Psyllid ID: psy15002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MDVFRPTTYSRRVQTFLAPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAKV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccEEEEccccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHccHHHcccEEEccccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEcccccccccccHHHccccccccEEEccccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccHHHHHHHHcccccccccccHHHccccHcccEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHHcEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHHHHHHcccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mdvfrpttysRRVQTflapkfgssLATSFLCLLLLLPccllqsvqqcpphneispcqcsvkkngldILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLrhnnlpkltgfiffgldirhltihnsslaVVEESSLSSIGKKLKrlnlggneltrvpqtslskLENLRKLELLHNRIALIeegdfegkaltqldlsqnslavvpspalksLNHLLILNLNHNKIsalhsnafqgldTLEILTIFENklsliepdsfKGLEKKLKRLnlggneltrvpqtslskLENLRKLELLHNRIALIeegdfeglhnLDSLVLAHnqlrtipprvfahlpllnsleldgnhihtvdpaafsgleakv
Flexible Loop (DISEMBL)
mdvfrpttysrrvqtflaPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLkrlnlggneltrvpqtslsklenlRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKrlnlggneltrvpqtslsklenlRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVdpaafsgleakv
Low Complexity Region (SEG)
MDVFRPTTYSRRVQTFLAPKFGSSLATSFlclllllpccllQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNsslavveesslssIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPAlkslnhllilnlnhnkisALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAKV
Disordered region (IsUnstruct)
********YSRRVQTFLAPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVE************RLNLG************SKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV**TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP**********
Disordered Region (DISOPRED)
***********************SLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAKV
Disordered Region (DISEMBL)
********YSRRVQTFLAPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLA**********GKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAKV
Disordered Region (DISPRO)
***FRPTTYSRRVQTFLAPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVFRPTTYSRRVQTFLAPKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q9GZU5	481	Nyctalopin OS=Homo sapien	yes	N/A	0.717	0.532	0.330	2e-23
Q6NUI6	762	Chondroadherin-like prote	no	N/A	0.635	0.297	0.319	1e-22
O94898	1065	Leucine-rich repeats and	no	N/A	0.725	0.243	0.290	2e-21
O02833	605	Insulin-like growth facto	N/A	N/A	0.731	0.431	0.310	2e-21
P35858	605	Insulin-like growth facto	no	N/A	0.661	0.390	0.315	3e-21
Q80X72	579	Leucine-rich repeat-conta	no	N/A	0.719	0.443	0.295	8e-21
P70193	1091	Leucine-rich repeats and	no	N/A	0.747	0.244	0.350	1e-20
P83503	476	Nyctalopin OS=Mus musculu	no	N/A	0.770	0.577	0.300	9e-20
Q496Z2	811	TLR4 interactor with leuc	no	N/A	0.669	0.294	0.329	2e-19
Q9DBB9	547	Carboxypeptidase N subuni	no	N/A	0.756	0.493	0.303	3e-19

>sp|Q9GZU5|NYX_HUMAN Nyctalopin OS=Homo sapiens GN=NYX PE=1 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 140/278 (50%), Gaps = 22/278 (7%)

Query: 55  PCQC---SVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFF 111
           PC+     + +NGL  L E     +   T+ +L+         L LRHNNL  +T   F 
Sbjct: 61  PCEAVSIDLDRNGLRFLGE-----RAFGTLPSLR--------RLSLRHNNLSFITPGAFK 107

Query: 112 GL-DIRHLTI-HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169
           GL  +  L + HN  L  +   + +++  +L+RL+L    L  VP+  L++L  LR+L  
Sbjct: 108 GLPRLAELRLAHNGDLRYLHARTFAAL-SRLRRLDLAACRLFSVPERLLAELPALRELAA 166

Query: 170 LHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNA 228
             N    +  G   G A LT   L +  +  V S +L+ L  L  L+L  N++ A+H+ A
Sbjct: 167 FDNLFRRVP-GALRGLANLTHAHLERGRIEAVASSSLQGLRRLRSLSLQANRVRAVHAGA 225

Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
           F     LE L + +N L+ +  D+F+GL ++L+ LNLGGN L RV +   + L  L  L 
Sbjct: 226 FGDCGVLEHLLLNDNLLAELPADAFRGL-RRLRTLNLGGNALDRVARAWFADLAELELLY 284

Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326
           L  N IA +EEG F+ L  L +L L  N+L  +    F
Sbjct: 285 LDRNSIAFVEEGAFQNLSGLLALHLNGNRLTVLAWVAF 322

Homo sapiens (taxid: 9606)

>sp|Q6NUI6|CHADL_HUMAN Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=2 SV=2

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 125/257 (48%), Gaps = 30/257 (11%)

Query: 116 RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 175
           RH+     +L  V ++    I +  +RL+L GN L  +P  +   + +L  L+L H  + 
Sbjct: 44  RHVACRYQNLTEVPDA----IPELTQRLDLQGNLLKVIPAAAFQGVPHLTHLDLRHCEVE 99

Query: 176 LIEEGDF------------------------EG-KALTQLDLSQNSLAVVPSPALKSLNH 210
           L+ EG F                        +G  +L +L+L  N+L  +      +L  
Sbjct: 100 LVAEGAFRGLGRLLLLNLASNHLRELPQEALDGLGSLRRLELEGNALEELRPGTFGALGA 159

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L  LNL HN +  L + AFQGL  +  L +  N LS++ P++  GL   L+RL+L  NEL
Sbjct: 160 LATLNLAHNALVYLPAMAFQGLLRVRWLRLSHNALSVLAPEALAGL-PALRRLSLHHNEL 218

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
             +P   LS+   L +LEL HN +    E D   L  L  L+L    L+ + PR FAH P
Sbjct: 219 QALPGPVLSQARGLARLELGHNPLTYAGEEDGLALPGLRELLLDGGALQALGPRAFAHCP 278

Query: 331 LLNSLELDGNHIHTVDP 347
            L++L+L GN + T+ P
Sbjct: 279 RLHTLDLRGNQLDTLPP 295

Homo sapiens (taxid: 9606)

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 6/265 (2%)

Query: 95  LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
           L L  N + ++    F  + +++L + N+ +  +E     ++   L  + L  N ++ +P
Sbjct: 149 LDLSSNIISEIKTSSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSLLVVKLNRNRMSMIP 208

Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLI 213
              + KL +L+ LEL  NRI ++E   F+G  +L  L + +N ++ +   A   LN++  
Sbjct: 209 -PKIFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEE 267

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L L HN ++ ++     GL  L+ L + +N +  I PD+++   ++L  L+L  N+LTR+
Sbjct: 268 LELEHNNLTRVNKGWLYGLRMLQQLYVSQNAIERISPDAWE-FCQRLSELDLSYNQLTRL 326

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI---PPRVFAHLP 330
            +++   L  L +L L  NR+  I +G F  L NL +L L +N++          FA L 
Sbjct: 327 DESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLT 386

Query: 331 LLNSLELDGNHIHTVDPAAFSGLEA 355
            L  L L GN I ++   AF GLE+
Sbjct: 387 SLTKLILQGNQIKSITKKAFIGLES 411

Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 26/287 (9%)

Query: 94  YLKLRHNNLPKLT-GFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
           +L L  N L  L  G   +   +  L + N+ L+ +E+     +G  L  LNLG N L  
Sbjct: 126 HLHLERNQLRSLAVGTFAYTPALALLGLSNNRLSRLEDGLFEGLGN-LWDLNLGWNSLAV 184

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPALKSLNHL 211
           +P  +   L  LR+L L  NR+A ++   F G A L +LDLS+N+L  + +     L  L
Sbjct: 185 LPDAAFRGLGGLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFAQLPRL 244

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK------------ 259
             L L+ N I+A+   AF GL  L  L +  N+++ +  D+F GL               
Sbjct: 245 QKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIAS 304

Query: 260 -----------LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
                      L+ L LG N + ++ + S   L  L  L L HN++  ++ G F GL N+
Sbjct: 305 LRPRTFEDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNV 364

Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
             + L+ N LR +P +VF  L  L+SL L+G+ +  + P  F+GL  
Sbjct: 365 AVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFAGLSG 411

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|P35858|ALS_HUMAN Insulin-like growth factor-binding protein complex acid labile subunit OS=Homo sapiens GN=IGFALS PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 27/263 (10%)

Query: 118 LTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 177
           L + N+ L+ +E+     +G  L  LNLG N L  +P  +   L +LR+L L  NR+A +
Sbjct: 151 LGLSNNRLSRLEDGLFEGLGS-LWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYL 209

Query: 178 EEGDFEGKA-LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLE 236
           +   F G A L +LDLS+N+L  + +     L  L  L L+ N I+A+   AF GL  L 
Sbjct: 210 QPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALR 269

