Psyllid ID: psy14955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESHDK
Secondary Structure (PSIPRED)
cEEEEEcccEEEEEccccEEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccEEEEEccccHEEEccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
TFVVVSKGKDIFRFSatdalwvldpfnpirRVAIYILVHPLFSLFIITTILTNCIlmimpgtptiesteVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMglqdsrgkksdeshdk
Flexible Loop (DISEMBL)
tfvvvskgkdifrfsatdalwvldPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKtvaivpglktiVGAVIESVKNLRDVIILTMFSLSVFALmglqdsrgkksdeshdk
Low Complexity Region (SEG)
TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESHDK
Disordered region (IsUnstruct)
**VVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGL**************
Disordered Region (DISOPRED)
TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDE****
Disordered Region (DISEMBL)
TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ*************
Disordered Region (DISPRO)
TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESHDK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESHDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
P35500	2131	Sodium channel protein pa	no	N/A	0.832	0.074	0.943	8e-92
P35498	2009	Sodium channel protein ty	yes	N/A	0.931	0.088	0.670	5e-66
P04774	2009	Sodium channel protein ty	yes	N/A	0.931	0.088	0.670	5e-66
P08104	1951	Sodium channel protein ty	no	N/A	0.931	0.091	0.664	4e-65
Q99250	2005	Sodium channel protein ty	no	N/A	0.931	0.088	0.664	8e-65
Q9NY46	2000	Sodium channel protein ty	no	N/A	0.931	0.089	0.653	3e-64
P04775	2005	Sodium channel protein ty	no	N/A	0.931	0.088	0.653	1e-63
Q15858	1988	Sodium channel protein ty	no	N/A	0.931	0.089	0.648	2e-63
Q62205	1984	Sodium channel protein ty	no	N/A	0.931	0.089	0.642	3e-63
P15390	1840	Sodium channel protein ty	no	N/A	0.931	0.096	0.653	3e-63

>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para PE=2 SV=3

 Score =  335 bits (860), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 168/178 (94%), Positives = 173/178 (97%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVVVSKGKDIFRFSA+ A+W+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 114 TFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 173

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPT+ESTEVIFTGIYTFESAVKVMARGFIL  FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 174 TTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMGIDL 233

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 234 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 291

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)

>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens GN=SCN1A PE=1 SV=2

 Score =  250 bits (638), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILVH LFS+ I+ TILTNC+ M M 
Sbjct: 89  TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMS 148

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct: 149 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 208

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus GN=Scn1a PE=2 SV=1

 Score =  250 bits (638), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILVH LFS+ I+ TILTNC+ M M 
Sbjct: 89  TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMS 148

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct: 149 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 208

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus GN=Scn3a PE=1 SV=1

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV++KGK IFRFSAT AL++L P NP+R++AI ILVH LFS+ I+ TILTNC+ M + 
Sbjct: 89  TFVVLNKGKAIFRFSATSALYILTPLNPVRKIAIKILVHSLFSMLIMCTILTNCVFMTLS 148

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI +AYVT  +D
Sbjct: 149 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFSVIVMAYVTEFVD 208

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A PE=1 SV=3

 Score =  246 bits (627), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 148/179 (82%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK I RFSAT AL++L PFNPIR++AI ILVH LF++ I+ TILTNC+ M M 
Sbjct: 90  TFIVLNKGKAISRFSATPALYILTPFNPIRKLAIKILVHSLFNMLIMCTILTNCVFMTMS 149

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct: 150 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 209

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 210 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 268

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens GN=SCN3A PE=1 SV=2

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 148/179 (82%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK IFRFSAT AL++L P NP+R++AI ILVH LFS+ I+ TILTNC+ M + 
Sbjct: 89  TFIVMNKGKAIFRFSATSALYILTPLNPVRKIAIKILVHSLFSMLIMCTILTNCVFMTLS 148

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI +AYVT  + 
Sbjct: 149 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFSVIVMAYVTEFVS 208

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus GN=Scn2a PE=1 SV=1

 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 148/179 (82%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK I RFSAT AL++L PFNPIR++AI ILVH LF++ I+ TILTNC+ M M 
Sbjct: 90  TFIVLNKGKAISRFSATSALYILTPFNPIRKLAIKILVHSLFNVLIMCTILTNCVFMTMS 149

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF LE FT+LR+ WNWLDF VI  AYVT  ++
Sbjct: 150 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRNPWNWLDFTVITFAYVTEFVN 209

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 210 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 268

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alpha OS=Homo sapiens GN=SCN9A PE=1 SV=3

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK IFRF+AT AL++L PF+P+RR++I ILVH LFS+ I+ TILTNCI M M 
Sbjct: 87  TFIVLNKGKTIFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMN 146

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES VK++ARGF +  FT+LRD WNWLDF+VI  AY+T  ++
Sbjct: 147 NPPDWTKNVEYTFTGIYTFESLVKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVN 206

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 207 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 265

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Homo sapiens (taxid: 9606)

>sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alpha OS=Mus musculus GN=Scn9a PE=1 SV=2

 Score =  241 bits (614), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK IFRF+AT AL++L PF+P+RR++I ILVH LFS+ I+ TILTNCI M M 
Sbjct: 87  TFIVLNKGKAIFRFNATPALYMLSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMS 146

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P   ++ E  FTGIYTFES +K++ARGF +  FT+LRD WNWLDF+VI  AY+T  ++
Sbjct: 147 NPPDWTKNVEYTFTGIYTFESLIKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVN 206

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 207 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 265

Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Mus musculus (taxid: 10090)

>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus GN=Scn4a PE=2 SV=1

 Score =  241 bits (614), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 149/179 (83%), Gaps = 1/179 (0%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TF+V++KGK IFRFSAT AL++L PF+ +RRVAI +L+H LFS+FI+ TILTNC+ M M 
Sbjct: 92  TFIVLNKGKAIFRFSATPALYLLSPFSIVRRVAIKVLIHALFSMFIMITILTNCVFMTMS 151

Query: 61  GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
             P+  +  E  FTGIYTFES +K++ARGF ++ FT+LRD WNWLDF VI +AYVT  +D
Sbjct: 152 NPPSWSKHVEYTFTGIYTFESLIKMLARGFCIDDFTFLRDPWNWLDFSVITMAYVTEFVD 211

Query: 120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           LGN++ALRTFRVLRALKT+ ++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct: 212 LGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALVGLQ 270

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
201023287	2084	voltage-gated sodium channel alpha subun	0.879	0.080	0.960	2e-92
1657986	2031	para sodium channel [Blattella germanica	0.858	0.080	0.960	2e-92
148277534	2084	TPA: voltage-gated sodium channel alpha	0.879	0.080	0.960	2e-92
1657984	2031	para sodium channel [Blattella germanica	0.858	0.080	0.960	2e-92
148277532	2084	TPA: voltage-gated sodium channel alpha	0.879	0.080	0.960	2e-92
201023289	2084	voltage-gated sodium channel alpha subun	0.879	0.080	0.960	2e-92
350409729	2044	PREDICTED: sodium channel protein para-l	0.879	0.082	0.955	2e-92
340718624	2044	PREDICTED: LOW QUALITY PROTEIN: sodium c	0.879	0.082	0.955	2e-92
259906449	2044	sodium channel protein paralytic [Apis m	0.879	0.082	0.955	2e-92
259906457	2045	paralytic A [Tribolium castaneum] gi|258	0.879	0.082	0.955	3e-92

>gi|201023287|ref|NP_001128389.1| voltage-gated sodium channel alpha subunit isoform l [Nasonia vitripennis]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDALW+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 102 TFVVISKGKDIFRFSATDALWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 161

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 162 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 221

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 222 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 279

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1657986|gb|AAC47484.1| para sodium channel [Blattella germanica]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVVVSKGKDIFRFSATDA+W+LDPFNPIRRVAIYILVHPLFSLFIITTILTNCI MIMP
Sbjct: 102 TFVVVSKGKDIFRFSATDAMWILDPFNPIRRVAIYILVHPLFSLFIITTILTNCIFMIMP 161

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 162 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 221

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 222 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 279

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148277534|tpe|CAM31896.1| TPA: voltage-gated sodium channel alpha subunit [Nasonia vitripennis]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDALW+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 102 TFVVISKGKDIFRFSATDALWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 161

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 162 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 221

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 222 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 279

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1657984|gb|AAC47483.1| para sodium channel [Blattella germanica]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVVVSKGKDIFRFSATDA+W+LDPFNPIRRVAIYILVHPLFSLFIITTILTNCI MIMP
Sbjct: 102 TFVVVSKGKDIFRFSATDAMWILDPFNPIRRVAIYILVHPLFSLFIITTILTNCIFMIMP 161

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 162 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 221

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 222 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 279

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148277532|tpe|CAM31895.1| TPA: voltage-gated sodium channel alpha subunit [Nasonia vitripennis]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDALW+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 102 TFVVISKGKDIFRFSATDALWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 161

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 162 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 221

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 222 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 279

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201023289|ref|NP_001128390.1| voltage-gated sodium channel alpha subunit isoform k [Nasonia vitripennis]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDALW+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 102 TFVVISKGKDIFRFSATDALWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 161

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 162 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 221

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 222 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 279

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409729|ref|XP_003488828.1| PREDICTED: sodium channel protein para-like [Bombus impatiens]

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDA+W+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 113 TFVVISKGKDIFRFSATDAMWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 172

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 173 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 232

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 233 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 290

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718624|ref|XP_003397764.1| PREDICTED: LOW QUALITY PROTEIN: sodium channel protein para-like [Bombus terrestris]

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDA+W+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 113 TFVVISKGKDIFRFSATDAMWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 172

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 173 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 232

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 233 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 290

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|259906449|ref|NP_001159377.1| sodium channel protein paralytic [Apis mellifera] gi|258674487|gb|ACV87000.1| paralytic [Apis mellifera]

