89 s~s~~L~Vl 97 (97)
T d1biha3 89 KHSLKLTVV 97 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEC
Confidence 4 6777764
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.45 E-value=5.4e-14 Score=99.25 Aligned_cols=87 Identities=33% Similarity=0.530 Sum_probs=68.8
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+|.+.... +....+.+|+++.|.|.+.|.|.+.+.|++++..... .....++.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~P~i~~~~-p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T d1cs6a3 4 APSIKAKF-PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---KWLSSEPLLHIQNVDFEDEGTYECEAENIKG 79 (91)
T ss_dssp EEEEEECC-CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC---CCSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CCeEEeeC-CCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce---EeeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence 34444332 3567789999999999999999999999997654322 1123456799999999999999999999999
Q ss_pred ceeeeEEEEEE
Q psy14886 167 MDESKGRLIVL 177 (505)
Q Consensus 167 ~~~~~~~l~v~ 177 (505)
.....+.|.|.
T Consensus 80 ~~~~~~~l~V~ 90 (91)
T d1cs6a3 80 RDTYQGRIIIH 90 (91)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 98888888874
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.45 E-value=2.7e-13 Score=95.00 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
++|.++++...+.+++.|.|+++ .+.+.+|.|+|+..+...|....... ....+.|.+|.|++.|.|+|.|
T Consensus 2 ~~P~~l~v~~v~~~s~~l~W~~~-----~~~~~~Y~i~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~a 72 (88)
T d1qr4a2 2 GSPKGISFSDITENSATVSWTPP-----RSRVDSYRVSYVPITGGTPNVVTVDG----SKTRTKLVKLVPGVDYNVNIIS 72 (88)
T ss_dssp CCCSCEEEESCCSSCEEEEECCC-----SSCCSEEEEEEEETTCCCCEEEEEET----TCCEEEECSCCSSCEEEEEEEE
T ss_pred cCCcceEEEEecCCEEEEEEEcc-----cEeeceEEEEEEeccCCceEEEEecC----CccEEEECCCCCCCEEEEEEEE
Confidence 57899999999999999999983 25799999999999877777555433 3467899999999999999999
Q ss_pred ecCCCCCCCC
Q psy14886 468 INDVGPGPES 477 (505)
Q Consensus 468 ~n~~G~g~~s 477 (505)
+|..|.|++.
T Consensus 73 ~~~~g~s~p~ 82 (88)
T d1qr4a2 73 VKGFEESEPI 82 (88)
T ss_dssp EETTEECCCE
T ss_pred EeCCCCcCCE
Confidence 9999998775
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.6e-14 Score=99.45 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|+++.|.|.+.|.|.+.++|++++..+... ........++|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 14 ~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~~~~~~L~I~~v~-~~d~G~Y~C~a~N~~g~~~~~~~v 86 (90)
T d1vcaa2 14 QIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG------KVTNEGTTSTLTMNPVS-FGNEHSYLCTATCESRKLEKGIQV 86 (90)
T ss_dssp ETTSCEEEEEEEESCSSCEEEEEETTCCCCSS------EEEEETTEEEEEESSCC-GGGCSEEEEEEEETTEEEEEEEEE
T ss_pred ECCCEEEEEEeccCCCCceEEEEecCccceee------eeeeecCCcEEEEeccc-ccccceEEEEEEeCCCEEEEEEEE
Confidence 58999999999999999999999987765421 11111234689999999 999999999999999988888888
Q ss_pred EEE
Q psy14886 82 RVL 84 (505)
Q Consensus 82 ~v~ 84 (505)
.|.
T Consensus 87 ~V~ 89 (90)
T d1vcaa2 87 EIY 89 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.2e-13 Score=97.30 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|.++.+...+.+++.|+|+++ . ++.+.+|+|+|+..+...|....... ...+.+.|.+|.|++.|.|+|.|+
T Consensus 8 ~P~~l~v~~~t~~si~l~W~~p--~--~~~i~~Y~v~~~~~~~~~~~~~~~~~---~~~t~~~i~~L~p~t~Y~~~V~a~ 80 (95)
T d2fnba_ 8 QLTDLSFVDITDSSIGLRWTPL--N--SSTIIGYRITVVAAGEGIPIFEDFVD---SSVGYYTVTGLEPGIDYDISVITL 80 (95)
T ss_dssp CCTTCEEECCCSSCEEEECCCC--C--CSSCCEEEEEEEEETSCCEEEEEECC---SSCSEEEECCCCTTSEEEEEEEEE
T ss_pred cCCCeEEEEEcCCEEEEEEEec--C--CceEEeEEEEEEEeeccceEEEEEeC---CCCeEEEEecccCCEEEEEEEEEE
Confidence 6889999999999999999983 2 35689999999998866655443322 234678999999999999999999
Q ss_pred cCCCCCCCCceE
Q psy14886 469 NDVGPGPESEVV 480 (505)
Q Consensus 469 n~~G~g~~s~~~ 480 (505)
|..|.|+++.+.
T Consensus 81 ~~~g~s~p~~~~ 92 (95)
T d2fnba_ 81 INGGESAPTTLT 92 (95)
T ss_dssp ETTEECCCCEEE
T ss_pred eCCcEeCCEEEE
Confidence 999999988544
|
| >d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.7e-13 Score=96.62 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=76.6
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
..|.+|.++.+...+.+++.|+|++|...++++.+|.|+|+..+...|..... ....+.+.+ |.+++.
T Consensus 9 ~vP~~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~~~~~~~-----------~~~~~~i~~-L~p~t~ 76 (103)
T d1x5ga1 9 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDV-----------SSHSYTING-LKKYTE 76 (103)
T ss_dssp SCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCCCCCEEE-----------CSSEEEECS-CCTTCE
T ss_pred CCcccCCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCCceeEEEec-----------cccEEecCC-CCCCCE
Confidence 35788999999999999999999998888889999999999887776655432 223455555 999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCCC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTPA 383 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~~ 383 (505)
|.|+|+|.|..|.|.+|... .++|++
T Consensus 77 Y~~~V~A~n~~G~g~~S~~v-~v~T~e 102 (103)
T d1x5ga1 77 YSFRVVAYNKHGPGVSTPDV-AVRTLS 102 (103)
T ss_dssp EEEEEEEECSSCCCCBCCCC-CEECCC
T ss_pred EEEEEEEEcCCcCcCCCCCE-EEEcCC
Confidence 99999999999999888764 566654
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.2e-13 Score=103.35 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=74.2
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
.|++|.++++...+.++|.|.|++ +.+.++.+..|.++|+..+...+........ .....+.+.+|.|++.|.|||
T Consensus 16 ~P~~P~~~~v~~~~~~sv~l~W~~--p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~frV 91 (127)
T d1ueya_ 16 VPNPPFDLELTDQLDKSVQLSWTP--GDDNNSPITKFIIEYEDAMHKPGLWHHQTEV--SGTQTTAQLNLSPYVNYSFRV 91 (127)
T ss_dssp SCCCCEEEEEECCSSSCEEEEEEC--CCCCSSCEEEEEEEEEBTTTCTTCEEEEEEE--ESSCCEEEECCCTTCEECCEE
T ss_pred cCcCCCCcEEEEecCCeEEEEEeC--CcccccceEeeeeeeccccccceeEEEEeec--CCceEEEECCCccCCEEEEEE
Confidence 346899999999999999999997 6788889999999999876333332222221 133567788999999999999
Q ss_pred EEecCCCCCCCCceEEEe
Q psy14886 466 QAINDVGPGPESEVVTIW 483 (505)
Q Consensus 466 ~a~n~~G~g~~s~~~~~~ 483 (505)
+|+|.+|.|++|+.+...
T Consensus 92 ~A~n~~G~s~~S~~s~~~ 109 (127)
T d1ueya_ 92 MAVNSIGKSLPSEASEQY 109 (127)
T ss_dssp EEEESSCBCCCCSCCCCE
T ss_pred EEEcCCcCcCCcCCcccE
Confidence 999999999999876543
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-13 Score=97.13 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=66.4
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
...+.+|+++.|.|.+.|.|.+.+.|++++..+...........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~ 89 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence 35567899999999999999999999998776554333333334579999999999999999999999999888888874
|
| >d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.1e-13 Score=102.50 Aligned_cols=112 Identities=29% Similarity=0.484 Sum_probs=89.8
Q ss_pred EEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCC--CeEEeeeccccceeeeecCceeeEEeeec
Q psy14886 274 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEHVIGKEVDRYTGRKEASIENVL 351 (505)
Q Consensus 274 ~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~L 351 (505)
.+.+.|.+|.++.+..+..++|.|+|+++.+.+.++..|.++|+..... .|....... ....+.+.+ |
T Consensus 12 ~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L 81 (127)
T d1ueya_ 12 PVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS---------GTQTTAQLN-L 81 (127)
T ss_dssp CCCCSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEE---------SSCCEEEEC-C
T ss_pred cccccCcCCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEEeecC---------CceEEEECC-C
Confidence 4567899999999999999999999999988888999999999877543 333322211 233455555 9
Q ss_pred cCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeee
Q psy14886 352 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 395 (505)
Q Consensus 352 ~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~ 395 (505)
.+++.|.|||+|.|..|.|.+|.....+.+.+..|..+|.++..
T Consensus 82 ~p~t~Y~frV~A~n~~G~s~~S~~s~~~~t~~~~P~~~P~~~p~ 125 (127)
T d1ueya_ 82 SPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS 125 (127)
T ss_dssp CTTCEECCEEEEEESSCBCCCCSCCCCEECCCSSCSSCSSCCCC
T ss_pred ccCCEEEEEEEEEcCCcCcCCcCCcccEEcCCCCCCCCCCCCCC
Confidence 99999999999999999999988876788889999899987654
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2e-13 Score=96.54 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=62.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|++++|.|.+.+.|.+.+.|+|++.++... ...++... ...|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 8 v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~-----~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~ 81 (91)
T d1rhfa1 8 VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-----DQLYIPVSEQHWIGFLSLKSVE-RSDAGRYWCQVEDGGETEI 81 (91)
T ss_dssp EETTCCEEEEEEEESCSSCCEEEEETTEECCSS-----EEEEEEEETTEEEEEEEESSCC-GGGCEEEEEEESSCTTCEE
T ss_pred EcCCCeEEEEEEEEecCCceEEEEEeecccccc-----eeeeeeecccCceeeEEECCCC-cccCEEEEEEEEECCCCEE
Confidence 468999999999999999999999999998732 11122222 2479999999 9999999999999998764
Q ss_pred e-eEEEEEE
Q psy14886 77 S-SAQLRVL 84 (505)
Q Consensus 77 ~-~~~l~v~ 84 (505)
+ .+.|.|.
T Consensus 82 S~~~~l~V~ 90 (91)
T d1rhfa1 82 SQPVWLTVE 90 (91)
T ss_dssp CCCEEEEEE
T ss_pred EEEEEEEEE
Confidence 4 5777764
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.8e-13 Score=95.03 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=67.7
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC-----CCEEEcCCCCCCCEEEEEEEEcCCCcee-
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATNVHGMDE- 169 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~~~~~~g~~~- 169 (505)
+.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+....+..+... ..|.|.+++.+|+|.|+|.|.|..|...
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S 82 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS 82 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence 3567899999999999999999999999999999876655443322 2599999999999999999999999754
Q ss_pred eeEEEEEE
Q psy14886 170 SKGRLIVL 177 (505)
Q Consensus 170 ~~~~l~v~ 177 (505)
..+.|.|.
T Consensus 83 ~~~~l~V~ 90 (91)
T d1rhfa1 83 QPVWLTVE 90 (91)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEE
Confidence 45777763
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=8e-14 Score=97.55 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=60.9
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+++|+++.|.|.+. +.|.+.|+|++++.++.. .+.....++|.|.+++ .+|+|.|+|.|.|..+....++
T Consensus 15 ~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~--------~~~~~~~~~L~i~~v~-~~D~G~Y~C~Asn~~g~~~~s~ 85 (90)
T d1gsma1 15 VALGASRQLTCRLACADRGASVQWRGLDTSLGA--------VQSDTGRSVLTVRNAS-LSAAGTRVCVGSCGGRTFQHTV 85 (90)
T ss_dssp EETTCCEEEEEEECCSSTTCEEEEESSTTTTCC--------EEEESSEEEEEECSCC-GGGCEEEEEEEEETTEEEEEEE
T ss_pred EEeCCcEEEEEEecCCCCccEEEEEEeeeeeee--------eeccCceeeEEcCccC-hhhCCcEEEEEEeCCCcEEEEE
Confidence 36899999999985 788899999998766531 1222234689999999 9999999999999998888888
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.|.|+
T Consensus 86 ~l~Vy 90 (90)
T d1gsma1 86 QLLVY 90 (90)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88774
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.2e-13 Score=93.38 Aligned_cols=82 Identities=20% Similarity=0.043 Sum_probs=66.8
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCc-EEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF-QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
.+|.++.+...+.+++.|.|+++ .+++.+|.|+|+..+...+ ....+.. ..+.+.|.+|.|++.|.|+|.
T Consensus 3 d~P~~l~v~~~s~~s~~l~W~~p-----~~~~~~y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~ 73 (90)
T d1tena_ 3 DAPSQIEVKDVTDTTALITWFKP-----LAEIDGIELTYGIKDVPGDRTTIDLTE----DENQYSIGNLKPDTEYEVSLI 73 (90)
T ss_dssp CCCEEEEEESCCSSCEEEEEECC-----SSCCSEEEEEEEETTCTTCCEEEEEET----TCCEEEECSCCTTCEEEEEEE
T ss_pred CCCCCcEEEEecCCEEEEEEEeC-----ceEeccEEEEEEEcCCCceeEEEEecC----CcceeeEeeecCCCEEEEEEE
Confidence 57899999999999999999973 2568999999998874433 3333222 346789999999999999999
Q ss_pred EecCCCCCCCCc
Q psy14886 467 AINDVGPGPESE 478 (505)
Q Consensus 467 a~n~~G~g~~s~ 478 (505)
|+|..|.|+++.
T Consensus 74 a~~~~g~s~~~~ 85 (90)
T d1tena_ 74 SRRGDMSSNPAK 85 (90)
T ss_dssp EEETTEECCCEE
T ss_pred EEeCCCEeCCEE
Confidence 999999998874
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.5e-14 Score=98.29 Aligned_cols=81 Identities=26% Similarity=0.322 Sum_probs=64.9
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|.+.....+....+.+|+.+.|.|.+.|.|.|++.|+++|..+.... .+.+++.+|+|.|+|.|.|..|.
T Consensus 3 P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~----------~~~~v~~~d~G~Y~C~A~N~~G~ 72 (84)
T d2oz4a3 3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------ESVTVTRDLEGTYLCRARSTQGE 72 (84)
T ss_dssp EECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT----------SCEECCGGGCEEEEEEEEETTEE
T ss_pred CceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee----------eeeccccCCCCEEEEEEEcCCCE
Confidence 44433333456789999999999999999999999999988765432 23467789999999999999999
Q ss_pred eeeeEEEEEEe
Q psy14886 168 DESKGRLIVLH 178 (505)
Q Consensus 168 ~~~~~~l~v~~ 178 (505)
.+..+.|.|..
T Consensus 73 ~~~~~~l~V~~ 83 (84)
T d2oz4a3 73 VTREVTVNVLS 83 (84)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEC
Confidence 88888888853
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.42 E-value=3.2e-13 Score=96.50 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=66.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR----KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
...+.+|+++.|.|.+.|.|.|.+.|++||..+..+.+. ......+|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 346789999999999999999999999999998653321 1223457999999999999999999999999888888
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 94 l~V 96 (97)
T d3dara1 94 LDV 96 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=99.41 E-value=6.7e-13 Score=92.76 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=66.6
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+|.+|.++.+...+.++|.|+|+++ .+ ++.+.+|.|.+.. ..... ...+.+.+.+|.|++.|.|+|
T Consensus 3 AP~~P~~l~~~~~~~~sv~lsW~~p--~~-~~~i~~Y~i~~~~-----~~~~~------~~~t~~~~~~L~p~t~Y~~~V 68 (88)
T d1k85a_ 3 APTAPTNLASTAQTTSSITLSWTAS--TD-NVGVTGYDVYNGT-----ALATT------VTGTTATISGLAADTSYTFTV 68 (88)
T ss_dssp SCCCCEEEEEEEECSSCEEEEEECC--SC-CSSEEEEEEEESS-----SEEEE------ESSSEEEECCCCSSCEEEEEE
T ss_pred CcCCCCCcEEEEecCCEEEEEEeCC--CC-CCCEEEEEEEccc-----eEEEe------cCCCEEEECCCCCCCEEEEEE
Confidence 3468999999988999999999983 22 3458899997521 11111 123578999999999999999
Q ss_pred EEecCCC-CCCCCceEEEee
Q psy14886 466 QAINDVG-PGPESEVVTIWH 484 (505)
Q Consensus 466 ~a~n~~G-~g~~s~~~~~~t 484 (505)
.|+|..| .|++|+.+.+.|
T Consensus 69 ~A~n~~G~~s~~S~~v~vtT 88 (88)
T d1k85a_ 69 KAKDAAGNVSAASNAVSVKT 88 (88)
T ss_dssp EEEETTTEECCCCCCEEEEC
T ss_pred EEEECCCCcCCCCcCEEEEC
Confidence 9999999 699999888765
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6e-13 Score=91.85 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=56.9
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-e
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~ 78 (505)
|.+|+++.|.|.+.|.|.+ +|+|+|||..+... ..+.+.|.... .+|+|.|+|.|.|..|...+ .
T Consensus 13 v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~------------~~~~~~l~~~~-~~d~G~Y~C~A~N~~G~~~S~~ 79 (85)
T d1rhfa2 13 VPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP------------APSPSVLNVTG-VTQSTMFSCEAHNLKGLASSRT 79 (85)
T ss_dssp ECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS------------EESSEEEEECC-CSSCEEEEEEEEETTEEEECCC
T ss_pred EcCCCEEEEEEEEecCCcceEEEEEECCEECCCC------------CCcceEEecCC-ccccEEEEEEEEcCCCcEEEEE
Confidence 4689999999999999876 89999999998732 12456677778 88999999999999986554 5
Q ss_pred EEEEE
Q psy14886 79 AQLRV 83 (505)
Q Consensus 79 ~~l~v 83 (505)
+.|.|
T Consensus 80 ~~v~V 84 (85)
T d1rhfa2 80 ATVHL 84 (85)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66665
|
| >d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-13 Score=100.11 Aligned_cols=96 Identities=22% Similarity=0.389 Sum_probs=72.3
Q ss_pred EEEEcCCCCCCCceEEE--EEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEee
Q psy14886 272 TVIVEGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 272 ~l~v~~~p~~p~~~~~~--~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
.|.|+..|.+|..+.+. ....++|.|+|.+|.+++.+|.+|.|+|+..+. .|........ .....+.+.+
T Consensus 4 ~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~-~~~~~~~~~~-------~~~~~~~i~~ 75 (108)
T d1wf5a1 4 HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNA-PWTVLLASVD-------PKATSVTVKG 75 (108)
T ss_dssp CSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTC-CCEEEESSCC-------TTCCEEEEES
T ss_pred ccEEecCCCCCCCCEEEEEeccCCEEEEEEECCCCCCCccEEEEEEEEeccC-CceEEeeeec-------CCccEEEECC
Confidence 45677788888776543 456789999999998888899999999997754 3444333222 1223455555
Q ss_pred eccCCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
|.+++.|.|||+|.|..|.|.+|...
T Consensus 76 -L~p~t~Y~frV~A~N~~G~s~~S~~~ 101 (108)
T d1wf5a1 76 -LVPARSYQFRLCAVNDVGKGQFSKDT 101 (108)
T ss_dssp -CCTTCEEEEEEEEEESSCEEEECCCC
T ss_pred -CCCCCEEEEEEEEEcCCcCCCCcCCc
Confidence 99999999999999999999888775
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.41 E-value=3.2e-13 Score=94.27 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=59.5
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-e
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~ 78 (505)
|.+|+.++|.|.+.+ .|.+.+.|+|||..+. ....++.|.|.+++ .+|+|.|+|.|.|..+...+ .
T Consensus 14 v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~-----------~~~~~~~l~I~~v~-~~dsG~Y~C~a~n~~~~~~S~~ 81 (89)
T d1fnla2 14 FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK-----------YFHHNSDFHIPKAT-LKDSGSYFCRGLVGSKNVSSET 81 (89)
T ss_dssp EETTCCEEEEEEECTTCCCEEEEEEETTEEEE-----------EEEECCCEEESSCC-GGGCEEEEEEEEETTEEEECCC
T ss_pred EccCCeEEEEEEecCCCCCcEEEEEEcccccc-----------eeccccccEECccc-eeccceEEEEEEeCCCCeEEee
Confidence 469999999999874 5677999999998765 22346789999999 99999999999998876554 5
Q ss_pred EEEEEEe
Q psy14886 79 AQLRVLT 85 (505)
Q Consensus 79 ~~l~v~~ 85 (505)
+.|.|.+
T Consensus 82 v~itV~E 88 (89)
T d1fnla2 82 VNITITQ 88 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 7777764
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=4.7e-13 Score=94.48 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=66.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC--CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
....+.+|+++.|.|.+.|.|.|.+.|++++..+... .+.....+++|.|.+++..|+|.|+|.|.|..+.......+
T Consensus 9 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i 88 (92)
T d1epfa2 9 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88 (92)
T ss_dssp SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEE
T ss_pred CCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEE
Confidence 4567899999999999999999999999999988653 34555566789999999999999999999987766555555
Q ss_pred EE
Q psy14886 175 IV 176 (505)
Q Consensus 175 ~v 176 (505)
.|
T Consensus 89 ~V 90 (92)
T d1epfa2 89 QV 90 (92)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.5e-13 Score=99.13 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=73.5
Q ss_pred CCCCceeeee--ccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 387 YQAPSRIGGG--GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 387 ~~~P~~~~~~--~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
|.||.++.+. ....++|.|.|++ +.+.++.+++|.|+|+..++..|....... .....+.+.|.+|.+++.|.|+
T Consensus 5 P~pP~~~~v~~~~~~~~si~v~W~~--p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~t~Y~~~ 81 (115)
T d1bqua2 5 PNPPHNLSVINSEELSSILKLTWTN--PSIKSVIILKYNIQYRTKDASTWSQIPPED-TASTRSSFTVQDLKPFTEYVFR 81 (115)
T ss_dssp CCCCEEEEEECC--CCSCEEEEEEC--CGGGGTSCEEEEEEEEETTCSSCEECCGGG-GCSCCSEEEECSCCSSEEEEEE
T ss_pred CCCCCCCEEEEeccCCCEEEEEEee--ccccccceeeeeeeeeeeeeeeeecccccc-ccccccEEeeCCCccCcEEEEE
Confidence 3578888775 4567889999998 567788999999999998877776543332 2234468889999999999999
Q ss_pred EEEecCCCCCCCC---ceEEEeec
Q psy14886 465 VQAINDVGPGPES---EVVTIWHD 485 (505)
Q Consensus 465 v~a~n~~G~g~~s---~~~~~~t~ 485 (505)
|+|+|..|.|.+| +.+.+.|.
T Consensus 82 V~a~~~~G~g~~S~~S~~~~~~T~ 105 (115)
T d1bqua2 82 IRCMKEDGKGYWSDWSEEASGITY 105 (115)
T ss_dssp EEEEETTSCSCCCCCCCCEEEEEC
T ss_pred EEEEeCCCccCCcCCcCCEEEECC
Confidence 9999999998665 45556553
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.1e-13 Score=94.29 Aligned_cols=86 Identities=19% Similarity=0.143 Sum_probs=65.8
Q ss_pred CCCCCceeeeecccc-ccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 386 PYQAPSRIGGGGGKI-GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 386 p~~~P~~~~~~~~~~-~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
|..||.++++..... +.|.|.|+++ .++.+.+|+|+|+..++..+......... ..+.+.|.+|.|++.|.|+
T Consensus 1 P~~PP~~l~v~~~~~ts~i~v~W~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~v~ 74 (94)
T d1fnfa1 1 PLSPPTNLHLEANPDTGVLTVSWERS----TTPDITGYRITTTPTNGQQGNSLEEVVHA--DQSSCTFDNLSPGLEYNVS 74 (94)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECC----SCSSCCEEEEEEEETTTCSSCCEEEEECT--TCCEEECCCCCTTSCEEEE
T ss_pred CCCcCcCcEEEEecCCCEEEEEeeCC----CCCCeeEEEEEEEEecccCceEEEEEeCC--CccEEEECCCCCCCEEEEE
Confidence 557899999987654 5699999983 23348999999998875554433333323 3467999999999999999
Q ss_pred EEEecCCCCCCCC
Q psy14886 465 VQAINDVGPGPES 477 (505)
Q Consensus 465 v~a~n~~G~g~~s 477 (505)
|.|+|..|+|++.
T Consensus 75 V~a~~~~g~s~p~ 87 (94)
T d1fnfa1 75 VYTVKDDKESVPI 87 (94)
T ss_dssp EEEEETTEECCCE
T ss_pred EEEEcCCCEeCCE
Confidence 9999999988654
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=3.5e-13 Score=96.23 Aligned_cols=76 Identities=24% Similarity=0.444 Sum_probs=63.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS- 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~- 77 (505)
|.+|++++|.|.+.+ +.+.+.|+|++..+.. ..++.+ ..++|.|.+++ .+|+|.|+|.|.|..|...+
T Consensus 15 v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~-------~~~~~~~~~~~~L~I~~v~-~~d~G~Y~C~a~N~~g~~~S~ 85 (96)
T d1l6za2 15 VKELDSVTLTCLSND-IGANIQWLFNSQSLQL-------TERMTLSQNNSILRIDPIK-REDAGEYQCEISNPVSVRRSN 85 (96)
T ss_dssp ECTTSCEEEEECCCC-SSCEEEEEETTEECCC-------CTTEEEETTTTEEEECSCC-GGGCEEEEEEEESSSCCEECC
T ss_pred EeCCCeEEEEEccCC-CCCCEEEEEeeeeccc-------ccceeccCCceEEEEeccc-hhhceEEEEEEEeCCCCeEEE
Confidence 468999999999866 5689999999999973 344444 45689999999 99999999999999888765
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
.+.|.|..
T Consensus 86 ~~~L~V~~ 93 (96)
T d1l6za2 86 SIKLDIIF 93 (96)
T ss_dssp CCEEEECC
T ss_pred eEEEEEEc
Confidence 57888874
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1e-12 Score=93.71 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=68.5
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee-CCCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLI 175 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~-~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~ 175 (505)
+..+.+|++++|.|.+.+ +.+.+.|+++|..+....+..... .++|.|.++..+|.|.|+|.|.|..|...+ .+.|.
T Consensus 12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~ 90 (96)
T d1l6za2 12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 90 (96)
T ss_dssp CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEE
T ss_pred ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEE
Confidence 345889999999999876 457999999999998777766654 346999999999999999999999998754 48888
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 91 V~~~P 95 (96)
T d1l6za2 91 IIFDP 95 (96)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 87665
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.6e-13 Score=92.02 Aligned_cols=81 Identities=21% Similarity=0.463 Sum_probs=63.5
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
|.|...| .+..+.+|+++.|.|.+.|.|.| ++.|++||..+.... .+.+.|.....+|+|.|+|.|.|..|
T Consensus 2 P~f~~~P--~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------~~~~~l~~~~~~d~G~Y~C~A~N~~G 73 (85)
T d1rhfa2 2 PFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------PSPSVLNVTGVTQSTMFSCEAHNLKG 73 (85)
T ss_dssp CEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------ESSEEEEECCCSSCEEEEEEEEETTE
T ss_pred CcEEEeC--CcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------CcceEEecCCccccEEEEEEEEcCCC
Confidence 4455554 45778999999999999999987 999999999886532 24466667777899999999999999
Q ss_pred ceee-eEEEEE
Q psy14886 167 MDES-KGRLIV 176 (505)
Q Consensus 167 ~~~~-~~~l~v 176 (505)
...+ .+.|.|
T Consensus 74 ~~~S~~~~v~V 84 (85)
T d1rhfa2 74 LASSRTATVHL 84 (85)
T ss_dssp EEECCCEEEEE
T ss_pred cEEEEEEEEEE
Confidence 6644 466665
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.7e-13 Score=94.23 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++.+...+.+++.|+|+++ .+.+.+|.|.|+..++. +....... ..+.+.|.+|.|++.|.|+|.|
T Consensus 3 ~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~-~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~a 72 (93)
T d2cuma1 3 EAPRDLEAKEVTPRTALLTWTEP-----PVRPAGYLLSFHTPGGQ-TQEILLPG----GITSHQLLGLFPSTSYNARLQA 72 (93)
T ss_dssp CCCEEEEEESCCSSCEEEEEECC-----SSCCSEEEEEEECTTSC-EEEEEECS----SCSEEEECSCCTTCEEEEEEEE
T ss_pred CcCCCCEEEEeCCCEEEEEEEcc-----ccccccEEEEEEccccc-cEEEEECC----CccEEEEeCccCCCEEEEEEEE
Confidence 47899999999999999999983 25689999999987643 33333222 3457899999999999999999
Q ss_pred ecCCCCCCCCceEEEeecc
Q psy14886 468 INDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 468 ~n~~G~g~~s~~~~~~t~p 486 (505)
+|..|.|+++. ..+.|.+
T Consensus 73 ~~~~g~s~~~~-~~~tT~g 90 (93)
T d2cuma1 73 MWGQSLLPPVS-TSFTTGG 90 (93)
T ss_dssp EBTTBCCCCEE-EEEECCC
T ss_pred EeCCCCCCCEE-EEEEeCC
Confidence 99999999875 3455544
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.7e-13 Score=94.08 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=64.7
Q ss_pred CceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
.....+.+|+++.|.|.+. +.|.+.+.|++.+..+. ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l 87 (90)
T d1gsma1 10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG--AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 87 (90)
T ss_dssp CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC--CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee--eeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEE
Confidence 3557788999999999875 78889999999776553 22223334569999999999999999999999988888888
Q ss_pred EEE
Q psy14886 175 IVL 177 (505)
Q Consensus 175 ~v~ 177 (505)
.|+
T Consensus 88 ~Vy 90 (90)
T d1gsma1 88 LVY 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 873
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=5.3e-13 Score=93.89 Aligned_cols=78 Identities=29% Similarity=0.467 Sum_probs=66.3
Q ss_pred ceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....+.+|+++.|.|.+. +.|.+.+.|++++..+.... ....++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 87 (89)
T d1gl4b_ 10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87 (89)
T ss_dssp CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred CeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc--cEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence 456789999999999986 67888999999888765543 234577899999999999999999999999988888887
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 88 V 88 (89)
T d1gl4b_ 88 V 88 (89)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.3e-12 Score=92.61 Aligned_cols=90 Identities=24% Similarity=0.195 Sum_probs=72.5
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeE
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~ 358 (505)
|++|..+.+...+.+++.|+|++|.+.+.++..|.|+++......|...... ...+.+.+ |.+++.|.
T Consensus 1 P~~P~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-----------~~~~~i~~-L~p~t~Y~ 68 (93)
T d1x4xa1 1 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGP-----------GLSYEIKG-LSPATTYY 68 (93)
T ss_dssp CCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSCCEEEEES-----------CSEEEEES-CCSSCEEE
T ss_pred CcCCCCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCCcceEeecCC-----------ccEEEEcc-cceeeEEE
Confidence 5677788888999999999999998888899999999998776666554332 23455555 99999999
Q ss_pred EEEEEEcCCCcCCCCCCCCCccC
Q psy14886 359 FKVIAGNELGYGEPSSPSPQYNT 381 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~~~~~~~t 381 (505)
|+|+|.|..|.|++|... .+.|
T Consensus 69 ~~V~A~n~~G~s~~S~~~-~~~T 90 (93)
T d1x4xa1 69 CRVQALSVVGAGPFSEVV-ACVT 90 (93)
T ss_dssp EEEEEECSSCCCCBCCCE-EEEC
T ss_pred EEEEEEECCcCcCCCCcE-EEEe
Confidence 999999999999988754 4444
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.2e-14 Score=107.67 Aligned_cols=96 Identities=10% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC--------------cEEE------EeeecCceeeE
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE--------------FQSE------TLKEYGNVGIA 448 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~--------------~~~~------~~~~~~~~~~~ 448 (505)
+|.++++...++++|.|+|++| ....++.|++|.|.|++.+... |... ..........+
T Consensus 4 ~plnl~~~~~sstsv~lsW~pP-~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
T d2dtge3 4 ELLKFSYIRTSFDKILLRWEPY-WPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP 82 (125)
T ss_dssp CBCCCSEEEECSSCEEEECCCC-CSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred CCEEEEEEEecCCEEEEEEeCC-CccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence 6789999999999999999984 4455688999999998865221 2111 11112233456
Q ss_pred EEEcCCccceeeEEEEEEEecCCCC-----CCCCceEEEeec
Q psy14886 449 VVRIPSEFYYTEYEVKVQAINDVGP-----GPESEVVTIWHD 485 (505)
Q Consensus 449 ~~~l~~L~p~~~Y~~~v~a~n~~G~-----g~~s~~~~~~t~ 485 (505)
.+.|.+|.|++.|.|+|+|+|.+|. |+.|+++.++|.
T Consensus 83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~ 124 (125)
T d2dtge3 83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD 124 (125)
T ss_dssp EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence 8899999999999999999999995 899999988875
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.5e-13 Score=96.96 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=71.0
Q ss_pred CCCCceeeeec------cccccEEEEEEeCCcc--ccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccce
Q psy14886 387 YQAPSRIGGGG------GKIGDLSISWEPLPRE--KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY 458 (505)
Q Consensus 387 ~~~P~~~~~~~------~~~~~v~l~W~~~~~~--~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 458 (505)
|.||.++.+.. ....+|.|+|++|... +.+..++.|.|+|+..+...|...... ..+.+.|.+|.++
T Consensus 1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~-----~~~~~~i~~L~~~ 75 (106)
T d1axib2 1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPI-----LTTSVPVYSLKVD 75 (106)
T ss_dssp CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCB-----SSSEEEEEEEETT
T ss_pred CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeec-----ccceEEECCCCCC
Confidence 46888887742 2345899999985443 233467899999999998888754422 2357889999999
Q ss_pred eeEEEEEEEecCCC--CCCCCceEEEeec
Q psy14886 459 TEYEVKVQAINDVG--PGPESEVVTIWHD 485 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G--~g~~s~~~~~~t~ 485 (505)
+.|.|||+|.|..| .|++|+.+...++
T Consensus 76 t~Y~frVRa~~~~~g~ws~wS~~v~v~~P 104 (106)
T d1axib2 76 KEYEVRVRSKQRNSGNYGEFSEVLYVTLP 104 (106)
T ss_dssp SCEEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEECC
Confidence 99999999998765 3899988776654
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.5e-13 Score=93.28 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=64.0
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+|.+...+ ..+.+.+|+++.|.|.+.+.|. ++|+|+|+|..+....+.....+++|.|.+++.+|+|.|+|.|.|..
T Consensus 6 ~P~~~~~~--~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T d1n26a1 6 CPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83 (93)
T ss_dssp CCCCCCCT--TEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred CCcEEeCC--CCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence 34454443 5678899999999999998765 59999999998887777666677889999999999999999997654
Q ss_pred C
Q psy14886 166 G 166 (505)
Q Consensus 166 g 166 (505)
+
T Consensus 84 ~ 84 (93)
T d1n26a1 84 A 84 (93)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.1e-13 Score=93.66 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.||.++++...+.+++.|.|+++ .+++.+|+|+|+..++..+....... ....+.|.+|.|++.|.|+|.|
T Consensus 3 spP~~l~v~~~~~~si~v~W~~p-----~~~~~~Y~i~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~a 73 (90)
T d1fnha2 3 SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPIQRTIKP----DVRSYTITGLQPGTDYKIYLYT 73 (90)
T ss_dssp CCCEEEEEEEECSSEEEEEEECC-----SSCCCCEEEEEEESSSSCCEEEECCT----TCSEEEEESCCTTCEEEEEEEE
T ss_pred CcCCCCEEEEecCCEEEEEEECC-----CCCCceeEEEEEEccCCceEEEecCC----CccEEEeCCCCCCcEEEEEEEE
Confidence 47999999999999999999973 25689999999998866666444332 3467899999999999999999
Q ss_pred ecCCCCCCCCc
Q psy14886 468 INDVGPGPESE 478 (505)
Q Consensus 468 ~n~~G~g~~s~ 478 (505)
+|..|.|++..
T Consensus 74 ~~~~g~s~p~~ 84 (90)
T d1fnha2 74 LNDNARSSPVV 84 (90)
T ss_dssp EETTEECCCEE
T ss_pred EeCCCCcCCEE
Confidence 99999998654
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=9e-13 Score=92.66 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=66.6
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++++...+.+++.|+|+++ .+.+.+|+|+|+..+...|....... . ..+.+.|.+|.|++.|.|+|.|
T Consensus 2 d~P~~l~v~~vt~~sv~l~W~~p-----~~~~~~Y~i~~~~~~~~~~~~~~~v~-~--~~~~~~i~~L~p~t~Y~~~V~a 73 (89)
T d1fnfa3 2 DSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVP-H--SRNSITLTNLTPGTEYVVSIVA 73 (89)
T ss_dssp CCCEEEEEESCCSSEEEEEEECC-----SSCCSEEEEEEECSCCSSCCEEEEEE-T--TCCEEEEESCCTTCEEEEEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEEeC-----CCEEeeEEEEEEECCCCCceEEEEEC-C--CccEEEECCCcccCEEEEEEEE
Confidence 47899999999999999999983 25689999999988755554332221 2 3457889999999999999999
Q ss_pred ecCCCCCCCCc
Q psy14886 468 INDVGPGPESE 478 (505)
Q Consensus 468 ~n~~G~g~~s~ 478 (505)
+|..|.|++..
T Consensus 74 ~~~~g~s~p~~ 84 (89)
T d1fnfa3 74 LNGREESPLLI 84 (89)
T ss_dssp EETTEECCCEE
T ss_pred EcCCcCcCCEE
Confidence 99999987653
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.5e-14 Score=97.55 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=57.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|+.+.|.|.+.|.|.+.++|+|++..+.. .+.+.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 16 ~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~----------------~~~~~~v~-~~d~G~Y~C~A~N~~G~~~~~~~ 78 (84)
T d2oz4a3 16 WPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------------IGESVTVT-RDLEGTYLCRARSTQGEVTREVT 78 (84)
T ss_dssp EETTCEECCCCCCEEESCCEEEEEETTTEECC----------------TTSCEECC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred EeCCCEEEEEEEEeEcCccEEEEEEeecccee----------------eeeeeccc-cCCCCEEEEEEEcCCCEEEEEEE
Confidence 35899999999999999999999999876652 12355788 89999999999999998888888
Q ss_pred EEEEe
Q psy14886 81 LRVLT 85 (505)
Q Consensus 81 l~v~~ 85 (505)
|.|..
T Consensus 79 l~V~~ 83 (84)
T d2oz4a3 79 VNVLS 83 (84)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88873
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=1.5e-12 Score=95.06 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=68.9
Q ss_pred CCCCCCCceee-eeccccccEEEEEEeCCccccCCCCceEEEEEEEcC----CCCcEEEEeeecCceeeEEEEcCCccce
Q psy14886 384 DKPYQAPSRIG-GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN----DTEFQSETLKEYGNVGIAVVRIPSEFYY 458 (505)
Q Consensus 384 ~~p~~~P~~~~-~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~L~p~ 458 (505)
+-||++|.+++ +...+.++++|+|++ +.+++++ +.|.+.|+... ...+.............+.+.+.+|.++
T Consensus 2 G~PP~~P~~v~~i~~~~~~sv~~sW~p--~~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 78 (107)
T d1cd9b1 2 GYPPASPSNLSCLMHLTTNSLVCQWEP--GPETHLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLY 78 (107)
T ss_dssp CCCCCCCEEEEEEEETTTTEEEEEEEC--CSCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTT
T ss_pred CCccCCCcCCEEEEecCCCEEEEEEcC--CCCCCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcC
Confidence 56889999998 456678899999997 5566665 67887777665 2333333333334446689999999999
Q ss_pred eeEEEEEEEecCCCCCCCC
Q psy14886 459 TEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G~g~~s 477 (505)
+.|.|||.|.|.+|.|.++
T Consensus 79 t~Y~frV~A~N~~G~s~S~ 97 (107)
T d1cd9b1 79 QYMAIWVQAENMLGSSESP 97 (107)
T ss_dssp SCEEEEEEEEETTEEEECC
T ss_pred ceEEEEEEEEeCCccccCC
Confidence 9999999999999998644
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.8e-12 Score=96.40 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=68.1
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcC----CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN----DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP 473 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~ 473 (505)
.++++|.|.|+++ ..++.|.+|+|.|+..+ ...|....+... ....+.|.+|.|++.|.|+|+|+|..|.
T Consensus 27 ~s~tsi~v~W~~p---~~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~---~~~s~~i~~L~p~t~Y~f~V~A~n~~G~ 100 (120)
T d1ujta_ 27 LTPTTVQVTWTVD---RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVP---TERSAVLVNLKKGVTYEIKVRPYFNEFQ 100 (120)
T ss_dssp CBTTEEEEEEEES---SCCSSCCEEEEEEEESSSSSTTTCCEEEECCCT---TCCEEEEESCCSSEEEEEEEEEESSSCC
T ss_pred eCCCeEEEEecCC---CCCCcEEEEEEEeeecccCCCCcceEEEEeccC---ceeEEEECCCCCCCEEEEEEEEEeCCcC
Confidence 5679999999984 23578999999999875 345665554332 2356789999999999999999999999
Q ss_pred CCCCceEEEeecce
Q psy14886 474 GPESEVVTIWHDPL 487 (505)
Q Consensus 474 g~~s~~~~~~t~p~ 487 (505)
|++|+.+.++|.+.
T Consensus 101 G~~S~~~~~~T~e~ 114 (120)
T d1ujta_ 101 GMDSESKTVRTTEE 114 (120)
T ss_dssp CCCCCCEEEEECSS
T ss_pred cCCCCCEEEEeCCC
Confidence 99999999999753
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.39 E-value=5.1e-13 Score=95.42 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=65.3
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-----eCCCEEEcCCCCCCCEEEEEEEEcCCCceee-
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDES- 170 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-----~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~- 170 (505)
.++.+.+|+++.|.|.+.|.|.+.+.|+++|..+......... ...+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 11 ~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 90 (97)
T d1biha3 11 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH 90 (97)
T ss_dssp CSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE
T ss_pred CCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEE
Confidence 4577899999999999999999999999999998654332221 1235999999999999999999999997654
Q ss_pred eEEEEE
Q psy14886 171 KGRLIV 176 (505)
Q Consensus 171 ~~~l~v 176 (505)
.+.|.|
T Consensus 91 s~~L~V 96 (97)
T d1biha3 91 SLKLTV 96 (97)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 577776
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.2e-13 Score=96.16 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 384 ~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
+.||++|.++++...+.+++.|+|++ +.+.+ ..++|+|+|+..+...|...... +.....+.+.+|.+++.|.|
T Consensus 1 G~PP~~P~n~~~~~~~~~si~~~W~p--~~~~~-~~~~y~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~~~~Y~f 74 (95)
T d1bqua1 1 GLPPEKPKNLSCIVNEGKKMRCEWDG--GRETH-LETNFTLKSEWATHKFADCKAKR---DTPTSCTVDYSTVYFVNIEV 74 (95)
T ss_dssp CCCCCCCEEEEEEEETTSCCEEEEEC--CSCCS-SCCEEEEEEEETTEECCCEECCS---SCTTEEECSSCCCTTSCEEE
T ss_pred CcCcCCCeeeEEEEccCCEEEEEEeC--cccCC-CceEEEEEEEEcccceeEeeccc---ccceeeeeeeecCCCcEEEE
Confidence 35788999999998999999999998 44544 45799999999875555433222 23456778899999999999
Q ss_pred EEEEecCCCCCCCC
Q psy14886 464 KVQAINDVGPGPES 477 (505)
Q Consensus 464 ~v~a~n~~G~g~~s 477 (505)
+|.|.|.+|.|..+
T Consensus 75 ~V~A~N~~G~s~S~ 88 (95)
T d1bqua1 75 WVEAENALGKVTSD 88 (95)
T ss_dssp EEEEEETTEEEECC
T ss_pred EEEEEeCCccccCC
Confidence 99999999998743
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.6e-13 Score=96.46 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=60.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+++|++++|.|.+.+ |.+.+.|+++|.++... ..++. ..+++|.|.+++ .+|+|.|+|.|.|..+......
T Consensus 9 ~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~------~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~A~n~~g~~~~~~ 80 (92)
T d1olza1 9 FKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE------SPKYGLMGRKNLLIFNLS-EGDSGVYQCLSEERVKNKTVFQ 80 (92)
T ss_dssp EETTSCEEECCCCSC-TTCEEEEEESSSBCCCC------SSSBCCTTTTCEEECSCC-GGGCEEEEEEEEEECSSSEEEE
T ss_pred EeCCCEEEEEEEeec-cCCceeeecCcccceee------eeeeecceeeEEEECCCC-HHHCcEEEEEEEEcCCCEEEEE
Confidence 479999999999988 66899999999988742 23333 356789999999 9999999999999888765554
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.+.+.
T Consensus 81 ~l~~~ 85 (92)
T d1olza1 81 VVAKH 85 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.37 E-value=2e-12 Score=90.33 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|.++++...+.+++.|.|+++ .+.+.+|.|+|+..+... ....+. . ....+.|.+|.|++.|.|+|.|+
T Consensus 2 aP~~l~v~~~t~~sv~v~W~~p-----~~~~~~Y~v~~~~~~~~~-~~~~~~--~--~~~~~~~~~L~p~t~Y~v~V~a~ 71 (87)
T d1qr4a1 2 NPKDLEVSDPTETTLSLRWRRP-----VAKFDRYRLTYVSPSGKK-NEMEIP--V--DSTSFILRGLDAGTEYTISLVAE 71 (87)
T ss_dssp CCEEEEEESCCSSEEEEEEECC-----SSCCSEEEEEEECTTCCE-EEEEEC--T--TCSEEEEESCCSSCEEEEEEEEE
T ss_pred cCcCcEEEEecCCEEEEEEECC-----CCCcceeEEEeecCCcce-eEEeCC--C--CcCEEEECCCCcCCEEEEEEEEE
Confidence 6899999999999999999983 246899999999877443 322222 2 33578999999999999999999
Q ss_pred cCCCCCCCCce
Q psy14886 469 NDVGPGPESEV 479 (505)
Q Consensus 469 n~~G~g~~s~~ 479 (505)
|..|.|+++.+
T Consensus 72 ~~~~~s~~~~~ 82 (87)
T d1qr4a1 72 KGRHKSKPTTI 82 (87)
T ss_dssp SSSCBCCCEEE
T ss_pred cCCCCccCEEE
Confidence 99999998754
|
| >d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.8e-12 Score=96.02 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=72.4
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCcccc----CCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQ----NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y 461 (505)
.|.||.++++. .+.+.+.|+|++|..... +..+..|.|+|+..+...|....... ....+.+.+.+|.|++.|
T Consensus 5 kP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~p~t~Y 81 (114)
T d2gysa2 5 QPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLS--NTSQATLGPEHLMPSSTY 81 (114)
T ss_dssp CCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEE--SSSEEEECTTTCCTTCEE
T ss_pred cCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeec--cCceEEEEeCCCCCCcEE
Confidence 45799999986 567899999999544332 33456899999998855544333332 224578899999999999
Q ss_pred EEEEEEecCCCC------CCCCceEEEeecc
Q psy14886 462 EVKVQAINDVGP------GPESEVVTIWHDP 486 (505)
Q Consensus 462 ~~~v~a~n~~G~------g~~s~~~~~~t~p 486 (505)
.|||+|.|..|. |++|+.+.+.|.|
T Consensus 82 ~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~p 112 (114)
T d2gysa2 82 VARVRTRLAPGSRLSGRPSKWSPEVCWDSQP 112 (114)
T ss_dssp EEEEEEEECTTSSCCBCCCCCCCCEEEECCC
T ss_pred EEEEEEEeCCCCCCCCCccCCcCCEeeeCcC
Confidence 999999999986 5778888887765
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.37 E-value=5.3e-13 Score=92.98 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=58.9
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-e
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~ 78 (505)
|.+|+.++|.|.+.+ .|.+.+.|+|||+.+... ..+..|.|.+++ .+|+|.|+|.|.|..+...+ .
T Consensus 12 v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----------~~~~~l~i~~v~-~~dsG~Y~C~a~n~~g~~~S~~ 79 (88)
T d2fcba2 12 FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----------RSDPNFSIPQAN-HSHSGDYHCTGNIGYTLYSSKP 79 (88)
T ss_dssp ECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------SSCCEEEETTCC-GGGCEEEEEEEEETTEEEECCC
T ss_pred EecCCeEEEEEEecCCCCCcEEEEEeeccccccc-----------ccccccccCccC-HHHCCeEEEEEEeCCCCEEeee
Confidence 479999999999965 567899999999887521 135689999999 99999999999998876654 4
Q ss_pred EEEEEEe
Q psy14886 79 AQLRVLT 85 (505)
Q Consensus 79 ~~l~v~~ 85 (505)
+.|.|..
T Consensus 80 v~l~V~~ 86 (88)
T d2fcba2 80 VTITVQA 86 (88)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6777763
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1e-12 Score=91.77 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-e
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~ 78 (505)
|.+|+.++|.|.+.+. |...+.|+|||+.+... .....|.|.+++ .+|+|.|+|.|.|..+...+ .
T Consensus 12 V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~-----------~~~~~l~i~~~~-~~dsG~Y~C~a~n~~~~~~S~~ 79 (89)
T d1f2qa2 12 VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-----------YENHNISITNAT-VEDSGTYYCTGKVWQLDYESEP 79 (89)
T ss_dssp EETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-----------CCSSEEEESSCC-GGGCEEEEEEEEETTEEEECCC
T ss_pred EeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc-----------cccceEEEeeee-eecCcEEEEEEEeCCCCeEeee
Confidence 5689999999999764 56899999999988632 124689999999 99999999999998776543 5
Q ss_pred EEEEEEe
Q psy14886 79 AQLRVLT 85 (505)
Q Consensus 79 ~~l~v~~ 85 (505)
+.|.|..
T Consensus 80 v~i~V~~ 86 (89)
T d1f2qa2 80 LNITVIK 86 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 7888885
|
| >d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9e-13 Score=97.26 Aligned_cols=99 Identities=21% Similarity=0.379 Sum_probs=74.9
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC---eEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST---WFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
+.|++|.++.+...+.+++.|+|.++.+++.++..|.++++...... |........ ......+.+. +|.+
T Consensus 9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~-~L~p 81 (111)
T d1wisa1 9 ELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSN------EPDARSMEVP-DLNP 81 (111)
T ss_dssp CCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEES------CTTCSEEEEC-SCCT
T ss_pred CCCcCCCCCEEEEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeec------ccceeEEEeC-CCCC
Confidence 35778888999888999999999999888999999999998765433 333221111 1122334444 4999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
++.|.|||+|.|.+|.|.+|.++..++|+
T Consensus 82 ~t~Y~frV~A~N~~G~s~~S~~s~~~~Tl 110 (111)
T d1wisa1 82 FTCYSFRMRQVNIVGTSPPSQPSRKIQTL 110 (111)
T ss_dssp TSEECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred CCEEEEEEEEEcCCcCCCCcCCCCCEEcc
Confidence 99999999999999999999887667664
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=7e-13 Score=94.93 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 2 DNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 2 ~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
.+|+.+.|.|.+. +.|.+.|.|+|++..+.... ....++...+++|.|.+++ .+|+|.|+|.+.|..|....++.