Query: 237 ILTIFENK------------------------LSLIEPDSFKGLEKKLKRLNLGGNELTR 272
            L +  N+                        ++ + P +FK L   L+ L LG N + +
Sbjct: 270 WLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHF-LEELQLGHNRIRQ 328

Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
           + + S   L  L  L L HN++  ++ G F GL N+  + L+ N LR +P +VF  L  L
Sbjct: 329 LAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKL 388

Query: 333 NSLELDGNHIHTVDPAAFSGLEA 355
           +SL L+G+ +  + P  F+GL  
Sbjct: 389 HSLHLEGSCLGRIRPHTFTGLSG 411

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Homo sapiens (taxid: 9606)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 4/261 (1%)

Query: 95  LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           LK+  N L  +    F  L  +RHL++ N+ L  +       +   L+ L L  N+L ++
Sbjct: 82  LKMEKNELANIMPGAFRNLGSLRHLSLANNKLKNLPVRLFQDV-NNLETLLLSNNQLVQI 140

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLL 212
                S+  NL++L+L  N +  I EG F+    LT+L+L  N    +     + L +L 
Sbjct: 141 QPAQFSQFSNLKELQLYGNNLEYIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQ 200

Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
           +L L  N++S +    F  L  L+ L + EN++  + P  F    + L+RL L  N ++ 
Sbjct: 201 VLRLYENRLSDIPMGTFDALGNLQELALQENQIGTLSPGLFHN-NRNLQRLYLSNNHISH 259

Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
           +P     +L +L KL L  N +  +  G F  + NL  L L +N + ++P   F+HL  L
Sbjct: 260 LPPGIFMQLPHLNKLTLFGNSLKELSPGVFGPMPNLRELWLYNNHITSLPDNAFSHLNQL 319

Query: 333 NSLELDGNHIHTVDPAAFSGL 353
             L L  N +  + P AF+GL
Sbjct: 320 QVLILSHNQLSYISPGAFNGL 340

Mus musculus (taxid: 10090)

>sp|P70193|LRIG1_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Mus musculus GN=Lrig1 PE=2 SV=2

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 150/274 (54%), Gaps = 7/274 (2%)

Query: 87  KSGLIIFYLKLRHNNLPKLTGFIF-FGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
           KS L +  L L  NN+ ++    F  GL IR L + ++ ++++E  +   + + L  L L
Sbjct: 138 KSYLSLEVLDLSSNNITEIRSSCFPNGLRIRELNLASNRISILESGAFDGLSRSLLTLRL 197

Query: 146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA 204
             N +T++P  +  KL  L +L+L  NRI LIE   F+G  +L  L L +N+++ +   A
Sbjct: 198 SKNRITQLPVKAF-KLPRLTQLDLNRNRIRLIEGLTFQGLDSLEVLRLQRNNISRLTDGA 256

Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLN 264
              L+ + +L+L +N +  ++S +  GL  L  L +  N +S I+ D +    +KL  L 
Sbjct: 257 FWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSISRIQRDGWS-FCQKLHELI 315

Query: 265 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR-TIPP 323
           L  N LTR+ + SL++L +L  L L HN I+ I EG F+GL +L  L L HN++  TI  
Sbjct: 316 LSFNNLTRLDEESLAELSSLSILRLSHNAISHIAEGAFKGLKSLRVLDLDHNEISGTIED 375

Query: 324 R--VFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
               F  L  L+ L L GN I +V   AFSGLE+
Sbjct: 376 TSGAFTGLDNLSKLTLFGNKIKSVAKRAFSGLES 409

Act as a feedback negative regulator of signaling by receptor tyrosine kinases, through a mechanism that involves enhancement of receptor ubiquitination and accelerated intracellular degradation.

Mus musculus (taxid: 10090)

>sp|P83503|NYX_MOUSE Nyctalopin OS=Mus musculus GN=Nyx PE=2 SV=1

 Score = 98.2 bits (243), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 143/303 (47%), Gaps = 28/303 (9%)

Query: 44  VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKS-----KSGLIIF----- 93
           ++ CP     + C CS  + G  + C+    Q++        +     ++GL I      
Sbjct: 23  LRACP-----AACTCSHVERGCSVRCDRAGLQRVPQEFPCEAASIDLDRNGLRILGERAF 77

Query: 94  -------YLKLRHNNLPKLTGFIFFGL-DIRHLTI-HNSSLAVVEESSLSSIGKKLKRLN 144
                   L LRHNNL  +T   F GL  +  L + HN  L  +   + +++G+ L+RL+
Sbjct: 78  GTLPSLRRLSLRHNNLSFITPGAFKGLPRLAELRLAHNGELRYLHVRTFAALGR-LRRLD 136

Query: 145 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSP 203
           L    L  VP+  L++L  LR+L    N    +  G   G A LT     ++ +  V S 
Sbjct: 137 LAACRLFSVPERLLAELPALRELTAFDNLFRRVP-GALRGLANLTHAHFERSRIEAVASG 195

Query: 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
           +L  +  L  L+L  N++ A+H+ AF     LE L + +N L+ +   +F+GL ++L+ L
Sbjct: 196 SLLGMRRLRSLSLQANRVRAVHAGAFGDCGALEDLLLNDNLLATLPAAAFRGL-RRLRTL 254

Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
           NLGGN L  V +   S L  L  L L  N I  +EEG F+ L  L +L L  N+L  +  
Sbjct: 255 NLGGNALGSVARAWFSDLAELELLYLDRNSITFVEEGAFQNLSGLLALHLNGNRLTVLSW 314

Query: 324 RVF 326
             F
Sbjct: 315 AAF 317

Mus musculus (taxid: 10090)

>sp|Q496Z2|TRIL_RAT TLR4 interactor with leucine rich repeats OS=Rattus norvegicus GN=Tril PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 116 RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 175
           +HL   N  L  V ++S     + +   +LGGN +T +      +L  LR+L+L +N+I 
Sbjct: 37  QHLLCTNRGLRAVPKTSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLRRLDLQYNQIR 96

Query: 176 LIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDT 234
            +    FE    L +L L  N L  +    L  L  L IL  N N+I  L   +F+GL++
Sbjct: 97  SLHPKTFEKLSRLEELYLGNNLLQALAPGTLAPLRKLRILYANGNEIGRLSRGSFEGLES 156

Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
           L  L +  N L  + PD+       L  L+L  N +  + + + ++L  LR L L  N +
Sbjct: 157 LVKLRLDGNVLGAL-PDAVFAPLGNLLYLHLEANRIRFLGKNAFTQLGKLRFLNLSANEL 215

Query: 295 --ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
             +L     F  L +L +L+L+ N L+ + PRVF HLP L  L L GN +  + P AF G
Sbjct: 216 QPSLRHAATFVPLRSLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPEAFWG 275

Query: 353 LEA 355
           LEA
Sbjct: 276 LEA 278

Component of the TLR4 signaling complex. Mediate the innate immune response to bacterial lipopolysaccharide (LPS) leading to cytokine secretion and the inflammatory response.

Rattus norvegicus (taxid: 10116)

>sp|Q9DBB9|CPN2_MOUSE Carboxypeptidase N subunit 2 OS=Mus musculus GN=Cpn2 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 133/293 (45%), Gaps = 23/293 (7%)

Query: 66  DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSL 125
           DI    TD   ++   TT+++++           +  P LT  +F    +RHL       
Sbjct: 46  DIPPHITDIVFVETAFTTVRTRA----------FSGSPNLTKVVFLNTQVRHL------- 88

Query: 126 AVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EG 184
              E  +   +  +L+ L + G+ ++ +     S L +L KL L  +R+A + E  F   
Sbjct: 89  ---EPDAFGGL-PRLQDLEITGSPVSNLSAHIFSNLSSLEKLTLDFDRLAGLPEDLFCHM 144

Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
             L  L L  N L  +P    +SL  L  LNL  N ++ L   AFQ L  L++L +  N 
Sbjct: 145 DILESLQLQGNQLRTLPGRLFQSLRDLRTLNLAQNLLTQLPKGAFQSLTGLQMLKLSNNM 204

Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
           L+ + P+   G    L+ L L GN +T +     S+L +L  L L HN I  +    F  
Sbjct: 205 LARL-PEGALGSLSSLQELFLDGNAITELSPHLFSQLFSLEMLWLQHNAICHLPVSLFSS 263

Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAKV 357
           LHNL  L L  N LRT+P  +FAH   L  L L  N + T+   AF+ L   V
Sbjct: 264 LHNLTFLSLKDNALRTLPEGLFAHNQGLLHLSLSYNQLETIPEGAFTNLSRLV 316