 Score =  343 bits (879), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVV+SKGKDIFRFSATDA+W+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 113 TFVVISKGKDIFRFSATDAMWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 172

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPTIESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 173 TTPTIESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 232

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 233 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 290

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|259906457|ref|NP_001159380.1| paralytic A [Tribolium castaneum] gi|258674491|gb|ACV87002.1| paralytic A [Tribolium castaneum]

 Score =  342 bits (878), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 175/178 (98%)

Query: 1   TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
           TFVVVSKGKDIFRFSAT+ALW+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct: 113 TFVVVSKGKDIFRFSATNALWILDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 172

Query: 61  GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
            TPT+ESTEVIFTGIYTFESAVKVMARGFIL+ FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct: 173 TTPTVESTEVIFTGIYTFESAVKVMARGFILQPFTYLRDAWNWLDFVVIALAYVTMGIDL 232

Query: 121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct: 233 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 290

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
FB|FBgn0264255	2131	para "paralytic" [Drosophila m	0.931	0.083	0.943	2.1e-82
UNIPROTKB|A8K0U1	503	SCN2A "cDNA FLJ75537, highly s	0.931	0.353	0.664	1.9e-60
UNIPROTKB|E1C4R5	2006	SCN1A "Uncharacterized protein	0.931	0.088	0.670	4.4e-60
RGD|69364	2009	Scn1a "sodium channel, voltage	0.931	0.088	0.670	4.4e-60
UNIPROTKB|P35498	2009	SCN1A "Sodium channel protein	0.931	0.088	0.670	4.4e-60
UNIPROTKB|F1NMI3	1149	SCN3A "Uncharacterized protein	0.931	0.154	0.668	8.3e-60
UNIPROTKB|E7EUE6	1364	SCN3A "Sodium channel protein	0.931	0.130	0.659	8.6e-60
RGD|3635	1951	Scn3a "sodium channel, voltage	0.931	0.091	0.664	1.4e-59
UNIPROTKB|E1C4S3	1984	SCN1A "Uncharacterized protein	0.931	0.089	0.664	1.5e-59
UNIPROTKB|F1PXD7	1998	SCN1A "Uncharacterized protein	0.931	0.089	0.664	5.1e-59

FB|FBgn0264255 para "paralytic" [Drosophila melanogaster (taxid:7227)]

 Score = 840 (300.8 bits), Expect = 2.1e-82, P = 2.1e-82
 Identities = 168/178 (94%), Positives = 173/178 (97%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TFVVVSKGKDIFRFSA+ A+W+LDPFNPIRRVAIYILVHPLFSLFIITTIL NCILMIMP
Sbjct:   114 TFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIMP 173

Query:    61 GTPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL 120
              TPT+ESTEVIFTGIYTFESAVKVMARGFIL  FTYLRDAWNWLDF+VIALAYVTMGIDL
Sbjct:   174 TTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMGIDL 233

Query:   121 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ
Sbjct:   234 GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 291

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0009612 "response to mechanical stimulus" evidence=IGI;IMP

GO:0006814 "sodium ion transport" evidence=NAS;IDA

GO:0005248 "voltage-gated sodium channel activity" evidence=ISS;NAS;IDA

GO:0005887 "integral to plasma membrane" evidence=NAS;IDA

GO:0046684 "response to pyrethroid" evidence=NAS;IMP

GO:0046680 "response to DDT" evidence=IDA;NAS;IMP

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=NAS;IMP

GO:0001518 "voltage-gated sodium channel complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=NAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IDA

UNIPROTKB|A8K0U1 SCN2A "cDNA FLJ75537, highly similar to Homo sapiens sodium channel, voltage-gated, type II, alpha 2 (SCN2A2), mRNA" [Homo sapiens (taxid:9606)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 119/179 (66%), Positives = 148/179 (82%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK I RFSAT AL++L PFNPIR++AI ILVH LF++ I+ TILTNC+ M M 
Sbjct:    90 TFIVLNKGKAISRFSATPALYILTPFNPIRKLAIKILVHSLFNMLIMCTILTNCVFMTMS 149

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct:   150 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 209

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   210 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 268

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C4R5 SCN1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 630 (226.8 bits), Expect = 4.4e-60, P = 4.4e-60
 Identities = 120/179 (67%), Positives = 149/179 (83%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILVH LFS+ I+ TILTNC+ M M 
Sbjct:    90 TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMS 149

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct:   150 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 209

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   210 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 268

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0050884 "neuromuscular process controlling posture" evidence=IEA

RGD|69364 Scn1a "sodium channel, voltage-gated, type I, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 630 (226.8 bits), Expect = 4.4e-60, P = 4.4e-60
 Identities = 120/179 (67%), Positives = 149/179 (83%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILVH LFS+ I+ TILTNC+ M M 
Sbjct:    89 TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMS 148

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct:   149 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 208

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

GO:0001508 "regulation of action potential" evidence=ISO

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA;IDA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA;IC;ISO;IMP;IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006814 "sodium ion transport" evidence=ISO

GO:0007628 "adult walking behavior" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0019227 "neuronal action potential propagation" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=ISO;IMP;IDA;TAS

GO:0030018 "Z disc" evidence=ISO;ISS

GO:0030315 "T-tubule" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0031402 "sodium ion binding" evidence=IDA

GO:0033268 "node of Ranvier" evidence=ISO

GO:0034706 "sodium channel complex" evidence=ISO

GO:0034765 "regulation of ion transmembrane transport" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043194 "axon initial segment" evidence=ISO

GO:0050884 "neuromuscular process controlling posture" evidence=ISO

UNIPROTKB|P35498 SCN1A "Sodium channel protein type 1 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 4.4e-60, P = 4.4e-60
 Identities = 120/179 (67%), Positives = 149/179 (83%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILVH LFS+ I+ TILTNC+ M M 
Sbjct:    89 TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMS 148

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct:   149 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 208

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0050884 "neuromuscular process controlling posture" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0030018 "Z disc" evidence=ISS

UNIPROTKB|F1NMI3 SCN3A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 622 (224.0 bits), Expect = 8.3e-60, P = 8.3e-60
 Identities = 121/181 (66%), Positives = 150/181 (82%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHP--LFSLFIITTILTNCILMI 58
             TF+V++KGK IFRFSAT AL++L PFNPIR++AI ILVH   LFS+ I+ TILTNC+ M 
Sbjct:    97 TFIVLNKGKAIFRFSATSALYILTPFNPIRKIAIKILVHSSTLFSMLIMCTILTNCVFMT 156

Query:    59 MPGTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMG 117
             M   P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI +AYVT  
Sbjct:   157 MSNPPDWTKNVEYTFTGIYTFESLIKILARGFCLEGFTFLRDPWNWLDFSVILMAYVTEF 216

Query:   118 IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGL 177
             +DLGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GL
Sbjct:   217 VDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGL 276

Query:   178 Q 178
             Q
Sbjct:   277 Q 277

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

UNIPROTKB|E7EUE6 SCN3A "Sodium channel protein type 3 subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 624 (224.7 bits), Expect = 8.6e-60, P = 8.6e-60
 Identities = 118/179 (65%), Positives = 149/179 (83%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK IFRFSAT AL++L P NP+R++AI ILVH LFS+ I+ TILTNC+ M + 
Sbjct:    89 TFIVMNKGKAIFRFSATSALYILTPLNPVRKIAIKILVHSLFSMLIMCTILTNCVFMTLS 148

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI +AYVT  +D
Sbjct:   149 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFSVIVMAYVTEFVD 208

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

RGD|3635 Scn3a "sodium channel, voltage-gated, type III, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 625 (225.1 bits), Expect = 1.4e-59, P = 1.4e-59
 Identities = 119/179 (66%), Positives = 149/179 (83%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TFVV++KGK IFRFSAT AL++L P NP+R++AI ILVH LFS+ I+ TILTNC+ M + 
Sbjct:    89 TFVVLNKGKAIFRFSATSALYILTPLNPVRKIAIKILVHSLFSMLIMCTILTNCVFMTLS 148

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI +AYVT  +D
Sbjct:   149 NPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWNWLDFSVIVMAYVTEFVD 208

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA;IDA;TAS

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0007399 "nervous system development" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0016020 "membrane" evidence=ISO

GO:0019228 "regulation of action potential in neuron" evidence=IDA

GO:0019233 "sensory perception of pain" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0031402 "sodium ion binding" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046684 "response to pyrethroid" evidence=IDA

GO:0071236 "cellular response to antibiotic" evidence=IDA

UNIPROTKB|E1C4S3 SCN1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 625 (225.1 bits), Expect = 1.5e-59, P = 1.5e-59
 Identities = 119/179 (66%), Positives = 149/179 (83%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILVH LFS+ I+ TILTNC+ M M 
Sbjct:    90 TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILTNCVFMTMS 149

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  ++
Sbjct:   150 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVN 209

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   210 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 268

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

UNIPROTKB|F1PXD7 SCN1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 620 (223.3 bits), Expect = 5.1e-59, P = 5.1e-59
 Identities = 119/179 (66%), Positives = 148/179 (82%)

Query:     1 TFVVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP 60
             TF+V++KGK IFRFSAT AL++L PFNP+R++AI ILV  LFS+ I+ TILTNC+ M M 
Sbjct:    89 TFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVPTLFSMLIMCTILTNCVFMTMS 148

Query:    61 GTPT-IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID 119
               P   ++ E  FTGIYTFES +K++ARGF LE FT+LRD WNWLDF VI  AYVT  +D
Sbjct:   149 NPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVD 208

Query:   120 LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LGN++ALRTFRVLRALKT++++PGLKTIVGA+I+SVK L DV+ILT+F LSVFAL+GLQ
Sbjct:   209 LGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQ 267

GO:0050884 "neuromuscular process controlling posture" evidence=IEA

GO:0043194 "axon initial segment" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0033268 "node of Ranvier" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0019228 "regulation of action potential in neuron" evidence=IEA