T Consensus 15 ~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~---~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~g~~~~~~~ 90 (101)
T d1iray1 15 SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST---EQASRIHQHKEKLWFVPAK-VEDSGHYYCVVRNSSYCLRIKIS 90 (101)
T ss_dssp ETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCC---CTTSSEEEETTEEEETTCC-GGGCEEEEEEEEETTEEEEEEEE
T ss_pred eCCCeEEEEeeCCCCCCCceEEEEECCccccccc---ccceEEeccCCEEEeccce-ecCCEEEEEEEECCCCeEEEEEE
Confidence 4799999999885 57889999999987654321 1344667788999999999 99999999999999999999999
Q ss_pred EEEEecCC
Q psy14886 81 LRVLTLKP 88 (505)
Q Consensus 81 l~v~~~~p 88 (505)
|.|....|
T Consensus 91 L~V~~~~p 98 (101)
T d1iray1 91 AKFVENEP 98 (101)
T ss_dssp EEEECCCT
T ss_pred EEEEeCCC
Confidence 99986443
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=9.5e-13 Score=93.71 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=70.4
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++++...+.+++.|.|++| .+.+.+|+|+|+..+...+.... ..+...+.+.+.+|.|++.|.|+|.|
T Consensus 3 d~P~~l~v~~vt~~sv~l~W~~p-----~~~~~~y~i~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~~~V~a 74 (94)
T d1j8ka_ 3 DRPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFP---APDGEEDTAELQGLRPGSEYTVSVVA 74 (94)
T ss_dssp CCCCCCEEEEEETTEEEEECCCC-----SSCCSCEEEEEEETTTEEEEECC---CCCSSCCEEEECSCCCCSEEEEEEEE
T ss_pred CCCCCCEEEEecCCEEEEEEeCC-----CccccceEEEEEeecCCCceEEE---ecCCCccEEEECCCCCCCEEEEEEEE
Confidence 46889999999999999999983 24688999999998755443221 22234568899999999999999999
Q ss_pred ecCCCCCCCCceEEEeecc
Q psy14886 468 INDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 468 ~n~~G~g~~s~~~~~~t~p 486 (505)
+|..|.|++.......+.|
T Consensus 75 ~~~~g~S~p~~~~~~T~~P 93 (94)
T d1j8ka_ 75 LHDDMESQPLIGTQSTAIP 93 (94)
T ss_dssp CSSSCCCCCEEEEEECCCC
T ss_pred EeCCCCcCCEEEEEEECCC
Confidence 9999999887655443333
|
| >d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.36 E-value=1.4e-12 Score=95.26 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCC-CCCeEEeeeccccce--eeeecCceeeEEeeeccCCcee
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW-NSTWFNVSEHVIGKE--VDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~-~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~y 357 (505)
||..+.+..+..++|.|+|.+|.+++.+|.+|.|+|+... ...|........... ..........+.+.+|.|++.|
T Consensus 2 PP~~p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 81 (107)
T d2ic2a1 2 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTY 81 (107)
T ss_dssp CCCCCEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEE
T ss_pred cCcCCEEEEEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEE
Confidence 4555678888999999999999988899999999998765 356766544332111 1111122333444459999999
Q ss_pred EEEEEEEcCCCcCCCCCCCCCccC
Q psy14886 358 EFKVIAGNELGYGEPSSPSPQYNT 381 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~~~~~~~t 381 (505)
.|||+|.|..|.|.+|..+..+.+
T Consensus 82 ~frV~A~N~~G~s~~S~~s~~~~~ 105 (107)
T d2ic2a1 82 RFRILAVYSNNDNKESNTSAKFYL 105 (107)
T ss_dssp EEEEEEEETTSCEEECCCCCCEEE
T ss_pred EEEEEEEcCCCCCCCCCCCCCEEc
Confidence 999999999999998887755544
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.6e-14 Score=99.90 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.|.|.+.++|++++.++...... .......+|.|.+++ .+|.| .|+|.|.|..|....++
T Consensus 14 v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~-~~d~G~~Y~C~a~N~~G~~~~s~ 87 (92)
T d2ifga1 14 VDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-----SGGLPSLGLTLANVT-SDLNRKNVTCWAENDVGRAEVSV 87 (92)
T ss_dssp CBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-----CCCSSEEEEEEESCC-STTTTCCEEECCEETTEECCEEE
T ss_pred EeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee-----eeeccceeEEEcccc-ccccceEEEEEEEcCCCEEEEEE
Confidence 579999999999999999999999998877532111 111133589999999 99999 79999999999887777
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 88 ~l~V 91 (92)
T d2ifga1 88 QVNV 91 (92)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 6654
|
| >d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.4e-12 Score=91.63 Aligned_cols=93 Identities=23% Similarity=0.385 Sum_probs=68.9
Q ss_pred CCCCCCceEEE-EEeCCeEEEEeecCCCC-CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 278 PPGLPGGVQVV-EVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 278 ~p~~p~~~~~~-~~~~~~v~l~w~~~~~~-~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
||.++..+++. ....++|.|+|.+|... +.+|..|.|+++..+...|...... ....+.+.+ |.+++
T Consensus 1 PP~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~----------~~~~~~v~~-L~p~t 69 (97)
T d2crza1 1 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQG----------SEVECTVSS-LLPGK 69 (97)
T ss_dssp CCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEE----------SCSEEEEES-CCTTC
T ss_pred CcCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecC----------CceEEEEcC-CCCCE
Confidence 45555555553 34568999999988754 5689999999999888888775332 122444554 99999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
.|.|||+|.|..|.|++|... .+.|.
T Consensus 70 ~Y~frV~A~N~~G~s~~S~~~-~~~T~ 95 (97)
T d2crza1 70 TYSFRLRAANKMGFGPFSEKC-DITTA 95 (97)
T ss_dssp EEEECCEEECSSCBCCCCCCE-EEECC
T ss_pred EEEEEEEEecCCeEcCCcCCC-eEEeC
Confidence 999999999999999988764 44443
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.6e-12 Score=94.09 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|.+|.++.+...+.+++.|+|+++ .+.+.+|.|+|+..++..+... +.. ..+.+.|.+|.|++.|.|+|.
T Consensus 1 P~~P~~l~~~~~t~~si~l~W~~p-----~~~i~~Y~v~~~~~~~~~~~~~-~~~----~~~~~~l~~L~p~t~Y~~~V~ 70 (102)
T d2cuha1 1 PDGPTQLRALNLTEGFAVLHWKPP-----QNPVDTYDIQVTAPGAPPLQAE-TPG----SAVDYPLHDLVLHTNYTATVR 70 (102)
T ss_dssp CSSCEEEECCCCSSSCEEEEEECC-----SSCCSEEEEEEECSSSCCEEEE-EET----TCSEEEECSCCSSSEEEEEEE
T ss_pred CcCCCccEEEEeCCCEEEEEEEee-----eccceeeEEEEEeccccceeee-eee----eeeeEEEccEEeeEEEEEEEE
Confidence 467999999999999999999983 2568999999998775555432 222 335789999999999999999
Q ss_pred EecCCCCCCCCceEEEeecc
Q psy14886 467 AINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t~p 486 (505)
|+|..|.|+++.. .+.|.+
T Consensus 71 a~~~~~~s~~~~~-~~~T~~ 89 (102)
T d2cuha1 71 GLRGPNLTSPASI-TFTTGL 89 (102)
T ss_dssp EEETTEECCCEEE-EEESCC
T ss_pred EEeCCCCcCCEEE-EEECCC
Confidence 9999999987754 455543
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.7e-13 Score=100.13 Aligned_cols=83 Identities=12% Similarity=0.278 Sum_probs=64.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCC-----CCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE-----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|++++|.|.+.|.|.+.+.|+|++..+... ........+....+++|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 16 v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~G~~ 94 (105)
T d1nbqa1 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT-REDTGTYTCMVSEEGGNS 94 (105)
T ss_dssp EETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCC-TTSCSEEEEEEEETTSSC
T ss_pred EeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEeccc-ccceeeEEEEEEECCCCE
Confidence 468999999999999999999999976543211 11112344556677899999999 999999999999999998
Q ss_pred EeeEEEEEE
Q psy14886 76 YSSAQLRVL 84 (505)
Q Consensus 76 ~~~~~l~v~ 84 (505)
...+.|.|.
T Consensus 95 ~~~~~v~v~ 103 (105)
T d1nbqa1 95 YGEVKVKLI 103 (105)
T ss_dssp EECCEEECC
T ss_pred EEEEEEEEE
Confidence 777666654
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=1.5e-12 Score=90.69 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=67.4
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++++...+.+++.|.|+++ .+.+.+|+|+|+..++..+. ..+.. ..+.+.|.+|.|++.|.|+|.|
T Consensus 2 ~~P~nl~v~~~~~~s~~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~-~~~~~----~~~~~~~~~L~p~t~Y~v~V~a 71 (86)
T d1tdqa3 2 DSPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSGISSE-VTVPR----DRTSYTLTDLEPGAEYIISITA 71 (86)
T ss_dssp CCCEEEEEEEECSSCEEEEEECC-----CSCCSEEEEEEECSSSCCEE-EEEES----SCSEEEECCCCTTCCEEEEEEE
T ss_pred ccCCCCEEEEecCCEEEEEEeCC-----CCCccceEEEEecccccceE-EEeCC----CccEEEECCCccccEEEEEEEE
Confidence 47899999999999999999983 24688999999987755443 23222 3357899999999999999999
Q ss_pred ecCCCCCCCCceE
Q psy14886 468 INDVGPGPESEVV 480 (505)
Q Consensus 468 ~n~~G~g~~s~~~ 480 (505)
+|..|.|.++...
T Consensus 72 ~~~~~~s~p~~~~ 84 (86)
T d1tdqa3 72 ERGRQQSLESTVD 84 (86)
T ss_dssp EETTEECCCEEEE
T ss_pred EcCCCEECCEEee
Confidence 9999999887654
|
| >d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.1e-12 Score=92.98 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeE
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~ 358 (505)
|.+|..+.+......++.|+|.++.+++.+|.+|.|+|+..+...+...... .....+.+.+|.+++.|.
T Consensus 1 P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~~~~~~~~----------~~~~~~~i~~L~p~t~Y~ 70 (93)
T d2vkwa2 1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLP----------SGSDHVMLKSLDWNAEYE 70 (93)
T ss_dssp CCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCCCCCEEEC----------TTCCEEEECSCCTTCEEE
T ss_pred CCCCccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCcceeeeeecc----------CCceEEEEeccccceEEE
Confidence 6788888888899999999999999888999999999998765433222111 223344445599999999
Q ss_pred EEEEEEcCCCcCCCCC
Q psy14886 359 FKVIAGNELGYGEPSS 374 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~ 374 (505)
|+|+|.|..|.|.++.
T Consensus 71 ~~V~A~N~~G~s~ps~ 86 (93)
T d2vkwa2 71 VYVVAENQQGKSKAAH 86 (93)
T ss_dssp EEEEEEETTEECCCEE
T ss_pred EEEEEEcCCCCcCCEe
Confidence 9999999999998764
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=3.3e-12 Score=90.43 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=70.1
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
..+|.++.+...+.+++.|+|+++ .+.+.+|.|+|+..+...+....... . ..+.+.+.+|.|++.|.|+|.
T Consensus 4 ~~~P~~l~v~~v~~~si~v~W~~p-----~~~~~~y~i~~~~~~~~~~~~~~~~~-~--~~~~~~i~~L~p~t~Y~v~V~ 75 (93)
T d1tdqa1 4 IDGPTQILVRDVSDTVAFVEWTPP-----RAKVDFILLKYGLVGGEGGKTTFRLQ-P--PLSQYSVQALRPGSRYEVSIS 75 (93)
T ss_dssp SCCCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEESSSSCCCEEEEEC-T--TCSEEEECSCCTTCEEEEEEE
T ss_pred CCcCCCCEEEEeCCCEEEEEEEcc-----ccCCCceEEEEEeccCcceeeEEEeC-C--CceEEEEeCcccceEEEEEEE
Confidence 358999999999999999999973 35789999999998855444333222 2 235789999999999999999
Q ss_pred EecCCCCCCCCceEEEee
Q psy14886 467 AINDVGPGPESEVVTIWH 484 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t 484 (505)
|+|..|.|+++. ..+.|
T Consensus 76 a~~~~g~s~~~~-~~~tT 92 (93)
T d1tdqa1 76 AVRGTNESDASS-TQFTT 92 (93)
T ss_dssp EEETTEECCCEE-EEEEC
T ss_pred EEeCCCCcCCEE-EEEEC
Confidence 999999999875 34443
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.35 E-value=1.6e-12 Score=92.36 Aligned_cols=83 Identities=27% Similarity=0.471 Sum_probs=65.9
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCc-EEE-eeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGR-RKI-FENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~-~~~-~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
.|.|...+ .++.+.+|+.+.|.|.+.|.|.+ .+.|+++|..+..... ... ..+++|.|.++..+|+|.|+|.|.|
T Consensus 2 ~P~i~~~p--~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 79 (94)
T d1biha1 2 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET 79 (94)
T ss_dssp CCEECCCC--SEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred CCEEEecC--CcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence 35555554 56789999999999999999866 7999999998865433 222 2356899999999999999999999
Q ss_pred CCCceeee
Q psy14886 164 VHGMDESK 171 (505)
Q Consensus 164 ~~g~~~~~ 171 (505)
..|.....
T Consensus 80 ~~G~~~s~ 87 (94)
T d1biha1 80 PAGVASSR 87 (94)
T ss_dssp TTEEEECC
T ss_pred CCCEEEEE
Confidence 99975543
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.3e-12 Score=90.58 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=67.4
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|.+|.++++...+.+++.|+|+++ . .+.++.|.|+|+..+...|...... ..+.+.|.+|.|++.|.|||+
T Consensus 3 P~~P~nl~v~~~~~~~v~l~W~~p--~--~~~~~~y~v~y~~~~~~~~~~~~~~-----~~~~~~~~~L~p~t~Y~frVR 73 (95)
T d2b5ic1 3 PWAPENLTLHKLSESQLELNWNNR--F--LNHCLEHLVQYRTDWDHSWTEQSVD-----YRHKFSLPSVDGQKRYTFRVR 73 (95)
T ss_dssp CCCCEEEEEEEEETTEEEEEEECS--S--CSTTCEEEEEEEETTCSSCEEEEEC-----SSCEEEECSCCTTSCEEEEEE
T ss_pred CcCCCCCEEEEEeCCEEEEEECCC--C--CceeEEEEEEEEcCCCceeeEeeec-----ccceeEcCCCCCCCEEEEEEE
Confidence 568999999988999999999983 2 3568899999999998888765543 246889999999999999999
Q ss_pred EecCCC---CCCCCce
Q psy14886 467 AINDVG---PGPESEV 479 (505)
Q Consensus 467 a~n~~G---~g~~s~~ 479 (505)
|.+..| .|.+|+.
T Consensus 74 a~~~~~~~~~g~WSeW 89 (95)
T d2b5ic1 74 SRFNPLCGSAQHWSEW 89 (95)
T ss_dssp EECCSSSCCCCCCCCC
T ss_pred EeeCCCCCCCCCccCC
Confidence 987654 3445544
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.7e-12 Score=90.44 Aligned_cols=84 Identities=24% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
||.++.+...+.+++.|.|+++ .+.+.+|.|+|+..+...+....... ...+.+.|.+|.|++.|.|+|.|+
T Consensus 2 pP~~l~~~~v~~~si~l~W~~p-----~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~a~ 73 (90)
T d1fnha1 2 APTDLKFTQVTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKEINLA---PDSSSVVVSGLMVATKYEVSVYAL 73 (90)
T ss_dssp CCEEEEEEEECSSCEEEEEECC-----SSCCSEEEEEEEESSSCSCCCEEEEC---TTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCCCEEEEEecCCEEEEEEEcc-----ceeccceEEEEEeeeCCCceEEEEeC---CCCeEEEEecccCceEEEEEEEEE
Confidence 6899999999999999999983 34588999999987744444332222 234678999999999999999999
Q ss_pred cCCCCCCCCceE
Q psy14886 469 NDVGPGPESEVV 480 (505)
Q Consensus 469 n~~G~g~~s~~~ 480 (505)
|..|.|+++...
T Consensus 74 n~~g~s~~~~~~ 85 (90)
T d1fnha1 74 KDTLTSRPAQGV 85 (90)
T ss_dssp ETTEECCCEEEE
T ss_pred eCCCCcCCEeEE
Confidence 999999998654
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.1e-12 Score=92.21 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=67.6
Q ss_pred eCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee--------CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 102 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 102 ~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~--------~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
..++...|.|.+.|.|.|++.|+++|..+..+.+..... ...|.|.+++..|.|.|+|.|.|..|.....+.
T Consensus 14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (103)
T d1wwbx_ 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence 357788899999999999999999999998765544321 125999999999999999999999999999999
Q ss_pred EEEEeCCe
Q psy14886 174 LIVLHGPS 181 (505)
Q Consensus 174 l~v~~~p~ 181 (505)
|.|...|.
T Consensus 94 v~V~~~P~ 101 (103)
T d1wwbx_ 94 AHFMGWPG 101 (103)
T ss_dssp ECCSCCCC
T ss_pred EEEEeCCC
Confidence 98877664
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.33 E-value=1.8e-12 Score=95.23 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=59.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-----------ECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----------QDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----------~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.+.|.|.+.|.|+|++......... ....+... ..+.|.|.+++ .+|+|.|+|.|.
T Consensus 17 v~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~ 94 (109)
T d2fdbp2 17 TVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP-DGLPYLKVLKAAGVNTTDKEIEVLYIRNVT-FEDAGEYTCLAG 94 (109)
T ss_dssp ECTTCCEEEEEEEECSSCCEEEEEEEC--------------CEEEECCEEEEETTEEEEEEEECSCC-GGGCEEEEEEEE
T ss_pred EecCCcEEEEEEEEEcCCCeEEEEecCccCCceecc-CCceeEeecccceeEEecCCcEEEEECCCC-HHHCeEEEEEEE
Confidence 468999999999999999999999976543221000 00001110 13579999999 999999999999
Q ss_pred cccCceEeeEEEEEE
Q psy14886 70 NQLKTRYSSAQLRVL 84 (505)
Q Consensus 70 ~~~~~~~~~~~l~v~ 84 (505)
|..|....++.|.|.
T Consensus 95 N~~G~~~~~~~L~Vl 109 (109)
T d2fdbp2 95 NSIGISFHSAWLTVL 109 (109)
T ss_dssp CSSCEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEC
Confidence 999999888888873
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.2e-13 Score=101.17 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCC----------------------CCCCCCcEEE--E--CCeEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL----------------------PLEDQDRYFI--Q--DNVLTIRY 54 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~----------------------~~~~~~~~~~--~--~~~L~i~~ 54 (505)
|.+|++++|.|.+.|.|.+.+.|++++..+..... ......++.+ . ..+|.|.+
T Consensus 21 v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 100 (130)
T d1gxea_ 21 VVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEG 100 (130)
T ss_dssp ESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSC
T ss_pred EEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEECc
Confidence 46899999999999999999999998876643310 0111223332 2 24799999
Q ss_pred CCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 55 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus 101 v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 101 AE-KEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp CC-TTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CC-hhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 99 999999999999999998888888875
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.6e-12 Score=93.02 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCCCCceEEEE------EEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTC------EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C------~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|..|....|.| .+.++|.+.|.|+||+++|.. ...++...+++|.|.+++ .+|+|.|+|.|.|..+.
T Consensus 11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL------DNIHFSGVKDRLIVMNVA-EKHRGNYTCHASYTYLG 83 (103)
T ss_dssp EESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC------CSSSEEEETTEEEESSCC-GGGCEEEEEEEEEEETT
T ss_pred EecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC------CCcEEEecCCEEEEcccc-cccCcEEEEEEEECcCC
Confidence 35799999999 556788999999999999973 345677788999999999 99999999999987765
Q ss_pred eEe
Q psy14886 75 RYS 77 (505)
Q Consensus 75 ~~~ 77 (505)
...
T Consensus 84 ~~~ 86 (103)
T d1iray2 84 KQY 86 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.8e-12 Score=89.35 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=65.8
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
||.++++...+.+++.|.|+++ .++.+.+|.|+|+..++..+....... . ..+.+.|.+|.|++.|.|+|.|+
T Consensus 3 pP~~l~~~~~~~~sv~l~W~~p----~~~~~~~y~v~y~~~~~~~~~~~~~~~-~--~~~~~~i~~L~p~t~Y~~~V~a~ 75 (91)
T d1fnfa2 3 PPTDLRFTNIGPDTMRVTWAPP----PSIDLTNFLVRYSPVKNEEDVAELSIS-P--SDNAVVLTNLLPGTEYVVSVSSV 75 (91)
T ss_dssp CCEEEEEESCCSSCEEEEEECC----TTCCCSEEEEEEEETTCTTCCEEEEEC-T--TCCEEEECSCCTTCEEEEEEEEE
T ss_pred cCCceEEEEeCCCEEEEEEEec----CCCCcceeEEEEEECCCCccEEEEEeC-C--CceEEEEeceeCCCEEEEEEEEE
Confidence 6899999999999999999983 245689999999998755444332221 2 34578999999999999999999
Q ss_pred cCCCCCCCC
Q psy14886 469 NDVGPGPES 477 (505)
Q Consensus 469 n~~G~g~~s 477 (505)
|..|.|++.
T Consensus 76 ~~~g~S~p~ 84 (91)
T d1fnfa2 76 YEQHESTPL 84 (91)
T ss_dssp ETTEECCCE
T ss_pred cCCCCCCCE
Confidence 999998754
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.7e-12 Score=89.25 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=63.5
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND 470 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~ 470 (505)
+|+++...+.+++.|.|++| .+.+.+|.|+|+..+...+....... . ..+.+.|.+|.|++.|.|+|.|+|.
T Consensus 1 rnl~v~~~t~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~-~--~~t~~~l~~L~p~t~Y~~~V~a~~~ 72 (91)
T d1fnaa_ 1 RDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTVP-G--SKSTATISGLKPGVDYTITVYAVTG 72 (91)
T ss_dssp CCCEEEEECSSCEEEECCCC-----SSCCSEEEEEEEETTCCSCCEEEEEE-T--TCCEEEECSCCTTCEEEEEEEEECT
T ss_pred CCCEEEEeCCCEEEEEEEcc-----ceEecEEEEEEEcCCCCceeEEEEeC-C--CccEEEeCCCCCCCEEEEEEEEEeC
Confidence 36788888999999999973 24689999999998755554332221 1 3357899999999999999999999
Q ss_pred CCCCCCCc
Q psy14886 471 VGPGPESE 478 (505)
Q Consensus 471 ~G~g~~s~ 478 (505)
.|.|+++.
T Consensus 73 ~g~s~~~s 80 (91)
T d1fnaa_ 73 RGDSPASS 80 (91)
T ss_dssp TCCSSCSC
T ss_pred CccCCCcC
Confidence 99998764
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.32 E-value=1.2e-12 Score=93.06 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=57.3
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+.++|.|.+.|.|. ..+.|++||..+... ..+... .+++|.|.+++ .+|+|.|+|.|.|..|...+
T Consensus 14 v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~------~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~s 86 (94)
T d1biha1 14 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ------EHNAALRKDEGSLVFLRPQ-ASDEGHYQCFAETPAGVASS 86 (94)
T ss_dssp EETTSCEEECCCEESCCSSCEEEEEESSSBCCTT------TTTEEECTTSCCEEESSCC-GGGCEEEEEEEEETTEEEEC
T ss_pred EeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeee------cceeeecccceEEEEeccC-hhcCeEEEEEEEeCCCEEEE
Confidence 468999999999999885 479999999988642 223332 45789999999 99999999999999987654
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.2e-12 Score=91.50 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=63.8
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-------ECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-------QDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+..+.|.|.+.|.|.+.|.|+|||.+|..+ ...++.. ..+.|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~ 88 (103)
T d1wwbx_ 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNES-----KYICTKIHVTNHTEYHGCLQLDNPT-HMNNGDYTLIAKNEYGKD 88 (103)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEEECCC-----SSEEEEEEEECSSEEEEEEEEESCC-GGGCEEEEEEEECSSCEE
T ss_pred cceeEEEEEEEEEeCCCEEEEEECCEEeeee-----eeeeeeecccccccceEEEEECCCC-HHhCceEEEEEeccCCEE
Confidence 4667789999999999999999999999742 1111111 12479999999 999999999999999999
Q ss_pred EeeEEEEEEecCCC
Q psy14886 76 YSSAQLRVLTLKPS 89 (505)
Q Consensus 76 ~~~~~l~v~~~~p~ 89 (505)
...+.|.|.. +|.
T Consensus 89 ~~~~~v~V~~-~P~ 101 (103)
T d1wwbx_ 89 EKQISAHFMG-WPG 101 (103)
T ss_dssp EEEEEECCSC-CCC
T ss_pred EEEEEEEEEe-CCC
Confidence 8888888875 443
|
| >d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neural cell adhesion molecule 1, NCAM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.6e-12 Score=90.78 Aligned_cols=97 Identities=28% Similarity=0.340 Sum_probs=71.0
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.|.+|.... .....+++.|+|.+|.. ++.+|.+|.|+|+..+...|.......... .....+.+. +|.+++.
T Consensus 2 vP~~P~~~~-~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~-~L~p~t~ 74 (101)
T d2haza1 2 TPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA-----SMEGIVTIV-GLKPETT 74 (101)
T ss_dssp CCCCCEEEE-EEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHH-----HHHSEEEEC-SCCTTCE
T ss_pred cCcCCccCE-EEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecc-----cceeEEEec-CCCCCeE
Confidence 577886444 45677899999998864 456899999999998888877654432200 012234444 4999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
|.|||+|.|..|.|++|... .+.|.
T Consensus 75 Y~frV~A~N~~G~g~~S~~~-~~~T~ 99 (101)
T d2haza1 75 YAVRLAALNGKGLGEISAAS-EFKTQ 99 (101)
T ss_dssp EEEEEEEEETTEECCCCCCE-EEECC
T ss_pred EEEEEEEEeCCcCcCCCCce-eEEeC
Confidence 99999999999999988764 44443
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=8.3e-13 Score=95.58 Aligned_cols=83 Identities=13% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcC-----CCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNS-----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|++++|.|.+.+.|.+.+.|+|++..+.. .........+....+++|.|.+++ .+|+|.|+|.+.|..|..
T Consensus 13 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~-~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT-RKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCC-GGGCEEEEEEEEETTSSS
T ss_pred EeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECC-ccCCEEEEEEEEECCCCE
Confidence 46899999999999999999999995432211 111112345666678899999999 999999999999999988
Q ss_pred EeeEEEEEE
Q psy14886 76 YSSAQLRVL 84 (505)
Q Consensus 76 ~~~~~l~v~ 84 (505)
...+.+.|.
T Consensus 92 ~~~~~v~v~ 100 (102)
T d1f97a1 92 YGEVSIHLT 100 (102)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 777666654
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.8e-12 Score=91.61 Aligned_cols=77 Identities=25% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEE-CCEECcCCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFR-NGELLNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~-~~~~l~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|+++.|.|.+.|.|+ +.|.|+| ++..+.. ...++... .++|.|.+++ .+|+|.|+|.|.|..|
T Consensus 12 v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~------~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G 84 (97)
T d1epfa1 12 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNAN-IDDAGIYKCVVTAEDG 84 (97)
T ss_dssp EETTCCEEEEEEECCCSCCCEEEEECTTSCEECC------BSSSEEEEEEETTEEEEEECSCC-GGGCEEEEEEEEETTT
T ss_pred EccCCcEEEEEEEEeccCCCEEEEEEeeeeeeee------ccccEEEEeecCcceEEEcccCc-hhhceEEEEEEEeCCC
Confidence 468999999999999874 7999999 4555542 23344331 2579999999 9999999999999988
Q ss_pred ce-EeeEEEEEE
Q psy14886 74 TR-YSSAQLRVL 84 (505)
Q Consensus 74 ~~-~~~~~l~v~ 84 (505)
.. ...+.|.|+
T Consensus 85 ~~~~~tv~l~V~ 96 (97)
T d1epfa1 85 TQSEATVNVKIF 96 (97)
T ss_dssp EEEEEEEEEEEE
T ss_pred cEEEEEEEEEEE
Confidence 64 345667665
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.5e-12 Score=88.97 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=61.8
Q ss_pred EEeeCCCeEEEEeecCCC-CCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCcee-eeEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~-~~~~l~v 176 (505)
..+.+|++++|.|.+.+. +...+.|+|||..+.... ....|.|.+++.+|+|.|+|.|.|..+... ..+.|.|
T Consensus 10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V 84 (89)
T d1f2qa2 10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 84 (89)
T ss_dssp SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEE
Confidence 457899999999998665 455999999999886432 245699999999999999999999877654 3478888
Q ss_pred EeCC
Q psy14886 177 LHGP 180 (505)
Q Consensus 177 ~~~p 180 (505)
..+|
T Consensus 85 ~~~P 88 (89)
T d1f2qa2 85 IKAP 88 (89)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 7665
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.31 E-value=2.2e-12 Score=89.82 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=59.7
Q ss_pred EEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v 176 (505)
..+.+|++++|.|.+.+ .|.+.+.|+|+|+.+... ..++.|.|.++..+|+|.|+|.|.|..|...+ .+.|.|
T Consensus 10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V 84 (88)
T d2fcba2 10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV 84 (88)
T ss_dssp SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-----ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEE
Confidence 45889999999999865 466799999999877432 23456999999999999999999998886543 467777
Q ss_pred Ee
Q psy14886 177 LH 178 (505)
Q Consensus 177 ~~ 178 (505)
..
T Consensus 85 ~~ 86 (88)
T d2fcba2 85 QA 86 (88)
T ss_dssp CC
T ss_pred eC
Confidence 43
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.4e-12 Score=95.06 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCCCCceEEEEEEeccC---CCeEEEEECCEECcCCCCCCCCCCcEEE----------ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP---DVTYSWFRNGELLNSETLPLEDQDRYFI----------QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p---~~~~~W~~~~~~l~~~~~~~~~~~~~~~----------~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|.+|++++|.|.+.|.| .+.|.|+|++....... ...++.. ....|.|.+++ .+|+|.|+|.
T Consensus 12 v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 86 (113)
T d2dava1 12 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK----AGKHLQLKETFERHSRVYTFEMQIIKAK-DNFAGNYRCE 86 (113)
T ss_dssp EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHH----TTSSEEEEEEEETTTTEEEEEEEECSCC-TTSCEEEEEE
T ss_pred EeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccc----cceeeeeccceeeEeecCEEEEEEccCC-HHHCeEEEEE
Confidence 46899999999999987 57999999875332110 1122221 12469999999 9999999999
Q ss_pred EEcccCceEeeEEEEEEe
Q psy14886 68 AKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 68 ~~~~~~~~~~~~~l~v~~ 85 (505)
|.|..|.....+.|.|..
T Consensus 87 a~N~~G~~~~~~~L~V~~ 104 (113)
T d2dava1 87 VTYKDKFDSCSFDLEVHE 104 (113)
T ss_dssp EECSSCEEEECCEEEEEC
T ss_pred EEeCCCEEEEEEEEEEEc
Confidence 999999999999999985
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.2e-13 Score=92.91 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
.+|.++++...+.+++.|.|+++ .+.+.+|.|+|+..+...+.... .. ....+.+.|.+|.|++.|.|+|.|
T Consensus 2 daP~nl~v~~~~~~s~~l~W~~p-----~~~i~~Y~i~~~~~~~~~~~~~~-~~--~~~~~~~~~~~L~p~t~Y~~~V~a 73 (89)
T d1fnha3 2 DAPSNLRFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVP-RP--RPGVTEATITGLEPGTEYTIYVIA 73 (89)
T ss_dssp CCCEEEEEEEEETTEEEEEEECC-----SSCCSEEEEEEECTTSCCEECTT-CC--CTTCCEEEEESCCTTCEEEEEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEeCC-----CcCCceEEEEEeeccCCccEEEE-Ec--CCCccEEEEEeeeCCCEEEEEEEE
Confidence 47899999999999999999983 25699999999988755544221 11 223467899999999999999999
Q ss_pred ecCCCCCCC
Q psy14886 468 INDVGPGPE 476 (505)
Q Consensus 468 ~n~~G~g~~ 476 (505)
+|..|.|++
T Consensus 74 ~n~~g~S~p 82 (89)
T d1fnha3 74 LKNNQKSEP 82 (89)
T ss_dssp ESSSCEEEE
T ss_pred EcCCCEeCC
Confidence 999998654
|
| >d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.7e-12 Score=91.57 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=71.8
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
..+|.+|..+.+.....++|.|+|.+|.+++.++..|.++++......+....... ....+.+. +|.+++
T Consensus 8 ~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~---------~~~~~~~~-~L~p~t 77 (105)
T d1x3da1 8 SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMG---------SQKQFKIT-KLSPAM 77 (105)
T ss_dssp CSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEE---------SCSEEEEE-SCCTTC
T ss_pred CCCCcCCCCCEEEEccCCEEEEEEECCCCCcCccEEEEEEEecCCCcceeEEEecC---------CccEEEec-CCcCCc
Confidence 46788999999999999999999999998889999999999866554333222111 12344444 499999
Q ss_pred eeEEEEEEEcCCCcCCCCCCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~ 376 (505)
.|.|||+|.|..|.|++|...
T Consensus 78 ~Y~frV~A~N~~G~s~~S~~~ 98 (105)
T d1x3da1 78 GCKFRLSARNDYGTSGFSEEV 98 (105)
T ss_dssp EEEEECCEEESSCBCCCCCCE
T ss_pred EEEEEEEEECCCeEcCCCCcE
Confidence 999999999999999988764
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.7e-12 Score=91.49 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=62.3
Q ss_pred CCCCceEEEE---EEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE---------CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 2 DNQADLTWTC---EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ---------DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 2 ~~G~~~~l~C---~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~---------~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
.+|....+.| .+.|.|.+.++|+|||++|.... ..+.... .+.|.|.++. .+|+|.|+|.|.
T Consensus 10 ~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~A~ 83 (107)
T d1he7a_ 10 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETS-----FIFTEFLEPAANETVRHGCLRLNQPT-HVNNGNYTLLAA 83 (107)
T ss_dssp CCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCS-----SEEEEEECCCSSCCCEEEEEEEESCC-GGGCEEEEEEEE
T ss_pred CCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCcc-----ceeeeeeeeeeeeeccceEEEECccc-HHHCcEEEEEEE
Confidence 4566766665 78899999999999999987431 1111221 2469999999 999999999999
Q ss_pred cccCceEeeEEEEEEecCC
Q psy14886 70 NQLKTRYSSAQLRVLTLKP 88 (505)
Q Consensus 70 ~~~~~~~~~~~l~v~~~~p 88 (505)
|..|....++.|.|.. +|
T Consensus 84 N~~G~~~~~i~v~v~~-~P 101 (107)
T d1he7a_ 84 NPFGQASASIMAAFMD-NP 101 (107)
T ss_dssp ETTEEEEEEEEECCCS-CT
T ss_pred eCCCEEEEEEEEEEEc-CC
Confidence 9999998888888885 44
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=3.3e-12 Score=89.57 Aligned_cols=76 Identities=20% Similarity=0.420 Sum_probs=62.2
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC-CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
...+.+|+++.|.|.+.+ |.+.+.|+++|..+.. ..++.+..+++|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l 82 (92)
T d1olza1 6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV 82 (92)
T ss_dssp EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence 356899999999999988 6679999999988754 344555667789999999999999999999988876554433
|
| >d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Type I titin module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.3e-12 Score=93.61 Aligned_cols=90 Identities=30% Similarity=0.493 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.||.+|..+.+..++.++|.|+|++|. +++.++..|.++++......|........ ....+.+.+ |.+++
T Consensus 1 ~Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~-L~p~t 71 (104)
T d1bpva_ 1 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI--------LENEFTVSG-LTEDA 71 (104)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCC--------CSSEEEECS-CCSSC
T ss_pred CCCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeecc--------ceeEEEEcC-CCCCC
Confidence 378899999999999999999999876 45578999999999988888876543322 233445555 99999
Q ss_pred eeEEEEEEEcCCCc-CCCCCC
Q psy14886 356 TYEFKVIAGNELGY-GEPSSP 375 (505)
Q Consensus 356 ~y~~~v~a~n~~G~-~~~s~~ 375 (505)
.|.|||+|.|..|. |++|..
T Consensus 72 ~Y~frV~A~n~~G~~s~~S~~ 92 (104)
T d1bpva_ 72 AYEFRVIAKNAAGAISPPSEP 92 (104)
T ss_dssp CEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCCcCC
Confidence 99999999999996 554443
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=3.9e-12 Score=93.45 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=62.2
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCCCC---CCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSETL---PLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~---~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|++++|.|.+. |.|.+.|.|+|++..+..... .......... ..+.|.|.+++ .+|+|.|+|.|.|..|.
T Consensus 14 v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~-~~D~G~Y~C~a~N~~G~ 92 (110)
T d1f97a2 14 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT-AFDSGEYYCQAQNGYGT 92 (110)
T ss_dssp EETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCC-GGGCEEEEEEEECSSSC
T ss_pred EecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCC-ccCCEEEEEEEEECCCc
Confidence 46899999999985 789999999999998864321 1111122222 34689999999 99999999999999987
Q ss_pred eEe--eEEEEEEe
Q psy14886 75 RYS--SAQLRVLT 85 (505)
Q Consensus 75 ~~~--~~~l~v~~ 85 (505)
... .+.|.|..
T Consensus 93 ~~~s~~v~l~V~~ 105 (110)
T d1f97a2 93 AMRSEAAHMDAVE 105 (110)
T ss_dssp CEECCCEEEEEES
T ss_pred EEEEEEEEEEEEe
Confidence 665 45666664
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.6e-13 Score=92.65 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=52.7
Q ss_pred CCCCceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.+|++++|.|.+.+.| .++|+|+|++.++.. ....+...+.+|.|.+++ .+|+|.|+|.|.|..
T Consensus 19 ~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~ 83 (93)
T d1n26a1 19 LPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS------HPSRWAGMGRRLLLRSVQ-LHDSGNYSCYRAGRP 83 (93)
T ss_dssp CTTCCEEEECTTSCTTCCSEEEEEEECSSSSC------CCEEEEEESSEEEECSCC-GGGCEEEEEESSSSC
T ss_pred eCCCcEEEEEEeecCCCCceEEEEEccccccc------eeeEEecCCCEEEECCCC-hhcCEEEEEEECCcc
Confidence 5799999999998865 469999999988863 223444578899999999 999999999997643
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.30 E-value=4.3e-12 Score=88.42 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=59.3
Q ss_pred EEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v 176 (505)
..+.+|++++|.|.+.+ .|.+.+.|++||+.+.. ...++.|.|.+++.+|+|.|+|.|.|..+...+ .+.|.|
T Consensus 12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-----~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV 86 (89)
T d1fnla2 12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 86 (89)
T ss_dssp SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-----eccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEE
Confidence 45889999999999864 45669999999987643 234568999999999999999999998876543 467776
Q ss_pred E
Q psy14886 177 L 177 (505)
Q Consensus 177 ~ 177 (505)
.
T Consensus 87 ~ 87 (89)
T d1fnla2 87 T 87 (89)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6e-12 Score=92.28 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred CCCCCceEEEEEEeccC---CCeEEEEECCEECcCCCCCCCCCCcEEE----------ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP---DVTYSWFRNGELLNSETLPLEDQDRYFI----------QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p---~~~~~W~~~~~~l~~~~~~~~~~~~~~~----------~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|.+|++++|.|.+.|.| .+.|.|+|++...... ....++.. ..++|.|.+++ .+|+|.|+|.
T Consensus 16 v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~ 90 (110)
T d2avga1 16 VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSS----KVGQHLQLHDSYDRASKVYLFELHITDAQ-PAFTGGYRCE 90 (110)
T ss_dssp EETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTT----TCSSSEEEEEEEETTTTEEEEEEEEESCC-TTCCEEEEEE
T ss_pred EECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecc----cCCceeEeeeeeEEecccCEEEEEEeccC-HHHCcEEEEE
Confidence 46899999999999987 5789999987543321 12222322 12479999999 9999999999
Q ss_pred EEcccCceEeeEEEEEEe
Q psy14886 68 AKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 68 ~~~~~~~~~~~~~l~v~~ 85 (505)
|.|..|....++.|.|.+
T Consensus 91 a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 91 VSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EEETTEEEEEEEEEEEES
T ss_pred EEECCCeEEEEEEEEEEe
Confidence 999999999999999985
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=9.4e-12 Score=89.72 Aligned_cols=88 Identities=26% Similarity=0.395 Sum_probs=66.9
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEe----c--CCCcEEEeeCC---CEEEcCCC-CCCCE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII----G--SGGRRKIFENG---NLLISPVS-RDDSG 155 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~----~--~~~~~~~~~~~---~l~i~~v~-~~d~G 155 (505)
||.+...+ ....+.+|+.+.|.|.+.|.|.+ .+.|++++... . ...++.+.... .|.|.++. .+|+|
T Consensus 2 PP~i~~~~--~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G 79 (101)
T d3b5ha1 2 PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG 79 (101)
T ss_dssp SCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred CceEEEcC--CcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence 56666554 55678999999999999999877 79999965322 1 12234333332 59999998 57999
Q ss_pred EEEEEEEcCCCceeeeEEEEE
Q psy14886 156 IYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~l~v 176 (505)
.|+|.|.|..|.....+.|.|
T Consensus 80 ~Y~C~A~N~~G~~~~~~~L~V 100 (101)
T d3b5ha1 80 QYRCNGTSSKGSDQAIITLRV 100 (101)
T ss_dssp EEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEECCCEEEEEEEEEE
Confidence 999999999999988888877
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=5.6e-12 Score=91.42 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=59.2
Q ss_pred CceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--------ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--------QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 5 ~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
....|.|.+.|.|.+.++|+|||++|... .++.. ..+.|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 18 ~~~~i~~~v~G~P~P~v~W~~n~~~i~~~-------~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~ 89 (105)
T d1wwca_ 18 LEHCIEFVVRGNPPPTLHWLHNGQPLRES-------KIIHVEYYQEGEISEGCLLFNKPT-HYNNGNYTLIAKNPLGTAN 89 (105)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECCCS-------SSEEEEEEECSSEEEEEEEEESCC-GGGCEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEEEeCCCeEEEEeCccccCCC-------cceeeeEEeecccceEEEEEeecc-cccceEEEEEEEcCCCEEE
Confidence 33457778999999999999999999743 22221 12469999999 9999999999999999998
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
.++.|.|..
T Consensus 90 ~~~~v~V~~ 98 (105)
T d1wwca_ 90 QTINGHFLK 98 (105)
T ss_dssp EEEEECCSC
T ss_pred EEEEEEEEe
Confidence 888888875
|
| >d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.5e-11 Score=86.72 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=69.5
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
+|..|.++++...+.++|.|+|.++. ..++.++.|.+++...+.. |.... ....+.+.+ |.|++.
T Consensus 2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~~~------------~~t~~~i~~-L~p~t~ 67 (94)
T d1x5aa1 2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQMV------------LEPRVLLTK-LQPDTT 67 (94)
T ss_dssp CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEEEE------------SSSEEEEES-CCSSCE
T ss_pred cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEEee------------ccCEEEECC-CCCCCE
Confidence 67888999999999999999999875 4456678899999876543 22221 123445555 999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
|.|||+|.|..|.|++|... .++|.
T Consensus 68 Y~~rV~A~n~~G~g~~S~~~-~~~T~ 92 (94)
T d1x5aa1 68 YIVRVRTLTPLGPGPFSPDH-EFRTS 92 (94)
T ss_dssp EEEEEEEECSSSCCCCCCCE-EEECC
T ss_pred EEEEEEEEcCCcCcCCCCCE-EEEeC
Confidence 99999999999999988764 55553
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.7e-12 Score=97.13 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCCccCC---CCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC-----------------------------
Q psy14886 87 KPSFKKR---PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----------------------------- 134 (505)
Q Consensus 87 ~p~~~~~---~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~----------------------------- 134 (505)
||.+... ..+..+.+.+|++++|.|.+.|.|.+.+.|++++..+....
T Consensus 4 PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (130)
T d1gxea_ 4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 83 (130)
T ss_dssp CCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSS
T ss_pred CCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCc
Confidence 6666432 23467889999999999999999999999999876653211
Q ss_pred cEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 135 RRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 135 ~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+..+... ..|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 84 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 84 RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp SCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred eEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 1111111 149999999999999999999999999888888874
|
| >d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-A receptor 8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.2e-12 Score=90.78 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=72.9
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.+|.+|..+.+...+.+++.|+|++|.+.++++.+|.|+|+..+...+...... .....+.+.+ |.+++.
T Consensus 2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~---------~~~~~~~i~~-L~p~t~ 71 (98)
T d1x5la1 2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLK---------AVTTRATVSG-LKPGTR 71 (98)
T ss_dssp CCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEE---------ESSSEEEECS-CCTTCE
T ss_pred cCCCCCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeecccccceeeEEec---------CCceEEEECC-CCCCCE
Confidence 578889999999999999999999998888899999999987765433222111 1233455555 999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNT 381 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t 381 (505)
|.|+|+|.|..|.|.+|... .+.|
T Consensus 72 Y~~~V~a~n~~G~g~~S~~v-~~~T 95 (98)
T d1x5la1 72 YVFQVRARTSAGCGRFSQAM-EVET 95 (98)
T ss_dssp EEECEEEEETTEECCCCCCE-EEEC
T ss_pred EEEEEEEEcCCCCcCCCCCE-EEEc
Confidence 99999999999999888764 4444
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.9e-12 Score=92.84 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=60.4
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcE-EEE-----CCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRY-FIQ-----DNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~-~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|.+|+++.|.|.+.|.| .+.|+|+|++..+.... ...+. ... ...|.|.+++ .+|+|.|+|.|.|..|
T Consensus 15 v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G 89 (104)
T d2aw2a1 15 ILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKL----EDRQTSWKEEKNISFFILHFEPVL-PNDNGSYRCSANFQSN 89 (104)
T ss_dssp EETTSCEEEEEEEECSSSCCEEEEEEECSSCEEEC----CSSCEEEEECSSCEEEEEEESSCC-GGGCEEEEEEEEETTE
T ss_pred EeCCCeEEEEEEEEeeCCCCEEEEEecCccccccc----ceeeeeEEecCCceEEEEEEcccc-HHHCCeEEEEEEcCCC
Confidence 45899999999999988 58999999887654221 11111 111 1259999999 9999999999999998
Q ss_pred ceEe-eEEEEEEe
Q psy14886 74 TRYS-SAQLRVLT 85 (505)
Q Consensus 74 ~~~~-~~~l~v~~ 85 (505)
...+ .+.|.|.+
T Consensus 90 ~~~s~~~~l~V~e 102 (104)
T d2aw2a1 90 LIESHSTTLYVTD 102 (104)
T ss_dssp EEECCCEEEEEEC
T ss_pred eEEEEEEEEEEEE
Confidence 7655 67888865
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=7.3e-12 Score=90.80 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe--eC-----CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--EN-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~--~~-----~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.+....|.|.+.|.|.|.+.|+++|+.+..+.+.... .+ ..|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 95 (105)
T d1wwca_ 16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95 (105)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence 4556778899999999999999999998776554332 12 2499999999999999999999999999999998
Q ss_pred EEeCCe
Q psy14886 176 VLHGPS 181 (505)
Q Consensus 176 v~~~p~ 181 (505)
|..+|.
T Consensus 96 V~~~P~ 101 (105)
T d1wwca_ 96 FLKEPF 101 (105)
T ss_dssp CSCCCC
T ss_pred EEeCCC
Confidence 876654
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.28 E-value=1.1e-12 Score=95.09 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=57.7
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+.+.|.|.+ .+.|.+.|.|+||+..+... ...+... .+++|.|.+++ .+|+|.|+|.|.|..|....
T Consensus 16 v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~-----~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~g~~~~ 89 (105)
T d1cs6a2 16 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP-----ADGRRFVSQTTGNLYIAKTE-ASDLGNYSCFATSHIDFITK 89 (105)
T ss_dssp EETTSCEEECCCCCSEESCCEEEEEESSTTCBCC-----CCSSEEECTTTCCEEESSCC-GGGCEEEEEEEEEEETTEEE
T ss_pred EeCCCeEEEEEEccCCCCCCEEEEEEeecccccc-----ccceeeeecCCCEEeecccc-cccCcEEEEEEEECCCCEEE
Confidence 4689999999998 67899999999998876532 2233333 45789999999 99999999999998887654
Q ss_pred e
Q psy14886 78 S 78 (505)
Q Consensus 78 ~ 78 (505)
.
T Consensus 90 ~ 90 (105)
T d1cs6a2 90 S 90 (105)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.28 E-value=5.8e-12 Score=92.46 Aligned_cols=89 Identities=29% Similarity=0.459 Sum_probs=65.3
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC----CCc--EEE------e----eCCCEEEcCCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGR--RKI------F----ENGNLLISPVS 150 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~----~~~--~~~------~----~~~~l~i~~v~ 150 (505)
+|.+... .+.+..+.+|+++.|.|.+.|.|.|+|.|++++..... ... ... . ....|.|.++.
T Consensus 4 ~P~i~~~-~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 82 (109)
T d2fdbp2 4 RPILQAG-LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82 (109)
T ss_dssp CCEECTT-CSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred CCEEcCC-CCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence 4555433 23567899999999999999999999999987654221 100 010 0 12359999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
..|.|.|+|.|.|..|.....+.|.|
T Consensus 83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 83 FEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 99999999999999999999988877
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.3e-12 Score=90.32 Aligned_cols=82 Identities=23% Similarity=0.510 Sum_probs=60.8
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.++|.|.+.|.|.+ .+.|+|++..+..... .....++.+. ..+|.|.++...+|+|.|+|.|.|..|..
T Consensus 14 v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~ 92 (101)
T d3b5ha1 14 INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM-NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 92 (101)
T ss_dssp ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC-TTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE
T ss_pred ECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecc-cCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEE
Confidence 4689999999999998866 7999997643322111 1123455442 24799999972369999999999999998
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 93 ~~~~~L~V 100 (101)
T d3b5ha1 93 QAIITLRV 100 (101)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888877
|
| >d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.1e-11 Score=88.57 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
|.+|.++.+..++.+++.|+|++|.. ++.++..|.++++..+...|....... ....+.+.+ |.+++.|
T Consensus 1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~-L~p~t~Y 70 (96)
T d1x5xa1 1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG---------EDLAYTVKN-LRRSTKY 70 (96)
T ss_dssp CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEE---------SCSEEEEES-CCSSCEE
T ss_pred CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecC---------CCCEEEECC-CCCCCEE
Confidence 56788899999999999999998874 446678888888877666655443222 223455555 9999999
Q ss_pred EEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 358 EFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
.|||+|.|..|.|.+|... .+.|.
T Consensus 71 ~~rV~A~n~~G~s~~S~~~-~~~T~ 94 (96)
T d1x5xa1 71 KFKVIAYNSEGKSNPSEVV-EFTTC 94 (96)
T ss_dssp EEEEEEECSSCEEEECCCE-EEECC
T ss_pred EEEEEEEcCCcEeCCCCCE-EEEeC
Confidence 9999999999999888764 45554
|
| >d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ephrin type-B receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=7.3e-12 Score=89.27 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeE
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~ 358 (505)
|..|..+.+.....++|.|+|++|...++++..|.++++......|....... ....+.+.+ |.|++.|.
T Consensus 1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y~ 70 (95)
T d2djsa1 1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARS---------QTNTARIDG-LRPGMVYV 70 (95)
T ss_dssp CCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEEEEE---------SSSEEEEES-CCTTCEEE
T ss_pred CCCCCccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcceeEeecC---------CccEEEEee-cCCccEEE
Confidence 44555789999999999999999988888999999999987655443322111 223445555 99999999
Q ss_pred EEEEEEcCCCcCCCCCCCCCccCCC
Q psy14886 359 FKVIAGNELGYGEPSSPSPQYNTPA 383 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~~~~~~~t~~ 383 (505)
|+|+|.|..|.|++|... .+.|++
T Consensus 71 ~~V~A~n~~G~g~~S~~~-~~~T~~ 94 (95)
T d2djsa1 71 VQVRARTVAGYGKFSGKM-CFQTLT 94 (95)
T ss_dssp EEEEEEESSCEEEECCCE-EEECCC
T ss_pred EEEEEEcCCCCCCCCCCE-EEEeCC
Confidence 999999999999888765 455543
|
| >d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.7e-11 Score=89.22 Aligned_cols=96 Identities=24% Similarity=0.307 Sum_probs=74.1
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
..|.+|.++.+..+..++|.|+|.+|. +.++++.+|.|.|+..+...|........ ....+.+.+ |.|++
T Consensus 9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-L~p~t 79 (107)
T d1x5fa1 9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHP--------GEMQVTIQN-LMPAT 79 (107)
T ss_dssp CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSST--------TCSEEEECS-CCTTC
T ss_pred CCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCC--------CccEEEecC-CCCCC
Confidence 468889999999999999999999886 45778999999999877665555432221 233444555 99999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
.|.|||.|.|..|.|++|... .+.|.
T Consensus 80 ~Y~~rV~A~n~~G~g~~S~~i-~v~T~ 105 (107)
T d1x5fa1 80 VYIFRVMAQNKHGSGESSAPL-RVETQ 105 (107)
T ss_dssp EEEEEEEEECSSCEEEECCCE-EEECC
T ss_pred EEEEEEEEEeCCCCcCCCCCE-EEECC
Confidence 999999999999999887754 44443
|
| >d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.5e-11 Score=89.06 Aligned_cols=91 Identities=23% Similarity=0.302 Sum_probs=70.6
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCC-----CeEEeeeccccceeeeecCceeeEEeeec
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-----TWFNVSEHVIGKEVDRYTGRKEASIENVL 351 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~~~~~L 351 (505)
+.|++|.++++...+.+++.|+|.+|.+.++++..|.|+|+..... .|....... .....+.+.+ |
T Consensus 1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~-L 71 (103)
T d1qg3a2 1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN--------PKNRMLLIEN-L 71 (103)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECC--------TTCCEEEECC-C
T ss_pred CcCccCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecC--------CCceEEEEee-c
Confidence 3588999999999999999999999998889999999999876532 233221111 1223445555 9
Q ss_pred cCCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 352 VPWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 352 ~~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
.+++.|.|+|+|.|.+|.|+++...
