Psyllid ID: psy14930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MSFNNNNKNIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Secondary Structure (PSIPRED)
ccccccccccHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccEccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSFNNNNKNIWFTMLQEKLSSYLLAlrpwslsaslIPTLLGCALAvklpiekgqFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIdtsrrsddrtLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGlsssflysgclglkytaLGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAIlhsnntrdlesdrQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSiekqfrcpdkihlvpKLTAKLNLYFGFLYVVAVTLA
Flexible Loop (DISEMBL)
msfnnnnkNIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSnntrdlesdrQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Low Complexity Region (SEG)
MSFNNNNKNIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Disordered region (IsUnstruct)
********NIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT**
Disordered Region (DISOPRED)
*******************SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Disordered Region (DISEMBL)
MSFNNNNKNIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Disordered Region (DISPRO)
***************QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFNNNNKNIWFTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q9V3R8	359	UbiA prenyltransferase do	yes	N/A	0.938	0.805	0.625	1e-104
Q5ZKS8	333	UbiA prenyltransferase do	yes	N/A	0.935	0.864	0.508	4e-76
Q9Y5Z9	338	UbiA prenyltransferase do	yes	N/A	0.935	0.852	0.505	1e-75
Q9DC60	336	UbiA prenyltransferase do	yes	N/A	0.935	0.857	0.505	4e-75
Q28HR4	345	UbiA prenyltransferase do	yes	N/A	0.944	0.843	0.5	7e-75
D3ZG27	338	UbiA prenyltransferase do	yes	N/A	0.935	0.852	0.501	3e-74
D2HKB0	337	UbiA prenyltransferase do	yes	N/A	0.935	0.854	0.501	5e-74
Q54K99	330	UbiA prenyltransferase do	yes	N/A	0.902	0.842	0.334	6e-35
P39582	311	Probable 1,4-dihydroxy-2-	yes	N/A	0.931	0.922	0.288	3e-21
P44739	308	1,4-dihydroxy-2-naphthoat	yes	N/A	0.811	0.811	0.289	1e-13

>sp|Q9V3R8|UBIA1_DROME UbiA prenyltransferase domain-containing protein 1 homolog OS=Drosophila melanogaster GN=heix PE=2 SV=1

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/291 (62%), Positives = 235/291 (80%), Gaps = 2/291 (0%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           KL +YLLALRPWSLSASL+PTLLG ALA +    + +FS    F+T  TV++VHCAGNVV
Sbjct: 60  KLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAE-EFSLATFFLTAFTVVTVHCAGNVV 118

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTY+D++ GID  +++DDRTLVDHIL++ E+VSLG +LY+    GF+LL+ +SPAKMEHL
Sbjct: 119 NTYFDFIKGID-KQKADDRTLVDHILTKDEVVSLGAILYMAGCGGFVLLAVLSPAKMEHL 177

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A ++F GLSSSFLY+G +G KY ALGD++IL++FGPI+VLFAFMSQTG  +W T+ YA+P
Sbjct: 178 ALIYFGGLSSSFLYTGGIGFKYIALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIP 237

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRD ++DR+ GIVT+AIL+G++ SHV YA LLF PY +F ++G+ +S
Sbjct: 238 LALNTEAILHSNNTRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYS 297

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
            ++LLPLVTL  AF IEK+FR    +HLVP+ TAKLN +FG LYVVA   A
Sbjct: 298 LWFLLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCA 348

Prenyltransferase.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|Q5ZKS8|UBIA1_CHICK UbiA prenyltransferase domain-containing protein 1 OS=Gallus gallus GN=UBIAD1 PE=2 SV=1

 Score =  285 bits (728), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 149/293 (50%), Positives = 202/293 (68%), Gaps = 5/293 (1%)

Query: 16  QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
           ++K ++Y+LALRPWS SASL P  LG ALA +    +G     +L  + + V++VH AGN
Sbjct: 38  RQKCAAYVLALRPWSFSASLTPVALGSALAYR---AEGALDPRLLVGSAVAVLAVHGAGN 94

Query: 76  VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
           +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY V       L  +S  K+E
Sbjct: 95  LVNTYYDFSKGID-HKKSDDRTLVDQILEPQDVVRFGVFLYTVGCICAAGLYAVSTLKLE 153

Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
           HLA V+F GLSSSFLY+G +G KY ALGDV+IL+ FGP+ V+FA   Q G    + + YA
Sbjct: 154 HLALVYFGGLSSSFLYTGGIGFKYVALGDVVILITFGPLAVMFAHAVQVGYLSVSPLLYA 213

Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
           +P+AL+TEAILHSNNTRD+ESD+Q GIVT+AI++G ++S+V Y  LLF+PY++F V    
Sbjct: 214 VPLALSTEAILHSNNTRDMESDQQAGIVTLAIIIGPAFSYVLYTVLLFLPYLIFCVLATR 273

Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
           ++    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct: 274 YTISMALPLLTIPMAFSLERQFRS-QNFNKIPQRTAKLNLLLGLFYVFGIMLA 325

Prenyltransferase that mediates the formation of menaquinone-4 (MK-4), a vitamin K2 isoform. Mediates the conversion of phylloquinone (PK) into menaquinone-4 (MK-4), probably by cleaving the side chain of phylloquinone (PK) to release 2-methyl-1,4-naphthoquinone (menadione; K3) and then prenylating it with geranylgeranyl pyrophosphate (GGPP) to form MK-4.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9Y5Z9|UBIA1_HUMAN UbiA prenyltransferase domain-containing protein 1 OS=Homo sapiens GN=UBIAD1 PE=1 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/293 (50%), Positives = 201/293 (68%), Gaps = 5/293 (1%)

Query: 16  QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
           ++K +SY+LALRPWS SASL P  LG ALA +     G     +L    + V++VH AGN
Sbjct: 43  RQKCASYVLALRPWSFSASLTPVALGSALAYR---SHGVLDPRLLVGCAVAVLAVHGAGN 99

Query: 76  VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
           +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+SP K+E
Sbjct: 100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSPLKLE 158

Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
           HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct: 159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLIILITFGPLAVMFAYAIQVGSLAIFPLVYA 218

Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
           +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G ++S++ Y  LLF+PY+VF +   +
Sbjct: 219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYILYNTLLFLPYLVFSILATH 278

Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
            +    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct: 279 CTISLALPLLTIPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 330

Prenyltransferase that mediates the formation of menaquinone-4 (MK-4), a vitamin K2 isoform present at high concentrations in the brain, kidney and pancreas. Mediates the conversion of phylloquinone (PK) into menaquinone-4 (MK-4), probably by cleaving the side chain of phylloquinone (PK) to release 2-methyl-1,4-naphthoquinone (menadione; K3) and then prenylating it with geranylgeranyl pyrophosphate (GGPP) to form MK-4.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9DC60|UBIA1_MOUSE UbiA prenyltransferase domain-containing protein 1 OS=Mus musculus GN=Ubiad1 PE=2 SV=1

 Score =  281 bits (720), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/293 (50%), Positives = 200/293 (68%), Gaps = 5/293 (1%)

Query: 16  QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
           + K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct: 41  RHKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLLGCAVAVLAVHGAGN 97

Query: 76  VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
           +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+S  K+E
Sbjct: 98  LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSALKLE 156

Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
           HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct: 157 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAIFPLIYA 216

Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
           +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G ++S+V Y  LLF+PY++F +   +
Sbjct: 217 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYVLYNTLLFVPYLIFTILATH 276

Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
            S    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct: 277 CSISLALPLLTIPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 328

Prenyltransferase that mediates the formation of menaquinone-4 (MK-4), a vitamin K2 isoform present at high concentrations in the brain, kidney and pancreas. Mediates the conversion of phylloquinone (PK) into menaquinone-4 (MK-4), probably by cleaving the side chain of phylloquinone (PK) to release 2-methyl-1,4-naphthoquinone (menadione; K3) and then prenylating it with geranylgeranyl pyrophosphate (GGPP) to form MK-4.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q28HR4|UBIA1_XENTR UbiA prenyltransferase domain-containing protein 1 OS=Xenopus tropicalis GN=ubiad1 PE=2 SV=1

 Score =  280 bits (717), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 148/296 (50%), Positives = 203/296 (68%), Gaps = 5/296 (1%)

Query: 13  TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
           T  ++K ++Y+LALRPWS SASLIP  LG A+A +     G    ++  V  + V++VH 
Sbjct: 49  TSFKQKCATYVLALRPWSFSASLIPVALGTAIAYR---SGGSLDLLLFVVCAVAVLAVHG 105

Query: 73  AGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA 132
           AGN+VNTYYD+  GID  ++SDDRTLVDHIL   ++V  GV LY +       L +IS  
Sbjct: 106 AGNLVNTYYDFSKGID-HKKSDDRTLVDHILEPQDVVRFGVFLYTLGCLCAACLYFISKL 164

Query: 133 KMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATI 192
           K+EHLA ++F GLSSSFLY+G +G KY ALGD++IL+ FGP+ V+FA   Q G      +
Sbjct: 165 KLEHLALIYFGGLSSSFLYTGGIGFKYVALGDLVILITFGPLAVMFAHAVQVGYLAVTPL 224

Query: 193 CYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVW 252
            YA+P+AL+TEAILHSNNTRD+ESDRQ GIVT+AIL+G  +S++ Y  L+F+PY++F + 
Sbjct: 225 LYAVPLALSTEAILHSNNTRDMESDRQAGIVTLAILVGPMFSYMLYNLLVFLPYLIFSIL 284

Query: 253 GMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              ++    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct: 285 ATRYTISMALPLLTIPLAFSLERQFRS-QNFNKIPQRTAKLNLLVGLFYVFGIVLA 339

Prenyltransferase that mediates the formation of menaquinone-4 (MK-4), a vitamin K2 isoform. Mediates the conversion of phylloquinone (PK) into menaquinone-4 (MK-4), probably by cleaving the side chain of phylloquinone (PK) to release 2-methyl-1,4-naphthoquinone (menadione; K3) and then prenylating it with geranylgeranyl pyrophosphate (GGPP) to form MK-4.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|D3ZG27|UBIA1_RAT UbiA prenyltransferase domain-containing protein 1 OS=Rattus norvegicus GN=Ubiad1 PE=3 SV=1

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 147/293 (50%), Positives = 199/293 (67%), Gaps = 5/293 (1%)

Query: 16  QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
           ++K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct: 43  RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLLGCAVAVLAVHGAGN 99

Query: 76  VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
           +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+S  K+E
Sbjct: 100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAAYLYYLSTLKLE 158

Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
           HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct: 159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAIFPLVYA 218

Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
           +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G + S++ Y  LLF+PY++F +   +
Sbjct: 219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTLSYILYNTLLFLPYLIFTILATH 278

Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
            S    LPL+T   AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct: 279 CSISLALPLLTSPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 330

Prenyltransferase that mediates the formation of menaquinone-4 (MK-4), a vitamin K2 isoform present at high concentrations in the brain, kidney and pancreas. Mediates the conversion of phylloquinone (PK) into menaquinone-4 (MK-4), probably by cleaving the side chain of phylloquinone (PK) to release 2-methyl-1,4-naphthoquinone (menadione; K3) and then prenylating it with geranylgeranyl pyrophosphate (GGPP) to form MK-4.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|D2HKB0|UBIA1_AILME UbiA prenyltransferase domain-containing protein 1 OS=Ailuropoda melanoleuca GN=UBIAD1 PE=3 SV=1

 Score =  278 bits (710), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 147/293 (50%), Positives = 200/293 (68%), Gaps = 5/293 (1%)

Query: 16  QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
           ++K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct: 42  RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLVGCAVAVLAVHGAGN 98

Query: 76  VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
           +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L  +SP K+E
Sbjct: 99  LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVLFGVFLYTLGCVCAACLYCLSPLKLE 157

Query: 136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
           HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct: 158 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAVFPLVYA 217

Query: 196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
           +P+AL+TEA+LHSNNTRD+ESDR+ GIVT+AIL+G + S+V Y  LLF+PY++F +   +
Sbjct: 218 IPLALSTEAVLHSNNTRDMESDREAGIVTLAILIGPTLSYVLYNTLLFLPYLIFSILATH 277

Query: 256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
            S    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct: 278 CSISLALPLLTVPMAFSLERQFRS-QTFNKLPQRTAKLNLLLGLFYVFGIILA 329

Prenyltransferase that mediates the formation of menaquinone-4 (MK-4), a vitamin K2 isoform present at high concentrations in the brain, kidney and pancreas. Mediates the conversion of phylloquinone (PK) into menaquinone-4 (MK-4), probably by cleaving the side chain of phylloquinone (PK) to release 2-methyl-1,4-naphthoquinone (menadione; K3) and then prenylating it with geranylgeranyl pyrophosphate (GGPP) to form MK-4.

Ailuropoda melanoleuca (taxid: 9646)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q54K99|UBIA1_DICDI UbiA prenyltransferase domain-containing protein 1 OS=Dictyostelium discoideum GN=ubiad1 PE=3 SV=1

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 27/305 (8%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           KL   +LA RPWSL+ S+   L+G ALA +   E  +F  I+L + L+  +S+   GNVV
Sbjct: 37  KLMGIILATRPWSLTISVTSVLVGSALAFR---EIREFDSIMLSIILVGAVSLQALGNVV 93

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSL------------GVMLYLVSSAGFIL 125
           N++YD   G DT  +S DRT+ D  L+E  +++L            G+M++ + +   I 
Sbjct: 94  NSFYDCKNGNDTKEKSADRTMFDFGLTEGNIINLIWYLLIQCAICLGLMIFRMDNIKCI- 152

Query: 126 LSYISPAKMEHLAAVFFCGLSSSFLYSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQT 184
                   +E++  +   G   +  Y+   +GLKY  LGD+ I + FGPI V  AF+SQT
Sbjct: 153 --------VENILPLGAFGFILNISYTAAPIGLKYIGLGDLTIFLCFGPILVQSAFISQT 204

Query: 185 GRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFI 244
              +     Y++P+AL   A+LH NNTRD+++D + G +T+A  LG    +  YA L   
Sbjct: 205 HYHDSLAYFYSIPLALTIVAVLHVNNTRDIKADTEAGSITLASKLGFKNCYYIYAGLYLF 264

Query: 245 PYIVFVVWGMNHSYYYL-LPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVV 303
            YI      ++   Y L LPL+ +    S+  QF+   K+  + + T +L+ +FG L  +
Sbjct: 265 AYIYLFKLSLDIDKYILNLPLILIPKIISLINQFK-NKKLEDLTEKTGQLSFFFGGLNAI 323

Query: 304 AVTLA 308
            V L+
Sbjct: 324 GVLLS 328

Dictyostelium discoideum (taxid: 44689)

>sp|P39582|MENA_BACSU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Bacillus subtilis (strain 168) GN=menA PE=3 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 149/309 (48%), Gaps = 22/309 (7%)

Query: 4   NNNNKNIWFTMLQ-EKLSSYLLAL-RPWSLSASLIPTLLGCALA---VKLPIEKGQFSWI 58
           N  NK    T  Q E +   L  L RP +L+AS +P LLG  LA   VK+ +       +
Sbjct: 2   NQTNKGEGQTAPQKESMGQILWQLTRPHTLTASFVPVLLGTVLAMFYVKVDL-------L 54

Query: 59  ILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSD-DRTLVDHILSESELVSLGVMLYL 117
           +    L + + +  A N+ N YYD+  G+DT+        +V H +    ++ L +  Y 
Sbjct: 55  LFLAMLFSCLWIQIATNLFNEYYDFKRGLDTAESVGIGGAIVRHGMKPKTILQLALASYG 114

Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGC-LGLKYTALGDVLILMIFGPITV 176
           ++    +L  YI  +    LA +   G++  +LY+G  L + YT  G++   +  G + V
Sbjct: 115 IA---ILLGVYICASSSWWLALIGLVGMAIGYLYTGGPLPIAYTPFGELFSGICMGSVFV 171

Query: 177 LFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV 236
           L +F  QT +    +I  ++P+A+   AI  SNN RD+E D++ G  T+AIL+G   +  
Sbjct: 172 LISFFIQTDKINMQSILISIPIAILVGAINLSNNIRDIEEDKKGGRKTLAILMGHKGAVT 231

Query: 237 YYAFLLFIPYI---VFVVWGMNHSYYYLLPLVTLKSAFSIEK--QFRCPDKIHLVPKLTA 291
             A    + YI     V+ G    + +++ L   K   +++   Q   P  + +  K TA
Sbjct: 232 LLAASFAVAYIWVVGLVITGAASPWLFVVFLSVPKPVQAVKGFVQNEMPMNMIVAMKSTA 291

Query: 292 KLNLYFGFL 300
           + N +FGFL
Sbjct: 292 QTNTFFGFL 300

Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side chain, and a quinol-to-quinone oxidation, which is thought to be spontaneous.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|P44739|MENA_HAEIN 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=menA PE=3 SV=1

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 131/276 (47%), Gaps = 26/276 (9%)

Query: 14  MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCA 73
           M+ EKL  +    RP +L  +L     G AL      +   F+ +++ + LLT I +   
Sbjct: 6   MINEKLKMWWETARPKTLPLALASIFTGSALGYWANPQG--FNGLVMVLCLLTTILLQVL 63

Query: 74  GNVVNTYYDYVLGIDTSRRSDD-RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA 132
            N  N Y D+  G DT  R    R +    +S  EL   G++L +++S  F+  S++   
Sbjct: 64  SNFANDYGDHQKGSDTEERIGPLRGIQKGAISAKEL-KWGLILMVMAS--FLSGSFLIGI 120

Query: 133 KMEHLAAVF-FCGLS-----SSFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQ 183
             E+L+ +F F GL      ++  Y+  +G+K   Y  LGD+ +L+ FG + V   +  Q
Sbjct: 121 AYENLSDLFAFAGLGILAIVAAITYT--VGVKPYGYMGLGDISVLVFFGLLGVGGTYYLQ 178

Query: 184 TGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLF 243
           T   +   I  A+   L   A+L+ NN RD+E D + G  T+A+ LG     VY+  LL 
Sbjct: 179 THSIDSHIILPAIGSGLLASAVLNINNLRDIEQDAKAGKNTLAVRLGAYKGRVYHCILLS 238

Query: 244 IP---YIVFVV-----WGMNHSYYYLLPLVTLKSAF 271
           +    Y+ F V     W  N+ +   +PL+   + F
Sbjct: 239 VAALCYLAFAVATAISW-TNYLFVLAMPLLAKHAIF 273

Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side chain, and a quinol-to-quinone oxidation, which is thought to be spontaneous.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
91088573	326	PREDICTED: similar to 1,4-dihydroxy-2-na	0.931	0.880	0.686	1e-107
242011958	296	1,4-dihydroxy-2-naphthoate octaprenyltra	0.925	0.962	0.667	1e-106
158297337	305	AGAP007897-PA [Anopheles gambiae str. PE	0.922	0.931	0.651	1e-103
312376185	358	hypothetical protein AND_13027 [Anophele	0.925	0.796	0.651	1e-103
307188156	325	UbiA prenyltransferase domain-containing	0.935	0.886	0.658	1e-103
383848660	331	PREDICTED: ubiA prenyltransferase domain	0.935	0.870	0.665	1e-103
380015730	332	PREDICTED: ubiA prenyltransferase domain	0.990	0.918	0.635	1e-102
340721694	329	PREDICTED: ubiA prenyltransferase domain	0.990	0.927	0.635	1e-102
66562776	332	PREDICTED: ubiA prenyltransferase domain	0.990	0.918	0.635	1e-102
350406829	332	PREDICTED: ubiA prenyltransferase domain	0.990	0.918	0.635	1e-102

>gi|91088573|ref|XP_973123.1| PREDICTED: similar to 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Tribolium castaneum] gi|270012242|gb|EFA08690.1| hypothetical protein TcasGA2_TC006361 [Tribolium castaneum]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/290 (68%), Positives = 240/290 (82%), Gaps = 3/290 (1%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           KLSSY+LALRPWSLSASL+PTLLG  +A K P     F++  L +T+ TV+SVH AGNVV
Sbjct: 30  KLSSYVLALRPWSLSASLMPTLLGSTIAYKYP-GVTDFNYATLLLTIFTVVSVHGAGNVV 88

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTY+DYV GID +R+SDDR LVDHIL++ E+VSLG +LY     GFILL+ +SPAKMEHL
Sbjct: 89  NTYFDYVKGID-NRKSDDRILVDHILTKDEVVSLGALLYFAGCVGFILLAALSPAKMEHL 147

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A V+F GLSSSFLY+G +G KY ALGDVLIL++FGPI+VLFAFMSQTGR EWATI YA+P
Sbjct: 148 ALVYFGGLSSSFLYTGGIGFKYIALGDVLILILFGPISVLFAFMSQTGRVEWATIYYAIP 207

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRD ESD++VGIVT+AI++G + SHV YAFLLF PYI+F+V  + +S
Sbjct: 208 LALNTEAILHSNNTRDSESDKKVGIVTLAIIIGHTASHVLYAFLLFTPYIMFMVASLKYS 267

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307
            +++LPLVTL SAF IEKQFR  D IH VPK TAKLNL+FG LYV+A +L
Sbjct: 268 KWFMLPLVTLPSAFKIEKQFRSND-IHSVPKKTAKLNLFFGVLYVLACSL 316

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011958|ref|XP_002426710.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative [Pediculus humanus corporis] gi|212510881|gb|EEB13972.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative [Pediculus humanus corporis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/289 (66%), Positives = 239/289 (82%), Gaps = 4/289 (1%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           KLSSY+LALRPWSLSASLIPTLLG ALA K      +F W+IL VT+ T++SVH AGN+V
Sbjct: 2   KLSSYVLALRPWSLSASLIPTLLGTALAYK---STSEFGWLILLVTIFTLVSVHGAGNLV 58

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTY+DYV GID  R+SDDRTLVDH+LS+ E+V+ G  LY    AGFI L+ +SPAKMEHL
Sbjct: 59  NTYFDYVKGID-GRKSDDRTLVDHLLSQDEVVTFGAFLYAAGCAGFIALAALSPAKMEHL 117

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A ++F GLSSSFLY+G +GLKY ALGDV++L+IFGP++VLFAFM+QTG+ EW+ I YA+P
Sbjct: 118 ALIYFGGLSSSFLYTGGIGLKYIALGDVIVLVIFGPLSVLFAFMAQTGKVEWSCIYYAIP 177

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRDLESD++ GIVT+AIL+G + S+V YA LLF PYI+FV+  + +S
Sbjct: 178 LALNTEAILHSNNTRDLESDKEAGIVTLAILIGFTASYVLYALLLFTPYILFVIVSLRYS 237

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT 306
            ++LLPL+TL SAF IEKQFRC + I  VP+ TAKLNLYFG LYV+AV+
Sbjct: 238 LWFLLPLITLPSAFKIEKQFRCHNTIQKVPQRTAKLNLYFGCLYVIAVS 286

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297337|ref|XP_317591.3| AGAP007897-PA [Anopheles gambiae str. PEST] gi|157015147|gb|EAA12830.3| AGAP007897-PA [Anopheles gambiae str. PEST]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/287 (65%), Positives = 234/287 (81%), Gaps = 3/287 (1%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           K  +YL ALRPWSLSASLIPTLLG ALA +   E    S+     T+LTV++VHCAGNVV
Sbjct: 9   KFKTYLSALRPWSLSASLIPTLLGTALACESGYE--HLSFFTFLCTVLTVVTVHCAGNVV 66

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTYYD+V GID  R++DDRTLVDHILS+ E+V+LGV+LY     GF+ L Y+SPA++EHL
Sbjct: 67  NTYYDFVKGID-DRKADDRTLVDHILSQDEVVTLGVLLYGAGCLGFVCLVYLSPARLEHL 125

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A VFF GLSSSFLY+G  GLKY ALGDVL+L+IFGPI+VLF++M+QTGR+EWATI YA+P
Sbjct: 126 ALVFFGGLSSSFLYTGGFGLKYIALGDVLVLVIFGPISVLFSYMAQTGRYEWATIFYAIP 185

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRD ESD++VGIVT+AIL+G++ S++ Y  LLF PY++FVV GM +S
Sbjct: 186 LALNTEAILHSNNTRDAESDKRVGIVTLAILIGRTGSYILYGVLLFTPYVIFVVLGMKYS 245

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVA 304
             +LLP+VT K AF++E+QFR    + +VP+ TAKLNL+FG LYVVA
Sbjct: 246 ALFLLPMVTFKQAFALERQFRNESTMQMVPRQTAKLNLFFGILYVVA 292

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312376185|gb|EFR23351.1| hypothetical protein AND_13027 [Anopheles darlingi]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/287 (65%), Positives = 238/287 (82%), Gaps = 2/287 (0%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           K+ +YL ALRPWSLSASL+PT+LG  +A+++   + +F+++    T+ TVI+VHCAGNVV
Sbjct: 61  KIKTYLSALRPWSLSASLVPTMLGTTIALRVHGFQ-EFNFLTFICTVFTVITVHCAGNVV 119

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTY+D+V GID +R+SDDRTLVDHILS+ E+V+LGV+LY    AGF+ L Y+SPAK+EHL
Sbjct: 120 NTYFDFVKGID-NRKSDDRTLVDHILSKDEVVTLGVLLYCAGCAGFVCLVYLSPAKLEHL 178

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A V+F GLSSSFLY+G +GLKY ALGDVLIL+IFGPI+VLF++M+QTG  EW TI YA+P
Sbjct: 179 ALVYFGGLSSSFLYTGGIGLKYIALGDVLILIIFGPISVLFSYMAQTGYVEWMTIFYAIP 238

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRD ESD++VGIVT+AIL+G++ S+V YA LLF PY++FVV GM +S
Sbjct: 239 LALNTEAILHSNNTRDAESDKRVGIVTLAILIGKTCSYVLYALLLFTPYVIFVVLGMKYS 298

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVA 304
             +LLP+VTLK AF IEKQFR    +  VP+ TAKLNL+FG LYVVA
Sbjct: 299 TLFLLPMVTLKQAFDIEKQFRNESTLQNVPRQTAKLNLFFGILYVVA 345

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188156|gb|EFN72988.1| UbiA prenyltransferase domain-containing protein 1-like protein [Camponotus floridanus]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/290 (65%), Positives = 233/290 (80%), Gaps = 2/290 (0%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           KLSSY LA+RPWSLSASL+PTLLG ALA +L      FSWI L V + TV+ VH AGNVV
Sbjct: 36  KLSSYFLAVRPWSLSASLMPTLLGSALAYRL-TGLASFSWISLIVIVFTVLCVHGAGNVV 94

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTY+DY  G+D SR+SDDR LVDH+LS+ ELVSLG +LY V S GF+LL+ ISPAKMEHL
Sbjct: 95  NTYFDYEKGVD-SRQSDDRILVDHLLSKDELVSLGALLYTVGSLGFVLLTAISPAKMEHL 153

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A V+F GLSSSFLY+G +G KY ALGDVL+L+IFGP++VLFAFM+QTG  E  TI YA+P
Sbjct: 154 ALVYFAGLSSSFLYTGSIGFKYIALGDVLVLIIFGPVSVLFAFMAQTGYGELQTIYYAVP 213

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRD+ESD++ GIVT+AIL+G + SHV YAFLLF PYI+ +V  + +S
Sbjct: 214 LALNTEAILHSNNTRDMESDKKAGIVTLAILIGHTTSHVLYAFLLFTPYIILIVLALKYS 273

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307
            ++LLP++TL +AF IEK FR P KI  VPK TA+LN++ G LYV+A  L
Sbjct: 274 IWFLLPVITLPTAFKIEKDFRNPYKIQNVPKRTARLNMFLGILYVIACLL 323