GO:0019227 "neuronal action potential propagation" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P04774	SCN1A_RAT	No assigned EC number	0.6703	0.9319	0.0886	yes	N/A
P35500	SCNA_DROME	No assigned EC number	0.9438	0.8324	0.0746	no	N/A
P35498	SCN1A_HUMAN	No assigned EC number	0.6703	0.9319	0.0886	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	191
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	6e-18

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 77.3 bits (191), Expect = 6e-18
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 8/115 (6%)

Query: 69  EVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTM-----GIDLGNL 123
           + +FT I+T E  +K +A GF      Y R  WN LDF+V+  + V++     G D G L
Sbjct: 3   DYVFTVIFTLEMLLKFIALGFK---RKYFRSPWNILDFLVVLPSLVSLILFLLGEDSGLL 59

Query: 124 AALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
             LR  R+LR L+ +   PGL+T++ ++  S+K+L ++++L +  L +FA++G+Q
Sbjct: 60  RVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQ 114

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
KOG2302|consensus	1956		99.96
KOG2301|consensus	1592		99.93
KOG2301|consensus	1592		99.92
KOG2302|consensus	1956		99.92
KOG3713|consensus	477		99.84
KOG1545|consensus	507		99.74
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.65
KOG4390|consensus	632		99.34
KOG1419|consensus	654		99.09
PLN03223	1634	Polycystin cation channel protein; Provisional	98.99
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	98.67
KOG3599|consensus	798		98.58
PLN03192	823	Voltage-dependent potassium channel; Provisional	97.66
TIGR00870	743	trp transient-receptor-potential calcium channel p	97.48
KOG3609|consensus	822		95.3
KOG3614|consensus	1381		94.37
KOG1545|consensus	507		93.44
KOG1420|consensus	1103		93.13
KOG0498|consensus	727		92.01

>KOG2302|consensus

Probab=99.96  E-value=3.6e-30  Score=229.71  Aligned_cols=183  Identities=26%  Similarity=0.465  Sum_probs=165.9

Q ss_pred             CCCccccccCCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc---------cchhhhHHHHHHH
Q psy14955          7 KGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT---------IESTEVIFTGIYT   77 (191)
Q Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~---------~~~~~~~~~~iF~   77 (191)
                      |+.++-..+..=+.++|+|.|++|..|++++.|+.|+.+++++|++|++.+++|.+..         +..-+++|+.+|.
T Consensus      1091 ~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV 1170 (1956)
T KOG2302|consen 1091 YKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFV 1170 (1956)
T ss_pred             cCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHH
Confidence            3444444455556678999999999999999999999999999999999999998876         5566799999999


Q ss_pred             HHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhcc---------CchhHHHHHHHhhhhhccccchhHHHHH
Q psy14955         78 FESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL---------GNLAALRTFRVLRALKTVAIVPGLKTIV  148 (191)
Q Consensus        78 ~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~---------~~~~~lr~~R~lR~~rl~~~~~~l~~l~  148 (191)
                      +|+.+|++|.|+.++..+|++|.||.+|++++.++++++.+..         +.++++|++|.+|++|.+.+-++++.+.
T Consensus      1171 ~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~glklVv 1250 (1956)
T KOG2302|consen 1171 VEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVV 1250 (1956)
T ss_pred             HHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHH
Confidence            9999999999999999999999999999999999999998822         2477889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy14955        149 GAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESH  189 (191)
Q Consensus       149 ~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~~~~  189 (191)
                      +++.+|+++++++.++..-++++|+++|+++|+|+++.|.-
T Consensus      1251 eTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g 1291 (1956)
T KOG2302|consen 1251 ETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLG 1291 (1956)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccc
Confidence            99999999999999999999999999999999999999863

>KOG2301|consensus

Probab=99.93  E-value=2.9e-26  Score=217.79  Aligned_cols=171  Identities=32%  Similarity=0.565  Sum_probs=158.7

Q ss_pred             cCCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc---------cchhhhHHHHHHHHHHHHHHH
Q psy14955         15 SATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT---------IESTEVIFTGIYTFESAVKVM   85 (191)
Q Consensus        15 ~~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~---------~~~~~~~~~~iF~~E~~lki~   85 (191)
                      .+.++.+..+++| .|+.|++++++.+|+.++..+|+++..+.+.|++..         +.+.|++|+.+|++|+++|++
T Consensus       816 ~~~~~~~~~~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~i  894 (1592)
T KOG2301|consen  816 GSVDSAKGKSWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWI  894 (1592)
T ss_pred             ccccccccccccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788888 999999999999999999999999999999988665         889999999999999999999


Q ss_pred             hccccccccccccccccchhHHHHHHHHHHHhhc---cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q psy14955         86 ARGFILESFTYLRDAWNWLDFIVIALAYVTMGID---LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVI  162 (191)
Q Consensus        86 a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~---~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~  162 (191)
                      |+|+.    .|++|.||++|++++..+++.+...   ....+.+|.+|++||+|.+++.+++|..+.++..++|++++++
T Consensus       895 a~Gf~----~y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~  970 (1592)
T KOG2301|consen  895 AYGFF----FYFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVL  970 (1592)
T ss_pred             HhHHH----HHHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence            99987    3999999999999999999999883   3467899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy14955        163 ILTMFSLSVFALMGLQDSRGKKSDESHD  190 (191)
Q Consensus       163 ~~l~~~~~ifaiiG~~lF~g~~~~~~~~  190 (191)
                      ++.++++++||++|+++|+|+++.|+.+
T Consensus       971 lV~li~~fiFai~gv~lF~Gkf~~C~d~  998 (1592)
T KOG2301|consen  971 LVCLIFWFIFAIMGVQLFAGKFYACNDP  998 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCceeccCC
Confidence            9999999999999999999999999875

>KOG2301|consensus

Probab=99.92  E-value=7.3e-26  Score=215.06  Aligned_cols=184  Identities=58%  Similarity=0.912  Sum_probs=177.1

Q ss_pred             EEEcCCCccccccCCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc-cchhhhHHHHHHHHHHH
Q psy14955          3 VVVSKGKDIFRFSATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT-IESTEVIFTGIYTFESA   81 (191)
Q Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~-~~~~~~~~~~iF~~E~~   81 (191)
                      ++.+|.+..++.++++++++++|.|+.|+.+.++.+||+|+.++...++.||+.++.+.++. ++..|+.++++|+.|.+
T Consensus        39 ~~~~k~~~~~~~~~~~~l~~~s~~n~~R~~~i~i~~~~~f~~~i~~ti~~ncv~~~~~~~~~~~~~~e~~f~~i~~~E~~  118 (1592)
T KOG2301|consen   39 GVLAKGKAIFRFSAISALLSLSPFNPIRSSAIKILVHPWFSLFILATIIANCVVMAMTPLNYWILAAEYTFLGIFTFESV  118 (1592)
T ss_pred             cccccccccCCCCcchhhhhcCcccchhhheeeeeccccHHHHHHHHHHHHeeeeccCCCCcchhhcceehhhHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999995555 99999999999999999


Q ss_pred             HHHHhccccccccccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q psy14955         82 VKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDV  161 (191)
Q Consensus        82 lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~  161 (191)
                      +|+.|+|+..++..|.+|+||++|+++++.+++....+...++.+|.+|++|++|++...++++...+++.++..++..+
T Consensus       119 ~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~~~~~lR~frvlr~lk~vs~~~~lk~~~~~ii~~~~~l~~~  198 (1592)
T KOG2301|consen  119 VKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLYNIRALRTFRVLRALKLVSGIPGLKTRVGALIKASKQLVDV  198 (1592)
T ss_pred             HHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhccccchhhhccccccchhhhccCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955        162 IILTMFSLSVFALMGLQDSRGKKSD  186 (191)
Q Consensus       162 ~~~l~~~~~ifaiiG~~lF~g~~~~  186 (191)
                      .++.++.+.+||++|+++|-|+.+.
T Consensus       199 ~~l~~f~~~ifa~igl~lf~g~l~~  223 (1592)
T KOG2301|consen  199 VILTFFFLSVFALIGLQLFMGRLTY  223 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchH
Confidence            9999999999999999999999854

>KOG2302|consensus

Probab=99.92  E-value=1.4e-24  Score=194.36  Aligned_cols=172  Identities=26%  Similarity=0.495  Sum_probs=159.9

Q ss_pred             CCcEEEeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc-----------cchhhhHHHHHHHHHHHHHH
Q psy14955         16 ATDALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT-----------IESTEVIFTGIYTFESAVKV   84 (191)
Q Consensus        16 ~~~~l~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~-----------~~~~~~~~~~iF~~E~~lki   84 (191)
                      +.-.+|+++++.+.|-+|-+.+-+|||+.+.+++|++||+.+.+..+-+           ++..|.++.++|.+|+++|+
T Consensus        55 ap~vffcl~qttrprswclr~vcnpwfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~km  134 (1956)
T KOG2302|consen   55 APIVFFCLRQTTRPRSWCLRMVCNPWFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKM  134 (1956)
T ss_pred             cceeEEEeccCCCchhHHHHhhccHHHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456889999999999999999999999999999999999999987765           78899999999999999999


Q ss_pred             HhccccccccccccccccchhHHHHHHHHHHHhhccC--chhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q psy14955         85 MARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG--NLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVI  162 (191)
Q Consensus        85 ~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~--~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~  162 (191)
                      +|.|. ++++-|..|.||.+||++++.+.+++..+..  +++..|..|++|++|.+++.++||.++.-+..++|.+++++
T Consensus       135 valgi-fgkkcylgdtwnrldffiv~agm~eysldlqnvslsairtvrvlrplrainrvpsmrilvtllldtlpmlgnvl  213 (1956)
T KOG2302|consen  135 VALGI-FGKKCYLGDTWNRLDFFIVMAGMVEYSLDLQNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVL  213 (1956)
T ss_pred             HHHhh-ccccccccCchhhhhhhheehhhhhhcccccccchhhhhhhhhhhhhhHhccCchHHHHHHHHHhhhhhhhhHH
Confidence            99995 7999999999999999999999999988655  47789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy14955        163 ILTMFSLSVFALMGLQDSRGKKSDES  188 (191)
Q Consensus       163 ~~l~~~~~ifaiiG~~lF~g~~~~~~  188 (191)
                      ++.+++++||+++|+|++.|.+...+
T Consensus       214 llcffvffifgivgvqlwagllrnrc  239 (1956)
T KOG2302|consen  214 LLCFFVFFIFGIVGVQLWAGLLRNRC  239 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999885543