T Consensus 72 ~p~t~Y~~~V~A~n~~G~g~~s~~~ 96 (103)
T d1qg3a2 72 RESQPYRYTVKARNGAGWGPEREAI 96 (103)
T ss_dssp CTTCCEEEEEEEEETTEECCCEEEE
T ss_pred CCCCEEEEEEEEEcCCccCCCcccc
Confidence 9999999999999999999877643
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.27 E-value=5e-12 Score=90.22 Aligned_cols=74 Identities=32% Similarity=0.501 Sum_probs=58.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-CCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQ 80 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~ 80 (505)
+|++++|.|.+.|.|.+.++|+|||.++... ...++... +..|.|..++ .+|+|.|+|.|.|..|...+ .+.
T Consensus 21 ~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~-----~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~N~~G~~~S~~a~ 94 (97)
T d1cs6a1 21 AEEKVTLTCRARANPPATYRWKMNGTELKMG-----PDSRYRLVAGDLVISNPVK-AKDAGSYQCVATNARGTVVSREAS 94 (97)
T ss_dssp SCCEEEECCEEEEESCCEEEEEETTEECCCS-----TTSSEEEETTEEEEESCCH-HHHCEEEEEEEEETTEEEECCCEE
T ss_pred CCCeEEEEEEEEEeCCCEEEEEEeeeeccCC-----CCceEEeeeeeEEEEeccc-ccCCEEEEEEEEECCCEEEEEEEE
Confidence 3578999999999999999999999998743 23444444 4456777788 89999999999999998754 455
Q ss_pred EE
Q psy14886 81 LR 82 (505)
Q Consensus 81 l~ 82 (505)
|.
T Consensus 95 L~ 96 (97)
T d1cs6a1 95 LR 96 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.8e-11 Score=88.91 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=66.5
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeC-CCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTN-WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.|..+.+.....+++.|+|+++...+..+++|.|+|+.. +...|..+..... ....+.+.+ |.+++.|.|
T Consensus 10 ~P~~p~~~~~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~--------~~~~~~l~~-L~p~t~Y~f 80 (106)
T d1cd9b2 10 LDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS--------SKDQFELCG-LHQAPVYTL 80 (106)
T ss_dssp CCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEEEEEEES--------CEEEEEECC-CCSCSCEEE
T ss_pred CCCCCeEecCCCCEEEEEEcCcccCCccceEEEEEEeeccccccceeeecccC--------CceEEEEec-cCCCeEEEE
Confidence 345567777889999999999988888899999999975 4567887654332 233445555 999999999
Q ss_pred EEEEEcCCCcCCCCCCCCCcc
Q psy14886 360 KVIAGNELGYGEPSSPSPQYN 380 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~~~~~~~ 380 (505)
||+|.|..|.|.+|+++..+.
T Consensus 81 rVra~~~~g~g~wS~wS~~~~ 101 (106)
T d1cd9b2 81 QMRCIRSSLPGFWSPWSPGLQ 101 (106)
T ss_dssp EEEEEESSSCCCCCCCCCCEE
T ss_pred EEEEEeCCCCCCCcCCCCCeE
Confidence 999999999999999874444
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.2e-11 Score=88.39 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=62.4
Q ss_pred EEeeCCCeEEEEe------ecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 99 TYAGEGGNVTIFC------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 99 ~~v~~g~~v~l~C------~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
..+..|....|.| .+.+.|.|.|.|++||+++..+.......++.|.|.++..+|+|.|+|.|.|..+.....
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~ 87 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYP 87 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCCEEEE
Confidence 3578899999999 567889999999999999987766666778899999999999999999999887755433
|
| >d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=6.1e-12 Score=93.49 Aligned_cols=92 Identities=27% Similarity=0.415 Sum_probs=70.9
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.+.|.+|.++.+...+.+++.|+|.+|...++++.+|.|+|+......+........ .....+.+.+ |.+++
T Consensus 18 ~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~-------~~~~~~~i~~-L~p~t 89 (117)
T d1wfoa1 18 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLA-------PSARQYTATG-LKPES 89 (117)
T ss_dssp CCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEEC-------TTCCEEEEES-CCSSS
T ss_pred CCCCcCCCCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEEecC-------CceEEEEECC-CCCCC
Confidence 456889999999999999999999999887889999999998776543322111111 1223445555 99999
Q ss_pred eeEEEEEEEcCCCcCCCCCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSP 375 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~ 375 (505)
.|.|+|+|.|..|.|++|..
T Consensus 90 ~Y~~~V~A~n~~G~g~~S~~ 109 (117)
T d1wfoa1 90 VYLFRITAQTRKGWGEAAEA 109 (117)
T ss_dssp EEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEEEEECCCcCCCCcCC
Confidence 99999999999999987765
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.26 E-value=4.4e-12 Score=91.82 Aligned_cols=81 Identities=27% Similarity=0.357 Sum_probs=63.2
Q ss_pred ccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecC--CCcE-EEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 90 FKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS--GGRR-KIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 90 ~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~--~~~~-~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
|...+ ...+.+.+|+++.|.|.+ .+.|.+.+.|+++|..+.. ..+. ....+++|.|.++..+|+|.|+|.|.|..
T Consensus 6 F~~~~-~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 84 (105)
T d1cs6a2 6 FSAEE-RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHI 84 (105)
T ss_dssp CCSSC-CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred ccCCC-CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECC
Confidence 44444 245779999999999997 6788999999999876542 2333 33456789999999999999999999988
Q ss_pred Cceeee
Q psy14886 166 GMDESK 171 (505)
Q Consensus 166 g~~~~~ 171 (505)
|.....
T Consensus 85 g~~~~~ 90 (105)
T d1cs6a2 85 DFITKS 90 (105)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 876654
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.6e-11 Score=90.44 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=66.2
Q ss_pred ceEEeeCCCeEEEEeecCCCC---CCeEEEEECCEEec---CCCcEEEee---------CCCEEEcCCCCCCCEEEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNIIG---SGGRRKIFE---------NGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p---~~~i~W~~~g~~~~---~~~~~~~~~---------~~~l~i~~v~~~d~G~y~C~~ 161 (505)
.+..+.+|++++|.|.+.|.| .|+|.|++++.... ...+..... ...|.|.+++..|+|.|+|.|
T Consensus 8 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 87 (113)
T d2dava1 8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV 87 (113)
T ss_dssp CCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEE
T ss_pred ceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEE
Confidence 456799999999999999987 57999999864321 122222211 124999999999999999999
Q ss_pred EcCCCceeeeEEEEEEeCCe
Q psy14886 162 TNVHGMDESKGRLIVLHGPS 181 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~~p~ 181 (505)
.|..|.....+.|.|..++.
T Consensus 88 ~N~~G~~~~~~~L~V~~~~~ 107 (113)
T d2dava1 88 TYKDKFDSCSFDLEVHESTG 107 (113)
T ss_dssp ECSSCEEEECCEEEEECCCC
T ss_pred EeCCCEEEEEEEEEEEcCCC
Confidence 99999999999999976544
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=6.3e-13 Score=96.71 Aligned_cols=82 Identities=23% Similarity=0.440 Sum_probs=60.8
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCC--CCCcE--EEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLE--DQDRY--FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|.+|++++|.|.+ .|.|.+.+.|+|++..+........ ...+. ....+.|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 14 v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~-~~D~G~Y~C~a~N~~G~~ 92 (104)
T d1nbqa2 14 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS-ASDTGEYSCEARNGYGTP 92 (104)
T ss_dssp EETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCC-GGGCCCEEEEEECSSSCC
T ss_pred EecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCC-cccCcEEEEEEEECCCce
Confidence 4589999999998 4789999999999998864421111 11111 1234689999999 999999999999999987
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
..++.+.|
T Consensus 93 ~~s~~v~v 100 (104)
T d1nbqa2 93 MTSNAVRM 100 (104)
T ss_dssp EECCCBCC
T ss_pred EEEEEEEE
Confidence 76544443
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.6e-11 Score=90.02 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=60.1
Q ss_pred EeeCCCeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEE-----------eeCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 100 YAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKI-----------FENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~-----------~~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
.+.+|+++.|.|.+. |.|.+.+.|++++..+........ .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 92 (110)
T d1f97a2 13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 92 (110)
T ss_dssp EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence 478999999999985 789999999999988754322111 12336999999999999999999999997
Q ss_pred eeee--EEEEEEe
Q psy14886 168 DESK--GRLIVLH 178 (505)
Q Consensus 168 ~~~~--~~l~v~~ 178 (505)
...+ +.|.|.+
T Consensus 93 ~~~s~~v~l~V~~ 105 (110)
T d1f97a2 93 AMRSEAAHMDAVE 105 (110)
T ss_dssp CEECCCEEEEEES
T ss_pred EEEEEEEEEEEEe
Confidence 7654 5566543
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.5e-12 Score=90.82 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=63.4
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee-C---------CCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-N---------GNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~-~---------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
++....|.|.+.|.|.|.+.|+++|+.+..+.+..... . ..|.|.++...|.|.|+|.|.|..|.....+
T Consensus 14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i 93 (107)
T d1he7a_ 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (107)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence 33444566689999999999999999987655443321 1 2399999999999999999999999999999
Q ss_pred EEEEEeCCe
Q psy14886 173 RLIVLHGPS 181 (505)
Q Consensus 173 ~l~v~~~p~ 181 (505)
.|.|..+|.
T Consensus 94 ~v~v~~~P~ 102 (107)
T d1he7a_ 94 MAAFMDNPF 102 (107)
T ss_dssp EECCCSCTT
T ss_pred EEEEEcCCC
Confidence 998877764
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.6e-11 Score=90.00 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=67.4
Q ss_pred CCCCCceeeeec--cccccEEEEEEeCCcc-ccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEE
Q psy14886 386 PYQAPSRIGGGG--GKIGDLSISWEPLPRE-KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462 (505)
Q Consensus 386 p~~~P~~~~~~~--~~~~~v~l~W~~~~~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~ 462 (505)
-|.||.++++.. ...++|.|+|++|... ...+.+..|.++|+..+...|...... ..+.+.|.+|.+++.|.
T Consensus 7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----~~~~~~i~~L~~~t~Y~ 81 (109)
T d1uc6a_ 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELS-----NGTAHTITDAYAGKEYI 81 (109)
T ss_dssp CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEES-----SCSEEEETTCCSSSCEE
T ss_pred ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccC-----CceeEEeCCCCCCCEEE
Confidence 356899998853 3568899999985432 344566899999999988888755432 23568899999999999
Q ss_pred EEEEEecCCCC---CCCCceEEE
Q psy14886 463 VKVQAINDVGP---GPESEVVTI 482 (505)
Q Consensus 463 ~~v~a~n~~G~---g~~s~~~~~ 482 (505)
|||+|.|. |. |++|+.+..
T Consensus 82 ~rVrA~~~-~~g~wS~WS~~~~~ 103 (109)
T d1uc6a_ 82 IQVAAKDN-EIGTWSDWSVAAHA 103 (109)
T ss_dssp EEEECCBS-SSCCCCCCCEEEEE
T ss_pred EEEEEEEC-CCCCcCCCCCCEEe
Confidence 99999886 44 455555544
|
| >d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-6 receptor alpha chain, domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.2e-11 Score=85.78 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=72.2
Q ss_pred CCCCCCceEEEEEe--CCeEEEEeecCC--CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 278 PPGLPGGVQVVEVH--KTSATIQWTDGA--TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 278 ~p~~p~~~~~~~~~--~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
.|.+|.++.+..+. .+.+.|+|++|. +.+..+..|.|+|+......|........ ...+.+ .+|.+
T Consensus 1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~---------~~~~~i-~~L~p 70 (104)
T d1n26a3 1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL---------QHHCVI-HDAWS 70 (104)
T ss_dssp CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGG---------CSEEEE-SSCCT
T ss_pred CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccc---------eEEEEE-CCCCC
Confidence 48899998887764 467999999986 34567889999999998888887654322 223444 45999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCc
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQY 379 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~ 379 (505)
++.|.|||+|.|..|.|.+|+++..+
T Consensus 71 ~t~Y~~rVra~n~~g~g~wSewS~~~ 96 (104)
T d1n26a3 71 GLRHVVQLRAQEEFGQGEWSEWSPEA 96 (104)
T ss_dssp TCCEEEEEEEEETTTBSCCCCCCCCE
T ss_pred CCEEEEEEEEEeCCCccCCcCCcCCE
Confidence 99999999999999999999886443
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=8.6e-12 Score=87.38 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=57.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--EC--CeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QD--NVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+. .|.+.+.|+|++.++..+ ...++.. .+ .+|.|.+++ .+|+|.|+|.|.| ..
T Consensus 12 v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n----~~ 80 (90)
T d1x44a1 12 AYCGERVELECEVS-EDDANVKWFKNGEEIIPG-----PKSRYRIRVEGKKHILIIEGAT-KADAAEYSVMTTG----GQ 80 (90)
T ss_dssp EETTEEEEEEEECS-SSSCCCEEEETTEECCCS-----TTCSEEEEEETTEEEEEEEEEC-TTTCSEEEEEETT----EE
T ss_pred EeCCCcEEEEEEEC-CCCceEEEEEeecccCCC-----CCccEEEEEeCCccEEEECccc-cccCEEEEEEEec----ce
Confidence 36899999999994 588899999999988743 2233433 22 379999999 9999999999866 45
Q ss_pred eeEEEEEE
Q psy14886 77 SSAQLRVL 84 (505)
Q Consensus 77 ~~~~l~v~ 84 (505)
.++.|.|.
T Consensus 81 ~~a~l~V~ 88 (90)
T d1x44a1 81 SSAKLSVD 88 (90)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 56777775
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.24 E-value=2.3e-12 Score=92.01 Aligned_cols=87 Identities=31% Similarity=0.587 Sum_probs=63.2
Q ss_pred CCCccCCCCCceEEeeC---CCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGE---GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~---g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
+|.|...| .+..+.+ ++++.|.|.+.|.|.+.+.|+++|..+.... ......+..|.|..+..+|+|.|+|.|
T Consensus 4 ~P~f~~~P--~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 81 (97)
T d1cs6a1 4 GPVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81 (97)
T ss_dssp EEEEEECC--CCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred CCEEEEeC--CCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEE
Confidence 34554444 2334444 4799999999999999999999999986433 233333345777888899999999999
Q ss_pred EcCCCceee-eEEEE
Q psy14886 162 TNVHGMDES-KGRLI 175 (505)
Q Consensus 162 ~~~~g~~~~-~~~l~ 175 (505)
.|..|...+ .+.|.
T Consensus 82 ~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 82 TNARGTVVSREASLR 96 (97)
T ss_dssp EETTEEEECCCEEEE
T ss_pred EECCCEEEEEEEEEe
Confidence 999997644 45553
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.3e-11 Score=89.02 Aligned_cols=86 Identities=9% Similarity=0.048 Sum_probs=65.0
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEE-------EeeecCceeeEEEEcCCcccee
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE-------TLKEYGNVGIAVVRIPSEFYYT 459 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~L~p~~ 459 (505)
|.+|.++++...+.+++.|.|+++ .+.+.+|.|+|+..+...+... ...... ....+.|.+|.|++
T Consensus 4 Pp~~~~l~v~~~t~~sv~v~W~pp-----~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~L~p~t 76 (101)
T d2cuia1 4 RPRLSQLSVTDVTTSSLRLNWEAP-----PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPG--TRHSAVLRDLRSGT 76 (101)
T ss_dssp CCCCCCCEEESCCSSCEEEECCCC-----TTSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEET--TCCEEEECSCCTTC
T ss_pred ccCCCCcEEEEECCCEEEEEEEec-----cccccceEEEEEecCCCceeeccCCcceeEeeccc--ceeEEEeCCCCcCC
Confidence 347889999999999999999873 2568999999998762221111 111111 34577899999999
Q ss_pred eEEEEEEEecCCCCCCCCce
Q psy14886 460 EYEVKVQAINDVGPGPESEV 479 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~g~~s~~ 479 (505)
.|.|+|.|+|..|.|+++..
T Consensus 77 ~Y~~~V~a~~~~g~g~~~~~ 96 (101)
T d2cuia1 77 LYSLTLYGLRGPHKADSIQG 96 (101)
T ss_dssp EEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEEEeCCcEeCCeEE
Confidence 99999999999999997654
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=4e-11 Score=87.00 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=67.5
Q ss_pred CCCCCceeeeecc-ccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEE
Q psy14886 386 PYQAPSRIGGGGG-KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464 (505)
Q Consensus 386 p~~~P~~~~~~~~-~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~ 464 (505)
.+.||.++++... +.+.+.|.|.+| ....++.++.|.|+|+..+...+..... ...+ .+.+.|.+|.|++.|.|+
T Consensus 4 k~dPP~nl~v~~~~~~~~l~v~W~~P-~~~~~~~~~~Y~v~y~~~~~~~~~~~~~-~~~~--~t~~~i~~L~p~t~Y~~r 79 (105)
T d1erna2 4 LLDAPVGLVARLADESGHVVLRWLPP-PETPMTSHIRYEVDVSAGNGAGSVQRVE-ILEG--RTECVLSNLRGRTRYTFA 79 (105)
T ss_dssp CCCCCEEEEEEECCC-CCEEEEEECS-SSCSCGGGEEEEEEEEEC-CCCEEEEEE-ECTT--CCEEEECSCCSSCEEEEE
T ss_pred ccCCCCCCEEEEecCCCcEEEEeeec-cccccceEEEEEEEEecCCCCCceEEEe-ecCC--ccEEEEeCCCCCcEEEEE
Confidence 3568999998755 456799999984 5667778889999999987554443332 2232 256789999999999999
Q ss_pred EEEecCC--CCC---CCCceEEEee
Q psy14886 465 VQAINDV--GPG---PESEVVTIWH 484 (505)
Q Consensus 465 v~a~n~~--G~g---~~s~~~~~~t 484 (505)
|+|.+.. |.| ++|+.+.+.|
T Consensus 80 VRar~~~~~~~G~WSeWS~~v~~~t 104 (105)
T d1erna2 80 VRARMAEPSFGGFWSAWSEPVSLLT 104 (105)
T ss_dssp EEEEECSSSCCBCCCCCCCCEEEEC
T ss_pred EEEEECCCCCCCCCCCCCCCEEeeC
Confidence 9998653 444 5555566655
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.8e-13 Score=96.82 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=62.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE-EEeeCCCEEEcCCCCCCCE-EEEEEEEcCCCceeeeEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSG-IYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~-~~~~~~~l~i~~v~~~d~G-~y~C~~~~~~g~~~~~~~l~ 175 (505)
+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... .......|.|.++..+|.| .|+|.|.|..|.....+.|.
T Consensus 11 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~ 90 (92)
T d2ifga1 11 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90 (92)
T ss_dssp SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence 345889999999999999999999999998766432111 1122346999999999999 69999999999988877665
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 91 V 91 (92)
T d2ifga1 91 V 91 (92)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.24 E-value=1.5e-11 Score=87.68 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=62.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCC-CeEEEEE-CCEEecC-CCcEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIGS-GGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~-~g~~~~~-~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
....+..|+++.|.|.+.|.|. +.+.|++ +|..+.. ..++.... ..+|.|.++..+|+|.|+|.|.|..|...
T Consensus 8 ~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 87 (97)
T d1epfa1 8 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQS 87 (97)
T ss_dssp SSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEE
T ss_pred CCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEE
Confidence 3466889999999999999875 6999999 5565543 33444332 23599999999999999999999998653
Q ss_pred -eeEEEEEE
Q psy14886 170 -SKGRLIVL 177 (505)
Q Consensus 170 -~~~~l~v~ 177 (505)
..+.|.|.
T Consensus 88 ~~tv~l~V~ 96 (97)
T d1epfa1 88 EATVNVKIF 96 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 45677664
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.2e-11 Score=89.17 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=64.7
Q ss_pred ceEEeeCCCeEEEEeecCCCC---CCeEEEEECCEEecC---CCcEEEee---------CCCEEEcCCCCCCCEEEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNIIGS---GGRRKIFE---------NGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p---~~~i~W~~~g~~~~~---~~~~~~~~---------~~~l~i~~v~~~d~G~y~C~~ 161 (505)
.+..+.+|++++|.|.+.|.| .|.|.|++++..... ..+..... ...|.|.+++..|+|.|+|.|
T Consensus 12 ~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 91 (110)
T d2avga1 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEV 91 (110)
T ss_dssp CCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEE
T ss_pred CeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEE
Confidence 457799999999999999988 578999998754321 11222111 124999999999999999999
Q ss_pred EcCCCceeeeEEEEEEe
Q psy14886 162 TNVHGMDESKGRLIVLH 178 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~ 178 (505)
.|..|.....+.|.|..
T Consensus 92 ~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 92 STKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EETTEEEEEEEEEEEES
T ss_pred EECCCeEEEEEEEEEEe
Confidence 99999999999999854
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=7.1e-12 Score=96.13 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=68.1
Q ss_pred CceeeeeccccccEEEEEEeCCccccCC--------CCceEEEEEEEcCC-CCcEEEEeeecCceeeEEEEcCCccceee
Q psy14886 390 PSRIGGGGGKIGDLSISWEPLPREKQNA--------PNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYYTE 460 (505)
Q Consensus 390 P~~~~~~~~~~~~v~l~W~~~~~~~~~~--------~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~p~~~ 460 (505)
|....+...+.+++.|.|++|.. ..++ .+..|.|+++..+. ..|... ... ....+.|.+|.|++.
T Consensus 21 ~~~P~V~~v~~~sv~l~W~~P~~-~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~----~~~~~~i~~L~P~t~ 94 (137)
T d1wk0a_ 21 IVKPVASDIQARTVVLTWSPPSS-LINGETDESSVPELYGYEVLISSTGKDGKYKSV-YVG----EETNITLNDLKPAMD 94 (137)
T ss_dssp CCCCEEESCCSSCEEEECCCCCC-CSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEE-EEE----SCSEEEECSCCTTCE
T ss_pred CCCCEEEEeEcCEEEEEEeCcCc-CCCceeeccccceEEeeEEEEeeCCCCccEEEE-Eec----CccEEEECCCCCCcE
Confidence 33446777889999999998432 2222 46678998887653 334322 222 345789999999999
Q ss_pred EEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 461 YEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 461 Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|.|+|+|+|..|.|++|+.+.+.|.+
T Consensus 95 Y~f~V~A~n~~G~g~~S~~~~~~T~~ 120 (137)
T d1wk0a_ 95 YHAKVQAEYNSIKGTPSEAEIFTTLS 120 (137)
T ss_dssp ECEEEEEEETTEECCCCCCCCEECCC
T ss_pred EEEEEEEEcCCcccCCCCCEEEECCC
Confidence 99999999999999999999998864
|
| >d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase F, PTPRF species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2.2e-11 Score=86.44 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeE
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~ 358 (505)
|++|. +.+.....+++.|+|++|.+.++++.+|.|+|+..+...|....... ....+.+.+ |.+++.|.
T Consensus 1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y~ 69 (94)
T d2dn7a1 1 PGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGK---------DDQHFTVTG-LHKGTTYI 69 (94)
T ss_dssp CCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEEEET---------TCCEEEEEC-CCTTCEEE
T ss_pred CCCCc-EeEEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCCCcEEEEcCC---------CccEEEEEc-cCCeeEEE
Confidence 55665 55667788999999999988888999999999998877777653322 233445554 99999999
Q ss_pred EEEEEEcCCCcCCCCCC
Q psy14886 359 FKVIAGNELGYGEPSSP 375 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~~ 375 (505)
|+|+|.|..|.|+++..
T Consensus 70 ~~V~A~n~~G~g~~s~~ 86 (94)
T d2dn7a1 70 FRLAAKNRAGLGEEFEK 86 (94)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEEcCCcCCCCccE
Confidence 99999999999987653
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.4e-12 Score=92.72 Aligned_cols=85 Identities=26% Similarity=0.501 Sum_probs=64.0
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEE----------eeCCCEEEcCCCCCCCE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKI----------FENGNLLISPVSRDDSG 155 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~----------~~~~~l~i~~v~~~d~G 155 (505)
||.+..... ...+.+|++++|.|.+ .|.|.+.+.|+++|..+....+... ...+.|.|.++..+|.|
T Consensus 2 PP~~p~~~~--~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G 79 (104)
T d1nbqa2 2 PPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 79 (104)
T ss_dssp CCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC
T ss_pred CCcccccCC--CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCc
Confidence 555544432 2457899999999998 5789999999999988754332211 11246999999999999
Q ss_pred EEEEEEEcCCCceeeeEE
Q psy14886 156 IYSCTATNVHGMDESKGR 173 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~ 173 (505)
.|+|.|.|..|....++.
T Consensus 80 ~Y~C~a~N~~G~~~~s~~ 97 (104)
T d1nbqa2 80 EYSCEARNGYGTPMTSNA 97 (104)
T ss_dssp CEEEEEECSSSCCEECCC
T ss_pred EEEEEEEECCCceEEEEE
Confidence 999999999998866543
|
| >d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.5e-11 Score=87.29 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCC-CCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW-NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.|..+.+...+.++|.|+|.++...+..+.+|.|+|+... ...|........ ....+.+. +|.+++.|.|
T Consensus 9 ~P~~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~--------~~~~~~i~-~L~p~t~Y~f 79 (105)
T d2d9qb2 9 MDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPL--------EALQYELC-GLLPATAYTL 79 (105)
T ss_dssp CCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECS--------CEEEEEEC-SCCSCCCEEE
T ss_pred CCCCCEeecCCCCeEEEEEcCCCCCCceeEEEEEEEEecCCccceeeeecccC--------CcceeEEe-cccCCeEEEE
Confidence 4556677788899999999999877888999999999765 456665432211 22334444 4999999999
Q ss_pred EEEEEcCCCcCCCCCCCCC
Q psy14886 360 KVIAGNELGYGEPSSPSPQ 378 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~~~~~ 378 (505)
||+|.|..|.|.+|+++..
T Consensus 80 rVra~n~~g~G~~S~wS~~ 98 (105)
T d2d9qb2 80 QIRCIRWPLPGHWSDWSPS 98 (105)
T ss_dssp EEEEEECSSCCCCCCCCCC
T ss_pred EEEEEeCCCCCCCcCCCCC
Confidence 9999999999998888633
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.4e-11 Score=89.80 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=60.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCC---------CCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLE---------DQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~---------~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~ 70 (505)
|..|++++|.|.+.+.|.+.+.|++||..+........ .........+.|.|.+++ .+|.| .|+|.|.|
T Consensus 14 v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~g~~Y~C~A~N 92 (107)
T d1iray3 14 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE-SRFYKHPFTCFAKN 92 (107)
T ss_dssp CCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC-GGGGSSCEEEEEEC
T ss_pred EeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecc-hHHCCcEEEEEEEe
Confidence 56899999999999999999999999998864321000 000000012479999999 99999 59999999
Q ss_pred ccCceEeeEEEE
Q psy14886 71 QLKTRYSSAQLR 82 (505)
Q Consensus 71 ~~~~~~~~~~l~ 82 (505)
..|.....+.|.
T Consensus 93 ~~G~~~~~i~L~ 104 (107)
T d1iray3 93 THGIDAAYIQLI 104 (107)
T ss_dssp SSCEEEEEEEEE
T ss_pred CCCeEEEEEEEE
Confidence 999887666654
|
| >d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=8.9e-11 Score=85.47 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=65.9
Q ss_pred CCCCCCCceE-EEEEeCCeEEEEeecCCCC-CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 277 GPPGLPGGVQ-VVEVHKTSATIQWTDGATN-GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 277 ~~p~~p~~~~-~~~~~~~~v~l~w~~~~~~-~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
+.|++|..+. +..+..+++.|+|.+|... +.++..|.++++......|...... .....+...+|.++
T Consensus 9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~----------~~~~~~~i~~L~p~ 78 (107)
T d2crma1 9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS----------GATREHLCDRLNPG 78 (107)
T ss_dssp CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC----------SSCSEEEECSCCTT
T ss_pred CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeec----------CCccEEEEeccCCC
Confidence 4677777654 4567889999999988744 5688999999987765444332222 12233444459999
Q ss_pred ceeEEEEEEEcCCCcCCCCCCC
Q psy14886 355 STYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
+.|.|||+|.|..|.|++|...
T Consensus 79 t~Y~~rV~A~n~~G~s~~S~~v 100 (107)
T d2crma1 79 CFYRLRVYCISDGGQSAVSESL 100 (107)
T ss_dssp SCEEEEEEEEETTEECCCCCCC
T ss_pred CEEEEEEEEECCCcCcCCCCcE
Confidence 9999999999999999988764
|
| >d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neuroglian, two amino proximal Fn3 repeats species: Drosophila melanogaster [TaxId: 7227]
Probab=99.22 E-value=3.7e-11 Score=87.08 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=68.9
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCC--CCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGA--TNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
|+.+|.++++.....+++.|+|+++. ..++++.+|.|.|+..+. ..|........ ....+.+.+ |.++
T Consensus 4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~--------~~~~~~i~~-L~p~ 74 (105)
T d1cfba2 4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDW--------RQNNIVIAD-QPTF 74 (105)
T ss_dssp CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCT--------TCCEEEECS-CCSS
T ss_pred CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCC--------CccEEEECC-CCCC
Confidence 44678899999999999999999754 456789999999988764 44554332111 233445554 9999
Q ss_pred ceeEEEEEEEcCCCcCCCCCCC
Q psy14886 355 STYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
+.|.|+|+|.|..|.|++|...
T Consensus 75 t~Y~~~V~A~N~~G~gp~S~~~ 96 (105)
T d1cfba2 75 VKYLIKVVAINDRGESNVAAEE 96 (105)
T ss_dssp CEEEEEEEEEETTEECSSCCCC
T ss_pred CEEEEEEEEEeCCcCCCCCCCc
Confidence 9999999999999999988764
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6e-12 Score=88.96 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=55.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEEC--CeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD--NVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|+++.|.|.+. .|.+.++|+|||..|..+. ....+...+ .+|.|.+++ .+|+|.|+|.|.| ...+
T Consensus 18 v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~----~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~n----~~~s 87 (94)
T d1pd6a_ 18 VSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSG----SKYIFESIGAKRTLTISQCS-LADDAAYQCVVGG----EKCS 87 (94)
T ss_dssp EETTSCEEEEEECS-SSSSCCEEEESSSEECCCS----SSSEEEEETTEEEEEECSCS-SSSCEEEEEEETT----EEEC
T ss_pred ECcCCeEEEEEEEC-CCCceEEEEEcCccceeee----eeEeeeccCCeEEeecCCCC-ceecEEEEEEEee----EEEE
Confidence 46899999999995 4888999999999986421 111222233 369999999 9999999999865 4455
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 88 ~~l~V~ 93 (94)
T d1pd6a_ 88 TELFVK 93 (94)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 667665
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.4e-12 Score=92.37 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=62.5
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC-----------CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----------GGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~-----------~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
++.+.+.+|+++.|.|.+.|.|.|.+.|++++..+.. ........+++|.|.++..+|+|.|+|.|.|.
T Consensus 11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 90 (105)
T d1nbqa1 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90 (105)
T ss_dssp CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence 3456688999999999999999999999996543321 01111223457999999999999999999999
Q ss_pred CCceeeeEEEEE
Q psy14886 165 HGMDESKGRLIV 176 (505)
Q Consensus 165 ~g~~~~~~~l~v 176 (505)
.|.....+.+.|
T Consensus 91 ~G~~~~~~~v~v 102 (105)
T d1nbqa1 91 GGNSYGEVKVKL 102 (105)
T ss_dssp TSSCEECCEEEC
T ss_pred CCCEEEEEEEEE
Confidence 999887766654
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.5e-11 Score=87.01 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=62.4
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEec---CCCcEEEeeCC-----CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIG---SGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~---~~~~~~~~~~~-----~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
....+..|+++.|.|.+.|.| .|.|+|+|++..+. ..........+ .|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 90 (104)
T d2aw2a1 11 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 90 (104)
T ss_dssp EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCe
Confidence 556799999999999999998 48999999776542 11122222222 3999999999999999999999997
Q ss_pred eee-eEEEEEEe
Q psy14886 168 DES-KGRLIVLH 178 (505)
Q Consensus 168 ~~~-~~~l~v~~ 178 (505)
... .+.|.|.+
T Consensus 91 ~~s~~~~l~V~e 102 (104)
T d2aw2a1 91 IESHSTTLYVTD 102 (104)
T ss_dssp EECCCEEEEEEC
T ss_pred EEEEEEEEEEEE
Confidence 654 57777743
|
| >d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1355 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=4.6e-11 Score=87.03 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=71.0
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
.+.||.++.+ ....++|.|+|++|...+.++.+|.++|+.. ...|......+. .....+.+.+|.+++.|
T Consensus 7 ~~sPP~~~~~-~~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~-~~~~~~~~~~~~--------~~~~~~~i~~L~p~t~Y 76 (108)
T d1v5ja_ 7 GLSPPRGLVA-VRTPRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVA--------GTETELLVPGLIKDVLY 76 (108)
T ss_dssp CCCCCEEEEE-EECSSSEEEEEECCSCCSSCCCBEEEEEEET-TCCCEEEEEEEC--------SSCCEEECCCCCTTSCE
T ss_pred CCCcCCCeEE-EEcCCEEEEEEEecccCCCceeEEEEEeeee-eeeeeecccccc--------ceeeeEEEEeccCCcEE
Confidence 4677888876 5578899999999988888899999999876 455655443332 33344444459999999
Q ss_pred EEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 358 EFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
.|||+|.|..|.|.+|... .+.|.
T Consensus 77 ~~rV~A~n~~g~s~~S~~~-~~~T~ 100 (108)
T d1v5ja_ 77 EFRLVAFAGSFVSDPSNTA-NVSTS 100 (108)
T ss_dssp ECCBEEEETTEEEEECSCC-CCCCS
T ss_pred EEEEEEEeCCCEeCCcCce-EEECC
Confidence 9999999999999988764 44443
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.19 E-value=6.2e-12 Score=91.59 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=62.4
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCe---EEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPA---MYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G---~Y~C~~~~~~~~~ 75 (505)
+.||++++|.|.+ .|.|.+.+.|+|++..+...........++.. .+++|.|.+++ .+|+| .|+|.|.|..|..
T Consensus 14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~gd~g~Y~C~A~N~~g~~ 92 (111)
T d1biha2 14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT-KEDVSDIYKYVCTAKNAAVDE 92 (111)
T ss_dssp CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEEC-GGGCCSSEEEEEEEECTTCSS
T ss_pred ccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeE-eeccCCceEEEEEEEeCCCCc
Confidence 3589999999997 89999999999987766543322223344544 46789999999 88877 6999999999877
Q ss_pred EeeEEEEEE
Q psy14886 76 YSSAQLRVL 84 (505)
Q Consensus 76 ~~~~~l~v~ 84 (505)
.....+.+.
T Consensus 93 ~~~~~~~~i 101 (111)
T d1biha2 93 EVVLVEYEI 101 (111)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 655444443
|
| >d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2e-11 Score=88.06 Aligned_cols=94 Identities=20% Similarity=0.317 Sum_probs=71.1
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.+.|.+|.++++...+.+++.|+|++|. ++++.+|.|+|+......|...... ....+.+.+ |.|++
T Consensus 8 ~~vP~~P~~~~~~~~~~~si~l~W~~p~--~~~i~~Y~i~y~~~~~~~~~~~~~~----------~~~~~~i~~-L~p~t 74 (102)
T d1x5za1 8 TGVPGQPLNFKAEPESETSILLSWTPPR--SDTIANYELVYKDGEHGEEQRITIE----------PGTSYRLQG-LKPNS 74 (102)
T ss_dssp SCCCCCCEEEEEECSSSSEEEEEEECCS--CCCCCEEEECBEESSSCCCBCCEEC----------SSSEEEEEC-CCTTC
T ss_pred CCCCcCCCCeEEEEccCCEEEEEEECCC--CCCccceEEEEEeCCCCceEEEEcC----------CcCEEEECC-CCCCC
Confidence 3567888899999999999999999875 3468999999988765554433221 223455555 99999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPA 383 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~ 383 (505)
.|.|+|.|.|..|.|++|... .++|.+
T Consensus 75 ~Y~~~V~A~n~~G~g~~S~~v-~~~T~e 101 (102)
T d1x5za1 75 LYYFRLAARSPQGLGASTAEI-SARTMQ 101 (102)
T ss_dssp EEEECEEEECSSCEEEECCCE-EEECCC
T ss_pred EEEEEEEEEcCCCEeCCCCCE-EEEcCC
Confidence 999999999999999887764 455543
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.19 E-value=1.7e-11 Score=84.61 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=56.3
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
....+.+|++++|.|.+.+.|.+ .+.|++||..+... ++.|.|.++..+|+|.|+|.+.|..+. ..+.|.
T Consensus 12 ~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-------~~~l~i~~v~~~dsG~Y~C~a~ns~~S--~~v~l~ 82 (85)
T d2fcba1 12 QWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-------TQPSYRFKANNNDSGEYTCQTGQTSLS--DPVHLT 82 (85)
T ss_dssp CCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-------CSSEEEEECCGGGCEEEEEECTTSBCC--CCEEEE
T ss_pred CCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc-------ccceEEeeccccCCcEEEEECCCCccc--ccEEEE
Confidence 44568899999999999988765 78899999888643 457999999999999999999875432 334555
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 83 V 83 (85)
T d2fcba1 83 V 83 (85)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.9e-11 Score=90.56 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=76.9
Q ss_pred CCCCCCceEEEE--EeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 278 PPGLPGGVQVVE--VHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 278 ~p~~p~~~~~~~--~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.|.+|.++.+.. ....++.|+|+++.+.++.+..|.|+|+......|........ .+....+.+.+|.+++
T Consensus 4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~-------~~~~~~~~i~~L~~~t 76 (115)
T d1bqua2 4 KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDT-------ASTRSSFTVQDLKPFT 76 (115)
T ss_dssp ECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGG-------CSCCSEEEECSCCSSE
T ss_pred ECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeeccccccc-------cccccEEeeCCCccCc
Confidence 477888777753 5678899999998877888999999999988887766533221 1233344445599999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCC--CccCCCCCCCCCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSP--QYNTPADKPYQAP 390 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~--~~~t~~~~p~~~P 390 (505)
.|.|+|+|.|..|.|.+|.++. .+.|.+..|..+|
T Consensus 77 ~Y~~~V~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~P 113 (115)
T d1bqua2 77 EYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 113 (115)
T ss_dssp EEEEEEEEEETTSCSCCCCCCCCEEEEECCCHHHHHH
T ss_pred EEEEEEEEEeCCCccCCcCCcCCEEEECCCCCCCCCc
Confidence 9999999999999998877653 3445555554433
|
| >d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Hedgehog receptor iHog species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.18 E-value=5.3e-11 Score=84.51 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=66.2
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCC-CCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~-~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
.|+.+|..+.+..++.++|.|+|++|. ..+.++.+|.|.|+.... ..|....... .....+.+.+|.|+
T Consensus 5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~---------~~~~~~~i~~L~p~ 75 (95)
T d2ibga1 5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG---------AHARSFKIAPLETA 75 (95)
T ss_dssp CCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEEC---------TTCCEEEECSCCTT
T ss_pred CCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccC---------CceeEEEEeeccCC
Confidence 345567788888899999999999775 445778999999997654 4455432211 22333444449999
Q ss_pred ceeEEEEEEEcCCCcCCCCC
Q psy14886 355 STYEFKVIAGNELGYGEPSS 374 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~ 374 (505)
+.|.|+|.|.|..|.|++|.
T Consensus 76 t~Y~~~V~A~n~~G~s~~Ss 95 (95)
T d2ibga1 76 TMYEFKLQSFSAASASEFSA 95 (95)
T ss_dssp CEEEEEEEEECSSCBCCCCC
T ss_pred eEEEEEEEEEeCCccCCCCC
Confidence 99999999999999998763
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.4e-11 Score=88.55 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=63.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-----e----------CCCEEEcCCCCCCCEE-EEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-----E----------NGNLLISPVSRDDSGI-YSCT 160 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-----~----------~~~l~i~~v~~~d~G~-y~C~ 160 (505)
..+.+..|+++.|.|.+.+.|.+.+.|+++|..+......... . ...|.|.+++..|.|. |+|.
T Consensus 10 ~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~ 89 (107)
T d1iray3 10 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCF 89 (107)
T ss_dssp EEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEE
T ss_pred CEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEE
Confidence 4466788999999999999999999999999988643321110 0 1259999999999994 9999
Q ss_pred EEcCCCceeeeEEEE
Q psy14886 161 ATNVHGMDESKGRLI 175 (505)
Q Consensus 161 ~~~~~g~~~~~~~l~ 175 (505)
|.|..|.....+.|.
T Consensus 90 A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 90 AKNTHGIDAAYIQLI 104 (107)
T ss_dssp EECSSCEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEE
Confidence 999999988877775
|
| >d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Host cell factor 2, HCF-2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=5.4e-11 Score=89.03 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCe-------EEeeeccccceeeeecCceeeEEee
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW-------FNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w-------~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
..|.+|.++.+.. ..+++.|+|++|.+.+++|.+|.|+|+......+ ....................+.+.+
T Consensus 6 ~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 84 (123)
T d1wfta_ 6 SGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID 84 (123)
T ss_dssp SCCCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred CCCcCCcccEEEe-CCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence 4688888888754 6789999999999888899999999987654322 1111110100011111223334444
Q ss_pred eccCCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
|.+++.|.|||+|.|..|.|++|...
T Consensus 85 -L~p~t~Y~frV~A~N~~G~Gp~S~~~ 110 (123)
T d1wfta_ 85 -YTSRPAIVFRISAKNEKGYGPATQIR 110 (123)
T ss_dssp -CSSSCEEEEEEEEBSSSSBCCCEEEE
T ss_pred -CCCCCEEEEEEEEecCCcCCCCCCcE
Confidence 99999999999999999999887653
|
| >d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Sidekick 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.1e-11 Score=87.79 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=69.1
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC-eEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
.+.|.+|.++.+...+.+++.|+|++|...++.+.+|.|+|+..+... |...... .....+.+.+ |.++
T Consensus 8 e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~---------~~~~~~~i~~-L~p~ 77 (106)
T d1wfna1 8 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLP---------NVTLEYRVTG-LTAL 77 (106)
T ss_dssp CCSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCEEEC---------SSCCEEEEES-CCTT
T ss_pred CCCCcCCCCcEEEEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcceEEEecC---------CCeeEEEEcc-CCCC
Confidence 456888999999999999999999998887888999999998775432 2211111 1223445555 9999
Q ss_pred ceeEEEEEEEcCCCcCCCCCC
Q psy14886 355 STYEFKVIAGNELGYGEPSSP 375 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~ 375 (505)
+.|.|+|+|.|..|.|++|..
T Consensus 78 t~Y~~~V~A~n~~G~g~~s~~ 98 (106)
T d1wfna1 78 TTYTIEVAAMTSKGQGQVSAS 98 (106)
T ss_dssp CEEEEEEEEECSSCEEEEEEE
T ss_pred CEEEEEEEEECCCCCcCCcCC
Confidence 999999999999999987654
|
| >d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.1e-11 Score=84.99 Aligned_cols=88 Identities=11% Similarity=0.099 Sum_probs=61.1
Q ss_pred CCCCceeeeecc-ccccEEEEEEeCCccc--cCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEE
Q psy14886 387 YQAPSRIGGGGG-KIGDLSISWEPLPREK--QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEV 463 (505)
Q Consensus 387 ~~~P~~~~~~~~-~~~~v~l~W~~~~~~~--~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~ 463 (505)
|.||.|+++... .++.+.|+|++|+..+ .+...+.|.|+|+..+...|........ +.+ +|.|++.|.|
T Consensus 2 PdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~~-----t~~---~L~p~~~Y~v 73 (94)
T d3d85d3 2 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDK-----TSA---TVICRKNASI 73 (94)
T ss_dssp CCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESS-----SEE---EECCCSSCEE
T ss_pred CCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccccc-----eEE---EecCCCCEEE
Confidence 468999999754 4577999999965433 2334789999999988777776554431 223 4678999999
Q ss_pred EEEEecCCCCCCCCceEEE
Q psy14886 464 KVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 464 ~v~a~n~~G~g~~s~~~~~ 482 (505)
+|+|.+..|.|.+|+....
T Consensus 74 ~VRa~~~~~~g~WSeWS~~ 92 (94)
T d3d85d3 74 SVRAQDRYYSSSWSEWASV 92 (94)
T ss_dssp EEEEEESSSCCCCCCCEEE
T ss_pred EEEEecCCCCCCCccCcCC
Confidence 9999999999999998764
|
| >d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.8e-11 Score=90.14 Aligned_cols=100 Identities=22% Similarity=0.213 Sum_probs=73.6
Q ss_pred CCC-CCCCceEEEEEeCCeEEEEeecCC--CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 277 GPP-GLPGGVQVVEVHKTSATIQWTDGA--TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 277 ~~p-~~p~~~~~~~~~~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
+.| .+|.++.+...+.+++.|+|+++. ..++.+.+|.|+|+......+..... ..+....+.+.+|.+
T Consensus 9 ~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~---------~~~~~~~~~i~~L~p 79 (119)
T d1x5ha1 9 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETL---------VSGTQLSQLIEGLDR 79 (119)
T ss_dssp SSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCB---------CCTTCCEEEEECCCS
T ss_pred CCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeee---------cCCCccEEEeCCCCC
Confidence 345 478889998899999999999875 44568899999998876544433211 112333344444999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p 386 (505)
++.|.|+|+|.|..|.|++|.+. .++|.+..+
T Consensus 80 ~t~Y~~~V~A~n~~G~G~~S~~~-~~~T~~~~~ 111 (119)
T d1x5ha1 80 GTEYNFRVAALTINGTGPATDWL-SAETFESDL 111 (119)
T ss_dssp SCEEEEECEEEETTEEEEECCCE-EEECCSSCC
T ss_pred CCEEEEEEEEEcCCcCCCCCCCE-EEEeCCCCC
Confidence 99999999999999999888765 677766544
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.3e-11 Score=86.02 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=66.7
Q ss_pred ceEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEecC--CC-cEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGS--GG-RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~~--~~-~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+...+|+.+.|.|.+. +.|.++|.|+++|..+.. .. ......+++|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 89 (101)
T d1iray1 10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 89 (101)
T ss_dssp CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEE
Confidence 446788999999999885 568889999998865432 11 12233467899999999999999999999999999999
Q ss_pred EEEEEeC
Q psy14886 173 RLIVLHG 179 (505)
Q Consensus 173 ~l~v~~~ 179 (505)
.|.|...
T Consensus 90 ~L~V~~~ 96 (101)
T d1iray1 90 SAKFVEN 96 (101)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9998753
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.3e-10 Score=81.86 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=62.5
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeCC---CEEEcCCCCCCCEEEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG---NLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~ 162 (505)
+|.|.... .+...+.+|+++.|.|.+. .|.+.+.|+++|..+..+ .++.+...+ .|.|.++...|+|.|+|.|.
T Consensus 5 ~~~f~~~l-~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 82 (94)
T d1pd6a_ 5 STAFQKKL-EPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG 82 (94)
T ss_dssp TSSCSEEC-CSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred CCcEEEeC-CCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence 34444332 4556789999999999985 478899999999998754 334443332 59999999999999999996
Q ss_pred cCCCceeeeEEEEEE
Q psy14886 163 NVHGMDESKGRLIVL 177 (505)
Q Consensus 163 ~~~g~~~~~~~l~v~ 177 (505)
| ....+.|.|.
T Consensus 83 n----~~~s~~l~V~ 93 (94)
T d1pd6a_ 83 G----EKCSTELFVK 93 (94)
T ss_dssp T----EEECCEEEEE
T ss_pred e----EEEEEEEEEE
Confidence 5 3455666663
|
| >d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-4 receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.4e-10 Score=83.44 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=62.3
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCC---ceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPI---THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i---~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
+|.+|.++.+.....+++.|+|.+|...+... ..|.++|+......|........ ......+.+.+|.|+
T Consensus 1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~-------~~~~~~~~i~~L~p~ 73 (101)
T d1iarb2 1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTY-------LEPSLRIAASTLKSG 73 (101)
T ss_dssp CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECS-------SCCEEEECC-----C
T ss_pred CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeecc-------CccceEEEECCCCCC
Confidence 47899999999999999999999886544332 46999999887766654322111 122334444459999
Q ss_pred ceeEEEEEEEcCCCcCCCCCCCC
Q psy14886 355 STYEFKVIAGNELGYGEPSSPSP 377 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~~~ 377 (505)
+.|.|||+|.|..|.|.+|+++.
T Consensus 74 t~Y~~rVrA~~~~g~g~wSewS~ 96 (101)
T d1iarb2 74 ISYRARVRAWAQAYNTTWSEWSP 96 (101)
T ss_dssp CCEEEEEEEECGGGTCCCCCCCC
T ss_pred CEEEEEEEEEcCCCCCCCcCCCC
Confidence 99999999999999999998863
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.2e-10 Score=81.44 Aligned_cols=76 Identities=29% Similarity=0.402 Sum_probs=60.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
.+..+.+|+++.|.|.+. .|.+.+.|+++|..+..+. ++.+..++ .|.|.++..+|+|.|+|.|.| ....
T Consensus 8 ~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~ 82 (90)
T d1x44a1 8 EDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSS 82 (90)
T ss_dssp CCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEE
T ss_pred CCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceEE
Confidence 457799999999999995 5788999999999886543 34444433 599999999999999999965 3455
Q ss_pred EEEEEE
Q psy14886 172 GRLIVL 177 (505)
Q Consensus 172 ~~l~v~ 177 (505)
+.|.|.
T Consensus 83 a~l~V~ 88 (90)
T d1x44a1 83 AKLSVD 88 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 667664
|
| >d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=8.6e-11 Score=86.38 Aligned_cols=94 Identities=28% Similarity=0.400 Sum_probs=68.3
Q ss_pred CCCCCCceEEEEE--eCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC---eEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 278 PPGLPGGVQVVEV--HKTSATIQWTDGATNGRPITHYKIIARTNWNST---WFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 278 ~p~~p~~~~~~~~--~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
|+.+|.++.+... ...+|.|+|++|...++++.+|.++|+...... |..... ......+.+.+|.
T Consensus 11 P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~L~ 80 (111)
T d1x5ka1 11 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV----------VGNRLTHQIQELT 80 (111)
T ss_dssp CCSCCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEE----------STTCSEEEECSCC
T ss_pred CCCCCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEEe----------CCCeeEEEECCCC
Confidence 3456777776543 567899999999888889999999998765433 333221 1333334444599
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
+++.|.|+|+|.|..|.|++|... .++|.
T Consensus 81 p~t~Y~~~V~A~n~~G~g~~S~~v-~~~T~ 109 (111)
T d1x5ka1 81 LDTPYYFKIQARNSKGMGPMSEAV-QFRTP 109 (111)
T ss_dssp SSSEEEEEEEEECSSCBCCCCCCE-EEECC
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCE-EEECC
Confidence 999999999999999999988764 45553
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.9e-11 Score=85.99 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--CCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--NGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|++++|.|.+.|.|.+.+.|++ ++..... ........ .++|.|.++. .+|+|.|+|.|.|..|.
T Consensus 13 v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~ 85 (96)
T d2c9aa1 13 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP------LKEIKVTSSRRFIASFNVVNTT-KRDAGKYRCMIRTEGGV 85 (96)
T ss_dssp ECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC------EEEEEEEETTEEEEEEEECSCC-GGGCSEEEEEEEETTEE
T ss_pred EeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec------CCceeEEEeecCceEEEECCCC-HHHCeEEEEEEEeCCCe
Confidence 5789999999999998866554433 2222210 11122222 3579999999 99999999999999998
Q ss_pred eEee-EEEEE
Q psy14886 75 RYSS-AQLRV 83 (505)
Q Consensus 75 ~~~~-~~l~v 83 (505)
..++ +.|.|
T Consensus 86 ~~s~~a~L~V 95 (96)
T d2c9aa1 86 GISNYAELVV 95 (96)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 6654 67776
|
| >d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.3e-10 Score=85.02 Aligned_cols=99 Identities=26% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCC--CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGA--TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
|+.+|.++.+...+.+++.|+|.++. ..++++.+|.+.|+......+....... . ........+.+.+|.|++
T Consensus 8 P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~i~~L~p~t 82 (109)
T d1va9a1 8 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVE----M-KATGDSEVYTLDNLKKFA 82 (109)
T ss_dssp CSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCB----C-CCCSSEEEEEEESCCSSC
T ss_pred CCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeE----E-ecCCCeeEEEECCCCcce
Confidence 44688899999999999999999875 3457899999999887654332211100 0 011223334444599999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
.|.|+|+|.|..|.|++|.+. .++|+
T Consensus 83 ~Y~~~V~a~n~~G~g~~S~~v-~~~T~ 108 (109)
T d1va9a1 83 QYGVVVQAFNRAGTGPSSSEI-NATTL 108 (109)
T ss_dssp CEEEEEEEEETTEECCCCCCE-ECCCC
T ss_pred EEEEEEEEEcCCcCCCCCCCE-EEEcC
Confidence 999999999999999988764 45543
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.2e-11 Score=87.48 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=58.3
Q ss_pred CCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 386 p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
++.|| ++.+.. ..+++.|.|.+| ....+..++.|.|+|+..+...+....... ...+.+.|.+|.|++.|.|||
T Consensus 5 k~~Pp-~l~v~~-~~~s~~l~W~~P-~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~---~~~~~~~l~~L~p~t~Y~~rV 78 (100)
T d2gysa4 5 QMAPP-SLQVTK-DGDSYSLRWETM-KMRYEHIDHTFEIQYRKDTATWKDSKTETL---QNAHSMALPALEPSTRYWARV 78 (100)
T ss_dssp CCCCC-EEEEC----CCCEEEEEC---------CEEEEEEEECSSSCSTTSCEEEE---ESCSEEECCCCCSSCCCEEEE
T ss_pred cCCCC-ccEEEE-CCCEEEEEEecC-cccCCccceEEEEEEeecccceeceeeccc---CCceEEEeCCCCCCCeEEEEE
Confidence 34466 688764 457899999983 333444567999999987644222211111 124578999999999999999
Q ss_pred EEecCCCC--CCCCceEEE
Q psy14886 466 QAINDVGP--GPESEVVTI 482 (505)
Q Consensus 466 ~a~n~~G~--g~~s~~~~~ 482 (505)
+|.+..|. |.+|+....