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848660|ref|XP_003699966.1| PREDICTED: ubiA prenyltransferase domain-containing protein 1 homolog [Megachile rotundata]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/290 (66%), Positives = 230/290 (79%), Gaps = 2/290 (0%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
           KLSSY LA+RPWSLSASL+PTLLG ALA +L      FSWI   +TL TV  VH AGNVV
Sbjct: 37  KLSSYFLAVRPWSLSASLMPTLLGSALAYRL-TGLANFSWISFILTLYTVFCVHGAGNVV 95

Query: 78  NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
           NTY+DY+ G+D SR+SDDR LVD +LS+ ELVSLG +LY     GF+LL+ ISPAKMEHL
Sbjct: 96  NTYFDYIKGVD-SRKSDDRILVDQLLSKDELVSLGALLYTAGCLGFVLLTTISPAKMEHL 154

Query: 138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
           A V+F GLSSSFLY+G +GLKY ALGDVLIL+IFGPI+VLFAFM+QTG  E  TI YA+P
Sbjct: 155 ALVYFGGLSSSFLYTGGIGLKYIALGDVLILVIFGPISVLFAFMAQTGYIELGTIYYAIP 214

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           +ALNTEAILHSNNTRDLESD++ GIVT+AIL+G + SHV YAFLLF PY+  VV  + +S
Sbjct: 215 LALNTEAILHSNNTRDLESDKKAGIVTLAILIGHTVSHVLYAFLLFTPYVTLVVLALRYS 274

Query: 258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307
            ++LLP++TL +AF IEKQFR P  I  VPK TAKLN++ G LYV+A  L
Sbjct: 275 VWFLLPVITLPTAFKIEKQFRSPHMIQSVPKQTAKLNMFLGILYVIACLL 324

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015730|ref|XP_003691849.1| PREDICTED: ubiA prenyltransferase domain-containing protein 1 homolog [Apis florea]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 236/310 (76%), Gaps = 5/310 (1%)

Query: 1   MSFNNNNKNIWFTMLQE---KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSW 57
           MS N N   I  + L     KLSSY LA+RPWSLSASL+PTLLG ALA +L      FSW
Sbjct: 18  MSNNTNCSPISSSTLNSPLMKLSSYFLAVRPWSLSASLMPTLLGSALAYRL-TSIANFSW 76

Query: 58  IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYL 117
           I   +T+ TV  VH AGNVVNTY+DY+ G+D SR+SDDR LVD +LS+ ELVSLG +LY 
Sbjct: 77  ISFILTVYTVFCVHGAGNVVNTYFDYIKGVD-SRKSDDRILVDQLLSKDELVSLGALLYT 135

Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVL 177
               GF+LL+ ISPAKMEHLA V+F GLSSSFLY+G +G KY ALGDVLIL+IFGPI+VL
Sbjct: 136 AGCLGFVLLTTISPAKMEHLALVYFGGLSSSFLYTGGIGFKYIALGDVLILVIFGPISVL 195

Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVY 237
           FAFM+QTG  E  TI YA+P+ALNTEAILHSNNTRDLESD++ GIVT+AIL+G + SHV 
Sbjct: 196 FAFMAQTGYIELGTIYYAIPLALNTEAILHSNNTRDLESDKRAGIVTLAILIGHTVSHVL 255

Query: 238 YAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYF 297
           YAFLLF PY+  VV  + +S ++LLP++TL +AF IEKQFR P  I  VPK TAKLN++ 
Sbjct: 256 YAFLLFTPYVTLVVLALRYSIWFLLPVITLPTAFKIEKQFRSPHMIQSVPKQTAKLNMFL 315

Query: 298 GFLYVVAVTL 307
           G LYV+A  L
Sbjct: 316 GILYVIACLL 325

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721694|ref|XP_003399251.1| PREDICTED: ubiA prenyltransferase domain-containing protein 1 homolog, partial [Bombus terrestris]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 236/310 (76%), Gaps = 5/310 (1%)

Query: 1   MSFNNNNKNIWFTMLQE---KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSW 57
           MS N N   I  + L     KLSSY LA+RPWSLSASL+PTLLG ALA +L      FSW
Sbjct: 15  MSKNANCSPITSSTLNSPLMKLSSYFLAVRPWSLSASLMPTLLGSALAYRL-TSTASFSW 73

Query: 58  IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYL 117
           I L +T+ TV  VH AGNVVNTY+DY+ G+D SR+SDDR LVD +LS+ ELVSLG +LY 
Sbjct: 74  ISLILTVYTVFCVHGAGNVVNTYFDYIKGVD-SRKSDDRILVDQLLSKDELVSLGAILYT 132

Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVL 177
               GF+LL+ ISPA+MEHLA V+F GLSSSFLY+G +G KY ALGDVLIL+IFGPI+VL
Sbjct: 133 AGCLGFVLLTTISPARMEHLALVYFGGLSSSFLYTGGIGFKYIALGDVLILVIFGPISVL 192

Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVY 237
           FAFM+QTG  E  TI YA+P+ALNTEAILHSNNTRDLESD++ GIVT+AIL+G + SHV 
Sbjct: 193 FAFMAQTGYIELGTIYYAIPLALNTEAILHSNNTRDLESDKKAGIVTLAILIGHTVSHVL 252

Query: 238 YAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYF 297
           YAFLLF PY+  VV  + +S ++LLP+ TL +AF IEKQFR P  I  VPK TAKLN++ 
Sbjct: 253 YAFLLFTPYVTLVVLALRYSIWFLLPVTTLPTAFKIEKQFRSPHMIQSVPKQTAKLNMFL 312

Query: 298 GFLYVVAVTL 307
           G LYV+A  L
Sbjct: 313 GILYVIACLL 322

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66562776|ref|XP_625148.1| PREDICTED: ubiA prenyltransferase domain-containing protein 1 homolog [Apis mellifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 236/310 (76%), Gaps = 5/310 (1%)

Query: 1   MSFNNNNKNIWFTMLQE---KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSW 57
           MS N N   I  + L     KLSSY LA+RPWSLSASL+PTLLG ALA +L      FSW
Sbjct: 18  MSNNTNCSPISSSTLNSPLMKLSSYFLAVRPWSLSASLMPTLLGSALAYRL-TNIANFSW 76

Query: 58  IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYL 117
           I   +T+ TV  VH AGNVVNTY+DY+ G+D SR+SDDR LVD +LS+ ELVSLG +LY 
Sbjct: 77  ISFILTVYTVFCVHGAGNVVNTYFDYIKGVD-SRKSDDRILVDQLLSKDELVSLGALLYT 135

Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVL 177
               GF+LL+ ISPAKMEHLA V+F GLSSSFLY+G +G KY ALGDVLIL+IFGPI+VL
Sbjct: 136 AGCLGFVLLTTISPAKMEHLALVYFGGLSSSFLYTGGIGFKYIALGDVLILVIFGPISVL 195

Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVY 237
           FAFM+QTG  E  TI YA+P+ALNTEAILHSNNTRDLESD++ GIVT+AIL+G + SHV 
Sbjct: 196 FAFMAQTGYIELGTIYYAIPLALNTEAILHSNNTRDLESDKRAGIVTLAILIGHTVSHVL 255

Query: 238 YAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYF 297
           YAFLLF PY+  VV  + +S ++LLP++TL +AF IEKQFR P  I  VPK TAKLN++ 
Sbjct: 256 YAFLLFTPYVTLVVLALRYSIWFLLPVITLPTAFKIEKQFRSPHMIQSVPKQTAKLNMFL 315

Query: 298 GFLYVVAVTL 307
           G LYV+A  L
Sbjct: 316 GILYVIACLL 325

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406829|ref|XP_003487899.1| PREDICTED: ubiA prenyltransferase domain-containing protein 1 homolog [Bombus impatiens]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/310 (63%), Positives = 236/310 (76%), Gaps = 5/310 (1%)

Query: 1   MSFNNNNKNIWFTMLQE---KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSW 57
           MS N N   I  + L     KLSSY LA+RPWSLSASL+PTLLG ALA +L      FSW
Sbjct: 18  MSKNANCSPITSSTLNSPLMKLSSYFLAVRPWSLSASLMPTLLGSALAYRL-TSTASFSW 76

Query: 58  IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYL 117
           I L +T+ TV  VH AGNVVNTY+DY+ G+D SR+SDDR LVD +LS+ ELVSLG +LY 
Sbjct: 77  ISLILTVYTVFCVHGAGNVVNTYFDYIKGVD-SRKSDDRILVDQLLSKDELVSLGAILYT 135

Query: 118 VSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVL 177
               GF+LL+ ISPA+MEHLA V+F GLSSSFLY+G +G KY ALGDVLIL+IFGPI+VL
Sbjct: 136 AGCLGFVLLTTISPARMEHLALVYFGGLSSSFLYTGGIGFKYIALGDVLILVIFGPISVL 195

Query: 178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVY 237
           FAFM+QTG  E  TI YA+P+ALNTEAILHSNNTRDLESD++ GIVT+AIL+G + SHV 
Sbjct: 196 FAFMAQTGYIELGTIYYAIPLALNTEAILHSNNTRDLESDKKAGIVTLAILIGHTISHVL 255

Query: 238 YAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYF 297
           YAFLLF PY+  VV  + +S ++LLP+ TL +AF IEKQFR P  I  VPK TAKLN++ 
Sbjct: 256 YAFLLFTPYVTLVVLALRYSIWFLLPVTTLPTAFKIEKQFRNPHMIQSVPKQTAKLNMFL 315

Query: 298 GFLYVVAVTL 307
           G LYV+A  L
Sbjct: 316 GILYVIACLL 325

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
FB|FBgn0028375	359	heix "heixuedian" [Drosophila	0.938	0.805	0.625	3.7e-96
ZFIN|ZDB-GENE-030131-3205	336	ubiad1 "UbiA prenyltransferase	0.938	0.860	0.527	1.2e-74
UNIPROTKB|Q28HR4	345	ubiad1 "UbiA prenyltransferase	0.944	0.843	0.5	2.8e-73
UNIPROTKB|Q9Y5Z9	338	UBIAD1 "UbiA prenyltransferase	0.935	0.852	0.505	6.7e-72
UNIPROTKB|Q5ZKS8	333	UBIAD1 "UbiA prenyltransferase	0.935	0.864	0.508	1.1e-71
MGI|MGI:1918957	336	Ubiad1 "UbiA prenyltransferase	0.935	0.857	0.505	1.1e-71
UNIPROTKB|F1RF98	338	UBIAD1 "Uncharacterized protei	0.935	0.852	0.508	1.4e-71
UNIPROTKB|F1NST4	300	UBIAD1 "UbiA prenyltransferase	0.928	0.953	0.512	1.8e-71
UNIPROTKB|F1MQC8	337	UBIAD1 "Uncharacterized protei	0.935	0.854	0.508	3.7e-71
RGD|1309588	338	Ubiad1 "UbiA prenyltransferase	0.935	0.852	0.501	7.7e-71

FB|FBgn0028375 heix "heixuedian" [Drosophila melanogaster (taxid:7227)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 182/291 (62%), Positives = 235/291 (80%)

Query:    18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
             KL +YLLALRPWSLSASL+PTLLG ALA +    + +FS    F+T  TV++VHCAGNVV
Sbjct:    60 KLKTYLLALRPWSLSASLVPTLLGSALAYRSQWAE-EFSLATFFLTAFTVVTVHCAGNVV 118

Query:    78 NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
             NTY+D++ GID  +++DDRTLVDHIL++ E+VSLG +LY+    GF+LL+ +SPAKMEHL
Sbjct:   119 NTYFDFIKGID-KQKADDRTLVDHILTKDEVVSLGAILYMAGCGGFVLLAVLSPAKMEHL 177

Query:   138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
             A ++F GLSSSFLY+G +G KY ALGD++IL++FGPI+VLFAFMSQTG  +W T+ YA+P
Sbjct:   178 ALIYFGGLSSSFLYTGGIGFKYIALGDLVILILFGPISVLFAFMSQTGHLDWTTMGYAIP 237

Query:   198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
             +ALNTEAILHSNNTRD ++DR+ GIVT+AIL+G++ SHV YA LLF PY +F ++G+ +S
Sbjct:   238 LALNTEAILHSNNTRDADNDRRAGIVTLAILIGRTASHVLYAMLLFAPYSLFFIFGLKYS 297

Query:   258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              ++LLPLVTL  AF IEK+FR    +HLVP+ TAKLN +FG LYVVA   A
Sbjct:   298 LWFLLPLVTLPQAFQIEKRFRNEQTMHLVPRQTAKLNFFFGILYVVACCCA 348

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-030131-3205 ubiad1 "UbiA prenyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 155/294 (52%), Positives = 202/294 (68%)

Query:    15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAG 74
             LQ K ++Y+LALRPWS SASL P  LG ALA KL   +G    ++L V  + V+ VH AG
Sbjct:    40 LQSKCAAYVLALRPWSFSASLTPVALGSALAYKL---EGSVDLLLLLVCAVAVLLVHGAG 96

Query:    75 NVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKM 134
             N+VNTYYD+  GID  ++SDDRTLVD IL   ++V  G +LY        LL ++S  K+
Sbjct:    97 NLVNTYYDFSKGID-HKKSDDRTLVDQILKPQDVVMFGAVLYSAGCLCATLLYFLSSLKL 155

Query:   135 EHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICY 194
             EHLA ++F GLSSSFLY+G +GLKY ALGDV+IL+ FGP+ V+FA   Q G      + Y
Sbjct:   156 EHLALIYFGGLSSSFLYTGGIGLKYVALGDVVILITFGPLAVMFAHAVQVGYLSVLPLVY 215

Query:   195 ALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM 254
             A+P+ALNTEAILHSNNTRD++SD+Q GIVT+AILLG + S+V Y  LLF+PY++F +   
Sbjct:   216 AVPLALNTEAILHSNNTRDMDSDKQAGIVTLAILLGPTLSYVIYNLLLFVPYLLFCILAT 275

Query:   255 NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              ++    LPL+TL  AF +E+QFRC      +P+ TAKLNL  G  YV  + LA
Sbjct:   276 RYTISMALPLLTLPMAFPLERQFRCRCYAK-IPQKTAKLNLLMGLFYVFGIILA 328

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q28HR4 ubiad1 "UbiA prenyltransferase domain-containing protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 148/296 (50%), Positives = 204/296 (68%)

Query:    13 TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
             T  ++K ++Y+LALRPWS SASLIP  LG A+A +     G    ++  V  + V++VH 
Sbjct:    49 TSFKQKCATYVLALRPWSFSASLIPVALGTAIAYR---SGGSLDLLLFVVCAVAVLAVHG 105

Query:    73 AGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA 132
             AGN+VNTYYD+  GID  ++SDDRTLVDHIL   ++V  GV LY +       L +IS  
Sbjct:   106 AGNLVNTYYDFSKGID-HKKSDDRTLVDHILEPQDVVRFGVFLYTLGCLCAACLYFISKL 164

Query:   133 KMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATI 192
             K+EHLA ++F GLSSSFLY+G +G KY ALGD++IL+ FGP+ V+FA   Q G      +
Sbjct:   165 KLEHLALIYFGGLSSSFLYTGGIGFKYVALGDLVILITFGPLAVMFAHAVQVGYLAVTPL 224

Query:   193 CYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVW 252
              YA+P+AL+TEAILHSNNTRD+ESDRQ GIVT+AIL+G  +S++ Y  L+F+PY++F + 
Sbjct:   225 LYAVPLALSTEAILHSNNTRDMESDRQAGIVTLAILVGPMFSYMLYNLLVFLPYLIFSIL 284

Query:   253 GMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
                ++    LPL+T+  AFS+E+QFR  +  + +P+ TAKLNL  G  YV  + LA
Sbjct:   285 ATRYTISMALPLLTIPLAFSLERQFRSQN-FNKIPQRTAKLNLLVGLFYVFGIVLA 339

GO:0004659 "prenyltransferase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0042371 "vitamin K biosynthetic process" evidence=ISS

UNIPROTKB|Q9Y5Z9 UBIAD1 "UbiA prenyltransferase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 148/293 (50%), Positives = 201/293 (68%)

Query:    16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
             ++K +SY+LALRPWS SASL P  LG ALA +     G     +L    + V++VH AGN
Sbjct:    43 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SHGVLDPRLLVGCAVAVLAVHGAGN 99

Query:    76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
             +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+SP K+E
Sbjct:   100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSPLKLE 158

Query:   136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
             HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct:   159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLIILITFGPLAVMFAYAIQVGSLAIFPLVYA 218

Query:   196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
             +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G ++S++ Y  LLF+PY+VF +   +
Sbjct:   219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYILYNTLLFLPYLVFSILATH 278

Query:   256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              +    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct:   279 CTISLALPLLTIPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 330

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0009234 "menaquinone biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0042371 "vitamin K biosynthetic process" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5ZKS8 UBIAD1 "UbiA prenyltransferase domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 149/293 (50%), Positives = 203/293 (69%)

Query:    16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
             ++K ++Y+LALRPWS SASL P  LG ALA +    +G     +L  + + V++VH AGN
Sbjct:    38 RQKCAAYVLALRPWSFSASLTPVALGSALAYRA---EGALDPRLLVGSAVAVLAVHGAGN 94

Query:    76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
             +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY V       L  +S  K+E
Sbjct:    95 LVNTYYDFSKGID-HKKSDDRTLVDQILEPQDVVRFGVFLYTVGCICAAGLYAVSTLKLE 153

Query:   136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
             HLA V+F GLSSSFLY+G +G KY ALGDV+IL+ FGP+ V+FA   Q G    + + YA
Sbjct:   154 HLALVYFGGLSSSFLYTGGIGFKYVALGDVVILITFGPLAVMFAHAVQVGYLSVSPLLYA 213

Query:   196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
             +P+AL+TEAILHSNNTRD+ESD+Q GIVT+AI++G ++S+V Y  LLF+PY++F V    
Sbjct:   214 VPLALSTEAILHSNNTRDMESDQQAGIVTLAIIIGPAFSYVLYTVLLFLPYLIFCVLATR 273

Query:   256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
             ++    LPL+T+  AFS+E+QFR  +  + +P+ TAKLNL  G  YV  + LA
Sbjct:   274 YTISMALPLLTIPMAFSLERQFRSQN-FNKIPQRTAKLNLLLGLFYVFGIMLA 325

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0009234 "menaquinone biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0004659 "prenyltransferase activity" evidence=ISS

GO:0042371 "vitamin K biosynthetic process" evidence=ISS

MGI|MGI:1918957 Ubiad1 "UbiA prenyltransferase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 148/293 (50%), Positives = 200/293 (68%)

Query:    16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
             + K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct:    41 RHKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLLGCAVAVLAVHGAGN 97

Query:    76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
             +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+S  K+E
Sbjct:    98 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSALKLE 156

Query:   136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
             HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct:   157 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAIFPLIYA 216

Query:   196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
             +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G ++S+V Y  LLF+PY++F +   +
Sbjct:   217 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTFSYVLYNTLLFVPYLIFTILATH 276

Query:   256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              S    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct:   277 CSISLALPLLTIPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 328

GO:0004659 "prenyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0009234 "menaquinone biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0042371 "vitamin K biosynthetic process" evidence=ISO

UNIPROTKB|F1RF98 UBIAD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 149/293 (50%), Positives = 201/293 (68%)

Query:    16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
             ++K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct:    43 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLVGCAVAVLAVHGAGN 99

Query:    76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
             +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+SP K+E
Sbjct:   100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAACLYYLSPLKLE 158

Query:   136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
             HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct:   159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVVFAYAVQVGSLAVFPLVYA 218

Query:   196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
             +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G + S++ Y  LLF+PY+VF +  ++
Sbjct:   219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTLSYLLYNALLFLPYLVFSILAVH 278

Query:   256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              S    LPL+T+  AFS+E+QFR       +P+ TAKLNL  G  YV  + LA
Sbjct:   279 CSVSLALPLLTIPMAFSLERQFRS-QTFSKLPQRTAKLNLLLGLFYVFGIILA 330

GO:0042371 "vitamin K biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NST4 UBIAD1 "UbiA prenyltransferase domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 149/291 (51%), Positives = 201/291 (69%)

Query:    18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
             + ++Y+LALRPWS SASL P  LG ALA +    +G     +L  + + V++VH AGN+V
Sbjct:     7 RFAAYVLALRPWSFSASLTPVALGSALAYRA---EGALDPRLLVGSAVAVLAVHGAGNLV 63

Query:    78 NTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
             NTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY V       L  +S  K+EHL
Sbjct:    64 NTYYDFSKGID-HKKSDDRTLVDQILEPQDVVRFGVFLYTVGCVCAAGLYAVSTLKLEHL 122

Query:   138 AAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
             A V+F GLSSSFLY+G +G KY ALGDV+IL+ FGP+ V+FA   Q G    + + YA+P
Sbjct:   123 ALVYFGGLSSSFLYTGGIGFKYVALGDVVILITFGPLAVMFAHAVQVGYLSVSPLLYAVP 182

Query:   198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
             +AL+TEAILHSNNTRD+ESD+Q GIVT+AIL+G ++S+V Y  LLF+PY++F V    ++
Sbjct:   183 LALSTEAILHSNNTRDMESDQQAGIVTLAILIGPAFSYVLYTVLLFLPYLIFCVLATRYT 242

Query:   258 YYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
                 LPL+T+  AFS+E+QFR  +  + +P+ TAKLNL  G  YV  + LA
Sbjct:   243 ISMALPLLTIPMAFSLERQFRSQN-FNKIPQRTAKLNLLLGLFYVFGIMLA 292

GO:0016021 "integral to membrane" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0042371 "vitamin K biosynthetic process" evidence=IEA

UNIPROTKB|F1MQC8 UBIAD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 149/293 (50%), Positives = 201/293 (68%)

Query:    16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
             ++K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct:    42 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLVGCAIAVLAVHGAGN 98

Query:    76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
             +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L  +SP K+E
Sbjct:    99 LVNTYYDFSKGID-HKKSDDRTLVDRILEPRDVVRFGVFLYTLGCVCAACLYCLSPLKLE 157

Query:   136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
             HLA ++F GLS SFLY+G +GLKY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct:   158 HLALIYFGGLSGSFLYTGGIGLKYLALGDLVILITFGPLAVMFAYAVQVGSLAVFPLLYA 217

Query:   196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
             +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G + S+V Y  LLF+PY+ F +  ++
Sbjct:   218 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTLSYVLYNTLLFLPYLAFSILAVH 277

Query:   256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              S    LPL+T+  AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct:   278 CSISLALPLLTIPMAFSLERQFRS-QTFNKLPQKTAKLNLLLGLFYVFGIILA 329

GO:0042371 "vitamin K biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309588 Ubiad1 "UbiA prenyltransferase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 147/293 (50%), Positives = 199/293 (67%)

Query:    16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGN 75
             ++K +SY+LALRPWS SASL P  LG ALA +    +G     +L    + V++VH AGN
Sbjct:    43 RQKCASYVLALRPWSFSASLTPVALGSALAYR---SQGVLDPRLLLGCAVAVLAVHGAGN 99

Query:    76 VVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME 135
             +VNTYYD+  GID  ++SDDRTLVD IL   ++V  GV LY +       L Y+S  K+E
Sbjct:   100 LVNTYYDFSKGID-HKKSDDRTLVDRILEPQDVVRFGVFLYTLGCVCAAYLYYLSTLKLE 158

Query:   136 HLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYA 195
             HLA ++F GLS SFLY+G +G KY ALGD++IL+ FGP+ V+FA+  Q G      + YA
Sbjct:   159 HLALIYFGGLSGSFLYTGGIGFKYVALGDLVILITFGPLAVMFAYAVQVGSLAIFPLVYA 218

Query:   196 LPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMN 255
             +P+AL+TEAILHSNNTRD+ESDR+ GIVT+AIL+G + S++ Y  LLF+PY++F +   +
Sbjct:   219 IPLALSTEAILHSNNTRDMESDREAGIVTLAILIGPTLSYILYNTLLFLPYLIFTILATH 278

Query:   256 HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA 308
              S    LPL+T   AFS+E+QFR     + +P+ TAKLNL  G  YV  + LA
Sbjct:   279 CSISLALPLLTSPMAFSLERQFRS-QAFNKLPQRTAKLNLLLGLFYVFGIILA 330

GO:0004659 "prenyltransferase activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0009234 "menaquinone biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0042371 "vitamin K biosynthetic process" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZKS8	UBIA1_CHICK	2, ., 5, ., 1, ., -	0.5085	0.9350	0.8648	yes	N/A
Q9DC60	UBIA1_MOUSE	2, ., 5, ., 1, ., -	0.5051	0.9350	0.8571	yes	N/A
Q9V3R8	UBIA1_DROME	2, ., 5, ., 1, ., -	0.6254	0.9383	0.8050	yes	N/A
D2HKB0	UBIA1_AILME	2, ., 5, ., 1, ., -	0.5017	0.9350	0.8545	yes	N/A
Q9Y5Z9	UBIA1_HUMAN	2, ., 5, ., 1, ., -	0.5051	0.9350	0.8520	yes	N/A
P39582	MENA_BACSU	2, ., 5, ., 1, ., 7, 4	0.2880	0.9318	0.9228	yes	N/A
Q54K99	UBIA1_DICDI	No assigned EC number	0.3344	0.9025	0.8424	yes	N/A
Q28HR4	UBIA1_XENTR	2, ., 5, ., 1, ., -	0.5	0.9448	0.8434	yes	N/A
D3ZG27	UBIA1_RAT	2, ., 5, ., 1, ., -	0.5017	0.9350	0.8520	yes	N/A
P44739	MENA_HAEIN	2, ., 5, ., 1, ., 7, 4	0.2898	0.8116	0.8116	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	308
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	3e-35
PRK06080	293	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate oct	2e-34
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	6e-22
TIGR00751	284	TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octapr	2e-19
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	4e-19
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	1e-09
PRK13387	317	PRK13387, PRK13387, 1,4-dihydroxy-2-naphthoate oct	5e-08
PRK07419	304	PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate oct	1e-06
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-06

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score =  128 bits (325), Expect = 3e-35
 Identities = 83/304 (27%), Positives = 138/304 (45%), Gaps = 15/304 (4%)

Query: 13  TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
           +    K   +L   RP +L A++ P ++G ALA         F+ ++  + L+  I +  
Sbjct: 2   SQKTSKTQLWLELARPKTLPAAIAPVIVGTALAF---WYGKSFNLLVALLALIAAILLQI 58

Query: 73  AGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESEL---VSLGVMLYLVSSAGFILLSYI 129
             N+ N Y+DY  G DT     DR     ++    +   + L + L+L++    + +   
Sbjct: 59  LVNLANDYFDYKKGTDT--HGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILA 116

Query: 130 SPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
           + +    L     C  +      G   L Y  LG++ + + FGP+ VL A+  QTGR  W
Sbjct: 117 ALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSW 176

Query: 190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF 249
           A +  +LPV +    IL +NN RD+E D + G  T+A+ LG+  +   YA LL + Y + 
Sbjct: 177 AILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAY-LA 235

Query: 250 VVWGM---NHSYYYLLPLVTLKSAFSIEKQFRC---PDKIHLVPKLTAKLNLYFGFLYVV 303
           +V  +       + LL L+ L  A    +  R    P  +  + K T K NL +  L  V
Sbjct: 236 IVIFVILGLFPVWGLLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAV 295

Query: 304 AVTL 307
            + L
Sbjct: 296 GILL 299

Length = 303

>gnl|CDD|235695 PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

 Score =  126 bits (319), Expect = 2e-34
 Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 26/304 (8%)

Query: 18  KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV 77
              ++L   RP +L A+  P L+G ALA  L    G F  ++  + LL  + +  A N+ 
Sbjct: 2   TFKAWLELARPKTLPAAFAPVLVGTALAYWL----GSFHPLLALLALLAALLLQIATNLA 57

Query: 78  NTYYDYVLGIDTSRRSDD-RTLVDHILSESELVSLGVMLYLVSS-AGFILLSYISPAKME 135
           N Y DYV G DT  R    R +    +S  ++    +  + +++  G  L++        
Sbjct: 58  NDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWW--- 114