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
270013642	479	hypothetical protein TcasGA2_TC012268 [T	0.747	0.557	0.590	8e-95
91089843	468	PREDICTED: similar to slit protein [Trib	0.733	0.559	0.596	9e-95
158295509	503	AGAP006183-PA [Anopheles gambiae str. PE	0.739	0.524	0.608	4e-94
312373555	607	hypothetical protein AND_17272 [Anophele	0.739	0.434	0.608	1e-93
193643421	490	PREDICTED: slit homolog 3 protein-like i	0.739	0.538	0.583	3e-93
195430118	486	GK21558 [Drosophila willistoni] gi|19415	0.778	0.572	0.552	2e-86
195029059	505	GH19994 [Drosophila grimshawi] gi|193903	0.733	0.518	0.558	3e-86
19921788	470	CG14762, isoform A [Drosophila melanogas	0.736	0.559	0.543	8e-83
194863620	470	GG10684 [Drosophila erecta] gi|190662397	0.736	0.559	0.543	8e-83
308193433	440	RT10125p [Drosophila melanogaster]	0.736	0.597	0.543	1e-82

>gi|270013642|gb|EFA10090.1| hypothetical protein TcasGA2_TC012268 [Tribolium castaneum]

 Score =  353 bits (905), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 186/315 (59%), Positives = 217/315 (68%), Gaps = 48/315 (15%)

Query: 40  LLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRH 99
           L +  QQCP  +EISPC C++KKNGLDILCEFTD Q I   M  LK +   +IFYLKLRH
Sbjct: 16  LFEVQQQCPARSEISPCSCTLKKNGLDILCEFTDQQHITSAMDKLKGRE-FVIFYLKLRH 74

Query: 100 NNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLS 159
           NNL KLTG+IF GLDI HLTIHNSSL+ +EE SLSSIG                      
Sbjct: 75  NNLRKLTGYIFLGLDIHHLTIHNSSLSTMEEMSLSSIG---------------------- 112

Query: 160 KLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219
                                    K LTQLD+SQNSL  VPS A  SL+ LLILN+NHN
Sbjct: 113 -------------------------KMLTQLDVSQNSLTAVPSSAFASLHQLLILNMNHN 147

Query: 220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279
           KIS +HS AFQGLDTLEILT++ENK++ IE  +F GLEKKLKRLNLGGN LT VPQ +LS
Sbjct: 148 KISVVHSKAFQGLDTLEILTLYENKITTIEDGAFVGLEKKLKRLNLGGNSLTEVPQKALS 207

Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
            L+ L+KLE+  NR+  I+EGDFEGL NLDSL LAHN+LR +P RVF+HL +LNSLELDG
Sbjct: 208 ILDTLKKLEMQENRLTEIKEGDFEGLKNLDSLGLAHNKLRQVPSRVFSHLTVLNSLELDG 267

Query: 340 NHIHTVDPAAFSGLE 354
           N+I T+DP AF+GLE
Sbjct: 268 NNIDTIDPEAFAGLE 282

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089843|ref|XP_970465.1| PREDICTED: similar to slit protein [Tribolium castaneum]

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 185/310 (59%), Positives = 215/310 (69%), Gaps = 48/310 (15%)

Query: 45  QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPK 104
           QQCP  +EISPC C++KKNGLDILCEFTD Q I   M  LK +   +IFYLKLRHNNL K
Sbjct: 10  QQCPARSEISPCSCTLKKNGLDILCEFTDQQHITSAMDKLKGRE-FVIFYLKLRHNNLRK 68

Query: 105 LTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENL 164
           LTG+IF GLDI HLTIHNSSL+ +EE SLSSIG                           
Sbjct: 69  LTGYIFLGLDIHHLTIHNSSLSTMEEMSLSSIG--------------------------- 101

Query: 165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
                               K LTQLD+SQNSL  VPS A  SL+ LLILN+NHNKIS +
Sbjct: 102 --------------------KMLTQLDVSQNSLTAVPSSAFASLHQLLILNMNHNKISVV 141

Query: 225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENL 284
           HS AFQGLDTLEILT++ENK++ IE  +F GLEKKLKRLNLGGN LT VPQ +LS L+ L
Sbjct: 142 HSKAFQGLDTLEILTLYENKITTIEDGAFVGLEKKLKRLNLGGNSLTEVPQKALSILDTL 201

Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
           +KLE+  NR+  I+EGDFEGL NLDSL LAHN+LR +P RVF+HL +LNSLELDGN+I T
Sbjct: 202 KKLEMQENRLTEIKEGDFEGLKNLDSLGLAHNKLRQVPSRVFSHLTVLNSLELDGNNIDT 261

Query: 345 VDPAAFSGLE 354
           +DP AF+GLE
Sbjct: 262 IDPEAFAGLE 271

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295509|ref|XP_316248.3| AGAP006183-PA [Anopheles gambiae str. PEST] gi|157016072|gb|EAA11472.3| AGAP006183-PA [Anopheles gambiae str. PEST]

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 190/312 (60%), Positives = 217/312 (69%), Gaps = 48/312 (15%)

Query: 43  SVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNL 102
           S Q CPP ++ISPC C VKKNGLDILCE TD Q I   M+ LK KS  IIFYLKLRHNNL
Sbjct: 32  SPQTCPPGSDISPCVCQVKKNGLDILCEATDVQHITKAMSALKGKSP-IIFYLKLRHNNL 90

Query: 103 PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLE 162
           PKL GF+F  LDIRHLTIHNSSLA +EE                         TSLS L 
Sbjct: 91  PKLQGFVFLALDIRHLTIHNSSLATIEE-------------------------TSLSSL- 124

Query: 163 NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
                                G+ LTQLD+SQN L  VPS ALK+L++LLILNLNHN+IS
Sbjct: 125 ---------------------GRGLTQLDVSQNQLMSVPSSALKNLHYLLILNLNHNRIS 163

Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
            +H+ AF+GLDTLEILTI+ENKL+ IEPD+F+GL+KKLKRLNLGGN+LT VPQ +LS L+
Sbjct: 164 QIHNRAFEGLDTLEILTIYENKLTFIEPDAFRGLDKKLKRLNLGGNDLTAVPQKALSMLD 223

Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
           NLRKLEL  NRI  I+EGDFEGL NLDSL+LAHNQL  +P RVF HL LLNSLEL+GN I
Sbjct: 224 NLRKLELQENRIKTIKEGDFEGLENLDSLILAHNQLTEVPARVFFHLTLLNSLELEGNSI 283

Query: 343 HTVDPAAFSGLE 354
             +   AF GLE
Sbjct: 284 SYIAKEAFEGLE 295

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373555|gb|EFR21270.1| hypothetical protein AND_17272 [Anopheles darlingi]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/312 (60%), Positives = 217/312 (69%), Gaps = 48/312 (15%)

Query: 43  SVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNL 102
           S Q CPP ++I+PC C VKKNGLDILCE TD Q I   M+ LK KS  IIFYLKLRHNNL
Sbjct: 138 SPQTCPPGSDINPCVCQVKKNGLDILCEATDAQHITKAMSALKGKSP-IIFYLKLRHNNL 196

Query: 103 PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLE 162
           PKL GF+F  LDIRHLTIHNSSLA +EE                         TSLS L 
Sbjct: 197 PKLQGFVFLALDIRHLTIHNSSLATIEE-------------------------TSLSSL- 230

Query: 163 NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
                                G+ LTQLD+SQN L  VPS ALK+L++LLILNLNHN+IS
Sbjct: 231 ---------------------GRGLTQLDVSQNQLMSVPSSALKNLHYLLILNLNHNRIS 269

Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
            +H+ AF+GLDTLEILTI+ENKL+ IEPD+F+GL+KKLKRLNLGGN+LT VPQ +LS L+
Sbjct: 270 QIHNRAFEGLDTLEILTIYENKLTFIEPDAFRGLDKKLKRLNLGGNDLTAVPQKALSMLD 329

Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
           NLRKLEL  NRI  I+EGDFEGL NLDSL+LAHNQL  +P RVF HL LLNSLEL+GN I
Sbjct: 330 NLRKLELQENRIKTIKEGDFEGLENLDSLILAHNQLTEVPARVFFHLTLLNSLELEGNSI 389

Query: 343 HTVDPAAFSGLE 354
             V   AF GLE
Sbjct: 390 SYVAKEAFEGLE 401

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193643421|ref|XP_001943456.1| PREDICTED: slit homolog 3 protein-like isoform 1 [Acyrthosiphon pisum] gi|328701463|ref|XP_003241608.1| PREDICTED: slit homolog 3 protein-like isoform 2 [Acyrthosiphon pisum]

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/312 (58%), Positives = 217/312 (69%), Gaps = 48/312 (15%)