T Consensus 79 Ra~~~~g~~~g~WSeWS~~ 97 (100)
T d2gysa4 79 RVRTSRTGYNGIWSEWSEA 97 (100)
T ss_dssp EEEECCTTCCBCCCCCCCC
T ss_pred EEEECCCCCCCCccCCCCC
Confidence 99998874 777776543
|
| >d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=5.4e-11 Score=88.63 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCC-CCCCceEEEEEEe----CCCCCeEEeeeccccceeeeecCceeeEEeeec
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATN-GRPITHYKIIART----NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL 351 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~-~~~i~~y~v~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L 351 (505)
.+|.+|..+.+..+..++|.|+|++|.+. +.++..|.++|+. .....|...... ....+.+.+ |
T Consensus 14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~----------~~~~~~v~~-L 82 (120)
T d1wfua_ 14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTG----------YATRHVVEG-L 82 (120)
T ss_dssp CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEE----------SCSEEEEES-C
T ss_pred cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccc----------cccEEeCCC-C
Confidence 35677777888889999999999988744 4567777777654 234556554321 123445555 9
Q ss_pred cCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCC
Q psy14886 352 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387 (505)
Q Consensus 352 ~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~ 387 (505)
.+++.|.|||+|.|..|.|.+|... .+.|....|+
T Consensus 83 ~p~t~Y~frV~A~n~~G~s~~S~~~-~~~T~~~~pP 117 (120)
T d1wfua_ 83 EPRTLYKFRLKVTSPSGEYEYSPVV-SVATTRESGP 117 (120)
T ss_dssp CTTCEEEEEEEEECSSSCEEECCCE-EEECCCCCCC
T ss_pred CCCcEeeEEEEEEeCCcEeCCCCCE-EEEeCCCCcC
Confidence 9999999999999999999988765 5666554443
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=1.1e-10 Score=84.05 Aligned_cols=81 Identities=20% Similarity=0.381 Sum_probs=62.2
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEec-----------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-----------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~-----------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+.+.+.+|+++.|.|.+.+.|.+.+.|++++.... .........+++|.|.++..+|+|.|+|.|.|.
T Consensus 8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~ 87 (102)
T d1f97a1 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE 87 (102)
T ss_dssp CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEEC
Confidence 356789999999999999999999999998433211 001112223567999999999999999999999
Q ss_pred CCceeeeEEEEE
Q psy14886 165 HGMDESKGRLIV 176 (505)
Q Consensus 165 ~g~~~~~~~l~v 176 (505)
.|.....+.+.|
T Consensus 88 ~g~~~~~~~v~v 99 (102)
T d1f97a1 88 GGQNYGEVSIHL 99 (102)
T ss_dssp TSSSEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 998877766655
|
| >d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Integrin beta-4 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.6e-11 Score=82.62 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
++|.++.+..++.++|.|+|++|. +.+.+|.|+|+......+....... ....+.+. +|.|++.|.|
T Consensus 3 ~aP~n~~~~~~s~~si~l~W~~p~---~~~~~Y~i~y~~~~~~~~~~~~~~~---------~~~~~~i~-~L~p~t~Y~~ 69 (92)
T d1qg3a1 3 GAPQNPNAKAAGSRKIHFNWLPPS---GKPMGYRVKYWIQGDSESEAHLLDS---------KVPSVELT-NLYPYCDYEM 69 (92)
T ss_dssp CCCEEEEEEECSTTCEEEEEECCS---SCCCEEEEEEEETTSCGGGCEEEEE---------SSSEEEEC-SCCTTCEEEE
T ss_pred CcCCCCEEEEccCCEEEEEEEecC---CCccceEEeeeeccccccEEEEecC---------CccEEEEC-CCCCCcEEEE
Confidence 578889999999999999999873 4578999999887654332221111 22344444 4999999999
Q ss_pred EEEEEcCCCcCCCCCCCCCccCC
Q psy14886 360 KVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
+|+|.|..|.|++|... .++|.
T Consensus 70 ~V~A~n~~G~g~~S~~~-~~~T~ 91 (92)
T d1qg3a1 70 KVCAYGAQGEGPYSSLV-SCRTH 91 (92)
T ss_dssp EEEEECSSCBCCCCCCE-EEECC
T ss_pred EEEEEeCCcCcCCCCCE-EEEcC
Confidence 99999999999988764 45553
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.14 E-value=1.7e-12 Score=90.64 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--E--CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--Q--DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~--~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|+++.|.|.+ +.|.+.+.|+|||.++.. ..++.+ . ..+|.|.+++ .+|+|.|+|.|.|. .
T Consensus 13 v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~-------~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~n~----~ 79 (89)
T d1tiua_ 13 VFVGETAHFEIEL-SEPDVHGQWKLKGQPLTA-------SPDCEIIEDGKKHILILHNCQ-LGMTGEVSFQAANA----K 79 (89)
T ss_dssp EETTSCCCEEEBC-SSSSCCCBCCSSSCCCCS-------SSSCEEEECSSCEEEECCSCC-SCCCSEECCBCSSC----B
T ss_pred EeCCCcEEEEEEE-CCCCcEEEEEEeeeeccc-------ceeEEEEeeceeEEEEEcCCC-hhcCEEEEEEECce----E
Confidence 4689999999998 568899999999999873 344444 2 2479999999 99999999998663 4
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
.++.|.|.+
T Consensus 80 ~sa~l~V~e 88 (89)
T d1tiua_ 80 SAANLKVKE 88 (89)
T ss_dssp CCEEEEEEC
T ss_pred EEEEEEEEE
Confidence 456777764
|
| >d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Contactin 3 (KIAA1496) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.9e-10 Score=85.10 Aligned_cols=87 Identities=24% Similarity=0.291 Sum_probs=65.6
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCC--CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCC
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGA--TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPW 354 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 354 (505)
.+|..|....+.......+.|+|+++. ..++.+.+|.|+|+..+...|..... ...+.+.+ |.++
T Consensus 16 ~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~------------~~~~~~~~-L~p~ 82 (117)
T d1wj3a_ 16 TPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT------------NKTSAELV-LPIK 82 (117)
T ss_dssp CCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEE------------SSSEEEEE-CCCS
T ss_pred CCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeec------------eeeEEEee-ccCC
Confidence 455544344456678899999999754 45678999999999887766655432 22445555 9999
Q ss_pred ceeEEEEEEEcCCCcCCCCCCC
Q psy14886 355 STYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
+.|.|+|+|.|..|.|++|...
T Consensus 83 t~Y~~~V~A~n~~G~G~~S~~v 104 (117)
T d1wj3a_ 83 EDYIIEVKATTDGGDGTSSEQI 104 (117)
T ss_dssp SCEEEEEEEEESSCCCCBCCCE
T ss_pred cEEEEEEEEEcCCccCCCCCCE
Confidence 9999999999999999988764
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.13 E-value=3.9e-11 Score=82.78 Aligned_cols=68 Identities=24% Similarity=0.445 Sum_probs=53.6
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.+.|. ..+.|++||..+.. .++.|.|.+++ .+|+|.|+|.+.|..+. ..+
T Consensus 16 v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-------------~~~~l~i~~v~-~~dsG~Y~C~a~ns~~S--~~v 79 (85)
T d2fcba1 16 VLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-------------HTQPSYRFKAN-NNDSGEYTCQTGQTSLS--DPV 79 (85)
T ss_dssp EETTCEEEEEEECSSCCCTTCCEEEETTEECTT-------------CCSSEEEEECC-GGGCEEEEEECTTSBCC--CCE
T ss_pred EcCCCeEEEEEEEeeccceeEEEeecccccccc-------------cccceEEeecc-ccCCcEEEEECCCCccc--ccE
Confidence 468999999999988764 57999999998863 14679999999 99999999999875433 245
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.|.|.
T Consensus 80 ~l~V~ 84 (85)
T d2fcba1 80 HLTVL 84 (85)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55553
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.9e-11 Score=83.99 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=60.5
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEecCCCcEE-Eee---CCCEEEcCCCCCCCEEEEEE
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSGGRRK-IFE---NGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~~~~~~~~-~~~---~~~l~i~~v~~~d~G~y~C~ 160 (505)
.|.|. .+ .+..+.+|+++.|.|.+.|.|.|.+.|++ ++.......+.. ... .++|.|.++..+|+|.|+|.
T Consensus 2 ~P~f~-~~--~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 78 (96)
T d2c9aa1 2 TPHFL-RI--QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM 78 (96)
T ss_dssp SCEEC-CC--CCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred cCeec-cc--CCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence 35564 23 45789999999999999999877544332 332222221222 211 23699999999999999999
Q ss_pred EEcCCCceeee-EEEEE
Q psy14886 161 ATNVHGMDESK-GRLIV 176 (505)
Q Consensus 161 ~~~~~g~~~~~-~~l~v 176 (505)
|.|..|...+. +.|.|
T Consensus 79 a~N~~G~~~s~~a~L~V 95 (96)
T d2c9aa1 79 IRTEGGVGISNYAELVV 95 (96)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEEEE
Confidence 99999987655 67776
|
| >d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA0343 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=8.7e-11 Score=88.48 Aligned_cols=107 Identities=25% Similarity=0.303 Sum_probs=73.8
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCC--CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGAT--NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~--~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
|+.+|.++++..+..+++.|+|+++.. .+..+..|.+.++......+........ ...........+.+.+|.|++
T Consensus 14 P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t 91 (125)
T d1uena_ 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK--KILTFQGSKTHGMLPGLEPFS 91 (125)
T ss_dssp CCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCE--EEEEEESSCSEEEEESCCSSC
T ss_pred CCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccc--eEEEeCCCccEEEECCCCCCC
Confidence 556889999999999999999998763 3567888888887654322211100000 001111233334444599999
Q ss_pred eeEEEEEEEcCCCcCCCCCCCCCccCCCCCCC
Q psy14886 356 TYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~ 387 (505)
.|.|+|+|.|..|.|++|.+. .+.|.++.|+
T Consensus 92 ~Y~~~V~A~n~~G~g~~S~~~-~~~T~~~~pp 122 (125)
T d1uena_ 92 HYTLNVRVVNGKGEGPASPDR-VFNTPEGSGP 122 (125)
T ss_dssp EEEEEEEEEESSCEEEECCCE-EEECCCCCSS
T ss_pred EEEEEEEEEeCCcccCCCCCE-EEECCCCCcC
Confidence 999999999999999988875 7788777664
|
| >d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor gp130 cytokine-binding domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=8.3e-11 Score=83.34 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=67.0
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.||++|.++++......++.|+|.++.+++.+ ++|.|.++......|....... .....++..+|.+++.
T Consensus 2 ~PP~~P~n~~~~~~~~~si~~~W~p~~~~~~~-~~y~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~L~~~~~ 71 (95)
T d1bqua1 2 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLE-TNFTLKSEWATHKFADCKAKRD---------TPTSCTVDYSTVYFVN 71 (95)
T ss_dssp CCCCCCEEEEEEEETTSCCEEEEECCSCCSSC-CEEEEEEEETTEECCCEECCSS---------CTTEEECSSCCCTTSC
T ss_pred cCcCCCeeeEEEEccCCEEEEEEeCcccCCCc-eEEEEEEEEcccceeEeecccc---------cceeeeeeeecCCCcE
Confidence 37899999999999999999999998776665 7899999988765554432221 2334455556999999
Q ss_pred eEEEEEEEcCCCcCC
Q psy14886 357 YEFKVIAGNELGYGE 371 (505)
Q Consensus 357 y~~~v~a~n~~G~~~ 371 (505)
|.|+|.|.|.+|.+.
T Consensus 72 Y~f~V~A~N~~G~s~ 86 (95)
T d1bqua1 72 IEVWVEAENALGKVT 86 (95)
T ss_dssp EEEEEEEEETTEEEE
T ss_pred EEEEEEEEeCCcccc
Confidence 999999999999885
|
| >d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=3.8e-10 Score=82.85 Aligned_cols=92 Identities=24% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
..|.+|.++++.. ..+++.|+|.+|...++++.+|.|+++..+...|...... ....+.+.+ |.+++.
T Consensus 19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~~~~~~~~~----------~~~~~~i~~-L~p~t~ 86 (113)
T d1x5ia1 19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDY----------KQRYYTIEN-LDPSSH 86 (113)
T ss_dssp SCCCSCSEEEEEE-ETTEEEEEEECCSCTTBCCCEEEEEECSSCGGGEEEECCT----------TCCEEEECS-CCSSCE
T ss_pred CCCCCCEeeeeee-CCCEEEEEEEccccCCccEEEEEEEeeeccccceeeeeeC----------CccEEEEec-cccCcE
Confidence 4688888888754 5789999999998888899999999987765544432111 223445554 999999
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
|.|+|+|.|..|.|.++.. .+.|.
T Consensus 87 Y~~~V~A~n~~G~g~~~~~--~~~T~ 110 (113)
T d1x5ia1 87 YVITLKAFNNVGEGIPLYE--SAVTR 110 (113)
T ss_dssp ECCEEEEECSSCBCCCCCC--CEECC
T ss_pred EEEEEEEECCCcCCCCeee--EEEeC
Confidence 9999999999999986543 34443
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=7.3e-11 Score=80.68 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=56.0
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
|.+.+.| ....+.+|++++|.|.+.+.|.+ .+.|++++..+... +..|.|.+++.+|+|.|+|.|.+..+
T Consensus 2 P~It~~P--~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~v~~~d~G~Y~C~a~~s~~ 72 (82)
T d1f2qa1 2 PKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFEDSGEYKCQHQQVNE 72 (82)
T ss_dssp CCCEEES--SCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------SSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred CEEEEcC--CCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-------cceeEECCCChhhCCcEEEEecCCCC
Confidence 4444444 33568899999999999999876 56678888877543 44699999999999999999987544
Q ss_pred ceeeeEEEEE
Q psy14886 167 MDESKGRLIV 176 (505)
Q Consensus 167 ~~~~~~~l~v 176 (505)
. ..+.|.|
T Consensus 73 S--~~v~l~V 80 (82)
T d1f2qa1 73 S--EPVYLEV 80 (82)
T ss_dssp C--CCEEEEE
T ss_pred c--ccEEEEE
Confidence 3 3355555
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.5e-11 Score=88.25 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=64.3
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCC-CCC--eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~--~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
|+.+.+.+.+ ..+.+|+.++|.|.+.|. |.+ ++.|++++..+.............|.|..+..+|+|.|+|.|.|
T Consensus 4 P~~v~i~p~~--~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n 81 (103)
T d1iama1 4 PERVELAPLP--SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL 81 (103)
T ss_dssp CSEEEECCCC--SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCceEEeCCC--ceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEe
Confidence 4555555433 357899999999999864 544 68899999987542111111223589999999999999999999
Q ss_pred CCCceeeeEEEEEE
Q psy14886 164 VHGMDESKGRLIVL 177 (505)
Q Consensus 164 ~~g~~~~~~~l~v~ 177 (505)
..|.......+.+.
T Consensus 82 ~~g~~~~~~~~~~s 95 (103)
T d1iama1 82 DLRPQGLELFENTS 95 (103)
T ss_dssp ECGGGTSCEEEEEC
T ss_pred CCCCccCeEeeeEc
Confidence 98887766666663
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=6.9e-11 Score=84.49 Aligned_cols=90 Identities=8% Similarity=-0.061 Sum_probs=63.7
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|.++++...+.. .+|.|++ +.+.++.+ |.++++..+...|.............+.+.+.+|.++..|.|||+|+
T Consensus 3 ~P~nv~v~s~n~~-~~L~W~p--P~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~ 77 (98)
T d1fyhb1 3 TPTNVTIESYNMN-PIVYWEY--QIMPQVPV--FTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR 77 (98)
T ss_dssp CCEEEEEECBSSC-CEEEEEC--CCCSSCCE--EEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred cCCceEEEEeCCc-EEEEECC--CCCCCCCc--eeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEE
Confidence 6899999876554 4699998 44555554 55555555534443322222223356788899999999999999999
Q ss_pred cCCCCCCCCceEEEe
Q psy14886 469 NDVGPGPESEVVTIW 483 (505)
Q Consensus 469 n~~G~g~~s~~~~~~ 483 (505)
|..|.|++++...+.
T Consensus 78 n~~g~S~ws~s~~f~ 92 (98)
T d1fyhb1 78 VGQKESAYAKSEEFA 92 (98)
T ss_dssp ETTEECCCEECCCBC
T ss_pred cCCcccCCccCCCcE
Confidence 999999999876553
|
| >d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Neogenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4.3e-10 Score=80.63 Aligned_cols=94 Identities=20% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCC----CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATN----GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~----~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
|+.||.++.+..++.+++.|+|++|... ...+..|.++++..+...+....... ....+.+.+ |.|
T Consensus 1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p 70 (100)
T d1x5ja1 1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANA---------TTLSYLVTG-LKP 70 (100)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCB---------CSSEEEEES-CCT
T ss_pred CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCC---------CccEEEECC-CCC
Confidence 4668889999999999999999987522 24557888988877654433221111 223455555 999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
++.|.|+|+|.|..|.|.+|... .+.|.
T Consensus 71 ~t~Y~~~V~a~n~~g~s~~S~~~-~~~T~ 98 (100)
T d1x5ja1 71 NTLYEFSVMVTKGRRSSTWSMTA-HGTTF 98 (100)
T ss_dssp TCEECCEEEEECSSCBCCCCCCC-CEECC
T ss_pred CCEEEEEEEEEeCCcCcCCCCeE-EEEec
Confidence 99999999999999999998875 55554
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=4.4e-11 Score=81.80 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=51.3
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.+|++++|.|.+.+.|.+ .+.|++++..+.. .+.+|.|.+++ .+|+|.|+|.|.+..+. ..+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~i~~v~-~~d~G~Y~C~a~~s~~S--~~v 76 (82)
T d1f2qa1 13 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------------TNSSLNIVNAK-FEDSGEYKCQHQQVNES--EPV 76 (82)
T ss_dssp EETTCCEEEECCTTCC----CCEEEETTEECSC-------------CSSEEEECSCC-GGGCEEEEEECTTSSCC--CCE
T ss_pred EeCCCeEEEEEEEeeeeeecceeeeeeeeeeec-------------ccceeEECCCC-hhhCCcEEEEecCCCCc--ccE
Confidence 4689999999999987764 5678899988763 24679999999 99999999999875433 245
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.|.|.
T Consensus 77 ~l~V~ 81 (82)
T d1f2qa1 77 YLEVF 81 (82)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.08 E-value=3.4e-11 Score=83.89 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=62.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
.++.+.+|+++.|.|.+ +.|.+.+.|++||..+..+.++.+...+ .|.|.++..+|+|.|+|.|.|. ..++.
T Consensus 9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~sa~ 83 (89)
T d1tiua_ 9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----KSAAN 83 (89)
T ss_dssp CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----BCCEE
T ss_pred cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----EEEEE
Confidence 55789999999999998 4688899999999999888877776655 4999999999999999998653 34456
Q ss_pred EEEE
Q psy14886 174 LIVL 177 (505)
Q Consensus 174 l~v~ 177 (505)
|.|.
T Consensus 84 l~V~ 87 (89)
T d1tiua_ 84 LKVK 87 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6663
|
| >d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Cytokine receptor common gamma chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.5e-09 Score=76.52 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=67.4
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
.|.+|.++.+..+..+++.|+|++|.. ..+..|.|+|+..+...|...... ....+.+.+ |.|++.|
T Consensus 2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~--~~~~~y~v~y~~~~~~~~~~~~~~----------~~~~~~~~~-L~p~t~Y 68 (95)
T d2b5ic1 2 IPWAPENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWDHSWTEQSVD----------YRHKFSLPS-VDGQKRY 68 (95)
T ss_dssp ECCCCEEEEEEEEETTEEEEEEECSSC--STTCEEEEEEEETTCSSCEEEEEC----------SSCEEEECS-CCTTSCE
T ss_pred CCcCCCCCEEEEEeCCEEEEEECCCCC--ceeEEEEEEEEcCCCceeeEeeec----------ccceeEcCC-CCCCCEE
Confidence 488999999999999999999998753 446789999999988888875432 223444555 9999999
Q ss_pred EEEEEEEcCCC---cCCCCCCC
Q psy14886 358 EFKVIAGNELG---YGEPSSPS 376 (505)
Q Consensus 358 ~~~v~a~n~~G---~~~~s~~~ 376 (505)
.|||+|.+..+ .|.+|+++
T Consensus 69 ~frVRa~~~~~~~~~g~WSeWS 90 (95)
T d2b5ic1 69 TFRVRSRFNPLCGSAQHWSEWS 90 (95)
T ss_dssp EEEEEEECCSSSCCCCCCCCCC
T ss_pred EEEEEEeeCCCCCCCCCccCCC
Confidence 99999987754 45567665
|
| >d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=8.5e-10 Score=79.47 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=64.5
Q ss_pred CCCCCCceEEE----EEeCCeEEEEeecCCC----CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEee
Q psy14886 278 PPGLPGGVQVV----EVHKTSATIQWTDGAT----NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 278 ~p~~p~~~~~~----~~~~~~v~l~w~~~~~----~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
.|.||.++.+. ......+.|+|++|.. .+..++.|.++|+..+...|...... ....+.+.+
T Consensus 2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~----------~~~~~~i~~ 71 (103)
T d1f6fb2 2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG----------HQTQFKVFD 71 (103)
T ss_dssp CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEE----------TCSEEEECC
T ss_pred CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeeccc----------ceeEEEeCC
Confidence 57888887764 3456779999999853 34567899999999988888765332 223455555
Q ss_pred eccCCceeEEEEEEEcCCCc-CCCCCC
Q psy14886 350 VLVPWSTYEFKVIAGNELGY-GEPSSP 375 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~-~~~s~~ 375 (505)
|.+++.|.|||+|.|..|. |.+|..
T Consensus 72 -L~p~t~Y~~rVra~~~~G~wS~wS~~ 97 (103)
T d1f6fb2 72 -LYPGQKYLVQTRCKPDHGYWSRWSQE 97 (103)
T ss_dssp -CCTTCEEEEEEEEEESSSCCCCCCCC
T ss_pred -CCcceEEEEEEEEEeCCCCCCCCcCc
Confidence 9999999999999999986 555544
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.07 E-value=1e-10 Score=80.30 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=51.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
....+.+|++++|.|.+.+.|.+ .+.|+++|..+... ..+|.|.++..+|+|.|+|.|.+...
T Consensus 13 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~G~Y~C~a~~s~~ 76 (84)
T d1fnla1 13 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------ASSYFIDAATVNDSGEYRCQTNLSTL 76 (84)
T ss_dssp CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------CSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred CCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec-------ceeeEecCCcccCCEEEEEEccCCCc
Confidence 44568999999999999998877 46677888776543 45699999999999999999976543
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.7e-10 Score=80.98 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=65.6
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|.++++... ...++|.|+|+ +.++ ....|.|+|+..+...|...............+.+.+|.++..|.|||+|+
T Consensus 6 ~P~nv~~~s~-n~~~~L~W~pp-~~~g--~~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~ 81 (99)
T d1y6kr1 6 SPPSVWFEAE-FFHHILHWTPI-PQQS--ESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAV 81 (99)
T ss_dssp CCSCEEEEEE-TTEEEEEECCC-TTCC--TTCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEE
T ss_pred CCCcceEEEE-CCEEEEEEcCC-CCcC--CCCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEE
Confidence 4778998644 45688999973 3333 246899999999888999775544332233445688999999999999999
Q ss_pred cCCCCCCCCce
Q psy14886 469 NDVGPGPESEV 479 (505)
Q Consensus 469 n~~G~g~~s~~ 479 (505)
|..|.|++++.
T Consensus 82 n~~g~S~Ws~t 92 (99)
T d1y6kr1 82 DGSRHSQWTVT 92 (99)
T ss_dssp ETTEECCCEEC
T ss_pred cCCCcCCCccc
Confidence 99999998764
|
| >d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=7e-10 Score=78.56 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
.| +|.++++..+..+++.|+|+++. +..+.+|.++++..+...|........ ....+.+.+ |.|++.|
T Consensus 6 vp-~P~~l~v~~~t~~si~l~W~~p~--~~~i~~Y~v~~~~~~~~~~~~~~~~~~--------~~t~~~i~~-L~p~t~Y 73 (95)
T d2fnba_ 6 VP-QLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIFEDFVDS--------SVGYYTVTG-LEPGIDY 73 (95)
T ss_dssp SC-CCTTCEEECCCSSCEEEECCCCC--CSSCCEEEEEEEEETSCCEEEEEECCS--------SCSEEEECC-CCTTSEE
T ss_pred cC-cCCCeEEEEEcCCEEEEEEEecC--CceEEeEEEEEEEeeccceEEEEEeCC--------CCeEEEEec-ccCCEEE
Confidence 45 68899999999999999999874 456899999999887766655422111 223444554 9999999
Q ss_pred EEEEEEEcCCCcCCCCC
Q psy14886 358 EFKVIAGNELGYGEPSS 374 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~ 374 (505)
.|+|.|.|..|.|.++.
T Consensus 74 ~~~V~a~~~~g~s~p~~ 90 (95)
T d2fnba_ 74 DISVITLINGGESAPTT 90 (95)
T ss_dssp EEEEEEEETTEECCCCE
T ss_pred EEEEEEEeCCcEeCCEE
Confidence 99999999999887653
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.05 E-value=1e-10 Score=80.36 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=47.9
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
|.+|++++|.|.+.+.|.+ .+.|++++..+.. .+.+|.|.+++ .+|+|.|+|.+.+..
T Consensus 17 v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~i~~~~-~~d~G~Y~C~a~~s~ 75 (84)
T d1fnla1 17 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------------QASSYFIDAAT-VNDSGEYRCQTNLST 75 (84)
T ss_dssp EETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------------SCSEEEESSCC-GGGCEEEEEECSSSC
T ss_pred EeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-------------cceeeEecCCc-ccCCEEEEEEccCCC
Confidence 4689999999999987765 5778889887763 24689999999 999999999987644
|
| >d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Brother of CDO precursor (BOC) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=3.2e-10 Score=81.43 Aligned_cols=95 Identities=24% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCC--CCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCc-eeeEEeeeccCC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGA--TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGR-KEASIENVLVPW 354 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~--~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~ 354 (505)
|+.+|.++.+..++.+++.|+|+++. ..++++.+|.|.|+......+...... ..... ..+.+. +|.++
T Consensus 1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~-------~~~~~~~~~~i~-~L~p~ 72 (101)
T d1x4ya1 1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD-------MVEGDRYWHSIS-HLQPE 72 (101)
T ss_dssp CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCE-------EEETTCCEEEEC-SCCTT
T ss_pred CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEE-------EEcCCeeEEEEc-CCCCC
Confidence 46788899999999999999999653 556789999999998765433221110 01122 344444 59999
Q ss_pred ceeEEEEEEEcCCCcCCCCCCCCCccC
Q psy14886 355 STYEFKVIAGNELGYGEPSSPSPQYNT 381 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~~~s~~~~~~~t 381 (505)
+.|.|+|+|.|..|.|++|... .+.|
T Consensus 73 t~Y~~~v~a~n~~G~s~~S~~~-~~~T 98 (101)
T d1x4ya1 73 TSYDIKMQCFNEGGESEFSNVM-ICET 98 (101)
T ss_dssp CEEEEEEEEECTTCCCCCCCCE-EEEC
T ss_pred CEEEEEEEEEcCCCCCCCCCcE-EEEc
Confidence 9999999999999999988764 4444
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.04 E-value=6.9e-11 Score=85.91 Aligned_cols=78 Identities=28% Similarity=0.317 Sum_probs=61.0
Q ss_pred EEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecC-------CCcEEEeeCCCEEEcCCCCCCCE---EEEEEEEcCCCc
Q psy14886 99 TYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-------GGRRKIFENGNLLISPVSRDDSG---IYSCTATNVHGM 167 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~-------~~~~~~~~~~~l~i~~v~~~d~G---~y~C~~~~~~g~ 167 (505)
..+.+|+++.|.|.+ .|.|.|.+.|++++..+.. ..+.....+++|.|.+++..|+| .|.|.|.|..|.
T Consensus 12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~ 91 (111)
T d1biha2 12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD 91 (111)
T ss_dssp ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence 456799999999996 7999999999997665432 23455566788999999988766 799999999998
Q ss_pred eeeeEEEEE
Q psy14886 168 DESKGRLIV 176 (505)
Q Consensus 168 ~~~~~~l~v 176 (505)
......+.+
T Consensus 92 ~~~~~~~~~ 100 (111)
T d1biha2 92 EEVVLVEYE 100 (111)
T ss_dssp SCEEEEEEE
T ss_pred ceEEEEEEE
Confidence 766654433
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.9e-10 Score=82.36 Aligned_cols=92 Identities=9% Similarity=0.046 Sum_probs=67.4
Q ss_pred CeeeeeCCCceEEEeeccEEEEEEeee-cCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEE
Q psy14886 180 PSYYEQLPPKITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258 (505)
Q Consensus 180 p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 258 (505)
|+.+...+....+..|+.++|.|.+.+ .|.+.++|.|++++..+...... .....+.|.|.....+|+|.|+|
T Consensus 4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~------~~~~~s~l~i~~~~~dd~g~ytC 77 (103)
T d1iama1 4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV------GEPAEVTTTVLVRRDHHGAQFSC 77 (103)
T ss_dssp CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC------TTTEEEEEEEECCSSCSSCEEEE
T ss_pred CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc------cccceEEEEEeeehhHCCCEEEE
Confidence 344444455566889999999999997 45567889999999888643211 11123578889899999999999
Q ss_pred EEEecCCcEEEEEEEEEcC
Q psy14886 259 VVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 259 ~~~n~~g~~~~~~~l~v~~ 277 (505)
.|.|..|.......+.+..
T Consensus 78 ~A~n~~g~~~~~~~~~~s~ 96 (103)
T d1iama1 78 RTELDLRPQGLELFENTSA 96 (103)
T ss_dssp EEEEECGGGTSCEEEEECC
T ss_pred EEEeCCCCccCeEeeeEcC
Confidence 9999999876666666653
|
| >d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Prolactin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.7e-09 Score=78.17 Aligned_cols=88 Identities=23% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCCCCCceEEE----EEeCCeEEEEeecCCCC----CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEee
Q psy14886 278 PPGLPGGVQVV----EVHKTSATIQWTDGATN----GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 278 ~p~~p~~~~~~----~~~~~~v~l~w~~~~~~----~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
.|.+|.++.+. ......+.|+|++|... +..+..|.++++..+...|...... ....+.+.+
T Consensus 2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~----------~~~~~~i~~ 71 (104)
T d3d48r2 2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAG----------QQTEFKILS 71 (104)
T ss_dssp CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEE----------TCSEEEECC
T ss_pred CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccc----------cccEEEECC
Confidence 58888888764 34567899999998632 3456789999988887777654322 223445555
Q ss_pred eccCCceeEEEEEEEcCCCc-CCCCCCC
Q psy14886 350 VLVPWSTYEFKVIAGNELGY-GEPSSPS 376 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~-~~~s~~~ 376 (505)
|.+++.|.|||+|.|..|. |++|...
T Consensus 72 -L~p~t~Y~~rVrA~n~~G~ws~wS~~~ 98 (104)
T d3d48r2 72 -LHPGQKYLVQVRCKPDHGYWSAWSPAT 98 (104)
T ss_dssp ---CCCEEEEEEEEEESSSCCCCCCCCE
T ss_pred -CCCCCEEEEEEEEEeCCCCCCCCcCCE
Confidence 9999999999999999997 7777654
|
| >d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=6.8e-10 Score=79.78 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=71.4
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeE
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~ 358 (505)
|.+|.++++..++.+++.|+|+++. +.+.+|.|+|+..+...|...... ....+.+. +|.|++.|.
T Consensus 1 P~~P~~l~~~~~t~~si~l~W~~p~---~~i~~Y~v~~~~~~~~~~~~~~~~----------~~~~~~l~-~L~p~t~Y~ 66 (102)
T d2cuha1 1 PDGPTQLRALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAETPG----------SAVDYPLH-DLVLHTNYT 66 (102)
T ss_dssp CSSCEEEECCCCSSSCEEEEEECCS---SCCSEEEEEEECSSSCCEEEEEET----------TCSEEEEC-SCCSSSEEE
T ss_pred CcCCCccEEEEeCCCEEEEEEEeee---ccceeeEEEEEeccccceeeeeee----------eeeeEEEc-cEEeeEEEE
Confidence 6788899999999999999999764 458899999988766555443211 22344454 499999999
Q ss_pred EEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeee
Q psy14886 359 FKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396 (505)
Q Consensus 359 ~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~ 396 (505)
|+|.|.|..|.+.++.. .+.|.. .+|.++.+.
T Consensus 67 ~~V~a~~~~~~s~~~~~--~~~T~~----~~P~~l~~~ 98 (102)
T d2cuha1 67 ATVRGLRGPNLTSPASI--TFTTGL----EAPRDLEAK 98 (102)
T ss_dssp EEEEEEETTEECCCEEE--EEESCC----CCTTTSSSC
T ss_pred EEEEEEeCCCCcCCEEE--EEECCC----CCCCCCEee
Confidence 99999999998876543 445533 356666654
|
| >d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Growth hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.5e-09 Score=77.09 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=60.4
Q ss_pred CCCCCceEEEEEe------CCeEEEEeecCCCC----CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEe
Q psy14886 279 PGLPGGVQVVEVH------KTSATIQWTDGATN----GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE 348 (505)
Q Consensus 279 p~~p~~~~~~~~~------~~~v~l~w~~~~~~----~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 348 (505)
|.||.++.+.... ..+|.|+|++|... +..+..|+++|+..+...|...... ....+.+.
T Consensus 1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~----------~~~~~~i~ 70 (106)
T d1axib2 1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPI----------LTTSVPVY 70 (106)
T ss_dssp CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCB----------SSSEEEEE
T ss_pred CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeec----------ccceEEEC
Confidence 6788877764432 24799999998632 2356789999999988999876432 22345555
Q ss_pred eeccCCceeEEEEEEEcCCCcCCCCCC
Q psy14886 349 NVLVPWSTYEFKVIAGNELGYGEPSSP 375 (505)
Q Consensus 349 ~~L~~~~~y~~~v~a~n~~G~~~~s~~ 375 (505)
+ |.+++.|.|||+|.|..| +.+|.+
T Consensus 71 ~-L~~~t~Y~frVRa~~~~~-g~ws~w 95 (106)
T d1axib2 71 S-LKVDKEYEVRVRSKQRNS-GNYGEF 95 (106)
T ss_dssp E-EETTSCEEEEEEEEETTS-SCCCCC
T ss_pred C-CCCCCEEEEEEEEEECCC-CCCCCC
Confidence 5 999999999999998654 333444
|
| >d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type III domain from chitinase A1. species: Bacillus circulans [TaxId: 1397]
Probab=98.98 E-value=2.4e-09 Score=74.15 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=60.2
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.+|.+|.++.+..++.+++.|+|+++.+. ..+.+|.+.+... .+... ....+.+.+ |.+++.
T Consensus 2 ~AP~~P~~l~~~~~~~~sv~lsW~~p~~~-~~i~~Y~i~~~~~---~~~~~-------------~~t~~~~~~-L~p~t~ 63 (88)
T d1k85a_ 2 MAPTAPTNLASTAQTTSSITLSWTASTDN-VGVTGYDVYNGTA---LATTV-------------TGTTATISG-LAADTS 63 (88)
T ss_dssp CSCCCCEEEEEEEECSSCEEEEEECCSCC-SSEEEEEEEESSS---EEEEE-------------SSSEEEECC-CCSSCE
T ss_pred cCcCCCCCcEEEEecCCEEEEEEeCCCCC-CCEEEEEEEccce---EEEec-------------CCCEEEECC-CCCCCE
Confidence 36889999999999999999999988653 4578898875321 11111 223445555 999999
Q ss_pred eEEEEEEEcCCC-cCCCCCC
Q psy14886 357 YEFKVIAGNELG-YGEPSSP 375 (505)
Q Consensus 357 y~~~v~a~n~~G-~~~~s~~ 375 (505)
|.|+|+|.|..| .|.+|..
T Consensus 64 Y~~~V~A~n~~G~~s~~S~~ 83 (88)
T d1k85a_ 64 YTFTVKAKDAAGNVSAASNA 83 (88)
T ss_dssp EEEEEEEEETTTEECCCCCC
T ss_pred EEEEEEEEECCCCcCCCCcC
Confidence 999999999999 5776654
|
| >d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.5e-11 Score=88.49 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=70.4
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
.+|..|..+++..+..+++.|+|.+|...++.|.+|.|+|+......+...... ........+...+|.+.+
T Consensus 3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~t- 74 (102)
T d2dtge1 3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTR-------KHFALERGCRLRGLSPGN- 74 (102)
T ss_dssp CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCS-------SSCCCTTCCCCCSCCSSE-
T ss_pred CCCCCCCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeee-------ecccceEEEEEeccceee-
Confidence 367778888888889999999999998888899999999987765443321111 011223334444499975
Q ss_pred eEEEEEEEcCCCcCCCCCCCCCccCC
Q psy14886 357 YEFKVIAGNELGYGEPSSPSPQYNTP 382 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s~~~~~~~t~ 382 (505)
|.|||+|.|..|.|++|.+. .+.+.
T Consensus 75 Y~~rV~A~n~~G~g~~S~~v-~f~~~ 99 (102)
T d2dtge1 75 YSVRIRATSLAGNGSWTEPT-YFYVT 99 (102)
T ss_dssp ECCCCCEEETTBCCCCCCCC-EECCC
T ss_pred EEEEEEEEcCCccCCCCCCE-EEEcc
Confidence 99999999999999988875 55543
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.4e-10 Score=82.36 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCCCCceEEEEEEec-cC--CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFG-VP--DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p--~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+.++|.|.+.| .| .+.++|+|+++++............ ....+.|.|...+ .+|.|.|+|.|.|..+....
T Consensus 14 v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~-~~~~s~l~~~~~~-~d~g~~ytC~A~n~~~~~~~ 91 (106)
T d1zxqa1 14 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADR-EDGHRNFSCLAVLDLMSRGG 91 (106)
T ss_dssp ECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCT-TCEEEEEEEECCG-GGGGCEEEEEEEEECGGGTC
T ss_pred EeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecc-cceeEEEEEeeeh-hcCCcEEEEEEEecCCCCCC
Confidence 468999999999986 44 5689999999988643211111110 0123467788877 88888999999998765544
Q ss_pred eEEEEEE
Q psy14886 78 SAQLRVL 84 (505)
Q Consensus 78 ~~~l~v~ 84 (505)
...+.+.
T Consensus 92 ~~~~~~s 98 (106)
T d1zxqa1 92 NIFHKHS 98 (106)
T ss_dssp CEEEEEC
T ss_pred eeEeccc
Confidence 4444443
|
| >d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.2e-09 Score=74.81 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
++|.++++..++.+++.|+|++|. +++.+|.|.|+......|..... .......+.+.+|.|++.|.|
T Consensus 2 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~Y~i~~~~~~~~~~~~~~~---------v~~~~~~~~i~~L~p~t~Y~~ 69 (89)
T d1fnfa3 2 DSPTGIDFSDITANSFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDR---------VPHSRNSITLTNLTPGTEYVV 69 (89)
T ss_dssp CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECSCCSSCCEEEE---------EETTCCEEEEESCCTTCEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEEeCC---CEEeeEEEEEEECCCCCceEEEE---------ECCCccEEEECCCcccCEEEE
Confidence 467889999999999999999874 45789999999876655543211 112333344445999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|++.
T Consensus 70 ~V~a~~~~g~s~p~ 83 (89)
T d1fnfa3 70 SIVALNGREESPLL 83 (89)
T ss_dssp EEEEEETTEECCCE
T ss_pred EEEEEcCCcCcCCE
Confidence 99999999987643
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=4e-11 Score=88.72 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=62.2
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEECcCCCCCCCCCCcEEEE--------CCeEEEEcCCCCCC-CeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQ--------DNVLTIRYLNPERD-PAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~~d-~G~Y~C~~~~ 70 (505)
+.+|+++.|.|.+.+. |.+.+.|++++..+... ...++... .+.|.|.+++ .+| +|.|+|.|.|
T Consensus 18 ~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~-----~~~~~~~~~~~~~~~~~s~L~I~~v~-~~D~~G~Y~C~A~N 91 (115)
T d2crya1 18 ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG-----TSGRYTVETISTEEGVISTLTISNIV-RADFQTIYNCTAWN 91 (115)
T ss_dssp CCTTSCCCCCEEECCSSCCSEEEEESSSCEECSE-----EETTEEEEEEEETTEEEEEEECTTCC-HHHHHSCEEEEEEC
T ss_pred EecCCEEEEEEEeecCCCeeEEEEeeeeeeEeee-----eeeeEeeeeeccccCcEEEEEEeccc-hhcCCeEEEEEEEE
Confidence 4689999999999884 56789999999888643 12233321 1369999999 998 6999999999
Q ss_pred ccCceEeeEEEEEEe
Q psy14886 71 QLKTRYSSAQLRVLT 85 (505)
Q Consensus 71 ~~~~~~~~~~l~v~~ 85 (505)
..|.....+.|.|..
T Consensus 92 ~~G~~~~~~~L~V~~ 106 (115)
T d2crya1 92 SFGSDTEIIRLKEQG 106 (115)
T ss_dssp SSCEEEEEECCCCSC
T ss_pred CCCeEEEEEEEEEEC
Confidence 999988888887763
|
| >d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.1e-09 Score=74.88 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
++|.++++..++.+++.|+|++|. +.+.+|.|+|+..+...|...... ......+.+.+|.|++.|.|
T Consensus 2 daP~nl~v~~~~~~s~~l~W~~p~---~~i~~Y~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~L~p~t~Y~~ 69 (89)
T d1fnha3 2 DAPSNLRFLATTPNSLLVSWQPPR---ARITGYIIKYEKPGSPPREVVPRP---------RPGVTEATITGLEPGTEYTI 69 (89)
T ss_dssp CCCEEEEEEEEETTEEEEEEECCS---SCCSEEEEEEECTTSCCEECTTCC---------CTTCCEEEEESCCTTCEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEeCCC---cCCceEEEEEeeccCCccEEEEEc---------CCCccEEEEEeeeCCCEEEE
Confidence 367889999999999999999874 458899999998766655442211 12233344445999999999
Q ss_pred EEEEEcCCCcCCC
Q psy14886 360 KVIAGNELGYGEP 372 (505)
Q Consensus 360 ~v~a~n~~G~~~~ 372 (505)
+|.|.|..|.|.+
T Consensus 70 ~V~a~n~~g~S~p 82 (89)
T d1fnha3 70 YVIALKNNQKSEP 82 (89)
T ss_dssp EEEEESSSCEEEE
T ss_pred EEEEEcCCCEeCC
Confidence 9999999998754
|
| >d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=5.6e-09 Score=73.28 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=62.6
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.+|.++.+.....+++.|+|++|. +++.+|.|+|+......+....... .......+.+.+|.|++.|.|
T Consensus 2 daP~~l~v~~~~~~sv~v~W~~p~---~~~~~y~v~y~~~~~~~~~~~~~~~-------~~~~~~~~~i~~L~p~t~Y~~ 71 (92)
T d1tdqa2 2 DAPKNLRVGSRTATSLDLEWDNSE---AEAQEYKVVYSTLAGEQYHEVLVPK-------GIGPTTKTTLTDLVPGTEYGV 71 (92)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEETTCCCCEEEEEEC-------CSSSEEEEEECSCCTTCEEEE
T ss_pred ccCcCCEEEEecCCEEEEEEEecC---CcccceEEEEEEcCCCcceeeEEEe-------cCCCeeEEEECCccCCCEEEE
Confidence 357889999999999999999873 4588999999987665544332111 113334444455999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|.++
T Consensus 72 ~V~a~~~~g~s~p~ 85 (92)
T d1tdqa2 72 GISAVMNSKQSIPA 85 (92)
T ss_dssp EEEEEETTEECCCE
T ss_pred EEEEEeCCCEecCE
Confidence 99999999998755
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=4e-09 Score=74.42 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=60.7
Q ss_pred eEEeeCCCeEEEEeecCC-CC-CCeEEEEECCEEec----------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 98 ETYAGEGGNVTIFCNPEA-AP-KPKFVWKKDGNIIG----------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~-~p-~~~i~W~~~g~~~~----------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
.+....|++|+|.|.... .. ...|.|++++..+. .+.+.....+++|.|.+++.+|+|.|+|.+.+..
T Consensus 4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~ 83 (98)
T d1hnga1 4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 83 (98)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence 355678999999996432 22 24899999887763 1345556667899999999999999999999988
Q ss_pred Cce--eeeEEEEEE
Q psy14886 166 GMD--ESKGRLIVL 177 (505)
Q Consensus 166 g~~--~~~~~l~v~ 177 (505)
|.. ...+.|.|.
T Consensus 84 g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 84 GTRILNKALDLRIL 97 (98)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEE
Confidence 876 445667664
|
| >d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.93 E-value=4.2e-09 Score=73.02 Aligned_cols=81 Identities=22% Similarity=0.357 Sum_probs=64.4
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
++|.++++..+..+++.|+|+++. +++.+|.|+|+......|....... ....+.+.+ |.|++.|.|
T Consensus 2 ~~P~~l~v~~v~~~s~~l~W~~~~---~~~~~Y~i~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y~~ 68 (88)
T d1qr4a2 2 GSPKGISFSDITENSATVSWTPPR---SRVDSYRVSYVPITGGTPNVVTVDG---------SKTRTKLVK-LVPGVDYNV 68 (88)
T ss_dssp CCCSCEEEESCCSSCEEEEECCCS---SCCSEEEEEEEETTCCCCEEEEEET---------TCCEEEECS-CCSSCEEEE
T ss_pred cCCcceEEEEecCCEEEEEEEccc---EeeceEEEEEEeccCCceEEEEecC---------CccEEEECC-CCCCCEEEE
Confidence 467889999999999999999763 4688999999998877776654322 233445554 999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|.+.
T Consensus 69 ~V~a~~~~g~s~p~ 82 (88)
T d1qr4a2 69 NIISVKGFEESEPI 82 (88)
T ss_dssp EEEEEETTEECCCE
T ss_pred EEEEEeCCCCcCCE
Confidence 99999999988653
|
| >d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3e-09 Score=81.05 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCC---------CCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEe
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNG---------RPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIE 348 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~---------~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~ 348 (505)
|..+..+.+..+..+++.|+|.+|...+ ..+..|.+.++..+. ..|..+... ....+.+.
T Consensus 18 ~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~----------~~~~~~i~ 87 (137)
T d1wk0a_ 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVG----------EETNITLN 87 (137)
T ss_dssp TTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEE----------SCSEEEEC
T ss_pred CCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEec----------CccEEEEC
Confidence 4555667788889999999999876432 245678888776543 334433211 12344555
Q ss_pred eeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCC
Q psy14886 349 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386 (505)
Q Consensus 349 ~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p 386 (505)
+ |.|++.|.|+|+|.|..|.|.+|... .+.|....|
T Consensus 88 ~-L~P~t~Y~f~V~A~n~~G~g~~S~~~-~~~T~~~~P 123 (137)
T d1wk0a_ 88 D-LKPAMDYHAKVQAEYNSIKGTPSEAE-IFTTLSCEP 123 (137)
T ss_dssp S-CCTTCEECEEEEEEETTEECCCCCCC-CEECCCSSS
T ss_pred C-CCCCcEEEEEEEEEcCCcccCCCCCE-EEECCCCCC
Confidence 5 99999999999999999999998875 677766655
|
| >d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.2e-09 Score=74.62 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=60.2
Q ss_pred CCCCCCceEEEEEeCC-eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 278 PPGLPGGVQVVEVHKT-SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~-~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
|+.||.++++...... .+.|+|+++. +..+.+|.|.|+......+......+ ......+.+.+|.|++.
T Consensus 1 P~~PP~~l~v~~~~~ts~i~v~W~~p~--~~~i~~Y~v~y~~~~~~~~~~~~~~~--------~~~~~~~~i~~L~p~t~ 70 (94)
T d1fnfa1 1 PLSPPTNLHLEANPDTGVLTVSWERST--TPDITGYRITTTPTNGQQGNSLEEVV--------HADQSSCTFDNLSPGLE 70 (94)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCS--CSSCCEEEEEEEETTTCSSCCEEEEE--------CTTCCEEECCCCCTTSC
T ss_pred CCCcCcCcEEEEecCCCEEEEEeeCCC--CCCeeEEEEEEEEecccCceEEEEEe--------CCCccEEEECCCCCCCE
Confidence 4568889998877654 5999999874 33488999999987654433221111 12333344445999999
Q ss_pred eEEEEEEEcCCCcCCC
Q psy14886 357 YEFKVIAGNELGYGEP 372 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~ 372 (505)
|.|+|.|.|..|.|.+
T Consensus 71 Y~v~V~a~~~~g~s~p 86 (94)
T d1fnfa1 71 YNVSVYTVKDDKESVP 86 (94)
T ss_dssp EEEEEEEEETTEECCC
T ss_pred EEEEEEEEcCCCEeCC
Confidence 9999999999998754
|
| >d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=7.6e-09 Score=72.07 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=63.3
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.||.++++..+..+++.|+|.++. +++.+|.|+|+......|...... .....+.+.+|.|++.|.|
T Consensus 3 spP~~l~v~~~~~~si~v~W~~p~---~~~~~Y~i~~~~~~~~~~~~~~~~----------~~~~~~~i~~L~p~t~Y~~ 69 (90)
T d1fnha2 3 SPPRRARVTDATETTITISWRTKT---ETITGFQVDAVPANGQTPIQRTIK----------PDVRSYTITGLQPGTDYKI 69 (90)
T ss_dssp CCCEEEEEEEECSSEEEEEEECCS---SCCCCEEEEEEESSSSCCEEEECC----------TTCSEEEEESCCTTCEEEE
T ss_pred CcCCCCEEEEecCCEEEEEEECCC---CCCceeEEEEEEccCCceEEEecC----------CCccEEEeCCCCCCcEEEE
Confidence 478899999999999999999763 468899999998876666654322 2234445555999999999
Q ss_pred EEEEEcCCCcCCC
Q psy14886 360 KVIAGNELGYGEP 372 (505)
Q Consensus 360 ~v~a~n~~G~~~~ 372 (505)
+|.|.|..|.|.+
T Consensus 70 ~V~a~~~~g~s~p 82 (90)
T d1fnha2 70 YLYTLNDNARSSP 82 (90)
T ss_dssp EEEEEETTEECCC
T ss_pred EEEEEeCCCCcCC
Confidence 9999999998864
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.7e-11 Score=89.69 Aligned_cols=93 Identities=30% Similarity=0.386 Sum_probs=68.5
Q ss_pred EEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CCCeEEEEECCEEecCC--CcEEEeeC-------CCEEEcCCCC
Q psy14886 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSG--GRRKIFEN-------GNLLISPVSR 151 (505)
Q Consensus 82 ~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~~~~~~--~~~~~~~~-------~~l~i~~v~~ 151 (505)
.|. .||.+.. + ....+.+|+.+.|.|.+.+. |.+.+.|++++..+... .++.+... ..|.|.++..
T Consensus 3 ~V~-~Pp~i~~-~--~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~ 78 (115)
T d2crya1 3 TVN-GPPIISS-T--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 78 (115)
T ss_dssp CCC-SSCCEEE-E--CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred EEe-cCCEEec-C--CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence 444 2555532 2 23457899999999999986 45689999999887643 22322211 2499999999
Q ss_pred CC-CEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 152 DD-SGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 152 ~d-~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
.| +|.|+|.|.|..|.....+.|.|..
T Consensus 79 ~D~~G~Y~C~A~N~~G~~~~~~~L~V~~ 106 (115)
T d2crya1 79 ADFQTIYNCTAWNSFGSDTEIIRLKEQG 106 (115)
T ss_dssp HHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred hcCCeEEEEEEEECCCeEEEEEEEEEEC
Confidence 98 7999999999999998888888754
|
| >d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: KIAA1568 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5e-09 Score=77.27 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=63.2
Q ss_pred EEeCCeEEEEeecCCCCCCCCceEEEEEEeCCC----CCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEE
Q psy14886 289 EVHKTSATIQWTDGATNGRPITHYKIIARTNWN----STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 364 (505)
Q Consensus 289 ~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~ 364 (505)
.++.++|.|+|+++.. +.++.+|.|.|+.... ..|........ ...++.+.+ |.|++.|.|+|.|.