>KOG3713|consensus

Probab=99.84  E-value=1.1e-19  Score=154.47  Aligned_cols=155  Identities=17%  Similarity=0.318  Sum_probs=138.5

Q ss_pred             CCCCHHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHhcCCCCc-------------------------cchhhhH
Q psy14955         24 DPFNPIRRVAIYILVHPL-------FSLFIITTILTNCILMIMPGTPT-------------------------IESTEVI   71 (191)
Q Consensus        24 ~~~~~~r~~~~~iv~s~~-------f~~~i~~~I~~n~i~~~~~~~~~-------------------------~~~~~~~   71 (191)
                      .+..+.|++++.++++|.       |.....++|+++++.+|+.+.|+                         +.++|.+
T Consensus       169 ~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~v  248 (477)
T KOG3713|consen  169 GRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETV  248 (477)
T ss_pred             CChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHH
Confidence            345569999999999874       88889999999999999877664                         6789999


Q ss_pred             HHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc---c----------CchhHHHHHHHhhhhhcc
Q psy14955         72 FTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID---L----------GNLAALRTFRVLRALKTV  138 (191)
Q Consensus        72 ~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~---~----------~~~~~lr~~R~lR~~rl~  138 (191)
                      |.++|++|+++|.+.   .+++.+|++++-|++|++++++.+++..+.   .          ..++++|++|++|++||.
T Consensus       249 Ci~WFT~E~llR~~~---~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLa  325 (477)
T KOG3713|consen  249 CIAWFTFEYLLRFLV---APNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLA  325 (477)
T ss_pred             HHHHHHHHHHHHHHc---CchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999   889999999999999999999999987762   1          136789999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14955        139 AIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSR  181 (191)
Q Consensus       139 ~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~  181 (191)
                      |++.++|.+..++.+|.++++-+++++..-+.+||.+..++=+
T Consensus       326 RhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek  368 (477)
T KOG3713|consen  326 RHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEK  368 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999998876643

>KOG1545|consensus

Probab=99.74  E-value=1.7e-17  Score=136.28  Aligned_cols=146  Identities=23%  Similarity=0.395  Sum_probs=124.5

Q ss_pred             CCCHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhcCCCCc---------------------------------
Q psy14955         25 PFNPIRRVAIYILVHP-------LFSLFIITTILTNCILMIMPGTPT---------------------------------   64 (191)
Q Consensus        25 ~~~~~r~~~~~iv~s~-------~f~~~i~~~I~~n~i~~~~~~~~~---------------------------------   64 (191)
                      |+|.+.+.++.+.+.|       .-..+..++|+++++..|+|+-|.                                 
T Consensus       169 P~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~  248 (507)
T KOG1545|consen  169 PRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGD  248 (507)
T ss_pred             CcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccc
Confidence            7889999999988765       366778888999999999987664                                 


Q ss_pred             ------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc----------------cCc
Q psy14955         65 ------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID----------------LGN  122 (191)
Q Consensus        65 ------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~----------------~~~  122 (191)
                            +-++|..|..+|+.|+++|..+   .++|..|++|..|++|++++++.++.+...                ...
T Consensus       249 ~~f~dPFFiVEt~CIiWFtfEllvRf~a---CPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAI  325 (507)
T KOG1545|consen  249 TKFTDPFFIVETLCIIWFTFELLVRFFA---CPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAI  325 (507)
T ss_pred             cccCCchHhHHHHHHHHHhHHHHHHHhc---CccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHH
Confidence                  4478999999999999999999   889999999999999999999999988761                113


Q ss_pred             hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955        123 LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFA  173 (191)
Q Consensus       123 ~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa  173 (191)
                      ++++|+.|++|++|+-|++++++.+.+++..|.++++.+++++++-+..||
T Consensus       326 LRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFs  376 (507)
T KOG1545|consen  326 LRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFS  376 (507)
T ss_pred             HHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            678888888999999999999999999999999999877766666555554

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.65  E-value=1.2e-15  Score=116.83  Aligned_cols=121  Identities=30%  Similarity=0.488  Sum_probs=104.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhccC-------chhHHHHHHHhhhhhccc
Q psy14955         67 STEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG-------NLAALRTFRVLRALKTVA  139 (191)
Q Consensus        67 ~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~-------~~~~lr~~R~lR~~rl~~  139 (191)
                      ++|.++..+|.+|.++|+.+.|+.  +.+|++++||++|+++++++.+.......       ..+..|++|.+|++|+.+
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~--~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~   78 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFK--RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLR   78 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG---GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccH--HHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccc
Confidence            478999999999999999999863  56999999999999999999777766221       367899999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy14955        140 IVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESH  189 (191)
Q Consensus       140 ~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~~~~  189 (191)
                      ..+.++....++.++.+.+...+.++.++++.||++|+++|++..++|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~  128 (200)
T PF00520_consen   79 RFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD  128 (200)
T ss_dssp             TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----
T ss_pred             ccccccccccccccccccccccccccccccccccchhheecccccccccc
Confidence            99999999999999999999999999999999999999999999876653

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG4390|consensus

Probab=99.34  E-value=2.1e-13  Score=113.49  Aligned_cols=158  Identities=19%  Similarity=0.278  Sum_probs=135.6

Q ss_pred             CCCCHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhcCCCCc-------------------cchhhhHHHHHHH
Q psy14955         24 DPFNPIRRVAIYILVHP-------LFSLFIITTILTNCILMIMPGTPT-------------------IESTEVIFTGIYT   77 (191)
Q Consensus        24 ~~~~~~r~~~~~iv~s~-------~f~~~i~~~I~~n~i~~~~~~~~~-------------------~~~~~~~~~~iF~   77 (191)
                      +....+|+++++-.++|       .|.+.+.+.|.++++.-..|+.|-                   +..+|..|..+|+
T Consensus       162 p~~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT  241 (632)
T KOG4390|consen  162 PAGLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFT  241 (632)
T ss_pred             cccchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEee
Confidence            34467999999999987       477778888888888766665442                   6678999999999


Q ss_pred             HHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhh-cc----CchhHHHHHHHhhhhhccccchhHHHHHHHHH
Q psy14955         78 FESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGI-DL----GNLAALRTFRVLRALKTVAIVPGLKTIVGAVI  152 (191)
Q Consensus        78 ~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~-~~----~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~  152 (191)
                      .|+++|.++   ++++.+|.+|...++|.+++++.+++++. +.    +.+-.+|++|++|++|.-|++.++|.+..++.
T Consensus       242 ~EYlLRL~a---APsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLK  318 (632)
T KOG4390|consen  242 GEYLLRLFA---APSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLK  318 (632)
T ss_pred             HHHHHHHHc---CchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHH
Confidence            999999999   78889999999999999999999998887 22    24557999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955        153 ESVKNLRDVIILTMFSLSVFALMGLQDSRGKK  184 (191)
Q Consensus       153 ~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~  184 (191)
                      .+..+++.+++-+..-+.|||.+..+.=+|.-
T Consensus       319 SCASELGFLlFSLtMAIIIFATvMfYAEKg~~  350 (632)
T KOG4390|consen  319 SCASELGFLLFSLTMAIIIFATVMFYAEKGSS  350 (632)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            99999999999999999999998887766654

>KOG1419|consensus

Probab=99.09  E-value=6.5e-10  Score=96.16  Aligned_cols=157  Identities=18%  Similarity=0.281  Sum_probs=120.8

Q ss_pred             HHHHHHHHhccc------chHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhcccc----
Q psy14955         29 IRRVAIYILVHP------LFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFI----   90 (191)
Q Consensus        29 ~r~~~~~iv~s~------~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~----   90 (191)
                      .+-++|++++.|      .|+.+++++++.+.++-++.+.++        +.++|++..++|.+|+++|+++.|..    
T Consensus        77 ~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYr  156 (654)
T KOG1419|consen   77 IQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYR  156 (654)
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            456788888876      388899999988888877776665        78899999999999999999998643    


Q ss_pred             --ccccccccccccchhHHHHHHHHHHHhhc-------cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q psy14955         91 --LESFTYLRDAWNWLDFIVIALAYVTMGID-------LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDV  161 (191)
Q Consensus        91 --~~~~~y~~~~wn~~D~i~i~~~~~~~~~~-------~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~  161 (191)
                        .++.+|-+.+..++|+++++.+..-+...       ...++.+|.+.++|.+|.=|+-...+.+...+..-..++.-.
T Consensus       157 G~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt  236 (654)
T KOG1419|consen  157 GWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITT  236 (654)
T ss_pred             cceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHH
Confidence              36778999999999999888886544442       224778888888888888787777777777766666666544


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955        162 IILTMFSLSVFALMGLQDSRGKKSD  186 (191)
Q Consensus       162 ~~~l~~~~~ifaiiG~~lF~g~~~~  186 (191)
                      . .+.++..||+..-+|+-+.....
T Consensus       237 ~-YIGFL~LIfsSflVYLaEKd~~~  260 (654)
T KOG1419|consen  237 W-YIGFLVLIFSSFLVYLAEKDAQG  260 (654)
T ss_pred             H-HHHHHHHHHHHHHHHHhhccccc
Confidence            4 44455588999999987665443

