Psyllid ID: psy14956

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAGGTEPGSPGSPDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSRSAECLFSFKDFSMGKWAYLCLLCGKNRETS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccEcccccEEEEEccccccccccccEEEEEccccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MFCVDILDALTKDffarkgnpieetGDLVAevntrpdeagydpvsstLWRQREEYCARLIQHAWRKhkqcraggtepgspgspdgrdtAVLVesdgfsiknghrvvihsrspsqtsrsaeclfsfkdfsmgKWAYLCLLCGKNRETS
Flexible Loop (DISEMBL)
MFCVDILDALTkdffarkgnpieetgdlvaevntrpdeagydpvsstlWRQREEYCARLIQHAWRKHKqcraggtepgspgspdgRDTAVLVESDgfsiknghrvvihsrspsqtsrsAECLFSFKDFSMGKWAYLCLLcgknrets
Low Complexity Region (SEG)
MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAGGTEPGSPGSPDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSRSAECLFSFKDFSMGKWAYLCLLCGKNRETS
Disordered region (IsUnstruct)
*FCVDILDALTKDFFARKGNPIEETGDLVAEV*******GYDPVSSTLWRQREEYCARLIQHAWRKHK****************************FSIKNGHRVVI************ECLFSFKDFSMGKWAYLCLLCG******
Disordered Region (DISOPRED)
MFCVDILDALTKDFFARKGNPI****************AGYDPVSSTLWRQREEYCARLIQHAWRK******************************FS**********************CLFSFKDFSMGKWAYLCLL*GKN****
Disordered Region (DISEMBL)
MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHA********************DGRDTAVLVESDGFSIKNGHRVVIH**********AECLFSFKDFSMGKWAYLCLLCGKNRETS
Disordered Region (DISPRO)
MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRA*************RDTAVLVESDGFSIKNGHRVVIHSR*****SRSAECLFSFKDFSMGKWAYLCLLCGK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAGGTEPGSPGSPDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSRSAECLFSFKDFSMGKWAYLCLLCGKNRETS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
P35500	2131	Sodium channel protein pa	yes	N/A	0.496	0.034	0.797	7e-30
Q28371	1834	Sodium channel protein ty	yes	N/A	0.469	0.037	0.375	7e-06
Q9ER60	1841	Sodium channel protein ty	yes	N/A	0.469	0.037	0.361	2e-05
P15390	1840	Sodium channel protein ty	yes	N/A	0.469	0.037	0.361	2e-05
Q2XVR4	1715	Sodium channel protein ty	N/A	N/A	0.414	0.035	0.385	3e-05
P35499	1836	Sodium channel protein ty	yes	N/A	0.469	0.037	0.361	3e-05
Q2XVR6	1719	Sodium channel protein ty	N/A	N/A	0.414	0.035	0.371	0.0001
O08562	1984	Sodium channel protein ty	no	N/A	0.421	0.031	0.338	0.0002
P35498	2009	Sodium channel protein ty	no	N/A	0.414	0.030	0.357	0.0002
P04774	2009	Sodium channel protein ty	no	N/A	0.414	0.030	0.357	0.0002

>sp|P35500|SCNA_DROME Sodium channel protein para OS=Drosophila melanogaster GN=para PE=2 SV=3

 Score =  129 bits (324), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            M+CVDILDALTKDFFARKGNPIEETG+ + E+  RPD  GY+PVSSTLWRQREEYCARLI
Sbjct: 1936 MYCVDILDALTKDFFARKGNPIEETGE-IGEIAARPDTEGYEPVSSTLWRQREEYCARLI 1994

Query: 61   QHAWRKHKQCRAGG 74
            QHAWRKHK    GG
Sbjct: 1995 QHAWRKHKARGEGG 2008

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)

>sp|Q28371|SCN4A_HORSE Sodium channel protein type 4 subunit alpha OS=Equus caballus GN=SCN4A PE=1 SV=1

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 3    CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            C+DIL ALTK+     G  + ++ET +    +   P +  Y+P+++TL R++EE CA  I
Sbjct: 1673 CLDILFALTKEVLGDSGEMDALKETME-EKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1731

Query: 61   QHAWRKHKQCRA 72
            Q A+R+H   R+
Sbjct: 1732 QRAYRRHLLQRS 1743

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Equus caballus (taxid: 9796)

>sp|Q9ER60|SCN4A_MOUSE Sodium channel protein type 4 subunit alpha OS=Mus musculus GN=Scn4a PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 3    CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            C+DIL ALTK+     G  + +++T +    +   P +  Y+P+++TL R++EE CA  I
Sbjct: 1670 CLDILFALTKEVLGDSGEMDALKQTME-EKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1728