Query: 44  VQQCPPHNEISPCQCSVKKNG-LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNL 102
           +QQCP H EI+PC C+VKKNG LDILCEFTD Q I  TM  LK K  L+IFYLKLRHNNL
Sbjct: 29  IQQCPTHGEIAPCVCTVKKNGGLDILCEFTDLQHISKTMAVLKGKPSLVIFYLKLRHNNL 88

Query: 103 PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLE 162
           PKL GF+F G+DIRHLTIHNS+LAV                         V ++SLS + 
Sbjct: 89  PKLQGFVFLGMDIRHLTIHNSTLAV-------------------------VEESSLSSI- 122

Query: 163 NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
                                GKALTQLDLSQNSL+ VP+PALKSL+ LLI NLNHNKIS
Sbjct: 123 ---------------------GKALTQLDLSQNSLSSVPTPALKSLDRLLIFNLNHNKIS 161

Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
           A+H+NAF+G+ TLEILT++EN+L+ IE ++F G EKKLKRLN+GGNEL RVP  +L  ++
Sbjct: 162 AIHANAFEGMSTLEILTLYENRLTNIEANAFAGTEKKLKRLNIGGNELNRVPSGALQTMD 221

Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
           NL+KLE+  N+I  I EGDF GL  LD L+LAHN L+ IP +VF HLPLLNSLELDGN I
Sbjct: 222 NLKKLEIQENKITSISEGDFIGLQTLDMLILAHNYLKHIPAKVFRHLPLLNSLELDGNQI 281

Query: 343 HTVDPAAFSGLE 354
            ++D  AF GLE
Sbjct: 282 SSIDEEAFFGLE 293

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430118|ref|XP_002063104.1| GK21558 [Drosophila willistoni] gi|194159189|gb|EDW74090.1| GK21558 [Drosophila willistoni]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/331 (55%), Positives = 219/331 (66%), Gaps = 53/331 (16%)

Query: 29  FLCLLLLLPC---CLLQSVQQ--CPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTT 83
           FL L +L+ C    L QS  Q  CP  N+ISPC C+VKKNGLDILCE TD   I  +M T
Sbjct: 4   FLFLPVLILCLGQALAQSTPQQVCPEQNDISPCICTVKKNGLDILCETTDLVHITKSMGT 63

Query: 84  LKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRL 143
           LK KS  IIFYLKLRHNNLPKL GF+F  LDIRHLTIHNSS                   
Sbjct: 64  LKGKSP-IIFYLKLRHNNLPKLQGFVFLALDIRHLTIHNSS------------------- 103

Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSP 203
                 L  + + +LS L                      GK LTQLD+S N +  VPSP
Sbjct: 104 ------LAAIEENALSSL----------------------GKGLTQLDVSLNQMKTVPSP 135

Query: 204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
           ALK L HLLILNLNHNKIS +H+NAF+GLDTLEILT++ENK++ ++ ++F+GLEKKLKRL
Sbjct: 136 ALKHLYHLLILNLNHNKISVIHNNAFEGLDTLEILTLYENKITQVDEEAFRGLEKKLKRL 195

Query: 264 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
           NLGGN+LT VPQ +LS L+ L+KLE+  N+I  I EGDFEGL NLDSL+LAHN + ++P 
Sbjct: 196 NLGGNDLTSVPQKALSILDTLKKLEIQENKIRTISEGDFEGLENLDSLILAHNMITSVPA 255

Query: 324 RVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            VF+HL  LNSLEL+GN I  +D  AF GLE
Sbjct: 256 NVFSHLAQLNSLELEGNKISVIDKDAFKGLE 286

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029059|ref|XP_001987392.1| GH19994 [Drosophila grimshawi] gi|193903392|gb|EDW02259.1| GH19994 [Drosophila grimshawi]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/310 (55%), Positives = 209/310 (67%), Gaps = 48/310 (15%)

Query: 45  QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPK 104
           Q CP  ++ISPC C+VKKNGLD+LCE TD   I  +M TLK KS  IIFYLKLRHNNLPK
Sbjct: 44  QVCPEQSDISPCICTVKKNGLDVLCEATDLMHITKSMGTLKGKSP-IIFYLKLRHNNLPK 102

Query: 105 LTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENL 164
           L GF+F  LDIRHLTIHNSS                         L  + + +LS L   
Sbjct: 103 LQGFVFLALDIRHLTIHNSS-------------------------LAAIEENALSSL--- 134

Query: 165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
                              GK LTQLD+S N +  VPS AL+ L HLLILNLNHNKI+ L
Sbjct: 135 -------------------GKGLTQLDVSLNQMKTVPSQALQHLYHLLILNLNHNKITVL 175

Query: 225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENL 284
           H+NAF+GLDTLEILT++ENK++ ++P++F+GLEKKLKRLNLGGN+LT VPQ +LS L+ L
Sbjct: 176 HNNAFEGLDTLEILTLYENKITQVDPEAFRGLEKKLKRLNLGGNDLTNVPQKALSILDTL 235

Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
           +KLE+  N+I  I EGDFEGL NLDSL+LAHN + T+P  VF HL +LNSLEL+GN I  
Sbjct: 236 KKLEIQENKIRTISEGDFEGLQNLDSLILAHNMITTVPANVFTHLSMLNSLELEGNKISI 295

Query: 345 VDPAAFSGLE 354
           +D  AF GLE
Sbjct: 296 IDKDAFKGLE 305

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921788|ref|NP_610346.1| CG14762, isoform A [Drosophila melanogaster] gi|16767862|gb|AAL28149.1| GH01839p [Drosophila melanogaster] gi|21627755|gb|AAF59148.2| CG14762, isoform A [Drosophila melanogaster] gi|220944972|gb|ACL85029.1| CG14762-PA [synthetic construct] gi|220954740|gb|ACL89913.1| CG14762-PA [synthetic construct]

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 207/311 (66%), Gaps = 48/311 (15%)

Query: 44  VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLP 103
            Q CP  +EI+PC C+VKKNGLDILCE TD   I  +M TLK KS  IIFYLKLRHNNLP
Sbjct: 36  TQVCPEQSEIAPCICTVKKNGLDILCETTDLAHITKSMGTLKGKSP-IIFYLKLRHNNLP 94

Query: 104 KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLEN 163
           KL GF+F  LDIRHLTIHNSSLA                          + + +LS L  
Sbjct: 95  KLQGFVFLALDIRHLTIHNSSLAA-------------------------IEENALSSL-- 127

Query: 164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
                               G  LTQLD+S N +  VPS AL+ L HLLILNLNHNKI+ 
Sbjct: 128 --------------------GAGLTQLDVSLNQMKTVPSQALQHLFHLLILNLNHNKITV 167

Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
           +H+NAF+GL+TLEILT++ENK++ I+P++F+GLE  +KRLNLGGN+LT +PQ +LS L  
Sbjct: 168 IHNNAFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLTNIPQKALSILST 227

Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
           L+KLE+  N+I  I EGDFEGL +LDSL+LAHN + T+P  VF+HL LLNSLEL+GN I 
Sbjct: 228 LKKLEIQENKIRTISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKIS 287

Query: 344 TVDPAAFSGLE 354
            +D  AF GLE
Sbjct: 288 VIDKDAFKGLE 298

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863620|ref|XP_001970530.1| GG10684 [Drosophila erecta] gi|190662397|gb|EDV59589.1| GG10684 [Drosophila erecta]

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 207/311 (66%), Gaps = 48/311 (15%)

Query: 44  VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLP 103
            Q CP  +EI+PC C+VKKNGLDILCE TD   I  +M TLK KS  IIFYLKLRHNNLP
Sbjct: 36  AQVCPEQSEIAPCICTVKKNGLDILCETTDLAHITKSMGTLKGKSP-IIFYLKLRHNNLP 94

Query: 104 KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLEN 163
           KL GF+F  LDIRHLTIHNSS                         L  + + +LS L  
Sbjct: 95  KLQGFVFLALDIRHLTIHNSS-------------------------LAAIEENALSSL-- 127

Query: 164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
                               G  LTQLD+S N +  VPS AL+ L HLLILNLNHNKI+ 
Sbjct: 128 --------------------GAGLTQLDVSLNQMKTVPSQALQHLFHLLILNLNHNKITV 167

Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
           +H+NAF+GL+TLEILT++ENK++ I+P++F+GLE  +KRLNLGGN+LTR+PQ +LS L  
Sbjct: 168 IHNNAFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLTRIPQKALSILST 227

Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
           L+KLE+  N+I  I EGDFEGL +LDSL+LAHN + T+P  VF+HL LLNSLEL+GN I 
Sbjct: 228 LKKLEIQENKIRTISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKIS 287

Query: 344 TVDPAAFSGLE 354
            +D  AF GLE
Sbjct: 288 AIDKDAFKGLE 298

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308193433|gb|ADO16258.1| RT10125p [Drosophila melanogaster]