>PLN03223 Polycystin cation channel protein; Provisional

Probab=98.99  E-value=5e-09  Score=98.41  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHhccccc-cccccccccccchhHHHHHHHHHHHhhc----------c--------------------
Q psy14955         72 FTGIYTFESAVKVMARGFIL-ESFTYLRDAWNWLDFIVIALAYVTMGID----------L--------------------  120 (191)
Q Consensus        72 ~~~iF~~E~~lki~a~G~~~-~~~~y~~~~wn~~D~i~i~~~~~~~~~~----------~--------------------  120 (191)
                      +...|+.+-+.++...|... ++.+||+++||++|++.+.+++.....-          .                    
T Consensus      1185 FILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~ 1264 (1634)
T PLN03223       1185 GAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTA 1264 (1634)
T ss_pred             HHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhh
Confidence            45566777777776654222 3468999999999999988887665420          0                    


Q ss_pred             --------------Cc--------------hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955        121 --------------GN--------------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVF  172 (191)
Q Consensus       121 --------------~~--------------~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~if  172 (191)
                                    ..              ...+-+++++|++|++++.+.++.+..++.++.+.++.++++++++++.|
T Consensus      1265 Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AF 1344 (1634)
T PLN03223       1265 LRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGY 1344 (1634)
T ss_pred             hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          00              00123467889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q psy14955        173 ALMGLQDSRGKKS  185 (191)
Q Consensus       173 aiiG~~lF~g~~~  185 (191)
                      |.+|..+||....
T Consensus      1345 AqLG~LLFGt~ve 1357 (1634)
T PLN03223       1345 AFIGHVIFGNASV 1357 (1634)
T ss_pred             HHHHHHHhccCch
Confidence            9999999987654

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=98.67  E-value=3.3e-07  Score=79.34  Aligned_cols=110  Identities=21%  Similarity=0.366  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhcc--------------------Cc--------
Q psy14955         71 IFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDL--------------------GN--------  122 (191)
Q Consensus        71 ~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~--------------------~~--------  122 (191)
                      ++...|...-+.|+...|.     +|++++||++|+++++.++.......                    .+        
T Consensus       219 ~~~l~~~~~ei~~i~~~g~-----~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~  293 (425)
T PF08016_consen  219 LFVLYFLYREIKKIRREGR-----AYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWD  293 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhh-----HHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHH
Confidence            3456677777778877663     89999999999999998877655400                    01        


Q ss_pred             ------hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy14955        123 ------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKS  185 (191)
Q Consensus       123 ------~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~  185 (191)
                            ...+-.+-.+|.+|+++..+.+..+.+++.++.+++...+++++++++.||..|.-+||....
T Consensus       294 ~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~  362 (425)
T PF08016_consen  294 QLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSE  362 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence                  112334566788899999999999999999999999999999999999999999999987654

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599|consensus

Probab=98.58  E-value=6.1e-07  Score=82.64  Aligned_cols=112  Identities=18%  Similarity=0.358  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhccC---------------------c-------
Q psy14955         71 IFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG---------------------N-------  122 (191)
Q Consensus        71 ~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~---------------------~-------  122 (191)
                      ++...|+.+-..++.-++.    .+|++++||++|+.++..+++..+....                     +       
T Consensus       474 l~~~yf~~~e~~~i~~~~~----~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~  549 (798)
T KOG3599|consen  474 LFVLYFAVAEGLKIWIHRL----GRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQW  549 (798)
T ss_pred             HHHHHHHHHHHHHHHHhhH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHH
Confidence            3567888888888875443    3899999999999999999887765110                     0       


Q ss_pred             -------hhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy14955        123 -------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSD  186 (191)
Q Consensus       123 -------~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~  186 (191)
                             ...+-.+-.+|.+|.++..+.++.+-+++.++.++++.+++.++++++.||.+|..+||.+..+
T Consensus       550 ~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~  620 (798)
T KOG3599|consen  550 NIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSD  620 (798)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence                   1124456778999999999999999999999999999999999999999999999999886643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=97.66  E-value=0.0012  Score=61.82  Aligned_cols=84  Identities=11%  Similarity=0.351  Sum_probs=56.0

Q ss_pred             EeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhc----CCC-C--ccchhhhHHHHHHHHHHHHHHHhc------
Q psy14955         21 WVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIM----PGT-P--TIESTEVIFTGIYTFESAVKVMAR------   87 (191)
Q Consensus        21 ~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~----~~~-~--~~~~~~~~~~~iF~~E~~lki~a~------   87 (191)
                      |+..|.++.++         +++.++.++++.+++...+    ... +  .+..+|.++.++|.+|++++....      
T Consensus        52 ~ii~P~~~~~~---------~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~  122 (823)
T PLN03192         52 WIISPMDSRYR---------WWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRT  122 (823)
T ss_pred             eEECCCCcHHH---------HHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCC
Confidence            46666665543         4677888888887776433    221 1  277899999999999999998542      


Q ss_pred             cc-ccc----ccccccccccchhHHHHHHHHH
Q psy14955         88 GF-ILE----SFTYLRDAWNWLDFIVIALAYV  114 (191)
Q Consensus        88 G~-~~~----~~~y~~~~wn~~D~i~i~~~~~  114 (191)
                      |. ..+    ..+|++ .|-++|++.+++..+
T Consensus       123 ~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~  153 (823)
T PLN03192        123 QLLVRDRKKIAVRYLS-TWFLMDVASTIPFQA  153 (823)
T ss_pred             cEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHH
Confidence            10 011    135764 488999998887643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=97.48  E-value=0.0027  Score=58.86  Aligned_cols=114  Identities=16%  Similarity=0.077  Sum_probs=79.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc-----------------c-------
Q psy14955         65 IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID-----------------L-------  120 (191)
Q Consensus        65 ~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~-----------------~-------  120 (191)
                      .++.......-+..|-...++..|..    .|+++.||.+|+......+......                 .       
T Consensus       391 ~e~~~~~~~~~~~~~e~~~~~~~g~~----~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (743)
T TIGR00870       391 LEMLIVTWVDGLRLGEEKLIWLGGIF----EYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTL  466 (743)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchh
Confidence            44444455555666666677776654    7999999999996554433322110                 0       


Q ss_pred             ---CchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955        121 ---GNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVK-NLRDVIILTMFSLSVFALMGLQDSRG  182 (191)
Q Consensus       121 ---~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~-~l~~~~~~l~~~~~ifaiiG~~lF~g  182 (191)
                         ..+...-++..+|++.+.+.++.+--+..++.+.+. .+..++++++++++-||+....+|+.
T Consensus       467 ~~~~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~  532 (743)
T TIGR00870       467 IEEALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQY  532 (743)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               012234455666777777777777778888888888 99999999999999999999999864

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3609|consensus

Probab=95.30  E-value=0.21  Score=46.28  Aligned_cols=112  Identities=18%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             cchhhhHH---HHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc---------cC-----------
Q psy14955         65 IESTEVIF---TGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID---------LG-----------  121 (191)
Q Consensus        65 ~~~~~~~~---~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~---------~~-----------  121 (191)
                      ...+|.+.   ..=++.|=+-.++..|.    ..|+++.||++|+..+.+.+......         ..           
T Consensus       383 p~~vE~li~~wV~G~iw~E~k~lw~~G~----~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~  458 (822)
T KOG3609|consen  383 PQALEILIYLWVMGLIWEEIKELWRVGR----DGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPS  458 (822)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCC
Confidence            55566544   33345555666666664    59999999999999988877666540         00           


Q ss_pred             ---------chhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14955        122 ---------NLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDS  180 (191)
Q Consensus       122 ---------~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF  180 (191)
                               .+...-++-.+|++.+...++.+-=+.-++.+.+..+...+++..++++-|++=--+++
T Consensus       459 ~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy  526 (822)
T KOG3609|consen  459 FDPSLLAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLY  526 (822)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHh
Confidence                     13345567777777777777777777777888888888888888888788876544554

>KOG3614|consensus

Probab=94.37  E-value=0.66  Score=45.29  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=89.3

Q ss_pred             eeCCCC--HHHHHHHHHhcccchHHHH---H--HHHHHHHHHHhcCCCCc---cchhhhHHHHHHHHHHHHHHHhcccc-
Q psy14955         22 VLDPFN--PIRRVAIYILVHPLFSLFI---I--TTILTNCILMIMPGTPT---IESTEVIFTGIYTFESAVKVMARGFI-   90 (191)
Q Consensus        22 ~~~~~~--~~r~~~~~iv~s~~f~~~i---~--~~I~~n~i~~~~~~~~~---~~~~~~~~~~iF~~E~~lki~a~G~~-   90 (191)
                      +++...  +..++.+.+.+.|......   .  +++.+-+..+.++..+.   .+++=++....+++|-+=++...+-. 
T Consensus       771 ~~~r~r~~~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~~Ew~~~~~iftl~~E~vRq~~~se~~~  850 (1381)
T KOG3614|consen  771 VFPRPRPLGKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSMWEWILFAWIFTLFLEEVRQIFISESGL  850 (1381)
T ss_pred             ccCCCCchhHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheeccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCcc
Confidence            555433  3667777888887422221   1  11111222233343333   66666666677777877766543210 


Q ss_pred             cc--ccccccccccchhHHHHHHHHHHHhhccC---chhH-------HHHHHHhhhhhccccchhHHHHHHHHHHHHHHH
Q psy14955         91 LE--SFTYLRDAWNWLDFIVIALAYVTMGIDLG---NLAA-------LRTFRVLRALKTVAIVPGLKTIVGAVIESVKNL  158 (191)
Q Consensus        91 ~~--~~~y~~~~wn~~D~i~i~~~~~~~~~~~~---~~~~-------lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l  158 (191)
                      ..  -.-|+.+.||..|.+++....++.+....   .+..       --++=.+|++-.+...+.+-=-+.-+.+-++.+
T Consensus       851 l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dm  930 (1381)
T KOG3614|consen  851 LPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDM  930 (1381)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHH
Confidence            01  12399999999999999999998877222   1111       122333445555555554443333345677788