Query: 61   QHAWRKHKQCRA 72
            Q A+R+H   R+
Sbjct: 1729 QRAYRRHLLQRS 1740

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Mus musculus (taxid: 10090)

>sp|P15390|SCN4A_RAT Sodium channel protein type 4 subunit alpha OS=Rattus norvegicus GN=Scn4a PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 3    CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            C+DIL ALTK+     G  + +++T +    +   P +  Y+P+++TL R++EE CA  I
Sbjct: 1669 CLDILFALTKEVLGDSGEMDALKQTME-EKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1727

Query: 61   QHAWRKHKQCRA 72
            Q A+R+H   R+
Sbjct: 1728 QRAYRRHLLQRS 1739

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Rattus norvegicus (taxid: 10116)

>sp|Q2XVR4|SC4AB_TETNG Sodium channel protein type 4 subunit alpha B OS=Tetraodon nigroviridis GN=scn4ab PE=3 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 9/70 (12%)

Query: 3    CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
            C+DIL ALT +         +E   L A +  +     P +  Y+P+SSTL R+ EE  A
Sbjct: 1560 CMDILLALTAEVLGDS----DEMDTLKATMEEKFMANNPSKVSYEPISSTLRRKEEEVAA 1615

Query: 58   RLIQHAWRKH 67
            R+IQ A+RK+
Sbjct: 1616 RVIQRAYRKY 1625

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Tetraodon nigroviridis (taxid: 99883)

>sp|P35499|SCN4A_HUMAN Sodium channel protein type 4 subunit alpha OS=Homo sapiens GN=SCN4A PE=1 SV=4

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 3    CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            C+DIL ALTK+     G  + +++T +    +   P +  Y+P+++TL R+ EE CA  I
Sbjct: 1676 CLDILFALTKEVLGDSGEMDALKQTME-EKFMAANPSKVSYEPITTTLKRKHEEVCAIKI 1734

Query: 61   QHAWRKHKQCRA 72
            Q A+R+H   R+
Sbjct: 1735 QRAYRRHLLQRS 1746

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Homo sapiens (taxid: 9606)

>sp|Q2XVR6|SC4AB_TAKRU Sodium channel protein type 4 subunit alpha B OS=Takifugu rubripes GN=scn4ab PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 9/70 (12%)

Query: 3    CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
            C+DIL ALT +         +E   L A +  +     P +  Y+P+SSTL R+ EE  A
Sbjct: 1564 CMDILLALTAEVLGDS----DEMDTLKATMEEKFMANNPSKVSYEPISSTLLRKEEEVAA 1619

Query: 58   RLIQHAWRKH 67
             +IQ A+RK+
Sbjct: 1620 TVIQRAYRKY 1629

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. This sodium channel may be present in both denervated and innervated skeletal muscle.

Takifugu rubripes (taxid: 31033)

>sp|O08562|SCN9A_RAT Sodium channel protein type 9 subunit alpha OS=Rattus norvegicus GN=Scn9a PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 9/71 (12%)

Query: 3    CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
            C+DIL A TK      G    E   L +++  R     P +  Y+P+++TL R++EE  A
Sbjct: 1836 CLDILFAFTKRVLGEGG----EMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEEVSA 1891

Query: 58   RLIQHAWRKHK 68
             +IQ A+R+++
Sbjct: 1892 TIIQRAYRRYR 1902

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-sensitive Na(+) channel isoform. Plays a role in pain mechanisms, especially in the development of inflammatory pain.

Rattus norvegicus (taxid: 10116)

>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens GN=SCN1A PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 3    CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
            C+DIL A TK      G    E   L  ++  R     P +  Y P+++TL R++EE  A
Sbjct: 1864 CLDILFAFTKRVLGESG----EMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSA 1919

Query: 58   RLIQHAWRKH 67
             +IQ A+R+H
Sbjct: 1920 VIIQRAYRRH 1929

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus GN=Scn1a PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 3    CVDILDALTKDFFARKGNPIEETGDLVAEVNTR-----PDEAGYDPVSSTLWRQREEYCA 57
            C+DIL A TK      G    E   L  ++  R     P +  Y P+++TL R++EE  A
Sbjct: 1864 CLDILFAFTKRVLGESG----EMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSA 1919