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 207/311 (66%), Gaps = 48/311 (15%)

Query: 44  VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLP 103
            Q CP  +EI+PC C+VKKNGLDILCE TD   I  +M TLK KS  IIFYLKLRHNNLP
Sbjct: 6   TQVCPEQSEIAPCICTVKKNGLDILCETTDLAHITKSMGTLKGKSP-IIFYLKLRHNNLP 64

Query: 104 KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLEN 163
           KL GF+F  LDIRHLTIHNSSLA                          + + +LS L  
Sbjct: 65  KLQGFVFLALDIRHLTIHNSSLAA-------------------------IEENALSSL-- 97

Query: 164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
                               G  LTQLD+S N +  VPS AL+ L HLLILNLNHNKI+ 
Sbjct: 98  --------------------GAGLTQLDVSLNQMKTVPSQALQHLFHLLILNLNHNKITV 137

Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
           +H+NAF+GL+TLEILT++ENK++ I+P++F+GLE  +KRLNLGGN+LT +PQ +LS L  
Sbjct: 138 IHNNAFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLTNIPQKALSILST 197

Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
           L+KLE+  N+I  I EGDFEGL +LDSL+LAHN + T+P  VF+HL LLNSLEL+GN I 
Sbjct: 198 LKKLEIQENKIRTISEGDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKIS 257

Query: 344 TVDPAAFSGLE 354
            +D  AF GLE
Sbjct: 258 VIDKDAFKGLE 268

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
FB|FBgn0033250	470	CG14762 [Drosophila melanogast	0.857	0.651	0.414	3.6e-50
MGI|MGI:107935	1091	Lrig1 "leucine-rich repeats an	0.843	0.275	0.312	9.8e-24
UNIPROTKB|Q96JA1	1093	LRIG1 "Leucine-rich repeats an	0.787	0.257	0.307	1.7e-21
UNIPROTKB|G3N218	478	G3N218 "Uncharacterized protei	0.627	0.468	0.334	5.9e-21
UNIPROTKB|Q8TF66	581	LRRC15 "Leucine-rich repeat-co	0.719	0.442	0.272	2.2e-20
MGI|MGI:1921738	579	Lrrc15 "leucine rich repeat co	0.719	0.443	0.268	2.8e-20
UNIPROTKB|F1NJ43	466	NYX "Uncharacterized protein"	0.756	0.579	0.315	4.2e-20
MGI|MGI:1315205	1521	Slit2 "slit homolog 2 (Drosoph	0.442	0.103	0.306	2e-14
UNIPROTKB|I3LFJ7	477	NYX "Uncharacterized protein"	0.619	0.463	0.330	4.5e-20
UNIPROTKB|Q9GZU5	481	NYX "Nyctalopin" [Homo sapiens	0.627	0.465	0.326	5.9e-20

FB|FBgn0033250 CG14762 [Drosophila melanogaster (taxid:7227)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 129/311 (41%), Positives = 166/311 (53%)

Query:    45 QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPK 104
             Q CP  +EI+PC C+VKKNGLDILCE TD   I  +M TLK KS  IIFYLKLRHNNLPK
Sbjct:    37 QVCPEQSEIAPCICTVKKNGLDILCETTDLAHITKSMGTLKGKSP-IIFYLKLRHNNLPK 95

Query:   105 LTGFIFFGLDIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTRVPQTSLSKLENL 164
             L GF+F  LDIRHLTIHN             +G  L +L++  N++  VP  +L  L +L
Sbjct:    96 LQGFVFLALDIRHLTIHNSSLAAIEENALSSLGAGLTQLDVSLNQMKTVPSQALQHLFHL 155

Query:   165 RKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVV-PSPAXXXXXXXXXXXXXXXXXX 222
               L L HN+I +I    FEG + L  L L +N +  + P                     
Sbjct:   156 LILNLNHNKITVIHNNAFEGLETLEILTLYENKITQIDPEAFRGLEDHIKRLNLGGNDLT 215

Query:   223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
              +   A   L TL+ L I ENK+  I    F+GL+  L  L L  N +T VP    S L 
Sbjct:   216 NIPQKALSILSTLKKLEIQENKIRTISEGDFEGLQS-LDSLILAHNMITTVPANVFSHLT 274

Query:   283 NLRKLELLHNRIALIEEGDFEGLH-NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 341
              L  LEL  N+I++I++  F+GL  NL  L L  NQ+ TIP      L  L  L+L  N+
Sbjct:   275 LLNSLELEGNKISVIDKDAFKGLEENLQYLRLGDNQIHTIPSEALRPLHRLRHLDLRNNN 334

Query:   342 IHTVDPAAFSG 352
             I+ +   AF+G
Sbjct:   335 INVLAEDAFTG 345

GO:0048812 "neuron projection morphogenesis" evidence=IMP

MGI|MGI:107935 Lrig1 "leucine-rich repeats and immunoglobulin-like domains 1" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 9.8e-24, P = 9.8e-24
 Identities = 97/310 (31%), Positives = 149/310 (48%)

Query:    51 NEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIF 110
             NE++    S+    + ++  F  + KI  ++   + KS L +  L L  NN+ ++    F
Sbjct:   104 NELTAIP-SLGAASIGVVSLFLQHNKIL-SVDGSQLKSYLSLEVLDLSSNNITEIRSSCF 161

Query:   111 -FGLDIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169
               GL IR L + +             + + L  L L  N +T++P  +  KL  L +L+L
Sbjct:   162 PNGLRIRELNLASNRISILESGAFDGLSRSLLTLRLSKNRITQLPVKAF-KLPRLTQLDL 220

Query:   170 LHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNA 228
               NRI LIE   F+G  +L  L L +N+++ +   A                   ++S +
Sbjct:   221 NRNRIRLIEGLTFQGLDSLEVLRLQRNNISRLTDGAFWGLSKMHVLHLEYNSLVEVNSGS 280

Query:   229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
               GL  L  L +  N +S I+ D +   +K L  L L  N LTR+ + SL++L +L  L 
Sbjct:   281 LYGLTALHQLHLSNNSISRIQRDGWSFCQK-LHELILSFNNLTRLDEESLAELSSLSILR 339

Query:   289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLR-TIPPR--VFAHLPLLNSLELDGNHIHTV 345
             L HN I+ I EG F+GL +L  L L HN++  TI      F  L  L+ L L GN I +V
Sbjct:   340 LSHNAISHIAEGAFKGLKSLRVLDLDHNEISGTIEDTSGAFTGLDNLSKLTLFGNKIKSV 399

Query:   346 DPAAFSGLEA 355
                AFSGLE+
Sbjct:   400 AKRAFSGLES 409

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96JA1 LRIG1 "Leucine-rich repeats and immunoglobulin-like domains protein 1" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 89/289 (30%), Positives = 137/289 (47%)

Query:    71 FTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIF-FGLDIRHLTIHNXXXXXXX 129
             F  + KI+ ++   + K+ L +  L L  NN+ ++    F  G  I+ L +         
Sbjct:   121 FLQHNKIR-SVEGSQLKAYLSLEVLDLSLNNITEVRNTCFPHGPPIKELNLAGNRIGTLE 179

Query:   130 XXXXXXIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALT 188
                   + + L  L L  N +T++P  +  KL  L +L+L  NRI LIE   F+G  +L 
Sbjct:   180 LGAFDGLSRSLLTLRLSKNRITQLPVRAF-KLPRLTQLDLNRNRIRLIEGLTFQGLNSLE 238

Query:   189 QLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLI 248
              L L +N+++ +   A                   ++S +  GL  L  L +  N ++ I
Sbjct:   239 VLKLQRNNISKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSIARI 298

Query:   249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
                 +   +K L  L L  N LTR+ + SL++L +L  L L HN I+ I EG F+GL +L
Sbjct:   299 HRKGWSFCQK-LHELVLSFNNLTRLDEESLAELSSLSVLRLSHNSISHIAEGAFKGLRSL 357

Query:   309 DSLVLAHNQLR-TIPPR--VFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
               L L HN++  TI      F+ L  L+ L L GN I +V   AFSGLE
Sbjct:   358 RVLDLDHNEISGTIEDTSGAFSGLDSLSKLTLFGNKIKSVAKRAFSGLE 406

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3N218 G3N218 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 77/230 (33%), Positives = 111/230 (48%)

Query:    95 LKLRHNNLPKLTGFIFFGLD-IRHLTI-HNXXXXXXXXXXXXXIGKKLKRLNLGGNELTR 152
             L LRHNNL  +T   F GL  +  L++ HN             +G+ L+RL+L    L  
Sbjct:    87 LSLRHNNLSFITPGAFKGLPRLAELSLAHNGDLRYLHARTFTALGR-LRRLDLTVCRLFS 145