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy14955        159 RDVIILTMFSLSVFALMG  176 (191)
Q Consensus       159 ~~~~~~l~~~~~ifaiiG  176 (191)
                      ..+++++++.++.||+.-
T Consensus       931 f~flfllaV~LlsfGVar  948 (1381)
T KOG3614|consen  931 FFFLFLLAVVLLSFGVAR  948 (1381)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            888888888888888753

>KOG1545|consensus

Probab=93.44  E-value=0.26  Score=41.81  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy14955        125 ALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKKSDESHD  190 (191)
Q Consensus       125 ~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~~~~~~~  190 (191)
                      .+|++|+.|++|+.+.++. ..-++-+.+++++-+.=+.++.++++    +|+-||..-++..+.|
T Consensus       325 ILRViRLVRVFRIFKLSRH-SkGLQILGqTl~aSmrElgLLIFFlf----IgviLFsSavYFAEad  385 (507)
T KOG1545|consen  325 ILRVIRLVRVFRIFKLSRH-SKGLQILGQTLRASMRELGLLIFFLF----IGVILFSSAVYFAEAD  385 (507)
T ss_pred             HHHHHHHHHHhhheeeccc-cchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhceeeeeecC
Confidence            5777778888887777776 45666778898888877777666554    6888898777655444

>KOG1420|consensus

Probab=93.13  E-value=0.056  Score=48.35  Aligned_cols=74  Identities=16%  Similarity=0.332  Sum_probs=52.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhH
Q psy14955         65 IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGL  144 (191)
Q Consensus        65 ~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l  144 (191)
                      ...+|..|.++|.+-+.+|.+|   +.++.-|+-..+.++|++.+-++++..-.+- +.-.+|.+   |.+|++....-+
T Consensus       164 tqqidlafnifflvyffirfia---asdklwf~lemys~vdfftippsfvsiyl~r-~wlglrfl---ralrlmtvpdil  236 (1103)
T KOG1420|consen  164 TQQIDLAFNIFFLVYFFIRFIA---ASDKLWFWLEMYSVVDFFTIPPSFVSIYLNR-SWLGLRFL---RALRLMTVPDIL  236 (1103)
T ss_pred             HHHhhhHhhHHHHHHHHHHHhh---cccceeeeeehhhheeeeecCchheEEEecc-chHHHHHH---HHHHhccHHHHH
Confidence            6678999999999999999999   6678889999999999999888887654322 22234444   444444444333


Q ss_pred             H
Q psy14955        145 K  145 (191)
Q Consensus       145 ~  145 (191)
                      +
T Consensus       237 q  237 (1103)
T KOG1420|consen  237 Q  237 (1103)
T ss_pred             H
Confidence            3

>KOG0498|consensus

Probab=92.01  E-value=1.8  Score=40.31  Aligned_cols=82  Identities=17%  Similarity=0.405  Sum_probs=52.4

Q ss_pred             EeeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcC----CC----------C--ccchhhhHHHHHHHHHHHHHH
Q psy14955         21 WVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMP----GT----------P--TIESTEVIFTGIYTFESAVKV   84 (191)
Q Consensus        21 ~~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~----~~----------~--~~~~~~~~~~~iF~~E~~lki   84 (191)
                      ++..|.+++++.         ++.++++..+.+++..-++    ..          .  .+..++.+.-++|+++++++.
T Consensus        68 ~Ii~P~s~~~~~---------W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~F  138 (727)
T KOG0498|consen   68 WILDPYSPFYRV---------WNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNF  138 (727)
T ss_pred             eeECCCChHHHH---------HHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhh
Confidence            355555555443         5556666666655543221    11          1  177899999999999999998


Q ss_pred             Hhc-------cccccc----cccccccccchhHHHHHHH
Q psy14955         85 MAR-------GFILES----FTYLRDAWNWLDFIVIALA  112 (191)
Q Consensus        85 ~a~-------G~~~~~----~~y~~~~wn~~D~i~i~~~  112 (191)
                      ...       ....+|    .+|++ .|=++|++++++.
T Consensus       139 rtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~  176 (727)
T KOG0498|consen  139 RTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF  176 (727)
T ss_pred             eEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh
Confidence            642       111222    35888 8999999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
3rvy_A	285	Crystal Structure Of The Navab Voltage-Gated Sodium		1e-07
4dxw_A	229	Crystal Structure Of Navrh, A Voltage-Gated Sodium		2e-06
4ekw_A	285	Crystal Structure Of The Navab Voltage-Gated Sodium		8e-06
3rw0_A	285	Crystal Structure Of The Navab Voltage-Gated Sodium		8e-06

>pdb|3RVY|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium Channel (Ile217cys, 2.7 A) Length = 285

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 41  LFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESF----TY 96
            F+ FII  I+ N I M +  + T   +  ++T ++  +  + +     IL  +    ++
Sbjct: 31  FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFN-QIVITIFTIEIILRIYVHRISF 89
Query: 97  LRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVK 156
            +D W+  DF V+A++ V           LR  RVLR  + V  VP ++ IV A+I  + 
Sbjct: 90  FKDPWSLFDFFVVAISLVPTS---SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIP 146
Query: 157 NLRDVIILTMFSLSVFALMGLQ 178
            +  VI L      +FA+M  Q
Sbjct: 147 GMLSVIALMTLFFYIFAIMATQ 168

>pdb|4DXW|A Chain A, Crystal Structure Of Navrh, A Voltage-Gated Sodium Channel Length = 229

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 11/143 (7%)
Query: 41  LFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESFT----- 95
           +F   +++ I+ N +L+   G  T E   +    I+  +  + +     IL  F      
Sbjct: 13  IFQFTVVSIIILNAVLI---GATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGEKQK 69
Query: 96  --YLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIE 153
             + +  WN  D +++A++ + +  +  +   LR  R+ R L+ ++++P LK I+ A++E
Sbjct: 70  ADFFKSGWNIFDTVIVAISLIPIP-NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILE 128
Query: 154 SVKNLRDVIILTMFSLSVFALMG 176
           SV+ +  V +L    L ++A MG
Sbjct: 129 SVRRVFFVSLLLFIILYIYATMG 151

>pdb|4EKW|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium Channel (Wild- Type, 3.2 A) Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 41  LFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESF----TY 96
            F+ FII  I+ N I   +  + T   +  ++T ++  +  + +     IL  +    ++
Sbjct: 31  FFTKFIIYLIVLNGITXGLETSKTFXQSFGVYTTLFN-QIVITIFTIEIILRIYVHRISF 89
Query: 97  LRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVK 156
            +D W+  DF V+A++ V           LR  RVLR  + V  VP  + IV A+I  + 
Sbjct: 90  FKDPWSLFDFFVVAISLVPTS---SGFEILRVLRVLRLFRLVTAVPQXRKIVSALISVIP 146
Query: 157 NLRDVIILTMFSLSVFALMGLQ 178
               VI L      +FA+   Q
Sbjct: 147 GXLSVIALXTLFFYIFAIXATQ 168

>pdb|3RW0|A Chain A, Crystal Structure Of The Navab Voltage-Gated Sodium Channel (Met221cys, 2.95 A) Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 41  LFSLFIITTILTNCILMIMPGTPTIESTEVIFTGIYTFESAVKVMARGFILESF----TY 96
            F+ FII  I+ N I   +  + T   +  ++T ++  +  + +     IL  +    ++
Sbjct: 31  FFTKFIIYLIVLNGITXGLETSKTFXQSFGVYTTLFN-QIVITIFTIEIILRIYVHRISF 89
Query: 97  LRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVK 156
            +D W+  DF V+A++ V           LR  RVLR  + V  VP  + IV A+I  + 
Sbjct: 90  FKDPWSLFDFFVVAISLVPTS---SGFEILRVLRVLRLFRLVTAVPQXRKIVSALISVIP 146
Query: 157 NLRDVIILTMFSLSVFALMGLQ 178
               VI L      +FA+   Q
Sbjct: 147 GXLSVIALXTLFFYIFAIXATQ 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	1e-26
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	3e-23
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	2e-09
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	9e-07
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	1e-06

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285

 Score =  101 bits (253), Expect = 1e-26
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 18  DALWVLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIM--------PGTPTIESTE 69
           D   ++   + +      I+    F+ FII  I+ N I M +                  
Sbjct: 8   DKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFN 67

Query: 70  VIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTF 129
            I   I+T E  +++          ++ +D W+  DF V+A++ V           LR  
Sbjct: 68  QIVITIFTIEIILRIYVHRI-----SFFKDPWSLFDFFVVAISLVPTS---SGFEILRVL 119

Query: 130 RVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           RVLR  + V  VP ++ IV A+I  +  +  VI L      +FA+M  Q
Sbjct: 120 RVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQ 168

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229

 Score = 91.2 bits (227), Expect = 3e-23
 Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 29  IRRVAIYILVHPLFSLFIITTILTNCILMIM-------PGTPTIESTEVIFTGIYTFESA 81
           +      +  + +F   +++ I+ N +L+             TI   +   T  +  E  
Sbjct: 1   MTPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEIL 60

Query: 82  VKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIV 141
           ++ +          + +  WN  D +++A++ + +  +  +   LR  R+ R L+ ++++
Sbjct: 61  IRFIGEKQ---KADFFKSGWNIFDTVIVAISLIPIPNN-SSFLVLRLLRIFRVLRLISVI 116

Query: 142 PGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQ 178
           P LK I+ A++ESV+ +  V +L    L ++A MG  
Sbjct: 117 PELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAI 153

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 13/141 (9%)

Query: 41  LFSLFIITTILTNCILMIMPGTPTIES--------TEVIFTGIYTFESAVKVMARGFILE 92
           +++           + +     P +             +  G Y  + A  ++ R   + 
Sbjct: 9   IYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRAGVV 68

Query: 93  SFTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVI 152
                R     +D + + +      +D         +  +  LK +        +   + 
Sbjct: 69  ---RDRTPKIAIDVLAVLVPLAAFLLD--GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLA 123