Query: 58   RLIQHAWRKH 67
             +IQ A+R+H
Sbjct: 1920 VIIQRAYRRH 1929

Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
340718624	2044	PREDICTED: LOW QUALITY PROTEIN: sodium c	0.809	0.058	0.75	4e-45
350409729	2044	PREDICTED: sodium channel protein para-l	0.809	0.058	0.75	5e-45
259906449	2044	sodium channel protein paralytic [Apis m	0.809	0.058	0.75	5e-45
380028083	2078	PREDICTED: sodium channel protein para-l	0.809	0.057	0.75	7e-45
322795001	1892	hypothetical protein SINV_07049 [Solenop	0.809	0.062	0.76	1e-44
383858786	2023	PREDICTED: sodium channel protein para-l	0.809	0.058	0.741	2e-44
307210096	2055	Sodium channel protein para [Harpegnatho	0.775	0.055	0.788	2e-44
383858784	2036	PREDICTED: sodium channel protein para-l	0.809	0.058	0.741	2e-44
383858788	2044	PREDICTED: sodium channel protein para-l	0.809	0.058	0.741	2e-44
383858782	2050	PREDICTED: sodium channel protein para-l	0.809	0.058	0.741	2e-44

>gi|340718624|ref|XP_003397764.1| PREDICTED: LOW QUALITY PROTEIN: sodium channel protein para-like [Bombus terrestris]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 101/124 (81%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEE+ ++  EV TRP EAGY+PVSSTLWRQREEYCARLI
Sbjct: 1923 MFCVDILDALTKDFFARKGNPIEESAEI--EVQTRPGEAGYEPVSSTLWRQREEYCARLI 1980

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1981 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2040

Query: 118  SAEC 121
            +A+ 
Sbjct: 2041 TADV 2044

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409729|ref|XP_003488828.1| PREDICTED: sodium channel protein para-like [Bombus impatiens]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 101/124 (81%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEE+ ++  EV TRP EAGY+PVSSTLWRQREEYCARLI
Sbjct: 1923 MFCVDILDALTKDFFARKGNPIEESAEI--EVQTRPGEAGYEPVSSTLWRQREEYCARLI 1980

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1981 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2040

Query: 118  SAEC 121
            +A+ 
Sbjct: 2041 TADV 2044

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|259906449|ref|NP_001159377.1| sodium channel protein paralytic [Apis mellifera] gi|258674487|gb|ACV87000.1| paralytic [Apis mellifera]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 100/124 (80%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEET ++  EV TRP E GY+PVSSTLWRQREEYCARLI
Sbjct: 1923 MFCVDILDALTKDFFARKGNPIEETAEI--EVQTRPGETGYEPVSSTLWRQREEYCARLI 1980

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1981 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2040

Query: 118  SAEC 121
            +A+ 
Sbjct: 2041 TADV 2044

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028083|ref|XP_003697741.1| PREDICTED: sodium channel protein para-like [Apis florea]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 100/124 (80%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEET ++  EV TRP E GY+PVSSTLWRQREEYCARLI
Sbjct: 1957 MFCVDILDALTKDFFARKGNPIEETAEI--EVQTRPGETGYEPVSSTLWRQREEYCARLI 2014

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 2015 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2074

Query: 118  SAEC 121
            +A+ 
Sbjct: 2075 TADV 2078

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795001|gb|EFZ17857.1| hypothetical protein SINV_07049 [Solenopsis invicta]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 100/125 (80%), Gaps = 6/125 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEETGDL  EV  RPDEAGY+PVSSTLWRQREEYCARLI
Sbjct: 1770 MFCVDILDALTKDFFARKGNPIEETGDL-GEVQARPDEAGYEPVSSTLWRQREEYCARLI 1828

Query: 61   QHAWRKHKQCRAGGTEPGSPGSPD----GRDTAVLVESDGFSIKNGHRVVIHSRSPSQTS 116
            Q+AWRKHKQ R GG    S   PD     R T VLVESDG+  KNGHRVVIHSRS S TS
Sbjct: 1829 QNAWRKHKQQRLGGPSEES-DDPDIDLCVRQTQVLVESDGYVTKNGHRVVIHSRSMSITS 1887

Query: 117  RSAEC 121
            R+A+ 
Sbjct: 1888 RTADV 1892

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858786|ref|XP_003704880.1| PREDICTED: sodium channel protein para-like isoform 3 [Megachile rotundata]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 99/124 (79%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEET ++  EV  RP E GY+PVSSTLWRQREEYCARLI
Sbjct: 1902 MFCVDILDALTKDFFARKGNPIEETAEI--EVQARPGETGYEPVSSTLWRQREEYCARLI 1959

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1960 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2019

Query: 118  SAEC 121
            +A+ 
Sbjct: 2020 TADV 2023

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210096|gb|EFN86793.1| Sodium channel protein para [Harpegnathos saltator]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 97/118 (82%), Gaps = 4/118 (3%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEETGDL  EV  RPDE GY+PVSSTLWRQREEYCARLI
Sbjct: 1938 MFCVDILDALTKDFFARKGNPIEETGDL-GEVQARPDEIGYEPVSSTLWRQREEYCARLI 1996