Query:   153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPAXXXXXXX 211
             VP+  L++L  LR+L    N    +  G   G A LT   L ++ +  V S +       
Sbjct:   146 VPERLLAELPALRELAAFDNLFRRVP-GALRGLANLTHAHLERSRIEAVASSSLLGLRRL 204

Query:   212 XXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
                        A+H  AF+    LE L + +N L+ +  D+F GL ++L+ LNLGGN L 
Sbjct:   205 RSLSLQGNRVRAVHGGAFRDCSALEHLLLNDNLLAALPADAFLGL-RRLRTLNLGGNALG 263

Query:   272 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
             RV +   ++L  L  L L  NRIA +EEG F+ L  L +L L  N L  +
Sbjct:   264 RVVRAWFAELAELELLYLDRNRIAFVEEGAFQNLSGLLALHLNGNHLTVL 313

GO:0007601 "visual perception" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q8TF66 LRRC15 "Leucine-rich repeat-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 2.2e-20, P = 2.2e-20
 Identities = 71/261 (27%), Positives = 120/261 (45%)

Query:    95 LKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTRV 153
             L++  N L ++T   F  L  +R+L++ N             +   L+ L L  N+L ++
Sbjct:    82 LRIEKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDS-LESLLLSSNQLLQI 140

Query:   154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPAXXXXXXXX 212
                  S+  NL++L+L  N +  I +G F+    LT+L+L +NSL  +            
Sbjct:   141 QPAHFSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQ 200

Query:   213 XXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
                        +    F GL  L+ L + +N++ L+ P  F      L+RL L  N +++
Sbjct:   201 VLRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHN-NHNLQRLYLSNNHISQ 259

Query:   273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
             +P +   +L  L +L L  N +  +  G F  + NL  L L  N + ++P  VF++L  L
Sbjct:   260 LPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQL 319

Query:   333 NSLELDGNHIHTVDPAAFSGL 353
               L L  N I  + P AF+GL
Sbjct:   320 QVLILSRNQISFISPGAFNGL 340

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921738 Lrrc15 "leucine rich repeat containing 15" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 70/261 (26%), Positives = 113/261 (43%)

Query:    95 LKLRHNNLPKLTGFIFFGL-DIRHLTIHNXXXXXXXXXXXXXIGKKLKRLNLGGNELTRV 153
             LK+  N L  +    F  L  +RHL++ N             +   L+ L L  N+L ++
Sbjct:    82 LKMEKNELANIMPGAFRNLGSLRHLSLANNKLKNLPVRLFQDVNN-LETLLLSNNQLVQI 140

Query:   154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPAXXXXXXXX 212
                  S+  NL++L+L  N +  I EG F+    LT+L+L  N    +            
Sbjct:   141 QPAQFSQFSNLKELQLYGNNLEYIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQ 200

Query:   213 XXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
                        +    F  L  L+ L + EN++  + P  F    + L+RL L  N ++ 
Sbjct:   201 VLRLYENRLSDIPMGTFDALGNLQELALQENQIGTLSPGLFHN-NRNLQRLYLSNNHISH 259

Query:   273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
             +P     +L +L KL L  N +  +  G F  + NL  L L +N + ++P   F+HL  L
Sbjct:   260 LPPGIFMQLPHLNKLTLFGNSLKELSPGVFGPMPNLRELWLYNNHITSLPDNAFSHLNQL 319

Query:   333 NSLELDGNHIHTVDPAAFSGL 353
               L L  N +  + P AF+GL
Sbjct:   320 QVLILSHNQLSYISPGAFNGL 340

GO:0005622 "intracellular" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NJ43 NYX "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 244 (91.0 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 92/292 (31%), Positives = 128/292 (43%)

Query:    55 PCQCS---VKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFF 111
             PC+ S   + KN +  L E     +   T+ +LKS        L L HNN+  +T   F 
Sbjct:    54 PCEASSINLDKNSIKFLSE-----RAFGTLPSLKS--------LSLNHNNISFITPGAFK 100

Query:   112 GL-DIRHLTI-HNXXXXXXXXXXXXXIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 169
             GL  +  L + HN             + ++L +L+L    L  +P     +L +L++L  
Sbjct:   101 GLPSLTELKMAHNEYIRYLHTRTFTAL-RRLVKLDLADCNLFNIPDRIFIELPSLQELFC 159

Query:   170 LHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNA 228
               N    I  G   G + LT + L +N +  V   +                   +H  A
Sbjct:   160 FQNNFRRIP-GAIRGMENLTHVYLERNRIEAVAYNSLQGLTKLKYLNLQDNRINVVHERA 218

Query:   229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
             FQG   +E L + +N +S +  +SF GL + LK LNLGGN L  V  T    L  L  L 
Sbjct:   219 FQGCRKMEYLYLNDNLISELPENSFDGL-RCLKMLNLGGNFLRNVSNTWFRDLVELEVLY 277

Query:   289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
             L  NRI  IEEG FE L +L SL L  N L T+P  VF  +  L  L L  N
Sbjct:   278 LDRNRINYIEEGAFENLTSLVSLHLNSNNLTTLPFSVFQPVYFLGRLYLFRN 329

GO:0005622 "intracellular" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

MGI|MGI:1315205 Slit2 "slit homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 49/160 (30%), Positives = 82/160 (51%)

Query:   136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQ 194
             I +  +RL+L GN +TR+ +   + L +LR L+L+ NRI+ IE G F+  K L +L L++
Sbjct:    53 IPRNTERLDLNGNNITRITKIDFAGLRHLRVLQLMENRISTIERGAFQDLKELERLRLNR 112

Query:   195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFK 254
             N+L + P                     A+   AF+G   ++ L +  N++S IE  +F+
Sbjct:   113 NNLQLFPELLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFR 172

Query:   255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
              L + L+ L L  N +TR+   S + +  LR   L  N +
Sbjct:   173 AL-RDLEVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNL 211

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=ISO

GO:0005095 "GTPase inhibitor activity" evidence=ISO

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP;IDA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP;IDA

GO:0008045 "motor neuron axon guidance" evidence=ISO

GO:0008201 "heparin binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009986 "cell surface" evidence=ISO

GO:0010593 "negative regulation of lamellipodium assembly" evidence=ISO

GO:0010596 "negative regulation of endothelial cell migration" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=IGI;IMP

GO:0021772 "olfactory bulb development" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=ISO

GO:0022029 "telencephalon cell migration" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030837 "negative regulation of actin filament polymerization" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO;IGI;IMP

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043116 "negative regulation of vascular permeability" evidence=ISO

GO:0043237 "laminin-1 binding" evidence=ISO

GO:0043394 "proteoglycan binding" evidence=ISO

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISO

GO:0045499 "chemorepellent activity" evidence=IMP

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=IGI;IMP

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO;IMP

GO:0050929 "induction of negative chemotaxis" evidence=ISO

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI;IMP

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

GO:0071504 "cellular response to heparin" evidence=ISO

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=ISO

GO:0071676 "negative regulation of mononuclear cell migration" evidence=ISO

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=ISO

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISO

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=ISO

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

UNIPROTKB|I3LFJ7 NYX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 75/227 (33%), Positives = 107/227 (47%)

Query:    95 LKLRHNNLPKLTGFIFFGLD-IRHLTI-HNXXXXXXXXXXXXXIGKKLKRLNLGGNELTR 152
             L LRHNNL  +T   F GL  +  L + HN             +G+ L+RL+L    L  
Sbjct:    87 LSLRHNNLSFITPGAFKGLPRLAELRLAHNGDLRYLHARTFAALGR-LRRLDLAACRLFS 145

Query:   153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPAXXXXXXX 211
             VP+  L++L  LR+L    N    +  G   G A LT   L ++ +  V S +       
Sbjct:   146 VPERLLAELPALRELAAFDNLFRRVP-GALRGLANLTHAHLERSRIEAVASSSLLGLRRL 204

Query:   212 XXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
                         +H  AF+   +LE L + +N L+ +  D+F GL + L+ LNLGGN L 
Sbjct:   205 RSLSLQANRVRTVHGGAFRDCGSLEHLLLNDNLLAALPADAFHGL-RHLRTLNLGGNALG 263

Query:   272 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
             RV +   ++L  L  L L  N IA +EEG F+ L  L +L L  N L
Sbjct:   264 RVARAWFAELAELELLYLDRNSIAFVEEGAFQNLSGLLALHLNGNHL 310

GO:0007601 "visual perception" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q9GZU5 NYX "Nyctalopin" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 5.9e-20, P = 5.9e-20
 Identities = 75/230 (32%), Positives = 108/230 (46%)