Query: 136 HLAAVFFCGLSS---SFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQTGRWEW 189
            L  +   GL     + LY+G  G K   YT LG++ + + FG + VL  +  Q G  + 
Sbjct: 115 -LLLL---GLLCIAAAILYTG--GPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVDS 168

Query: 190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF 249
           A    ALP  L   A+L +NN RD+E+DR+ G  T+A+ LG   +   +A LL + Y+  
Sbjct: 169 AVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCI 228

Query: 250 VV-WGMN-HSYYYLLPLVTLKSAFSIEKQFRC-PDKIHLVP--KLTAKLNLYFGFLYVVA 304
           V+   +   S + LL L++L  A    +          L+P  K T K NL FG L+ + 
Sbjct: 229 VLLALLGLASPWGLLFLLSLPLAVKAARPVLRKQKPETLIPALKATGKTNLLFGLLFAIG 288

Query: 305 VTLA 308
           + L+
Sbjct: 289 LLLS 292

Length = 293

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 92.2 bits (229), Expect = 6e-22
 Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 14/273 (5%)

Query: 31  LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS 90
           L  +L+P L G ALA       G    ++L + LL ++ +  AGNV+N Y+DY +  D  
Sbjct: 1   LPLALLPVLAGLALA-----AGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNP 55

Query: 91  RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFL 150
            + D R L    +S  E + LG+ L L+     +LL  +       L  +   GL    L
Sbjct: 56  NKPD-RPLPSGRISPREALLLGLALLLLGLLLALLLGPL-------LLLLGLLGLLLGLL 107

Query: 151 YSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNN 210
           YS  L LK   L   L++ +   + +L    +  G      +  ALPV L + AIL +N+
Sbjct: 108 YSPPLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTND 167

Query: 211 TRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYYLLPLVTLKSA 270
            RD+E DR+ GI T+ + LG+  +   YA LL    ++ ++  +  +   LL  V L  A
Sbjct: 168 IRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLL-LA 226

Query: 271 FSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVV 303
            ++    R   + +        L +   F  ++
Sbjct: 227 LALLVAARLLRRRNPEEPARTFLFIALLFGLLL 259

Length = 259

>gnl|CDD|129834 TIGR00751, menA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase

 Score = 86.1 bits (213), Expect = 2e-19
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 13/223 (5%)

Query: 27  RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLG 86
           RP +L  ++ P + G ALA  L      F W++  + L T + +    N  N Y D + G
Sbjct: 1   RPKTLPLAIAPIVAGTALAAWL----HAFVWLVALLALATAVLLQILSNYANDYGDGIKG 56

Query: 87  IDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSA----GFILLSYISPAKMEHLAAVFF 142
            DT  R      V   L     V   ++  +   A       LL+  + + +    A+  
Sbjct: 57  SDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGA 116

Query: 143 CGLSSSFLYSGCLGLK---YTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVA 199
             ++++  Y+   G K   Y  LGD+ +L+ FGP+ VL     Q  R +W  I  A+   
Sbjct: 117 LCIAAAITYTV--GSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATG 174

Query: 200 LNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLL 242
           L   A+L+ NN RD+ +D + G  T+A+ LG + + +Y+  LL
Sbjct: 175 LLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLL 217

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 284

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 85.2 bits (211), Expect = 4e-19
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 15/287 (5%)

Query: 27  RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLG 86
           RPWS   + I      A           F  ++  + LL    +H + NV N Y DYVL 
Sbjct: 12  RPWSFVMTAIVAFFSIAYG---YYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLD 68

Query: 87  IDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSY-ISPAKMEHLAAVFF--C 143
            D    +  R    H + ++ +++LG +  L  + G I L    S      + AV     
Sbjct: 69  CDHHETTGYRQ---HPI-QAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALL 124

Query: 144 GLSSSFLYSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNT 202
           G+     Y G    LKY  LG+ L+   +  + V+       G      +   +P+ L  
Sbjct: 125 GVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLM 184

Query: 203 EAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSY--YY 260
             +L SNN RD+E D + GI T+A++ G+      Y F L  PY++  +  +        
Sbjct: 185 ALVLLSNNLRDIEDDERKGIPTLAVIFGRR-GAALYIFALLSPYVILQILLIAILTPLIS 243

Query: 261 LLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL 307
           L  L++L  A+++              + T +L + FG+LY++A  L
Sbjct: 244 LWALLSLLVAYALCLWQL-RKFPPDPDEATVQLFMLFGYLYILATLL 289

Length = 296

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 20/256 (7%)

Query: 22  YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYY 81
           +L A++P   S +++P L+G A+A       G F      + L+  I +    N+ N  +
Sbjct: 2   WLAAIKPPLYSVAVMPILVGTAVAWGQ---GGVFHLDRFALFLIAAILILAWINLTNDVF 58

Query: 82  DYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVF 141
           D   GID   R    ++V+   S S +  L          G + ++ +S         V 
Sbjct: 59  DSDTGID---RFKLHSIVNLTGSRSLVFWLA---NFFLLIGLVGIAALS---WRWQITVL 109

Query: 142 FCGLSSSFL---YSGC-LGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALP 197
                  FL   Y G    L Y  LG+ +  + FGP+ +  A  +Q+  +       ++ 
Sbjct: 110 ALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASIL 169

Query: 198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHS 257
           V L T  IL  ++   +E D   G  +  + LG   +     +++ + Y+V ++  +   
Sbjct: 170 VGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG- 228

Query: 258 YYYLLPLVTLKSAFSI 273
               LP  TL +  SI
Sbjct: 229 ---FLPWTTLLALASI 241

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|237373 PRK13387, PRK13387, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 66/317 (20%), Positives = 129/317 (40%), Gaps = 34/317 (10%)

Query: 19  LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVN 78
              +L  +   +  AS  P +LG   ++ +      F W++    ++ +++   A   +N
Sbjct: 3   AKLFLKLVEIHTKIASFFPVILGTLFSLYV---AKIFDWLLFLAFMVAMLAFDIATTAIN 59

Query: 79  TYYDYVLGIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL 137
            Y D+   +DT+        +  H L    ++++ +++Y+V++   + L   +   +  +
Sbjct: 60  NYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVI 119

Query: 138 AAVFFCGLSSSFLYS-GCLGLKYTALGDVL--ILMIFG--------------PITVLF-- 178
             + F       LY+ G L L    LG++   + M FG                ++LF  
Sbjct: 120 GLICFA---IGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQG 176

Query: 179 -AFMSQTGRWE-WATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV 236
             F  Q       A    +LP+      I+ +NN RDL+ D +    T+   +G+    V
Sbjct: 177 EMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVV 236

Query: 237 YYAFLLFIPY--IVFVVWGMNHSYYYLLPLVTL----KSAFSIEKQFRCPDKIHLVPKLT 290
            +A L +  Y  I  +V     S + LL  +TL     +  S +K+ + P    +  + T
Sbjct: 237 LFAILFYASYLAIAVIVLMGYISPWALLSFLTLRKPISNLQSFQKEAKDPKYFVIAIRNT 296

Query: 291 AKLNLYFGFLYVVAVTL 307
              N  FGFL   ++ +
Sbjct: 297 VLTNTTFGFLLSASLLI 313

Length = 317

>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 22/216 (10%)

Query: 13  TMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHC 72
           +M   +   +L A++P   S +++P L+G A A+    E G F        LL  I +  
Sbjct: 6   SMSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALG---ETGVFRLDQFITFLLAAILILA 62

Query: 73  AGNVVNTYYDYVLGIDTS------RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILL 126
             N+ N  +D   GID +        + +++LV  + +   L+ L  +L +   + + +L
Sbjct: 63  WENLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVL 122

Query: 127 SYISPAKMEHLAAVFFCGLSSSFLYSG-CLGLKYTALGDVLILMIFGPITVLFAFMSQTG 185
             +             C L   +LY G    L Y  LG+ L  + FGP+ V  A  SQT 
Sbjct: 123 GLVLLC----------CFL--GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTP 170

Query: 186 RWEWATICYALPVALNTEAILHSNNTRDLESDRQVG 221
            W    +  ++ + L T  IL  ++   +E D   G
Sbjct: 171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAG 206

Length = 304

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 59/257 (22%), Positives = 100/257 (38%), Gaps = 19/257 (7%)

Query: 12  FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVH 71
                + L   L   RP      L+P LLG  LA       G  S  +L +  L      
Sbjct: 6   LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS-----GLPSLKLLLLAFLAFFLAR 60

Query: 72  CAGNVVNTYYDYVLGID-TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYIS 130
            AG V+N   D    ID  + R+ +R L    +S  E + L ++L L+  A  +LL+ ++
Sbjct: 61  SAGYVINDLADR--EIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLA 118

Query: 131 PAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQTGRWEWA 190
                    +    L  +  Y      ++T L  +++ + FG +  L    +  G     
Sbjct: 119 -------FLLSLAALVLALAYP--FLKRFTFLPQLVLGLAFG-LGALAGAAAVGGSLPLL 168

Query: 191 TICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV 250
                L   L T         +D+E DR+ G+ ++ +L G     +  A LL +   + V
Sbjct: 169 AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGI-KKALALALLLLLASALLV 227

Query: 251 VWGMNHSYYYLLPLVTL 267
           + G+      L+ L+ L
Sbjct: 228 LLGLLAGLLGLIYLLGL 244

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PLN02922	315	prenyltransferase	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
KOG4581|consensus	359		100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12875	282	ubiA prenyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.98
PRK12895	286	ubiA prenyltransferase; Reviewed	99.98
PRK12872	285	ubiA prenyltransferase; Reviewed	99.97
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.97
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.97
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.96
PRK12876	300	ubiA prenyltransferase; Reviewed	99.96
PRK12873	294	ubiA prenyltransferase; Reviewed	99.95
PLN02878	280	homogentisate phytyltransferase	99.95
PRK13591	307	ubiA prenyltransferase; Provisional	99.94
PLN02776	341	prenyltransferase	99.92
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.78
PRK08238	479	hypothetical protein; Validated	99.72
KOG1381|consensus	353		99.65
KOG1380|consensus	409		99.38
PRK12884	279	ubiA prenyltransferase; Reviewed	95.24
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	94.89
PRK13595	292	ubiA prenyltransferase; Provisional	94.15
PRK12882	276	ubiA prenyltransferase; Reviewed	93.72
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	93.67
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	93.07
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	92.36
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	92.26
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	91.87
PRK12876	300	ubiA prenyltransferase; Reviewed	91.74
PRK13106	300	ubiA prenyltransferase; Reviewed	91.5
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	91.2
PRK12895	286	ubiA prenyltransferase; Reviewed	91.14
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	90.74
PRK12871	297	ubiA prenyltransferase; Reviewed	90.58
PRK13591	307	ubiA prenyltransferase; Provisional	90.28
PRK12888	284	ubiA prenyltransferase; Reviewed	89.97
PRK12875	282	ubiA prenyltransferase; Reviewed	89.81
PLN00012	375	chlorophyll synthetase; Provisional	89.77
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	89.43
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.19
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.17
PRK12873	294	ubiA prenyltransferase; Reviewed	89.02
PRK12872	285	ubiA prenyltransferase; Reviewed	88.79
PRK08238	479	hypothetical protein; Validated	88.59
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	88.56
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	88.04
PRK04375	296	protoheme IX farnesyltransferase; Provisional	87.91
PRK13362	306	protoheme IX farnesyltransferase; Provisional	87.89
PRK12886	291	ubiA prenyltransferase; Reviewed	87.82
PLN02776	341	prenyltransferase	87.66
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	87.19
PRK12392	331	bacteriochlorophyll c synthase; Provisional	87.06
PRK05951	296	ubiA prenyltransferase; Reviewed	87.02
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	86.6
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	86.48
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	85.79
PRK12874	291	ubiA prenyltransferase; Reviewed	85.05
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.05
PRK13592	299	ubiA prenyltransferase; Provisional	83.98
PRK13105	282	ubiA prenyltransferase; Reviewed	82.28
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	80.43

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=3.6e-55  Score=398.97  Aligned_cols=286  Identities=23%  Similarity=0.343  Sum_probs=252.4

Q ss_pred             hccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC
Q psy14930         14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRS   93 (308)
Q Consensus        14 ~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~   93 (308)
                      +.+++++.|++++||++++.+++|+++|.++|++.++   ++|+..+++++++++++|+++|.+|||+||++|+|++++ 
T Consensus         7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~---~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~-   82 (304)
T PRK07419          7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETG---VFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF-   82 (304)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-
Confidence            3556789999999999999999999999999988765   899999999999999999999999999999999997422 


Q ss_pred             CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHH
Q psy14930         94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFG  172 (308)
Q Consensus        94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G  172 (308)
                        +..+++..++++++..+..++++++++|+++.+..+.  . ...+.+.|+..+++||.|| |+||+|+||+.+++.||
T Consensus        83 --~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~--~-~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G  157 (304)
T PRK07419         83 --HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDW--T-VLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFG  157 (304)
T ss_pred             --cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcH--H-HHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHH
Confidence              1233455579999999999999999999988876652  2 2333444678899999999 99999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHH
Q psy14930        173 PITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVW  252 (308)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~  252 (308)
                      ++++.++||+|++++++..++.++|.++++.+++++||+||+|+||++||||+|+++|+|+++++|..+...+|+..+..
T Consensus       158 ~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~  237 (304)
T PRK07419        158 PLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLP  237 (304)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888766


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHhcC----CccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        253 GM--NHSYYYLLPLVTLKSAFSIEKQFRC----PDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       253 ~~--~~~~~~ll~ll~lp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                      ..  ..|++.+++++++|++.+..|.+++    ++++++..+++++.++++|+++++|++++
T Consensus       238 v~~g~~p~~~Ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~g~l~~l~~~l~  299 (304)
T PRK07419        238 VLLGFWPWTTLLSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLGLILA  299 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54  3677888999999999999887654    24567788899999999999999999864

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1.2e-54  Score=398.90  Aligned_cols=285  Identities=21%  Similarity=0.340  Sum_probs=254.5

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD   95 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~   95 (308)
                      |++|.|++++||+++++++.|+++|.++|++.++   ++|+..+++++++++++|+++|++|||+|+++|.|++ .++++
T Consensus         1 m~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~---~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~   77 (317)
T PRK13387          1 MSAKLFLKLVEIHTKIASFFPVILGTLFSLYVAK---IFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIG   77 (317)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCc
Confidence            4579999999999999999999999999987665   8999999999999999999999999999999999985 46789


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPI  174 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l  174 (308)
                      |++++|.+|+|+++..+..++.+++++|+++.+..+.  . ..++.+.++..+++||.|| ++||+|+||+.+++.+|++
T Consensus        78 ~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~--~-~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~  154 (317)
T PRK13387         78 NGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW--L-LLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFG  154 (317)
T ss_pred             chhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH--H-HHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999998876652  1 2333445777899999999 9999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHH--------------------HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhh
Q psy14930        175 TVLFAFMSQTGRWEWATIC--------------------YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYS  234 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l--------------------~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a  234 (308)
                      ++.+++|+|++++++..++                    .++|.++.+.+++++||+||+|+||++||||+|+++|+|+|
T Consensus       155 ~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a  234 (317)
T PRK13387        155 IFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG  234 (317)
T ss_pred             HHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence            9999999999998887665                    89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC----ccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        235 HVYYAFLLFIPYIVFVVWGM--NHSYYYLLPLVTLKSAFSIEKQFRCP----DKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       235 ~~l~~~l~~~~~~~~~~~~~--~~~~~~ll~ll~lp~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ++++..+...+|+.++....  ..|++.+++++++|++.+..|.++++    +++++..+++++.+..+++++.+|+++
T Consensus       235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~ll~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll  313 (317)
T PRK13387        235 VVLFAILFYASYLAIAVIVLMGYISPWALLSFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLI  313 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988766543  36778889999999999998876543    445667788999999999999999875

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=4.2e-54  Score=389.38  Aligned_cols=274  Identities=24%  Similarity=0.376  Sum_probs=244.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCceecccCCH
Q psy14930         27 RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILSE  105 (308)
Q Consensus        27 Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l~~g~ls~  105 (308)
                      ||++++.++.|+++|.++|+++ +   .+|+..+++++++++++|+++|+.|||+|+++|+|++ +.+|+|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~-~---~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWL-H---AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHc-C---CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            9999999999999999999876 4   8999999999999999999999999999999999964 457899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchh---hHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHHHHHHHHH
Q psy14930        106 SELVSLGVMLYLVSSAGFILLSYISPAKM---EHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPITVLFAFM  181 (308)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l~~~~~~~  181 (308)
                      ++++..+..++.+++++|+++.+..+..+   .....+.+.+++.+++||.|| |+||+|+||+.++++||++++.++||
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y  156 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877665211   112233344677899999999 99999999999999999999999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH--HHHHH
Q psy14930        182 SQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM--NHSYY  259 (308)
Q Consensus       182 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~--~~~~~  259 (308)
                      +|++++++..++.++|.++++.+++++||+||+|+|+++||||+|+++|+|+++++|..+...+|+..+....  ..|+|
T Consensus       157 vq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~  236 (284)
T TIGR00751       157 LQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWW  236 (284)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987766543  36778


Q ss_pred             HHHHHHHHHHHHHHHHHhcC---CccccccHHHHHHHHHHHHHHHHHH
Q psy14930        260 YLLPLVTLKSAFSIEKQFRC---PDKIHLVPKLTAKLNLYFGFLYVVA  304 (308)
Q Consensus       260 ~ll~ll~lp~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~  304 (308)
                      .+++++++|++.+..|.+++   ++++++..+++++.++++++++.+|
T Consensus       237 ~ll~ll~lPl~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~~~l~~ig  284 (284)
T TIGR00751       237 CVLFLLAAPLLLKAAGPVRSGRGPRELRPVLRDTGLAMLLWNLLFALG  284 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88899999999999887754   3567788899999999999999864

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=1.3e-53  Score=386.40  Aligned_cols=276  Identities=22%  Similarity=0.304  Sum_probs=243.3

Q ss_pred             HHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-CCCCceec
Q psy14930         22 YLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRR-SDDRTLVD  100 (308)
Q Consensus        22 ~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~-~~~r~l~~  100 (308)
                      |++++||++++.++.|+++|.++|++.+|   ++|+..+++++++++++|+++|++|||+||++|+|+++. ++.|.   
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~---~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~---   75 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGG---VFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNL---   75 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccc---
Confidence            78999999999999999999999988766   899999999999999999999999999999999997433 33343   


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHHHHHHH
Q psy14930        101 HILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPITVLFA  179 (308)
Q Consensus       101 g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l~~~~~  179 (308)
                       ..|+++++..+..++.+++++|+++.+..+  +. ...+...++..+++||.|| |+||+|+||+.+++.||++++.++
T Consensus        76 -~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~--~~-~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~  151 (285)
T TIGR02235        76 -TGSRSLVFWLANFFLLIGLVGIAALSWRWQ--IT-VLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAA  151 (285)
T ss_pred             -cCcHHHHHHHHHHHHHHHHHHHHHHHHHhh--HH-HHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHH
Confidence             346899999999999999999988877654  22 2233344778899999999 999999999999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH--HHH
Q psy14930        180 FMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM--NHS  257 (308)
Q Consensus       180 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~--~~~  257 (308)
                      ||+|++++++..++.++|.++++.+++++||+||+|+|+++||||+|+++|+|++++++..+...+|+..+....  ..|
T Consensus       152 ~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p  231 (285)
T TIGR02235       152 LYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLP  231 (285)
T ss_pred             HHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998776553  356


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC----CccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        258 YYYLLPLVTLKSAFSIEKQFRC----PDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       258 ~~~ll~ll~lp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ++.+++++++|++.+..|.+++    ++++++..+++++.++.+|+++++|+++
T Consensus       232 ~~~ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~~~g~l~~~g~~~  285 (285)
T TIGR02235       232 WTTLLALASIPWAVKLIRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLGLLL  285 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6778999999999999887654    2556778889999999999999999864

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.5e-53  Score=378.26  Aligned_cols=284  Identities=30%  Similarity=0.459  Sum_probs=249.2

Q ss_pred             cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCC---CCCCC
Q psy14930         18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDT---SRRSD   94 (308)
Q Consensus        18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~---~~~~~   94 (308)
                      +.+.|++++||+++++++.|++.|.++|.++++   .+++..+++++++++++|+++|..|||+|+++|.|+   ++.+.
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~---~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGK---SFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            357899999999999999999999999998765   799999999999999999999999999999999996   24566


Q ss_pred             CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHH
Q psy14930         95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGP  173 (308)
Q Consensus        95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~  173 (308)
                      ++.+.+..++++........+++.+.++++++...++  +. ...+...+++.+++||.+| |++|.|+||+.++++||+
T Consensus        84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~--~~-~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~  160 (303)
T COG1575          84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSD--WL-VLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGP  160 (303)
T ss_pred             cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH-HHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHH
Confidence            7778888888888888888877777777766555544  22 2223334677899999999 999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930        174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG  253 (308)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~  253 (308)
                      +.+.++||.|++++++..++.++|.++.+.+++++||+||+|+|+++||+|+|||+|+|+++.++..+...+|+..++..
T Consensus       161 l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~  240 (303)
T COG1575         161 LIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFV  240 (303)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887754


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHhcCC---ccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        254 M--NHSYYYLLPLVTLKSAFSIEKQFRCP---DKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       254 ~--~~~~~~ll~ll~lp~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      .  ..++|.++.++++|+++|..|.++++   ++..+..+.+.+.+..+++++.+++++
T Consensus       241 i~~~~~~~~ll~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~  299 (303)
T COG1575         241 ILGLFPVWGLLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILL  299 (303)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  35566688899999999999987653   567777889999999999999999875

>PLN02922 prenyltransferase

Probab=100.00  E-value=1.1e-52  Score=384.82  Aligned_cols=285  Identities=19%  Similarity=0.249  Sum_probs=241.4

Q ss_pred             hccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-
Q psy14930         14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRR-   92 (308)
Q Consensus        14 ~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~-   92 (308)
                      |.++++|.|++++||++++.++.|+++|.++|++.+|   .+||..+++++++++++|+++|++|||+||++|+|++++ 
T Consensus        10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g---~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~   86 (315)
T PLN02922         10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTG---LFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKE   86 (315)
T ss_pred             CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCC
Confidence            3556689999999999999999999999999988766   899999999999999999999999999999999997533 


Q ss_pred             CCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHH
Q psy14930         93 SDDRTLVDHILSESELVSLGVMLYLVSSAGFILLS-YISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMI  170 (308)
Q Consensus        93 ~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~  170 (308)
                      ++.|...    |+++++..+..+++++++ +.++. ..... +. ..++.+.++..+++||.|| |+||+|+||+.++++
T Consensus        87 ~~~~~~~----s~~~v~~~~~~~~~la~~-g~~ll~~~~~~-~~-~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~  159 (315)
T PLN02922         87 SVVNLVG----SRRGVLAAAIGCLALGAA-GLVWASLVAGN-IR-VILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAA  159 (315)
T ss_pred             CCCCccc----CHHHHHHHHHHHHHHHHH-HHHHHHHHccC-hH-HHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHH
Confidence            3445544    999999999999888875 44443 32221 22 2334455778899999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHH
Q psy14930        171 FGPITVLFAFMSQTG----------RWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAF  240 (308)
Q Consensus       171 ~G~l~~~~~~~~~~~----------~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~  240 (308)
                      ||++++.++|++|++          +++++.++.++|.++++.+++++||+||+|+||++||||+|+++|+|++++++..
T Consensus       160 fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~  239 (315)
T PLN02922        160 FGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHH
Confidence            999999999999988          4677888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHhcC----CccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        241 LLFIPYIVFVVWGM--NHSYYY-LLPLVTLKSAFSIEKQFRC----PDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       241 l~~~~~~~~~~~~~--~~~~~~-ll~ll~lp~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                      +...+|+..+....  ..|.+. +++++++|++.+..+.+++    +++..+..+.+++.++++|+++++|++++
T Consensus       240 l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~  314 (315)
T PLN02922        240 AVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALGLVLA  314 (315)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999988876654  355554 5788899998887776543    34456667789999999999999999875

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-52  Score=379.03  Aligned_cols=284  Identities=24%  Similarity=0.335  Sum_probs=247.7

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC--C
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRS--D   94 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~--~   94 (308)
                      +++|.|++++||++++++..|+++|.++|++++|   ++|+..+++++++++++|+++|.+|||+|+++|.|+++++  +
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~---~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFR---SFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            4689999999999999999999999999998766   8999999999999999999999999999999999986544  7


Q ss_pred             CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHH
Q psy14930         95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGP  173 (308)
Q Consensus        95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~  173 (308)
                      +||+++|++|++|++..+..+..+++.+++++....+.  . ...+.+.++..++.||.|| ++||+|+||+.+++.+|+
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~--~-~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~  155 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI--G-AVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSH  155 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH--H-HHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHH
Confidence            89999999999999999999888888887776654442  1 2233345677899999999 999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930        174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG  253 (308)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~  253 (308)
                      +++++++++|++++++..+..++|.++++.+++++||+||+|+||++||||+|+++|+|++ +++..+...+|+.++.+.
T Consensus       156 ~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~  234 (296)
T PRK05951        156 MLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILL  234 (296)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999 888888888888776655


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        254 M--NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       254 ~--~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                      .  ..|.+.+++++++|++.+..+..+++.+.++ +..+++.++.+|+++.+|++++
T Consensus       235 ~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~~~~l~  290 (296)
T PRK05951        235 IAILTPLISLWALLSLLVAYALCLWQLRKFPPDP-DEATVQLFMLFGYLYILATLLS  290 (296)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            3  3566778889999999988776654333333 5579999999999999998764

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=2e-50  Score=369.28  Aligned_cols=285  Identities=29%  Similarity=0.413  Sum_probs=251.2

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD   95 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~   95 (308)
                      |++|.|++++||++++.+..|+++|.++|+.. +   .+++..+++++++++++|.++|.+|||+|+|+|+|++ +++++
T Consensus         1 ~~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~---~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~   76 (293)
T PRK06080          1 STFKAWLELARPKTLPAAFAPVLVGTALAYWL-G---SFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPL   76 (293)
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-C---CccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCc
Confidence            45899999999999999999999999999653 4   7899999999999999999999999999999999965 57899


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPI  174 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l  174 (308)
                      ||+++|++|++|++..+..+..+++++|+++....+.   ....+.+.+++.+++||.+| ++||+|+||+.+++.+|++
T Consensus        77 r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~  153 (293)
T PRK06080         77 RAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW---WLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLV  153 (293)
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHH
Confidence            9999999999999999999998888888877665431   12223334566889999998 8999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM  254 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  254 (308)
                      ++.++++.|+++++++.++.++|.++++.++++.||+||+|+||++|+||+|+++|+|++++++..+..++|+..+....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~  233 (293)
T PRK06080        154 IVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLAL  233 (293)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776554


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhcC---CccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        255 --NHSYYYLLPLVTLKSAFSIEKQFRC---PDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       255 --~~~~~~ll~ll~lp~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                        ..|++.+++++++|++.++++.+++   +++..+..+.+++.+..+++++++|++++
T Consensus       234 ~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (293)
T PRK06080        234 LGLASPWGLLFLLSLPLAVKAARPVLRKQKPETLIPALKATGKTNLLFGLLFAIGLLLS  292 (293)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              3577888999999999999887654   24455667789999999999999999875

>KOG4581|consensus

Probab=100.00  E-value=9e-46  Score=312.63  Aligned_cols=292  Identities=53%  Similarity=0.916  Sum_probs=272.8