Query: 61   QHAWRKHKQCRAGG--TEPGSPGS-PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQT 115
            Q+AWRKHKQ R GG   E   P + P  R TAVLVESDG+  KNGHRVVIHSRSPS T
Sbjct: 1997 QNAWRKHKQQRLGGPSEESDDPDTDPRVRQTAVLVESDGYVTKNGHRVVIHSRSPSVT 2054

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858784|ref|XP_003704879.1| PREDICTED: sodium channel protein para-like isoform 2 [Megachile rotundata]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 99/124 (79%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEET ++  EV  RP E GY+PVSSTLWRQREEYCARLI
Sbjct: 1915 MFCVDILDALTKDFFARKGNPIEETAEI--EVQARPGETGYEPVSSTLWRQREEYCARLI 1972

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1973 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2032

Query: 118  SAEC 121
            +A+ 
Sbjct: 2033 TADV 2036

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858788|ref|XP_003704881.1| PREDICTED: sodium channel protein para-like isoform 4 [Megachile rotundata]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 99/124 (79%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEET ++  EV  RP E GY+PVSSTLWRQREEYCARLI
Sbjct: 1923 MFCVDILDALTKDFFARKGNPIEETAEI--EVQARPGETGYEPVSSTLWRQREEYCARLI 1980

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1981 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2040

Query: 118  SAEC 121
            +A+ 
Sbjct: 2041 TADV 2044

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858782|ref|XP_003704878.1| PREDICTED: sodium channel protein para-like isoform 1 [Megachile rotundata]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 99/124 (79%), Gaps = 5/124 (4%)

Query: 1    MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
            MFCVDILDALTKDFFARKGNPIEET ++  EV  RP E GY+PVSSTLWRQREEYCARLI
Sbjct: 1929 MFCVDILDALTKDFFARKGNPIEETAEI--EVQARPGETGYEPVSSTLWRQREEYCARLI 1986

Query: 61   QHAWRKHKQCRAGGTEPGSPGS---PDGRDTAVLVESDGFSIKNGHRVVIHSRSPSQTSR 117
            Q+AWRKHKQ R GG    S  +   P  R TAVLVESDGF  KNGHRVVIHSRSPS TSR
Sbjct: 1987 QNAWRKHKQQRLGGPSEESDDADTDPRVRQTAVLVESDGFVTKNGHRVVIHSRSPSVTSR 2046

Query: 118  SAEC 121
            +A+ 
Sbjct: 2047 TADV 2050

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
FB|FBgn0264255	2131	para "paralytic" [Drosophila m	0.646	0.044	0.666	2.7e-29
UNIPROTKB|Q8AV15	487	Q8AV15 "Uncharacterized protei	0.435	0.131	0.373	4.8e-06
UNIPROTKB|F1RSK2	1832	SCN4A "Uncharacterized protein	0.435	0.034	0.388	1.5e-05
UNIPROTKB|E1B9X0	1834	LOC517426 "Uncharacterized pro	0.435	0.034	0.388	1.5e-05
UNIPROTKB|E2RR09	1837	SCN4A "Uncharacterized protein	0.435	0.034	0.388	1.5e-05
UNIPROTKB|G3MYM1	1964	SCN10A "Uncharacterized protei	0.639	0.047	0.323	1.6e-05
UNIPROTKB|E1C6G0	1817	E1C6G0 "Uncharacterized protei	0.435	0.035	0.373	2.4e-05
RGD|3636	1840	Scn4a "sodium channel, voltage	0.435	0.034	0.373	2.4e-05
UNIPROTKB|P15390	1840	Scn4a "Sodium channel protein	0.435	0.034	0.373	2.4e-05
MGI|MGI:98250	1841	Scn4a "sodium channel, voltage	0.435	0.034	0.373	2.4e-05

FB|FBgn0264255 para "paralytic" [Drosophila melanogaster (taxid:7227)]

 Score = 341 (125.1 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/102 (66%), Positives = 75/102 (73%)

Query:     1 MFCVDILDALTKDFFARKGNPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             M+CVDILDALTKDFFARKGNPIEETG+ + E+  RPD  GY+PVSSTLWRQREEYCARLI
Sbjct:  1936 MYCVDILDALTKDFFARKGNPIEETGE-IGEIAARPDTEGYEPVSSTLWRQREEYCARLI 1994