T Consensus 26 ~~s~tsi~v~W~~p~~-~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~--------~~~s~~i~~-L~p~t~Y~f~V~A~ 95 (120)
T d1ujta_ 26 VLTPTTVQVTWTVDRQ-PQFIQGYRVMYRQTSGLQATSSWQNLDAKVP--------TERSAVLVN-LKKGVTYEIKVRPY 95 (120)
T ss_dssp CCBTTEEEEEEEESSC-CSSCCEEEEEEEESSSSSTTTCCEEEECCCT--------TCCEEEEES-CCSSEEEEEEEEEE
T ss_pred EeCCCeEEEEecCCCC-CCcEEEEEEEeeecccCCCCcceEEEEeccC--------ceeEEEECC-CCCCCEEEEEEEEE
Confidence 3578999999998854 5679999999987642 45665433221 233445554 99999999999999
Q ss_pred cCCCcCCCCCCCCCccCCCC
Q psy14886 365 NELGYGEPSSPSPQYNTPAD 384 (505)
Q Consensus 365 n~~G~~~~s~~~~~~~t~~~ 384 (505)
|..|.|++|... .++|.+.
T Consensus 96 n~~G~G~~S~~~-~~~T~e~ 114 (120)
T d1ujta_ 96 FNEFQGMDSESK-TVRTTEE 114 (120)
T ss_dssp SSSCCCCCCCCE-EEEECSS
T ss_pred eCCcCcCCCCCE-EEEeCCC
Confidence 999999988765 6667665
|
| >d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.2e-09 Score=73.74 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=60.5
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~ 360 (505)
+|.++.+..++.+++.|+|+++. +..+.+|.|+|+......+..... .......+.+.+|.|++.|.|+
T Consensus 3 pP~~l~~~~~~~~sv~l~W~~p~--~~~~~~y~v~y~~~~~~~~~~~~~---------~~~~~~~~~i~~L~p~t~Y~~~ 71 (91)
T d1fnfa2 3 PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEEDVAELS---------ISPSDNAVVLTNLLPGTEYVVS 71 (91)
T ss_dssp CCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEETTCTTCCEEEE---------ECTTCCEEEECSCCTTCEEEEE
T ss_pred cCCceEEEEeCCCEEEEEEEecC--CCCcceeEEEEEECCCCccEEEEE---------eCCCceEEEEeceeCCCEEEEE
Confidence 57889999999999999999874 456889999999876544433211 1123333444449999999999
Q ss_pred EEEEcCCCcCCC
Q psy14886 361 VIAGNELGYGEP 372 (505)
Q Consensus 361 v~a~n~~G~~~~ 372 (505)
|.|.|..|.|.+
T Consensus 72 V~a~~~~g~S~p 83 (91)
T d1fnfa2 72 VSSVYEQHESTP 83 (91)
T ss_dssp EEEEETTEECCC
T ss_pred EEEEcCCCCCCC
Confidence 999999998764
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=1.1e-09 Score=77.32 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCCceEEEEEEe-ccC-CCeEEEEECCEECcC---CCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 3 NQADLTWTCEAF-GVP-DVTYSWFRNGELLNS---ETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 3 ~G~~~~l~C~~~-~~p-~~~~~W~~~~~~l~~---~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
.|++|+|.|... ... ...|.|+|++..+.. ........++... .+++|.|.+++ .+|+|.|+|.+.+..|...
T Consensus 9 ~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~-~~DsG~Y~c~v~~~~g~~~ 87 (98)
T d1hnga1 9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT-RDDSGTYNVTVYSTNGTRI 87 (98)
T ss_dssp TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCC-GGGCEEEEEEEEETTCCEE
T ss_pred cCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCC-HHHCEEEEEEEEeCCCCEE
Confidence 699999999642 222 357999999887631 1122223345544 56899999999 9999999999998888753
Q ss_pred --eeEEEEEE
Q psy14886 77 --SSAQLRVL 84 (505)
Q Consensus 77 --~~~~l~v~ 84 (505)
..+.|.|+
T Consensus 88 ~~~~~~L~V~ 97 (98)
T d1hnga1 88 LNKALDLRIL 97 (98)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 45666665
|
| >d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Rim binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5.9e-10 Score=82.19 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=62.4
Q ss_pred CCCCCCCceEEEE-EeCCeEEEEeecCCCC--CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 277 GPPGLPGGVQVVE-VHKTSATIQWTDGATN--GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 277 ~~p~~p~~~~~~~-~~~~~v~l~w~~~~~~--~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
.+|.+|.++.+.. .+..++.|+|++|... +.....|.+.|+.............. ..+...+.+.+|.+
T Consensus 9 ~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~--------~~~~~~~~i~~L~~ 80 (117)
T d2cspa1 9 GPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFP--------TADSTAVELVRLRS 80 (117)
T ss_dssp CCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEECCT--------TCSEEEEESHHHHH
T ss_pred CCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeecccceeeeee--------ccceeeeeccCCCC
Confidence 4677888887744 4567899999998532 22223333333322222222211111 13344444555999
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~ 387 (505)
++.|.|+|+|.|..|.|..|... .+.+....|+
T Consensus 81 ~t~Y~v~V~A~n~~G~s~~S~~v-~i~t~~~vP~ 113 (117)
T d2cspa1 81 LEAKGVTVRTLSAQGESVDSAVA-AVPPELLVPP 113 (117)
T ss_dssp HTCSCBEEEEEESSCCCCCCSCB-CCCHHHHSCC
T ss_pred CcEEEEEEEEEcCCCcCCCCCCE-EeeCCCCCCc
Confidence 99999999999999999888775 4555444443
|
| >d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Granulocyte colony-stimulating factor (GC-SF) receptor species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.8e-09 Score=78.22 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=59.6
Q ss_pred CCCCCCCceEEE-EEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 277 GPPGLPGGVQVV-EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 277 ~~p~~p~~~~~~-~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.||++|.++.+. ....++++++|.++.+++.+ +.|.+.|.......|........ ...............+|.+++
T Consensus 3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~t 79 (107)
T d1cd9b1 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLP-TSFILKSFRSRADCQYQGDTIPD--CVAKKRQNNCSIPRKNLLLYQ 79 (107)
T ss_dssp CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCGGGCSCCCEEEE--EECCTTCCEEEEEGGGCCTTS
T ss_pred CccCCCcCCEEEEecCCCEEEEEEcCCCCCCCC-cceeEEEEEeecccceeeeeeee--eccccCccccEEEcCCCCcCc
Confidence 378899999854 55678999999999887776 56777776554322211100000 000011223334444599999
Q ss_pred eeEEEEEEEcCCCcCC
Q psy14886 356 TYEFKVIAGNELGYGE 371 (505)
Q Consensus 356 ~y~~~v~a~n~~G~~~ 371 (505)
.|.|||.|.|.+|.+.
T Consensus 80 ~Y~frV~A~N~~G~s~ 95 (107)
T d1cd9b1 80 YMAIWVQAENMLGSSE 95 (107)
T ss_dssp CEEEEEEEEETTEEEE
T ss_pred eEEEEEEEEeCCcccc
Confidence 9999999999999885
|
| >d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3.7e-09 Score=73.76 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeE-EeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWF-NVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+.+|.++++..++.+++.|+|+++. +++.+|.|.|+......+. .... ......+.+.+|.|++.|
T Consensus 2 ld~P~~l~v~~~s~~s~~l~W~~p~---~~~~~y~v~~~~~~~~~~~~~~~~----------~~~~~~~~i~~L~p~t~Y 68 (90)
T d1tena_ 2 LDAPSQIEVKDVTDTTALITWFKPL---AEIDGIELTYGIKDVPGDRTTIDL----------TEDENQYSIGNLKPDTEY 68 (90)
T ss_dssp CCCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEEETTCTTCCEEEEE----------ETTCCEEEECSCCTTCEE
T ss_pred CCCCCCcEEEEecCCEEEEEEEeCc---eEeccEEEEEEEcCCCceeEEEEe----------cCCcceeeEeeecCCCEE
Confidence 4678899999999999999999763 4688999999987654332 2211 123334444459999999
Q ss_pred EEEEEEEcCCCcCCCC
Q psy14886 358 EFKVIAGNELGYGEPS 373 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s 373 (505)
.|+|.|.|..|.+.++
T Consensus 69 ~~~V~a~~~~g~s~~~ 84 (90)
T d1tena_ 69 EVSLISRRGDMSSNPA 84 (90)
T ss_dssp EEEEEEEETTEECCCE
T ss_pred EEEEEEEeCCCEeCCE
Confidence 9999999999988754
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.5e-10 Score=79.16 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCC-----CCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL-----PLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~-----~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
..|++|+|.|.+. .|.+.|.|++++..+..... ......+... .+++|.|.+++ .+|+|.|+|.+.|..+.
T Consensus 8 ~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~-~~DsG~Y~c~~~n~~~t 85 (93)
T d1ccza1 8 VVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT-SSDEDEYEMESPNITDT 85 (93)
T ss_dssp ETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCC-GGGCEEEEEECTTCCSC
T ss_pred EECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecC-hhhCEEEEEEEECCCcE
Confidence 4799999999874 58889999999876631100 0011233333 34689999999 99999999999876554
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
. .+.|.|
T Consensus 86 ~--~~~l~V 92 (93)
T d1ccza1 86 M--KFFLYV 92 (93)
T ss_dssp E--EEEEEE
T ss_pred E--EEEEEE
Confidence 4 344444
|
| >d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=3.5e-09 Score=73.95 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=61.3
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~ 360 (505)
+|.++.+..++.+++.|+|.++. ..+.+|.++|+......|....... .....+.+.+ |.|++.|.|+
T Consensus 2 pP~~l~~~~v~~~si~l~W~~p~---~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~i~~-L~p~t~Y~~~ 69 (90)
T d1fnha1 2 APTDLKFTQVTPTSLSAQWTPPN---VQLTGYRVRVTPKEKTGPMKEINLA--------PDSSSVVVSG-LMVATKYEVS 69 (90)
T ss_dssp CCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSCSCCCEEEEC--------TTCCEEEECS-CCTTCEEEEE
T ss_pred CCCCEEEEEecCCEEEEEEEccc---eeccceEEEEEeeeCCCceEEEEeC--------CCCeEEEEec-ccCceEEEEE
Confidence 57889999999999999999763 3567899998877654443221111 1233444554 9999999999
Q ss_pred EEEEcCCCcCCCCCC
Q psy14886 361 VIAGNELGYGEPSSP 375 (505)
Q Consensus 361 v~a~n~~G~~~~s~~ 375 (505)
|+|.|..|.|.++..
T Consensus 70 V~a~n~~g~s~~~~~ 84 (90)
T d1fnha1 70 VYALKDTLTSRPAQG 84 (90)
T ss_dssp EEEEETTEECCCEEE
T ss_pred EEEEeCCCCcCCEeE
Confidence 999999999986643
|
| >d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Erythropoietin (EPO) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.8e-08 Score=72.51 Aligned_cols=91 Identities=19% Similarity=0.120 Sum_probs=62.9
Q ss_pred CCCCCCceEEEEEe-CCeEEEEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 278 PPGLPGGVQVVEVH-KTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 278 ~p~~p~~~~~~~~~-~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.|.||.++.+.... ...+.++|.+|.. .+..+..|.|+|+..+...|........ ....+.+.+ |.+++
T Consensus 4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~--------~~t~~~i~~-L~p~t 74 (105)
T d1erna2 4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILE--------GRTECVLSN-LRGRT 74 (105)
T ss_dssp CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECT--------TCCEEEECS-CCSSC
T ss_pred ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecC--------CccEEEEeC-CCCCc
Confidence 57899999887664 4569999998763 3456678999999886655544322211 223444444 99999
Q ss_pred eeEEEEEEEcC--CCcCCCCCCCC
Q psy14886 356 TYEFKVIAGNE--LGYGEPSSPSP 377 (505)
Q Consensus 356 ~y~~~v~a~n~--~G~~~~s~~~~ 377 (505)
.|.|+|+|.+. .|.|.+|+++.
T Consensus 75 ~Y~~rVRar~~~~~~~G~WSeWS~ 98 (105)
T d1erna2 75 RYTFAVRARMAEPSFGGFWSAWSE 98 (105)
T ss_dssp EEEEEEEEEECSSSCCBCCCCCCC
T ss_pred EEEEEEEEEECCCCCCCCCCCCCC
Confidence 99999999854 45677788763
|
| >d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=7e-09 Score=72.61 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=59.0
Q ss_pred CCCCCCceEEEEEe-CCeEEEEeecCCCCC----CCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 278 PPGLPGGVQVVEVH-KTSATIQWTDGATNG----RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 278 ~p~~p~~~~~~~~~-~~~v~l~w~~~~~~~----~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
.|.||.++.+.... ...+.|+|++|.... .-.+.|+|+|+..+...|....... ..... |.
T Consensus 1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~-------------~t~~~-L~ 66 (94)
T d3d85d3 1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTD-------------KTSAT-VI 66 (94)
T ss_dssp CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEES-------------SSEEE-EC
T ss_pred CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEecccc-------------ceEEE-ec
Confidence 48899999987654 466999999986432 2357899999988877777553321 12234 89
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
+++.|.|+|+|.+..|.|.+|+++
T Consensus 67 p~~~Y~v~VRa~~~~~~g~WSeWS 90 (94)
T d3d85d3 67 CRKNASISVRAQDRYYSSSWSEWA 90 (94)
T ss_dssp CCSSCEEEEEEEESSSCCCCCCCE
T ss_pred CCCCEEEEEEEecCCCCCCCccCc
Confidence 999999999999999999999885
|
| >d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=1.5e-08 Score=69.84 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=61.6
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.+|.++++..+..+++.|+|+++. +.+.+|.|+|+..+...+..... .....+.+.+ |.|++.|.|
T Consensus 2 ~~P~nl~v~~~~~~s~~l~W~~p~---~~~~~Y~v~~~~~~~~~~~~~~~----------~~~~~~~~~~-L~p~t~Y~v 67 (86)
T d1tdqa3 2 DSPRDLMVTASSETSISLIWTKAS---GPIDHYRITFTPSSGISSEVTVP----------RDRTSYTLTD-LEPGAEYII 67 (86)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCC---SCCSEEEEEEECSSSCCEEEEEE----------SSCSEEEECC-CCTTCCEEE
T ss_pred ccCCCCEEEEecCCEEEEEEeCCC---CCccceEEEEecccccceEEEeC----------CCccEEEECC-CccccEEEE
Confidence 467889999999999999999864 45789999999876554433221 1233455555 999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|.++
T Consensus 68 ~V~a~~~~~~s~p~ 81 (86)
T d1tdqa3 68 SITAERGRQQSLES 81 (86)
T ss_dssp EEEEEETTEECCCE
T ss_pred EEEEEcCCCEECCE
Confidence 99999999988654
|
| >d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.5e-09 Score=75.84 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=65.6
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
+.|.++.++.+..+..+++.|+|+++. +++.+|.|+++......+........... ....+....+.+.+|.|++.
T Consensus 2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~---~~~~~y~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~L~p~t~ 77 (101)
T d2cuia1 2 GSRPRLSQLSVTDVTTSSLRLNWEAPP---GAFDSFLLRFGVPSPSTLEPHPRPLLQRE-LMVPGTRHSAVLRDLRSGTL 77 (101)
T ss_dssp CCCCCCCCCEEESCCSSCEEEECCCCT---TSCSEEEEEEECCCCSSSCCCSSCCCCEE-EEEETTCCEEEECSCCTTCE
T ss_pred CCccCCCCcEEEEECCCEEEEEEEecc---ccccceEEEEEecCCCceeeccCCcceeE-eecccceeEEEeCCCCcCCE
Confidence 356778899999999999999998763 45789999998876544443322222111 12223333344445999999
Q ss_pred eEEEEEEEcCCCcCCCC
Q psy14886 357 YEFKVIAGNELGYGEPS 373 (505)
Q Consensus 357 y~~~v~a~n~~G~~~~s 373 (505)
|.|+|.|.|..|.|.++
T Consensus 78 Y~~~V~a~~~~g~g~~~ 94 (101)
T d2cuia1 78 YSLTLYGLRGPHKADSI 94 (101)
T ss_dssp EEEEEEEECSSSEEEEE
T ss_pred EEEEEEEEeCCcEeCCe
Confidence 99999999999998754
|
| >d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1e-08 Score=72.18 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=60.9
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.+|.++++..++.+++.|+|++|. +.+.+|.+.|+......+...... . .....+.+. +|.|++.|.|
T Consensus 3 d~P~~l~v~~vt~~sv~l~W~~p~---~~~~~y~i~~~~~~~~~~~~~~~~-~-------~~~~~~~i~-~L~p~t~Y~~ 70 (94)
T d1j8ka_ 3 DRPKGLAFTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIHELFPAP-D-------GEEDTAELQ-GLRPGSEYTV 70 (94)
T ss_dssp CCCCCCEEEEEETTEEEEECCCCS---SCCSCEEEEEEETTTEEEEECCCC-C-------SSCCEEEEC-SCCCCSEEEE
T ss_pred CCCCCCEEEEecCCEEEEEEeCCC---ccccceEEEEEeecCCCceEEEec-C-------CCccEEEEC-CCCCCCEEEE
Confidence 467889999999999999999874 357889999988765544332111 1 123344554 4999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|.+.
T Consensus 71 ~V~a~~~~g~S~p~ 84 (94)
T d1j8ka_ 71 SVVALHDDMESQPL 84 (94)
T ss_dssp EEEECSSSCCCCCE
T ss_pred EEEEEeCCCCcCCE
Confidence 99999999987654
|
| >d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-2 receptor beta chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=8.3e-09 Score=74.34 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCC--CCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNG--RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~--~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
.+.||.++.+..+..+++.|+|.++...+ .....|.++++..... |..... .........+.+.+|.|++
T Consensus 2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~-~~~~~~-------~~~~~~~~~~~i~~L~p~t 73 (104)
T d2b5ib2 2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHT-WEEAPL-------LTLKQKQEWICLETLTPDT 73 (104)
T ss_dssp CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSC-STTSCC-------EEECSCCCEEEECSCCTTC
T ss_pred ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEeccccc-ceeeeE-------EecCCCcEEEEECCCCCCC
Confidence 36789999999999999999999887443 4456788888776532 211100 0011223333444599999
Q ss_pred eeEEEEEEEcCCCc-CCCCCCC
Q psy14886 356 TYEFKVIAGNELGY-GEPSSPS 376 (505)
Q Consensus 356 ~y~~~v~a~n~~G~-~~~s~~~ 376 (505)
.|.|+|+|.|..|. |.+|+++
T Consensus 74 ~Y~~rVra~~~~g~~g~wS~wS 95 (104)
T d2b5ib2 74 QYEFQVRVKPLQGEFTTWSPWS 95 (104)
T ss_dssp EEEEEEEEEESCCSSCCCCCCC
T ss_pred EEEEEEEEEECCCCCCCCCCCc
Confidence 99999999999985 6667665
|
| >d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.6e-08 Score=70.57 Aligned_cols=80 Identities=25% Similarity=0.247 Sum_probs=59.1
Q ss_pred ceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEE
Q psy14886 284 GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIA 363 (505)
Q Consensus 284 ~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a 363 (505)
++++..++.+++.|+|++|. +++.+|.|+|+......+..... +. .....+.+. +|.|++.|.|+|.|
T Consensus 2 nl~v~~~t~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~~~~~~~~-~~-------~~~t~~~l~-~L~p~t~Y~~~V~a 69 (91)
T d1fnaa_ 2 DLEVVAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQEFT-VP-------GSKSTATIS-GLKPGVDYTITVYA 69 (91)
T ss_dssp CCEEEEECSSCEEEECCCCS---SCCSEEEEEEEETTCCSCCEEEE-EE-------TTCCEEEEC-SCCTTCEEEEEEEE
T ss_pred CCEEEEeCCCEEEEEEEccc---eEecEEEEEEEcCCCCceeEEEE-eC-------CCccEEEeC-CCCCCCEEEEEEEE
Confidence 67888999999999999773 45789999999876554432211 11 123344454 59999999999999
Q ss_pred EcCCCcCCCCCC
Q psy14886 364 GNELGYGEPSSP 375 (505)
Q Consensus 364 ~n~~G~~~~s~~ 375 (505)
.|..|.++++..
T Consensus 70 ~~~~g~s~~~s~ 81 (91)
T d1fnaa_ 70 VTGRGDSPASSK 81 (91)
T ss_dssp ECTTCCSSCSCC
T ss_pred EeCCccCCCcCC
Confidence 999999876543
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=5.6e-09 Score=73.32 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=55.5
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC------------CCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS------------GGRRKIF-ENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~------------~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+....|++|+|.|... .|.+.|.|++++..+.. ..+..+. .+++|.|.+++.+|+|.|.|.+.|.
T Consensus 4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~ 82 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (93)
T ss_dssp EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence 46688999999999864 57789999998876531 1122221 2457999999999999999999876
Q ss_pred CCceeeeEEEEE
Q psy14886 165 HGMDESKGRLIV 176 (505)
Q Consensus 165 ~g~~~~~~~l~v 176 (505)
.+... +.|.|
T Consensus 83 ~~t~~--~~l~V 92 (93)
T d1ccza1 83 TDTMK--FFLYV 92 (93)
T ss_dssp CSCEE--EEEEE
T ss_pred CcEEE--EEEEE
Confidence 65443 44444
|
| >d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=1.8e-08 Score=70.66 Aligned_cols=83 Identities=19% Similarity=0.131 Sum_probs=62.9
Q ss_pred CCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEE-eeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN-VSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 279 p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
.++|.++.+..++.+++.|+|.++. +++.+|.+.|+......|.. ..... ....+.+.+ |.|++.|
T Consensus 4 ~~~P~~l~v~~v~~~si~v~W~~p~---~~~~~y~i~~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~p~t~Y 70 (93)
T d1tdqa1 4 IDGPTQILVRDVSDTVAFVEWTPPR---AKVDFILLKYGLVGGEGGKTTFRLQP---------PLSQYSVQA-LRPGSRY 70 (93)
T ss_dssp SCCCEEEEEEEECSSCEEEEEECCS---SCCSEEEEEEEESSSSCCCEEEEECT---------TCSEEEECS-CCTTCEE
T ss_pred CCcCCCCEEEEeCCCEEEEEEEccc---cCCCceEEEEEeccCcceeeEEEeCC---------CceEEEEeC-cccceEE
Confidence 4678899999999999999999763 46789999999887654432 21111 223444454 9999999
Q ss_pred EEEEEEEcCCCcCCCCC
Q psy14886 358 EFKVIAGNELGYGEPSS 374 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~ 374 (505)
.|+|.|.|..|.|.++.
T Consensus 71 ~v~V~a~~~~g~s~~~~ 87 (93)
T d1tdqa1 71 EVSISAVRGTNESDASS 87 (93)
T ss_dssp EEEEEEEETTEECCCEE
T ss_pred EEEEEEEeCCCCcCCEE
Confidence 99999999999987543
|
| >d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.80 E-value=1.9e-08 Score=69.52 Aligned_cols=80 Identities=11% Similarity=0.187 Sum_probs=59.9
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
++|.++++..++.+++.|+|++|. +.+.+|.|.|+..+...+.. ... .....+.+.+ |.|++.|.|
T Consensus 1 DaP~~l~v~~~t~~sv~v~W~~p~---~~~~~Y~v~~~~~~~~~~~~-~~~---------~~~~~~~~~~-L~p~t~Y~v 66 (87)
T d1qr4a1 1 DNPKDLEVSDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKKNEM-EIP---------VDSTSFILRG-LDAGTEYTI 66 (87)
T ss_dssp CCCEEEEEESCCSSEEEEEEECCS---SCCSEEEEEEECTTCCEEEE-EEC---------TTCSEEEEES-CCSSCEEEE
T ss_pred CcCcCcEEEEecCCEEEEEEECCC---CCcceeEEEeecCCcceeEE-eCC---------CCcCEEEECC-CCcCCEEEE
Confidence 367889999999999999999874 35789999998775443222 111 1223455555 999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|.++
T Consensus 67 ~V~a~~~~~~s~~~ 80 (87)
T d1qr4a1 67 SLVAEKGRHKSKPT 80 (87)
T ss_dssp EEEEESSSCBCCCE
T ss_pred EEEEEcCCCCccCE
Confidence 99999999988754
|
| >d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Tenascin-X species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.5e-08 Score=71.07 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
++|.++.+..+..+++.|+|+++. +++.+|.|.|+..+.. +...... .....+...+|.|++.|.|
T Consensus 3 ~~P~~l~~~~~~~~sv~l~W~~p~---~~~~~Y~v~~~~~~~~-~~~~~~~----------~~~~~~~i~~L~p~t~Y~~ 68 (93)
T d2cuma1 3 EAPRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQ-TQEILLP----------GGITSHQLLGLFPSTSYNA 68 (93)
T ss_dssp CCCEEEEEESCCSSCEEEEEECCS---SCCSEEEEEEECTTSC-EEEEEEC----------SSCSEEEECSCCTTCEEEE
T ss_pred CcCCCCEEEEeCCCEEEEEEEccc---cccccEEEEEEccccc-cEEEEEC----------CCccEEEEeCccCCCEEEE
Confidence 467889999999999999999874 4588999999886543 3222111 2233344455999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy14886 360 KVIAGNELGYGEPSS 374 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~ 374 (505)
+|.|.|..|.|.++.
T Consensus 69 ~V~a~~~~g~s~~~~ 83 (93)
T d2cuma1 69 RLQAMWGQSLLPPVS 83 (93)
T ss_dssp EEEEEBTTBCCCCEE
T ss_pred EEEEEeCCCCCCCEE
Confidence 999999999887653
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.9e-09 Score=77.50 Aligned_cols=86 Identities=9% Similarity=0.109 Sum_probs=58.9
Q ss_pred ceEEEeeccEEEEEEeee-cCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 189 KITIAAHRNLQLRCSAHT-EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
...+..|+.++|.|.+.+ .+.|.+.+.|++++..+......... .......+.|.+.....++.|.|+|.|.|..|..
T Consensus 11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~-~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~ 89 (106)
T d1zxqa1 11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA-PAPQEATATFNSTADREDGHRNFSCLAVLDLMSR 89 (106)
T ss_dssp SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST-TCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEe-ecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence 346778999999999987 45567889999999988643211111 0111112357777777888999999999998865
Q ss_pred EEEEEEEE
Q psy14886 268 STKTTVIV 275 (505)
Q Consensus 268 ~~~~~l~v 275 (505)
...+.+.+
T Consensus 90 ~~~~~~~~ 97 (106)
T d1zxqa1 90 GGNIFHKH 97 (106)
T ss_dssp TCCEEEEE
T ss_pred CCeeEecc
Confidence 54554444
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=4.8e-09 Score=75.30 Aligned_cols=82 Identities=9% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCC---------CC---CCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSE---------TL---PLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~---------~~---~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++|+|.|.........+.|+|+....... .. .....+|..+ .+++|.|.+++ .+|+|.|+|.
T Consensus 11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~-~~D~G~Y~c~ 89 (107)
T d1l6za1 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT-MKDMGVYTLD 89 (107)
T ss_dssp CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCC-GGGCEEEEEE
T ss_pred ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCC-chhCEEEEEE
Confidence 468999999998543336889999965422111 00 0112456665 67899999999 9999999999
Q ss_pred EEcccC-ceEeeEEEEE
Q psy14886 68 AKNQLK-TRYSSAQLRV 83 (505)
Q Consensus 68 ~~~~~~-~~~~~~~l~v 83 (505)
+.+..+ .....+.|.|
T Consensus 90 v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 90 MTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEETTEEECCCCEEECC
T ss_pred EEECCCCEEEEEEEEEE
Confidence 976543 3334455544
|
| >d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.3e-08 Score=74.67 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=61.4
Q ss_pred CCCCCCCceEEEEEeCCeEEEEeecCCCCC------CCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeee
Q psy14886 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNG------RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENV 350 (505)
Q Consensus 277 ~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~------~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (505)
..|.+|.++.+. ...+.+.|+|.+|...+ ..+..|.++|+..+...|........ .....+...+
T Consensus 4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 74 (114)
T d2gysa2 4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN--------TSQATLGPEH 74 (114)
T ss_dssp BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEES--------SSEEEECTTT
T ss_pred ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeecc--------CceEEEEeCC
Confidence 368899999984 67789999999986432 23457999999876544332211111 2233444445
Q ss_pred ccCCceeEEEEEEEcCCCcC---CCCCCC
Q psy14886 351 LVPWSTYEFKVIAGNELGYG---EPSSPS 376 (505)
Q Consensus 351 L~~~~~y~~~v~a~n~~G~~---~~s~~~ 376 (505)
|.+++.|.|||+|.|..|.+ .+|+++
T Consensus 75 L~p~t~Y~~rVRa~~~~g~~~~g~wS~WS 103 (114)
T d2gysa2 75 LMPSSTYVARVRTRLAPGSRLSGRPSKWS 103 (114)
T ss_dssp CCTTCEEEEEEEEEECTTSSCCBCCCCCC
T ss_pred CCCCcEEEEEEEEEeCCCCCCCCCccCCc
Confidence 99999999999999998874 456664
|
| >d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Ciliary neurotrophic factor receptor alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=2e-08 Score=72.85 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCCCCCceEEEEE--eCCeEEEEeecCCCC---CCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 278 PPGLPGGVQVVEV--HKTSATIQWTDGATN---GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 278 ~p~~p~~~~~~~~--~~~~v~l~w~~~~~~---~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
.|.||.++.+..+ ...++.|+|++|... ......|.++++..+...|...... ....+. +.+|.
T Consensus 7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----------~~~~~~-i~~L~ 75 (109)
T d1uc6a_ 7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELS----------NGTAHT-ITDAY 75 (109)
T ss_dssp CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEES----------SCSEEE-ETTCC
T ss_pred ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccC----------CceeEE-eCCCC
Confidence 5889988888655 567899999988632 3445789999998888878665332 222344 44599
Q ss_pred CCceeEEEEEEEcCCCcCCCCCCC
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~~~ 376 (505)
+++.|.|||+|.|. |.|.+|+++
T Consensus 76 ~~t~Y~~rVrA~~~-~~g~wS~WS 98 (109)
T d1uc6a_ 76 AGKEYIIQVAAKDN-EIGTWSDWS 98 (109)
T ss_dssp SSSCEEEEEECCBS-SSCCCCCCC
T ss_pred CCCEEEEEEEEEEC-CCCCcCCCC
Confidence 99999999999885 567777775
|
| >d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Fibronectin, different Fn3 modules species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=8.5e-09 Score=71.67 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCCceEEEEEe--CCeEEEEeecCCCCCCCCceEEEEEEeCCC-CCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 281 LPGGVQVVEVH--KTSATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 281 ~p~~~~~~~~~--~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+|..+.+.... .+++.|+|++|. +..|.+|.|+|+..+. ..|..... .+....+.+.+|.|++.|
T Consensus 2 aP~~~~vt~~~~~~~s~~vsW~~P~--~~~i~~Y~i~y~~~~~~~~~~~~~v----------~~~~~~~~l~gL~P~t~Y 69 (93)
T d1owwa_ 2 GPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWKEATI----------PGHLNSYTIKGLKPGVVY 69 (93)
T ss_dssp CCCEEECCCCSSCTTCEEEEEECCS--SSCEEEEEEEEEETTCSSCCEEEEE----------CSSCCEEEECSCCSSEEE
T ss_pred cCcccEEEEccCCCCEEEEEeeccc--ccceeEEEEEEeeccccceeeeecc----------CCCccEEEECCcccCcEE
Confidence 34455554443 479999999874 4578999999998754 34544321 133333444459999999
Q ss_pred EEEEEEEcCCCcCCCCC
Q psy14886 358 EFKVIAGNELGYGEPSS 374 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~ 374 (505)
.|+|.|.|..|.+..+.
T Consensus 70 ~v~v~av~~~G~s~~~~ 86 (93)
T d1owwa_ 70 EGQLISIQQYGHQEVTR 86 (93)
T ss_dssp EEEEEEEESSSCEEEEE
T ss_pred EEEEEEEeCCCccCcEE
Confidence 99999999999987553
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=4.4e-08 Score=73.20 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCCCceEEEEEEecc---CCCeEEEEECCEECc-----CC-----CCCCCCCCcEEEE-------CCeEEEEcCCCCCCC
Q psy14886 2 DNQADLTWTCEAFGV---PDVTYSWFRNGELLN-----SE-----TLPLEDQDRYFIQ-------DNVLTIRYLNPERDP 61 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~---p~~~~~W~~~~~~l~-----~~-----~~~~~~~~~~~~~-------~~~L~i~~~~~~~d~ 61 (505)
.+|++++|.|.+... ....+.|++.+.... .. ........|.... +.+|.|.+++ .+|+
T Consensus 15 ~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~-~~D~ 93 (126)
T d1pkoa_ 15 LVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR-FSDE 93 (126)
T ss_dssp ETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC-GGGC
T ss_pred EcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc-hhHC
Confidence 479999999998642 246799999643210 00 1111122344331 2589999999 9999
Q ss_pred eEEEEEEEcccCceEeeEEEEEEe
Q psy14886 62 AMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 62 G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
|.|+|.+.+..+.....+.|.|.+
T Consensus 94 G~Y~C~v~~~~~~~~~~v~L~V~~ 117 (126)
T d1pkoa_ 94 GGYTCFFRDHSYQEEAAVELKVED 117 (126)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEEEEEEEECCCEEEEEEEEEEeC
Confidence 999999998777777778888874
|
| >d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=3.4e-09 Score=79.32 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCCCC--------------eEEeeeccccceeeeecCcee
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNST--------------WFNVSEHVIGKEVDRYTGRKE 344 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~--------------w~~~~~~~~~~~~~~~~~~~~ 344 (505)
..|.++.+...+.++|.|+|++|.. +++.+.+|.|.|+...... |....................
T Consensus 3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
T d2dtge3 3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP 82 (125)
T ss_dssp CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence 3567888999999999999998874 3477999999998764322 221111100001111123334
Q ss_pred eEEeeeccCCceeEEEEEEEcCCCc
Q psy14886 345 ASIENVLVPWSTYEFKVIAGNELGY 369 (505)
Q Consensus 345 ~~~~~~L~~~~~y~~~v~a~n~~G~ 369 (505)
.+.+.+|.|++.|.|+|+|.|..|.
T Consensus 83 ~~~l~~L~p~T~Y~~~V~A~n~~G~ 107 (125)
T d2dtge3 83 GWLMRGLKPWTQYAIFVKTLVTFSD 107 (125)
T ss_dssp EEEECSCCSSCBCCBEEEECCCCCS
T ss_pred EEEECCCccCCEEEEEEEEEeCCCc
Confidence 4445559999999999999999995
|
| >d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interferon-gamma receptor alpha chain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.7e-08 Score=71.61 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=57.2
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFK 360 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~ 360 (505)
+|.++++...... ..|+|++|...++.+..|.++........|........ .....+...+|.++..|.||
T Consensus 3 ~P~nv~v~s~n~~-~~L~W~pP~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~Y~fR 73 (98)
T d1fyhb1 3 TPTNVTIESYNMN-PIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINIS--------HHYCNISDHVGDPSNSLWVR 73 (98)
T ss_dssp CCEEEEEECBSSC-CEEEEECCCCSSCCEEEEEEEETTCSSSCCEEEEEEES--------SSEEECGGGCCSTTSCEEEE
T ss_pred cCCceEEEEeCCc-EEEEECCCCCCCCCceeEEEEEeccccceeEEeeeecc--------cceeeeEecccCCCCEEEEE
Confidence 6788888766544 46999998877776655555444333344433322222 22222333349999999999
Q ss_pred EEEEcCCCcCCCCCCC
Q psy14886 361 VIAGNELGYGEPSSPS 376 (505)
Q Consensus 361 v~a~n~~G~~~~s~~~ 376 (505)
|+|.|..|.|.++...
T Consensus 74 V~A~n~~g~S~ws~s~ 89 (98)
T d1fyhb1 74 VKARVGQKESAYAKSE 89 (98)
T ss_dssp EEEEETTEECCCEECC
T ss_pred EEEEcCCcccCCccCC
Confidence 9999999999887654
|
| >d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.3e-08 Score=72.63 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCC-CCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCce
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~-~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 356 (505)
++.|| ++.+.. ..+++.|+|.+|...+ ..+..|+|+|+......+........ ....+.+. +|.|++.
T Consensus 5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~--------~~~~~~l~-~L~p~t~ 73 (100)
T d2gysa4 5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQ--------NAHSMALP-ALEPSTR 73 (100)
T ss_dssp CCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEE--------SCSEEECC-CCCSSCC
T ss_pred cCCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccC--------CceEEEeC-CCCCCCe
Confidence 45566 577654 5578999999887543 45678999998765432211111111 22344444 4999999
Q ss_pred eEEEEEEEcCCCc--CCCCCCCC
Q psy14886 357 YEFKVIAGNELGY--GEPSSPSP 377 (505)
Q Consensus 357 y~~~v~a~n~~G~--~~~s~~~~ 377 (505)
|.|||+|.+..|. |.+|+++.
T Consensus 74 Y~~rVRa~~~~g~~~g~WSeWS~ 96 (100)
T d2gysa4 74 YWARVRVRTSRTGYNGIWSEWSE 96 (100)
T ss_dssp CEEEEEEEECCTTCCBCCCCCCC
T ss_pred EEEEEEEEECCCCCCCCccCCCC
Confidence 9999999988874 78888863
|
| >d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Interleukin-10 receptor 1, IL-10R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.7e-08 Score=68.20 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
.|. |.++++. .......|+|+||...+. ...|.|+++..+...|..+...... ..........+|.++..|
T Consensus 4 lP~-P~nv~~~-s~n~~~~L~W~pp~~~g~-~~~Y~Ve~~~~~~~~W~~v~~c~~~------t~~~~~~~~~~l~~~~~Y 74 (99)
T d1y6kr1 4 LPS-PPSVWFE-AEFFHHILHWTPIPQQSE-STCYEVALLRYGIESWNSISQCSQT------LSYDLTAVTLDLYHSNGY 74 (99)
T ss_dssp CCC-CSCEEEE-EETTEEEEEECCCTTCCT-TCEEEEEEEETTSCCCEEEEEEESS------SEEECGGGGTTGGGSSCE
T ss_pred CCC-CCcceEE-EECCEEEEEEcCCCCcCC-CCEEEEEEEECCCcceEEEEeeccc------cccceeeeeeecCCCCEE
Confidence 354 5578874 444577899998876555 4679999999889999987543220 011122233348899999
Q ss_pred EEEEEEEcCCCcCCCCCCC
Q psy14886 358 EFKVIAGNELGYGEPSSPS 376 (505)
Q Consensus 358 ~~~v~a~n~~G~~~~s~~~ 376 (505)
.|||+|.|..|.|.++...
T Consensus 75 ~fRVrA~n~~g~S~Ws~t~ 93 (99)
T d1y6kr1 75 RARVRAVDGSRHSQWTVTN 93 (99)
T ss_dssp EEEEEEEETTEECCCEECS
T ss_pred EEEEEEEcCCCcCCCcccC
Confidence 9999999999999876543
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=1.5e-07 Score=70.16 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred ceEEeeCCCeEEEEeecCCC---CCCeEEEEECCEE--e---------c------CCCcEEEee------CCCEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNI--I---------G------SGGRRKIFE------NGNLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~---p~~~i~W~~~g~~--~---------~------~~~~~~~~~------~~~l~i~~v~ 150 (505)
..+.+..|++++|.|..... ....+.|++.+.. + . ...+..... +.+|.|.+++
T Consensus 10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 89 (126)
T d1pkoa_ 10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR 89 (126)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence 33678899999999986432 2347999985421 0 0 011222221 1259999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
.+|+|.|.|.+.+..+.....+.|.|.+++
T Consensus 90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~ 119 (126)
T d1pkoa_ 90 FSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119 (126)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred hhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence 999999999999988877777888886643
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=6.8e-08 Score=69.09 Aligned_cols=76 Identities=25% Similarity=0.398 Sum_probs=55.5
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEECCEEec-------------------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIG-------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~-------------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
+.+|++|.|.|.........+.|+|...... -.+|..+..+++|.|.+++.+|+|.|+|.+
T Consensus 11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v 90 (107)
T d1l6za1 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM 90 (107)
T ss_dssp CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence 5689999999985444456899998543210 024667777889999999999999999999
Q ss_pred EcCCCc-eeeeEEEEE
Q psy14886 162 TNVHGM-DESKGRLIV 176 (505)
Q Consensus 162 ~~~~g~-~~~~~~l~v 176 (505)
.+..+. ....+.|.|
T Consensus 91 ~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 91 TDENYRRTQATVRFHV 106 (107)
T ss_dssp EETTEEECCCCEEECC
T ss_pred EECCCCEEEEEEEEEE
Confidence 876543 344455554
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=6.7e-08 Score=68.05 Aligned_cols=68 Identities=21% Similarity=0.377 Sum_probs=46.3
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEE--CcCC-----CCCCCCCCcEEE-------ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGEL--LNSE-----TLPLEDQDRYFI-------QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~--l~~~-----~~~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
++|++++|.|.........+.|++.... +... .......+|+.. .+.+|.|.+++ .+|+|.|.|.
T Consensus 7 ~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~-~~DsG~Y~C~ 85 (97)
T d2nxyb1 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLK-IEDSDTYICE 85 (97)
T ss_dssp ETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCC-GGGCEEEEEE
T ss_pred EcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCC-hHHCEEEEEE
Confidence 5899999999987666778999985321 1100 001112334432 12479999999 9999999999
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+.+
T Consensus 86 v~~ 88 (97)
T d2nxyb1 86 VED 88 (97)
T ss_dssp ETT
T ss_pred Eec
Confidence 864
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=3.4e-07 Score=68.00 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=54.4
Q ss_pred CCCCceEEEEEEeccC----CCeEEEEECCEECc--------------CCCCCCCCCCcEEEE-------CCeEEEEcCC
Q psy14886 2 DNQADLTWTCEAFGVP----DVTYSWFRNGELLN--------------SETLPLEDQDRYFIQ-------DNVLTIRYLN 56 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p----~~~~~W~~~~~~l~--------------~~~~~~~~~~~~~~~-------~~~L~i~~~~ 56 (505)
.+|++++|.|.+...+ ...+.|++...... .........+|.... ..+|.|.+++
T Consensus 17 ~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~ 96 (124)
T d1eaja_ 17 AKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQ 96 (124)
T ss_dssp ETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCC
T ss_pred ECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcccE
Confidence 4799999999986432 24689998311100 001111123455542 2479999999
Q ss_pred CCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 57 PERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 57 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 97 -~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 97 -LSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp -GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -EccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 999999999999877766666777665
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=5.6e-07 Score=66.79 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=55.7
Q ss_pred ceEEeeCCCeEEEEeecCCCC----CCeEEEEEC--CEE--------------ec-----CCCcEEEeeC------CCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP----KPKFVWKKD--GNI--------------IG-----SGGRRKIFEN------GNLL 145 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~--g~~--------------~~-----~~~~~~~~~~------~~l~ 145 (505)
..+.+.+|++++|.|.....+ ...+.|++. +.. .. -.++.....+ .+|+
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 446788999999999975432 236899862 110 00 0123333221 3699
Q ss_pred EcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 146 i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 99999999999999999888777777777764
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=8.5e-07 Score=63.66 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCCCCceEEEEEEec-cCC--CeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFG-VPD--VTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~--~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|+.++|.|.+.+ .|. +.+.|+++++.+....... ...+.+ ...+.|.+.... .++...|+|.|.+..+.
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~-~~~s~l~~~~~~-~D~g~~ltC~a~~~~~~ 89 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE-TKSLEVTFTPVI-EDIGKVLVCRAKLHIDE 89 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCE-EEEEEEEECCCG-GGTTCEEEEEEEECSCC
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcc-eeeEEEEccCCh-HHCCcEEEEEEEcCcCC
Confidence 368999999999975 674 4799999998876332211 111222 223466666555 55555899999976543
|
| >d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Fibronectin type III family: Fibronectin type III domain: Insulin receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.3e-07 Score=76.69 Aligned_cols=87 Identities=9% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEE
Q psy14886 387 YQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 387 ~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
|.+|.++.+...+.++|.|+|++ +.+.||.|.+|.|+|+..+...+.... .......|.+++.|.++|.
T Consensus 3 Ps~P~~~~~~~~s~~si~vsW~p--P~~~ng~i~~Y~V~~~~~~~~~~~~~~---------~~~~~~~~~~~~~y~~~v~ 71 (196)
T d2dtge2 3 PSVPLDPISVSNSSSQIILKWKP--PSDPNGNITHYLVFWERQAEDSELFEL---------DYCLKGLKLPSRTWSPPFE 71 (196)
T ss_dssp CCCCEEEEEEECSSSCEEEEEEC--CCCSSSSCSEEECCEEEECCCCSCTTC---------SSSCSCCCCCC--------
T ss_pred CcCCcCCEEEeccCCEEEEEEEC--CCCCCCcEEEEEEEEEcCCCCCceeEE---------eeEEeccccceeEEEEEEE
Confidence 45899999999999999999998 556789999999999987643332100 1122334667899999999
Q ss_pred EecCCCCCCCCceEEEee
Q psy14886 467 AINDVGPGPESEVVTIWH 484 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t 484 (505)
|.|..|.+..+......+
T Consensus 72 ~~~~~~~~~~~~~~~~~~ 89 (196)
T d2dtge2 72 SEDSQKHNQSEYEDSAGE 89 (196)
T ss_dssp ------------------
T ss_pred EEcCCccccCcCCcccee
Confidence 999999987776555543
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.27 E-value=1.1e-06 Score=62.37 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=47.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|...+.....+.|||. +..+. ..........++... ..+|.|.+++ .+|+|.|.|.+.
T Consensus 13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 91 (107)
T d1ospl1 13 VSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQ-TEDVATYFCQQY 91 (107)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCC-GGGCSEEEEEEC
T ss_pred ECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccc-cccCCcEEEeec
Confidence 47899999999987654557999992 22110 011122244566653 2589999999 999999999875
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (107)
T d1ospl1 92 W 92 (107)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1e-06 Score=64.27 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=52.4
Q ss_pred CCCCceEEEEEEecc---CCCeEEEEECCE--E---C--cCCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEE
Q psy14886 2 DNQADLTWTCEAFGV---PDVTYSWFRNGE--L---L--NSETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~---p~~~~~W~~~~~--~---l--~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~ 65 (505)
.+|++|+|.|..... ....+.|+|... . + ..........+++.+. ..+|.|.+++ .+|+|.|.
T Consensus 12 ~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~-~~DsG~Y~ 90 (116)
T d1xeda_ 12 VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS-QDDSGRYK 90 (116)
T ss_dssp ETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCC-GGGCEEEE
T ss_pred cCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhC-cCCCEEEE
Confidence 589999999997532 245678998421 1 1 0111111233455442 1379999999 99999999
Q ss_pred EEEEcccCceEeeEEEEEEe
Q psy14886 66 CRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 66 C~~~~~~~~~~~~~~l~v~~ 85 (505)
|.+..........+.|.|.+
T Consensus 91 C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 91 CGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp EEESCGGGCCEEEEEEEEEC
T ss_pred EEEEcCCCCceEeEEEEEEC
Confidence 99875444444457777775
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2e-06 Score=60.23 Aligned_cols=65 Identities=25% Similarity=0.501 Sum_probs=45.7
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCE--EecC------------CCcEEEee------CCCEEEcCCCCCCCEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGS------------GGRRKIFE------NGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~--~~~~------------~~~~~~~~------~~~l~i~~v~~~d~G~y~ 158 (505)
+...+|++|+|.|.........+.|++... .+.. ..+..... +.+|.|.+++.+|+|.|.
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~ 83 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence 456799999999998776667899998432 2111 11221111 125999999999999999
Q ss_pred EEEEc
Q psy14886 159 CTATN 163 (505)
Q Consensus 159 C~~~~ 163 (505)
|.+.+
T Consensus 84 C~v~~ 88 (97)
T d2nxyb1 84 CEVED 88 (97)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99964
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.24 E-value=1.6e-06 Score=61.54 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=46.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|++++|.|.........+.|||. |+... ..........|+... ..+|.|.+++ .+|+|.|.|.+.
T Consensus 13 v~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 91 (106)
T d1i8ka_ 13 VATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTL-SEDVGDYYCLQS 91 (106)
T ss_dssp CCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCc-cccCEEEeEecC
Confidence 57999999999986555567999983 22111 001111234455542 2479999999 999999999865
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (106)
T d1i8ka_ 92 F 92 (106)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.2e-06 Score=59.30 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=46.6
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEE----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK----IFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
.|..|++|+|.|... .+...+.|+++|.......... ......+.|.+++..|+|.|+|...+.....
T Consensus 17 ~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S 88 (99)
T d1ucta1 17 VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRF 88 (99)
T ss_dssp EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCccc
Confidence 588999999999875 3456889998664211100101 1122358999999999999999998766543
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=2.4e-06 Score=62.66 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=50.1
Q ss_pred CCCCceEEEEEEecc----CCCeEEEEEC--CE----ECc---C----CCCCCCCCCcEEEE------CCeEEEEcCCCC
Q psy14886 2 DNQADLTWTCEAFGV----PDVTYSWFRN--GE----LLN---S----ETLPLEDQDRYFIQ------DNVLTIRYLNPE 58 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~----p~~~~~W~~~--~~----~l~---~----~~~~~~~~~~~~~~------~~~L~i~~~~~~ 58 (505)
..|++++|.|.+... ....+.|+|. +. .+. . ........+|+... +.+|.|.+++ .
T Consensus 12 ~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~-~ 90 (119)
T d1neua_ 12 AVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLD-Y 90 (119)
T ss_dssp ETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCC-G
T ss_pred eeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCC-h
Confidence 479999999998531 2458999882 11 110 0 01111133566542 2479999999 9
Q ss_pred CCCeEEEEEEEcccC--ceEeeEEEEEE
Q psy14886 59 RDPAMYQCRAKNQLK--TRYSSAQLRVL 84 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~--~~~~~~~l~v~ 84 (505)
+|+|.|.|.+.+..+ .....+.|.|.
T Consensus 91 ~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 91 SDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp GGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred HHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 999999999986433 23334566654
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=2.3e-06 Score=60.93 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=46.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.|||. |+.+. ..........++... +.+|.|.+++ .+|+|.|.|.+.
T Consensus 13 v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 91 (107)
T d1j1pl_ 13 VTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE-TEDFGMYFCQQA 91 (107)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccC-cCCCEEEEEEcC
Confidence 47899999999986544567999993 22111 000011133455542 2489999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
+
T Consensus 92 ~ 92 (107)
T d1j1pl_ 92 N 92 (107)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.17 E-value=2.7e-06 Score=61.50 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.........+.|||. ++.+. ..........++... ...|.|.+++ .+|+|.|.|.
T Consensus 13 v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsg~YyCa 91 (115)
T d1lp9e1 13 LTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQ-LSDSALYYCA 91 (115)
T ss_dssp EETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCC-GGGCEEEEEE
T ss_pred ECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccc-cccCccceEE
Confidence 46899999999997656678999993 22111 111111123344442 2469999999 9999999998
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+..
T Consensus 92 ~~~ 94 (115)
T d1lp9e1 92 LFL 94 (115)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.16 E-value=2e-06 Score=62.23 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=46.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc-----CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN-----SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~-----~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.........+.||+.. .... ..........++... ..+|.|.+++ .+|+|.|.|.
T Consensus 12 ~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~-~~Dsg~Y~Ca 90 (114)
T d2cdea1 12 ILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQ-LSDSASYICV 90 (114)
T ss_dssp EETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCC-GGGCSEEEEE
T ss_pred EeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccC-hhhCccccee
Confidence 468999999999876566789999831 1110 001111122344331 2479999999 9999999999
Q ss_pred EEcc
Q psy14886 68 AKNQ 71 (505)
Q Consensus 68 ~~~~ 71 (505)
+...
T Consensus 91 ~~~~ 94 (114)
T d2cdea1 91 VSDR 94 (114)
T ss_dssp EECS
T ss_pred eecC
Confidence 8753
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.3e-06 Score=59.25 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=45.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
|..|++|+|.|... .+...+.|+|+|.......... .. ......+.|.+++ ..|+|.|+|...+..
T Consensus 15 V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~-~~---~~~~a~F~i~~v~-~~~~G~Y~C~y~~~~ 80 (95)
T d1olla1 15 VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKP-PE---RINKVKFYIPDMN-SRMAGQYSCIYRVGE 80 (95)
T ss_dssp EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSS-CT---TCCEEEEEESSCC-GGGCEEEEEEEEETT
T ss_pred ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEcc-CC---CccEEEEEEeeee-cCCCceEEEEeCCCC
Confidence 45799999999974 3568899999986432110000 00 0112468999999 999999999987543
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=1.6e-06 Score=60.89 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|..|++|+|.|... .+...+.|+|++........ ............+.|.+++ ..|+|.|+|...+...