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSD   94 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~   94 (308)
                      ..|+.+.|+.+.|||++.+++.|..+|.++|++.+| ..+++...+.++..+++..|.++|+.|.|||+.+|+|+ ++..
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~-~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~-kkad  134 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHG-AEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDH-KKAD  134 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhcc-ccchhHHHHHHHHhhheeeecccchhhhhhhhhhcccc-cccc
Confidence            567889999999999999999999999999998776 23467777888989999999999999999999999995 5677


Q ss_pred             CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHH
Q psy14930         95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPI  174 (308)
Q Consensus        95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l  174 (308)
                      +|.+++..+++.++.+++..++..+|.+...+.+.++.+++.++++.+||+...+.||++..+||..+|++.+.+.|||+
T Consensus       135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fgpi  214 (359)
T KOG4581|consen  135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFGPI  214 (359)
T ss_pred             chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEeccCEEEEEeechH
Confidence            89999999999999999999999999988888889998888899999999999999999878999999999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM  254 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  254 (308)
                      .++.+|..|+|+..|.+.-+++|..+-+.++++.||.||.|.||++|+-|+++.+|+..+..+|..+.+.+|+++.++..
T Consensus       215 avlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~  294 (359)
T KOG4581|consen  215 AVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFAL  294 (359)
T ss_pred             HHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        255 NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       255 ~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                      ..+.|..+|++++|++++.-|++|+.+..++.+++++|.|+++|+++..+++.+
T Consensus       295 ~~si~~~lplltip~afqiek~frneqa~~~lp~qtakln~~~gi~yv~~~~~a  348 (359)
T KOG4581|consen  295 HCSISFALPLLTIPMAFQIEKQFRNEQAFHKLPQQTAKLNFFFGIFYVFACCCA  348 (359)
T ss_pred             HHHHHHHhHHhhchhHHhHHHHhhhHhhhhhcchhhhhHHHHHHHHHHHHHHHh
Confidence            888999999999999999999999988999999999999999999999998754

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=2e-41  Score=310.66  Aligned_cols=275  Identities=17%  Similarity=0.188  Sum_probs=223.1

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHH------HHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWII------LFVTLLTVISVHCAGNVVNTYYDYVLGID   88 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~------~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D   88 (308)
                      .++++|.|+|++||++++.++.|+++|...+    |   .+++..      .+..++++.+.|+++|.+|||+|+|  .|
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~----~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d--~D   82 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS----G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRD--ID   82 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHc----C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--hh
Confidence            4456899999999999999999999998852    3   465544      2445678899999999999999985  57


Q ss_pred             CCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHheeccCCC-CCCccc-chhH
Q psy14930         89 TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA-KMEHLAAVFFCGLSSSFLYSGCL-GLKYTA-LGDV  165 (308)
Q Consensus        89 ~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~-lge~  165 (308)
                      + +++++||+++|++|+++++..+..+..+++++++++....+. .+. ...+.+.+++.+++||.|| ++||++ +||+
T Consensus        83 ~-~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~-~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i  160 (306)
T TIGR02056        83 A-INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPN-VFVLALFGSFIAFIYSAPPLKLKQNGWLGNF  160 (306)
T ss_pred             c-cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH-HHHHHHHHHHHHHHHcCChhhhhhcccHHHH
Confidence            3 567899999999999999999999988888888776533321 111 2233344667799999998 999997 7999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930        166 LILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       166 ~v~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~  245 (308)
                      .++..++..++.+++ ++++++++..++.+++.++++.++++.||+||+|+|+++|+||+|+++|+|++++++..+...+
T Consensus       161 ~vg~~~~~~~~~~~~-a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~  239 (306)
T TIGR02056       161 ALGASYIALPWWAGH-ALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIF  239 (306)
T ss_pred             HHHHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHH
Confidence            998888877776654 6688999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHH
Q psy14930        246 YIVFVVWGM--NHSY-YYLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLY  301 (308)
Q Consensus       246 ~~~~~~~~~--~~~~-~~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  301 (308)
                      +...+.+..  ..++ +.++.++++|...++.|.++ ++++.++..+.+++.....|++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (306)
T TIGR02056       240 QGLIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPFLVLGIFV  299 (306)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhChHhhCcchhhhhhHHHHHHHHH
Confidence            766655432  2333 35778999999999988765 55777888889999988888665

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=1.6e-41  Score=308.97  Aligned_cols=269  Identities=15%  Similarity=0.203  Sum_probs=219.1

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCccc-ccHHHHHH-HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q psy14930         20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQ-FSWIILFV-TLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRT   97 (308)
Q Consensus        20 ~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~-~~~~~~ll-~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~   97 (308)
                      |+|+|++||++++.++.|+++|.++|....+   + +++...++ +++++.+.|.++|.+|||+|+|  +|+ +++|+||
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~---~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~--~D~-~~~~~Rp   74 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERG---FPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRD--VDA-INEPQRP   74 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhC--ccc-CCCCCCC
Confidence            4688999999999999999999998833223   4 67776555 6779999999999999999985  674 6679999


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCccc-chhHHHHHHHHHHH
Q psy14930         98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTA-LGDVLILMIFGPIT  175 (308)
Q Consensus        98 l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~-lge~~v~~~~G~l~  175 (308)
                      +++|++|+++++..+..+..+++++++.+.   +  + ...++.+.+++.+++||.|| ++||++ +||+.+++.++..+
T Consensus        75 i~~G~is~~~a~~~~~~~~~~~~~l~~~l~---~--~-~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~  148 (283)
T TIGR01476        75 IPSGIISLREVRWNWLVLTVAGLLVALVLG---N--W-LIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLP  148 (283)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHH---H--H-HHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHH
Confidence            999999999999999988888877765431   1  1 11233344566799999998 999998 79999999888877


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH-
Q psy14930        176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM-  254 (308)
Q Consensus       176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~-  254 (308)
                      ...++..+ ++.++..++.+++.++++.++++.||+||+|+||++|+||+|+++|+|++++++..+...+++..+.+.. 
T Consensus       149 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~  227 (283)
T TIGR01476       149 WMAGHAIF-APLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI  227 (283)
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666554 5688888888999999999999999999999999999999999999999999999988888876654332 


Q ss_pred             -HHHHH-HHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHH
Q psy14930        255 -NHSYY-YLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLY  301 (308)
Q Consensus       255 -~~~~~-~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  301 (308)
                       ..+.+ .++.++..|..++..|.++ ++++.++..+++++.++.+|++.
T Consensus       228 ~~~~~~~~l~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (283)
T TIGR01476       228 WGQPWVATIVFLLLVAQIYNQIKLFLRDPQQNYVRYNATANPFYVLGMLA  277 (283)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHHhChHHhhHHhhhhcHHHHHHHHHH
Confidence             24443 4667788899888888665 45667788899999999999877

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.4e-40  Score=296.45  Aligned_cols=265  Identities=15%  Similarity=0.169  Sum_probs=208.9

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHh----hhhhhhhcccCCCCCCC
Q psy14930         19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVV----NTYYDYVLGIDTSRRSD   94 (308)
Q Consensus        19 ~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~----Ndy~D~~~g~D~~~~~~   94 (308)
                      +|.+++++||++|..+..|+.+|..+|   +|   ..+| .+   +++.+++|.+.|..    |||+|+++|.|++++.+
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la---~~---~~~~-~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g   70 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA---GG---EIDW-LF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGG   70 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH---CC---CCCh-HH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCC
Confidence            368999999999999999999999998   24   4555 33   33445666666665    99999999999765432


Q ss_pred             CCceecccCCHHHHHHHHHHHHHHHHH-HHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhH--HHHHH
Q psy14930         95 DRTLVDHILSESELVSLGVMLYLVSSA-GFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDV--LILMI  170 (308)
Q Consensus        95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~--~v~~~  170 (308)
                       |   +|.+|++|+++....+..++++ .++.+....+  + ....+...+++.++.||.+| |+||+|+||.  .++..
T Consensus        71 -~---~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~--~-~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f  143 (282)
T PRK13105         71 -V---EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS--W-ASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHF  143 (282)
T ss_pred             -C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHH
Confidence             1   3669999998877777666655 5555544322  1 12223334667899999999 9999999998  66667


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930        171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV  250 (308)
Q Consensus       171 ~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  250 (308)
                      +|+ .+.|.++. ++.+++..++.+.++++++.+++..||+||+|+||++|+||+|+++|+|++.+++..++..++++.+
T Consensus       144 ~~~-~v~G~~~~-~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~  221 (282)
T PRK13105        144 VSP-ALYGLVLA-GAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML  221 (282)
T ss_pred             HHH-HHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            777 66676666 7778888888999999999999999999999999999999999999999999999999999887776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCccccccHHHHHHHHHHHHHHHHHHH
Q psy14930        251 VWGMNHSYYYLLPLVTLKSAFSIEKQFR----CPDKIHLVPKLTAKLNLYFGFLYVVAV  305 (308)
Q Consensus       251 ~~~~~~~~~~ll~ll~lp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~l  305 (308)
                      ...  .+. .++.++++|++.+..|.+.    ++++.++..+++++.++.+|+++.+..
T Consensus       222 ~~~--~~~-~~l~ll~~p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~  277 (282)
T PRK13105        222 ALP--WPG-WLAAVLALPYVVNTARFWSVTDADCERANRGWRRFLWLNYVSGFLVTMLL  277 (282)
T ss_pred             HHH--hHH-HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332  222 4678899999999988755    346788999999999999999998854

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=5.6e-38  Score=288.88  Aligned_cols=274  Identities=18%  Similarity=0.240  Sum_probs=212.1

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHH------HHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWII------LFVTLLTVISVHCAGNVVNTYYDYVLGID   88 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~------~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D   88 (308)
                      .+++++.|++++||++++.++.|++.|.+.+    +   ..++..      ++..+++..+.|+++|.+|||+|++  .|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~----~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~--~D   93 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSS----G---AFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDRE--VD   93 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHc----C---CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--cc
Confidence            4567899999999999999999999988754    2   233322      3445677888999999999999985  68


Q ss_pred             CCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCccc-chhHH
Q psy14930         89 TSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTA-LGDVL  166 (308)
Q Consensus        89 ~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~-lge~~  166 (308)
                      + .++++||+++|++|++|++..+..+..+++.++..+    +  +. ...+.+.+++.+++||.|| ++||++ +||+.
T Consensus        94 ~-~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l----~--~~-~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~  165 (314)
T PRK07566         94 A-INEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL----G--PW-VFLAALLGLFLAWIYSAPPLRLKQNGWLGNYA  165 (314)
T ss_pred             c-cCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH----C--hH-HHHHHHHHHHHHHHhcCCccccccccchhhHH
Confidence            4 456899999999999999999988877777655432    2  11 2223334566789999998 999998 69999


Q ss_pred             HHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930        167 ILMIFGPITVLFAFMS-QTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       167 v~~~~G~l~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~  245 (308)
                      +++.+|..+..++++. +++..++..++.+++.+++..+++..||+||+|+||++|+||+|+++|+|++++++..+...+
T Consensus       166 vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~  245 (314)
T PRK07566        166 VGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLF  245 (314)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHH
Confidence            9999987776655444 445788888999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy14930        246 YIVFVVWG--MNHSYY-YLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT  306 (308)
Q Consensus       246 ~~~~~~~~--~~~~~~-~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  306 (308)
                      ++..+.+.  ...+.+ .++.++..|+.....+..+++++.+...+.+.+.++.+++++ .+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~  308 (314)
T PRK07566        246 QLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFYVLGMLV-TALA  308 (314)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhChhhcChhhhhhhhHHHHHHHHH-HHHH
Confidence            87664432  223343 355677888888877776655666677777877777776655 4444

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=1.2e-37  Score=290.70  Aligned_cols=274  Identities=18%  Similarity=0.189  Sum_probs=213.9

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHH------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWII------LFVTLLTVISVHCAGNVVNTYYDYVLGIDTS   90 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~------~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~   90 (308)
                      +++|.|++++||++++..++++++|.+.    .|   .++|..      .+..+++..+.+.++|.+|||+|+|  +|+ 
T Consensus        83 ~~~k~~l~L~RP~t~~~~~~~v~~G~~~----~g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~--iD~-  152 (375)
T PLN00012         83 DIWKIRLQLTKPVTWPPLVWGVLCGAAA----SG---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDRE--IDA-  152 (375)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHH----cC---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHh--hhc-
Confidence            3589999999999999999999999984    23   455543      3566778889999999999999987  684 


Q ss_pred             CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHheeccCCC-CCCcccc-hhHHH
Q psy14930         91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISP-AKMEHLAAVFFCGLSSSFLYSGCL-GLKYTAL-GDVLI  167 (308)
Q Consensus        91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~l-ge~~v  167 (308)
                      .++|+||+++|++|+++++..+..+..+++.+++.+..... ..+ ....+.+.+++.+++||.|| ++||+++ |++..
T Consensus       153 ~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~-~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~l  231 (375)
T PLN00012        153 INEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFP-IVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYAL  231 (375)
T ss_pred             cCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHH
Confidence            55689999999999999999887777767666665432211 111 12233344566799999998 8999996 99998


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHH
Q psy14930        168 LMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYI  247 (308)
Q Consensus       168 ~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~  247 (308)
                      +..+|.+++.+++ +.++++++..++.+++.+++..++++.||++|+|+|+++|+||+||++|+|++++++..+..+..+
T Consensus       232 G~~~~~lp~~~g~-a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l  310 (375)
T PLN00012        232 GASYISLPWWAGQ-ALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQL  310 (375)
T ss_pred             HHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHH
Confidence            8888877765554 668899999999999999999999999999999999999999999999999999988765555554


Q ss_pred             HHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHHH
Q psy14930        248 VFVVWGMN--HSYY-YLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLYV  302 (308)
Q Consensus       248 ~~~~~~~~--~~~~-~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  302 (308)
                      ..+.+...  .+.+ .++.++.+|......+.+. ++.+.++..+.+++.++.+|++..
T Consensus       311 ~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~a~~~~~~~~l~~  369 (375)
T PLN00012        311 SVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPFLVFGLLVT  369 (375)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433322  2233 3556778898888877654 557778888999999999997763

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.7e-34  Score=261.91  Aligned_cols=275  Identities=18%  Similarity=0.164  Sum_probs=209.9

Q ss_pred             cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCC
Q psy14930         18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDR   96 (308)
Q Consensus        18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r   96 (308)
                      ++|+|+|++||+.......|.+.|.++|..  +   .+++..+++.+++.++.++++|.+|||+|+|  +|+. +|+++|
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~--~---~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~--iD~~~~Rt~~R   73 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAK--H---GVSWLPLIPLLIGGTLASGGSAAFNHGIERD--IDKVMSRTSKR   73 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhcc--C---CCCHHHHHHHHHHHHHHHHHHHHHhchHhcC--CCCCCCCCCCC
Confidence            478999999999999999999999998842  3   5788888888999999999999999999975  8875 567999


Q ss_pred             ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHHHH
Q psy14930         97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPITV  176 (308)
Q Consensus        97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l~~  176 (308)
                      |+++|++|++|+..++..+.++++.++..+  ..+   .......++.....+.||.  ++||++++|..++...|..++
T Consensus        74 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~~--l~~---~~~~~~~~~~~~~~~~Yt~--~lKr~~~~~~~v~~~~g~~~~  146 (279)
T PRK12869         74 PTPVGLVNRKEALAVGSALSALGTALGFLL--LGP---LTALFIALGWFFYAVVYTI--WLKPRTWLNIVIGGFAGNAAA  146 (279)
T ss_pred             CcCCCCcCHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHhhhCc--ccccCChHHHHHHHHHHHHHH
Confidence            999999999999999888877777665431  211   1111223444567788995  589999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-HH
Q psy14930        177 LFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-MN  255 (308)
Q Consensus       177 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-~~  255 (308)
                      +++|++++++.++.+++.+++.++|+.++.+.++++|+|+|+++|+||+|+++|+|++++....+..+......... ..
T Consensus       147 l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  226 (279)
T PRK12869        147 LAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYLYY  226 (279)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999887666554443332222 22


Q ss_pred             HHHHHH-HH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        256 HSYYYL-LP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       256 ~~~~~l-l~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                      .+++++ .. +......+...+..+++++  +..++..|.+.....++.+.+++|
T Consensus       227 ~g~~y~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~f~~s~~~l~~~~~~~~~~  279 (279)
T PRK12869        227 IGLIGLILVAILSAALMATSIRALLNPTK--EEAWKMFKASSPYLALFLLALIIS  279 (279)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333333 22 2344555566666665322  223456666666666665666543

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.2e-34  Score=265.58  Aligned_cols=229  Identities=20%  Similarity=0.117  Sum_probs=176.3

Q ss_pred             hhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHH----hhhhhhhhccc
Q psy14930         12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNV----VNTYYDYVLGI   87 (308)
Q Consensus        12 l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~----~Ndy~D~~~g~   87 (308)
                      .++.++.+++|+|.+||++...+.+++..+..++....+  ...+.. .+...++.++.+.++|+    +|||+|+|  +
T Consensus         6 ~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~--~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~--i   80 (308)
T PRK12887          6 LQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASS--NTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIE--I   80 (308)
T ss_pred             hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc--chhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHH--H
Confidence            556677799999999999999999999988877643222  012222 45556666666777777    99999998  6


Q ss_pred             CCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchh-H
Q psy14930         88 DTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGD-V  165 (308)
Q Consensus        88 D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge-~  165 (308)
                      |+ .|+|+||+++|++|+++++.+..++.++++.++..    .+.  . ...+.+.+.+++++||.|| |+||+|++| +
T Consensus        81 D~-inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~----~~~--~-~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~  152 (308)
T PRK12887         81 DR-INKPHLPLAAGEFSRRQGQRIVIITGILALILAAL----LGP--W-LLITVGISLLIGTAYSLPPIRLKRFPLLAAL  152 (308)
T ss_pred             Hh-cCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHH----HhH--H-HHHHHHHHHHHHHHHcCCchhhcccchhHHH
Confidence            84 57799999999999999999888777766665532    221  1 2233345677899999999 999999877 4


Q ss_pred             HHHHHHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHH
Q psy14930        166 LILMIFGPITVLFAFMS------QTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYA  239 (308)
Q Consensus       166 ~v~~~~G~l~~~~~~~~------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~  239 (308)
                      .++...|.....+.++.      +.++++...++.+++.++++.++++.||++|+|+||+.|+||+|+++|+|++.+++.
T Consensus       153 ~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~  232 (308)
T PRK12887        153 CIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC  232 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHH
Confidence            45555665555554331      233566777888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy14930        240 FLLFIPYIVFVVWG  253 (308)
Q Consensus       240 ~l~~~~~~~~~~~~  253 (308)
                      .+..++|+..+...
T Consensus       233 ~ll~~~y~~~i~~~  246 (308)
T PRK12887        233 WVLTACYLGMIAVG  246 (308)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998776554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3.5e-34  Score=260.80  Aligned_cols=275  Identities=19%  Similarity=0.250  Sum_probs=202.6

Q ss_pred             cccHHHHHHhhchhH---HHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930         16 QEKLSSYLLALRPWS---LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R   91 (308)
Q Consensus        16 ~~~~~~~l~~~Rp~~---l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~   91 (308)
                      ++++++|+|++||+.   ...+..|++.|.++|... .   .+++..+++++++++++|.++|.+|||+|+|  +|++ +
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~---~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~--iD~~~~   77 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHS-L---LPDISLLVLFIIGSVLMRSAGCIINDIFDRK--IDKHVA   77 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCc-c---CCcHHHHHHHHHHHHHHHHHHHHHHhHHHhh--hccCCC
Confidence            346899999998874   456789999999998642 1   3788888999999999999999999999986  6864 5


Q ss_pred             CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHH
Q psy14930         92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIF  171 (308)
Q Consensus        92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~  171 (308)
                      |+++||+++|++|++|+..++..+.++++.+..    ..+.  . ...+.+.+.+..+.||..||  +++++++..++.+
T Consensus        78 Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~----~~~~--~-~~~~~~~~~~~~~~Y~~~Kr--~~~~~~~~~g~~~  148 (285)
T PRK12847         78 RTKNRPLASGALSVKQALILLFILLLIALVILL----LLNK--T-TIYLSFIAVILIVLYPLMKR--FFYWPQLFLGFTF  148 (285)
T ss_pred             cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH----HHhH--H-HHHHHHHHHHHHHhcccccc--CCcccHHHHHHHH
Confidence            678999999999999999988887766654432    2221  1 12223344556788985322  4468999988888


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH
Q psy14930        172 GPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV  251 (308)
Q Consensus       172 G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  251 (308)
                      +. .++++|.+++++.++++++.+++.++|+.+++.+++++|+|+|+++|+||+|+++|+|++.+.+.......++..+.
T Consensus       149 ~~-~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~  227 (285)
T PRK12847        149 NM-GILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL  227 (285)
T ss_pred             HH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            75 55677888999999999999999999999999999999999999999999999999999999888776666655443


Q ss_pred             HHH-H-HHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHhC
Q psy14930        252 WGM-N-HSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTLA  308 (308)
Q Consensus       252 ~~~-~-~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  308 (308)
                      ... . .+.+++...+..-......+..+. ++.++ -.+..+.+...+.++.++++++
T Consensus       228 ~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~f~~~~~~~~l~~~~~~~~  284 (285)
T PRK12847        228 GIISSLHNIFYLAILAAAGIFYYQYKLLDF-DNPAN-CMYAFKANHYVGLLLFLGAVLG  284 (285)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHhCC-CCHHH-HHHHHHHhHHHHHHHHHHHHhC
Confidence            322 2 234443333333222222333332 33333 3345788888888888887753

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=5e-34  Score=263.03  Aligned_cols=260  Identities=18%  Similarity=0.206  Sum_probs=189.0

Q ss_pred             hccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHH--HHHHHHHHHHHHHHHHhhhhhhhhcccCCCC
Q psy14930         14 MLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIIL--FVTLLTVISVHCAGNVVNTYYDYVLGIDTSR   91 (308)
Q Consensus        14 ~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~--ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~   91 (308)
                      +.++++|+|+|++||++++ ...|+.+|..+|..  +..+..+...+  ...++...+...++|.+|||+|++  .|+ .
T Consensus         7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g--~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~--~D~-~   80 (331)
T PRK12392          7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASG--AMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLE--LDR-V   80 (331)
T ss_pred             chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcC--CCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeec--ccc-c
Confidence            3566799999999999887 88899999998752  11012222221  112333344456789999999997  574 5


Q ss_pred             CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHheeccCCC-CCCcccc-hhHHHH
Q psy14930         92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPA-KMEHLAAVFFCGLSSSFLYSGCL-GLKYTAL-GDVLIL  168 (308)
Q Consensus        92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~l-ge~~v~  168 (308)
                      ++|+||+++|++|++|++..+..+..+++.+++++....+. ......+..+.++++++.||.|| ++||+++ |++.++
T Consensus        81 n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vG  160 (331)
T PRK12392         81 NEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVG  160 (331)
T ss_pred             CCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHH
Confidence            56779999999999999999999988888888776544321 00111122234567899999988 8999985 999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHH
Q psy14930        169 MIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIV  248 (308)
Q Consensus       169 ~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~  248 (308)
                      +.+|..+... +.+..+++++..++++.+.++++.+.++.||++|+|+|++.|+||+|+++|+|++.++......+..+.
T Consensus       161 l~~~~~~~~~-~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~  239 (331)
T PRK12392        161 FSYGFITFLS-ANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAV  239 (331)
T ss_pred             HHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHH
Confidence            9998766544 445667888888888888999999999999999999999999999999999999998877666555555


Q ss_pred             HHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhcCC
Q psy14930        249 FVVWGM--NHSY-YYLLPLVTLKSAFSIEKQFRCP  280 (308)
Q Consensus       249 ~~~~~~--~~~~-~~ll~ll~lp~~~~~~~~~~~~  280 (308)
                      ++....  ..+. ++...++..+..+.+.+..|+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l~r~p  274 (331)
T PRK12392        240 FAWLAWSWGFTVLMYFILVGLVLNIVIQIQLYRDP  274 (331)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            543332  2333 3344445566666666666654

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=2.6e-33  Score=256.12  Aligned_cols=218  Identities=21%  Similarity=0.235  Sum_probs=178.5

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS   93 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~   93 (308)
                      .++++|+|+|++||+.......|+++|.++|..  +   .+|+..++++++++++.++++|.+|||+|+|  +|+. +|+
T Consensus         6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~--~---~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~--iD~~~~Rt   78 (296)
T PRK04375          6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPP--G---VPPLLLLLLTLLGIALVAGAAGALNNYIDRD--IDAKMERT   78 (296)
T ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cCCCCCcc
Confidence            456799999999999999999999999999853  3   5788888889999999999999999999975  7875 567


Q ss_pred             CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHH
Q psy14930         94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGP  173 (308)
Q Consensus        94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~  173 (308)
                      ++||+++|++|++|++.++..+..++++++..+.  ..   ....+..++.....+.||.  ++||++.|+..++...|.
T Consensus        79 ~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~--~~---~~~~l~~~~~~~~~~~Ys~--~lKr~~~~~~~v~~~~g~  151 (296)
T PRK04375         79 KNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV--NP---LAAWLTLAGIFFYVVVYTL--WLKRRTPQNIVIGGAAGA  151 (296)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH--hH---HHHHHHHHHHHHHHHHhcc--chhcCCccchHHHHHHHH
Confidence            9999999999999999998888777666543321  11   0111112222224567885  599999999999888888


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930        174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~  246 (308)
                      .+++++|+++++++++.+++++++..+|+.+.+..++++|+|+|+++|.||+|+++|+|++++..........
T Consensus       152 ~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~  224 (296)
T PRK04375        152 MPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLV  224 (296)
T ss_pred             hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999999999999999998886655444333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=2.5e-33  Score=254.96  Aligned_cols=271  Identities=16%  Similarity=0.143  Sum_probs=199.1

Q ss_pred             cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCC
Q psy14930         18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDR   96 (308)
Q Consensus        18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r   96 (308)
                      ++|+|+|++||+....+......|..+|..  +   ..++..++++++++++++.++|.+|||+|+|  .|+. +|+++|
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~--~---~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~--~D~~~~Rt~~R   73 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAK--G---LPGLKTLILILIAAVSARTAAMAFNRIIDRA--IDARNPRTKNR   73 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccCCC
Confidence            478999999999988887777778888753  3   5788888999999999999999999999987  6764 568999


Q ss_pred             ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHHHHHHHH
Q psy14930         97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILMIFGPIT  175 (308)
Q Consensus        97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~~~G~l~  175 (308)
                      |+++|++|+++++.++.++.+.+.+.+..+    +.  . ...+...+....+.|+.   +|++ +++++..++.+|. +
T Consensus        74 Pl~sG~is~~~a~~~~~~~~~~~~~~~~~l----~~--~-~~~l~~~~~~~~~~Y~~---~Kr~~~~~~~~~g~~~~~-~  142 (282)
T TIGR01475        74 PLVSGLISKKEARTMIILSLALFLSASYFL----NP--L-AFILSPLVLLVLIIYPY---TKRFTFLCHYVLGSTYGL-A  142 (282)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH----hH--H-HHHHHHHHHHHHHHHhh---HhccccccHHHHHHHHHH-H
Confidence            999999999999998876654444333221    11  1 11122223445678874   5655 5899998888875 5


Q ss_pred             HHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930        176 VLFAFMSQTGRWE--WATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG  253 (308)
Q Consensus       176 ~~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~  253 (308)
                      +++++.+++++.+  ..+++++++..+|+.+++++|++||+|+|+++|+||+|+++|+|++++.+..+..+++.......
T Consensus       143 ~~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       143 PLAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             HHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666888888888  77888999999999999999999999999999999999999999999988887777776554433


Q ss_pred             H--HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        254 M--NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       254 ~--~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      .  ..+. +....++.........+..+. ++.+...+.....+...++++.+|+++
T Consensus       223 ~~~~~g~~y~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~ff~~~~~l~~~~~~g~~~  278 (282)
T TIGR01475       223 FYVGNGYIALLALILIGLILAYEHYIVDP-GDQSKIQRAFFYANGFLSITFLIGVII  278 (282)
T ss_pred             HHhhCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2  1233 322333333444445554443 333333344577788888888888764