Query:    61 QHAWRKHKQCRAGG------TEPGSPGSPDGRDTAVLVESDG 96
             QHAWRKHK    GG      T+ G  G PD  D A    +DG
Sbjct:  1995 QHAWRKHKARGEGGGSFEPDTDHGDGGDPDAGDPAPDEATDG 2036

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0009612 "response to mechanical stimulus" evidence=IGI;IMP

GO:0006814 "sodium ion transport" evidence=NAS;IDA

GO:0005248 "voltage-gated sodium channel activity" evidence=ISS;NAS;IDA

GO:0005887 "integral to plasma membrane" evidence=NAS;IDA

GO:0046684 "response to pyrethroid" evidence=NAS;IMP

GO:0046680 "response to DDT" evidence=IDA;NAS;IMP

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=NAS;IMP

GO:0001518 "voltage-gated sodium channel complex" evidence=ISS

GO:0005886 "plasma membrane" evidence=NAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0001666 "response to hypoxia" evidence=IDA

UNIPROTKB|Q8AV15 Q8AV15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:     3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  ++   D + E  +   P +  Y+P+++TL R+ EE CA  I
Sbjct:   337 CLDILFALTKEVLGDSGE-MDALKDTMEEKFMAANPSKVSYEPITTTLKRKHEEVCATKI 395

Query:    61 QHAWRKH 67
             Q A+R++
Sbjct:   396 QRAFRRY 402

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

UNIPROTKB|F1RSK2 SCN4A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 117 (46.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query:     3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  + ++ET +    +   P +  Y+P+++TL R+ EE CA  I
Sbjct:  1669 CLDILFALTKEVLGDSGEMDALKETME-EKFMAANPSKVSYEPITTTLKRKHEEVCAIKI 1727

Query:    61 QHAWRKH 67
             Q A+R+H
Sbjct:  1728 QRAYRRH 1734

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

UNIPROTKB|E1B9X0 LOC517426 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query:     3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  + ++ET +    +   P +  Y+P+++TL R+ EE CA  I
Sbjct:  1673 CLDILFALTKEVLGDSGEMDALKETME-EKFMAANPSKVSYEPITTTLKRKHEEVCAIKI 1731

Query:    61 QHAWRKH 67
             Q A+R+H
Sbjct:  1732 QRAYRRH 1738

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

UNIPROTKB|E2RR09 SCN4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query:     3 CVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  + ++ET +    +   P +  Y+P+++TL R+ EE CA  I
Sbjct:  1676 CLDILFALTKEVLGDSGEMDALKETME-EKFMAANPSKVSYEPITTTLKRKHEEVCAIKI 1734

Query:    61 QHAWRKH 67
             Q A+R+H
Sbjct:  1735 QRAYRRH 1741

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

UNIPROTKB|G3MYM1 SCN10A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 32/99 (32%), Positives = 53/99 (53%)

Query:     3 CVDILDALTKDFFARKGNPIEETGDLVAE-VNTRPDEAGYDPVSSTL-WRQREEYCARLI 60
             C+DIL A TK      G       ++  + + T   +A Y+P+++TL W+Q E+  A +I
Sbjct:  1807 CLDILFAFTKKVLGESGELDSLKANMEEKFMATNLSKASYEPIATTLRWKQ-EDISATVI 1865

Query:    61 QHAWRKHKQCRAGGTEPGSPGSPDGRDTAVLVESDGFSI 99
             Q A+R + Q R+  T     G+P   + A L E +GF++
Sbjct:  1866 QKAYRSYMQHRSR-TAASPAGAPRAEEEAALPE-EGFAV 1902

GO:0086069 "bundle of His cell to Purkinje myocyte communication" evidence=IEA

GO:0086067 "AV node cell to bundle of His cell communication" evidence=IEA

GO:0060371 "regulation of atrial cardiac muscle cell membrane depolarization" evidence=IEA

GO:0055117 "regulation of cardiac muscle contraction" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

GO:0002027 "regulation of heart rate" evidence=IEA

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

UNIPROTKB|E1C6G0 E1C6G0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:     3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  ++   D + E  +   P +  Y+P+++TL R+ EE CA  I
Sbjct:  1675 CLDILFALTKEVLGDSGE-MDALKDTMEEKFMAANPSKVSYEPITTTLKRKHEEVCATKI 1733

Query:    61 QHAWRKH 67
             Q A+R++
Sbjct:  1734 QRAFRRY 1740

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA

RGD|3636 Scn4a "sodium channel, voltage-gated, type IV, alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:     3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  ++     + E  +   P +  Y+P+++TL R++EE CA  I
Sbjct:  1669 CLDILFALTKEVLGDSGE-MDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1727