T Consensus 18 V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~--~~~~~~~~~~a~F~l~~vt-~~~~G~Y~C~y~~~~~ 86 (99)
T d1ucta1 18 IPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIG--RRLKFWNETDPEFVIDHMD-ANKAGRYQCQYRIGHY 86 (99)
T ss_dssp EETTCCEEEEECCC-TTCSEEEEEEEETTEEEECS--EECC----CCCEEEECSCC-GGGCEEEEEEEEETTT
T ss_pred eeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecc--ccccCCCCceEEEEecCCC-HHHCceEEEEEECCCc
Confidence 46799999999875 46788999997642110000 0001111234578999999 9999999999887554
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.15 E-value=2.1e-06 Score=60.75 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEEC-----cCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELL-----NSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l-----~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.|||. |+.+ ...........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 13 ~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~Dsa~YyCa~~ 91 (107)
T d1c5cl1 13 ASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLE-SEDFADYYCLQY 91 (107)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCSEEEEEEC
T ss_pred ECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhc-ccCCeEEEEecC
Confidence 46899999999987655667999992 2211 0111111223344332 2489999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (107)
T d1c5cl1 92 A 92 (107)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.15 E-value=3.3e-06 Score=59.90 Aligned_cols=68 Identities=26% Similarity=0.438 Sum_probs=46.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CE---ECc-CC-CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GE---LLN-SE-TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~---~l~-~~-~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|...+.....+.|||. +. .|. .. ........++... ...|.|.+++ .+|+|.|.|...
T Consensus 12 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 90 (106)
T d1lk3l1 12 VSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVE-ADDTAIYFCQQS 90 (106)
T ss_dssp ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcC-hhhCCCcccccc
Confidence 47899999999997655567999983 21 111 10 1111234566543 2489999999 999999999754
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.14 E-value=7.8e-06 Score=57.92 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=47.4
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~ 158 (505)
+..+.+.+|++|+|.|...+.....+.|++ .|.. +. ...++..... ..|.|.++..+|+|.|.
T Consensus 8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (107)
T d1ospl1 8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYF 87 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEE
T ss_pred CCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEE
Confidence 456778999999999987665545799998 2221 10 1223333322 24999999999999999
Q ss_pred EEEEc
Q psy14886 159 CTATN 163 (505)
Q Consensus 159 C~~~~ 163 (505)
|.+..
T Consensus 88 Ca~~~ 92 (107)
T d1ospl1 88 CQQYW 92 (107)
T ss_dssp EEECS
T ss_pred Eeecc
Confidence 98753
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.14 E-value=5.9e-06 Score=58.55 Aligned_cols=69 Identities=28% Similarity=0.407 Sum_probs=44.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEE---Cc--CCCCCCCCCCcEEEE-C---CeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GEL---LN--SETLPLEDQDRYFIQ-D---NVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~---l~--~~~~~~~~~~~~~~~-~---~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+++|++++|.|...+.....+.||+. ++. |. ..........++... + .+|.|.+++ .+|+|.|.|...
T Consensus 13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~-~~Dsa~YyCA~~ 91 (108)
T d1jhll_ 13 ASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLE-PEDFAMYICQQH 91 (108)
T ss_dssp ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCC-TTCCSEEEEEEC
T ss_pred ecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeE-eccceEEEEeeC
Confidence 46899999999987655567999993 211 10 000111122334332 1 379999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (108)
T d1jhll_ 92 N 92 (108)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.13 E-value=2.9e-06 Score=60.42 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+++|++|+|.|.........+.|||. ++... ..........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 13 v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~DSa~YyCa~~ 91 (107)
T d1kcvl1 13 MSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQ-ADDDADYYCGQS 91 (107)
T ss_dssp EETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhhe-ecCCceEEEEec
Confidence 46899999999987655567999983 22110 001111123455442 2479999999 999999999865
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (107)
T d1kcvl1 92 Y 92 (107)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=2.9e-06 Score=61.98 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=45.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--CCEECc---------CC------CCCCCCCCcEEEE---C--CeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--NGELLN---------SE------TLPLEDQDRYFIQ---D--NVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--~~~~l~---------~~------~~~~~~~~~~~~~---~--~~L~i~~~~~~ 58 (505)
+.+|++++|.|.+.+.....+.|+| .|..+. .. ........++... + .+|.|.+++ .
T Consensus 13 ~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~-~ 91 (122)
T d1nezg_ 13 AELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFS-K 91 (122)
T ss_dssp ECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCC-G
T ss_pred ECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccc-c
Confidence 4689999999999876677899998 222211 00 0011122344331 1 369999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|+|.|.|.+.
T Consensus 92 ~Dsg~YyCa~~ 102 (122)
T d1nezg_ 92 ENEGYYFCSVI 102 (122)
T ss_dssp GGCEEEEEEEE
T ss_pred CCCEEEEeeEe
Confidence 99999999875
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.11 E-value=4.5e-06 Score=59.09 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC---CEEC---cC-CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN---GELL---NS-ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~---~~~l---~~-~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.||+. ..+. .. .........++... ..+|.|.+++ .+|+|.|.|.+.
T Consensus 12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~-~~DsA~YyCa~~ 90 (106)
T d1a0ql1 12 ASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLE-PEDIATYYCLQY 90 (106)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCC-GGGCSEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhc-ccCCEeEEEEEe
Confidence 47899999999986655567999992 1111 00 00011123455442 2479999999 999999999865
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 91 ~ 91 (106)
T d1a0ql1 91 Y 91 (106)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.8e-06 Score=60.61 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEec--cCCCeEEEEEC--CEE---CcC---C--CCCCCCCCcEEEEC------CeEEEEcCCCCCCCe
Q psy14886 1 MDNQADLTWTCEAFG--VPDVTYSWFRN--GEL---LNS---E--TLPLEDQDRYFIQD------NVLTIRYLNPERDPA 62 (505)
Q Consensus 1 v~~G~~~~l~C~~~~--~p~~~~~W~~~--~~~---l~~---~--~~~~~~~~~~~~~~------~~L~i~~~~~~~d~G 62 (505)
|++|++++|.|...+ .....+.|+|. +.. +.. . .......+|+.+.. .+|.|.+++ .+|+|
T Consensus 11 v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~-~~Dsg 89 (113)
T d1smoa_ 11 LKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQ-VEDSG 89 (113)
T ss_dssp CCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCC-GGGCE
T ss_pred EccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCC-cccCc
Confidence 579999999999864 34567899983 211 110 0 11111234665521 369999999 99999
Q ss_pred EEEEEEEc
Q psy14886 63 MYQCRAKN 70 (505)
Q Consensus 63 ~Y~C~~~~ 70 (505)
.|.|.+..
T Consensus 90 ~Y~Cav~~ 97 (113)
T d1smoa_ 90 LYQCVIYQ 97 (113)
T ss_dssp EEEEEECC
T ss_pred eEEEEEEC
Confidence 99998754
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=7.5e-06 Score=58.93 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=46.1
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEEC--CE-E--C---cCCCCCCCCCCcEEEEC------CeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRN--GE-L--L---NSETLPLEDQDRYFIQD------NVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~--~~-~--l---~~~~~~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~ 65 (505)
|.+|++++|.|.+.+. ....+.|||. ++ + | ..........+|+.+.. .+|.|.+++ .+|+|.|.
T Consensus 11 v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~-~~Dsg~Yy 89 (114)
T d3bp5a1 11 VSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR-RNDSGIYL 89 (114)
T ss_dssp EETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC-cCCCeEEE
Confidence 4689999999998653 3567899982 22 1 1 01111112345665521 359999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 90 Ca~~~ 94 (114)
T d3bp5a1 90 CGAIS 94 (114)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98864
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.09 E-value=3.7e-06 Score=59.67 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=46.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEE---Cc--CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GEL---LN--SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~---l~--~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.||+. +.. +. ..........++... ..+|.|.+++ .+|+|.|.|...
T Consensus 13 ~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 91 (107)
T d1d5il1 13 ASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLE-YEDMGIYYCLQY 91 (107)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccC-CcCCEEEEeeec
Confidence 47899999999986655667899983 211 10 001111233456542 2489999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (107)
T d1d5il1 92 D 92 (107)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.09 E-value=4.4e-06 Score=59.16 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=45.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|...+.....+.||+. ++.+. ..........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 12 ~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 90 (106)
T d1op3k1 12 ASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQ-FDDFATYHCQHY 90 (106)
T ss_dssp ECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCC-GGGCSEEEEEEE
T ss_pred ECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEcccc-ccCCCcEeeeeC
Confidence 47899999999986544567999993 22111 001111223455442 2479999999 999999999865
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 91 ~ 91 (106)
T d1op3k1 91 A 91 (106)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=2.4e-06 Score=59.10 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=44.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
|..|++|+|.|.........+.|+|+|..... ..........+.|.+++ .+|+|.|+|....
T Consensus 16 V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~-------~~~~~~~~a~F~l~~v~-~~~~G~Y~C~y~~ 77 (96)
T d1ucta2 16 LMPGENISLTCSSAHIPFDRFSLAKEGELSLP-------QHQSGEHPANFSLGPVD-LNVSGIYRCYGWY 77 (96)
T ss_dssp ECTTCCCEEEEECSSSCCSEEEEEETTCSSCC-------SEEECSSSEEEECCSCC-GGGCEEEEEEEEC
T ss_pred cCCCCeEEEEEeCCCCCceEEEEEECCcccce-------EEcCCCcccEEEEeccc-cccCcEEEEEEEc
Confidence 56899999999864334568999999864331 11111123568899999 9999999998764
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.08 E-value=8.1e-06 Score=57.64 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=46.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEe----c--------CCCcEEEeeC---CCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNII----G--------SGGRRKIFEN---GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~----~--------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.........+.|++ .|+.. . ...+...... ..|.|.+++.+|+|.|.|
T Consensus 9 ~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 88 (107)
T d1c5cl1 9 SSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYC 88 (107)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred CEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEE
Confidence 55678899999999997766566799998 33221 0 1122222221 259999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+.+
T Consensus 89 a~~~ 92 (107)
T d1c5cl1 89 LQYA 92 (107)
T ss_dssp EECS
T ss_pred ecCc
Confidence 7654
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5e-06 Score=57.52 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.1
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEE--EeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
.+..|++|+|.|.... ....+.|+++|.......... ......|.|.+++..|+|.|+|...+...
T Consensus 14 ~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~ 81 (95)
T d1olla1 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (95)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence 4789999999999753 356899999886432110000 00112589999999999999999876544
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.06 E-value=1.2e-05 Score=57.06 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=46.8
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~ 158 (505)
+..+.+.+|++|+|.|.........+.|++. ++. +. ...+.....+ ..|.|.+++.+|+|.|.
T Consensus 8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Yy 87 (107)
T d1kcvl1 8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYY 87 (107)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEE
Confidence 3557789999999999976655557999972 221 10 1223333222 24999999999999999
Q ss_pred EEEEc
Q psy14886 159 CTATN 163 (505)
Q Consensus 159 C~~~~ 163 (505)
|.+..
T Consensus 88 Ca~~~ 92 (107)
T d1kcvl1 88 CGQSY 92 (107)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 98653
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.06 E-value=8.4e-06 Score=57.63 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=46.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEe------------cCCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.........+.|++ .|+.. ....++.....+ +|.|.+++.+|+|.|.|
T Consensus 9 ~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyC 88 (106)
T d1i8ka_ 9 ASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYC 88 (106)
T ss_dssp SEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeE
Confidence 45678999999999987655555799997 23221 012233332222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 89 a~~~ 92 (106)
T d1i8ka_ 89 LQSF 92 (106)
T ss_dssp EECS
T ss_pred ecCc
Confidence 8653
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.05 E-value=1.2e-05 Score=57.04 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=46.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEe------------cCCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNII------------GSGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~------------~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.........+.|++ .|+.. ....++.....+ .|.|.+++.+|+|.|.|
T Consensus 9 ~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyC 88 (107)
T d1j1pl_ 9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC 88 (107)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEE
Confidence 55778999999999997655555799998 22221 012233332222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+.+
T Consensus 89 a~~~ 92 (107)
T d1j1pl_ 89 QQAN 92 (107)
T ss_dssp EECS
T ss_pred EcCC
Confidence 7653
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.05 E-value=6.4e-06 Score=56.96 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=44.1
Q ss_pred CCceEEEEEEeccCCCeEEEEEC--CEE---C-cCCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRN--GEL---L-NSETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~--~~~---l-~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
|++++|.|...+.....+.|||. +.. | ..........+|+... ..+|.|.+++ .+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~-~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQ-PSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCC-GGGCEEEEEEEES
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccc-cCcCccceeeEec
Confidence 89999999987666678999992 211 1 0011111123455442 1479999999 9999999998764
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.05 E-value=3.4e-06 Score=59.54 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=45.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|...+.....+.|||. |..+. ..........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 10 ~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~Dsa~YyCA~~ 88 (103)
T d8faba1 10 VSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQ-AEDEADYYCQAW 88 (103)
T ss_dssp ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCC-GGGCEEEEEEEE
T ss_pred ECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcc-hhHCceEEeeec
Confidence 47899999999986544567899993 22111 011111223344332 2479999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 89 ~ 89 (103)
T d8faba1 89 D 89 (103)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.05 E-value=5e-06 Score=58.94 Aligned_cols=69 Identities=25% Similarity=0.294 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEEC---cC--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELL---NS--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l---~~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.|||. |+.+ .. .........|+... ...|.|.+++ .+|+|.|.|.+.
T Consensus 13 ~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~-~~DsA~YyCa~~ 91 (107)
T d1mexl1 13 TSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQ-SEDLAEYFCQQY 91 (107)
T ss_dssp ECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCSEEEEEEC
T ss_pred ECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhh-eecceeEEEeEC
Confidence 47899999999986554567999982 2211 10 01111123455542 2479999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (107)
T d1mexl1 92 N 92 (107)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=8.8e-06 Score=58.44 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=41.4
Q ss_pred CCCCceEEEEEEeccC---CCe--EEEEECCEECc---------CCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEE
Q psy14886 2 DNQADLTWTCEAFGVP---DVT--YSWFRNGELLN---------SETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p---~~~--~~W~~~~~~l~---------~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~ 65 (505)
..|++++|.|.+...+ ... +.|.+++..+. ..........+... .+.+|.|.+++ .+|+|.|.
T Consensus 7 ~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~-~~D~G~Y~ 85 (110)
T d1ncna_ 7 YFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQ-IKDKGLYQ 85 (110)
T ss_dssp ETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCC-GGGCEEEE
T ss_pred EeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCC-hhHCEEEE
Confidence 3699999999986422 222 34445432110 00111112233333 35689999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 86 C~V~~ 90 (110)
T d1ncna_ 86 CIIHH 90 (110)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99864
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=4.1e-06 Score=59.59 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=47.7
Q ss_pred CCCCceEEEEEEeccC----CCeEEEEECCEECcCCC-----CCCCCCCcEEEE---CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 2 DNQADLTWTCEAFGVP----DVTYSWFRNGELLNSET-----LPLEDQDRYFIQ---DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p----~~~~~W~~~~~~l~~~~-----~~~~~~~~~~~~---~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
..|++++|.|...... ...+.|.+++..+.... ......+|.... +.+|.|.+++ .+|+|.|.|.+.
T Consensus 7 ~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~-~~D~G~Y~C~V~ 85 (105)
T d1dr9a1 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALR-PSDEGTYECVVL 85 (105)
T ss_dssp ETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCC-GGGCEEEEEEEE
T ss_pred EeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCC-hHHCeEEEEEEE
Confidence 4799999999875422 36789999876542110 000112344442 4589999999 999999999997
Q ss_pred cccC
Q psy14886 70 NQLK 73 (505)
Q Consensus 70 ~~~~ 73 (505)
+..+
T Consensus 86 ~~~~ 89 (105)
T d1dr9a1 86 KYEK 89 (105)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 5433
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.02 E-value=8.1e-06 Score=57.86 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.|||. |+.+. ..........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 13 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~DsA~YyCa~~ 91 (107)
T d1tjgl1 13 ASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLR-PEDFATYYCQQL 91 (107)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCSEEEEEEC
T ss_pred ECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccce-eCcCceEEEEEC
Confidence 46899999999987544578999993 22110 000011123455442 2379999999 999999999765
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 92 ~ 92 (107)
T d1tjgl1 92 H 92 (107)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.01 E-value=1.8e-05 Score=55.94 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=46.4
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~ 158 (505)
+..+.+.+|++++|.|.........+.|++ .|+. +. ...++..... ..|.|.+++.+|++.|.
T Consensus 8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Yy 87 (107)
T d1mexl1 8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYF 87 (107)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEE
Confidence 355778999999999986555445799997 2221 11 1223333222 24999999999999999
Q ss_pred EEEEc
Q psy14886 159 CTATN 163 (505)
Q Consensus 159 C~~~~ 163 (505)
|.+..
T Consensus 88 Ca~~~ 92 (107)
T d1mexl1 88 CQQYN 92 (107)
T ss_dssp EEECS
T ss_pred EeECC
Confidence 97653
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.01 E-value=7.1e-06 Score=58.61 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=44.9
Q ss_pred CCCCCceEEEEEEec--cCCCeEEEEEC--CEECcCCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFG--VPDVTYSWFRN--GELLNSETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~--~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
+++|+.++|.|...+ .....+.|||. |+... ......+++... ..+|.|.+++ .+|+|.|.|.+..
T Consensus 11 ~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~---~~~~~~gr~~~~~~~~~~~~~L~I~~l~-~~Dsa~YyCA~~~ 86 (112)
T d1sq2n_ 11 KETGESLTINCVLRDASYALGSTCWYRKKSGEGNE---ESISKGGRYVETVNSGSKSFSLRINDLT-VEDGGTYRCGLGV 86 (112)
T ss_dssp ECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCC---EECCCBTTEEEEEETTTTEEEEEECSCC-GGGCEEEEEEECB
T ss_pred EcCCCCEEEEEEECCCcccCCceEEEEeeccceee---eeeccCCcEeeEEecCCceeeeEecCCc-CccCEEEeEEEec
Confidence 368999999999864 24578999992 21111 011134455432 1379999999 9999999998764
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=5.1e-05 Score=54.39 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=47.7
Q ss_pred ceEEeeCCCeEEEEeecCCC-CCCeEEEEE--CCE-E--e----------cCCCcEEEeeCC-----CEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-PKPKFVWKK--DGN-I--I----------GSGGRRKIFENG-----NLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~--~g~-~--~----------~~~~~~~~~~~~-----~l~i~~v~~~d~G 155 (505)
..+.+.+|++++|.|...+. ....+.|++ .|+ + + ....++.+.... .|.|.+++.+|+|
T Consensus 7 ~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg 86 (114)
T d3bp5a1 7 AWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSG 86 (114)
T ss_dssp SEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred CeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCe
Confidence 55778999999999987544 345789997 222 1 1 112344443221 3999999999999
Q ss_pred EEEEEEEcCC
Q psy14886 156 IYSCTATNVH 165 (505)
Q Consensus 156 ~y~C~~~~~~ 165 (505)
.|.|.+....
T Consensus 87 ~YyCa~~~~~ 96 (114)
T d3bp5a1 87 IYLCGAISLH 96 (114)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEEeCC
Confidence 9999887543
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.7e-05 Score=57.48 Aligned_cols=83 Identities=25% Similarity=0.308 Sum_probs=52.4
Q ss_pred ceEEeeCCCeEEEEeecCCCC---CCeEEEEECC--EE---e-c--------CCCcEEEeeC-----CCEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP---KPKFVWKKDG--NI---I-G--------SGGRRKIFEN-----GNLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p---~~~i~W~~~g--~~---~-~--------~~~~~~~~~~-----~~l~i~~v~~~d~ 154 (505)
..+.+.+|++|+|.|...... ...+.|++.. .. + . ...+..+..+ .+|.|.+++.+|+
T Consensus 7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~Ds 86 (116)
T d1xeda_ 7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDS 86 (116)
T ss_dssp SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCC
Confidence 557788999999999865432 2367898732 11 1 0 1223333222 1499999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeC
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHG 179 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~ 179 (505)
|.|.|.+..........+.|.|...
T Consensus 87 G~Y~C~v~~~~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 87 GRYKCGLGINSRGLSFDVSLEVLEH 111 (116)
T ss_dssp EEEEEEESCGGGCCEEEEEEEEECC
T ss_pred EEEEEEEEcCCCCceEeEEEEEECC
Confidence 9999998654433344466666543
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.99 E-value=1.9e-05 Score=56.27 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=46.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CE---Eec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GN---IIG---------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~---~~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|...+.....+.|++. |+ .+. ...++....++ .|.|.+++.+|+|.|.|
T Consensus 11 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyC 90 (109)
T d1bwwa_ 11 SSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYC 90 (109)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEE
Confidence 557789999999999987655557899982 21 111 12233332222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 91 A~~~ 94 (109)
T d1bwwa_ 91 QQYQ 94 (109)
T ss_dssp EECS
T ss_pred eecC
Confidence 8753
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=1.5e-05 Score=58.20 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=49.8
Q ss_pred ceEEeeCCCeEEEEeecCC----CCCCeEEEEE--CCE----Ee---------c-C----CCcEEEee-----CCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEA----APKPKFVWKK--DGN----II---------G-S----GGRRKIFE-----NGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~----~p~~~i~W~~--~g~----~~---------~-~----~~~~~~~~-----~~~l~i~ 147 (505)
..+.+..|++++|.|.... .....+.|++ ++. .+ . . .+|..+.. +.+|.|.
T Consensus 7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (119)
T d1neua_ 7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH 86 (119)
T ss_dssp SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEEC
Confidence 4567889999999998532 2234899986 221 11 0 0 12333321 2369999
Q ss_pred CCCCCCCEEEEEEEEcCCCce--eeeEEEEEE
Q psy14886 148 PVSRDDSGIYSCTATNVHGMD--ESKGRLIVL 177 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~--~~~~~l~v~ 177 (505)
+++..|+|.|.|.+.+..+.. ...+.|.|.
T Consensus 87 ~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 87 NLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp SCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred CCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 999999999999998754322 333555553
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.99 E-value=1.3e-05 Score=56.62 Aligned_cols=67 Identities=27% Similarity=0.374 Sum_probs=46.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CE-E-e--c--------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GN-I-I--G--------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~-~-~--~--------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++|+|.|.........+.|++. |. + + . ...+.....++ .|.|.++..+|+|.|.|
T Consensus 8 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyC 87 (106)
T d1a0ql1 8 SSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYC 87 (106)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred CEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEE
Confidence 556789999999999876555557999982 22 1 1 0 11233333222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 88 a~~~ 91 (106)
T d1a0ql1 88 LQYY 91 (106)
T ss_dssp EECS
T ss_pred EEeC
Confidence 8753
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=8.4e-06 Score=59.71 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=45.0
Q ss_pred CCCCCceEEEEEEecc-------CCCeEEEEECCEECcCC----------CCCCCCCCcEEEE------CCeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAFGV-------PDVTYSWFRNGELLNSE----------TLPLEDQDRYFIQ------DNVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-------p~~~~~W~~~~~~l~~~----------~~~~~~~~~~~~~------~~~L~i~~~~~ 57 (505)
|.+|++|+|.|.++.. ....+.|++....-... .......+|+.+. +.+|.|.+++
T Consensus 13 v~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~- 91 (121)
T d2g5ra1 13 VQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDAR- 91 (121)
T ss_dssp ECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSCC-
T ss_pred EccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCCC-
Confidence 4689999999998521 12568899853321110 1111224566653 3479999999
Q ss_pred CCCCeEEEEEEEc
Q psy14886 58 ERDPAMYQCRAKN 70 (505)
Q Consensus 58 ~~d~G~Y~C~~~~ 70 (505)
.+|+|.|.|.+..
T Consensus 92 ~~DsG~Y~C~v~~ 104 (121)
T d2g5ra1 92 MSDAGRYFFRMEK 104 (121)
T ss_dssp GGGCEEEEEEEEE
T ss_pred hHHCEEEEEEEEe
Confidence 9999999999864
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=1.8e-05 Score=54.51 Aligned_cols=69 Identities=20% Similarity=0.360 Sum_probs=45.5
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCC--C-CCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPL--E-DQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~--~-~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
..|+.++|.|.+.| +|.+.|+|++||+.+....... . ..+.|.+ .+.|.+. ..+...|+|.+.+.....
T Consensus 14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v-~S~L~v~----~~~~~~~tC~V~h~~l~~ 86 (95)
T d1dr9a2 14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAV-SSKLDFN----MTTNHSFMCLIKYGHLRV 86 (95)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEE-EEEEEEE----TTSCEEEEEEEEETTCCE
T ss_pred CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEE-EEEEEcc----CCccceEEEEEEecCCCC
Confidence 35778899999987 7988999999998886431111 1 1222322 2456664 335578999998765443
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.98 E-value=7.6e-06 Score=59.72 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=45.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE------ec---C-C------------CcEEEe-eCC---CEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI------IG---S-G------------GRRKIF-ENG---NLLISP 148 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~------~~---~-~------------~~~~~~-~~~---~l~i~~ 148 (505)
..+.+.+|++++|.|.+.+.....+.|++ .|+. +. . . .++... ..+ .|.|.+
T Consensus 9 ~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~ 88 (122)
T d1nezg_ 9 KKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNK 88 (122)
T ss_dssp SCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESS
T ss_pred CEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcc
Confidence 45678999999999998766666899987 2221 10 0 0 111111 111 499999
Q ss_pred CCCCCCEEEEEEEE
Q psy14886 149 VSRDDSGIYSCTAT 162 (505)
Q Consensus 149 v~~~d~G~y~C~~~ 162 (505)
++.+|+|.|.|.+.
T Consensus 89 ~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 89 FSKENEGYYFCSVI 102 (122)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cccCCCEEEEeeEe
Confidence 99999999999875
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=2e-05 Score=55.86 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=49.0
Q ss_pred EEeeCCCeEEEEeecCCCC----CCeEEEEECCEEecC------------CCcEEEeeC--CCEEEcCCCCCCCEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAP----KPKFVWKKDGNIIGS------------GGRRKIFEN--GNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p----~~~i~W~~~g~~~~~------------~~~~~~~~~--~~l~i~~v~~~d~G~y~C~ 160 (505)
+....|++++|.|...... ...+.|.+++..+.. ..+...... .+|.|.+++.+|+|.|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~ 83 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence 5678899999999875432 237889888766421 123333222 3699999999999999999
Q ss_pred EEcCCCce
Q psy14886 161 ATNVHGMD 168 (505)
Q Consensus 161 ~~~~~g~~ 168 (505)
+.+..+..
T Consensus 84 V~~~~~~~ 91 (105)
T d1dr9a1 84 VLKYEKDA 91 (105)
T ss_dssp EEECCTTS
T ss_pred EEeCCCCC
Confidence 98654433
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=6e-06 Score=59.51 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECC--EE---C---cC-C----CCCCCCCCcEEEE----CCeEEEEcCCCCCCCe
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNG--EL---L---NS-E----TLPLEDQDRYFIQ----DNVLTIRYLNPERDPA 62 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~--~~---l---~~-~----~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G 62 (505)
+++|++|+|.|.+.+. ....+.|+|.. .. + .. . ........|+... ..+|.|.+++ .+|+|
T Consensus 12 ~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~-~~Dsg 90 (114)
T d1akjd_ 12 WNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFR-RENEG 90 (114)
T ss_dssp CCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCC-GGGCE
T ss_pred ccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCC-CCCCE
Confidence 4789999999998653 34569999921 11 1 00 0 1111234566542 2379999999 99999
Q ss_pred EEEEEEEc
Q psy14886 63 MYQCRAKN 70 (505)
Q Consensus 63 ~Y~C~~~~ 70 (505)
.|.|.+..
T Consensus 91 ~YyCa~~~ 98 (114)
T d1akjd_ 91 YYFCSALS 98 (114)
T ss_dssp EEEEEEEE
T ss_pred EEeEeEcC
Confidence 99999763
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.98 E-value=1e-05 Score=58.03 Aligned_cols=65 Identities=23% Similarity=0.358 Sum_probs=44.4
Q ss_pred CCCCceEEEEEEec--cCCCeEEEEEC--CEECcCCCCCCCCCCcEEEE--C----CeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 2 DNQADLTWTCEAFG--VPDVTYSWFRN--GELLNSETLPLEDQDRYFIQ--D----NVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 2 ~~G~~~~l~C~~~~--~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~--~----~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.+|++++|.|.+++ .+...+.|||. +.... ......+++... . .+|.|.+++ .+|+|.|.|.+..
T Consensus 13 ~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 13 ETGESLTINCVLRDASFELKDTGWYRTKLGSTNE---QSISIGGRYVETVNKGSKSFSLRISDLR-VEDSGTYKCQAFY 87 (113)
T ss_dssp CTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCC---EECCCBTTEEEEEETTTTEEEEEECSCC-GGGCEEEEEEEEE
T ss_pred cCCCCEEEEEEECCCcccCCccceeeeeccccce---eeeeecccccceeECCCCceeeeecccc-cCCcceEeeeeec
Confidence 68999999999975 34567999982 22111 001133444432 1 379999999 9999999998853
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.8e-05 Score=55.38 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCCCceEEEEEEecc-C-CCeEEEEECC--EE---C-c-CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEE
Q psy14886 2 DNQADLTWTCEAFGV-P-DVTYSWFRNG--EL---L-N-SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p-~~~~~W~~~~--~~---l-~-~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C 66 (505)
.+|++++|.|..... . ...+.|+|.. .. | . .........+|+.+. ..+|.|.+++ .+|+|.|.|
T Consensus 9 ~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~-~~DsG~Y~C 87 (108)
T d1hkfa_ 9 VAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLR-EEDSGHYWC 87 (108)
T ss_dssp CTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCC-GGGCEEEEE
T ss_pred cCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhC-CCCCEEEEE
Confidence 589999999997542 2 3467899832 11 1 0 111111233455442 1379999999 999999999
Q ss_pred EEEcc
Q psy14886 67 RAKNQ 71 (505)
Q Consensus 67 ~~~~~ 71 (505)
.+...
T Consensus 88 ~v~~~ 92 (108)
T d1hkfa_ 88 RIYRP 92 (108)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 98743
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.97 E-value=7.8e-06 Score=58.06 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEEeccC---CCeEEEEE---CCEECc---CC-CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP---DVTYSWFR---NGELLN---SE-TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p---~~~~~W~~---~~~~l~---~~-~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C 66 (505)
|.+|++++|.|..++.. ...+.||+ +..+.- .. ........|+... ...|.|.+++ .+|+|.|.|
T Consensus 12 vs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~-~~Dsa~YyC 90 (110)
T d1oaql_ 12 TSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQ-TEDEAIYFC 90 (110)
T ss_dssp ECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCC-GGGCEEEEE
T ss_pred eCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCC-ccccEeEEE
Confidence 47899999999996432 24489999 222210 00 1111234566542 3579999999 999999999
Q ss_pred EEEc
Q psy14886 67 RAKN 70 (505)
Q Consensus 67 ~~~~ 70 (505)
....
T Consensus 91 a~~~ 94 (110)
T d1oaql_ 91 ALWY 94 (110)
T ss_dssp EEEE
T ss_pred Eccc
Confidence 8764
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.96 E-value=1.2e-05 Score=58.28 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=47.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--CCEECc------C-CC---CCCCCCCcEEEEC-----CeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--NGELLN------S-ET---LPLEDQDRYFIQD-----NVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--~~~~l~------~-~~---~~~~~~~~~~~~~-----~~L~i~~~~~~~d~G~ 63 (505)
+++|++++|.|...+.....+.||| .|+.+. . .. .......++.... ..|.|.+++ .+|+|.
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~-~~Dsa~ 91 (118)
T d2ij0c1 13 VKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAH-PEDSGF 91 (118)
T ss_dssp ECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCC-GGGCEE
T ss_pred EcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccc-cccCce
Confidence 4789999999998765567899999 222111 0 00 1112345665531 369999999 999999
Q ss_pred EEEEEEc
Q psy14886 64 YQCRAKN 70 (505)
Q Consensus 64 Y~C~~~~ 70 (505)
|.|.+..
T Consensus 92 YyCa~~~ 98 (118)
T d2ij0c1 92 YVCSALA 98 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9998764
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=8.6e-06 Score=56.18 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=45.5
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.|..|++|+|.|.........+.|+|+|...... .... ....+.|.+++..|+|.|+|.....
T Consensus 15 ~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~ 78 (96)
T d1ucta2 15 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQSGEHPANFSLGPVDLNVSGIYRCYGWYN 78 (96)
T ss_dssp EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence 5899999999998643344578999998643221 1111 1235899999999999999988754
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.96 E-value=3.1e-05 Score=54.71 Aligned_cols=67 Identities=25% Similarity=0.400 Sum_probs=46.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---e-c--------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I-G--------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~-~--------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.........+.|++ .++. + . ...+.....++ .|.|.+++.+|+|.|.|
T Consensus 9 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyC 88 (108)
T d1jhll_ 9 SYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYIC 88 (108)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEE
T ss_pred CeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEE
Confidence 45678899999999998765555799987 2221 1 0 01222222222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+.+
T Consensus 89 A~~~ 92 (108)
T d1jhll_ 89 QQHN 92 (108)
T ss_dssp EECS
T ss_pred eeCC
Confidence 7654
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.95 E-value=2.1e-05 Score=55.38 Aligned_cols=67 Identities=24% Similarity=0.298 Sum_probs=45.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEe---c---------CCCcEEEeeC---CCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNII---G---------SGGRRKIFEN---GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~---~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C 159 (505)
+.+.+.+|++|+|.|.........+.|++ .|... . ...+.....+ ..|.|.+++.+|+|.|.|
T Consensus 6 ~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC 85 (103)
T d8faba1 6 PSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC 85 (103)
T ss_dssp SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence 35778999999999997665555789998 22211 0 0112222222 249999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 86 A~~~ 89 (103)
T d8faba1 86 QAWD 89 (103)
T ss_dssp EEEE
T ss_pred eecC
Confidence 7654
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.95 E-value=1.2e-05 Score=56.95 Aligned_cols=69 Identities=19% Similarity=0.312 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.|||. ++.+. ..........++... ..+|.|.+++ .+|+|.|.|.+.
T Consensus 12 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~DsavYyCA~~ 90 (109)
T d1w72l1 12 VAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVE-AGDEADYYCQVW 90 (109)
T ss_dssp ECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEE
T ss_pred ECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeec-cCCCEEEEEEec
Confidence 46899999999976544567999983 22111 111111223444432 2479999999 999999999876
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 91 ~ 91 (109)
T d1w72l1 91 D 91 (109)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.95 E-value=1.4e-05 Score=56.99 Aligned_cols=69 Identities=26% Similarity=0.362 Sum_probs=46.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CE---ECc--CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GE---LLN--SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~---~l~--~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|...+.....+.||+. ++ .|. ..........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 15 ~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~-~~Dsa~YyCA~~ 93 (109)
T d1bwwa_ 15 ASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQ-PEDIATYYCQQY 93 (109)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeece-eCcCceEEEeec
Confidence 46899999999997654567899992 11 111 011111233455542 2379999999 999999999865
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 94 ~ 94 (109)
T d1bwwa_ 94 Q 94 (109)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.94 E-value=3.5e-05 Score=54.36 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=46.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CE---Eec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GN---IIG---------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~---~~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.........+.|++. |+ .+. ...++....++ .|.|.+++.+|+|.|.|
T Consensus 8 ~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC 87 (106)
T d1op3k1 8 STLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHC 87 (106)
T ss_dssp SEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEee
Confidence 557789999999999876655557999982 22 110 11233333222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 88 a~~~ 91 (106)
T d1op3k1 88 QHYA 91 (106)
T ss_dssp EEEC
T ss_pred eeCC
Confidence 8764
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.94 E-value=8.8e-06 Score=58.84 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=44.7
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEEC-----CEECc------CCC----CCCCCCCcEEE------ECCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRN-----GELLN------SET----LPLEDQDRYFI------QDNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~-----~~~l~------~~~----~~~~~~~~~~~------~~~~L~i~~~~~~ 58 (505)
+++|++++|.|.+.+. ....+.|+|. .+.+. ... .+.....++.. ...+|.|.+++ .
T Consensus 10 v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~-~ 88 (115)
T d2atpb1 10 VQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVK-P 88 (115)
T ss_dssp ECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCC-G
T ss_pred EcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccC-C
Confidence 4799999999999763 3567999983 22210 000 00112333332 13479999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|+|.|.|.+.
T Consensus 89 ~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 89 EDSDFYFCATV 99 (115)
T ss_dssp GGCEEEEEEEE
T ss_pred CCCcEEEEeEc
Confidence 99999999875
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.93 E-value=1.9e-05 Score=56.50 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=45.4
Q ss_pred CCCCCceEEEEEEecc---CCCeEEEEEC--CEEC---c--CCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGV---PDVTYSWFRN--GELL---N--SETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~---p~~~~~W~~~--~~~l---~--~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|...+. ....+.|||. ++.+ . ..........++.. ....|.|.+++ .+|+|.|.|
T Consensus 12 ~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~-~~Dsa~YyC 90 (112)
T d1lgva1 12 GSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQ-AEDEADYYC 90 (112)
T ss_dssp ECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCC-GGGCEEEEE
T ss_pred ECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCc-cccCEEEEE
Confidence 4689999999998653 2356999992 2211 0 11111123334433 23479999999 999999999
Q ss_pred EEEcc
Q psy14886 67 RAKNQ 71 (505)
Q Consensus 67 ~~~~~ 71 (505)
.+...
T Consensus 91 a~~~~ 95 (112)
T d1lgva1 91 SSYDG 95 (112)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 87643
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.93 E-value=1.1e-05 Score=57.66 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
|.+|++++|.|..++. ....+.|||. ++.+. ..........++... ..+|.|.+++ .+|+|.|.|.+
T Consensus 10 v~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~ 88 (110)
T d2esvd1 10 CAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHAT-LRDTAVYYCIV 88 (110)
T ss_dssp EETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCC-GGGCEEEEEEE
T ss_pred ECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccc-cCCceEEEEEE
Confidence 4689999999998653 3456899992 22111 001111122233332 2479999999 99999999987
Q ss_pred Ec
Q psy14886 69 KN 70 (505)
Q Consensus 69 ~~ 70 (505)
..
T Consensus 89 ~~ 90 (110)
T d2esvd1 89 VR 90 (110)
T ss_dssp EE
T ss_pred eC
Confidence 63
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=97.93 E-value=1.6e-05 Score=55.15 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.| +| ...|+|++||+++..... .. ..++.|.. .+.|.+. .++.+.|+|.+.+..
T Consensus 15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~-~s~l~v~----~~~~~~ytC~V~H~s 86 (100)
T d1muja1 15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHK-LSYLTFI----PSDDDIYDCKVEHWG 86 (100)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEE-EEEEEEC----CCTTCCEEEEEECTT
T ss_pred ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEE-EEEeEEc----CCCCCEEEEEEEECC
Confidence 56889999999998 45 589999999988864311 11 11222322 2345443 445668999999754
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.93 E-value=1e-05 Score=57.52 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEEC--CE---ECc--CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRN--GE---LLN--SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~--~~---~l~--~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.+|++++|.|..... ....+.|||. +. .|- ..........++... ...|.|.+++ .+|+|.|.|.+
T Consensus 13 v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~-~~Dsa~YyCa~ 91 (108)
T d2fx7l1 13 LSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLE-PEDFAVYYCQQ 91 (108)
T ss_dssp ECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCC-GGGCSEEEEEE
T ss_pred ECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHhe-ecccEEEeeec
Confidence 4789999999998643 3456899993 22 111 111111233455442 2469999999 99999999986
Q ss_pred E
Q psy14886 69 K 69 (505)
Q Consensus 69 ~ 69 (505)
.
T Consensus 92 ~ 92 (108)
T d2fx7l1 92 Y 92 (108)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.92 E-value=4.1e-05 Score=54.07 Aligned_cols=65 Identities=26% Similarity=0.499 Sum_probs=45.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC--CE---Eec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GN---IIG---------SGGRRKIFENG---NLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~---~~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+.+|++++|.|...+.....+.|++. |. .+. ...++....++ .|.|.+++.+|+|.|.|.
T Consensus 9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa 88 (106)
T d1lk3l1 9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ 88 (106)
T ss_dssp EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence 46789999999999987655567999972 21 111 12233333222 499999999999999996
Q ss_pred EE
Q psy14886 161 AT 162 (505)
Q Consensus 161 ~~ 162 (505)
+.
T Consensus 89 ~~ 90 (106)
T d1lk3l1 89 QS 90 (106)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.91 E-value=5.2e-06 Score=58.90 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=44.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc----C-CCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN----S-ETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~----~-~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.||+. |+.+. . .........++.. ...+|.|.+++ .+|+|.|.|.+.
T Consensus 13 ~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 91 (107)
T d3cx5k1 13 ASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLE-PEDIATYFCQHH 91 (107)
T ss_dssp BCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCC-SCCCSEEEEEEC
T ss_pred ECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEee-ecCCCcEEeeeC
Confidence 47899999999987655667999982 22110 0 0001112223322 12489999999 999999999764
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.91 E-value=1.9e-05 Score=56.47 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=46.1
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|.+|++++|.|..++. ....+.||+. +..+. ..........|+... ..+|.|.+++ .+|+|.|.|.
T Consensus 12 v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~-~~Dsa~YyCA 90 (111)
T d1rzfl1 12 AAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQ-TGDEADYYCG 90 (111)
T ss_dssp ECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCC-GGGCSEEEEE
T ss_pred eCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeec-cccCcceEEe
Confidence 4789999999998643 2456999983 21110 111122234455542 2589999999 9999999998
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+..
T Consensus 91 ~~~ 93 (111)
T d1rzfl1 91 TWD 93 (111)
T ss_dssp EEE
T ss_pred ecC
Confidence 763
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=97.91 E-value=4e-05 Score=54.15 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=46.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++|+|.|.........+.|++ .|+. +. ...+.....++ .|.|.+++.+|+|.|.|
T Consensus 9 ~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyC 88 (107)
T d1tjgl1 9 SSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYC 88 (107)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred CEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEE
Confidence 55778999999999998765556899988 2221 10 11233332222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 89 a~~~ 92 (107)
T d1tjgl1 89 QQLH 92 (107)
T ss_dssp EECS
T ss_pred EECc
Confidence 7653
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.91 E-value=2.5e-05 Score=56.20 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=48.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEE---e-c---C-----CCcEEEeeC-----CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I-G---S-----GGRRKIFEN-----GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~---~-~---~-----~~~~~~~~~-----~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|.........+.|++. +.. + . . ..++....+ .+|.|.+++.+|+|.|
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y 87 (114)
T d2cdea1 8 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASY 87 (114)
T ss_dssp SEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEE
T ss_pred CEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCccc
Confidence 457789999999999987666668999972 211 1 0 0 112222211 1499999999999999
Q ss_pred EEEEEcCC
Q psy14886 158 SCTATNVH 165 (505)
Q Consensus 158 ~C~~~~~~ 165 (505)
.|.+....
T Consensus 88 ~Ca~~~~~ 95 (114)
T d2cdea1 88 ICVVSDRG 95 (114)
T ss_dssp EEEEECSC
T ss_pred ceeeecCC
Confidence 99998653
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.91 E-value=2.3e-05 Score=55.94 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=44.4
Q ss_pred CCCCCceEEEEEEecc----CCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGV----PDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~----p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++++|.|..... ....+.||+. |+.+. ..........++... ..+|.|.+++ .+|+|.|.
T Consensus 13 v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~Yy 91 (111)
T d1j05a_ 13 VSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE-ADDVATYY 91 (111)
T ss_dssp CCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccc-cccCccEE
Confidence 5789999999987431 2345999993 32111 001111123345442 2479999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 92 Ca~~~ 96 (111)
T d1j05a_ 92 CQQTN 96 (111)
T ss_dssp EEECS
T ss_pred EeecC
Confidence 98654
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.91 E-value=2.9e-05 Score=55.64 Aligned_cols=68 Identities=22% Similarity=0.467 Sum_probs=44.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc------CC---CCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN------SE---TLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~------~~---~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y 64 (505)
+++|++++|.|...+ ....+.|||. ++.+. .. .......+++... ..+|.|.+++ .+|+|.|
T Consensus 11 ~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~Y 88 (112)
T d1kgce1 11 AKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ-QEDSAVY 88 (112)
T ss_dssp EETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC-GGGCEEE
T ss_pred ECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC-cCCCEEE
Confidence 368999999998643 4567999992 22110 00 0111233455442 2479999999 9999999
Q ss_pred EEEEEc
Q psy14886 65 QCRAKN 70 (505)
Q Consensus 65 ~C~~~~ 70 (505)
.|.+..
T Consensus 89 yCa~~~ 94 (112)
T d1kgce1 89 LCASSL 94 (112)
T ss_dssp EEEEES
T ss_pred EEeeeC
Confidence 998763
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.90 E-value=9.1e-06 Score=58.70 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc------CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN------SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~------~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|.........+.|||. ++.+. ..........++... ...|.|.+++ .+|+|.|.|
T Consensus 12 ~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyC 90 (115)
T d1j8hd1 12 VSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH-MSDAAEYFC 90 (115)
T ss_dssp EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC-GGGCEEEEE
T ss_pred EcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc-ccCCcccee
Confidence 46899999999987655678999992 22111 001001112233321 2369999999 999999999
Q ss_pred EEEcc
Q psy14886 67 RAKNQ 71 (505)
Q Consensus 67 ~~~~~ 71 (505)
.+...
T Consensus 91 a~~~~ 95 (115)
T d1j8hd1 91 AVSES 95 (115)
T ss_dssp EEESS
T ss_pred eecCC
Confidence 98743
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.90 E-value=2.4e-05 Score=55.85 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=46.0
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECC--EE---Cc--CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNG--EL---LN--SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~--~~---l~--~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|.+|++++|.|.+.+. ....+.||+.. .. |. ..........++... ...|.|.+++ .+|++.|.|.
T Consensus 12 v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~DsA~YyCA 90 (114)
T d2rhea_ 12 GTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLE-SEDEADYYCA 90 (114)
T ss_dssp ECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEE
T ss_pred eCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccC-cccCceEEEe
Confidence 4689999999998753 35679999932 11 10 001111233455542 2479999999 9999999998
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
...
T Consensus 91 ~~~ 93 (114)
T d2rhea_ 91 AWN 93 (114)
T ss_dssp EEE
T ss_pred ecC
Confidence 763
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.89 E-value=1.4e-05 Score=57.44 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=45.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEE--E----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFI--Q----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~--~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|...+.....+.|||. ++.+. .........+++.. . ..+|.|.+++ .+|+|.|.|.
T Consensus 12 v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~Dsg~YyCa 90 (113)
T d2bnqd1 12 VPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQ-PGDSATYLCA 90 (113)
T ss_dssp EETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCC-GGGCEEEEEE
T ss_pred EcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCC-CCCCcEEeEe
Confidence 46899999999997655567999992 22110 00000011223322 1 2379999999 9999999999
Q ss_pred EEcc
Q psy14886 68 AKNQ 71 (505)
Q Consensus 68 ~~~~ 71 (505)
+...
T Consensus 91 ~~~~ 94 (113)
T d2bnqd1 91 VRPT 94 (113)
T ss_dssp EEES
T ss_pred EecC
Confidence 8743
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.89 E-value=4.3e-05 Score=54.56 Aligned_cols=68 Identities=16% Similarity=0.442 Sum_probs=44.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc------CC---CCCCCCCCcEEEEC-----CeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN------SE---TLPLEDQDRYFIQD-----NVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~------~~---~~~~~~~~~~~~~~-----~~L~i~~~~~~~d~G~Y 64 (505)
+++|++++|.|...+ ....+.|||. |+.+. .. ...-....++.... .+|.|.+++ .+|+|.|
T Consensus 11 ~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~-~~Dsa~Y 88 (111)
T d2esve1 11 IEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE-LEDSGVY 88 (111)
T ss_dssp EETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC-GGGCEEE
T ss_pred ECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc-cCCCceE
Confidence 468999999998644 3467999983 22110 00 00111345555532 479999999 9999999
Q ss_pred EEEEEc
Q psy14886 65 QCRAKN 70 (505)
Q Consensus 65 ~C~~~~ 70 (505)
.|.+..
T Consensus 89 yCa~~~ 94 (111)
T d2esve1 89 FCASSQ 94 (111)
T ss_dssp EEEEES
T ss_pred EEeeeC
Confidence 998653
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=3.4e-05 Score=53.57 Aligned_cols=66 Identities=18% Similarity=0.378 Sum_probs=42.9
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCC---CCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~---~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.| +| ...|+|.+||+++.... .....++.|.. .+.|.+ . .++.+.|+|.+.+..
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~-~s~l~v---~-~~~~~~ytC~V~H~s 87 (100)
T d1k5nb_ 17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL-LYYTEF---T-PTEKDEYACRVNHVT 87 (100)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEE-EEEEEE---C-CCSSCCEEEEEECTT
T ss_pred cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEE-EEEeEE---C-CCCCCEEEEEEEeCC
Confidence 46889999999998 45 57999999999886321 11111222222 123433 4 556778999998754
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.89 E-value=3.6e-05 Score=54.39 Aligned_cols=67 Identities=28% Similarity=0.408 Sum_probs=46.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++|+|.|.........+.|++. +.. +. ...++..... ..|.|.+++.+|+|.|.|
T Consensus 9 ~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyC 88 (107)
T d1d5il1 9 SSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYC 88 (107)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEe
Confidence 556789999999999876655557899872 221 10 1123333222 259999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
....
T Consensus 89 a~~~ 92 (107)
T d1d5il1 89 LQYD 92 (107)
T ss_dssp EECS
T ss_pred eecc
Confidence 7654
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.88 E-value=8.8e-07 Score=61.54 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECcC-----CCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLNS-----ETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~~-----~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|+||++++|.|...+ ....+.|||. ++.+.. ........+|+... ..+|.|.+++ .+|+|.|.|.
T Consensus 5 V~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyCA 82 (96)
T d1ymmd1 5 IQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASR-AADTASYFCA 82 (96)
T ss_dssp CSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCC-STTCSCCEEE
T ss_pred ECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCC-cccCEEEeEe
Confidence 789999999998754 3467999983 332210 00111123344331 2479999999 9999999998
Q ss_pred EEcccC
Q psy14886 68 AKNQLK 73 (505)
Q Consensus 68 ~~~~~~ 73 (505)
+....+
T Consensus 83 ~~~~~g 88 (96)
T d1ymmd1 83 TDTTSG 88 (96)
T ss_dssp EEETTS
T ss_pred EecCCC
Confidence 865433
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.88 E-value=1.6e-05 Score=57.36 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEE--CCEECc------CCCC--CCCCCCcEEEE----C--CeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFR--NGELLN------SETL--PLEDQDRYFIQ----D--NVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~--~~~~l~------~~~~--~~~~~~~~~~~----~--~~L~i~~~~~~~d~G~ 63 (505)
+.+|++++|.|..++. ....+.|+| .++.+. .... .....+|+... . .+|.|.+++ .+|+|.
T Consensus 12 ~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~-~~Dsg~ 90 (116)
T d1tvda_ 12 VASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVR-TEDSAT 90 (116)
T ss_dssp EETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCC-GGGCEE
T ss_pred EcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcc-cccccc
Confidence 4689999999998653 456799998 222110 0000 00133466542 1 379999999 999999
Q ss_pred EEEEEEcc
Q psy14886 64 YQCRAKNQ 71 (505)
Q Consensus 64 Y~C~~~~~ 71 (505)
|.|.+...
T Consensus 91 YyCa~~~~ 98 (116)
T d1tvda_ 91 YYCAFTLP 98 (116)
T ss_dssp EEEEEECT
T ss_pred ceeeEecC
Confidence 99987643
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=1.4e-05 Score=58.29 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=44.9
Q ss_pred CCCCceEEEEEEecc---C---CCeEEEEECCE----ECc-CC---CCCCCCCCcEEEE------CCeEEEEcCCCCCCC
Q psy14886 2 DNQADLTWTCEAFGV---P---DVTYSWFRNGE----LLN-SE---TLPLEDQDRYFIQ------DNVLTIRYLNPERDP 61 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~---p---~~~~~W~~~~~----~l~-~~---~~~~~~~~~~~~~------~~~L~i~~~~~~~d~ 61 (505)
.+|++|+|.|.+... + ...+.|++... .+. .. .......+|+.+. +.+|.|.+++ .+|+
T Consensus 13 ~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~-~~Ds 91 (118)
T d1qfoa_ 13 LSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLK-PEDS 91 (118)
T ss_dssp ETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCC-GGGC
T ss_pred ecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCC-hhHC
Confidence 589999999998521 1 24567888422 110 00 1111234566553 3479999999 9999
Q ss_pred eEEEEEEEccc
Q psy14886 62 AMYQCRAKNQL 72 (505)
Q Consensus 62 G~Y~C~~~~~~ 72 (505)
|.|.|.+....