Query:    95 LKLRHNNLPKLTGFIFFGLD-IRHLTI-HNXXXXXXXXXXXXXIGKKLKRLNLGGNELTR 152
             L LRHNNL  +T   F GL  +  L + HN             + + L+RL+L    L  
Sbjct:    91 LSLRHNNLSFITPGAFKGLPRLAELRLAHNGDLRYLHARTFAALSR-LRRLDLAACRLFS 149

Query:   153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLAVVPSPAXXXXXXX 211
             VP+  L++L  LR+L    N    +  G   G A LT   L +  +  V S +       
Sbjct:   150 VPERLLAELPALRELAAFDNLFRRVP-GALRGLANLTHAHLERGRIEAVASSSLQGLRRL 208

Query:   212 XXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
                        A+H+ AF     LE L + +N L+ +  D+F+GL ++L+ LNLGGN L 
Sbjct:   209 RSLSLQANRVRAVHAGAFGDCGVLEHLLLNDNLLAELPADAFRGL-RRLRTLNLGGNALD 267

Query:   272 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
             RV +   + L  L  L L  N IA +EEG F+ L  L +L L  N+L  +
Sbjct:   268 RVARAWFADLAELELLYLDRNSIAFVEEGAFQNLSGLLALHLNGNRLTVL 317

GO:0050896 "response to stimulus" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	357
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
           NL+ L+L +NR+ +I +G F+GL NL  L L+ N L +I P  F+ LP L SL+L GN++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 30/270 (11%)

Query: 113 LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
           L+I HL  +N +  +    +L+S+  +L+ L L  N+ +     +L K  NL  L+L  N
Sbjct: 310 LEILHLFSNNFTGKIPV--ALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 173 RIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA-------- 223
            +   I EG      L +L L  NSL      +L +   L  + L  N  S         
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426

Query: 224 --------LHSNAFQG--------LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
                   + +N  QG        + +L++L++  NK     PDSF    K+L+ L+L  
Sbjct: 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSR 484

Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
           N+ +      L  L  L +L+L  N+++     +      L SL L+HNQL    P  F+
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGLEAKV 357
            +P+L+ L+L  N +    P     +E+ V
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 53.3 bits (129), Expect = 1e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
            LK L+L  N LT +P  +   L NL+ L+L  N +  I    F GL +L SL L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 65/214 (30%), Positives = 91/214 (42%), Gaps = 10/214 (4%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
             L  L+L  N +T +P        NL++L+L  N+I  +         L  LDLS N L
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
           + +P       N L  L+L+ NKIS L     + L  LE L +  N +  +         
Sbjct: 176 SDLPKLLSNLSN-LNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIELLSSLSN--L 231

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
           K L  L L  N+L  +P  S+  L NL  L+L +N+I+ I       L NL  L L+ N 
Sbjct: 232 KNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNS 288

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           L    P       LL  LEL  N + T+      
Sbjct: 289 LSNALP---LIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 3/205 (1%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQ-LDLSQNSLA 198
           L +L L  N L      SL    +LR++ L  N  +     +F    L   LD+S N+L 
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
              +     +  L +L+L  NK      ++F G   LE L +  N+ S   P     L +
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
            L +L L  N+L+      LS  + L  L+L HN+++      F  +  L  L L+ NQL
Sbjct: 501 -LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 319 RTIPPRVFAHLPLLNSLELDGNHIH 343
               P+   ++  L  + +  NH+H
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLH 584

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
            LK L+L  N LT +P  +   L NL+ L+L  N +  I    F G  +L  LDLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
           L+ L +  N+L++I   +FKGL   LK L+L GN LT +   + S L +LR L+L  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGL-PNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
           L  LDLS N L V+P  A K L +L +L+L+ N ++++   AF GL +L  L +  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 7e-07
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
           +L  L+L++N+++ +   AF+GL  L++L +  N L+ I P++F GL   L+ L+L GN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL-PSLRSLDLSGNN 59

Query: 270 L 270
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           NL SL L++N+L  IP   F  LP L  L+L GN++ ++ P AFSGL +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPS 49

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 163 NLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI 221
           NL+ L+L +NR+ +I +G F+G   L  LDLS N+L  +   A   L  L  L+L+ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
           ++ L + N+ L V+ + +       LK L+L GN LT +   + S L +LR L+L  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
           L  LDL+ N L    S  L  L +L  L+L++N I+ +          L+ L + +NK+ 
Sbjct: 95  LPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            +           LK L+L  N+L+ +P   LS L NL  L+L  N+I+ +   + E L 
Sbjct: 154 SLPSP--LRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPP-EIELLS 209

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
            L+ L L++N +  +     ++L  L+ LEL  N
Sbjct: 210 ALEELDLSNNSIIELLS-SLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 10/254 (3%)

Query: 104 KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT-RVPQTSLSKLE 162
           K++  IF    I+ + + N+ L+      + +    L+ LNL  N  T  +P+ S+  LE
Sbjct: 84  KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE 143

Query: 163 NLRKLELLHNRIA---LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN 219
            L   +L +N ++     + G F   +L  LDL  N L      +L +L  L  L L  N
Sbjct: 144 TL---DLSNNMLSGEIPNDIGSFS--SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS 279
           ++          + +L+ + +  N LS   P    GL   L  L+L  N LT    +SL 
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPSSLG 257

Query: 280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
            L+NL+ L L  N+++         L  L SL L+ N L    P +   L  L  L L  
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 340 NHIHTVDPAAFSGL 353
           N+     P A + L
Sbjct: 318 NNFTGKIPVALTSL 331

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 44/256 (17%)

Query: 94  YLKLRHNNL--PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
           YL L +NN       G I   L+   L+ +  S  +  +    S    LK L+LGGN L 
Sbjct: 122 YLNLSNNNFTGSIPRGSIP-NLETLDLSNNMLSGEIPNDIGSFS---SLKVLDLGGNVLV 177

Query: 152 RVPQTSLSKLENLRKLELLHNRIA---LIEEGDFEGKALTQLDLSQNSLA-VVPSP--AL 205
                SL+ L +L  L L  N++      E G    K+L  + L  N+L+  +P     L
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM--KSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
            SLNHL   +L +N ++    ++   L  L+ L +++NKLS   P S   L +KL  L+L
Sbjct: 236 TSLNHL---DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDL 291

Query: 266 GGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPR 324
             N L+  +P+     +  L+ LE+LH                     L  N      P 
Sbjct: 292 SDNSLSGEIPEL----VIQLQNLEILH---------------------LFSNNFTGKIPV 326

Query: 325 VFAHLPLLNSLELDGN 340
               LP L  L+L  N
Sbjct: 327 ALTSLPRLQVLQLWSN 342

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 36/219 (16%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193
           + I +++  L L  NEL  +P+       N++ L    N++  I         + +++LS
Sbjct: 195 ACIPEQITTLILDNNELKSLPENLQG---NIKTLYANSNQLTSIPAT--LPDTIQEMELS 249

Query: 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEI---------------- 237
            N +  +P     +L  L    L HNKIS L  N  + L  L +                
Sbjct: 250 INRITELPERLPSALQSLD---LFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGI 306

Query: 238 --LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
             L +  N L+ + P++   L   LK L  G N LT +P +   +L+    L++  N+I 
Sbjct: 307 THLNVQSNSLTAL-PET---LPPGLKTLEAGENALTSLPASLPPELQV---LDVSKNQIT 359

Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNS 334
           ++ E     +  LD   ++ N L  +P  + A L ++ +
Sbjct: 360 VLPETLPPTITTLD---VSRNALTNLPENLPAALQIMQA 395

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
           L HL  +NL+ N I      +   + +LE+L +  N  +   P+S  G    L+ LNL G
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNG 499