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-33  Score=253.07  Aligned_cols=280  Identities=19%  Similarity=0.157  Sum_probs=195.0

Q ss_pred             cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccc-CCCCC-
Q psy14930         16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFV-TLLTVISVHCAGNVVNTYYDYVLGI-DTSRR-   92 (308)
Q Consensus        16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll-~~l~~~~~~~~~n~~Ndy~D~~~g~-D~~~~-   92 (308)
                      ++++|+|++++||++++.+..++..|.++|....|   .+++...++ ++++.+.. .++|.+|||+|+|.|. |.+++ 
T Consensus         2 ~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g---~~~~~~~~l~~l~~~l~~-~ag~~iND~~D~~~D~~~v~rtm   77 (297)
T PRK12871          2 KETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYG---GFSWELTIKAALIGLFGF-EAGFVLNDYVDRKRDRLDVENTL   77 (297)
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHHHHH-HHHHHHhhHHHHhcCcchHhhhh
Confidence            35689999999999999999999999999864335   678876664 45555555 4568999999999764 32222 


Q ss_pred             ------CCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHH
Q psy14930         93 ------SDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVL  166 (308)
Q Consensus        93 ------~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~  166 (308)
                            +++||+++|++|++|++.++..+..+++.++..+.....  + ....+.+.+.+.++.|+.+||..+.|.+++.
T Consensus        78 ~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~--~-~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~  154 (297)
T PRK12871         78 TRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNS--L-YVFVIMLYSYGIEAFYQVKKRNQKYPVAQLL  154 (297)
T ss_pred             hccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHhcccccccccHHHHH
Confidence                  268999999999999999999888887776654433221  1 1112223345678889865544556777755


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930        167 ILMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       167 v~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~  246 (308)
                      -++.++. +++.++ +++++.+...++++.+.++|+.+.+.+||++|+|+|+++|+||+|+++|++++++....+..+..
T Consensus       155 G~~~~~~-~~~~g~-~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~  232 (297)
T PRK12871        155 GRTDFTL-FPAAGY-LCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHF  232 (297)
T ss_pred             HHHHHHH-HHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHH
Confidence            4455555 344444 56888998889999999999999999999999999999999999999999999987776666655


Q ss_pred             HHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy14930        247 IVFVVWGMNHS-Y-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT  306 (308)
Q Consensus       247 ~~~~~~~~~~~-~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  306 (308)
                      +..+......+ . +..+.+...|+...+.+..+++ +.+.-.+ ..+......+.+...++
T Consensus       233 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~f~~~~~~~~~~~~~~~  292 (297)
T PRK12871        233 LAAIFFLRELGPIALYGFLAGFVLLAGANLYLWKEK-SQDAGMK-ILPLYHASLVIYAVSII  292 (297)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            44443333332 2 2333355667777777777653 3333332 34555555555555554

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=5e-33  Score=255.45  Aligned_cols=278  Identities=20%  Similarity=0.136  Sum_probs=199.6

Q ss_pred             ccccHHHHHHhh---chhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930         15 LQEKLSSYLLAL---RPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-   90 (308)
Q Consensus        15 ~~~~~~~~l~~~---Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-   90 (308)
                      .+.++++|+|++   ||+.....+.|++.|.++|....+..+..++..+++++++++++|+++|.+|||+|++  +|+. 
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~--iD~~~  103 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRD--IDAKV  103 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCC
Confidence            667899999999   8999999999999999999653110114677788889999999999999999999965  8864 


Q ss_pred             CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCc-ccchhHHHHH
Q psy14930         91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKY-TALGDVLILM  169 (308)
Q Consensus        91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~-~~lge~~v~~  169 (308)
                      +|+++||+++|++|++|+...+..+..+++.+    .+..+  +. ...+.+.+++..+.||.   .|| +++++...++
T Consensus       104 ~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l----~~~~~--~~-~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~~Gl  173 (314)
T PRK12878        104 ARTRSRPLPSGQVSRKQAKVFMVLQALVGLAV----LLQFN--WF-AIALGIASLAIVAAYPF---MKRITWWPQFFLGL  173 (314)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHH----HHHHh--HH-HHHHHHHHHHHHHHHHH---HHhcCCcchHHHHH
Confidence            67889999999999999987776665544433    22222  11 22333445566888985   343 3456665566


Q ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHH
Q psy14930        170 IFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF  249 (308)
Q Consensus       170 ~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~  249 (308)
                      .++..+ +.+|++++|++++.++++.+...+|......+++++|+|+|+++|+||+|+++|++++++.+........+..
T Consensus       174 ~~~~~~-l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~  252 (314)
T PRK12878        174 AFSWGA-LMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMG  252 (314)
T ss_pred             HHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHH
Confidence            555434 3458899999999888888889999999999999999999999999999999999999998855554444333


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        250 VVWGM-NHSYYYLLPLVTLKSAFSIEKQFR-CPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       250 ~~~~~-~~~~~~ll~ll~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      +.... ..+++++++++..+... ..+..+ ++++.+ ..++..+.+...+.++.+++++
T Consensus       253 l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~-~~~~~F~~n~~~~~ll~~~l~~  310 (314)
T PRK12878        253 LAFWLAGVPLLALLGLLAAAAHL-AWQIARLDIDDPD-QCLRLFKSNRDAGLLIFLGLVV  310 (314)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHH-HHHHHHcccCChH-HHHHHHHHhHHHHHHHHHHHHH
Confidence            32222 33455555555554442 222222 122222 2466888889899888888765

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=4.2e-33  Score=253.06  Aligned_cols=264  Identities=18%  Similarity=0.250  Sum_probs=192.5

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDR   96 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r   96 (308)
                      |++|+|+|++||+....+..|...|..++..  +   ..++..++++++++++.+.++|.+|||+|+|  +|+ .++|+|
T Consensus         1 m~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~--~---~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~--iD~-~~~~~R   72 (279)
T PRK09573          1 MSIKAYFELIRPKNCIGASIGAIIGYLIASN--F---KIDLKGIILAALVVFLVCAGGNVINDIYDIE--IDK-INKPER   72 (279)
T ss_pred             CCHHHHHHHHhHhHHHHHHHHHHHHHHHHcc--C---CcchHHHHHHHHHHHHHHHHHHHHHhhcccc--ccc-ccCCCC
Confidence            3589999999999999999999999998853  3   4578888899999999999999999999997  685 445899


Q ss_pred             ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHH
Q psy14930         97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPIT  175 (308)
Q Consensus        97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~  175 (308)
                      |+++|++|++|++.++..+..+++.++..+   +.   . ...+.+.+....+.||.  ++|+++ +||+.++..+|..+
T Consensus        73 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l---~~---~-~~~l~~~~~~~~~~Ys~--~lKr~~~~~~~~vg~~~G~~~  143 (279)
T PRK09573         73 PIPSGRISLKEAKIFSITLFIVGLILSIFI---NI---Y-AFLIALLNSILLYLYAK--DLKKTGLIGNLIVAYLTGLSF  143 (279)
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHH
Confidence            999999999999999998888777665432   11   1 12223334556788985  478777 59999999999887


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-H
Q psy14930        176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-M  254 (308)
Q Consensus       176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-~  254 (308)
                      +.+..+.++   +...+++.....+|+.+.+..||.+|+|+|+++|+||+|+++|+|++.++................ .
T Consensus       144 ~~g~~~~~~---~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK09573        144 IFGGLAVFN---VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL  220 (279)
T ss_pred             HHHHHHHcc---chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766655543   234555566677888899999999999999999999999999999999988766655554443222 1


Q ss_pred             H-HHHHHHH--HHHHHHHHHHHHHHhcCCc-cccccHHHHHHHHHHHHHH
Q psy14930        255 N-HSYYYLL--PLVTLKSAFSIEKQFRCPD-KIHLVPKLTAKLNLYFGFL  300 (308)
Q Consensus       255 ~-~~~~~ll--~ll~lp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  300 (308)
                      . .+.+++.  .....++.+...+..++++ +.....++..|..+..|++
T Consensus       221 ~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~~  270 (279)
T PRK09573        221 GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMILGLI  270 (279)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1 2333332  2334566666666666532 1222333455666666554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=249.67  Aligned_cols=274  Identities=16%  Similarity=0.210  Sum_probs=196.1

Q ss_pred             cHHHHHHhhchhHHHHHHHHHHHHHHHHhhh-CCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930         18 KLSSYLLALRPWSLSASLIPTLLGCALAVKL-PIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD   95 (308)
Q Consensus        18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~-~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~   95 (308)
                      |+|+++|.+||+.-..+..-.+.|...+... .|   .+++..+++.++++++++.++|.+|||+|++  +|+. +|+++
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~--iD~~~~RT~~   75 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDG---SVHWADLLLVTVAMVGARTFAMAANRIIDRE--IDARNPRTAG   75 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhC--CCCCCCCCCC
Confidence            3789999999987666554445555555422 24   6788889999999999999999999999975  8875 57899


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPIT  175 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l~  175 (308)
                      ||+++|++|++|++.++..+++++..++..+   .+  .  ...+...++...+.|+..  .++++++++..++.++. +
T Consensus        76 RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l---~~--~--~~~l~~~~~~~~~~Y~~~--Kr~t~~~~~~lg~~~~~-~  145 (284)
T PRK12888         76 RELVTGAVSVRTAWTGALVALAVFLGAAALL---NP--L--CLALAPLAVAPLVVYPYA--KRFTNFPHAILGLAQAV-G  145 (284)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hH--H--HHHHHHHHHHHHHHHHHh--hcccchhhHHHHHHHHH-H
Confidence            9999999999999988776654433332211   11  1  111222233345567531  23446789988888665 4


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH-
Q psy14930        176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM-  254 (308)
Q Consensus       176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~-  254 (308)
                      ++++|++++++.++++++.+++.++|+.+.+++|++||+|+|+++|+||+|+++|+|++.+++..+....++....... 
T Consensus       146 ~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~  225 (284)
T PRK12888        146 PVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA  225 (284)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5577889999999999999999999999999999999999999999999999999999998887777666655544332 


Q ss_pred             -HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        255 -NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       255 -~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                       ..+. +.....++......+.+..+ +++..+..+...+.|...|+++.+++++
T Consensus       226 ~~~~~~y~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~ff~~n~~ig~~~~~~~~~  279 (284)
T PRK12888        226 VGFGALWWIGLAITAGAFAYEHAIVS-PTDLSRVNRAFFTANGFVGIALFGFALL  279 (284)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence             2233 33223344444444444333 3555566666667888899988888765

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=250.27  Aligned_cols=266  Identities=21%  Similarity=0.222  Sum_probs=193.0

Q ss_pred             cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q psy14930         16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDD   95 (308)
Q Consensus        16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~   95 (308)
                      |+++++|++++||+....+..+.++|.++|..      .+++..+++.++++++.+.++|.+|||+|+|  .|+.. +|+
T Consensus         1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~------~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~--~D~~~-r~~   71 (279)
T PRK12884          1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALG------GLPLDEALLGFLTAFFASGSANALNDYFDYE--VDRIN-RPD   71 (279)
T ss_pred             ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC------CCchHHHHHHHHHHHHHHHHHHHHHhhhhHh--hhhcc-CCC
Confidence            45799999999999999999999999988842      3445667888899999999999999999998  57533 589


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccc-hhHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTAL-GDVLILMIFGPI  174 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~l-ge~~v~~~~G~l  174 (308)
                      ||+++|++|+++++..+.++..++++++..+   +.   . ...+.+.+...++.||.  ++|++++ ||+.+++.+|..
T Consensus        72 Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l---~~---~-~~~~~~~~~~~~~~Ys~--~lK~~~~~~~~~~~~~~~~~  142 (279)
T PRK12884         72 RPIPSGRISRREALLLAILLFILGLIAAYLI---SP---L-AFLVVILVSVLGILYNW--KLKEYGLIGNLYVAFLTGMT  142 (279)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHH--hhccccchhHHHHHHHHHHH
Confidence            9999999999999999888877777655432   11   1 12222334566889986  5889985 999999888865


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-  253 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-  253 (308)
                      ++.++.+. ++ .+...+.++....+|+.+.++.||++|+|+|+++|+||+|+++|+|++++++..+....++...... 
T Consensus       143 ~~~g~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        143 FIFGGIAV-GE-LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             HHHHHHHh-CC-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554433 33 3336677777888999999999999999999999999999999999999988887777776544322 


Q ss_pred             H-HHHH-HHHHHHHHHHHHHHH-HHHhcCCccccccHHHHHHHHHHHHHHHHHH
Q psy14930        254 M-NHSY-YYLLPLVTLKSAFSI-EKQFRCPDKIHLVPKLTAKLNLYFGFLYVVA  304 (308)
Q Consensus       254 ~-~~~~-~~ll~ll~lp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  304 (308)
                      . ..++ +....+++.+..... .+..+++ +.++  .+..+.+...++++.+.
T Consensus       221 ~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~  271 (279)
T PRK12884        221 FGIFNILYLAPVLVADLIFLYSAYSLLRSQ-DRET--IRKVRKITLTAMLLALV  271 (279)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhcCC-CHHH--HHHHHHHHHHHHHHHHH
Confidence            2 2344 333344444444443 4555543 2222  22346666666555443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=250.66  Aligned_cols=275  Identities=19%  Similarity=0.214  Sum_probs=197.9

Q ss_pred             ccccHHHHHHhhchhH---HHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930         15 LQEKLSSYLLALRPWS---LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-   90 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~---l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-   90 (308)
                      .++++++|+|++||+.   ......|.++|..+|..  +   ..++..+++.++++++++.++|.+|||+|+|  +|++ 
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~--~---~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~--iD~~~   77 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAH--G---LPPLPLVGIIILGALATSAAGCVVNDLWDRD--IDPQV   77 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcc--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhc--cCCCC
Confidence            4457899999998766   34456899999998853  4   5678888889999999999999999999976  8864 


Q ss_pred             CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHH
Q psy14930         91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMI  170 (308)
Q Consensus        91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~  170 (308)
                      +|+++||+++|++|++|+..++..+.+++..++..+   ++   . ...+.+++....+.||..  .++++++++..++.
T Consensus        78 ~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l---~~---~-~~~l~~~~~~~~~~Y~~~--KR~t~~~~~~lg~~  148 (290)
T PRK12870         78 ERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL---NP---L-SFWLCVAAVPVIFLYPLA--KRVFPVPQLVLAIA  148 (290)
T ss_pred             CcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHhhhh--hhccccceeeehHH
Confidence            567799999999999999998888777666554332   11   1 112233445567788752  23446788888888


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930        171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV  250 (308)
Q Consensus       171 ~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  250 (308)
                      +|. +++++|++++++.++.+++++++..+|+.+.+++++++|+|+|+++|.||+|+++|+|++.++... ..+......
T Consensus       149 ~~~-~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~~l~  226 (290)
T PRK12870        149 WGF-AVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVGFLA  226 (290)
T ss_pred             HHh-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHHHHH
Confidence            875 567778889999999998999999999999999999999999999999999999999998876653 332222222


Q ss_pred             HHHH--HHHHHHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        251 VWGM--NHSYYYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       251 ~~~~--~~~~~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ....  ..+++++.. .+.........+.++.+.+..+...+..+.|...|+++.+++++
T Consensus       227 ~~~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g~~~~~~~~~  286 (290)
T PRK12870        227 ILGVLLELHLPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIGFLLLAGMIL  286 (290)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2222  233333222 23333333333444332222234567789999999988888765

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=1.6e-32  Score=249.37  Aligned_cols=213  Identities=21%  Similarity=0.242  Sum_probs=173.8

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCce
Q psy14930         20 SSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTL   98 (308)
Q Consensus        20 ~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l   98 (308)
                      |+|+|++||+.+..+..|+..|.++|... .   .+++..++++++++++.++++|.+|||+|+|  +|+. +|+++||+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~-~---~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~--iD~~~~Rt~~Rpl   74 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGG-A---LVNPPLLLLTLLGTTLAAASANAFNMYIDRD--IDKKMKRTRNRPL   74 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHHhhcccC--cCCCCCCCCCCCC
Confidence            46899999999999999999999998531 1   3788888999999999999999999999975  7875 57799999


Q ss_pred             ecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-HheeccCCCCCCcccchhHHHHHHHHHHHHH
Q psy14930         99 VDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLS-SSFLYSGCLGLKYTALGDVLILMIFGPITVL  177 (308)
Q Consensus        99 ~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~Ys~~p~lk~~~lge~~v~~~~G~l~~~  177 (308)
                      ++|++|++|+..++..+.++++.+...  ..+.   . ...+.+.+++ ..+.||.  ++|+++++|..++...|.++++
T Consensus        75 ~sG~is~~~a~~~~~~~~~~g~~il~~--~~~~---~-~~~l~~~~~~~~~~~Yt~--~lKr~~~~~~~v~~~~g~~~~l  146 (280)
T TIGR01473        75 VTGRISPREALAFGLLLGVLGVAILAA--FVNP---L-AALLGLFGIFFYVIVYTI--WLKRRTPQNTVIGGFAGAVPPL  146 (280)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHH--HHhH---H-HHHHHHHHHHHHHhhcCh--hhccCCchhHHHHHHHHHHHHH
Confidence            999999999999988887766553211  1221   1 1122223333 4788995  4899999999999899999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHH
Q psy14930        178 FAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       178 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~  246 (308)
                      ++|+++++++++.+++++++..+|+.........+|+|+||++|+||+|+++|+|++.+..........
T Consensus       147 ~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~  215 (280)
T TIGR01473       147 IGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALL  215 (280)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHH
Confidence            999999999999998899999999999887888999999999999999999999999886665544433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=3.6e-32  Score=247.07  Aligned_cols=272  Identities=24%  Similarity=0.242  Sum_probs=194.9

Q ss_pred             cccHHHHHHhhc---hhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930         16 QEKLSSYLLALR---PWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R   91 (308)
Q Consensus        16 ~~~~~~~l~~~R---p~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~   91 (308)
                      ++++++|+|++|   |........|.+.|..+|..  +   ..++..+++.+++.++.++++|.+|||+|+|  +|+. +
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~--~---~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~--iD~~~~   74 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAAD--G---IPDLWVLVVFVLGVFLMRAAGCVINDYADRD--FDGHVK   74 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhc--cCCCCC
Confidence            456899999997   66777788899999998853  3   4567777888889999999999999999986  7864 5


Q ss_pred             CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHH
Q psy14930         92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIF  171 (308)
Q Consensus        92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~  171 (308)
                      |+++||+++|++|++|+..++..++.+++.++..+   ..   . ...+.+.+.+..+.|+.  ..++++++++..++.+
T Consensus        75 Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l---~~---~-~~~l~~~~~~~~~~Y~~--~Kr~~~~~~~~~g~~~  145 (282)
T PRK12848         75 RTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL---NT---L-TIWLSVAALALAWIYPF--MKRYTHLPQVVLGAAF  145 (282)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHh--HHhcCcccHHHHHHHH
Confidence            67899999999999999999988887766543322   11   1 12233344556788863  2345578899888888


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH
Q psy14930        172 GPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV  251 (308)
Q Consensus       172 G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  251 (308)
                      |..+ ..+|.++++++++.+++++++..+|+....+.++++|+|+|+++|+||+|+++|+|++.+...... +.......
T Consensus       146 g~~~-~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~-~~~~~~~~  223 (282)
T PRK12848        146 GWGI-PMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQL-ATLALLAW  223 (282)
T ss_pred             HHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHH-HHHHHHHH
Confidence            8644 456888999999999999999999999999999999999999999999999999998887664333 22222222


Q ss_pred             HH--HHHHHHHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        252 WG--MNHSYYYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       252 ~~--~~~~~~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ..  ...+.+++.. .+.........+..++ ++.++.. +..+.+...|.++.+++++
T Consensus       224 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~F~~n~~~g~~l~~~~~~  280 (282)
T PRK12848        224 AGWLLGLGWAYYWGLLVAAALFVYQQKLIRD-REREACF-KAFLNNNWVGLVLFAGIAA  280 (282)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHH-HHHHhCcHHHHHHHHHHHH
Confidence            22  1223333322 2222222333344433 3333333 4556688899888888765

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=5.8e-32  Score=245.42  Aligned_cols=264  Identities=21%  Similarity=0.258  Sum_probs=182.2

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDR   96 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r   96 (308)
                      |++|+|+|++||++++.+..+.+.|.+++..  +   ..++...++.+++.++.+.++|.+|||+|+|  .|+ .++|+|
T Consensus         1 m~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~--~---~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~--~D~-~n~~~R   72 (277)
T PRK12883          1 MELKAFIEITRPHNCILAGIVGILGSLVALG--G---IPPIKTLILIFLVVYLGCSGGNTINDYFDYE--IDK-INRPNR   72 (277)
T ss_pred             CCHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--C---CCcHHHHHHHHHHHHHHHHHHhHHHhhhhHh--ccc-cCCCCC
Confidence            4589999999999999999999999988742  2   2345556777888999999999999999998  675 355899


Q ss_pred             ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHH
Q psy14930         97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPIT  175 (308)
Q Consensus        97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~  175 (308)
                      |+++|++|+++++.++..+.++++.++..    .+  +. ...+.+.+...++.||.  ++|+++ +||+.++..+|..+
T Consensus        73 pl~sG~is~~~a~~~~~~l~~~g~~l~~~----~~--~~-~~~~~~~~~~~~~~Y~~--~~k~~~~lg~~~vg~~~g~~~  143 (277)
T PRK12883         73 PLPRGAMSRKAALYYSLLLFAVGLALAYL----IN--IE-AFLFALGAYVLMFLYAW--KLKPLPFIGNVVVALLTGATP  143 (277)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHH----HH--HH-HHHHHHHHHHHHHHHhh--cccCCcchhhHHHHHHHHHHH
Confidence            99999999999999888887766554432    22  11 12223334566889987  467766 69999999999887


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH-HHH
Q psy14930        176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV-WGM  254 (308)
Q Consensus       176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~-~~~  254 (308)
                      +.+.. . .+++++..+.... .+++..+..+.||+||+|+|+++|+||+|+++|+|++++............... ...
T Consensus       144 ~~g~~-a-~~~~~~~~~~~~~-~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~  220 (277)
T PRK12883        144 IYGAI-A-VGRIGLAGYLAIC-AFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKA  220 (277)
T ss_pred             HHHHH-H-hccccHHHHHHHH-HHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65543 3 3667776554433 556667888999999999999999999999999999998776554322222111 111


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhcCCcccc-ccHHHHHHHHHHHHHH
Q psy14930        255 NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIH-LVPKLTAKLNLYFGFL  300 (308)
Q Consensus       255 ~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  300 (308)
                      ..+. +....++..++.+...+..+++++.+ ...++..|..+..|++
T Consensus       221 ~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (277)
T PRK12883        221 GIGLGYLPIIIVDAIILYAAYLVLRNPDRETAHKGQKLLKIAIFLAVI  268 (277)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHH
Confidence            1122 22223355666666666666532211 1123455555555544

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.4e-32  Score=245.17  Aligned_cols=272  Identities=19%  Similarity=0.126  Sum_probs=192.4

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD   95 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~   95 (308)
                      +++|+|+|++||+.......+.+.|..+|..  |   ..++...++..+++++.++++|.+|||+|++  +|+. +|+++
T Consensus         6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~--~---~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~--iD~~~~RT~~   78 (291)
T PRK12886          6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAAL--G---LPGASQLDWILMAMVGARTAAMGFNRLIDAE--IDARNPRTAG   78 (291)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHHhcc--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cCCCCCCCCC
Confidence            4589999999999888888888999998853  3   4567778888999999999999999999985  7864 56789


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCc-ccchhHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKY-TALGDVLILMIFGPI  174 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~-~~lge~~v~~~~G~l  174 (308)
                      ||+++|++|++|+..+...+.+.    ++.+....+.  . ...+.+.+......||.   .|+ ++++++..++.++. 
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~----~~~l~~~~~~--~-~~~l~~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~~-  147 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLL----MLFAAWFLNP--L-CLYLSPPALFFLLLYSY---CKRFTALAHVVLGFCLAL-  147 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHH----HHHHHHHHHH--H-HHHHHHHHHHHHHHHhh---hhccccccHHHHHHHHHH-
Confidence            99999999999998865443332    2222222221  1 11222223444677884   344 46899988887654 


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM  254 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  254 (308)
                      +++++|++++++.++.+++.+++.++|+.+.++.++++|+|+|+++|+||+|+++|+|++++.........+........
T Consensus       148 ~~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~  227 (291)
T PRK12886        148 APLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGI  227 (291)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            55677899999999999999999999999999999999999999999999999999999999887776666655443332


Q ss_pred             --HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        255 --NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       255 --~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                        ..++ +....++.........+..++ +|+++..++..+.+...+.++.+++++
T Consensus       228 ~~~~~~~y~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~F~~~~~~~~~l~~~~~~  282 (291)
T PRK12886        228 SAGLGPWFLAGLAVTGILLLYEHWLLRG-GDLTRLDAAFFNMNGYISVTLFAATLF  282 (291)
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHhHHHHHHHHHHHHH
Confidence              2233 332222222222234444543 332233455566677778666666553

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.2e-32  Score=243.99  Aligned_cols=215  Identities=23%  Similarity=0.244  Sum_probs=167.0

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDR   96 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r   96 (308)
                      |++|+|+|++||+....+..|.+.|.+++..  .   ..+...+++++++.++.++++|.+|||+|+|  +|+. ++|+|
T Consensus         2 m~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~--~---~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~--iD~~-~~~~R   73 (276)
T PRK12882          2 MTVRGYLELTRPVNAVVAGVAAFIGAFIAGG--I---LSSPSLTGLAFAAVFLATGAGNAINDYFDRE--IDRI-NRPDR   73 (276)
T ss_pred             CCHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--c---cchHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccc-cCCCC
Confidence            5689999999999999999999999999843  2   2234446788899999999999999999997  6863 45899


Q ss_pred             ceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHH
Q psy14930         97 TLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPIT  175 (308)
Q Consensus        97 ~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~  175 (308)
                      |+++|++|++|++.++..+.+++++++..+   ++   . ...+.+.+....+.||.  ++|+++ +||+.++...|..+
T Consensus        74 pl~~G~is~~~a~~~~~~l~~~g~~~~~~l---~~---~-~~~~~~~~~~~~~~Yt~--~lK~~~~~g~~~vg~~~g~~~  144 (276)
T PRK12882         74 PIPSGAVSPRGALAFSILLFAAGVALAFLL---PP---L-CLAIALFNSLLLVLYAE--TLKGTPGLGNASVAYLTGSTF  144 (276)
T ss_pred             CcCCCCcCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHH
Confidence            999999999999999998887777654332   11   1 12223334556788986  688887 59999988888765


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHH
Q psy14930        176 VLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVF  249 (308)
Q Consensus       176 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~  249 (308)
                      ..++.+ .........+..++...+++.+.+..||++|+|+|+++|+||+|+++|+|++.++...+.....+..
T Consensus       145 ~~g~~~-~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~  217 (276)
T PRK12882        145 LFGGAA-VGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAAS  217 (276)
T ss_pred             HHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence            555433 3323344556667777888899999999999999999999999999999999998777665555433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.4e-31  Score=241.99  Aligned_cols=274  Identities=18%  Similarity=0.167  Sum_probs=197.1

Q ss_pred             cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhh---CCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930         16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKL---PIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R   91 (308)
Q Consensus        16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~---~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~   91 (308)
                      ++++|+|+|.+||+....+....+.|..+|...   .|   .+++...+++++++++.+.++|.+|||+|+|  +|+. +
T Consensus         5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~---~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Drd--iD~~~~   79 (291)
T PRK12874          5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTG---WFGFKLLILGILAAVSARNFAMAFNRLVDRD--IDKDNP   79 (291)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cccCCC
Confidence            456999999999988777777777777776521   23   5788889999999999999999999999985  8875 5