Query:    61 QHAWRKH 67
             Q A+R+H
Sbjct:  1728 QRAYRRH 1734

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IEA;ISO;TAS

GO:0006814 "sodium ion transport" evidence=ISO;TAS

GO:0034765 "regulation of ion transmembrane transport" evidence=ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

UNIPROTKB|P15390 Scn4a "Sodium channel protein type 4 subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:     3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  ++     + E  +   P +  Y+P+++TL R++EE CA  I
Sbjct:  1669 CLDILFALTKEVLGDSGE-MDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1727

Query:    61 QHAWRKH 67
             Q A+R+H
Sbjct:  1728 QRAYRRH 1734

GO:0001518 "voltage-gated sodium channel complex" evidence=IEA

MGI|MGI:98250 Scn4a "sodium channel, voltage-gated, type IV, alpha" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query:     3 CVDILDALTKDFFARKGNPIEETGDLVAE--VNTRPDEAGYDPVSSTLWRQREEYCARLI 60
             C+DIL ALTK+     G  ++     + E  +   P +  Y+P+++TL R++EE CA  I
Sbjct:  1670 CLDILFALTKEVLGDSGE-MDALKQTMEEKFMAANPSKVSYEPITTTLKRKQEEVCAIKI 1728

Query:    61 QHAWRKH 67
             Q A+R+H
Sbjct:  1729 QRAYRRH 1735

GO:0001518 "voltage-gated sodium channel complex" evidence=IC

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005248 "voltage-gated sodium channel activity" evidence=IDA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005272 "sodium channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IDA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;IDA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35500	SCNA_DROME	No assigned EC number	0.7972	0.4965	0.0342	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG2301|consensus	1592		99.05
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.21
smart00015	26	IQ Short calmodulin-binding motif containing conse	95.4
PF15157	97	IQ-like: IQ-like	93.0
KOG0162|consensus	1106		87.35
KOG0377|consensus	631		84.35
PF08763	35	Ca_chan_IQ: Voltage gated calcium channel IQ domai	83.88

>KOG2301|consensus

Probab=99.05  E-value=1.2e-10  Score=116.76  Aligned_cols=73  Identities=30%  Similarity=0.449  Sum_probs=65.8

Q ss_pred             CchHHHHHHHHhHHhcCCC--CccchhhhhhHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14956          1 MFCVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAGG   74 (147)
Q Consensus         1 IHClDIL~ALtKrVLG~~~--~~l~~~~e~~~f~~~~P~k~~yepIsTTl~rkrEe~AA~vIQRA~R~~~l~r~~~   74 (147)
                      |||.|||+||++++||.++  +.++..+++ +++.++|+++.|+||.+|+.+++++.+|.+||+|||.|++++...
T Consensus      1473 V~f~d~L~aL~~r~l~i~~~~~~~~~~q~e-~~~~~~~~~i~~~~i~~~l~~l~~~~~a~~i~~~y~~~~~~~~~~ 1547 (1592)
T KOG2301|consen 1473 VHCLDILFALTKRVLGIKKELDKVRELQEE-EFLASIPSKISYEPITTTLKRLQEPLSATIIQRAYRGYLLRDSDK 1547 (1592)
T ss_pred             eehhhHHHHHHHHhhcccccccHHHHHHHH-HHHhhcchhhccchHHHHHHhhccchhhHHHHHHHHHHHHHHHHh
Confidence            7999999999999999877  445666677 899999999999999999999999999999999999999877643

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.21  E-value=0.0061  Score=32.87  Aligned_cols=18  Identities=28%  Similarity=0.348  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy14956         55 YCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        55 ~AA~vIQRA~R~~~l~r~   72 (147)
                      .||.+||+.||.|+.++.
T Consensus         2 ~aai~iQ~~~R~~~~Rk~   19 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKR   19 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            589999999999998764

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=95.40  E-value=0.015  Score=32.64  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q psy14956         53 EEYCARLIQHAWRKHKQCRAG   73 (147)
Q Consensus        53 Ee~AA~vIQRA~R~~~l~r~~   73 (147)
                      ++.||.+||..||.|+.++..
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            567999999999999988753

Calmodulin-binding motif.