Query: 153 ESVKNLRDVIILTMFSLSVFA 173
              +NL  V  L    L   A
Sbjct: 124 NEARNLIGVTTLFGVVLFAVA 144

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 36  ILVHPLFSLFIITTILTNCILMIMPGTPTIEST--------EVIFTGIYTFESAVKVMAR 87
           ++ HPL  L +    L + I++++  T  +           ++I   I   + A +    
Sbjct: 4   VMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 63

Query: 88  GFILESFTYLRDAWNWLDFIVIALAYVTMGI--DLGNLAALRTFRVLRALKTVAIVPGLK 145
           G   +   Y++      +   +  A +   I   L  L   R  R+LR L+ + I+    
Sbjct: 64  G---DPAGYVK--KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS 118

Query: 146 TIVGAVIESVKNLRDVIILTMFSLSVF 172
             + A+ ++   +R   +     L+V 
Sbjct: 119 KFLSAIADAADKIRFYHLFGAVMLTVL 145

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 62  TPTIESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGIDLG 121
           T      E +    ++FE  V+  A         +  +  N +D + I   YVT+ +   
Sbjct: 238 TDPFFIVETLCIIWFSFEFLVRFFA---CPSKAGFFTNIMNIIDIVAIIPYYVTIFLTES 294

Query: 122 N------------LAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSL 169
           N            +   R  R+LR  K      GL+ +   +  S++ L  +I      +
Sbjct: 295 NKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGV 354

Query: 170 SVFA 173
            +F+
Sbjct: 355 ILFS 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.95
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.94
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.87
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	99.83
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.68
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	99.64
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.61
4f4l_A	112	ION transport protein; alpha helical membrane prot	96.76
1qg9_A	26	Protein (sodium channel protein, brain II alpha su	96.31
2lcm_A	28	Voltage-dependent N-type calcium channel subunit;	95.48
2a9h_A	155	Voltage-gated potassium channel; potassium channel	95.12
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	90.68
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	87.2
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	83.17

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.95  E-value=2.6e-27  Score=192.97  Aligned_cols=155  Identities=26%  Similarity=0.428  Sum_probs=139.0

Q ss_pred             eeCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccc
Q psy14955         22 VLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILES   93 (191)
Q Consensus        22 ~~~~~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~   93 (191)
                      ..+|.+++|++|+++++|++|+.++.++|++|++.++.++++.        +..+|.+++++|++|+++|+++.|.    
T Consensus        12 ~~p~~~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~~~----   87 (285)
T 3rvy_A           12 LVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRI----   87 (285)
T ss_dssp             -------CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTGG----
T ss_pred             cCCCchHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence            3456666999999999999999999999999999999999884        7789999999999999999999883    


Q ss_pred             cccccccccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955         94 FTYLRDAWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFA  173 (191)
Q Consensus        94 ~~y~~~~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa  173 (191)
                       +|++++||++|++++++++++..   ..++.+|++|++|++|+.++.++++.+..++.++.|++.+++.++++++++||
T Consensus        88 -~y~~~~wn~~Dl~~v~~~~i~~~---~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa  163 (285)
T 3rvy_A           88 -SFFKDPWSLFDFFVVAISLVPTS---SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFA  163 (285)
T ss_dssp             -GGGGCHHHHHHHHHHHHHHSCSS---SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred             -HHHcCChHHhHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999887643   46789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCC
Q psy14955        174 LMGLQDSRGKK  184 (191)
Q Consensus       174 iiG~~lF~g~~  184 (191)
                      ++|+++|+|..
T Consensus       164 ~~g~~~f~~~~  174 (285)
T 3rvy_A          164 IMATQLFGERF  174 (285)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHhCccc
Confidence            99999998865

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.94  E-value=1.1e-27  Score=189.36  Aligned_cols=149  Identities=20%  Similarity=0.402  Sum_probs=124.6

Q ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc-------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccch
Q psy14955         32 VAIYILVHPLFSLFIITTILTNCILMIMPGTPT-------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWL  104 (191)
Q Consensus        32 ~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~-------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~  104 (191)
                      +++++++|++|+.++.++|++|++.++.|+++.       ++.+|.+++.+|++|+++|+++.|   +|.+|++|+||++
T Consensus         4 ~~~~iv~~~~f~~~i~~~I~ln~i~l~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~---~~~~y~~~~wni~   80 (229)
T 4dxw_A            4 FFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGEK---QKADFFKSGWNIF   80 (229)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHHHSTTTCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---chhHHhcCCcHHH
Confidence            578899999999999999999999999999775       778999999999999999999976   5679999999999


Q ss_pred             hHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955        105 DFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRGKK  184 (191)
Q Consensus       105 D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~  184 (191)
                      |++++++++++...+ ...+.+|.+|++|++|+.|+.+++|.+.+++.+|.|++.+++.++++++++||++|+++|+|..
T Consensus        81 D~~~v~~~~i~~~~~-~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~  159 (229)
T 4dxw_A           81 DTVIVAISLIPIPNN-SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDD  159 (229)
T ss_dssp             HHHHHHHTTCC---------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHhhcCcc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999888765422 2345678999999999999999999999999999999999999999999999999999999864

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.87  E-value=2.1e-21  Score=169.77  Aligned_cols=156  Identities=19%  Similarity=0.276  Sum_probs=136.9

Q ss_pred             CCCCHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhcCCCCc--------------------------------
Q psy14955         24 DPFNPIRRVAIYILVHP-------LFSLFIITTILTNCILMIMPGTPT--------------------------------   64 (191)
Q Consensus        24 ~~~~~~r~~~~~iv~s~-------~f~~~i~~~I~~n~i~~~~~~~~~--------------------------------   64 (191)
                      .|++++|++++.++++|       .|+.++.++|++|++.+++++.+.                                
T Consensus       159 ~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (514)
T 2r9r_B          159 LPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFT  238 (514)
T ss_dssp             CCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCC
T ss_pred             CchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhh
Confidence            47899999999999984       799999999999999999988642                                


Q ss_pred             --cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHHHHHHHHHhhc------------cCchhHHHHHH
Q psy14955         65 --IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVIALAYVTMGID------------LGNLAALRTFR  130 (191)
Q Consensus        65 --~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i~~~~~~~~~~------------~~~~~~lr~~R  130 (191)
                        +..+|.+|.++|++|+++|+++.|   ++.+|++++||++|+++++++++.....            ...++.+|++|
T Consensus       239 ~~l~~ie~i~~~iFtiE~ilR~~~~~---~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllR  315 (514)
T 2r9r_B          239 DPFFIVETLCIIWFSFEFLVRFFACP---SKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR  315 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSS---CSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Confidence              446899999999999999999965   5679999999999999999999887652            22467888888


Q ss_pred             HhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955        131 VLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRG  182 (191)
Q Consensus       131 ~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g  182 (191)
                      ++|++|+.++.++++.+..++.++.+++..+++++++.+.+||.++....++
T Consensus       316 vlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~  367 (514)
T 2r9r_B          316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAD  367 (514)
T ss_dssp             GGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecc
Confidence            8999999999999999999999999999999999999999999998876543

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=99.83  E-value=2.9e-21  Score=140.51  Aligned_cols=119  Identities=19%  Similarity=0.262  Sum_probs=105.7

Q ss_pred             HhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHH
Q psy14955         36 ILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFI  107 (191)
Q Consensus        36 iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i  107 (191)
                      +++++.|+..+.++|++|++.+++|++++        +..+|.+++++|++|+++|+++   +++|.+|++  ||++|++
T Consensus         2 ~v~~~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~---~~~~~~y~~--~niiDll   76 (132)
T 1ors_C            2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK---SGDPAGYVK--KTLYEIP   76 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTSTTTTTT--TCGGGTG
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHH--HHHHHHH
Confidence            57899999999999999999999988764        6679999999999999999999   557889999  9999999


Q ss_pred             HHHHHHHHHhhc--cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q psy14955        108 VIALAYVTMGID--LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLR  159 (191)
Q Consensus       108 ~i~~~~~~~~~~--~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~  159 (191)
                      ++++++++...+  ...++.+|++|++|++|+.|+.++++.+.+++.+|.+++.
T Consensus        77 ailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l~  130 (132)
T 1ors_C           77 ALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV  130 (132)
T ss_dssp             GGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            999998877542  2346678999999999999999999999999999999874

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.68  E-value=1.2e-16  Score=133.29  Aligned_cols=140  Identities=13%  Similarity=0.115  Sum_probs=117.0

Q ss_pred             cccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHHHH
Q psy14955         38 VHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFIVI  109 (191)
Q Consensus        38 ~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i~i  109 (191)
                      +|+.|+.++.++|++|++.+++++.++        ++.++.++...|++|+.+|+.+.   .++..|++++||++|++++
T Consensus         6 ~s~~f~~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~~~~~~~~~~~i~Dl~~i   82 (355)
T 3beh_A            6 FLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RAGVVRDRTPKIAIDVLAV   82 (355)
T ss_dssp             -CCSSSSHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CSCSSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cccceeccCcchHHHHHHH
Confidence            356899999999999999999998886        45566677777999999999773   3455689999999999998


Q ss_pred             HHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14955        110 ALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQDSRG  182 (191)
Q Consensus       110 ~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~lF~g  182 (191)
                      ++.+....  ..+.+.+|.+|++|++|+.|..++++.+.+++.++.+++..++.+++++++++|.+++.+.++
T Consensus        83 ~~p~~~~~--~~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~  153 (355)
T 3beh_A           83 LVPLAAFL--LDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERD  153 (355)
T ss_dssp             HHHHHHHH--SCCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH--hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            64444332  234567888899999999999999999999999999999999999999999999999888765