Q ss_pred             CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHHH
Q psy14930         92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILMI  170 (308)
Q Consensus        92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~~  170 (308)
                      |+++||+++|++|++|++.++..+..++..+.    +..+. .  ...+.++.+.....||.   .|++ +++++..++.
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~----~~~n~-~--~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~~g~~  149 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVS----YFINP-L--AFKLSFPFLIVLGGYSY---FKRFSSLAHLVLGLS  149 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH----HHHhH-H--HHHHHHHHHHHHHHHhh---hcccccccHHHHHHH
Confidence            78999999999999999988877765433332    22221 1  12222334445667884   4544 6799999988


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930        171 FGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV  250 (308)
Q Consensus       171 ~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  250 (308)
                      +|..++ .++.+.+|+.++..++++++.++|+.+++..++++|+|+|+++|+||+|+++|+|++.+....+.....+...
T Consensus       150 ~~~~~l-~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~  228 (291)
T PRK12874        150 LGLAPI-AGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWL  228 (291)
T ss_pred             HHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHH
Confidence            876554 4566778899988888889999999999999999999999999999999999999999877666654444433


Q ss_pred             HHHH--HHHHHHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        251 VWGM--NHSYYYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       251 ~~~~--~~~~~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ....  ..+.+.... .+.........+..+++ +. +..+.....+...++++.+++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~ff~sn~~l~~l~~~~~~~  286 (291)
T PRK12874        229 LFVWCAHLGLFAYLGVIVSALILLYEHYLVRKD-FK-KIDKAFFTLNGYLGIVFFIFIVL  286 (291)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHhcCC-Ch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222  122333322 23344444444555432 22 23445568888888888887764

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=7e-31  Score=238.46  Aligned_cols=266  Identities=18%  Similarity=0.138  Sum_probs=185.9

Q ss_pred             HHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCceecc
Q psy14930         23 LLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDH  101 (308)
Q Consensus        23 l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l~~g  101 (308)
                      .+..||+.......|...|..+|....+   ..++...++.++++++.++++|.+|||+|+|  +|++ +|+++||+++|
T Consensus         8 ~R~~kp~~~~l~~~~~~~g~~la~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~--iD~~~~Rt~~RPl~sG   82 (281)
T TIGR01474         8 MRADKPIGTLLLLWPCLWSLLLAAQAGG---IPPLYLLGLFTVGAILMRGAGCVINDIWDRD--FDPQVERTKSRPLASG   82 (281)
T ss_pred             HccccHHHHHHHHHHHHHHHHHHhcccC---CCcHHHHHHHHHHHHHHHHHHHHHHhHhhhc--ccccCCcccCCCCCCC
Confidence            4455588888899999999999865323   3466667788889999999999999999975  7863 56789999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCc-ccchhHHHHHHHHHHHHHHHH
Q psy14930        102 ILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKY-TALGDVLILMIFGPITVLFAF  180 (308)
Q Consensus       102 ~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~-~~lge~~v~~~~G~l~~~~~~  180 (308)
                      ++|++|++.++..+.+++...+.    ..+.  . ...+.+.+++..+.||.   .|+ .+++++..++.++..++ .+|
T Consensus        83 ~is~~~a~~~~~~~~~~~~~l~~----~l~~--~-~~~l~~~~~~~~~~Y~~---~Kr~~~~~~~~~g~~~~~~~~-~g~  151 (281)
T TIGR01474        83 AVSVRQAILFLLVQLLVALGVLL----QLNP--L-TILLGVASLALVATYPF---MKRITYWPQLVLGLAFGWGAL-MGW  151 (281)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHH----HhhH--H-HHHHHHHHHHHHHHhch---hcccccccHHHHHHHHHHHHH-HHH
Confidence            99999999888877666555432    2221  1 22333445666889984   444 46799988888776554 447


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH-HHHHH-
Q psy14930        181 MSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG-MNHSY-  258 (308)
Q Consensus       181 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~-~~~~~-  258 (308)
                      +++++++++.++++.+...+|+.+.+.+++++|+|+|+++|+||+|+++|+|+++...........+..+... ...++ 
T Consensus       152 ~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (281)
T TIGR01474       152 AAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPV  231 (281)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            7889999988887888899999999999999999999999999999999998876654443333333222221 12233 


Q ss_pred             HHHHHHH-HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        259 YYLLPLV-TLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       259 ~~ll~ll-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      +.....+ ...+.+. ...+++ ++.++ -++..|.+...+.++.+++++
T Consensus       232 y~~~~~~~~~~~~~~-~~~~~~-~~~~~-~~~~F~~~~~~~~~l~~~~~~  278 (281)
T TIGR01474       232 YYLGLAAAALLLIRQ-IATLDI-RDPEN-CLKLFKANNYVGLLLFAGIAL  278 (281)
T ss_pred             HHHHHHHHHHHHHHH-HHHhCC-CCHHH-HHHHHHHhhHHHHHHHHHHHH
Confidence            3222222 2233333 333333 23222 346778888888888877764

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-30  Score=235.52  Aligned_cols=266  Identities=20%  Similarity=0.148  Sum_probs=175.7

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHH----hhhhhhhhcccCCC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNV----VNTYYDYVLGIDTS   90 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~----~Ndy~D~~~g~D~~   90 (308)
                      ..+++|.|+++.||++++.++.|+++|.++|...++  ..+++  +.+++++.++  .++|+    +|||+|+|  .|+.
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~--~~~~~--~~~~ll~~~~--i~~Nl~~y~iND~~D~D--~Dr~   75 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVA--DLFSP--AAVALFAYFL--FPANVFLYGVNDVFDAD--TDEL   75 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCc--ccccH--HHHHHHHHHH--HHHHHHHhcchhhhhhh--cccc
Confidence            345689999999999999999999999999976432  12444  4444544444  45666    69999996  4643


Q ss_pred             -CCCC-CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHH
Q psy14930         91 -RRSD-DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLI  167 (308)
Q Consensus        91 -~~~~-~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v  167 (308)
                       +++. .|++.      ++.+.....+..+++.+++.+....+..   .....++.++.++.||.|| |+|++|++|+.+
T Consensus        76 ~prk~~~r~~~------~s~~~~~~~~~~l~~~l~l~l~~~~~~~---~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~  146 (282)
T PRK12875         76 NPKKDREREVR------YRGDRRVLVAVALSGALALAFLLVLPPA---AWPALLAFLVLSVEYSAPPLRFKTTPVLDSLS  146 (282)
T ss_pred             CCCccCCCCcc------HHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHcCCCccchhccHHHHHH
Confidence             1222 23222      3333322222232334444443332211   1223345667889999999 999999999865


Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHH
Q psy14930        168 LMIFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYI  247 (308)
Q Consensus       168 ~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~  247 (308)
                      +..+ .+++.++|++|+++.+...+..  ..++++.+.++.||+||+|+|+++|+||+|+++|+|++++++..+..++..
T Consensus       147 ~g~~-~~~~~~~y~~~tg~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        147 NGLY-ILPGVAAYALVSGSLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHH-HHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence            4333 4666788999999887655433  357999999999999999999999999999999999999988877776665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy14930        248 VFVVWGMNHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVT  306 (308)
Q Consensus       248 ~~~~~~~~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  306 (308)
                      ..+...   +.+.++ +...|.....  ...++.+.++.....-..|...|.++..+.+
T Consensus       224 ~~~~~~---~~~~~~-~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (282)
T PRK12875        224 AFAAVD---LRLGAL-LLVYPALVLA--ILRAGIAVDRAYWWFPAINTVVGMLLTLGGL  276 (282)
T ss_pred             HHHHHH---HHHHHH-HHHHHHHHHH--HhccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            554432   222211 2223322211  1233456666777777888888888876653

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=1.3e-30  Score=234.08  Aligned_cols=266  Identities=17%  Similarity=0.062  Sum_probs=184.4

Q ss_pred             cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccH--HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCC
Q psy14930         18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSW--IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDD   95 (308)
Q Consensus        18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~--~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~   95 (308)
                      .++.+++++||.+|..+..|+.+|...+   ++   .+||  ...++++...+..|+..|.+|||+|+|  +| .+|.++
T Consensus        11 ~l~~ll~~sRP~~wi~t~~~~~~G~~~~---g~---~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~e--iD-a~Npr~   81 (292)
T PRK13595         11 PLRRLLLISRPALWVNTVGTLVTGVWLT---GH---LYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRE--TD-AASPRK   81 (292)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHh---cC---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh--hh-ccCCCC
Confidence            3788999999999999999999999665   22   5776  667777888899999999999999998  67 356677


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccchhHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTALGDVLILMIFGPI  174 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~lge~~v~~~~G~l  174 (308)
                      |++++|++|+++++.....+...++.+++++....+.   ....+.+++.+++++||.|| |+|++|+.+-.....+|..
T Consensus        82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~---~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p  158 (292)
T PRK13595         82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPP---AATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALP  158 (292)
T ss_pred             CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHH
Confidence            8899999999999988776666555555555444332   12223345567899999998 9999998654444555542


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM  254 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  254 (308)
                        .+...+..++......  .+...+|..+.+..++++|+|+||+.|.||+|+++|+|++.++...+.+++-....... 
T Consensus       159 --~~~~~~~~g~~~~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~-  233 (292)
T PRK13595        159 --LALPALALGAPVPWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS-  233 (292)
T ss_pred             --HHHHHHHcCCcchHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc-
Confidence              2223344554433222  24456788999999999999999999999999999999999988776665554433322 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC--ccccccHHHHHHHHHHHHHHHHHH
Q psy14930        255 NHSYYYLLPLVTLKSAFSIEKQFRCP--DKIHLVPKLTAKLNLYFGFLYVVA  304 (308)
Q Consensus       255 ~~~~~~ll~ll~lp~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~  304 (308)
                       .+.+..   +.+|-.....+..+++  ++-++.-+.+...|...|.+..+-
T Consensus       234 -~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  281 (292)
T PRK13595        234 -RLTALA---LWLICGGMALALWRRPTPETAHRLYPLSIVTPWIVGTVAGVL  281 (292)
T ss_pred             -chHHHH---HHHHHHHHHHHHhcCCCHHHHhccchHHHHHhHHHHHHHHHH
Confidence             111211   3333333333433332  344455555666777777655443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-30  Score=236.85  Aligned_cols=273  Identities=16%  Similarity=0.114  Sum_probs=190.7

Q ss_pred             hhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930         12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-   90 (308)
Q Consensus        12 l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-   90 (308)
                      +.+.++++++|+|++||+....+..+...|..+|..  |   ..++..+++.++++++++.++|.+|||+|+|  +|+. 
T Consensus         8 ~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~--~---~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~d--iD~~~   80 (300)
T PRK13106          8 LNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIK--G---IPPISTLILIFLALFFLRTAGMTNDNLADLE--IDAKN   80 (300)
T ss_pred             chhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhc--cccCC
Confidence            455777899999999999888888889999988753  4   5678888889999999999999999999975  8874 


Q ss_pred             CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHH
Q psy14930         91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILM  169 (308)
Q Consensus        91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~  169 (308)
                      +|+++||+++|++|++|+..+...+.+.+.+..    ...+. .  ...+...+++..+.|+.   .||+ +++++..++
T Consensus        81 ~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~----~~ln~-~--~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~  150 (300)
T PRK13106         81 PRTKNRPLVTGAIKISEAKALITAGLILFFASA----YLVNR-W--ALLLSPIVALIAMSYPY---MKRYTAFANYHLAS  150 (300)
T ss_pred             CccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH----HHHhH-H--HHHHHHHHHHHHHHHhH---HhcCCcchHHHHHH
Confidence            578999999999999999887654433322222    11111 1  11222223344556874   4544 579999999


Q ss_pred             HHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHH
Q psy14930        170 IFGPITVLFAFMSQTGRW--------EWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFL  241 (308)
Q Consensus       170 ~~G~l~~~~~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l  241 (308)
                      .+|..++.+ +.+.+|..        +..++++.+...+|+.+.+..++++|+|+|+++|+||+|+++| |+++++...+
T Consensus       151 ~~~~~~~~G-~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~  228 (300)
T PRK13106        151 IQGLAVFSG-AVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLN  228 (300)
T ss_pred             HHHHHHHHH-HHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHH
Confidence            998765444 55655633        2344556666788999999999999999999999999999999 8899888777


Q ss_pred             HHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        242 LFIPYIVFVVWGM--NHSYYYLL-PLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       242 ~~~~~~~~~~~~~--~~~~~~ll-~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ......+......  ..++.++. ..++.-......+..+.  + ++..+.+ +.|...|+++.+++++
T Consensus       229 ~~~~v~l~~~~~~~~~lg~~y~~~~~~~~~~l~~~~~~~~~--~-~~~~~~F-~~n~~ig~~~~~~~~~  293 (300)
T PRK13106        229 QLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYLASK--K-GDFGRAF-YYNIYSSIVLGLGIII  293 (300)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCC--c-hHHHHHH-HHccHHHHHHHHHHHH
Confidence            7766655544332  23333322 22222222223333332  2 4445544 8888899988888764

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.98  E-value=6.9e-30  Score=233.72  Aligned_cols=272  Identities=17%  Similarity=0.170  Sum_probs=194.5

Q ss_pred             cccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCC
Q psy14930         16 QEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSD   94 (308)
Q Consensus        16 ~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~   94 (308)
                      ++++|+|++++||+.+....+|+..|..+|..  +   .+++...++++++..+.++++|.+|||+|+|  +|+. ++++
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~---~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~--iD~~~~Rt~   82 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASK--G---HVDPVLMLAAVIGLSLVVASGCALNNCIDRD--IDAKMQRTR   82 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--C---CCCHHHHHHHHHHHHHHHHHHHHHhChHHhC--cCCCCCCCC
Confidence            45689999999999999999999999999832  4   5777777788889999999999999999965  8864 5678


Q ss_pred             CCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHHH
Q psy14930         95 DRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGPI  174 (308)
Q Consensus        95 ~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l  174 (308)
                      +||+++|++|++|+..++..+..++..++..+  .+.   ....+..++.+...+.||.  ++|+++..+..++...|.+
T Consensus        83 ~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~--~n~---~~~~l~~~~~~~~~~~Yt~--~lKr~t~~~~~vgg~~ga~  155 (306)
T PRK13362         83 NRVTVTGEISLGEALGFGLALGVAGFGLLAAF--TNP---LAALFAAFGYVVYVGVYSL--YLKRNSVYGTLVGSLSGAM  155 (306)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhH---HHHHHHHHHHHHHHHHHhH--HHhccCcHhHHHHHHHHHH
Confidence            99999999999999999888777666543221  111   1111222222334668984  5999998766677677778


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH-HH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV-WG  253 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~-~~  253 (308)
                      +++++|++++|+.++..+++.....+|+.++..+.+++|+|+|+++|.||+|++.|+|++++.......+....... ..
T Consensus       156 p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~  235 (306)
T PRK13362        156 PPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPL  235 (306)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999988999999999999999999999999999999999999998887544333222221111 11


Q ss_pred             HH-HHH-HHHHH-HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHH
Q psy14930        254 MN-HSY-YYLLP-LVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAV  305 (308)
Q Consensus       254 ~~-~~~-~~ll~-ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  305 (308)
                      .+ .+. +.... .+.....+...+..+++++.    ++.+|-.+.+++.++..+
T Consensus       236 ~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~----~~~a~~~f~~S~~yl~~~  286 (306)
T PRK13362        236 AGYTGIGYLAVAAATSLWWLAMALKGYRHAVDD----TVWARQLFGFSILTITAL  286 (306)
T ss_pred             HccccHHHHHHHHHHHHHHHHHHHHHHhccCCc----hHHHHHHHHHHHHHHHHH
Confidence            11 223 32222 22344445555666543221    234566666666665444

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=7.1e-30  Score=230.87  Aligned_cols=271  Identities=14%  Similarity=0.142  Sum_probs=193.5

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD   95 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~   95 (308)
                      |++|+|+|.+||+....+....+.|..+|..  +   ..++...++.+++++++..++|.+|||+|+|  +|+. +|+++
T Consensus         1 ~~~~~~~el~k~~~t~~al~~a~~g~~lA~~--~---~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~--iD~~~~RT~~   73 (286)
T PRK12895          1 MNFRDIVDYIKLEHTVFDLPFILAGYVIAAG--H---YIHPIKILLILIAAVSARTSAMSINRIEGLR--YDMINPRKKD   73 (286)
T ss_pred             CcHHHHHHHHhHHHHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCCCCcCCC
Confidence            4689999999999888888888889888742  3   4566667777888999999999999999997  7875 57899


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHH-HHHHHHHheeccCCCCCCccc-chhHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAV-FFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGP  173 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~  173 (308)
                      ||+++|++|++|++.+...+..++..+...   .++     .... ..........|+   ..||+. ++++..+..+|.
T Consensus        74 RPLpsG~is~~~A~~~~~~~~~~~~~~~~~---ln~-----l~~~l~~~~~~l~~~yp---~~KR~t~~~~~~lG~~~g~  142 (286)
T PRK12895         74 WALVSGRIKMREAIAFTIIFIAIFEICTFL---LNR-----LVFILSPIVIFLFIIDP---FLKRYTAWRHIYMGSIIGL  142 (286)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HhH-----HHHHHHHHHHHHHHHHH---HHHhCccccHHHHHHHHHh
Confidence            999999999999999888776655443221   221     1111 111222333343   356665 688999999994


Q ss_pred             HHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH
Q psy14930        174 ITVLFAFMSQTGRWEW--ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV  251 (308)
Q Consensus       174 l~~~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  251 (308)
                       +++++|.+.+++.++  .++++.+...+|+.+.+.+++++|+|+|++.|.||+|+++|+|++.++...+..++......
T Consensus       143 -~~l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~  221 (286)
T PRK12895        143 -GVLAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWI  221 (286)
T ss_pred             -HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHH
Confidence             667778888888764  34567778899999999999999999999999999999999999987776666665555443


Q ss_pred             HHH-HHHHHHHHHH-HHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        252 WGM-NHSYYYLLPL-VTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       252 ~~~-~~~~~~ll~l-l~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ... ..+++++... +..-......+..+. ++..+......+.|...|+++.+++++
T Consensus       222 ~g~~~~~~~y~~~~~~~~~~l~~q~~~~~~-~~~~~~~~~~F~~N~~ig~~~~~~~~~  278 (286)
T PRK12895        222 SGIYIRTLWYLAALIIIYTLVIYQHLIIDP-RNPINKRMSFFNANSFIGFVFLIGIIL  278 (286)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            332 1223223222 222223333334433 455555556778888899998888765

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.7e-29  Score=230.27  Aligned_cols=267  Identities=18%  Similarity=0.191  Sum_probs=191.4

Q ss_pred             cHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q psy14930         18 KLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRT   97 (308)
Q Consensus        18 ~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~   97 (308)
                      -++++++..|+.....+.....++....    .   ..++......++++++.+.++|.+|||+|+|  .|+ .++|+|+
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~--~D~-~n~~~R~   72 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYMAS----L---LLGLPISWLLLLITFLIAAAVYIINYLTDLE--EDI-INKPERV   72 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHH----H---HHcChhHHHHHHHHHHHHHHHHHhhhhcCCc--hhh-cCCCchH
Confidence            3689999999998877776555543211    1   2343456677888999999999999999998  463 4567787


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC--CCCccc-chhHHHHHHHHHH
Q psy14930         98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL--GLKYTA-LGDVLILMIFGPI  174 (308)
Q Consensus        98 l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p--~lk~~~-lge~~v~~~~G~l  174 (308)
                      .+    |+++.......+..+++.+++++...... +. ...+.+.+...++.||.||  ++|+.| +||+.++..+|..
T Consensus        73 ~~----s~~~~~~~~~~l~~i~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~  146 (285)
T PRK12872         73 VF----SETKAYGLFLLLNVLGLYLGAYLLAVIGG-PK-FALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALS  146 (285)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HH-HHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHH
Confidence            66    56777777777766677666655332211 11 2223334556799999975  689887 7999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGM  254 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~  254 (308)
                      ++.++++.+++.++...++.++..++++...+..||+||+|+|+++|+||+|+++|+|++++++..+..++++..+....
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~  226 (285)
T PRK12872        147 PLILGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVY  226 (285)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888888877778878888888888999999999999999999999999999999999999999999988877765443


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--HHHHHHHHHHHHHH
Q psy14930        255 --NHSYYYLLPLVTLKSAFSIEKQFRCPDKIHLV--PKLTAKLNLYFGFL  300 (308)
Q Consensus       255 --~~~~~~ll~ll~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  300 (308)
                        ..|.+.+..++..|..+...+.+.++++.++.  ....-+..+..|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  276 (285)
T PRK12872        227 TGLLPLLLLVLLLLLAYVLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLI  276 (285)
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHhHHHHHHHHH
Confidence              24555555555566555444443322222222  22344666665554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.97  E-value=1.6e-28  Score=223.02  Aligned_cols=272  Identities=15%  Similarity=0.067  Sum_probs=186.3

Q ss_pred             ccHHHHHHhhch---hHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CC
Q psy14930         17 EKLSSYLLALRP---WSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RR   92 (308)
Q Consensus        17 ~~~~~~l~~~Rp---~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~   92 (308)
                      +++++|+|++|.   ........|+..|..++...++   ..++..+++.+++++++++++|.+|||+|+|  +|+. +|
T Consensus         4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~---~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~--iD~~~~R   78 (289)
T PLN02809          4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGS---LPDLKMLALFGCGALLLRGAGCTINDLLDRD--IDKKVER   78 (289)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHHHHHHHHHHHhhHHhc--cccCCCC
Confidence            568899988884   5556678899999888753222   3567777888999999999999999999976  8965 57


Q ss_pred             CCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcc-cchhHHHHHHH
Q psy14930         93 SDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYT-ALGDVLILMIF  171 (308)
Q Consensus        93 ~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~-~lge~~v~~~~  171 (308)
                      +++||+++|++|++|+..+...+..+++.+...   ..+  .  ...+...+++..+.||.   .||+ +++++..++.+
T Consensus        79 T~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~---l~~--~--~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~  148 (289)
T PLN02809         79 TKLRPIASGALTPFQGVGFLGAQLLLGLGILLQ---LNN--Y--SRILGASSLLLVFTYPL---MKRFTFWPQAFLGLTF  148 (289)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HhH--H--HHHHHHHHHHHHHHHhH---HHhcCcchHHHHHHHH
Confidence            789999999999999998777766555544322   111  1  12222334556778874   5555 47898888777


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHH
Q psy14930        172 GPITVLFAFMSQTGRWEWATIC-YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFV  250 (308)
Q Consensus       172 G~l~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  250 (308)
                      +..+ +.+|.+++++.++..++ +.....+|+.+......++|+|+|+++|+||+|+++|+|.+.++. .+....+..+.
T Consensus       149 ~~~~-l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~  226 (289)
T PLN02809        149 NWGA-LLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLA  226 (289)
T ss_pred             HHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHH
Confidence            6544 55577888888776654 566677889999999999999999999999999999999555544 45555555544


Q ss_pred             HHHH--HHHH-HHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        251 VWGM--NHSY-YYLLPLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       251 ~~~~--~~~~-~~ll~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      ....  ..+. +.....+..-......+.++ +++.++..+. .+.|...|+++.+|+++
T Consensus       227 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~v~-~~~~~~~~~~-F~~n~~~g~~~~~~~~~  284 (289)
T PLN02809        227 LSGYNAGLGWPYYAGLAAAAGHLAWQIQTVD-LSSRADCNRK-FVSNKWFGAIVFAGIVL  284 (289)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence            3332  2222 22211121222222233332 2344444444 68888899888888765

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.97  E-value=1.3e-28  Score=220.43  Aligned_cols=190  Identities=27%  Similarity=0.380  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHH
Q psy14930         32 SASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSL  111 (308)
Q Consensus        32 ~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~  111 (308)
                      +.++.|++.|.+.+.  ++   ..++..+..+.+++++.+.++|..|||+|+|+|.|+ +++|+||+++|++|+++++..
T Consensus         2 ~~~~~~~l~~~~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~-~~~~~rPl~~g~i~~~~~~~~   75 (257)
T PF01040_consen    2 PLSFLPVLAGLALAS--GG---PFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIH-PNKPNRPLPSGRISPRQALIF   75 (257)
T ss_pred             hHHHHHHHHHHHHHH--cC---CCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCccc-ccccCcchhHHHHhHHHHHHH
Confidence            567888888844433  34   688888899999999999999999999999965552 478999999999999999997


Q ss_pred             HHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCC-CCCcccc-hhHHHHHHHHHHHHHHHHHHhcCCCcH
Q psy14930        112 GVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCL-GLKYTAL-GDVLILMIFGPITVLFAFMSQTGRWEW  189 (308)
Q Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p-~lk~~~l-ge~~v~~~~G~l~~~~~~~~~~~~~~~  189 (308)
                      +..+..++++++    +..+.  . ...+.+.+.+.++.|| +| ++|++++ +|+.+++.+|..+..+. +.++++.+.
T Consensus        76 ~~~~~~l~l~l~----~~~~~--~-~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  146 (257)
T PF01040_consen   76 ALILLLLGLLLA----LLLGP--W-FLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGA-YAAGGDPPP  146 (257)
T ss_pred             HHHHHHHHHHHH----HhcCc--h-hHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhh-hhcCCcccH
Confidence            777766665544    23332  1 2222233445568999 55 9999997 99999999887776554 456676677


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHH
Q psy14930        190 ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHV  236 (308)
Q Consensus       190 ~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~  236 (308)
                      ..+..+.+.+++...+.+.+|++|+|+|+++|+||+|+++|+++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.96  E-value=5.2e-27  Score=214.16  Aligned_cols=269  Identities=23%  Similarity=0.234  Sum_probs=194.6

Q ss_pred             HHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCc
Q psy14930         19 LSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRT   97 (308)
Q Consensus        19 ~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~   97 (308)
                      ++++++.-||........|..+|..++..  +   -.++...++.++++++...++|.+|||+|+|  +|+. +++++||
T Consensus        13 ~~~l~r~~r~i~~l~~~~~~~~~~~~~~~--~---~~~~~~~~l~~l~~~~~~~ag~~iND~~D~e--iD~~n~rt~~RP   85 (289)
T COG0382          13 LLKLLRLDRPIFNLLLLLPALLGLLLAAS--G---LPSLKLLLLAFLAFFLARSAGYVINDLADRE--IDRINPRTKNRP   85 (289)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHc--C---CchHHHHHHHHHHHHHHHHHhHHHHHHhhhh--ccCCCCCccCCC
Confidence            77888888999999999999999998862  2   2346788888999999999999999999998  6754 4567999


Q ss_pred             eecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHHHHHHHH
Q psy14930         98 LVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMIFGPITV  176 (308)
Q Consensus        98 l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~~G~l~~  176 (308)
                      +++|++|+++++....++.+++..+...+   ++   . ...+.++..++.+.|   |++|+.+ ++++..+..+|..+.
T Consensus        86 l~sG~vS~~~a~~~~~~~~~~~~~~a~~l---~~---~-~~~l~~~~~~l~~~Y---~~~Kr~~~~~~~~lg~~~~~~~~  155 (289)
T COG0382          86 LPSGRVSVKEALLLAILLLLLGLALALLL---NP---L-AFLLSLAALVLALAY---PFLKRFTFLPQLVLGLAFGLGAL  155 (289)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hH---H-HHHHHHHHHHHHHHH---HHhhcCCchHHHHHHHHHHHHHH
Confidence            99999999999998888876665554322   11   1 123334456677888   3677776 699999999987665


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHH-HHHH
Q psy14930        177 LFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVV-WGMN  255 (308)
Q Consensus       177 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~-~~~~  255 (308)
                      .+ +.+..++.+...+++.+...+|+.+....++++|+|+||+.|.||+|+.+|++++..+.........+.... +...
T Consensus       156 ~g-~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~  234 (289)
T COG0382         156 AG-AAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAG  234 (289)
T ss_pred             HH-HHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55 556667677788889999999999999999999999999999999999999999999888777332222222 1111