>PF15157 IQ-like: IQ-like

Probab=93.00  E-value=0.072  Score=39.55  Aligned_cols=18  Identities=33%  Similarity=0.527  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHhhcC
Q psy14956         56 CARLIQHAWRKHKQCRAG   73 (147)
Q Consensus        56 AA~vIQRA~R~~~l~r~~   73 (147)
                      -++|||||||.|+.+...
T Consensus        49 kvkiiqrawre~lq~qd~   66 (97)
T PF15157_consen   49 KVKIIQRAWREYLQRQDP   66 (97)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            367999999999987653

>KOG0162|consensus

Probab=87.35  E-value=0.6  Score=46.02  Aligned_cols=19  Identities=42%  Similarity=0.599  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q psy14956         54 EYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        54 e~AA~vIQRA~R~~~l~r~   72 (147)
                      +--|++||||||+|+.||.
T Consensus       696 d~~A~~IQkAWRrfv~rrk  714 (1106)
T KOG0162|consen  696 DGMARRIQKAWRRFVARRK  714 (1106)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            4468899999999998776

>KOG0377|consensus

Probab=84.35  E-value=1.1  Score=41.97  Aligned_cols=21  Identities=29%  Similarity=0.224  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q psy14956         52 REEYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        52 rEe~AA~vIQRA~R~~~l~r~   72 (147)
                      +...||.+||++||+|..|.+
T Consensus        15 raikaAilIQkWYRr~~ARle   35 (631)
T KOG0377|consen   15 RAIKAAILIQKWYRRYEARLE   35 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999986554

>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers

Probab=83.88  E-value=1.3  Score=27.57  Aligned_cols=19  Identities=32%  Similarity=0.467  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q psy14956         54 EYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        54 e~AA~vIQRA~R~~~l~r~   72 (147)
                      .+||-+||..||+|+.++.
T Consensus         9 ~YAt~lI~dyfr~~K~rk~   27 (35)
T PF08763_consen    9 FYATLLIQDYFRQFKKRKE   27 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5899999999999998765

Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
4dck_A	168	Crystal Structure Of The C-Terminus Of Voltage-Gate		4e-05

>pdb|4DCK|A Chain A, Crystal Structure Of The C-Terminus Of Voltage-Gated Sodium Channel In Complex With Fgf13 And Cam Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 3   CVDILDALTKDFFARKGN----PIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCAR 58
           C+DIL A TK      G      I+     +A     P +  Y+P+++TL R+ EE  A 
Sbjct: 78  CMDILFAFTKRVLGESGEMDALKIQMEEKFMA---ANPSKISYEPITTTLRRKHEEVSAM 134
Query: 59  LIQHAWRKHKQCRA 72
           +IQ A+R+H   R+
Sbjct: 135 VIQRAFRRHLLQRS 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	3e-19

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Length = 168

 Score = 78.2 bits (192), Expect = 3e-19
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MFCVDILDALTKDFFARKGNPIEETGDLVAEV-NTRPDEAGYDPVSSTLWRQREEYCARL 59
           + C+DIL A TK      G        +  +     P +  Y+P+++TL R+ EE  A +
Sbjct: 76  IHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSAMV 135

Query: 60  IQHAWRKHKQCR 71
           IQ A+R+H   R
Sbjct: 136 IQRAFRRHLLQR 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	99.91
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	99.03
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	99.0
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	95.23
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	92.77
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	85.69
3dvk_B	23	Voltage-dependent R-type calcium channel subunit;	84.68
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	84.15
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	83.95
3dve_B	23	Voltage-dependent N-type calcium channel subunit;	80.51
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	80.17

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=99.91  E-value=3e-25  Score=175.42  Aligned_cols=72  Identities=32%  Similarity=0.541  Sum_probs=68.1

Q ss_pred             CchHHHHHHHHhHHhcCCC--CccchhhhhhHhhhcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy14956          1 MFCVDILDALTKDFFARKG--NPIEETGDLVAEVNTRPDEAGYDPVSSTLWRQREEYCARLIQHAWRKHKQCRAG   73 (147)
Q Consensus         1 IHClDIL~ALtKrVLG~~~--~~l~~~~e~~~f~~~~P~k~~yepIsTTl~rkrEe~AA~vIQRA~R~~~l~r~~   73 (147)
                      |||+|||+||||+|||+++  +.++++|++ +|+++||++.+|+||+||++|++|++||++||||||+|++++..
T Consensus        76 Vhf~dvL~ALtk~vlg~~~~~~~~~~~~e~-~~~~~~P~~~~~~pi~tt~~~~~e~~aA~~IQra~R~~~~r~~~  149 (168)
T 4dck_A           76 IHCMDILFAFTKRVLGESGEMDALKIQMEE-KFMAANPSKISYEPITTTLRRKHEEVSAMVIQRAFRRHLLQRSL  149 (168)
T ss_dssp             EEHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHCCCGGGCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeHHHHHHHHHHHHhCCcccHHHHHHHHHH-HHHHhCCCcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7999999999999999876  688999999 99999999999999999999999999999999999999988763