T Consensus 92 G~Y~C~v~~~~ 102 (118)
T d1qfoa_ 92 GTYNFRFEISD 102 (118)
T ss_dssp EEEEEEEECC-
T ss_pred EEEEEEEEeCC
Confidence 99999987543
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.88 E-value=9.7e-05 Score=53.10 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=45.3
Q ss_pred ceEEeeCCCeEEEEeecCCC-CCCeEEEEEC-----CEEe------cC-----------CCcEEEee-----CCCEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-PKPKFVWKKD-----GNII------GS-----------GGRRKIFE-----NGNLLISP 148 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~-----g~~~------~~-----------~~~~~~~~-----~~~l~i~~ 148 (505)
..+.+.+|++++|.|...+. ....+.|++. ++.+ .. ..+..... ...|.|.+
T Consensus 6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 85 (115)
T d2atpb1 6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMN 85 (115)
T ss_dssp SEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECS
T ss_pred CcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecc
Confidence 45678999999999998764 3457999873 2221 00 11222221 12499999
Q ss_pred CCCCCCEEEEEEEE
Q psy14886 149 VSRDDSGIYSCTAT 162 (505)
Q Consensus 149 v~~~d~G~y~C~~~ 162 (505)
++.+|+|.|.|.+.
T Consensus 86 ~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 86 VKPEDSDFYFCATV 99 (115)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCCCcEEEEeEc
Confidence 99999999999875
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.88 E-value=9.1e-06 Score=57.62 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CE-E--Cc--CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GE-L--LN--SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~-~--l~--~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.|||. |+ + |- ..........|+... ...|.|.+++ .+|+|.|.|.+.
T Consensus 11 ~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~-~~Dsa~YyCA~~ 89 (108)
T d1nfde1 11 VTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQ-PEDEAAYYCLSS 89 (108)
T ss_dssp EETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCC-GGGCSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCcc-ccCCceEEEEee
Confidence 46899999999885444457899992 22 1 11 011111234466542 2489999999 999999999876
Q ss_pred c
Q psy14886 70 N 70 (505)
Q Consensus 70 ~ 70 (505)
.
T Consensus 90 ~ 90 (108)
T d1nfde1 90 Y 90 (108)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.87 E-value=2.1e-05 Score=56.35 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=43.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECcC-----CCCCCCCCCcEEE--E----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLNS-----ETLPLEDQDRYFI--Q----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~~-----~~~~~~~~~~~~~--~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|...+.....+.|||. |..... .........++.. . ..+|.|.+++ .+|+|.|.|.
T Consensus 11 ~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyCa 89 (110)
T d1u3ha1 11 VWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQ-PGDSATYFCA 89 (110)
T ss_dssp EETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCC-TTSCSEEEEC
T ss_pred EcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCC-CCCceeEeee
Confidence 46899999999987544457999983 221110 0000001112222 1 2379999999 9999999998
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+..
T Consensus 90 ~~~ 92 (110)
T d1u3ha1 90 ASA 92 (110)
T ss_dssp CEE
T ss_pred ecC
Confidence 763
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.87 E-value=1.9e-05 Score=55.83 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=46.6
Q ss_pred CCCCCceEEEEEEec--cCCCeEEEEEC--CE----ECcCC-CCC---CCCCCcEEEEC------CeEEEEcCCCCCCCe
Q psy14886 1 MDNQADLTWTCEAFG--VPDVTYSWFRN--GE----LLNSE-TLP---LEDQDRYFIQD------NVLTIRYLNPERDPA 62 (505)
Q Consensus 1 v~~G~~~~l~C~~~~--~p~~~~~W~~~--~~----~l~~~-~~~---~~~~~~~~~~~------~~L~i~~~~~~~d~G 62 (505)
|+||++++|.|..++ .....+.|+|. ++ .+... ... ...++|+.+.. .+|.|.+++ .+|+|
T Consensus 7 ~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~-~eDsa 85 (110)
T d1u9ka_ 7 LVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQ-VTDSG 85 (110)
T ss_dssp ECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCC-GGGCE
T ss_pred CCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccc-cCCCE
Confidence 579999999999975 34667899993 32 11110 000 01235666632 369999999 99999
Q ss_pred EEEEEEEc
Q psy14886 63 MYQCRAKN 70 (505)
Q Consensus 63 ~Y~C~~~~ 70 (505)
.|.|....
T Consensus 86 ~YyCa~~~ 93 (110)
T d1u9ka_ 86 LYRCVIYH 93 (110)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99998753
|
| >d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Purple acid phosphatase, N-terminal domain family: Purple acid phosphatase, N-terminal domain domain: Purple acid phosphatase, N-terminal domain species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=97.87 E-value=0.00013 Score=51.58 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCCceeeeecc--ccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeec-------CceeeEEEEcCCccce
Q psy14886 388 QAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY-------GNVGIAVVRIPSEFYY 458 (505)
Q Consensus 388 ~~P~~~~~~~~--~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~L~p~ 458 (505)
.+|..+.+... ..+++.|.|.- ....+ .-.|+|....+........... .........|++|.|+
T Consensus 17 ~~P~qvhlt~~~~~~tsm~VsW~T--~~~~~----~~~V~yg~~~~~~~~~a~~~~~~~~~~~~~~~~~h~v~Lt~L~P~ 90 (112)
T d2qfra1 17 NAPQQVHITQGDLVGRAMIISWVT--MDEPG----SSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYN 90 (112)
T ss_dssp TCCEEEEEEECSSSSSCEEEEEEE--SSSCC----CCEEEEEESSSCCCEEEECEEECCBCSSCBCCEEEEEEECSCCTT
T ss_pred CCCccEEEeCcCCCCCEEEEEEEC--CCCCC----CcEEEEEECCCCCCcEEEEEEEEEEecccCCcEEEEEEECCCCCC
Confidence 46888777644 35799999987 32322 3456666655433333222211 1123456789999999
Q ss_pred eeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 459 TEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
+.|.++| |.+.+|++..|+|+|
T Consensus 91 T~Y~YrV------G~~~~S~~~~F~T~P 112 (112)
T d2qfra1 91 TKYYYEV------GLRNTTRRFSFITPP 112 (112)
T ss_dssp CEEEEEE------CCSSSCEEEEEECCC
T ss_pred CEEEEEE------CCCCceeeEEEEcCC
Confidence 9999998 455689999999986
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.86 E-value=1.3e-05 Score=57.89 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--CCEE---Cc---CCCCCCCCCCc--EEE----ECCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--NGEL---LN---SETLPLEDQDR--YFI----QDNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--~~~~---l~---~~~~~~~~~~~--~~~----~~~~L~i~~~~~~~d~G~Y~C 66 (505)
|.+|++++|.|.........+.||| .++. +- ..........+ +.. ...+|.|.+++ .+|+|.|.|
T Consensus 12 v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsg~YyC 90 (115)
T d1i9ea_ 12 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH-WSDSAVYFC 90 (115)
T ss_dssp EETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC-GGGCEEEEE
T ss_pred ECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc-ccccceecc
Confidence 4689999999998765567789998 2221 10 00000001111 111 12479999999 999999999
Q ss_pred EEEc
Q psy14886 67 RAKN 70 (505)
Q Consensus 67 ~~~~ 70 (505)
.+..
T Consensus 91 a~~~ 94 (115)
T d1i9ea_ 91 AVSG 94 (115)
T ss_dssp EEEE
T ss_pred cccC
Confidence 8753
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.86 E-value=8.8e-06 Score=57.82 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=45.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CE---EC-cC-CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GE---LL-NS-ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~---~l-~~-~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.........+.||+. ++ .| .. .........++... ...|.|.+++ .+|+|.|.|.+.
T Consensus 13 ~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~-~~DSa~YyCA~~ 91 (109)
T d1mqkl_ 13 ASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLL-PEDFGSYYCQHH 91 (109)
T ss_dssp ECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEcccc-ccCCeeEEEeee
Confidence 46899999999986544567999992 22 11 10 01111233455442 2479999999 999999999875
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.86 E-value=9.6e-05 Score=52.63 Aligned_cols=66 Identities=26% Similarity=0.409 Sum_probs=45.7
Q ss_pred eEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~ 158 (505)
.+.+.+|++++|.|...+.. ...+.|++. +.. +. ...++....+ ..|.|.++..+|++.|.
T Consensus 9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy 88 (114)
T d2rhea_ 9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY 88 (114)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence 47789999999999876543 457999983 211 10 0123333222 24999999999999999
Q ss_pred EEEEc
Q psy14886 159 CTATN 163 (505)
Q Consensus 159 C~~~~ 163 (505)
|.+..
T Consensus 89 CA~~~ 93 (114)
T d2rhea_ 89 CAAWN 93 (114)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 98864
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.84 E-value=1.1e-05 Score=55.69 Aligned_cols=68 Identities=25% Similarity=0.452 Sum_probs=46.9
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC------CCCCCCCCcEEEEC------CeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE------TLPLEDQDRYFIQD------NVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~------~~~~~~~~~~~~~~------~~L~i~~~~~~ 58 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+ ... ......++|+.+.. ..|.|.+++ .
T Consensus 12 vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~-~ 90 (109)
T d2ck0h1 12 VQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK-T 90 (109)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC-G
T ss_pred ECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC-H
Confidence 58999999999999754 46799999 23211 110 01112356777642 258999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|++.|.|.-.
T Consensus 91 eDTAvYYCAr~ 101 (109)
T d2ck0h1 91 EDTGIYYCVRG 101 (109)
T ss_dssp GGCEEEEEEEE
T ss_pred hHCEEEEEEEc
Confidence 99999999753
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.84 E-value=0.00012 Score=52.10 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=45.1
Q ss_pred ceEEeeCCCeEEEEeecCCC-CCCeEEEEE--CCEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-PKPKFVWKK--DGNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~--~g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~y~ 158 (505)
+.+.+.+|++++|.|..... ....+.|++ .|+. +. ...+.....+ ..|.|.+++.+|+|.|.
T Consensus 6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 85 (110)
T d2esvd1 6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY 85 (110)
T ss_dssp SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence 45788999999999987654 334689998 2321 10 0111111111 13999999999999999
Q ss_pred EEEEcC
Q psy14886 159 CTATNV 164 (505)
Q Consensus 159 C~~~~~ 164 (505)
|.+...
T Consensus 86 Ca~~~~ 91 (110)
T d2esvd1 86 CIVVRS 91 (110)
T ss_dssp EEEEES
T ss_pred EEEeCC
Confidence 988654
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=4.6e-05 Score=54.25 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=54.9
Q ss_pred EEeeccEEEEEEeeecCC-CCeEEEEEeCCEEecCCCCCc-ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc---
Q psy14886 192 IAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNE-LETPNINIDGGLLEITNASFADAGEYECVVKSTVGK--- 266 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~-~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~--- 266 (505)
+..|+.++|.|.+.+..+ ..+.+.|++++..+....... ..........+.|.+.....++...|+|.|.+..+.
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~ 92 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 92 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence 678999999999988543 356889999988775322111 111111222345666655566677999999987654
Q ss_pred ----EEEEEEEEEcCCC
Q psy14886 267 ----ISTKTTVIVEGPP 279 (505)
Q Consensus 267 ----~~~~~~l~v~~~p 279 (505)
......|.|..+|
T Consensus 93 ~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 93 VPTVRQAVKELQVYISP 109 (109)
T ss_dssp SCSEEEEEEECCEECCC
T ss_pred cccccceeEEeEEEeCC
Confidence 2334456665543
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.84 E-value=4.4e-05 Score=54.08 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=46.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCE---Ee-cC--------CCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGN---II-GS--------GGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~---~~-~~--------~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
..+.+.+|++++|.|.........+.|++ .|+ .+ .. ..++....++ .|.|.+++.+|+|.|.|
T Consensus 9 ~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyC 88 (109)
T d1mqkl_ 9 VSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYC 88 (109)
T ss_dssp SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEE
Confidence 55778899999999997655455799998 222 11 10 1223222222 49999999999999999
Q ss_pred EEEc
Q psy14886 160 TATN 163 (505)
Q Consensus 160 ~~~~ 163 (505)
.+..
T Consensus 89 A~~~ 92 (109)
T d1mqkl_ 89 QHHY 92 (109)
T ss_dssp EECS
T ss_pred eeeC
Confidence 8753
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.84 E-value=2.9e-05 Score=55.16 Aligned_cols=68 Identities=29% Similarity=0.428 Sum_probs=46.0
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEEC--CEECcC------CCC---CCCCCCcEEEEC------CeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRN--GELLNS------ETL---PLEDQDRYFIQD------NVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~--~~~l~~------~~~---~~~~~~~~~~~~------~~L~i~~~~~~~ 59 (505)
|++|++++|.|.++|.. ...+.|+|. |+.+.- ... ....++|+.+.. ..|.|.+++ .+
T Consensus 12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~-~e 90 (120)
T d2agjh1 12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD-PV 90 (120)
T ss_dssp CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC-GG
T ss_pred ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee-ec
Confidence 68999999999998743 246889983 332210 000 001246777642 369999999 99
Q ss_pred CCeEEEEEEE
Q psy14886 60 DPAMYQCRAK 69 (505)
Q Consensus 60 d~G~Y~C~~~ 69 (505)
|++.|.|...
T Consensus 91 DsAvYyCAr~ 100 (120)
T d2agjh1 91 DTATYYCART 100 (120)
T ss_dssp GCEEEEEEEE
T ss_pred cceEEeeEec
Confidence 9999999744
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.83 E-value=5.1e-05 Score=52.31 Aligned_cols=67 Identities=19% Similarity=0.385 Sum_probs=43.6
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCC---C-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLP---L-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~---~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.|+.++|.|.+.| +| ...++|++||+.+...... . ..++.|.. .+.|.+ . .++...|+|.+.+...
T Consensus 15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~-~s~L~v---~-~~~~~~ytC~V~H~sl 87 (98)
T d1hdmb1 15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQT-LSHLAL---T-PSYGDTYTCVVEHIGA 87 (98)
T ss_dssp SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEE-EEEEEE---C-CCTTCCEEEEEECTTS
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEE-EEEeEc---C-CCCCCEEEEEEEeCCC
Confidence 45788999999998 45 6999999999988643211 1 11223322 234554 3 4455589999997643
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.83 E-value=2.1e-05 Score=56.03 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=44.5
Q ss_pred CCCCCceEEEEEEecc----CCCeEEEEEC--CEEC----cCC-CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGV----PDVTYSWFRN--GELL----NSE-TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~----p~~~~~W~~~--~~~l----~~~-~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++|+|.|.+++. ....+.||+. ++.. ... ........|+... ...|.|.+++ .+|+|.|.
T Consensus 13 ~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~-~~DsA~Yy 91 (111)
T d2gsia1 13 VSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE-EEDAATYY 91 (111)
T ss_dssp EETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc-ccCCceEE
Confidence 4689999999988531 1345899993 2211 110 1111223456543 2479999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 92 Ca~~~ 96 (111)
T d2gsia1 92 CSHIR 96 (111)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 97653
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.83 E-value=4.2e-05 Score=55.04 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=47.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---e---cCC-------CcEEEee-----CCCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I---GSG-------GRRKIFE-----NGNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~---~~~-------~~~~~~~-----~~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|++++|.|.........+.|++ .|+. + ... .+..... .-.|.|.+++.+|+|.
T Consensus 8 ~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 87 (115)
T d1j8hd1 8 SHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAE 87 (115)
T ss_dssp SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEE
T ss_pred CeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCcc
Confidence 56779999999999997655556899998 2221 1 010 1111111 1149999999999999
Q ss_pred EEEEEEcC
Q psy14886 157 YSCTATNV 164 (505)
Q Consensus 157 y~C~~~~~ 164 (505)
|.|.+...
T Consensus 88 YyCa~~~~ 95 (115)
T d1j8hd1 88 YFCAVSES 95 (115)
T ss_dssp EEEEEESS
T ss_pred ceeeecCC
Confidence 99999764
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=97.82 E-value=4.6e-05 Score=54.06 Aligned_cols=68 Identities=21% Similarity=0.389 Sum_probs=45.6
Q ss_pred CceEEeeCCCeEEEEeecCCC-CCCeEEEEEC--CE---Eec---------CCCcEEEeeCC---CEEEcCCCCCCCEEE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAA-PKPKFVWKKD--GN---IIG---------SGGRRKIFENG---NLLISPVSRDDSGIY 157 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~--g~---~~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y 157 (505)
+..+.+.+|++++|.|..... ....+.|++. |+ .+. ...++.....+ .|.|.+++.+|+|.|
T Consensus 8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~Y 87 (108)
T d2fx7l1 8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVY 87 (108)
T ss_dssp SSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred CCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEE
Confidence 355778999999999986544 2346899982 32 111 11222222222 499999999999999
Q ss_pred EEEEEc
Q psy14886 158 SCTATN 163 (505)
Q Consensus 158 ~C~~~~ 163 (505)
.|.+.+
T Consensus 88 yCa~~~ 93 (108)
T d2fx7l1 88 YCQQYG 93 (108)
T ss_dssp EEEECS
T ss_pred eeecCC
Confidence 998753
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.82 E-value=3.6e-05 Score=54.22 Aligned_cols=68 Identities=25% Similarity=0.461 Sum_probs=46.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCCCC---CCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSETL---PLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ ..... ....++|+.+.. ..|.|.+++ .+|+
T Consensus 11 vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~-~eDt 89 (119)
T d1kxvc_ 11 VPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLK-PDDT 89 (119)
T ss_dssp ECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCC-GGGC
T ss_pred ECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCC-cCCc
Confidence 58999999999998854 566899993 2211 11110 011246777642 159999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
+.|.|...
T Consensus 90 A~YYCAr~ 97 (119)
T d1kxvc_ 90 AMYYCKPS 97 (119)
T ss_dssp EEEEEEEE
T ss_pred ceEeeeec
Confidence 99999764
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.82 E-value=7e-05 Score=53.42 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=44.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEE--E----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFI--Q----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~--~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|...+.....+.||+. |+... ..........++.. . ..+|.|.+++ .+|+|.|.|.
T Consensus 12 ~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyCa 90 (111)
T d1bd2d1 12 VQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQ-PGDSAVYFCA 90 (111)
T ss_dssp EETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCC-GGGCEEEEEE
T ss_pred EcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCc-ccccEEEEee
Confidence 46899999999987655567899992 22111 00000111233332 1 2489999999 9999999998
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+..
T Consensus 91 ~~~ 93 (111)
T d1bd2d1 91 AME 93 (111)
T ss_dssp EES
T ss_pred ccC
Confidence 763
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.82 E-value=5.1e-05 Score=54.55 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=47.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEE---e-c--------CCCcEEEee-----CCCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNI---I-G--------SGGRRKIFE-----NGNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~---~-~--------~~~~~~~~~-----~~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|.........+.|++. |+. + . ...++.... ...|.|.+++.+|+|.|
T Consensus 9 ~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y 88 (115)
T d1lp9e1 9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALY 88 (115)
T ss_dssp SEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEE
T ss_pred CeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccc
Confidence 456789999999999976665668999982 221 1 0 012222221 12499999999999999
Q ss_pred EEEEEcC
Q psy14886 158 SCTATNV 164 (505)
Q Consensus 158 ~C~~~~~ 164 (505)
.|.+...
T Consensus 89 yCa~~~~ 95 (115)
T d1lp9e1 89 YCALFLA 95 (115)
T ss_dssp EEEEEEC
T ss_pred eEEEEcC
Confidence 9988654
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=97.82 E-value=6.5e-05 Score=53.41 Aligned_cols=68 Identities=26% Similarity=0.421 Sum_probs=47.3
Q ss_pred ceEEeeCCCeEEEEeecCCC--CCCeEEEEE--CC----EEecCCCcEEEeeCC-----CEEEcCCCCCCCEEEEEEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAA--PKPKFVWKK--DG----NIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~--~g----~~~~~~~~~~~~~~~-----~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+.+.+|++++|.|...+. ....+.|++ .| ..+..+.++....+. +|.|.+++.+|+|.|.|.+..
T Consensus 7 ~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~ 86 (112)
T d1sq2n_ 7 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV 86 (112)
T ss_dssp SEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred CEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence 45668899999999987543 345899998 22 223333444332211 499999999999999998765
Q ss_pred C
Q psy14886 164 V 164 (505)
Q Consensus 164 ~ 164 (505)
.
T Consensus 87 ~ 87 (112)
T d1sq2n_ 87 A 87 (112)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.82 E-value=3.3e-05 Score=53.96 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=47.4
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------c-CC---CCCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------N-SE---TLPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~-~~---~~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ . .. ......++|+.+.. ..|.|.+++ .+|
T Consensus 12 vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~-~eD 90 (117)
T d1jpth1 12 VQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLR-AED 90 (117)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccC-CCC
Confidence 58999999999999854 567999993 3211 1 11 11112457777642 258999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (117)
T d1jpth1 91 TAVYYCARD 99 (117)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999654
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.81 E-value=3.9e-05 Score=53.72 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=47.5
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCCCC---CCCCCCcEEEE--C----CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSETL---PLEDQDRYFIQ--D----NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~~~---~~~~~~~~~~~--~----~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|.. .-.+.|+| .|+-+ ..... ....++|+.+. + ..|.|.+++ .+|+
T Consensus 12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~-~eDt 90 (116)
T d7fabh1 12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVT-AADT 90 (116)
T ss_dssp ECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGGC
T ss_pred ECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccc-cccc
Confidence 57899999999999854 56799999 33322 11100 11134677663 2 259999999 9999
Q ss_pred eEEEEEEEc
Q psy14886 62 AMYQCRAKN 70 (505)
Q Consensus 62 G~Y~C~~~~ 70 (505)
+.|.|....
T Consensus 91 AvYyCAr~~ 99 (116)
T d7fabh1 91 AVYYCARNL 99 (116)
T ss_dssp EEEEEEEEC
T ss_pred eEEEeeeec
Confidence 999997643
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=3.3e-06 Score=57.93 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=42.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|..|++|+|.|... .+...+.|+|+|..... ..........+.|.+++ ..|+|.|+|...
T Consensus 15 V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~-------~~~~~~~~a~F~i~~v~-~~~~G~Y~C~~~ 74 (93)
T d1olla2 15 VISGEKVTFYCRLD-TATSMFLLLKEGRSSHV-------QRGYGKVQAEFPLGPVT-TAHRGTYRCFGS 74 (93)
T ss_dssp EETTCEEEEEEECS-SSCSEEEEEEESSSCEE-------EEEECSSEEEEEEEECC-GGGCEEEEEECE
T ss_pred ccCCCcEEEEECCC-CCCCEEEEEECCCccce-------eecCCCceeEEEecccC-hhcCceEEEEeE
Confidence 45799999999974 45688999998753321 00000123578999999 999999999754
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.80 E-value=2.8e-05 Score=55.37 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=43.4
Q ss_pred CCCCCceEEEEEEecc-----CCCeEEEEEC--CEECc----C-CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGV-----PDVTYSWFRN--GELLN----S-ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-----p~~~~~W~~~--~~~l~----~-~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|..++. ....+.||+. |+.+. . .........++... ...|.|.+++ .+|+|.|
T Consensus 13 ~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~-~eDsAvY 91 (112)
T d1ncwl1 13 VTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE-AEDLGVY 91 (112)
T ss_dssp EETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEE
T ss_pred ECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc-cCcCEeE
Confidence 4689999999997532 2356999993 22110 0 01111233455442 2379999999 9999999
Q ss_pred EEEEE
Q psy14886 65 QCRAK 69 (505)
Q Consensus 65 ~C~~~ 69 (505)
.|...
T Consensus 92 YC~~~ 96 (112)
T d1ncwl1 92 YCWQG 96 (112)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99654
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.79 E-value=3.5e-05 Score=54.31 Aligned_cols=67 Identities=27% Similarity=0.470 Sum_probs=46.5
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCCC---CCCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSET---LPLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~~---~~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ .... .....++|+.+.. ..|.|.+++ .+|+
T Consensus 12 vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~-~eDt 90 (120)
T d1dn0b1 12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT-AADT 90 (120)
T ss_dssp ECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGGC
T ss_pred ECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccc-cccc
Confidence 58999999999999865 456899993 3322 1110 0112356787632 259999999 9999
Q ss_pred eEEEEEE
Q psy14886 62 AMYQCRA 68 (505)
Q Consensus 62 G~Y~C~~ 68 (505)
+.|.|..
T Consensus 91 A~YYCAr 97 (120)
T d1dn0b1 91 AVYYCAR 97 (120)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 9999953
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.79 E-value=2e-05 Score=56.87 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=44.7
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEEC--CEECc------CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRN--GELLN------SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~--~~~l~------~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++|+|.|.... .....+.|||. ++.+. .........+++... ...|.|.+++ .+|+|.|.
T Consensus 11 ~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~Yy 89 (115)
T d1fo0a_ 11 VMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ-IEDSAVYF 89 (115)
T ss_dssp EETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC-GGGCEEEE
T ss_pred EcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC-cccccccc
Confidence 468999999999854 34456899992 22111 011111122344442 1369999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 90 Ca~~~ 94 (115)
T d1fo0a_ 90 CAMRG 94 (115)
T ss_dssp EEEEC
T ss_pred ceeec
Confidence 98764
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.79 E-value=2.9e-05 Score=53.50 Aligned_cols=68 Identities=25% Similarity=0.436 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEEC--CEEC------cCCCC---CCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRN--GELL------NSETL---PLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~--~~~l------~~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|. ..-.+.|+|. |+.+ ..... ....++|+.+.. ..|+|.+++ .+|+
T Consensus 5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~-~eDt 83 (107)
T d1sjva_ 5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLE-PEDT 83 (107)
T ss_dssp CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCC-GGGC
T ss_pred ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCC-cccc
Confidence 6899999999999874 3566899993 3222 11111 112346776632 259999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
+.|.|...
T Consensus 84 AvYyCA~~ 91 (107)
T d1sjva_ 84 AVYYCYTH 91 (107)
T ss_dssp SEEEEEEC
T ss_pred eeeeEecc
Confidence 99999653
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.79 E-value=4.2e-05 Score=54.98 Aligned_cols=70 Identities=23% Similarity=0.215 Sum_probs=43.7
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEE--CCEECc------CCCCCCCCCCcEEE--E----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFR--NGELLN------SETLPLEDQDRYFI--Q----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~--~~~~l~------~~~~~~~~~~~~~~--~----~~~L~i~~~~~~~d~G~Y~ 65 (505)
|.+|++|+|.|..... ....+.||| .+..+. ..........+... . ..+|.|.+++ .+|+|.|.
T Consensus 12 v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsg~Yy 90 (114)
T d2ak4d1 12 VVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ-VVDSAVYF 90 (114)
T ss_dssp EETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC-GGGCEEEE
T ss_pred EeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc-cccCCCce
Confidence 4689999999997643 345689999 222111 00011111122222 2 2379999999 99999999
Q ss_pred EEEEcc
Q psy14886 66 CRAKNQ 71 (505)
Q Consensus 66 C~~~~~ 71 (505)
|.+...
T Consensus 91 Ca~~~~ 96 (114)
T d2ak4d1 91 CALSGF 96 (114)
T ss_dssp EEEECS
T ss_pred EeCCCC
Confidence 987644
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.78 E-value=3.6e-05 Score=53.73 Aligned_cols=68 Identities=28% Similarity=0.454 Sum_probs=47.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEECc------CCC---CCCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELLN------SET---LPLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l~------~~~---~~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+. ... .....++|+.+.. ..|.|.+++ .+|+
T Consensus 12 vkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~-~eDt 90 (117)
T d1c5db1 12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ-TEDT 90 (117)
T ss_dssp ECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCC-GGGC
T ss_pred ECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccc-cCcc
Confidence 57999999999999854 46789999 333221 110 0112356777632 259999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
+.|.|...
T Consensus 91 AvYYCAr~ 98 (117)
T d1c5db1 91 AIYFCTRE 98 (117)
T ss_dssp EEEEEEEC
T ss_pred eEEEEecc
Confidence 99999643
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.78 E-value=1.7e-05 Score=56.65 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=42.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CE-E---Cc--C-C-CCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GE-L---LN--S-E-TLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~-~---l~--~-~-~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~ 65 (505)
+++|++++|.|...+ ....+.|||. |+ + +. . . ........++.. ....|.|.+++ .+|+|.|.
T Consensus 13 ~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~Yy 90 (110)
T d2aq2a1 13 AVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT-PSQTSVYF 90 (110)
T ss_dssp ECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC-GGGCEEEE
T ss_pred EcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC-HhhCEEEE
Confidence 468999999998754 3567999992 22 1 10 0 0 000011122222 12479999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 91 Ca~~~ 95 (110)
T d2aq2a1 91 CASGG 95 (110)
T ss_dssp EEEEE
T ss_pred EeeCC
Confidence 98763
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.78 E-value=0.00013 Score=51.95 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=46.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec---C------CCcEEEeeC-----CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG---S------GGRRKIFEN-----GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~---~------~~~~~~~~~-----~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|...+.....+.|++ .|+. +. . ..+.....+ .+|.|.+++.+|+|.|
T Consensus 8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 87 (111)
T d1bd2d1 8 PSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVY 87 (111)
T ss_dssp SEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred CEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEE
Confidence 55678999999999987666556789988 2321 10 0 112222111 1499999999999999
Q ss_pred EEEEEc
Q psy14886 158 SCTATN 163 (505)
Q Consensus 158 ~C~~~~ 163 (505)
.|.+..
T Consensus 88 yCa~~~ 93 (111)
T d1bd2d1 88 FCAAME 93 (111)
T ss_dssp EEEEES
T ss_pred EeeccC
Confidence 998764
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=97.77 E-value=6.8e-05 Score=53.60 Aligned_cols=67 Identities=31% Similarity=0.406 Sum_probs=46.9
Q ss_pred ceEEeeCCCeEEEEeecCCC--CCCeEEEEE--CCE----EecCCCcEEEeeCC-----CEEEcCCCCCCCEEEEEEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAA--PKPKFVWKK--DGN----IIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~--p~~~i~W~~--~g~----~~~~~~~~~~~~~~-----~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+.+.+|++++|.|...+. ....+.|++ .|. .+....+.....+. .|.|.+++.+|+|.|.|.+..
T Consensus 8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 8 RTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY 87 (113)
T ss_dssp SEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence 45678899999999987543 345799997 222 22233444333221 499999999999999999864
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=7e-05 Score=51.18 Aligned_cols=65 Identities=15% Similarity=0.396 Sum_probs=40.9
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCCC-----CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLPL-----EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.++.++|.|.+.| +| ...++|.+||+++....... ...+.+. ....|. +. ..+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~-~~s~l~---v~-~~~~~~ytC~V~H~s 85 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQ-GWITLA---VP-PGEEQRYTCQVEHPG 85 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEE-EEEEEE---EC-TTCGGGEEEEEECTT
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEE-EEEEEE---EC-CCCCCEEEEEEEeCC
Confidence 3577899999998 56 57999999999986432110 0111111 112333 34 456668999998753
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.77 E-value=6.7e-05 Score=52.09 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=42.5
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.|+..+|.|.+.| +| ...|+|.+||+++..... .. ..++.|... +.|.+.. .+...|+|.+.+..
T Consensus 17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~-S~L~v~~----~~~~~ytC~V~H~s 88 (101)
T d1fnga1 17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKF-HYLTFLP----STDDFYDCEVDHWG 88 (101)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEE-EEEEECC----CTTCCEEEEEECTT
T ss_pred cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEE-EEeEEcC----CCCCEEEEEEEECC
Confidence 45788899999998 46 589999999998864311 11 112233222 3555543 33457999998754
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.76 E-value=7.3e-05 Score=53.53 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=48.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec---C------CCcEEEeeC-----CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG---S------GGRRKIFEN-----GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~---~------~~~~~~~~~-----~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|...+.....+.|++ .|+. +. . ..+...... ..|.|.+++.+|+|.|
T Consensus 8 ~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Y 87 (113)
T d2bnqd1 8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATY 87 (113)
T ss_dssp SEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred CEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEE
Confidence 55778999999999998766556899998 2221 10 1 112221111 1499999999999999
Q ss_pred EEEEEcCCC
Q psy14886 158 SCTATNVHG 166 (505)
Q Consensus 158 ~C~~~~~~g 166 (505)
.|.+....+
T Consensus 88 yCa~~~~~~ 96 (113)
T d2bnqd1 88 LCAVRPTSG 96 (113)
T ss_dssp EEEEEESSS
T ss_pred eEeEecCCC
Confidence 999875543
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.76 E-value=4.4e-05 Score=53.32 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=47.0
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCCCC---CCCCCCcEEEEC------CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSETL---PLEDQDRYFIQD------NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ ..... ....++|+.+.. ..|.|.+++ .+|+
T Consensus 12 vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~-~eDT 90 (116)
T d1a2yb_ 12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLH-TDDT 90 (116)
T ss_dssp ECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCC-GGGC
T ss_pred ECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeee-eccc
Confidence 57999999999999854 567899993 3322 11100 011346776632 259999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
+.|.|...
T Consensus 91 AvYYCAr~ 98 (116)
T d1a2yb_ 91 ARYYCARE 98 (116)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 99999754
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.75 E-value=5.8e-05 Score=53.78 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=43.8
Q ss_pred CCCCCceEEEEEEecc-----CCCeEEEEEC--CEECc----C-CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGV-----PDVTYSWFRN--GELLN----S-ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-----p~~~~~W~~~--~~~l~----~-~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y 64 (505)
|.+|++|+|.|..++. ....+.||+. |+... . .........++... ...|.|.+++ .+|+|.|
T Consensus 13 v~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~-~~DsAvY 91 (112)
T d1mjul1 13 VTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVE-AEDVGVY 91 (112)
T ss_dssp ECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCC-GGGCEEE
T ss_pred ECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcc-ccCCceE
Confidence 4689999999998642 2467999983 22111 0 00011223455442 2469999999 9999999
Q ss_pred EEEEE
Q psy14886 65 QCRAK 69 (505)
Q Consensus 65 ~C~~~ 69 (505)
.|...
T Consensus 92 yCa~~ 96 (112)
T d1mjul1 92 YCLQH 96 (112)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99643
|
| >d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Purple acid phosphatase, N-terminal domain family: Purple acid phosphatase, N-terminal domain domain: Purple acid phosphatase, N-terminal domain species: Sweet potato (Ipomoea batatas) [TaxId: 4120]
Probab=97.75 E-value=0.00027 Score=50.55 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCceeeeecc--ccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeee-------cCceeeEEEEcCCccce
Q psy14886 388 QAPSRIGGGGG--KIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE-------YGNVGIAVVRIPSEFYY 458 (505)
Q Consensus 388 ~~P~~~~~~~~--~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~L~p~ 458 (505)
.+|..+.+.-. ..+++.|+|.-. .+..+ .-.|+|....+..+....... ..........|++|.|+
T Consensus 23 ~~P~qvhl~~~~~~~tsm~VsW~T~--~~~~~---~~~V~yG~~~~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~ 97 (119)
T d1xzwa1 23 NAPQQVHITQGDYEGRGVIISWTTP--YDKAG---ANKVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYD 97 (119)
T ss_dssp TCCEEEEEEECSSSSSCEEEEEEES--SCCTT---TTEEEEEETTCCCCEEEECEEECCEETTEECCEEEEEEECCCCTT
T ss_pred CCCCEEEEEecCCCCCEEEEEEECC--CCCCC---CCEEEEcCCCCCCccEEEEEEEEeecccccCCeEEEEEECCCCCC
Confidence 46766666533 467999999972 22111 127788776544444332211 01123356789999999
Q ss_pred eeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 459 TEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 459 ~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
|.|.+|| |.+.+|+...|+|+|
T Consensus 98 T~Y~YrV------G~~~~S~~~~F~T~P 119 (119)
T d1xzwa1 98 TKYYYRL------GFGDAKRQFWFVTPP 119 (119)
T ss_dssp CEEEEEE------CCGGGCEEEEEECCC
T ss_pred CEEEEEE------CCCCccceEEEeCCC
Confidence 9999998 444579999999987
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.75 E-value=2.8e-05 Score=54.76 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=47.0
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc------C-CCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN------S-ETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~------~-~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+. . ... ....++|+.+.. -.|.|.+++ .+|
T Consensus 12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~-~eD 90 (121)
T d2p49b1 12 VQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLK-PED 90 (121)
T ss_dssp EETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecc-ccc
Confidence 57999999999998754 567899993 32221 1 100 111346787743 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d2p49b1 91 TATYYCAAG 99 (121)
T ss_dssp CEEEEEEES
T ss_pred eeEEeeecc
Confidence 999999753
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.75 E-value=0.00013 Score=52.00 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=44.1
Q ss_pred CceEEeeCCCeEEEEeecCCC-----CCCeEEEEE--CCEE---e-cC--------CCcEEEeeCC---CEEEcCCCCCC
Q psy14886 96 ESETYAGEGGNVTIFCNPEAA-----PKPKFVWKK--DGNI---I-GS--------GGRRKIFENG---NLLISPVSRDD 153 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~-----p~~~i~W~~--~g~~---~-~~--------~~~~~~~~~~---~l~i~~v~~~d 153 (505)
++.+.+.+|++|+|.|...+. ....+.|++ .|+. + .. ..++.....+ .|.|.+++.+|
T Consensus 8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~D 87 (112)
T d1mjul1 8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAED 87 (112)
T ss_dssp CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccC
Confidence 456778999999999986543 234789987 2221 1 10 1222222222 49999999999
Q ss_pred CEEEEEEEE
Q psy14886 154 SGIYSCTAT 162 (505)
Q Consensus 154 ~G~y~C~~~ 162 (505)
++.|.|...
T Consensus 88 sAvYyCa~~ 96 (112)
T d1mjul1 88 VGVYYCLQH 96 (112)
T ss_dssp CEEEEEEEC
T ss_pred CceEEEEeC
Confidence 999999543
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.75 E-value=5.6e-05 Score=52.61 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=43.6
Q ss_pred CCCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCCC---CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLPL---EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
++.|+..+|.|.+.| +| ...|+|.+||..+....... ..++.|.+ .+.|.+ . .+|...|+|.+.+.....
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~-~S~L~v---~-~~~~~~ytC~V~H~~l~~ 89 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQA-FSYLNF---T-PEPSDIFSCIVTHEPDRY 89 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEE-EEEEEE---C-CCTTCCEEEEEEETTTTE
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEE-EEEEEE---e-cCCCCEEEEEEEeCCCCC
Confidence 357889999999998 56 58999999999875321100 01111211 134444 3 444557999999765433
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=4.3e-05 Score=53.50 Aligned_cols=67 Identities=21% Similarity=0.383 Sum_probs=44.7
Q ss_pred CCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 4 QADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 4 G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
++.++|.|.+.| +| ...|+|.+||+++..... .. ..++.|. ..+.|.|..-. ......|+|.+.+..
T Consensus 20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys-~~S~L~v~~~~-w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYM-ASSYLTLTARA-WERHSSYSCQVTHEG 92 (102)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEE-EEEEEEEEHHH-HTTCCEEEEEEEETT
T ss_pred CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEE-EEEEEEECHHH-hCCCCEEEEEEEECC
Confidence 467899999988 45 589999999998764311 11 1223333 23567777655 445568999998754
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.74 E-value=0.00014 Score=50.35 Aligned_cols=66 Identities=15% Similarity=0.333 Sum_probs=42.1
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.|+.++|.|.+.| +| ...|+|.+||.++..... ....++.|.. .+.|.+ . ..+.+.|+|.+.+..
T Consensus 16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~-~s~l~v---~-~~~~~~ytC~V~H~s 86 (99)
T d1lk2b_ 16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYI-LAHTEF---T-PTETDTYACRVKHDS 86 (99)
T ss_dssp CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEE-EEEEEE---C-CCSSCCEEEEEECTT
T ss_pred cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEE-EEEeEe---c-CcCCCEEEEEEEeCC
Confidence 46888999999998 45 588999999998863211 0011112211 133444 3 455668999998754
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.73 E-value=6e-05 Score=52.68 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------c-CC---CCCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------N-SE---TLPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~-~~---~~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
+++|+++.|.|.++|.. .-.+.|+| .|+-+ . .. ......++|+.+. + ..|.|.+++ .+|
T Consensus 12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~-~eD 90 (117)
T d1jnhb1 12 ARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLT-SED 90 (117)
T ss_dssp CCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccC-CCc
Confidence 58999999999999854 56789999 22211 1 10 0011235677763 2 258999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (117)
T d1jnhb1 91 SAVYSCSRG 99 (117)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999653
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.73 E-value=9.9e-05 Score=52.61 Aligned_cols=68 Identities=24% Similarity=0.434 Sum_probs=47.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc------C-CC---CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN------S-ET---LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~------~-~~---~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+-+. . .. .....++|+.+.. ..|.|.+++ .+|
T Consensus 12 vkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~-~eD 90 (135)
T d1ieha_ 12 VQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLK-SED 90 (135)
T ss_dssp ECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCC-SSS
T ss_pred ECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeC-ccc
Confidence 58999999999999854 566999983 33221 1 10 0112456787742 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (135)
T d1ieha_ 91 TAVYYCAKY 99 (135)
T ss_dssp CEEEEEEEB
T ss_pred ceeeEEEEe
Confidence 999999754
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=2.3e-05 Score=55.21 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=45.5
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC----CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL----PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~----~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
.++.++|.|.+.+ +| ...|+|++||+.+..... .. ..++.|.. .+.|.|..-. ......|+|.+.+...
T Consensus 18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~-~S~L~v~~~~-W~~g~~ytC~V~H~~l 93 (105)
T d1fp5a2 18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFV-FSRLEVTRAE-WEQKDEFICRAVHEAA 93 (105)
T ss_dssp SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEE-EEEEEECHHH-HTTGGGEEEEEECTTS
T ss_pred cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEE-EEEEEECHHH-cCCCCEEEEEEEECCC
Confidence 4678999999988 56 589999999998864311 11 12223333 3467776555 3445579999987543
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.73 E-value=3.6e-05 Score=53.83 Aligned_cols=67 Identities=24% Similarity=0.402 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cC-CCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NS-ETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~-~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+-+ .. ... ....++|+.+.. -.|+|.+++ .+|
T Consensus 12 ~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~-~eD 90 (118)
T d1nlbh1 12 KKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK-NED 90 (118)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc-cCc
Confidence 57999999999999854 466899992 3211 11 100 011356777642 258999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 tAvYYCAr 98 (118)
T d1nlbh1 91 TATYFCAR 98 (118)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEee
Confidence 99999953
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.72 E-value=7.7e-05 Score=52.27 Aligned_cols=69 Identities=23% Similarity=0.436 Sum_probs=47.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC-CC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE-TL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~-~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+ ... .. ....++|+.+.. -.|.|.+++ .+|
T Consensus 12 vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~-~eD 90 (118)
T d2fbjh1 12 VQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR-SED 90 (118)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccC-CCc
Confidence 58999999999999854 45689998 33211 111 00 112356777642 259999999 999
Q ss_pred CeEEEEEEEc
Q psy14886 61 PAMYQCRAKN 70 (505)
Q Consensus 61 ~G~Y~C~~~~ 70 (505)
++.|.|....
T Consensus 91 tAvYYCAr~~ 100 (118)
T d2fbjh1 91 TALYYCARLH 100 (118)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEeeEec
Confidence 9999997643
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.72 E-value=0.00013 Score=52.58 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=48.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEec-----------------CCCcEEEeeC-C---CEEEcCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIG-----------------SGGRRKIFEN-G---NLLISPVSRDD 153 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~~-----------------~~~~~~~~~~-~---~l~i~~v~~~d 153 (505)
....+.+|++++|.|...+.....+.|++ .|+.+. ...++..... + .|.|.++..+|
T Consensus 9 ~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D 88 (118)
T d2ij0c1 9 SMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPED 88 (118)
T ss_dssp SEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGG
T ss_pred CeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccccc
Confidence 44678899999999997666566899998 332110 0123333221 1 49999999999
Q ss_pred CEEEEEEEEcCC
Q psy14886 154 SGIYSCTATNVH 165 (505)
Q Consensus 154 ~G~y~C~~~~~~ 165 (505)
+|.|.|.+....
T Consensus 89 sa~YyCa~~~~~ 100 (118)
T d2ij0c1 89 SGFYVCSALAGS 100 (118)
T ss_dssp CEEEEEEEECSS
T ss_pred CceEEEEEecCC
Confidence 999999987543
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.72 E-value=2.7e-05 Score=55.34 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=45.3
Q ss_pred CCCCCceEEEEEEeccC--C--CeEEEEE--CCEECc------CCCC---CCCCCCcEEEEC------CeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--D--VTYSWFR--NGELLN------SETL---PLEDQDRYFIQD------NVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~--~~~~W~~--~~~~l~------~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~ 59 (505)
|++|++++|.|.++|.. . ..+.|+| .|+.+. .... ....++|+.+.. ..|+|.+++ .+
T Consensus 12 vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~-~e 90 (123)
T d1r0ah1 12 VQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE-TA 90 (123)
T ss_dssp ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC-GG
T ss_pred ECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc-cc
Confidence 57899999999998743 2 3578998 233221 1111 011346776632 249999999 99
Q ss_pred CCeEEEEEEE
Q psy14886 60 DPAMYQCRAK 69 (505)
Q Consensus 60 d~G~Y~C~~~ 69 (505)
|++.|.|...
T Consensus 91 DsAvYyCAr~ 100 (123)
T d1r0ah1 91 DTAIYYCAQS 100 (123)
T ss_dssp GCEEEEEEEE
T ss_pred cceEEeeccc
Confidence 9999999743
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.72 E-value=5e-05 Score=52.80 Aligned_cols=67 Identities=25% Similarity=0.452 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEE------CcC-CCC---CCCCCCcEEEE--CC----eEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GEL------LNS-ETL---PLEDQDRYFIQ--DN----VLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~------l~~-~~~---~~~~~~~~~~~--~~----~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+- +.. ... ....++|+.+. ++ .|+|.+++ .+|
T Consensus 12 vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~-~eD 90 (114)
T d1indh1 12 VKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLR-SED 90 (114)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeec-cCc
Confidence 57999999999998854 567899992 321 111 111 11234677764 22 49999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 tAvYYCA~ 98 (114)
T d1indh1 91 TALYFCAS 98 (114)
T ss_dssp CEEEEEEC
T ss_pred ccEEEECC
Confidence 99999964
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.72 E-value=2.8e-05 Score=55.41 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=44.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.........+.|||. |+.+. ..........++... ...|.|.+++ .+|+|.|.|.
T Consensus 12 ~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~-~~Dsa~YyCA 90 (110)
T d1ac6a_ 12 LSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQ-ESDSAVYYCA 90 (110)
T ss_dssp EETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEEC-GGGCEEEEEE
T ss_pred ECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcC-cCCCccccee
Confidence 46899999999986544567999992 22111 001111122344331 2479999999 9999999998
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+..
T Consensus 91 ~~~ 93 (110)
T d1ac6a_ 91 LSG 93 (110)
T ss_dssp EEE
T ss_pred ecC
Confidence 764
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.71 E-value=0.00013 Score=50.09 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=42.2
Q ss_pred CCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC----CCCCCCCCcEEEEC------CeEEEEcCCCCCCCe
Q psy14886 3 NQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE----TLPLEDQDRYFIQD------NVLTIRYLNPERDPA 62 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~----~~~~~~~~~~~~~~------~~L~i~~~~~~~d~G 62 (505)
+|++++|.|.++|.. .-.+.|+| .|+.+ ... ......++|+.+.. ..|+|.+++ .+|++
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~-~eDTA 79 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT-SEDSA 79 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC----CCS
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeecc-ccccE
Confidence 699999999999854 46799998 34332 111 00112456777643 269999999 99999
Q ss_pred EEEEEEEc
Q psy14886 63 MYQCRAKN 70 (505)
Q Consensus 63 ~Y~C~~~~ 70 (505)
.|.|....
T Consensus 80 vYYCAr~~ 87 (103)
T d1oari_ 80 VYYCARMW 87 (103)
T ss_dssp EEEEEEEE
T ss_pred EEEeEEEC
Confidence 99997543
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.0004 Score=49.09 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=45.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---e-c--------CCCcEEEeeC---C--CEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---I-G--------SGGRRKIFEN---G--NLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~-~--------~~~~~~~~~~---~--~l~i~~v~~~d~G 155 (505)
..+...+|++++|.|...... ...+.|++. +.. + . ...+..+..+ + +|.|.+++.+|+|
T Consensus 4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG 83 (108)
T d1hkfa_ 4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG 83 (108)
T ss_dssp EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence 346688999999999865432 336789872 211 1 0 1123333221 1 4999999999999
Q ss_pred EEEEEEEcCC
Q psy14886 156 IYSCTATNVH 165 (505)
Q Consensus 156 ~y~C~~~~~~ 165 (505)
.|.|.+....
T Consensus 84 ~Y~C~v~~~~ 93 (108)
T d1hkfa_ 84 HYWCRIYRPS 93 (108)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEecCC
Confidence 9999987543
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.70 E-value=3.3e-05 Score=54.74 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=46.3
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC----CCCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE----TLPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~----~~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+ ... ......++|+.+. . ..|.|.+++ .+|
T Consensus 12 ~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~-~eD 90 (119)
T d1qnzh_ 12 VKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT-SDD 90 (119)
T ss_dssp ECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC-GGG
T ss_pred ECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC-ccc
Confidence 57899999999998753 45689999 33322 110 1111234677663 1 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 sAvYYCA~~ 99 (119)
T d1qnzh_ 91 SAVYYCAIH 99 (119)
T ss_dssp CEEEEEEEC
T ss_pred eeEEEEEEe
Confidence 999999654
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.70 E-value=6.5e-05 Score=53.61 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=44.6
Q ss_pred CCCCCceEEEEEEecc-----CCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGV-----PDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-----p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y 64 (505)
+.+|++++|.|..++. ....+.||+. |+... ..........++... ..+|.|.+++ .+|+|.|
T Consensus 14 ~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~-~~DsavY 92 (113)
T d1n4xl_ 14 VSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE-AEDLGIY 92 (113)
T ss_dssp ECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC-GGGCEEE
T ss_pred ECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC-cccCEEE
Confidence 4689999999998542 2357999993 22111 001112234455543 2489999999 9999999
Q ss_pred EEEEE
Q psy14886 65 QCRAK 69 (505)
Q Consensus 65 ~C~~~ 69 (505)
.|...
T Consensus 93 yCa~~ 97 (113)
T d1n4xl_ 93 YCFQG 97 (113)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99654
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.70 E-value=0.00012 Score=52.53 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=43.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc------C-CC-CCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN------S-ET-LPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~------~-~~-~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+++|++++|.|... .....+.|||. ++.+. . .. .......++... ..+|.|.+++ .+|+|.|.
T Consensus 11 ~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~DSa~Yy 88 (114)
T d1ogae1 11 RKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ-KNPTAFYL 88 (114)
T ss_dssp EETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC-SCCCEEEE
T ss_pred EcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC-cCCceeEE
Confidence 46899999999985 34568999992 21110 0 00 000112233321 2479999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 89 Ca~~~ 93 (114)
T d1ogae1 89 CASSS 93 (114)
T ss_dssp EEEES
T ss_pred Eeecc
Confidence 98764
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.70 E-value=4.5e-05 Score=53.39 Aligned_cols=67 Identities=13% Similarity=0.320 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC-C---CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE-T---LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~-~---~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+++|++++|.|.++|.. .-.+.|+| .|+.+ ... . .....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~-~eD 90 (118)
T d2jelh1 12 VRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT-SED 90 (118)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc-cCc
Confidence 57999999999999865 45799999 23211 110 0 0011246776632 259999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 TAvYYCAr 98 (118)
T d2jelh1 91 SAIYYCAR 98 (118)
T ss_dssp CEEEEEEE
T ss_pred ceeeeEEE
Confidence 99999954
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.70 E-value=2.6e-05 Score=56.23 Aligned_cols=68 Identities=24% Similarity=0.346 Sum_probs=45.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEE---Cc--CCCCCCCCCCcEEEE--C--CeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GEL---LN--SETLPLEDQDRYFIQ--D--NVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~---l~--~~~~~~~~~~~~~~~--~--~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|...+.-...+.|||. +.. |. ..........++... + ..|.|.+++ .+|+|.|.|.+.
T Consensus 13 ~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~-~~DsavYyCa~~ 91 (119)
T d1f3rb2 13 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQ-PEDVATYFCYQY 91 (119)
T ss_dssp CCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCC-GGGCSEEEEEEE
T ss_pred ECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCc-cCCCeEEEeecc
Confidence 57899999999986544567999993 211 11 001111233455432 2 379999999 999999999765
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=9.1e-05 Score=53.92 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=44.8
Q ss_pred ceEEeeCCCeEEEEeecCCC-------CCCeEEEEECCEEec--------C---------CCcEEEee-----CCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-------PKPKFVWKKDGNIIG--------S---------GGRRKIFE-----NGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-------p~~~i~W~~~g~~~~--------~---------~~~~~~~~-----~~~l~i~ 147 (505)
..+.+.+|++|.|.|..... ....+.|++....-. . .++..+.. +.+|.|.
T Consensus 9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 88 (121)
T d2g5ra1 9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIR 88 (121)
T ss_dssp SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEEC
T ss_pred CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEEC
Confidence 45779999999999986311 123688988532210 0 12344332 2269999
Q ss_pred CCCCCCCEEEEEEEEc
Q psy14886 148 PVSRDDSGIYSCTATN 163 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~ 163 (505)
+++.+|+|.|.|.+..