Q ss_pred             -HHHHHHHHHH-HHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        256 -HSYYYLLPLV-TLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       256 -~~~~~ll~ll-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                       .+.+.+.+.+ ..-...+.....+.  +..+......+.+...+++..++.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (289)
T COG0382         235 LLGLIYLLGLLVAALLLLYQILIVDV--RDPPACFALFDVNLLLGLLLFIGLIL  286 (289)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHhcc--cChHHHHHHHHHhhHHHHHHHHHHHH
Confidence             2222222222 12222222222222  23344566778888888888877654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.3e-26  Score=209.76  Aligned_cols=276  Identities=14%  Similarity=0.133  Sum_probs=185.3

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhh----CCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-C
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKL----PIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-R   91 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~----~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~   91 (308)
                      +++|.|.|.+|.+--..++==...|..+|...    +|.-+..+|..+++..++++++..++|.+|||+|+|  +|+. +
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~Drd--iD~~~~   79 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCA--IDKKNP   79 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCCCC
Confidence            35899999999754333332234466777521    220002468888899999999999999999999997  7875 6


Q ss_pred             CCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCccc-chhHHHHHH
Q psy14930         92 RSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTA-LGDVLILMI  170 (308)
Q Consensus        92 ~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~-lge~~v~~~  170 (308)
                      |+++||+++|++|++|++.+...+..++.++.    ...+. .  ...+.+.+++..+.||.   .||+. ++++..++.
T Consensus        80 RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~----~~ln~-l--~~~l~~~~~~~~~iY~~---~KR~t~~~~~vLGl~  149 (300)
T PRK12876         80 RTSSRVLPAKLLSINFSMLLLTLCSFLFLSLC----WLLNP-L--CFSLAVLSTLLMIIYPY---TKRVTFLCHWILGLV  149 (300)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHhH-H--HHHHHHHHHHHHHHHHh---HhcCCchhHHHHHHH
Confidence            78999999999999999988865443333322    22121 1  11222334445578874   67776 588877777


Q ss_pred             HHHHHHHHHHHHhcCC-CcH----HHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHH
Q psy14930        171 FGPITVLFAFMSQTGR-WEW----ATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       171 ~G~l~~~~~~~~~~~~-~~~----~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~  245 (308)
                      ++. .+.+++.+.+++ .++    ..++.+++..+|+.+.+..++++|+|+||+.|.||+|+++|++++.++...+..+.
T Consensus       150 ~~~-~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~  228 (300)
T PRK12876        150 YYL-AILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIAS  228 (300)
T ss_pred             HHH-HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHH
Confidence            776 445556665555 555    34556777888899999999999999999999999999999999877776666655


Q ss_pred             HHHHHHHHH--HHH-HHHHHHHH--HHHH-HHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        246 YIVFVVWGM--NHS-YYYLLPLV--TLKS-AFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       246 ~~~~~~~~~--~~~-~~~ll~ll--~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      .+.......  ..+ ++++..++  ..-+ .+++.+..  ++|..+......+.|...|+++.++++.
T Consensus       229 ~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~F~~N~~ig~~~~~~~~~  294 (300)
T PRK12876        229 AIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLI--DKKKSTLEQKFFLGNIYLALSFFVNMIG  294 (300)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            544433332  233 32333332  2222 33443444  2455566777889999999998888753

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=6.4e-26  Score=205.36  Aligned_cols=278  Identities=19%  Similarity=0.175  Sum_probs=183.6

Q ss_pred             ccccHHHHHHhhch---hHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930         15 LQEKLSSYLLALRP---WSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-   90 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp---~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-   90 (308)
                      ..+++++|+|++||   ......+.|...|..++..  +   ..++...++.+++..++..++|.+||+.|+|  +|+. 
T Consensus         3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~--~---~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~--iD~~~   75 (294)
T PRK12873          3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPS--A---PPSLLLLLLIILGGLAVSGAGCIANDLWDRR--IDRKV   75 (294)
T ss_pred             chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccC--C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCC
Confidence            34568999999664   5566678899999777532  2   4577778889999999999999999999997  7864 


Q ss_pred             CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHH
Q psy14930         91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMI  170 (308)
Q Consensus        91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~  170 (308)
                      +|+++||+++|++|++|+..++.++..++......+.....  .. ...+.+.++.....||.-+|+++.  .++..++.
T Consensus        76 ~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n--~l-~~~l~~~~~~~~~~Y~~~KR~t~~--~~~vlg~~  150 (294)
T PRK12873         76 ERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSR--NL-CLSLAFLALPPILIYPSAKRWFAY--PQAILALC  150 (294)
T ss_pred             CcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchh--HH-HHHHHHHHHHHHHHHHHHHhcccc--chHHHHHH
Confidence            67889999999999999999888776655543322110001  01 111222234456678742244443  46666665


Q ss_pred             HHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHH
Q psy14930        171 FGPITVLFAFMSQTGRWEWAT--ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIV  248 (308)
Q Consensus       171 ~G~l~~~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~  248 (308)
                      ++ .+++++|.+.+|+.++..  +.+.+...+|+.+..++..++|+|+|+++|.||+|+++|+ ++......+..+...+
T Consensus       151 ~a-~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~l  228 (294)
T PRK12873        151 WG-FAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIF  228 (294)
T ss_pred             HH-hHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHH
Confidence            55 455677888889888643  3334678899999999999999999999999999999997 5555555555555544


Q ss_pred             HHHHHH--HHHHHHHHHH-HHHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHHHHHHHHHHh
Q psy14930        249 FVVWGM--NHSYYYLLPL-VTLKSAFSIEKQFRCPDKI-HLVPKLTAKLNLYFGFLYVVAVTL  307 (308)
Q Consensus       249 ~~~~~~--~~~~~~ll~l-l~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~  307 (308)
                      +.....  ..+..+...+ ...-......+.++. ++. .+--.+..+.|-..|.++..|+++
T Consensus       229 l~~~g~~~~l~~~y~~~~~~~~~~l~~~~~~~~~-~~~~~~~c~~~F~~n~~~G~~i~~g~~~  290 (294)
T PRK12873        229 LALAAFIAQVGFIFWPFWLIASIGMQRDILKLFP-EKQSIKTIGNHFSNQVILGSLLLLGLIL  290 (294)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhCc-CcccHHHHHHHHHhccHHHHHHHHHHHH
Confidence            443332  2233222222 222222233333433 221 122234668888899999888875

>PLN02878 homogentisate phytyltransferase

Probab=99.95  E-value=8.4e-26  Score=200.71  Aligned_cols=187  Identities=19%  Similarity=0.163  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHH
Q psy14930         58 IILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHL  137 (308)
Q Consensus        58 ~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  137 (308)
                      ...+.+.+++++++.....+|||||.|  +| +.|+|+||+++|++|+++++.....+.++++.++..    .+. + .+
T Consensus        23 ~~~l~~~~~~l~~niyivglNd~~D~E--ID-kINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~----~g~-~-~l   93 (280)
T PLN02878         23 TGLLEALVPALLMNIYIVGLNQLYDIE--ID-KVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWI----VGS-W-PL   93 (280)
T ss_pred             HHHHHHHHHHHhhhhheechhhhhhhc--cc-ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HCh-H-HH
Confidence            344667888999999999999999997  89 589999999999999999999888877766665533    221 1 12


Q ss_pred             HHHHHHHHHHheeccC--CC-CCCcccchhHHHHHHHHHHHHHHHHHHh------cC--CCcHHHHHHHHHHHHHHHHHH
Q psy14930        138 AAVFFCGLSSSFLYSG--CL-GLKYTALGDVLILMIFGPITVLFAFMSQ------TG--RWEWATICYALPVALNTEAIL  206 (308)
Q Consensus       138 ~l~~~~~~~~~~~Ys~--~p-~lk~~~lge~~v~~~~G~l~~~~~~~~~------~~--~~~~~~~l~~l~~~l~~~~~~  206 (308)
                      ....+.++++++.||.  || |+|+.++--....+.-+.+.+-.+++..      .+  ..+...+...+.+.+...++.
T Consensus        94 ~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~  173 (280)
T PLN02878         94 FWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIA  173 (280)
T ss_pred             HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHH
Confidence            2222345577899996  77 9999886333333222222221222211      22  233344444445677788999


Q ss_pred             hhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930        207 HSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG  253 (308)
Q Consensus       207 ~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~  253 (308)
                      +.||+||+|+||+.|+||+|+++|+|++.++...+..++|+..+..+
T Consensus       174 i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g  220 (280)
T PLN02878        174 LFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVG  220 (280)
T ss_pred             HHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998655443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=1.8e-24  Score=195.25  Aligned_cols=174  Identities=13%  Similarity=0.053  Sum_probs=119.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q psy14930         54 QFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAK  133 (308)
Q Consensus        54 ~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  133 (308)
                      ..++...    +++.+...++|.+|||+|+|  +| ..|+|+|+.+    +++.+...+.+.    .++|+++.+..+  
T Consensus        58 ~~~~~~~----~~~~L~~~s~~~iNd~~D~e--iD-~IN~P~r~~~----s~~~a~~ls~la----~llGl~La~~~g--  120 (307)
T PRK13591         58 QSSILTC----IAGGLIIYSVYTLDRALDSE--ED-AVNRSELIGS----NKKIGLLVSLLA----FLLGTYILAMDG--  120 (307)
T ss_pred             CcchHHH----HHHHHHHHHHHHHhhhccch--hh-hccCcccccc----CHHHHHHHHHHH----HHHHHHHHHHHh--
Confidence            4555443    34456677899999999998  68 4678899875    666665554444    444544444433  


Q ss_pred             hhHHHHHHHHHHHHheeccCC----C-CC--C-cccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---
Q psy14930        134 MEHLAAVFFCGLSSSFLYSGC----L-GL--K-YTALGDVLILMIFGPITVLFAFMSQTGRWEWATICYALPVALNT---  202 (308)
Q Consensus       134 ~~~~~l~~~~~~~~~~~Ys~~----p-~l--k-~~~lge~~v~~~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~---  202 (308)
                      +   .++.+.+.+.++.||.+    | ++  | +.|+||+.+++.+|.+++.+.... ++.     +....+.++..   
T Consensus       121 ~---~ll~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~~~-----~~~~~~i~l~~~~~  191 (307)
T PRK13591        121 M---LLLAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-CGS-----LIPVGLIFLFFGVK  191 (307)
T ss_pred             H---HHHHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-hhh-----HHHHHHHHHHHHHH
Confidence            1   12334456679999985    4 44  4 446899999999998665331111 111     12222333333   


Q ss_pred             -HHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930        203 -EAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG  253 (308)
Q Consensus       203 -~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~  253 (308)
                       .....+||+||+|+|+++|+||+|+++|+++|++++..+.+++++..+...
T Consensus       192 l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~  243 (307)
T PRK13591        192 LFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIAL  243 (307)
T ss_pred             HHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence             445578999999999999999999999999999999999999998776554

>PLN02776 prenyltransferase

Probab=99.92  E-value=1e-22  Score=187.13  Aligned_cols=258  Identities=17%  Similarity=0.142  Sum_probs=182.0

Q ss_pred             hchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCCCceecccCC
Q psy14930         26 LRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDDRTLVDHILS  104 (308)
Q Consensus        26 ~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~r~l~~g~ls  104 (308)
                      +||+.....++....|..+|..  +   ..++..+++.++++++..+++|.+|||+|+|  +|+. +|+++||+++|++|
T Consensus         2 ~Kpri~~lv~~ta~~G~~lA~~--~---~~~~~~l~~~~lg~~l~~aaa~~~N~i~Drd--iD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          2 SKARLSALVVATSGAGFVLGSG--E---AIDLPGLGWTCAGTMLCAASANTLNQVFEVK--NDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CcchhHHHHHHHHHHHHHHhcC--C---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhh--hcccCCCCCCCCCCCCCCC
Confidence            5788888888899999998842  3   5677788888999999999999999999997  7865 67899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHH-HHHheeccCCCCCCcccchhHHHHHHHHHHHHHHHHHHh
Q psy14930        105 ESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCG-LSSSFLYSGCLGLKYTALGDVLILMIFGPITVLFAFMSQ  183 (308)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l~~~~~~~~~  183 (308)
                      +++++.++..+.++++.+.   .+..+  .. ...+.+.+ +.....||.   +|++...+..++...|.++++++|.+.
T Consensus        75 ~~~A~~~~~~l~~~g~~~l---~~~~n--~l-~~~l~~~~~~ly~~vYt~---lKR~t~~~~~lG~~~Ga~ppL~Gw~Av  145 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALL---AYKTN--ML-TAGLGAGNILLYAFVYTP---LKQIHPANTWVGAVVGAIPPLMGWAAA  145 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHh--HH-HHHHHHHHHHHHHHHHHh---HccCCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999998888766555321   11111  11 12222222 334567883   788887788889999988999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceee--cchhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Q psy14930        184 TGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILL--GQSYSHVYYAFLLFIPYIVFVVWGMN--HSYY  259 (308)
Q Consensus       184 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~l--G~~~a~~l~~~l~~~~~~~~~~~~~~--~~~~  259 (308)
                      +|++++.++++.....+|+....+.-.+.|.|+|+++|.+.+|+.-  |++.++......+.+..+.++.....  ...+
T Consensus       146 tg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~  225 (341)
T PLN02776        146 SGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPF  225 (341)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            9999999999999999999998888889999999999999999866  46666665544444433333322222  2223


Q ss_pred             HHH-HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHH
Q psy14930        260 YLL-PLVTLKSAFSIEKQFRCPDKIHLVPKLTAKLNLYFGFLYVVAV  305 (308)
Q Consensus       260 ~ll-~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  305 (308)
                      .+. ..+.....+...+.+++ ++     ...++-.+..++.++..+
T Consensus       226 ~~~a~~l~~~~l~~~~~~~~~-~~-----~~~ar~~F~~Sl~yL~~l  266 (341)
T PLN02776        226 ALEAALLTAYLAASAASFYRE-PT-----NANARKMFHGSLLYLPAF  266 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-CC-----hHHHHHHHHHHHHHHHHH
Confidence            222 23344444444455543 23     223455555555555443

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-23  Score=187.81  Aligned_cols=251  Identities=18%  Similarity=0.195  Sum_probs=197.4

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS   93 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~   93 (308)
                      .++++|+|++++||+.....+.+...|..+|.+  +   ..++...+.+.++..+...++|.+|.|+|+|  +|+. +|+
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~---~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrD--ID~~M~RT   86 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--G---SINPLLLLLTLLGGALGAGGAGAFNMYIDRD--IDALMERT   86 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--c---cccHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHhhhhc
Confidence            567899999999999999999999999999976  4   7899999999999999999999999999986  8975 688


Q ss_pred             CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchhHHHHHHHHH
Q psy14930         94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGDVLILMIFGP  173 (308)
Q Consensus        94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~  173 (308)
                      .+||+++|+++|+|+..++..+.+++.....   +..+  +....+..++.+.....||.  .+||+-.-|++++..-|.
T Consensus        87 ~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~---~~vn--~laa~l~~~gi~~Yv~vYT~--~lKR~T~~NiviGg~aGa  159 (304)
T COG0109          87 RKRPLVTGLISPREALAFGLVLGVAGFSLLW---FLVN--LLAAVLGLFGIFFYVVVYTL--WLKRRTPQNIVIGGFAGA  159 (304)
T ss_pred             cCCCCCCCccCHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHhhhhhh--hccCCcccceeeeecccc
Confidence            9999999999999999999888766655431   1111  11122333445567888997  589998889999888999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHH
Q psy14930        174 ITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWG  253 (308)
Q Consensus       174 l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~  253 (308)
                      .+++.+|.+.+|+++++++++...+++|+..+.++-.++-.|+.+++|...+|+.-|++.+++......++.....+...
T Consensus       160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~  239 (304)
T COG0109         160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLA  239 (304)
T ss_pred             ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888999999999999999999999888865444333332222222


Q ss_pred             -HHHH--HHHH-HHHHHHHHHHHHHHHhcC
Q psy14930        254 -MNHS--YYYL-LPLVTLKSAFSIEKQFRC  279 (308)
Q Consensus       254 -~~~~--~~~l-l~ll~lp~~~~~~~~~~~  279 (308)
                       .+..  .+.. ..++.........+.+++
T Consensus       240 ~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~  269 (304)
T COG0109         240 LLGYVGYLYLVVATLLGAWFLALAWKLYRK  269 (304)
T ss_pred             HhccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence             2222  2322 334566666666676665

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.90  E-value=1.9e-21  Score=174.26  Aligned_cols=230  Identities=14%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q psy14930         56 SWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKME  135 (308)
Q Consensus        56 ~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (308)
                      .....+++.+++++...++|++|||+|+|  +| ..++|+||+|+|++|+++++.++..+.+++..++... ..      
T Consensus        44 ~~~~~~l~~~~vf~~~~~gniiNDy~D~E--ID-rIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~i------  113 (299)
T PRK13592         44 IGIQEFVGVFTVFGFWMILRIADDFKDYE--TD-RRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-MN------  113 (299)
T ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhHH--Hh-hhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-HH------
Confidence            45566777888888999999999999998  78 5799999999999999999999888766555554332 00      


Q ss_pred             HHHHHHHHHHHHheec-----cCCCCCCcccc-hhHHHHHHHHHHHHHH------HHHHh-cCCCc--HHHHHHHHHHHH
Q psy14930        136 HLAAVFFCGLSSSFLY-----SGCLGLKYTAL-GDVLILMIFGPITVLF------AFMSQ-TGRWE--WATICYALPVAL  200 (308)
Q Consensus       136 ~~~l~~~~~~~~~~~Y-----s~~p~lk~~~l-ge~~v~~~~G~l~~~~------~~~~~-~~~~~--~~~~l~~l~~~l  200 (308)
                        .+   ...+..+.|     +.  ++|+.++ |++.++...|.....+      .+... .+...  ...+.+++...+
T Consensus       114 --~i---~~~~i~~lY~~lm~a~--~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl  186 (299)
T PRK13592        114 --NV---GWFLFLYIYGTLMSFW--FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYF  186 (299)
T ss_pred             --HH---HHHHHHHHHHHHHHHH--HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence              00   111223334     44  6888885 9999987777433222      11111 12111  112455566667


Q ss_pred             HHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhc
Q psy14930        201 NTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYAFLLFIPYIVFVVWGMNHSYYY-LLPLVTLKSAF-SIEKQFR  278 (308)
Q Consensus       201 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~-ll~ll~lp~~~-~~~~~~~  278 (308)
                      ...+.+..+|++| |+|++ |.+|+|+++|.|+|.++...+.++..+...+..+..+.+. ....+...... ...+.++
T Consensus       187 ~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~~~l~~~~~~~l~~~~~~lk  264 (299)
T PRK13592        187 PSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGVVVLVLNVIWMTVQFEQFIK  264 (299)
T ss_pred             HHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            7889999999999 88885 5999999999999999988877766654322111111111 11122233333 3344555


Q ss_pred             CCccc--cccHHHHHHHHHHHHHHHHHH
Q psy14930        279 CPDKI--HLVPKLTAKLNLYFGFLYVVA  304 (308)
Q Consensus       279 ~~~~~--~~~~~~~~~~~~~~~~l~~~~  304 (308)
                      +|++.  .+..++..|..+..+++-.++
T Consensus       265 ~p~~~~~~~~~~~~~ki~~~l~~la~~~  292 (299)
T PRK13592        265 SPTRFNIRERVERYTYITETTMVLSVAV  292 (299)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            54221  123445567666666554443

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.78  E-value=2.4e-16  Score=143.27  Aligned_cols=194  Identities=21%  Similarity=0.095  Sum_probs=119.3

Q ss_pred             ccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCC
Q psy14930         15 LQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRS   93 (308)
Q Consensus        15 ~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~   93 (308)
                      .++++++|++++||+.+......+. +...+.....   ..++...++++++..+...++|.+||++|+|  .|+. +++
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~---~~~~~~~llafl~~~l~~sa~y~iND~~D~e--~Dr~~prk   80 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLN---PGALLKVLLAFVLFCLASSAVYLVNDIRDVE--ADRLHPTK   80 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcc---cchHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hhccCCCC
Confidence            4557999999999998877666333 4444433211   2235566677777778889999999999998  5764 578


Q ss_pred             CCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccc-hhHHHHHHHH
Q psy14930         94 DDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTAL-GDVLILMIFG  172 (308)
Q Consensus        94 ~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~l-ge~~v~~~~G  172 (308)
                      ++||+++|++|++++..++.++..+++.++..+   ++   . ...+.++.++..+.||.  ++|++++ +.+.++..++
T Consensus        81 ~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l---~~---~-~~~~~~~~~~~~~~Ys~--~lK~~~~~d~l~va~~~~  151 (295)
T PRK12324         81 RNRPIASGVVSVSLAYILAVVLLVASLALAYLL---SP---K-LALVLLVYLVLNLAYSF--KLKHQPVLDVFCIASGFV  151 (295)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHH---HH---H-HHHHHHHHHHHHHHhhH--HhcCCchhhHHHHHHHHH
Confidence            999999999999999998888777666554322   11   1 12222344566788997  6899985 5666666666


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcc
Q psy14930        173 PITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVT  224 (308)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~T  224 (308)
                      .-...| ..+...+.+...+..+...+++....---.+.++.++|.+..|++
T Consensus       152 lr~~~G-~~a~~~~~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~~~~r~~  202 (295)
T PRK12324        152 LRAIAG-GVAIGVPLSPWLLLCTALLSLFLAAGKRKAELRLLEDTGAKHRKV  202 (295)
T ss_pred             HHHHHH-HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            534334 333333333222222222222223223334455555554443433

>PRK08238 hypothetical protein; Validated

Probab=99.72  E-value=6.5e-15  Score=142.55  Aligned_cols=192  Identities=16%  Similarity=0.117  Sum_probs=132.1

Q ss_pred             hhhccccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-
Q psy14930         12 FTMLQEKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-   90 (308)
Q Consensus        12 l~~~~~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-   90 (308)
                      +++.+.++++|++++||+.+.-.++. .++.+.+.....   ...+...++++++..+...++|++|||+|+|  .|+. 
T Consensus       184 ~~~~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~~~~---~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e--~Dr~~  257 (479)
T PRK08238        184 FPPRPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQFGD---LQALLAALLAFLAFSLCASAVYILNDLLDLE--ADRAH  257 (479)
T ss_pred             cCCCchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcccCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hhccC
Confidence            34556678999999999998777665 336665532111   1235566778888889999999999999997  6864 


Q ss_pred             CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccc-hhHHHHH
Q psy14930         91 RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTAL-GDVLILM  169 (308)
Q Consensus        91 ~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~l-ge~~v~~  169 (308)
                      +++++||+++|++|++++..++.+++.+++.++..    .+.   ....+.++.++....||.  ++|++++ +.+..++
T Consensus       258 ~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~----l~~---~~~~~~~~~~~~~~~Ys~--~lKr~~~~~~~~la~  328 (479)
T PRK08238        258 PRKRRRPFASGALPIPFGLAAAPLLLLAGLALALA----LGP---AFLLVLLAYLALTLAYSL--RLKRKVLVDVLTLAA  328 (479)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HhH---HHHHHHHHHHHHHHHhhH--HhcCCccccchHHHH
Confidence            57899999999999999999888877766654432    121   112223344556778996  5899885 6677777


Q ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCC
Q psy14930        170 IFGPITVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGI  222 (308)
Q Consensus       170 ~~G~l~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~  222 (308)
                      .++.-++.| +.+.  ..+...|++.+.+ ++.....+.+-..|.+.++..|+
T Consensus       329 ~~~lr~~~G-~~a~--~~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        329 LYTLRIIAG-AAAI--GVALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHHHHH-HHHh--ccCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence            776544444 3332  2556666654433 44555567788888888888886

>KOG1381|consensus

Probab=99.65  E-value=6e-16  Score=134.68  Aligned_cols=216  Identities=15%  Similarity=0.066  Sum_probs=145.3

Q ss_pred             hhhhhhccccHHHHHHhhchhH---HHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy14930          9 NIWFTMLQEKLSSYLLALRPWS---LSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVL   85 (308)
Q Consensus         9 ~~~l~~~~~~~~~~l~~~Rp~~---l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~   85 (308)
                      +.|.++.+++++.|.|++|...   --.-..|+....++|... |  ...+.....+.-.+.+++..+++.+||..|.+ 
T Consensus        54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g--~~p~~~mL~LFG~GAllMRgAGCtINDlwDkd-  129 (353)
T KOG1381|consen   54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-G--LLPSIKMLALFGVGALLMRGAGCTINDLWDKD-  129 (353)
T ss_pred             hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-C--ccchhHHHHHhcccHHHhccCCceehhhhhhh-
Confidence            4567778889999999999532   223357888888887643 3  13345555556667899999999999999986 


Q ss_pred             ccCCC-CCCCCCceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHheeccCCCCCCcccchh
Q psy14930         86 GIDTS-RRSDDRTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFCGLSSSFLYSGCLGLKYTALGD  164 (308)
Q Consensus        86 g~D~~-~~~~~r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~Ys~~p~lk~~~lge  164 (308)
                       +|.+ +|++.||+.+|++|++|+..+-...+.+++.+   +.-....    -..+...++...+.|+..+|+.|.|  +
T Consensus       130 -lD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgi---LlqLn~y----si~lg~~sl~~v~~ypl~kr~TY~p--q  199 (353)
T KOG1381|consen  130 -LDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGI---LLQLNWY----SIALGASSLALVITYPLMKRFTYWP--Q  199 (353)
T ss_pred             -hhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHH---HHhccHH----HHHhcccccccEEEeehhhhcchhH--H
Confidence             7865 68899999999999999876544433333221   1112221    1122223455677888755666665  3


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecchhhHHHHH
Q psy14930        165 VLILMIFGPITVLFAFMSQTGRWEWAT-ICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQSYSHVYYA  239 (308)
Q Consensus       165 ~~v~~~~G~l~~~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~~~a~~l~~  239 (308)
                      .+.+..|+.-..+| |.+..|+..... +-+-+-...|+.....+...+|.++|.+.|+|+.+.|+|++.-.++..
T Consensus       200 ~vLgltfnwGAllG-w~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g  274 (353)
T KOG1381|consen  200 LVLGLTFNWGALLG-WCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG  274 (353)
T ss_pred             HHHhhhcchhhhhc-chhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh
Confidence            34455555555444 556666655432 222333446788888999999999999999999999999886666543

>KOG1380|consensus

Probab=99.38  E-value=2.6e-13  Score=121.04  Aligned_cols=212  Identities=17%  Similarity=0.140  Sum_probs=154.2

Q ss_pred             ccHHHHHHhhchhHHHHHHHHHHHHHHHHhhhCCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-CCCCC
Q psy14930         17 EKLSSYLLALRPWSLSASLIPTLLGCALAVKLPIEKGQFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTS-RRSDD   95 (308)
Q Consensus        17 ~~~~~~l~~~Rp~~l~~~~~~~~~g~~la~~~~g~~~~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~-~~~~~   95 (308)
                      ..++.|+|+.+|+.-...++....|.++|-   +   .+++..++.+.++..+..+++|.+|++++-.  .|.+ .|+..
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap---~---p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~--~DsqM~RT~~  163 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAP---G---PFSFPTLLYTTVGTGLCSASANAINQIFEPP--FDSQMKRTQN  163 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccc---c---CCCcchhHHHhhhhHHHHhhhHhhhhhccCC--chhhhHhhcc
Confidence            357899999999987777777788888773   4   6899999999999999999999999999987  4654 57889