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=99.03  E-value=5.2e-11  Score=69.09  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q psy14956         49 WRQREEYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        49 ~rkrEe~AA~vIQRA~R~~~l~r~   72 (147)
                      +|++||+||+|||||||+|++++.
T Consensus         1 ~rk~Ee~aA~vIQrA~R~yl~~~~   24 (27)
T 2kxw_B            1 KRKQEEVSAIVIQRAYRRYLLKQK   24 (27)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhh
Confidence            368999999999999999999765

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=99.00  E-value=1.1e-10  Score=69.64  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14956         50 RQREEYCARLIQHAWRKHKQCRAGG   74 (147)
Q Consensus        50 rkrEe~AA~vIQRA~R~~~l~r~~~   74 (147)
                      |+|||+||+|||||||+|++++...
T Consensus         2 rk~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            2 PGSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6799999999999999999987643

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.022  Score=34.74  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q psy14956         51 QREEYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        51 krEe~AA~vIQRA~R~~~l~r~   72 (147)
                      .+++.||.+||..||.|+.++.
T Consensus        25 ~~~~~aai~IQ~~~Rg~~~Rk~   46 (48)
T 1n2d_C           25 EMKVNCATLLQAAYRGHSIRAN   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHh
Confidence            3466799999999999998763

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=92.77  E-value=0.092  Score=33.15  Aligned_cols=18  Identities=17%  Similarity=0.008  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy14956         54 EYCARLIQHAWRKHKQCR   71 (147)
Q Consensus        54 e~AA~vIQRA~R~~~l~r   71 (147)
                      +.||.+||..||.|+.++
T Consensus         5 ~~aai~IQ~~~Rg~~~Rk   22 (58)
T 2ix7_C            5 RAACIRIQKTIRGWLLRK   22 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555666666555443

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=85.69  E-value=0.89  Score=29.17  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q psy14956         51 QREEYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        51 krEe~AA~vIQRA~R~~~l~r~   72 (147)
                      ..+..|+.+||+.+|.|+..+.
T Consensus        27 ~~~~~A~~iIQrn~R~~~~lr~   48 (63)
T 2bl0_A           27 REKSVSARIIQDNIRAYLEFKN   48 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            3345688899999999987654

>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B

Probab=84.68  E-value=0.68  Score=25.60  Aligned_cols=17  Identities=24%  Similarity=0.341  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy14956         54 EYCARLIQHAWRKHKQC   70 (147)
Q Consensus        54 e~AA~vIQRA~R~~~l~   70 (147)
                      .+||-+||.-||+++.+
T Consensus         6 iYA~llI~d~~r~~k~r   22 (23)
T 3dvk_B            6 IYAAMMIMDYYKQSKVK   22 (26)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            58999999999999865

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=84.15  E-value=1.2  Score=27.86  Aligned_cols=19  Identities=16%  Similarity=-0.053  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q psy14956         54 EYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        54 e~AA~vIQRA~R~~~l~r~   72 (147)
                      -.||.+||..||.|+.++.
T Consensus        28 r~aai~IQ~~~Rg~~aR~~   46 (58)
T 2ix7_C           28 QRAAITVQRYVRGYQARCY   46 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3589999999999987654

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=83.95  E-value=1.2  Score=28.56  Aligned_cols=21  Identities=24%  Similarity=0.178  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q psy14956         52 REEYCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        52 rEe~AA~vIQRA~R~~~l~r~   72 (147)
                      .+..|+.+||+.+|.|+..+.
T Consensus        30 ~~~~A~~iIQrn~R~~~~l~~   50 (64)
T 1wdc_A           30 DQRIGLSVIQRNIRKWLVLRN   50 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhcC
Confidence            345588899999999987654

>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B

Probab=80.51  E-value=0.65  Score=25.70  Aligned_cols=18  Identities=28%  Similarity=0.490  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy14956         54 EYCARLIQHAWRKHKQCR   71 (147)
Q Consensus        54 e~AA~vIQRA~R~~~l~r   71 (147)
                      .+||-+||.-||+++.++
T Consensus         5 iYAallI~d~~r~~k~~~   22 (23)
T 3dve_B            5 VYAALMIFDFYKQNKTSR   22 (26)
T ss_dssp             HHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            589999999999997654

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=80.17  E-value=1.2  Score=26.73  Aligned_cols=18  Identities=6%  Similarity=0.030  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHhhc
Q psy14956         55 YCARLIQHAWRKHKQCRA   72 (147)
Q Consensus        55 ~AA~vIQRA~R~~~l~r~   72 (147)
                      .||..||..||.|+.++.
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~   21 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQR   21 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            488999999999987664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00