T Consensus 89 ~v~~~DsG~Y~C~v~~ 104 (121)
T d2g5ra1 89 DARMSDAGRYFFRMEK 104 (121)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred CCChHHCEEEEEEEEe
Confidence 9999999999999964
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.69 E-value=0.00014 Score=51.39 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred eEEeeCCCeEEEEeecCCCCC---CeEEEEE--CCEEec------------CCCcEEEeeCC---CEEEcCCCCCCCEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPK---PKFVWKK--DGNIIG------------SGGRRKIFENG---NLLISPVSRDDSGIY 157 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~---~~i~W~~--~g~~~~------------~~~~~~~~~~~---~l~i~~v~~~d~G~y 157 (505)
.+.+.+|++++|.|...+... -.+.|++ .|+... ...++.....+ .|.|.+++.+|+|.|
T Consensus 9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y 88 (110)
T d1oaql_ 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY 88 (110)
T ss_dssp EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence 467889999999999865422 2488987 232210 01233322222 499999999999999
Q ss_pred EEEEEc
Q psy14886 158 SCTATN 163 (505)
Q Consensus 158 ~C~~~~ 163 (505)
.|.+..
T Consensus 89 yCa~~~ 94 (110)
T d1oaql_ 89 FCALWY 94 (110)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 998764
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.69 E-value=4.3e-05 Score=53.47 Aligned_cols=69 Identities=22% Similarity=0.403 Sum_probs=47.5
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC-C---CCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE-T---LPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~-~---~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
+++|++++|.|.++|.. .-.+.|+| .|+.+ ... . .....++|+.+. . ..|.|.+++ .+|
T Consensus 12 ~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~-~eD 90 (117)
T d1iqdb1 12 KKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLR-SDD 90 (117)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccC-cCc
Confidence 47899999999999854 46689999 33322 111 0 011245677663 2 259999999 999
Q ss_pred CeEEEEEEEc
Q psy14886 61 PAMYQCRAKN 70 (505)
Q Consensus 61 ~G~Y~C~~~~ 70 (505)
++.|.|....
T Consensus 91 tAvYYCA~~~ 100 (117)
T d1iqdb1 91 TAVYYCAVPD 100 (117)
T ss_dssp CEEEEEEECS
T ss_pred ceEEEEeEcC
Confidence 9999998653
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.69 E-value=4.1e-05 Score=54.67 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=44.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc----C-CCCCCCCCCcEEE--E----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN----S-ETLPLEDQDRYFI--Q----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~----~-~~~~~~~~~~~~~--~----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+.+|++++|.|..++.. ...+.|+|. ++.+. . ........+++.. . ...|.|.+++ .+|+|.|.
T Consensus 12 v~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~-~~Dsa~Yy 90 (111)
T d1cd0a_ 12 ESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLK-TEDEADYY 90 (111)
T ss_dssp ECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCC-cccCcEEE
Confidence 47899999999986533 355999993 22111 0 0011112344443 2 2379999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|....
T Consensus 91 CA~~~ 95 (111)
T d1cd0a_ 91 CQSYD 95 (111)
T ss_dssp EEEEE
T ss_pred Eeecc
Confidence 98653
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.69 E-value=4.2e-05 Score=53.66 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEECc-------CCCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELLN-------SETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l~-------~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+. .... ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~-~eD 90 (115)
T d1f3dh1 12 VKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLT-FED 90 (115)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecC-cCC
Confidence 57899999999998753 46789999 233221 1111 011245776631 259999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 tAvYYCAr 98 (115)
T d1f3dh1 91 SAVYYCAN 98 (115)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEec
Confidence 99999964
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.69 E-value=7.6e-05 Score=52.31 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=46.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cC-CC---CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NS-ET---LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~-~~---~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+-+ .. .. .....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~-~eD 90 (118)
T d1ct8b1 12 VKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT-TED 90 (118)
T ss_dssp ECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC-CCc
Confidence 57899999999999854 56789999 33321 11 10 1112345666531 258999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (118)
T d1ct8b1 91 SAIYYCARY 99 (118)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeee
Confidence 999999654
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.69 E-value=0.00011 Score=52.85 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=45.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec---CCC-------cEEE--ee---CCCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG---SGG-------RRKI--FE---NGNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~---~~~-------~~~~--~~---~~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|++++|.|.........+.|++ .|+. +. ... +... .. ...|.|.+++.+|+|.
T Consensus 8 ~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~ 87 (115)
T d1i9ea_ 8 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAV 87 (115)
T ss_dssp SEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEE
T ss_pred CeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccce
Confidence 45778999999999987655556788987 2221 11 110 1111 11 1259999999999999
Q ss_pred EEEEEEc
Q psy14886 157 YSCTATN 163 (505)
Q Consensus 157 y~C~~~~ 163 (505)
|.|.+..
T Consensus 88 YyCa~~~ 94 (115)
T d1i9ea_ 88 YFCAVSG 94 (115)
T ss_dssp EEEEEEE
T ss_pred ecccccC
Confidence 9998763
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.68 E-value=5.9e-05 Score=53.54 Aligned_cols=68 Identities=24% Similarity=0.434 Sum_probs=47.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cC-CCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NS-ETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~-~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. ++.+ .. ... ....++|+.+.. ..|.|.+++ .+|
T Consensus 11 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~-~eD 89 (124)
T d1zvya1 11 VQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK-SED 89 (124)
T ss_dssp CCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc-CCc
Confidence 68999999999999854 567999993 3322 11 100 011346776632 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 90 tAvYYCAr~ 98 (124)
T d1zvya1 90 TAIYTCGAT 98 (124)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEeec
Confidence 999999764
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.68 E-value=0.00038 Score=49.44 Aligned_cols=67 Identities=24% Similarity=0.480 Sum_probs=44.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---ec-------------CCCcEEEeeC----CCEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---IG-------------SGGRRKIFEN----GNLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~~-------------~~~~~~~~~~----~~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|...+. ...+.|++ .|+. +. ...++..... ..|.|.++..+|+
T Consensus 7 ~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds 85 (111)
T d2esve1 7 SHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDS 85 (111)
T ss_dssp SEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGC
T ss_pred CEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCC
Confidence 45678999999999986543 34899987 2221 10 0122322221 1499999999999
Q ss_pred EEEEEEEEcC
Q psy14886 155 GIYSCTATNV 164 (505)
Q Consensus 155 G~y~C~~~~~ 164 (505)
|.|.|.+...
T Consensus 86 a~YyCa~~~~ 95 (111)
T d2esve1 86 GVYFCASSQD 95 (111)
T ss_dssp EEEEEEEESS
T ss_pred ceEEEeeeCC
Confidence 9999987643
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.68 E-value=9.2e-05 Score=51.18 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=42.4
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---C-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.|+..+|.|.+.| +| ...|+|.+||+++..... . ...++.|.. .+.|.+. .++...|+|.+.+..
T Consensus 17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~-~s~l~v~----~~~~~~ytC~V~H~s 88 (99)
T d1uvqa1 17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFK-ISYLTFL----PSADEIYDCKVEHWG 88 (99)
T ss_dssp CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE-EEEEEEC----CCTTCCEEEEEECTT
T ss_pred cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEE-EEEEEEc----CCCCCEEEEEEEeCC
Confidence 46788999999998 45 588999999998864211 0 111223322 2345554 334457999998754
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.67 E-value=8.2e-05 Score=52.50 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=47.0
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEE------CcCCC----CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGEL------LNSET----LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~------l~~~~----~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+. |.... .....++|+.+.. ..|.|.+++ .+|
T Consensus 12 vkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~-~eD 90 (123)
T d1mqkh_ 12 VQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLK-SED 90 (123)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeec-cCc
Confidence 57999999999998854 45689999 2321 11111 0112356777642 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (123)
T d1mqkh_ 91 TAMYYCVRH 99 (123)
T ss_dssp CEEEEEEEE
T ss_pred ccceeEEec
Confidence 999999754
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.67 E-value=8.3e-05 Score=51.10 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=41.5
Q ss_pred CCeEEEEeecCCCCCCeEEEEE--CCEE---e---c-----CCCcEEEee--C---CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKK--DGNI---I---G-----SGGRRKIFE--N---GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~--~g~~---~---~-----~~~~~~~~~--~---~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
|++|+|.|.........+.|++ .|+. + . ...++.... . .+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 7899999997766666899997 2211 1 1 112232221 1 14999999999999999998753
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.67 E-value=7.5e-05 Score=52.61 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCC-CC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSE-TL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~-~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ ... .. ....++|+.+.. -.|.|.+++ .+|
T Consensus 13 vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~-~eD 91 (122)
T d1vgeh1 13 KKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR-PED 91 (122)
T ss_dssp ECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC-CCc
Confidence 58999999999998865 467899992 3221 110 00 111346776632 159999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 92 tA~YYCAr~ 100 (122)
T d1vgeh1 92 TAVYYCARD 100 (122)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999765
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.67 E-value=0.00011 Score=52.87 Aligned_cols=70 Identities=24% Similarity=0.469 Sum_probs=47.0
Q ss_pred ceEEeeCCCeEEEEeecCCC-CCCeEEEEE--CCE-E--ec------------CCCcEEEeeC-----CCEEEcCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-PKPKFVWKK--DGN-I--IG------------SGGRRKIFEN-----GNLLISPVSRDD 153 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~--~g~-~--~~------------~~~~~~~~~~-----~~l~i~~v~~~d 153 (505)
..+.+.+|++++|.|..... ....+.|++ .|+ + +. ...++....+ .+|.|.+++.+|
T Consensus 8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D 87 (116)
T d1tvda_ 8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTED 87 (116)
T ss_dssp CCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccc
Confidence 55678999999999986433 455799987 222 1 10 1123333211 148999999999
Q ss_pred CEEEEEEEEcCCC
Q psy14886 154 SGIYSCTATNVHG 166 (505)
Q Consensus 154 ~G~y~C~~~~~~g 166 (505)
+|.|.|.+....+
T Consensus 88 sg~YyCa~~~~~~ 100 (116)
T d1tvda_ 88 SATYYCAFTLPPP 100 (116)
T ss_dssp CEEEEEEEECTTT
T ss_pred cccceeeEecCCC
Confidence 9999998875443
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.67 E-value=0.00015 Score=51.52 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=44.1
Q ss_pred ceEEeeCCCeEEEEeecCCC----CCCeEEEEEC--CEEe----c--------CCCcEEEeeC---CCEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA----PKPKFVWKKD--GNII----G--------SGGRRKIFEN---GNLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~----p~~~i~W~~~--g~~~----~--------~~~~~~~~~~---~~l~i~~v~~~d~G 155 (505)
..+.+.+|++|+|.|..... ....+.|++. |+.. . ...++..... ..|.|.+++.+|+|
T Consensus 9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA 88 (111)
T d2gsia1 9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAA 88 (111)
T ss_dssp SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCc
Confidence 45678999999999976432 1235899882 3211 1 1123333222 24999999999999
Q ss_pred EEEEEEEc
Q psy14886 156 IYSCTATN 163 (505)
Q Consensus 156 ~y~C~~~~ 163 (505)
.|.|.+..
T Consensus 89 ~YyCa~~~ 96 (111)
T d2gsia1 89 TYYCSHIR 96 (111)
T ss_dssp EEEEEECS
T ss_pred eEEEEECC
Confidence 99997654
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.66 E-value=0.00041 Score=49.54 Aligned_cols=68 Identities=22% Similarity=0.421 Sum_probs=45.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---e---cC------CCcEEEeeC-----CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I---GS------GGRRKIFEN-----GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~---~~------~~~~~~~~~-----~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|...+. ...+.|++ .|+. + .. ..+.....+ ..|.|.+++.+|+|.|
T Consensus 8 ~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 86 (115)
T d1ogad1 8 QFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLY 86 (115)
T ss_dssp SEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred CeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeE
Confidence 45778999999999997654 34799998 2221 1 01 112212111 1499999999999999
Q ss_pred EEEEEcCC
Q psy14886 158 SCTATNVH 165 (505)
Q Consensus 158 ~C~~~~~~ 165 (505)
.|.+....
T Consensus 87 yCa~~~~~ 94 (115)
T d1ogad1 87 LCAGAGSQ 94 (115)
T ss_dssp EEEEECTT
T ss_pred cccccCCC
Confidence 99887543
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=97.66 E-value=8.9e-05 Score=52.74 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=44.0
Q ss_pred ceEEeeCCCeEEEEeecCCC----CCCeEEEEE--CCEE---e-c--------CCCcEEEeeCC---CEEEcCCCCCCCE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA----PKPKFVWKK--DGNI---I-G--------SGGRRKIFENG---NLLISPVSRDDSG 155 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~----p~~~i~W~~--~g~~---~-~--------~~~~~~~~~~~---~l~i~~v~~~d~G 155 (505)
..+.+.+|++++|.|..... ....+.|++ .|+. + . ...+.....++ .|.|.+++.+|+|
T Consensus 9 ~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 88 (111)
T d1j05a_ 9 ASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVA 88 (111)
T ss_dssp SEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCE
T ss_pred CEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCc
Confidence 55678899999999976432 123599998 3321 1 0 11222222222 4999999999999
Q ss_pred EEEEEEEc
Q psy14886 156 IYSCTATN 163 (505)
Q Consensus 156 ~y~C~~~~ 163 (505)
.|.|.+.+
T Consensus 89 ~YyCa~~~ 96 (111)
T d1j05a_ 89 TYYCQQTN 96 (111)
T ss_dssp EEEEEECS
T ss_pred cEEEeecC
Confidence 99998754
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.66 E-value=1.8e-05 Score=56.88 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=43.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE--CCEECcC------C--CCCCCCCCcEEE-E----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR--NGELLNS------E--TLPLEDQDRYFI-Q----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~--~~~~l~~------~--~~~~~~~~~~~~-~----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+++|++++|.|...+ ....+.||| .++.... . ........++.. . ..+|.|.+++ .+|+|.|.
T Consensus 11 ~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~Yy 88 (113)
T d2ntsp1 11 KTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE-LGDSALYL 88 (113)
T ss_dssp EETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC-cccceeee
Confidence 468999999999754 346799999 2221110 0 000112233332 1 2379999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 89 CA~~~ 93 (113)
T d2ntsp1 89 CASSL 93 (113)
T ss_dssp EEEES
T ss_pred eeeeC
Confidence 98764
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.66 E-value=2.3e-05 Score=56.10 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.+|++|+|.|...+.. ...+.|||. |+.+. ..........++.+. ...|.|.+++ .+|+|.|.|.+
T Consensus 10 ~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~Dsa~YyCa~ 88 (112)
T d1kgcd1 10 SNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRAT-LRDAAVYYCIL 88 (112)
T ss_dssp EETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCC-GGGCEEEEEEC
T ss_pred ECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecc-cccceeEeeeE
Confidence 36899999999986543 355999992 22221 000111122334332 2369999999 99999999987
Q ss_pred Ec
Q psy14886 69 KN 70 (505)
Q Consensus 69 ~~ 70 (505)
..
T Consensus 89 ~~ 90 (112)
T d1kgcd1 89 PL 90 (112)
T ss_dssp CC
T ss_pred ec
Confidence 53
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.65 E-value=5.8e-05 Score=54.73 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=45.3
Q ss_pred CCCCceEEEEEEeccC--CCeEEEEEC--CEECc------C-CCC---CCCCCCcEEEE--C----CeEEEEcCCCCCCC
Q psy14886 2 DNQADLTWTCEAFGVP--DVTYSWFRN--GELLN------S-ETL---PLEDQDRYFIQ--D----NVLTIRYLNPERDP 61 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~------~-~~~---~~~~~~~~~~~--~----~~L~i~~~~~~~d~ 61 (505)
.+|++++|.|.++|.. ...+.|||. ++.+. . ... .-..++|+.+. . ..|.|.+++ .+|+
T Consensus 14 ~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~-~~Ds 92 (123)
T d1hxmb1 14 TLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE-KQDI 92 (123)
T ss_dssp ETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC-GGGC
T ss_pred CCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc-cccC
Confidence 4799999999998743 467999992 22111 0 000 11134577653 1 259999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
|.|.|...
T Consensus 93 a~YyCA~~ 100 (123)
T d1hxmb1 93 ATYYCALW 100 (123)
T ss_dssp EEEEEEEE
T ss_pred cEEEEeee
Confidence 99999865
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.65 E-value=0.00012 Score=52.34 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=48.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCCCCCCCCcEE--EE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETLPLEDQDRYF--IQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~--~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|...+ ....+.|||. |..+. ..........++. .. ..+|.|.+++ .+|+|.|.|.
T Consensus 12 ~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyCa 89 (115)
T d1ogad1 12 IQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQ-PGDTGLYLCA 89 (115)
T ss_dssp EETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCC-GGGCEEEEEE
T ss_pred ECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCC-ccceeeEccc
Confidence 368999999999865 3457999992 22110 0000001112222 21 2479999999 9999999998
Q ss_pred EEcccCce-Ee-eEEEEEE
Q psy14886 68 AKNQLKTR-YS-SAQLRVL 84 (505)
Q Consensus 68 ~~~~~~~~-~~-~~~l~v~ 84 (505)
+....+.. .. -..|.|.
T Consensus 90 ~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 90 GAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp EECTTSSEEECCCEEEEEE
T ss_pred ccCCCCCcEECCCEEEEEe
Confidence 76433221 11 2455555
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.63 E-value=8.3e-05 Score=52.59 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=46.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCCC----CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSET----LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~~----~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+-+ .... .....++|+.+.. ..|+|.+++ .+|
T Consensus 12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~-~eD 90 (122)
T d1bz7b1 12 VQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLR-SED 90 (122)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeec-ccC
Confidence 58999999999999854 467899992 3211 1110 0111346776632 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (122)
T d1bz7b1 91 TAIYYCTRG 99 (122)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEeecC
Confidence 999999754
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.63 E-value=4.2e-05 Score=53.82 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=42.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC--EECc---C--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG--ELLN---S--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~--~~l~---~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|++++|.|.... ....+.||+.. .... . .........++... ..+|.|.+++ .+|+|.|.|...
T Consensus 12 ~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~~ 89 (104)
T d1yqvl1 12 ASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSME-TEDAATYYCQQW 89 (104)
T ss_dssp ECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC-GGGCEEEEEEEC
T ss_pred ECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccC-cccCCeEEEEec
Confidence 368999999998753 34558999931 1110 0 00011123344432 2479999999 999999999754
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.63 E-value=7.7e-05 Score=53.12 Aligned_cols=68 Identities=28% Similarity=0.471 Sum_probs=46.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC-CC---CCCCCCcEEEE--C--C--eEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE-TL---PLEDQDRYFIQ--D--N--VLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~-~~---~~~~~~~~~~~--~--~--~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+ ... .. ....++|+.+. + + .|.|.+++ .+|
T Consensus 11 vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~-~eD 89 (126)
T d1rjca1 11 VQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK-PED 89 (126)
T ss_dssp ECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC-ccc
Confidence 58999999999998743 56789999 23322 111 00 11234677663 2 2 49999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 90 TAvYYCAr~ 98 (126)
T d1rjca1 90 TAMYYCAAD 98 (126)
T ss_dssp CEEEEEEEC
T ss_pred CceeEEEee
Confidence 999999754
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.63 E-value=8.6e-05 Score=53.16 Aligned_cols=68 Identities=26% Similarity=0.457 Sum_probs=46.9
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc-----------CC----CCCCCCCCcEEEEC------CeEEEEcC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN-----------SE----TLPLEDQDRYFIQD------NVLTIRYL 55 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~-----------~~----~~~~~~~~~~~~~~------~~L~i~~~ 55 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+. .+ ......++|+.+.. ..|.|.++
T Consensus 12 vkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l 91 (127)
T d1i3ua_ 12 VQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSL 91 (127)
T ss_dssp CCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred ECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeecc
Confidence 68999999999999854 567899983 22110 00 00112345776632 25999999
Q ss_pred CCCCCCeEEEEEEE
Q psy14886 56 NPERDPAMYQCRAK 69 (505)
Q Consensus 56 ~~~~d~G~Y~C~~~ 69 (505)
+ .+|++.|.|...
T Consensus 92 ~-~eDtAvYYCAr~ 104 (127)
T d1i3ua_ 92 K-PEDTAVYYCAAK 104 (127)
T ss_dssp C-GGGCEEEEEEEE
T ss_pred c-ccceeEEEEEEE
Confidence 9 999999999865
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.63 E-value=5.5e-05 Score=53.00 Aligned_cols=68 Identities=16% Similarity=0.333 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cC-CCC---CCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NS-ETL---PLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~-~~~---~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ .. ... ....++|+.+. + ..|.|.+++ .+|
T Consensus 11 ~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~-~eD 89 (117)
T d1um5h1 11 VKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT-SED 89 (117)
T ss_dssp ECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC-CCc
Confidence 57899999999998854 467899993 3222 11 100 11134677663 1 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 90 tAvYYCAr~ 98 (117)
T d1um5h1 90 SAVYYCARS 98 (117)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999643
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.62 E-value=7.2e-05 Score=52.59 Aligned_cols=68 Identities=26% Similarity=0.428 Sum_probs=46.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------c-CCCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------N-SETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~-~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+++|+++.|.|.++|.. .-.+.|+|. |+.+ . .... ....++|+.+.. ..|+|.+++ .+|
T Consensus 12 ~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~-~eD 90 (119)
T d1rz7h1 12 KKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR-SED 90 (119)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC-ccc
Confidence 47899999999999854 467899983 2211 1 1100 112356777632 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (119)
T d1rz7h1 91 TAVYYCAAD 99 (119)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEeec
Confidence 999999754
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00015 Score=49.69 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=43.7
Q ss_pred eCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEee--CCCEEEc---CCCCCCCEEEEEEEEcCCCce
Q psy14886 102 GEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFE--NGNLLIS---PVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 102 ~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~--~~~l~i~---~v~~~d~G~y~C~~~~~~g~~ 168 (505)
..++.++|.|.+.| +|.+.|.|+++|+.+.......... ++.+.+. .+...+...|+|.+.+..-..
T Consensus 14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~~~~~~~tC~V~h~~l~~ 86 (95)
T d1dr9a2 14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV 86 (95)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccCCccceEEEEEEecCCCC
Confidence 35778899999987 5888999999998876433322222 2322211 123456779999998765443
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.00011 Score=49.65 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=42.0
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.++.++|.|.+.| +| ...|+|.+||+.+..... .. ..++.+.. .+.|.+..- +...|+|.+.+..
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~-~s~l~v~~~----~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQK-WASVVVPLG----KEQYYTCHVYHQG 84 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEE-EEEEEEESS----TTTTCEEEEECSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEE-EEEEEecCc----CCCEEEEEEEECC
Confidence 4678999999998 45 588999999998864321 11 12222222 345666542 2336999998754
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.61 E-value=0.0001 Score=50.91 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=39.6
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.|+..+|.|.+.| +| ...|+|.+||..+..... ....++.|. .+....+. ..+...|+|.+.+..
T Consensus 17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~----~~s~l~~~-~~~~~~ytC~V~H~s 87 (98)
T d1d5mb1 17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ----TLVMLETV-PRSGEVYTCQVEHPS 87 (98)
T ss_dssp ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEE----EEEEEECC-CCTTCEEEEEEECTT
T ss_pred cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEE----EEEEeeEc-CCCCCEEEEEEEECC
Confidence 4677899999998 45 589999999998864311 001112221 22233455 667779999998754
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.61 E-value=6.6e-05 Score=52.72 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCC-CC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSE-TL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~-~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ ... .. ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~-~eD 90 (119)
T d1eapb1 12 VKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT-SED 90 (119)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc-CCc
Confidence 57999999999999854 467899982 3221 111 00 011245776632 259999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 TAvYYCAr 98 (119)
T d1eapb1 91 SAVYFCKR 98 (119)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEE
Confidence 99999964
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.61 E-value=4.8e-05 Score=54.38 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=42.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc------CC--CCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN------SE--TLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~------~~--~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+++|++++|.|..+. ....+.|||. |+.+. .. ........++... +..|.|.+++ .+|+|.|.
T Consensus 11 ~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~DsavYy 88 (112)
T d2bnub1 11 LKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA-PSQTSVYF 88 (112)
T ss_dssp EETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC-HHHCEEEE
Confidence 468999999999753 3567999992 21110 00 0000011222221 2479999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 89 CA~~~ 93 (112)
T d2bnub1 89 CASSY 93 (112)
T ss_dssp EEEEC
T ss_pred EeecC
Confidence 98753
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.61 E-value=3.5e-05 Score=55.22 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CE-ECc---CCCCCCCCCCcEEE------ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GE-LLN---SETLPLEDQDRYFI------QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~-~l~---~~~~~~~~~~~~~~------~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.+|++++|.|..++ ....+.|||. +. +.. .............. ...+|.|.+++ .+|+|.|.|.+
T Consensus 13 v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~YyCa~ 90 (113)
T d1h5ba_ 13 LHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQ-LEDSGTYFCAA 90 (113)
T ss_dssp EETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCC-GGGCEEEEEEE
T ss_pred EcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCC-HhHCEEEEEEe
Confidence 468999999999864 3467999992 21 110 00000000000000 11369999999 99999999988
Q ss_pred Eccc
Q psy14886 69 KNQL 72 (505)
Q Consensus 69 ~~~~ 72 (505)
....
T Consensus 91 ~~~~ 94 (113)
T d1h5ba_ 91 EASS 94 (113)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 6543
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.61 E-value=8.2e-05 Score=52.12 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=45.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC----CCCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE----TLPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~----~~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
+++|++++|.|.++|.. .-.+.|+| .|+-+ ... ......++|+.+. . ..|.|.+++ .+|
T Consensus 12 ~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~-~eD 90 (117)
T d1mfah1 12 ARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT-SED 90 (117)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC-CCc
Confidence 47899999999999854 56788998 33322 110 0011234566653 2 259999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 tAvYYCAr 98 (117)
T d1mfah1 91 SAVYYCTR 98 (117)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEec
Confidence 99999964
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00026 Score=50.36 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=41.0
Q ss_pred EEeeCCCeEEEEeecCCCC---CCe--EEEEECCE-Eec---C------------CCcEEE-eeCCCEEEcCCCCCCCEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAP---KPK--FVWKKDGN-IIG---S------------GGRRKI-FENGNLLISPVSRDDSGI 156 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p---~~~--i~W~~~g~-~~~---~------------~~~~~~-~~~~~l~i~~v~~~d~G~ 156 (505)
+....|++++|.|.....+ ... ..|.++.. .+. . ..+... ..+.+|.|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 4577899999999875432 223 34444332 210 0 011112 123359999999999999
Q ss_pred EEEEEEcC
Q psy14886 157 YSCTATNV 164 (505)
Q Consensus 157 y~C~~~~~ 164 (505)
|.|.+...
T Consensus 84 Y~C~V~~~ 91 (110)
T d1ncna_ 84 YQCIIHHK 91 (110)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999744
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.60 E-value=0.00013 Score=52.41 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=46.4
Q ss_pred CceEEeeCCCeEEEEeecCCC-CCCeEEEEEC--CEEe----c----C-----CCcEEEee--C---CCEEEcCCCCCCC
Q psy14886 96 ESETYAGEGGNVTIFCNPEAA-PKPKFVWKKD--GNII----G----S-----GGRRKIFE--N---GNLLISPVSRDDS 154 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~--g~~~----~----~-----~~~~~~~~--~---~~l~i~~v~~~d~ 154 (505)
+..+.+.+|++|+|.|..... ....+.|++. |+.. . . ..++.... . ..|.|.+++.+|+
T Consensus 6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 85 (115)
T d1fo0a_ 6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS 85 (115)
T ss_dssp CCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence 356789999999999986543 3447899982 2211 0 0 11222221 1 1499999999999
Q ss_pred EEEEEEEEcCC
Q psy14886 155 GIYSCTATNVH 165 (505)
Q Consensus 155 G~y~C~~~~~~ 165 (505)
|.|.|.+....
T Consensus 86 a~YyCa~~~~~ 96 (115)
T d1fo0a_ 86 AVYFCAMRGDY 96 (115)
T ss_dssp EEEEEEEECCC
T ss_pred ccccceeecCC
Confidence 99999987543
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.60 E-value=6e-05 Score=53.30 Aligned_cols=68 Identities=19% Similarity=0.402 Sum_probs=46.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEECc------CCC-C---CCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELLN------SET-L---PLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l~------~~~-~---~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. ...+.|+| .|+.+. ... . ....++|+.+. . ..|.|.+++ .+|
T Consensus 12 vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~-~eD 90 (120)
T d1pg7x1 12 VKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLT-SND 90 (120)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccC-CCc
Confidence 57899999999998754 46789999 333221 110 0 01124577653 2 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tA~YYCAr~ 99 (120)
T d1pg7x1 91 SAVYYCARE 99 (120)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEeeec
Confidence 999999854
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=7.9e-05 Score=53.41 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=44.1
Q ss_pred eEEeeCCCeEEEEeecCCCC-CCeEEEEEC--CEE---e---c-C-----------CCcEEEeeCC---CEEEcCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP-KPKFVWKKD--GNI---I---G-S-----------GGRRKIFENG---NLLISPVSRDD 153 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~--g~~---~---~-~-----------~~~~~~~~~~---~l~i~~v~~~d 153 (505)
...+.+|++|+|.|...+.. ...+.|++. |.. + . . ..++.....+ .|.|.+++.+|
T Consensus 9 ~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~D 88 (114)
T d1akjd_ 9 DRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRREN 88 (114)
T ss_dssp SCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCC
Confidence 34578899999999875543 447899982 111 1 0 0 1223222222 49999999999
Q ss_pred CEEEEEEEEc
Q psy14886 154 SGIYSCTATN 163 (505)
Q Consensus 154 ~G~y~C~~~~ 163 (505)
+|.|.|.+..
T Consensus 89 sg~YyCa~~~ 98 (114)
T d1akjd_ 89 EGYYFCSALS 98 (114)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEeEeEcC
Confidence 9999999874
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.59 E-value=6.8e-05 Score=54.09 Aligned_cols=68 Identities=28% Similarity=0.436 Sum_probs=45.5
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEEC--CEECc------CCCCC---CCCCCcEEEE--C----CeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRN--GELLN------SETLP---LEDQDRYFIQ--D----NVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~--~~~l~------~~~~~---~~~~~~~~~~--~----~~L~i~~~~~~~ 59 (505)
|++|++++|.|.++|.. ...+.|+|. |+.+. ..... ...++|+.+. + -.|+|.+++ .+
T Consensus 12 vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~-~e 90 (132)
T d1tjgh1 12 VKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS-PV 90 (132)
T ss_dssp ECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC-GG
T ss_pred ECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC-cc
Confidence 57899999999998754 236899982 22221 00000 0124677663 2 249999999 99
Q ss_pred CCeEEEEEEE
Q psy14886 60 DPAMYQCRAK 69 (505)
Q Consensus 60 d~G~Y~C~~~ 69 (505)
|++.|.|...
T Consensus 91 DtAvYYCAr~ 100 (132)
T d1tjgh1 91 DTATYFCAHR 100 (132)
T ss_dssp GCEEEEEEEE
T ss_pred cceEEEEEEe
Confidence 9999999765
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.59 E-value=0.00027 Score=49.35 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEEC------cCCCC---CCCCCCcEEEE--C----CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELL------NSETL---PLEDQDRYFIQ--D----NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l------~~~~~---~~~~~~~~~~~--~----~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.++|.. .-.+.|+|. |+.+ ..... ....++|+.+. + ..|.|.+++ .+|+
T Consensus 12 vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~-~eDt 90 (118)
T d1lo4h1 12 VKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLR-SEDT 90 (118)
T ss_dssp ECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCC-GGGC
T ss_pred ECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccccc-CCcc
Confidence 57999999999999854 567899993 3221 11100 01234566663 2 259999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
+.|.|...
T Consensus 91 A~YyCAr~ 98 (118)
T d1lo4h1 91 AIYYCARG 98 (118)
T ss_dssp EEEEEEEE
T ss_pred eEEEeccc
Confidence 99999754
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=97.59 E-value=0.00012 Score=51.53 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=46.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEE---e-c--------CCCcEEEeeCC---CEEEcCCCCCCCEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNI---I-G--------SGGRRKIFENG---NLLISPVSRDDSGIYSC 159 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~---~-~--------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C 159 (505)
+.+.+.+|++++|.|.........+.|++ .|+. + . ...+......+ .|.|.+++.+|+|.|.|
T Consensus 8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC 87 (109)
T d1w72l1 8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC 87 (109)
T ss_dssp SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence 34778999999999997654445799997 2221 1 0 01222222222 48999999999999999
Q ss_pred EEEcC
Q psy14886 160 TATNV 164 (505)
Q Consensus 160 ~~~~~ 164 (505)
.+...
T Consensus 88 A~~~~ 92 (109)
T d1w72l1 88 QVWDS 92 (109)
T ss_dssp EEEET
T ss_pred EecCC
Confidence 88654
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.59 E-value=8.3e-05 Score=51.48 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=42.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEEC--CeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD--NVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
|..|++|+|.|... .+...+.|+|+|...... ........ ..+.|..+. ..|+|.|+|....
T Consensus 17 V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~------~~~~~~~~~~~~f~~~~~~-~~~~G~Y~C~y~~ 80 (99)
T d1nkra2 17 VLAGENVTLSCSSR-SSYDMYHLSREGEAHERR------LPAGPKVNGTFQADFPLGP-ATHGGTYRCFGSF 80 (99)
T ss_dssp ECTTCEEEEEEEES-SCCSEEEEEETTCSSCEE------EECEEEETTEEEEEEEEEE-CCSCEEEEEEEEE
T ss_pred ccCCCeEEEEECCC-CCccEEEEEECCCccccE------EEccccCCccEEEEEeccc-cccCEEEEEEeec
Confidence 46899999999874 457889999998643210 00111122 345788888 8899999997653
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.58 E-value=0.00016 Score=50.68 Aligned_cols=68 Identities=21% Similarity=0.424 Sum_probs=47.1
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEECc------C--C-C---CCCCCCCcEEEE--C----CeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELLN------S--E-T---LPLEDQDRYFIQ--D----NVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l~------~--~-~---~~~~~~~~~~~~--~----~~L~i~~~~~~ 58 (505)
|++|++++|.|.++|.. .-.+.|+| .|+-+. . . . .....++|+.+. + ..|+|.+++ .
T Consensus 12 vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~-~ 90 (120)
T d1dlfh_ 12 VQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR-A 90 (120)
T ss_dssp ECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC-G
T ss_pred ECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc-C
Confidence 57899999999998754 56789999 333221 1 0 0 011234677663 2 259999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|++.|.|...
T Consensus 91 eDtAvYYCA~~ 101 (120)
T d1dlfh_ 91 EDTGIYYCTGI 101 (120)
T ss_dssp GGCEEEEEEEE
T ss_pred CCceEEEeeEe
Confidence 99999999754
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.57 E-value=6.6e-05 Score=52.20 Aligned_cols=67 Identities=18% Similarity=0.381 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------c-CCC---CCCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------N-SET---LPLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~-~~~---~~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
+++|++++|.|.++|.. .-.+.|+| .|+.| . ... .....++|+.+. . ..|.|.+++ .+|
T Consensus 12 ~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~-~eD 90 (116)
T d1mjuh1 12 VKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT-SDD 90 (116)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC-CCC
Confidence 57999999999999854 46789999 23222 1 110 011124577663 2 258999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|..
T Consensus 91 tAvYYCAr 98 (116)
T d1mjuh1 91 SAVYYCAN 98 (116)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEcc
Confidence 99999964
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.57 E-value=5.4e-05 Score=53.44 Aligned_cols=68 Identities=25% Similarity=0.485 Sum_probs=47.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEECc------CC--C----CCCCCCCcEEEE--C----CeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELLN------SE--T----LPLEDQDRYFIQ--D----NVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l~------~~--~----~~~~~~~~~~~~--~----~~L~i~~~~~~ 58 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+. .. . .....++|+.+. + -.|+|.+++ .
T Consensus 12 vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~-~ 90 (122)
T d1q9rb1 12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR-A 90 (122)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC-G
T ss_pred ECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec-c
Confidence 58999999999998854 45689998 333221 10 0 011234677764 2 259999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|++.|.|...
T Consensus 91 eDTAvYYCar~ 101 (122)
T d1q9rb1 91 EDSATYYCARD 101 (122)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEEEec
Confidence 99999999864
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.56 E-value=0.0001 Score=51.67 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=46.0
Q ss_pred CCCCCceEEEEEEeccCC---CeEEEEE--CCEEC------cCCCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPD---VTYSWFR--NGELL------NSETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~---~~~~W~~--~~~~l------~~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|... -.+.|+| .|+-+ ..... ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~-~eD 90 (119)
T d1ncwh1 12 VKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVT-TED 90 (119)
T ss_dssp ECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccc-cCC
Confidence 589999999999998653 3578988 33322 11111 011245776632 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (119)
T d1ncwh1 91 TATYYCAGL 99 (119)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeEe
Confidence 999999754
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.56 E-value=6.5e-05 Score=54.29 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~ 65 (505)
|++|++++|.|.+++.. ...+.|||. |+.+. .........+|+... ...|.|.+++ .+|+|.|.
T Consensus 13 v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~-~~Dsa~Yy 91 (120)
T d1hxma1 13 VSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS-ERDEGSYY 91 (120)
T ss_dssp EETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC-GGGCEEEE
T ss_pred ECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc-ccCCceee
Confidence 46899999999997543 467999982 22111 001111123455442 1489999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|....
T Consensus 92 CA~~~ 96 (120)
T d1hxma1 92 CACDT 96 (120)
T ss_dssp EEEEC
T ss_pred cCccc
Confidence 98654
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.56 E-value=0.0001 Score=52.35 Aligned_cols=68 Identities=25% Similarity=0.383 Sum_probs=46.9
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------c-CCC---CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------N-SET---LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~-~~~---~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+-+ . ... .....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~-~eD 90 (128)
T d2nxyd1 12 KKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR-SDD 90 (128)
T ss_dssp ECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc-ccC
Confidence 57999999999999865 45689988 23222 1 110 1112457777632 258899999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TA~YYCAr~ 99 (128)
T d2nxyd1 91 TAVYFCAGV 99 (128)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeEE
Confidence 999999865
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.56 E-value=5.4e-05 Score=54.10 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=43.0
Q ss_pred CCCCCceEEEEEEecc---C---CCeEEEEEC--CEECc----C-CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGV---P---DVTYSWFRN--GELLN----S-ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~---p---~~~~~W~~~--~~~l~----~-~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~ 63 (505)
+.+|++++|.|..++. . ...+.|||. |+.+. . .........++... ..+|.|.+++ .+|+|.
T Consensus 13 ~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~-~~Dsa~ 91 (113)
T d1q9ra1 13 VSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ-AEDLAV 91 (113)
T ss_dssp EETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC-GGGCEE
T ss_pred ECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc-cCCCeE
Confidence 4689999999987531 1 245999993 22110 0 00011123344432 2379999999 999999
Q ss_pred EEEEEE
Q psy14886 64 YQCRAK 69 (505)
Q Consensus 64 Y~C~~~ 69 (505)
|.|.+.
T Consensus 92 YyCA~~ 97 (113)
T d1q9ra1 92 YYCKQS 97 (113)
T ss_dssp EEEEEC
T ss_pred EEeccc
Confidence 999764
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.56 E-value=0.00015 Score=51.92 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=44.8
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEE--CCEECc------CCCC---CCCCCCcEEEEC------CeEEEEcCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFR--NGELLN------SETL---PLEDQDRYFIQD------NVLTIRYLNPER 59 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~--~~~~l~------~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~ 59 (505)
|++|++++|.|.++|.. ...+.|+| .|+.+. .... ....++|+.+.. ..|.|.+++ .+
T Consensus 12 vkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~-~e 90 (126)
T d1etzb1 12 LQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD-TS 90 (126)
T ss_dssp ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GG
T ss_pred ECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc-cc
Confidence 57899999999998743 23567988 222221 1110 011245776632 259999999 99
Q ss_pred CCeEEEEEEE
Q psy14886 60 DPAMYQCRAK 69 (505)
Q Consensus 60 d~G~Y~C~~~ 69 (505)
|++.|.|...
T Consensus 91 DtAvYyCAr~ 100 (126)
T d1etzb1 91 DTATYHCARR 100 (126)
T ss_dssp GCEEEEEEEE
T ss_pred ccceEEEEEe
Confidence 9999999753
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=4.9e-05 Score=53.22 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=42.7
Q ss_pred CCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 4 QADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 4 G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
++.++|.|.+.+ +| ...|+|.+||..+..... .. ..++.|.. .+.|.|.... ......|+|.+.+..
T Consensus 20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~-~S~L~v~~~~-w~~~~~ytC~V~H~~ 92 (102)
T d1rzfl2 20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAA-SSYLSLTPEQ-WKSHRSYSCQVTHEG 92 (102)
T ss_dssp TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEE-EEEEEECHHH-HHHSSCEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEE-EEEEEECHHH-hCCCCEEEEEEEECC
Confidence 567899999998 45 578999999998874311 11 11223322 2456665443 223446999998754
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.55 E-value=0.00012 Score=51.92 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=46.2
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------c-CCCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------N-SETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~-~~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
+++|+++.|.|.++|.. .-.+.|+| .|+.+ . .... ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~-~eD 90 (127)
T d1n0xh1 12 KKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR-SAD 90 (127)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC-CCC
Confidence 57999999999999854 46689999 33322 1 1100 111346776642 258999999 999
Q ss_pred CeEEEEEE
Q psy14886 61 PAMYQCRA 68 (505)
Q Consensus 61 ~G~Y~C~~ 68 (505)
++.|.|.-
T Consensus 91 tAvYYCAR 98 (127)
T d1n0xh1 91 TAVYYCAR 98 (127)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEe
Confidence 99999964
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.55 E-value=0.00021 Score=51.11 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=45.9
Q ss_pred CceEEeeCCCeEEEEeecCCC-CCCeEEEEE--CCEE---ec---C-C------CcEEEe--eCC---CEEEcCCCCCCC
Q psy14886 96 ESETYAGEGGNVTIFCNPEAA-PKPKFVWKK--DGNI---IG---S-G------GRRKIF--ENG---NLLISPVSRDDS 154 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~--~g~~---~~---~-~------~~~~~~--~~~---~l~i~~v~~~d~ 154 (505)
+..+.+.+|++|+|.|..... ....+.|++ .|.. +. . . .+.... ..+ .|.|.++..+|+
T Consensus 7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 86 (114)
T d2ak4d1 7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS 86 (114)
T ss_dssp CCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence 356779999999999985433 344689988 2221 10 0 0 111111 111 499999999999
Q ss_pred EEEEEEEEcCCC
Q psy14886 155 GIYSCTATNVHG 166 (505)
Q Consensus 155 G~y~C~~~~~~g 166 (505)
|.|.|.+....+
T Consensus 87 g~YyCa~~~~~~ 98 (114)
T d2ak4d1 87 AVYFCALSGFYN 98 (114)
T ss_dssp EEEEEEEECSBT
T ss_pred CCceEeCCCCCC
Confidence 999998875543
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.55 E-value=0.00027 Score=50.28 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=45.9
Q ss_pred ceEEeeCCCeEEEEeecCCCC---CCeEEEEEC--CEE---ec---------CCCcEEEeeC---CCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP---KPKFVWKKD--GNI---IG---------SGGRRKIFEN---GNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p---~~~i~W~~~--g~~---~~---------~~~~~~~~~~---~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|++|+|.|...+.. ...+.|++. |+. +. ...++..... ..|.|.+++.+|+|.
T Consensus 8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~ 87 (112)
T d1lgva1 8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEAD 87 (112)
T ss_dssp SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEE
Confidence 457799999999999976542 236899982 221 10 1122222222 249999999999999
Q ss_pred EEEEEEcC
Q psy14886 157 YSCTATNV 164 (505)
Q Consensus 157 y~C~~~~~ 164 (505)
|.|.+.+.
T Consensus 88 YyCa~~~~ 95 (112)
T d1lgva1 88 YYCSSYDG 95 (112)
T ss_dssp EEEEEECS
T ss_pred EEEeeecC
Confidence 99988654
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.54 E-value=0.00025 Score=50.40 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=43.8
Q ss_pred ceEEeeCCCeEEEEeecCCC-----CCCeEEEEE--CCEE---e---------cCCCcEEEeeCC---CEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-----PKPKFVWKK--DGNI---I---------GSGGRRKIFENG---NLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-----p~~~i~W~~--~g~~---~---------~~~~~~~~~~~~---~l~i~~v~~~d~ 154 (505)
..+.+.+|++|+|.|...+. ....+.|++ .|+. + ....++.....+ .|.|.+++.+|+
T Consensus 10 ~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds 89 (113)
T d1n4xl_ 10 LYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL 89 (113)
T ss_dssp SEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGC
T ss_pred CEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccC
Confidence 45678999999999986432 224689987 2221 1 011233322222 599999999999
Q ss_pred EEEEEEEE
Q psy14886 155 GIYSCTAT 162 (505)
Q Consensus 155 G~y~C~~~ 162 (505)
|.|.|...
T Consensus 90 avYyCa~~ 97 (113)
T d1n4xl_ 90 GIYYCFQG 97 (113)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999654
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.54 E-value=8e-05 Score=52.73 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEECc------C-CCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELLN------S-ETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l~------~-~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. ...+.|+| .|+.+. . ... ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 ~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~-~eD 90 (121)
T d1j05b_ 12 VEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT-SED 90 (121)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC-GGG
T ss_pred ECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC-cCc
Confidence 57899999999998754 56789998 333221 1 100 011245776631 249999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d1j05b_ 91 TAVYYCAPF 99 (121)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEeEee
Confidence 999999754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.54 E-value=3e-05 Score=54.85 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=43.4
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEe---c-C--------CCcEEEeeC---CCEEEcCCCCCCCEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNII---G-S--------GGRRKIFEN---GNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~---~-~--------~~~~~~~~~---~~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+.+|++|+|.|.........+.|++ .|+.. . . ..++..... ..|.|.+++.+|+|.|.|.
T Consensus 10 s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa 89 (107)
T d3cx5k1 10 SLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ 89 (107)
T ss_dssp TCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence 3557889999999987665555799997 23221 0 0 111111111 2599999999999999997
Q ss_pred EE
Q psy14886 161 AT 162 (505)
Q Consensus 161 ~~ 162 (505)
+.
T Consensus 90 ~~ 91 (107)
T d3cx5k1 90 HH 91 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=4.1e-05 Score=54.37 Aligned_cols=69 Identities=19% Similarity=0.354 Sum_probs=45.2
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCC--------CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLP--------LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~--------~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
..|+.++|.|.+.+ +| ...|+|++||+.+...... ....+.|.. .+.|.|..-. ......|+|.+.+.
T Consensus 18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~-~S~L~v~~~~-w~~g~~ytC~V~H~ 95 (108)
T d1ow0a2 18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAV-TSILRVAAED-WKKGDTFSCMVGHE 95 (108)
T ss_dssp TSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEE-EEEEEEEHHH-HHHTCCEEEEEECT
T ss_pred ccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEE-EEEEEEcHHH-hCCCCEEEEEEEeC
Confidence 45788999999988 45 5799999999988643210 011223322 3567776544 33345899999875
Q ss_pred c
Q psy14886 72 L 72 (505)
Q Consensus 72 ~ 72 (505)
.
T Consensus 96 s 96 (108)
T d1ow0a2 96 A 96 (108)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.54 E-value=0.00033 Score=49.66 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=43.1
Q ss_pred ceEEeeCCCeEEEEeecCCC-----CCCeEEEEEC--CEEe---c---------CCCcEEEeeCC---CEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-----PKPKFVWKKD--GNII---G---------SGGRRKIFENG---NLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-----p~~~i~W~~~--g~~~---~---------~~~~~~~~~~~---~l~i~~v~~~d~ 154 (505)
..+.+.+|++|+|.|...+. ....+.|++. |+.. . ...++.....+ .|.|.+++.+|+
T Consensus 9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDs 88 (112)
T d1ncwl1 9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDL 88 (112)
T ss_dssp SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcC
Confidence 55778999999999985432 2236889872 2221 0 11233222221 499999999999
Q ss_pred EEEEEEEE
Q psy14886 155 GIYSCTAT 162 (505)
Q Consensus 155 G~y~C~~~ 162 (505)
|.|.|...
T Consensus 89 AvYYC~~~ 96 (112)
T d1ncwl1 89 GVYYCWQG 96 (112)
T ss_dssp EEEEEEEC
T ss_pred EeEEEEcC
Confidence 99999553
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.53 E-value=0.00012 Score=51.65 Aligned_cols=68 Identities=25% Similarity=0.446 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC-CC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE-TL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~-~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+ ... .. ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~-~eD 90 (121)
T d1ol0a_ 12 VQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLR-AED 90 (121)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecc-ccc
Confidence 57999999999998754 45689998 33322 111 00 112345776632 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d1ol0a_ 91 TAVYYCARE 99 (121)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEEEe
Confidence 999999754
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.53 E-value=0.00054 Score=48.76 Aligned_cols=69 Identities=28% Similarity=0.449 Sum_probs=45.3
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEEC--CE-Ee---c--C-----CCcEEEee-----CCCEEEcCCCCCCCEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GN-II---G--S-----GGRRKIFE-----NGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~-~~---~--~-----~~~~~~~~-----~~~l~i~~v~~~d~G~y~ 158 (505)
..+.+.+|++++|.|..... ...+.|++. +. +. . . ........ ...|.|.+++.+|+|.|.
T Consensus 9 ~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (113)
T d1h5ba_ 9 SALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYF 87 (113)
T ss_dssp SEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEE
T ss_pred CEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEE
Confidence 45678999999999997653 347999982 22 11 0 0 00000100 014999999999999999
Q ss_pred EEEEcCCC
Q psy14886 159 CTATNVHG 166 (505)
Q Consensus 159 C~~~~~~g 166 (505)
|.+....+
T Consensus 88 Ca~~~~~~ 95 (113)
T d1h5ba_ 88 CAAEASSG 95 (113)
T ss_dssp EEEECSSS
T ss_pred EEecCCCC
Confidence 99875443
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.53 E-value=9.1e-05 Score=52.50 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=46.5
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cC-CCC---CCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NS-ETL---PLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~-~~~---~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. .-.+.|+| .|+.+ .. ... ....++|+.+.. ..|.|.+++ .+|
T Consensus 12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~-~eD 90 (126)
T d1dfbh1 12 VQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLR-AED 90 (126)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeec-cCc
Confidence 58999999999999854 45789999 23221 11 100 011346776632 259999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 tavYYCAr~ 99 (126)
T d1dfbh1 91 MALYYCVKG 99 (126)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEEec
Confidence 999999754
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.53 E-value=0.00022 Score=50.67 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=46.1
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CEE---ec---------CCCcEEEeeCC---CEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GNI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y 157 (505)
+.+.+.+|++++|.|...+.. ...+.|++. ++. +. ...++....++ .|.|.+++.+|+|.|
T Consensus 8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y 87 (111)
T d1rzfl1 8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (111)
T ss_dssp SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence 357899999999999876542 346999972 211 10 11233332222 499999999999999
Q ss_pred EEEEEcC
Q psy14886 158 SCTATNV 164 (505)
Q Consensus 158 ~C~~~~~ 164 (505)
.|.+...
T Consensus 88 yCA~~~~ 94 (111)
T d1rzfl1 88 YCGTWDS 94 (111)
T ss_dssp EEEEEET
T ss_pred EEeecCC
Confidence 9987643
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.53 E-value=5.2e-05 Score=54.27 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=42.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECc-----CCCC---CCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLN-----SETL---PLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~-----~~~~---~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
+++|++++|.|.... ....+.|||. |+.+. .+.. ......++... ..+|.|.+++ .+|+|.|.
T Consensus 13 ~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~Dsa~Yy 90 (113)
T d1nfdb1 13 KEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE-LEDSAMYF 90 (113)
T ss_dssp EETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC-GGGCEEEC
T ss_pred EeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC-cCCceeEE
Confidence 368999999998653 3467999993 21110 0000 00012233221 2479999999 99999999
Q ss_pred EEEEc
Q psy14886 66 CRAKN 70 (505)
Q Consensus 66 C~~~~ 70 (505)
|.+..
T Consensus 91 Ca~~~ 95 (113)
T d1nfdb1 91 CASSL 95 (113)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 98764
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.53 E-value=0.00014 Score=51.51 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=46.8
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEE--CCEEC------cCC-C---CCCCCCCcEEEEC------CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFR--NGELL------NSE-T---LPLEDQDRYFIQD------NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~--~~~~l------~~~-~---~~~~~~~~~~~~~------~~L~i~~~~~~~d 60 (505)
|++|++++|.|.++|.. ...+.|+| .|+.+ ... . .....++|+.+.. -.|+|.+++ .+|
T Consensus 12 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~-~eD 90 (125)
T d1op3h1 12 VKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR-VED 90 (125)
T ss_dssp EETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC-GGG
T ss_pred ECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccC-Ccc
Confidence 57899999999998754 46789999 23222 111 0 1112356777632 258999999 999
Q ss_pred CeEEEEEEE
Q psy14886 61 PAMYQCRAK 69 (505)
Q Consensus 61 ~G~Y~C~~~ 69 (505)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (125)
T d1op3h1 91 TAIYYCARK 99 (125)
T ss_dssp CEEEEEEEE
T ss_pred ceeEeEeec
Confidence 999999754
|