Q ss_pred             CceecccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH-HHHHheeccCCCCCCcccchhHHHHHHHHHH
Q psy14930         96 RTLVDHILSESELVSLGVMLYLVSSAGFILLSYISPAKMEHLAAVFFC-GLSSSFLYSGCLGLKYTALGDVLILMIFGPI  174 (308)
Q Consensus        96 r~l~~g~ls~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~Ys~~p~lk~~~lge~~v~~~~G~l  174 (308)
                      ||+++|++||.+++.++.+.-..+..+   +.+....  . .+.+..+ .++.+..||   ++|+.-..+-.++-..|.+
T Consensus       164 Rplv~g~isp~hA~~fAt~~g~~G~sl---L~~gvNp--l-~a~Lga~Ni~LY~~vYT---PlKrihiinTWvGavVGAI  234 (409)
T KOG1380|consen  164 RPLVRGRISPLHAVTFATLTGTAGVSL---LAFGVNP--L-AAALGAGNIFLYAGVYT---PLKRIHIINTWVGAVVGAI  234 (409)
T ss_pred             cccccCccChHHHHHHHHHhcccccee---eeecccH--H-HHHHhhcchheeecccc---chhhhhhhhhHHHHHhccC
Confidence            999999999999988776553322211   1121221  1 1222222 233566777   6899888999999999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceee---cchhhHHHHHHHHHHH
Q psy14930        175 TVLFAFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILL---GQSYSHVYYAFLLFIP  245 (308)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~l---G~~~a~~l~~~l~~~~  245 (308)
                      +++.+|.+.+|..+...++++-....|-......-...=+++.+++|.|-.++.=   -++.|.+....+.-++
T Consensus       235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~  308 (409)
T KOG1380|consen  235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS  308 (409)
T ss_pred             CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence            9999999999999888888777777777666544444456778889999888753   3444555444444333

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=95.24  E-value=1.1  Score=40.48  Aligned_cols=38  Identities=21%  Similarity=0.057  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeecc
Q psy14930        193 CYALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLGQ  231 (308)
Q Consensus       193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG~  231 (308)
                      +..+...+...+....||+.|+|.|+++ |+.=|..-|+
T Consensus        41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         41 LGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            3344455566777889999999999999 6777777774

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=94.89  E-value=1.5  Score=40.00  Aligned_cols=41  Identities=22%  Similarity=0.073  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930        191 TICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ  231 (308)
Q Consensus       191 ~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~  231 (308)
                      ..+..+.+.+...+....||+.|+|-||++-+ |.=|.-=|+
T Consensus        49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            34455556667788889999999999999887 455555553

>PRK13595 ubiA prenyltransferase; Provisional

Probab=94.15  E-value=3.9  Score=37.42  Aligned_cols=21  Identities=24%  Similarity=0.088  Sum_probs=17.5

Q ss_pred             HHHHhhcCCCChhhhHhcCCc
Q psy14930        203 EAILHSNNTRDLESDRQVGIV  223 (308)
Q Consensus       203 ~~~~~~~~~~D~e~D~~~G~~  223 (308)
                      ....-+||.-|+|.|+++.++
T Consensus        61 ~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595         61 LLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             HHHHHHHhhhhhhhhccCCCC
Confidence            455778999999999988766

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=93.72  E-value=1.3  Score=40.13  Aligned_cols=52  Identities=23%  Similarity=0.035  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccceeec---chhhHHHHHHHHHHHH
Q psy14930        194 YALPVALNTEAILHSNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAFLLFIPY  246 (308)
Q Consensus       194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~l~~~~~  246 (308)
                      ..+...+...+....||.-|+|.|+.+. ++=|..-|   ++.+..+...+..++.
T Consensus        43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g~   97 (276)
T PRK12882         43 AFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAGV   97 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence            3344445566778899999999999754 55555555   4455554444444443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=93.67  E-value=4.3  Score=36.77  Aligned_cols=52  Identities=19%  Similarity=0.129  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCChhhhHhcCCcccce---eecchhhHHHHHHHHHHHH
Q psy14930        194 YALPVALNTEAILHSNNTRDLESDRQVGIVTVAI---LLGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~~  246 (308)
                      ..+...+...+....||+-|+|.|+.+. ++=|.   ++.++.+..+...+..++.
T Consensus        42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~   96 (279)
T PRK09573         42 AALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL   96 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence            3444556667778999999999999764 33344   4445555555544444443

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=93.07  E-value=6.5  Score=36.07  Aligned_cols=50  Identities=24%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhhcCCCChhhhHhcC-Ccccce---eecchhhHHHHHHHHHHH
Q psy14930        196 LPVALNTEAILHSNNTRDLESDRQVG-IVTVAI---LLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       196 l~~~l~~~~~~~~~~~~D~e~D~~~G-~~Tl~v---~lG~~~a~~l~~~l~~~~  245 (308)
                      +.+.+...+....||+.|+|.||++- ||.=|.   ++.++.+..+...+..++
T Consensus        53 l~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         53 VLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            33445566778999999999999973 233333   344555555444444433

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=92.36  E-value=2.9  Score=36.80  Aligned_cols=51  Identities=24%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             HhcCCCcHHHHHHHH-HHHHHHHHHHhhcCCCChhhhHhcC-Ccccceeecch
Q psy14930        182 SQTGRWEWATICYAL-PVALNTEAILHSNNTRDLESDRQVG-IVTVAILLGQS  232 (308)
Q Consensus       182 ~~~~~~~~~~~l~~l-~~~l~~~~~~~~~~~~D~e~D~~~G-~~Tl~v~lG~~  232 (308)
                      ...+..++..+.... ...+........||..|.|.|+.+. ++.-|..-|+-
T Consensus        15 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i   67 (257)
T PF01040_consen   15 ASGGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI   67 (257)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence            334555554443333 3335667778899999999999963 34444444433

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=92.26  E-value=1.8  Score=39.82  Aligned_cols=47  Identities=13%  Similarity=-0.039  Sum_probs=29.4

Q ss_pred             HHHHHHHHhhcCCCChhhhHhcCCccccee---ecchhhHHHHHHHHHHHH
Q psy14930        199 ALNTEAILHSNNTRDLESDRQVGIVTVAIL---LGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       199 ~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~---lG~~~a~~l~~~l~~~~~  246 (308)
                      .+...+....||.-|.|.|+++++ +=|+.   +.+|.+......+..++.
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~  113 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGI  113 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHH
Confidence            455667788999999999998764 33443   445555544444444333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=91.87  E-value=3.4  Score=37.34  Aligned_cols=45  Identities=20%  Similarity=0.118  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhhcCCCChhhhHhcCCcccceeec---chhhHHHHHHHHH
Q psy14930        198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAFLLF  243 (308)
Q Consensus       198 ~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~l~~  243 (308)
                      ..+...+....||+.|+|.|+.++ ++=|..=|   ++.+..+...+..
T Consensus        46 ~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~   93 (277)
T PRK12883         46 VYLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA   93 (277)
T ss_pred             HHHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence            334446678899999999999754 55555544   4455554444433

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=91.74  E-value=4.4  Score=37.26  Aligned_cols=40  Identities=8%  Similarity=-0.138  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930        192 ICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ  231 (308)
Q Consensus       192 ~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~  231 (308)
                      ++..+.+.+.-++-+..||+-|+|-|+++-| ++=|.-=|+
T Consensus        50 ~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~   90 (300)
T PRK12876         50 SLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL   90 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence            3555666666677788999999999999886 455555564

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=91.50  E-value=6.3  Score=36.24  Aligned_cols=47  Identities=23%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             CCCcHHH-HHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930        185 GRWEWAT-ICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ  231 (308)
Q Consensus       185 ~~~~~~~-~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~  231 (308)
                      +..++.. .+..+...+...+-...||+-|+|-|+++.| ++=|..=|+
T Consensus        44 ~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~   92 (300)
T PRK13106         44 GIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGA   92 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCC
Confidence            3444433 3344455566677788999999999998753 233444453

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=91.20  E-value=3.5  Score=37.71  Aligned_cols=39  Identities=21%  Similarity=0.096  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecch
Q psy14930        194 YALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQS  232 (308)
Q Consensus       194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~~  232 (308)
                      ..+...+...+-...||+.|+|-|+++.| |+=|.-=|+-
T Consensus        50 ~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~i   89 (289)
T PLN02809         50 FGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGAL   89 (289)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCC
Confidence            34444566677789999999999998765 5667666743

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=91.14  E-value=6.1  Score=36.10  Aligned_cols=53  Identities=9%  Similarity=-0.035  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChhhhHhcCCc-ccc---eeecchhhHHHHHHHHHHH
Q psy14930        193 CYALPVALNTEAILHSNNTRDLESDRQVGIV-TVA---ILLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~-Tl~---v~lG~~~a~~l~~~l~~~~  245 (308)
                      +..+...+..++-...||+-|+|-|+++-|+ .=|   =++..+.|..+...+..++
T Consensus        41 l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~   97 (286)
T PRK12895         41 LILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIF   97 (286)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3344444556777889999999999988433 233   3444455555444444333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=90.74  E-value=3  Score=37.84  Aligned_cols=56  Identities=13%  Similarity=0.035  Sum_probs=34.2

Q ss_pred             cCCCcHH-HHHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHH
Q psy14930        184 TGRWEWA-TICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYA  239 (308)
Q Consensus       184 ~~~~~~~-~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~  239 (308)
                      .+..++. .++..+...+...+....||+.|+|.|+++.| ++=|.   ++.++.+..+..
T Consensus        30 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~   90 (282)
T TIGR01475        30 KGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII   90 (282)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence            3444543 33444555667788889999999999998732 22233   344555555443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=90.58  E-value=4.3  Score=37.29  Aligned_cols=64  Identities=20%  Similarity=0.190  Sum_probs=34.0

Q ss_pred             CCCcHHHHH-HHHHHHHHHHHHHhhcCCCChhhhHhc-----CC-----cccce---eecchhhHHHHHHHHHHHHHH
Q psy14930        185 GRWEWATIC-YALPVALNTEAILHSNNTRDLESDRQV-----GI-----VTVAI---LLGQSYSHVYYAFLLFIPYIV  248 (308)
Q Consensus       185 ~~~~~~~~l-~~l~~~l~~~~~~~~~~~~D~e~D~~~-----G~-----~Tl~v---~lG~~~a~~l~~~l~~~~~~~  248 (308)
                      +..++.... ..+...+...+-...||+-|+|-|+..     +|     |+=|.   ++-+|.+..+...+.+++..+
T Consensus        36 g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l  113 (297)
T PRK12871         36 GGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL  113 (297)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            445554333 233333334444689999999999752     21     22333   444555555555555544433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=90.28  E-value=6.1  Score=36.44  Aligned_cols=39  Identities=15%  Similarity=0.043  Sum_probs=27.3

Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCCCChhhhHhc
Q psy14930        179 AFMSQTGRWEWATICYALPVALNTEAILHSNNTRDLESDRQV  220 (308)
Q Consensus       179 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~D~e~D~~~  220 (308)
                      ++..+..+.++.   ..+..++.+.+....||.-|+|.|+-+
T Consensus        51 a~lL~g~~~~~~---~~~~~~L~~~s~~~iNd~~D~eiD~IN   89 (307)
T PRK13591         51 AFLLLGLQSSIL---TCIAGGLIIYSVYTLDRALDSEEDAVN   89 (307)
T ss_pred             HHHHhCCCcchH---HHHHHHHHHHHHHHHhhhccchhhhcc
Confidence            344445555543   344566778888899999999999875

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=89.97  E-value=7  Score=35.60  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             cCCCcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCCc-ccceeecc
Q psy14930        184 TGRWEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGIV-TVAILLGQ  231 (308)
Q Consensus       184 ~~~~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~lG~  231 (308)
                      .++.++..+ +..+...+...+-...||+-|+|-|+++.|. +=|.-=|+
T Consensus        33 ~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   82 (284)
T PRK12888         33 DGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGA   82 (284)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCC
Confidence            455555433 3444555666777899999999999988631 23444454

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=89.81  E-value=4.5  Score=36.85  Aligned_cols=19  Identities=16%  Similarity=0.038  Sum_probs=16.2

Q ss_pred             hhcCCCChhhhHhcCCccc
Q psy14930        207 HSNNTRDLESDRQVGIVTV  225 (308)
Q Consensus       207 ~~~~~~D~e~D~~~G~~Tl  225 (308)
                      .+||+.|.|.||.+.+|..
T Consensus        63 ~iND~~D~D~Dr~~prk~~   81 (282)
T PRK12875         63 GVNDVFDADTDELNPKKDR   81 (282)
T ss_pred             cchhhhhhhccccCCCccC
Confidence            4799999999999887763

>PLN00012 chlorophyll synthetase; Provisional

Probab=89.77  E-value=4.3  Score=38.54  Aligned_cols=42  Identities=17%  Similarity=-0.100  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhcCCCChhhhHhcCCcccceeec---chhhHHHHHH
Q psy14930        198 VALNTEAILHSNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAF  240 (308)
Q Consensus       198 ~~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~  240 (308)
                      ..+...+....||+-|.|.|++++ ++=|+.=|   ++.+......
T Consensus       132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~  176 (375)
T PLN00012        132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV  176 (375)
T ss_pred             HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHH
Confidence            334556678899999999998876 33333334   4444443333

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=89.43  E-value=14  Score=33.57  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=34.9

Q ss_pred             CCcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHH
Q psy14930        186 RWEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       186 ~~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~  245 (308)
                      ..++..+ +..+...+...+....||..|+|-|+++.| +.=|.   ++.++.+..+...+..++
T Consensus        32 ~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~   96 (279)
T PRK12869         32 GVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG   96 (279)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            3444333 334445566777789999999999998654 23333   344455544443333333

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.19  E-value=4.1  Score=37.27  Aligned_cols=37  Identities=19%  Similarity=0.039  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhhcCCCChhhhHhcCCc-ccceeecc
Q psy14930        195 ALPVALNTEAILHSNNTRDLESDRQVGIV-TVAILLGQ  231 (308)
Q Consensus       195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~lG~  231 (308)
                      .+...+...+-...||+.|+|-|+++.|. .=|.-=|+
T Consensus        52 ~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~   89 (290)
T PRK12870         52 ILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR   89 (290)
T ss_pred             HHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence            33444556777889999999999865542 34444443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.17  E-value=7.3  Score=35.40  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930        195 ALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ  231 (308)
Q Consensus       195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~  231 (308)
                      .+...+...+....||..|+|-|++..| ++=|..=|+
T Consensus        51 ~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~   88 (285)
T PRK12847         51 IIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGA   88 (285)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCC
Confidence            3344556677788999999999997554 344544453

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=89.02  E-value=8.7  Score=35.23  Aligned_cols=49  Identities=20%  Similarity=0.065  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeec---chhhHHHHHHHH
Q psy14930        194 YALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLG---QSYSHVYYAFLL  242 (308)
Q Consensus       194 ~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG---~~~a~~l~~~l~  242 (308)
                      ..+...+...+....||+.|+|-|+++.| |.=|.-=|   ++.|..+..++.
T Consensus        49 ~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~  101 (294)
T PRK12873         49 IILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLL  101 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            34445566677789999999999998876 46665555   444444443333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=88.79  E-value=16  Score=33.00  Aligned_cols=35  Identities=26%  Similarity=0.049  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccc
Q psy14930        192 ICYALPVALNTEAILHSNNTRDLESDRQVGI-VTVA  226 (308)
Q Consensus       192 ~l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~  226 (308)
                      +...+...+...+....||..|+|.|+.+.+ |+.+
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            3444455566778888999999999997643 4433

>PRK08238 hypothetical protein; Validated

Probab=88.59  E-value=3.5  Score=40.50  Aligned_cols=54  Identities=22%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChhhhHhcC-Cccccee---ecchhhHHHHHHHHHHHH
Q psy14930        193 CYALPVALNTEAILHSNNTRDLESDRQVG-IVTVAIL---LGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G-~~Tl~v~---lG~~~a~~l~~~l~~~~~  246 (308)
                      +..+.+++...+....||+-|+|.||++- +|.=|.-   +..+.+..+...+..++.
T Consensus       230 ~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~  287 (479)
T PRK08238        230 LAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGL  287 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34445667778889999999999999984 3444544   445555555444444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=88.56  E-value=5.4  Score=36.25  Aligned_cols=37  Identities=22%  Similarity=0.096  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930        195 ALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ  231 (308)
Q Consensus       195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~  231 (308)
                      .+...+...+....||+.|+|-|++..| +.=|.-=|+
T Consensus        46 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~   83 (281)
T TIGR01474        46 TVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA   83 (281)
T ss_pred             HHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence            3334455677789999999999997654 234444453

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=88.04  E-value=19  Score=32.50  Aligned_cols=59  Identities=10%  Similarity=-0.004  Sum_probs=34.3

Q ss_pred             CcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHH
Q psy14930        187 WEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       187 ~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~  245 (308)
                      .++..+ +..+...+...+....||..|+|-|+++.| ++=|.   ++.+|.+..+...+..++
T Consensus        32 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g   95 (280)
T TIGR01473        32 VNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG   95 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            344333 334444556677789999999999997543 33343   334455555544444433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=87.91  E-value=8.9  Score=35.09  Aligned_cols=52  Identities=17%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHHH
Q psy14930        195 ALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~~  246 (308)
                      .+...+...+-...||+.|+|-|+++.| +.=|.   ++.+|.+..+...+..++.
T Consensus        50 ~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~  105 (296)
T PRK04375         50 LLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGF  105 (296)
T ss_pred             HHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            3344455667788999999999998643 22333   3445555555444443333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=87.89  E-value=18  Score=33.36  Aligned_cols=50  Identities=14%  Similarity=0.018  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhhcCCCChhhhHhcCC-cccceeec---chhhHHHHHHHHHHHH
Q psy14930        197 PVALNTEAILHSNNTRDLESDRQVGI-VTVAILLG---QSYSHVYYAFLLFIPY  246 (308)
Q Consensus       197 ~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG---~~~a~~l~~~l~~~~~  246 (308)
                      ...+...+....||..|+|-|+++.| |.=|.-=|   ++.+..+...+..++.
T Consensus        55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~  108 (306)
T PRK13362         55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGF  108 (306)
T ss_pred             HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            44556677789999999999997654 23344334   4455444444444333

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=87.82  E-value=7.9  Score=35.39  Aligned_cols=39  Identities=21%  Similarity=0.063  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccceeecc
Q psy14930        193 CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAILLGQ  231 (308)
Q Consensus       193 l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG~  231 (308)
                      +..+...+...+-...||+-|+|-|+++.| +.=|..=|+
T Consensus        46 ~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~   85 (291)
T PRK12886         46 WILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGL   85 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCC
Confidence            344445555666778999999999998763 223555553

>PLN02776 prenyltransferase

Probab=87.66  E-value=21  Score=33.50  Aligned_cols=59  Identities=5%  Similarity=0.004  Sum_probs=35.1

Q ss_pred             CcHHHH-HHHHHHHHHHHHHHhhcCCCChhhhHhcCC-cccce---eecchhhHHHHHHHHHHH
Q psy14930        187 WEWATI-CYALPVALNTEAILHSNNTRDLESDRQVGI-VTVAI---LLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       187 ~~~~~~-l~~l~~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~  245 (308)
                      .++..+ +..+...+...+-...||+-|+|-|++..| +.=|.   ++.++.+..+...+..++
T Consensus        26 ~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g   89 (341)
T PLN02776         26 IDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAG   89 (341)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            454333 344455566677789999999999988554 33344   444455555444444333

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=87.19  E-value=9.3  Score=34.69  Aligned_cols=48  Identities=19%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhcCCCChhhhHhcCC-cccceeec---chhhHHHHHHHHHHH
Q psy14930        198 VALNTEAILHSNNTRDLESDRQVGI-VTVAILLG---QSYSHVYYAFLLFIP  245 (308)
Q Consensus       198 ~~l~~~~~~~~~~~~D~e~D~~~G~-~Tl~v~lG---~~~a~~l~~~l~~~~  245 (308)
                      ..+...+-...||+.|+|-|++..| |.=|.-=|   ++.+..+...+..++
T Consensus        51 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~  102 (282)
T PRK12848         51 VFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA  102 (282)
T ss_pred             HHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            3455577789999999999986544 23343334   445555444444433

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=87.06  E-value=8.2  Score=36.02  Aligned_cols=45  Identities=22%  Similarity=0.070  Sum_probs=28.7

Q ss_pred             HHHhhcCCCChhhhHhcCCccccee---ecchhhHHHHHHHHHHHHHHH
Q psy14930        204 AILHSNNTRDLESDRQVGIVTVAIL---LGQSYSHVYYAFLLFIPYIVF  249 (308)
Q Consensus       204 ~~~~~~~~~D~e~D~~~G~~Tl~v~---lG~~~a~~l~~~l~~~~~~~~  249 (308)
                      +....||+-|+|.|+.++ ||=|..   +.+|.++.+...+..++..+.
T Consensus        65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg  112 (331)
T PRK12392         65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLG  112 (331)
T ss_pred             HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999765 444443   345666666655555544333

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=87.02  E-value=8.2  Score=35.33  Aligned_cols=42  Identities=14%  Similarity=-0.059  Sum_probs=27.3

Q ss_pred             hcCCCcHHHHHHHH-HHHHHHHHHHhhcCCCChhhhHhcCCcc
Q psy14930        183 QTGRWEWATICYAL-PVALNTEAILHSNNTRDLESDRQVGIVT  224 (308)
Q Consensus       183 ~~~~~~~~~~l~~l-~~~l~~~~~~~~~~~~D~e~D~~~G~~T  224 (308)
                      +.+++++...+..+ ...+...+....||..|.|.|+...+||
T Consensus        33 ~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt   75 (296)
T PRK05951         33 LFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT   75 (296)
T ss_pred             hcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence            34677776655444 3445567778999999977766655433

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=86.60  E-value=7.9  Score=35.08  Aligned_cols=46  Identities=15%  Similarity=0.031  Sum_probs=28.4

Q ss_pred             HHHHHHHHhhcCCCChhhhHhcCCcccce---eecchhhHHHHHHHHHHH
Q psy14930        199 ALNTEAILHSNNTRDLESDRQVGIVTVAI---LLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       199 ~l~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~  245 (308)
                      .+...+....||.-|+|.|++++ ++=|+   ++-+|.++.+...+..++
T Consensus        48 ~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~   96 (283)
T TIGR01476        48 PLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG   96 (283)
T ss_pred             HHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            34556667899999999999876 23333   334555555544444333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=86.48  E-value=6.6  Score=36.30  Aligned_cols=46  Identities=17%  Similarity=0.034  Sum_probs=29.1

Q ss_pred             HHHHHHHhhcCCCChhhhHhcCCcccce---eecchhhHHHHHHHHHHHH
Q psy14930        200 LNTEAILHSNNTRDLESDRQVGIVTVAI---LLGQSYSHVYYAFLLFIPY  246 (308)
Q Consensus       200 l~~~~~~~~~~~~D~e~D~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~~  246 (308)
                      +...+....||+.|.|.|++++ ++=|.   ++.++.+..+...+..++.
T Consensus        76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~  124 (314)
T PRK07566         76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGL  124 (314)
T ss_pred             HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence            3456667899999999999765 22333   4455666665554444433

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=85.79  E-value=29  Score=31.99  Aligned_cols=32  Identities=19%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             hcCCCChhhhHhcCCcccceeec---chhhHHHHHH
Q psy14930        208 SNNTRDLESDRQVGIVTVAILLG---QSYSHVYYAF  240 (308)
Q Consensus       208 ~~~~~D~e~D~~~G~~Tl~v~lG---~~~a~~l~~~  240 (308)
                      .||+.|+|-|+.+ |++-|+-=|   ++.++.+...
T Consensus        72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~  106 (308)
T PRK12887         72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVII  106 (308)
T ss_pred             HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHH
Confidence            8999999999965 466665444   4444444433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=85.05  E-value=18  Score=33.03  Aligned_cols=37  Identities=11%  Similarity=0.085  Sum_probs=23.5

Q ss_pred             CCcHHHHHH-HHHHHHHHHHHHhhcCCCChhhhHhcCC
Q psy14930        186 RWEWATICY-ALPVALNTEAILHSNNTRDLESDRQVGI  222 (308)
Q Consensus       186 ~~~~~~~l~-~l~~~l~~~~~~~~~~~~D~e~D~~~G~  222 (308)
                      ..++..... .+...+...+-...||.-|+|-|+++.|
T Consensus        43 ~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R   80 (291)
T PRK12874         43 WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPR   80 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence            345443333 3333344555678899999999998853

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.05  E-value=14  Score=34.23  Aligned_cols=27  Identities=19%  Similarity=0.043  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHhhcCCCChhhhHhcC
Q psy14930        195 ALPVALNTEAILHSNNTRDLESDRQVG  221 (308)
Q Consensus       195 ~l~~~l~~~~~~~~~~~~D~e~D~~~G  221 (308)
                      .+...+...+-...||.-|+|-|++..
T Consensus        78 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~  104 (314)
T PRK12878         78 FVGAIAMRGAGCTYNDIVDRDIDAKVA  104 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence            334445566778899999999998754

>PRK13592 ubiA prenyltransferase; Provisional

Probab=83.98  E-value=12  Score=34.34  Aligned_cols=49  Identities=12%  Similarity=0.067  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhhcCCCChhhhHhcC--CcccceeecchhhHHHHHHHHHHH
Q psy14930        197 PVALNTEAILHSNNTRDLESDRQVG--IVTVAILLGQSYSHVYYAFLLFIP  245 (308)
Q Consensus       197 ~~~l~~~~~~~~~~~~D~e~D~~~G--~~Tl~v~lG~~~a~~l~~~l~~~~  245 (308)
                      ...+.+.+-..+||..|+|-||.+.  |.-..=+..+|.++.+...+..++
T Consensus        54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~  104 (299)
T PRK13592         54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVS  104 (299)
T ss_pred             HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence            3444456667899999999998664  222223445566665554443333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=82.28  E-value=39  Score=30.76  Aligned_cols=21  Identities=24%  Similarity=-0.010  Sum_probs=16.8

Q ss_pred             hhcCCCChhhhHhcCCcccce
Q psy14930        207 HSNNTRDLESDRQVGIVTVAI  227 (308)
Q Consensus       207 ~~~~~~D~e~D~~~G~~Tl~v  227 (308)
                      -.||.-|.|.|+.+.+|.-+.
T Consensus        52 ~~Ndy~D~~~d~dn~r~~g~~   72 (282)
T PRK13105         52 GINDVFDYESDLRNPRKGGVE   72 (282)
T ss_pred             hhhhhhhhhcCCCCcccCCCC
Confidence            449999999999988776553

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=80.43  E-value=38  Score=31.21  Aligned_cols=60  Identities=12%  Similarity=-0.005  Sum_probs=31.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCceecccCCHHHHHHHHHHHHHHH
Q psy14930         54 QFSWIILFVTLLTVISVHCAGNVVNTYYDYVLGIDTSRRSDDRTLVDHILSESELVSLGVMLYLVS  119 (308)
Q Consensus        54 ~~~~~~~ll~~l~~~~~~~~~n~~Ndy~D~~~g~D~~~~~~~r~l~~g~ls~~~~~~~~~~~~~~~  119 (308)
                      .+++..++.++... +........||+-|+|+  |+  +.++|.++- ++.++.+.++...+...+
T Consensus       171 ~~~~~~~~~sl~~g-ll~~~IL~~Nn~rD~e~--D~--~~Gk~TL~v-~lG~~~a~~ly~~l~~~a  230 (304)
T PRK07419        171 SWSLIPLAASIILG-LATSLILFCSHFHQVED--DL--AAGKRSPIV-RLGTKRGAQLLPWIVGLI  230 (304)
T ss_pred             CCCHHHHHHHHHHH-HHHHHHHHHcCCcchhh--HH--HcCCcceee-eechHhHHHHHHHHHHHH
Confidence            34444443333322 45567788999999984  53  233444442 244555555544443333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00