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=99.64  E-value=3.1e-16  Score=115.72  Aligned_cols=125  Identities=18%  Similarity=0.227  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccc
Q psy14955         26 FNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYL   97 (191)
Q Consensus        26 ~~~~r~~~~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~   97 (191)
                      ..++|+++++++++|.|+..+.+++++|++.+..|+.+.        +..+|.++.++|++|+++|+++   +++|.+|+
T Consensus         7 ~~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~---a~~k~~f~   83 (147)
T 2kyh_A            7 LGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK---SGDPAGYV   83 (147)
T ss_dssp             CSHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHH
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH---CCcHHHHH
Confidence            456899999999999999999999999999998876553        6789999999999999999999   56888999


Q ss_pred             cccccchhHHHHHHHHHHHhhc--cCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHH
Q psy14955         98 RDAWNWLDFIVIALAYVTMGID--LGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESV  155 (191)
Q Consensus        98 ~~~wn~~D~i~i~~~~~~~~~~--~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~  155 (191)
                      ++  |++|++++++.......+  ...++.+|++|++|.+|+.+..+..+.+.+++.+-.
T Consensus        84 ~~--~iiDllailP~~~~~~~~~~lr~lRvlRllRv~Rllrl~r~~~~~~~l~~al~~f~  141 (147)
T 2kyh_A           84 KK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAA  141 (147)
T ss_dssp             HH--STTTHHHHCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98  999999998888766541  233445555566666666666666666666655433

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.61  E-value=1.4e-15  Score=119.32  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=104.6

Q ss_pred             HHHhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchh
Q psy14955         34 IYILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLD  105 (191)
Q Consensus        34 ~~iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D  105 (191)
                      ++++++|+||.++.+++++|++.++.|+.+.        +..+|.++..+|++|+++|..+.   .++.+|+++  |++|
T Consensus         2 ~~~~~~~~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~---~~~~~y~~~--~iiD   76 (223)
T 1orq_C            2 GDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GDPAGYVKK--TLYE   76 (223)
T ss_dssp             TTTCCSHHHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT---SCHHHHHHH--HHHH
T ss_pred             hhHHhCchHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc---ccHHHHHHH--hHHH
Confidence            4678999999999999999999888775331        77899999999999999999994   467899998  9999


Q ss_pred             HHHHHHHHHHHhh--c---cCchhHHHHHHHhhhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955        106 FIVIALAYVTMGI--D---LGNLAALRTFRVLRALKTVAIV-PGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQD  179 (191)
Q Consensus       106 ~i~i~~~~~~~~~--~---~~~~~~lr~~R~lR~~rl~~~~-~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~l  179 (191)
                      ++++++..+....  +   ...++.+|++|++|++|+.+.. +..+.+.+++.+  +.+...+.+++..+.++| .+++.
T Consensus        77 llailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~-~~~~~  153 (223)
T 1orq_C           77 IPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVMLTVLYGA-FAIYI  153 (223)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHH
Confidence            9999998876532  1   2346677777777777776633 334555555433  345556666656555555 55677


Q ss_pred             hcCC
Q psy14955        180 SRGK  183 (191)
Q Consensus       180 F~g~  183 (191)
                      .++.
T Consensus       154 ~e~~  157 (223)
T 1orq_C          154 VEYP  157 (223)
T ss_dssp             TTSS
T ss_pred             HHhC
Confidence            7664

>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}

Probab=96.76  E-value=0.00087  Score=46.50  Aligned_cols=31  Identities=16%  Similarity=0.037  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy14955        154 SVKNLRDVIILTMFSLSVFALMGLQDSRGKK  184 (191)
Q Consensus       154 s~~~l~~~~~~l~~~~~ifaiiG~~lF~g~~  184 (191)
                      |.+.+++++.++++++++||++|+++||+..
T Consensus         2 s~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~   32 (112)
T 4f4l_A            2 SHMGVGSVAALLTVVFYIAAVMATNLYGATF   32 (112)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            5677899999999999999999999998875

>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}

Probab=95.48  E-value=0.0021  Score=33.19  Aligned_cols=25  Identities=48%  Similarity=0.769  Sum_probs=20.9

Q ss_pred             CchhHHHHHHHhhhhhccccchhHH
Q psy14955        121 GNLAALRTFRVLRALKTVAIVPGLK  145 (191)
Q Consensus       121 ~~~~~lr~~R~lR~~rl~~~~~~l~  145 (191)
                      +.++.+|.+|++|++|.+..+++++
T Consensus         4 ~~l~~lrtlR~LRpLr~isr~~gmk   28 (28)
T 2lcm_A            4 NTIKSLRVLRVLRPLKTIKRLPKLK   28 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred             chhhHHHHHHHhcchHHHhhcccCC
Confidence            4577899999999999999888753

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=95.12  E-value=0.026  Score=41.25  Aligned_cols=64  Identities=6%  Similarity=-0.179  Sum_probs=14.8

Q ss_pred             cccchhHHHHHHHHHHHhhccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955        100 AWNWLDFIVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQD  179 (191)
Q Consensus       100 ~wn~~D~i~i~~~~~~~~~~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifaiiG~~l  179 (191)
                      .+++.|++.+++          .++.+|++|++|++ +.|+.       .++.+   .....+++.+++..+.+..+++.
T Consensus        14 ~~~~~dli~~lp----------~lr~lRllRi~ril-l~r~~-------~~l~~---~~~~~~~~~~~~~i~~~a~~~~~   72 (155)
T 2a9h_A           14 IEGRGRLIKHMP----------PMLSGLLARLVKLL-LGRHG-------SALHW---RAAGAATVLLVIVLLAGSYLAVL   72 (155)
T ss_dssp             --------------------------------------------------CCHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            456688886554          24455555555555 33331       12222   12222333334444556667777


Q ss_pred             hcCCC
Q psy14955        180 SRGKK  184 (191)
Q Consensus       180 F~g~~  184 (191)
                      .++..
T Consensus        73 ~E~~~   77 (155)
T 2a9h_A           73 AERGA   77 (155)
T ss_dssp             HHTTS
T ss_pred             HhccC
Confidence            77654

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=90.68  E-value=0.4  Score=33.22  Aligned_cols=20  Identities=0%  Similarity=-0.245  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCC
Q psy14955        165 TMFSLSVFALMGLQDSRGKK  184 (191)
Q Consensus       165 l~~~~~ifaiiG~~lF~g~~  184 (191)
                      ......+.+..+++..++..
T Consensus        35 ~~~~~~~~~a~~~~~~E~~~   54 (122)
T 2ih3_C           35 LLVIVLLAGSYLAVLAERGA   54 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhheeeecC
Confidence            33444555666777777754

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=87.20  E-value=1.8  Score=37.49  Aligned_cols=22  Identities=9%  Similarity=0.141  Sum_probs=17.6

Q ss_pred             ccccccchhHHHHHHHHHHHhh
Q psy14955         97 LRDAWNWLDFIVIALAYVTMGI  118 (191)
Q Consensus        97 ~~~~wn~~D~i~i~~~~~~~~~  118 (191)
                      +.+.|..+|.+.++...++.+.
T Consensus       237 ~~~~l~~ie~i~~~iFtiE~il  258 (514)
T 2r9r_B          237 FTDPFFIVETLCIIWFSFEFLV  258 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence            4667888999988888887776

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=83.17  E-value=2.1  Score=32.45  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=33.3

Q ss_pred             chhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14955        122 NLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFA  173 (191)
Q Consensus       122 ~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa  173 (191)
                      .++.+|++|++|..|..+..+.+-..+..-.+++..+..++.++....-+.+
T Consensus       100 ~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g  151 (229)
T 4dxw_A          100 VLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMG  151 (229)
T ss_dssp             CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777766555555545666666666666655544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1orsc_	132	f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer	3e-08

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 36  ILVHPLFSLFIITTILTNCILMIM--------PGTPTIESTEVIFTGIYTFESAVKVMAR 87
           ++ HPL  L +    L + I++++             +   ++I   I   + A +    
Sbjct: 2   VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 61

Query: 88  GFILESFTYLRDAWNWLDFIVIALAYVTMGI--DLGNLAALRTFRVLRALKTVAIVPGLK 145
           G                +   +  A +   I   L  L   R  R+LR L+ + I+    
Sbjct: 62  GDP-----AGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS 116

Query: 146 TIVGAVIESVKNL 158
             + A+ ++   L
Sbjct: 117 KFLSAIADAADKL 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.8

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.80  E-value=8.9e-21  Score=136.16  Aligned_cols=119  Identities=19%  Similarity=0.232  Sum_probs=104.4

Q ss_pred             HhcccchHHHHHHHHHHHHHHHhcCCCCc--------cchhhhHHHHHHHHHHHHHHHhccccccccccccccccchhHH
Q psy14955         36 ILVHPLFSLFIITTILTNCILMIMPGTPT--------IESTEVIFTGIYTFESAVKVMARGFILESFTYLRDAWNWLDFI  107 (191)
Q Consensus        36 iv~s~~f~~~i~~~I~~n~i~~~~~~~~~--------~~~~~~~~~~iF~~E~~lki~a~G~~~~~~~y~~~~wn~~D~i  107 (191)
                      +++||.||..+..++++|++.+++|++++        ++.+|.++..+|++|+++|+++.|   +  ++..+.||++|++
T Consensus         2 ~i~~p~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~---~--~~~~~~~~~iDl~   76 (132)
T d1orsc_           2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSG---D--PAGYVKKTLYEIP   76 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---S--TTTTTTTCGGGTG
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCC---c--cceeCCcchHHHH
Confidence            57899999999999999999999987654        789999999999999999999965   2  4555678999999


Q ss_pred             HHHHHHHHHhh--ccCchhHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Q psy14955        108 VIALAYVTMGI--DLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLR  159 (191)
Q Consensus       108 ~i~~~~~~~~~--~~~~~~~lr~~R~lR~~rl~~~~~~l~~l~~~l~~s~~~l~  159 (191)
                      ++++++.....  ....++.+|.+|++|++|+.+..++++.+.+++.+|.+++.
T Consensus        77 ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~lv  130 (132)
T d1orsc_          77 ALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV  130 (132)
T ss_dssp             GGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99998887655  34468899999999999999999999999999999998863