Query: 268 NELT-RVP 274
           N L+ RVP
Sbjct: 500 NSLSGRVP 507

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG4237|consensus	498		99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG4237|consensus	498		99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG0444|consensus	1255		99.89
KOG0444|consensus	1255		99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.87
KOG0472|consensus	565		99.86
KOG0472|consensus	565		99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG0618|consensus	1081		99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG0618|consensus	1081		99.79
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617|consensus	264		99.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
KOG0617|consensus	264		99.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.63
KOG1259|consensus	490		99.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
KOG3207|consensus	505		99.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
KOG0532|consensus	722		99.32
KOG3207|consensus	505		99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
KOG0532|consensus	722		99.29
KOG1259|consensus	490		99.28
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
KOG0531|consensus	414		99.14
KOG0531|consensus	414		99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
KOG1909|consensus	382		99.11
KOG1909|consensus	382		99.01
KOG4658|consensus	889		98.85
PLN03150	623	hypothetical protein; Provisional	98.75
PLN03150	623	hypothetical protein; Provisional	98.72
KOG1859|consensus	1096		98.69
KOG1859|consensus	1096		98.68
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.61
KOG1644|consensus	233		98.61
KOG4579|consensus	177		98.46
KOG4579|consensus	177		98.42
KOG4658|consensus	889		98.4
KOG2982|consensus	418		98.38
KOG1644|consensus	233		98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
KOG2982|consensus	418		98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
PRK15386	426	type III secretion protein GogB; Provisional	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG2120|consensus	419		98.18
KOG2120|consensus	419		98.05
PRK15386	426	type III secretion protein GogB; Provisional	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.94
KOG3665|consensus	699		97.65
KOG3665|consensus	699		97.47
KOG2739|consensus	260		97.43
KOG2123|consensus	388		96.97
KOG2123|consensus	388		96.88
KOG2739|consensus	260		96.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.02
KOG4341|consensus	483		95.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.46
smart00370	26	LRR Leucine-rich repeats, outliers.	95.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.38
smart00370	26	LRR Leucine-rich repeats, outliers.	95.38
KOG4341|consensus	483		95.36
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	94.28
KOG1947|consensus	482		93.78
KOG1947|consensus	482		93.23
KOG3864|consensus	221		93.07
KOG4308|consensus	478		91.99
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	91.82
KOG0473|consensus	326		90.3
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.13
KOG3864|consensus	221		88.78
KOG0473|consensus	326		88.29
KOG4308|consensus	478		87.1
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.43
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.28

>KOG4194|consensus

Probab=100.00  E-value=9.5e-37  Score=273.28  Aligned_cols=296  Identities=27%  Similarity=0.468  Sum_probs=246.9

Q ss_pred             cCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCC
Q psy15002         45 QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS  123 (357)
Q Consensus        45 ~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~  123 (357)
                      ..||.     +|.|...    -.+|...++..+..  ..+.+..|..++.|++++|.+.++....|... +|+.+.+.+|
T Consensus        44 ~~cpa-----~c~c~~~----lldcs~~~lea~~~--~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N  112 (873)
T KOG4194|consen   44 SECPA-----TCPCNTR----LLDCSDRELEAIDK--SRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN  112 (873)
T ss_pred             ccCCC-----cCCCCce----eeecCccccccccc--cccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc
Confidence            48998     7999865    89999999887653  46778888999999999999999999888777 9999999999


Q ss_pred             CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCc
Q psy15002        124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS  202 (357)
Q Consensus       124 ~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~  202 (357)
                      .++.|+..  .+...+|+.|++.+|.|+.+..+.+..++.|+.|||+.|.|++++...|.. .++++|++++|.|+.+..
T Consensus       113 ~Lt~IP~f--~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~  190 (873)
T KOG4194|consen  113 ELTRIPRF--GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET  190 (873)
T ss_pred             hhhhcccc--cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc
Confidence            99988743  333356999999999999999999999999999999999999999888887 899999999999999999


Q ss_pred             cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCC
Q psy15002        203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE  282 (357)
Q Consensus       203 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  282 (357)
                      +.|.++.+|.+|.|+.|+++.++...|+.+++|+.|+|..|+|..+....|.++ ++++.|.+..|++..+..+.|..+.
T Consensus       191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~  269 (873)
T KOG4194|consen  191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLE  269 (873)
T ss_pred             ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc-hhhhhhhhhhcCcccccCcceeeec
Confidence            999999999999999999999999999989999999999998887766677777 6777777777777777777777777


Q ss_pred             CCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       283 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      ++++|+|+.|+++.+..+++-++++|+.|+|++|.|..+....+..+++|+.|+|++|.++..++++|..+.
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            777777777777777776666777777777777777777766666677777777777777777777766554

>KOG4194|consensus

Probab=100.00  E-value=1.1e-35  Score=266.48  Aligned_cols=261  Identities=30%  Similarity=0.483  Sum_probs=172.3

Q ss_pred             eEEEEEecCCCCcCccccccCC-CcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         91 IIFYLKLRHNNLPKLTGFIFFG-LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        91 ~l~~L~l~~~~i~~l~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      .++.|||+.|.|++++...|.. .++++|++++|+|+.+..+.|.++ .+|..|.++.|.++.++...|.++++|+.|+|
T Consensus       150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccccCHHHhhhcchhhhhhc
Confidence            3445566666666666666655 377888888888888877777777 36778888888888777777777777777777


Q ss_pred             cCCccccccCCCCCC-C------------------------CCCeEECCCCCCeeeCccccCCCCcCceeecccccCccc
Q psy15002        170 LHNRIALIEEGDFEG-K------------------------ALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL  224 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~-~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  224 (357)
                      ..|+|..+....|.. +                        ++++|+++.|+++.+..+.+.++.+|+.|++++|.|..+
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            777665443333333 3                        444444444444444444444555555555555555555


Q ss_pred             CcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC---cCc
Q psy15002        225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE---EGD  301 (357)
Q Consensus       225 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~  301 (357)
                      ..+.+...++|++|+|+.|+++.++++.|..+ .+|++|+|+.|.++.+...+|..+++|++|+|++|.+....   ...
T Consensus       309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~  387 (873)
T KOG4194|consen  309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA  387 (873)
T ss_pred             ecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence            55555555555555555555555555555555 55566666666655555556666666677777777666543   245


Q ss_pred             CCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002        302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       302 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      |.++++|+.|+|.+|+++.|+..+|.+++.|+.|||.+|.|..|.+++|..+
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            6677888888888888888888888888888888888888888888888776

>KOG4237|consensus

Probab=99.97  E-value=2e-33  Score=241.24  Aligned_cols=285  Identities=24%  Similarity=0.429  Sum_probs=211.0

Q ss_pred             ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecC
Q psy15002         44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHN  122 (357)
Q Consensus        44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~  122 (357)
                      +..||.     ||.|...+ +..|+|.+.++++||..+       |.++..|.|..|.|+.||+.+|..+ +|++|++++
T Consensus        34 ~~~CP~-----pC~Cs~~~-g~~VdCr~~GL~eVP~~L-------P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~  100 (498)
T KOG4237|consen   34 ASACPA-----PCTCSDVE-GGIVDCRGKGLTEVPANL-------PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK  100 (498)
T ss_pred             cccCCC-----CcccCCCC-CceEEccCCCcccCcccC-------CCcceEEEeccCCcccCChhhccchhhhceecccc
Confidence            558999     89999877 889999999999999776       7999999999999999999999998 899999999


Q ss_pred             CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeC
Q psy15002        123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP  201 (357)
Q Consensus       123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~  201 (357)
                      |.|+.|.+++|.++..-++.++.++|+|+.++.+.|.++..|+.|.+.-|.+..++..++.- +++..|.+.+|.+..+.
T Consensus       101 N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~  180 (498)
T KOG4237|consen  101 NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC  180 (498)
T ss_pred             cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence            99999999999999664555566669999999999999999999999999999888777655 88999999999999999


Q ss_pred             ccccCCCCcCceeecccccCc------------ccCcccCCCCCCCCEEEccCCcCcccCC-------------------
Q psy15002        202 SPALKSLNHLLILNLNHNKIS------------ALHSNAFQGLDTLEILTIFENKLSLIEP-------------------  250 (357)
Q Consensus       202 ~~~~~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~-------------------  250 (357)
                      ...|..+.+++.+.+..|.+.            ...+-.+++.....-..+.+.++..+..                   
T Consensus       181 ~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~  260 (498)
T KOG4237|consen  181 KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF  260 (498)
T ss_pred             cccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC
Confidence            889999999999988877521            1112222333333333333333333322                   


Q ss_pred             -------CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002        251 -------DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       251 -------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                             ..|..+ ++|+.|++++|+++.+.+.+|....++++|.|..|++..+...+|.++..|++|+|.+|+|+.+.+
T Consensus       261 ~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  261 PDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             cCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence                   234444 556666666666666666666666666666666666666665566666666666666666666666


Q ss_pred             ccCCCCCCCcEEeCCCCcc
Q psy15002        324 RVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       324 ~~~~~~~~L~~L~L~~N~l  342 (357)
                      .+|..+..|..|+|-.|+|
T Consensus       340 ~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccccccceeeeeehccCcc
Confidence            6666666666666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=5.8e-28  Score=247.28  Aligned_cols=259  Identities=25%  Similarity=0.263  Sum_probs=157.3

Q ss_pred             ceEEEEEecCCCCc-CccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002         90 LIIFYLKLRHNNLP-KLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        90 ~~l~~L~l~~~~i~-~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  167 (357)
                      +.++.|++++|.+. .+|...|... +|++|++++|.+....+..  .+ ++|++|++++|.+.+..+..++++++|++|
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SI-PNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc--cc-CCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            56788999999887 7888877444 8888888888876543321  12 457777777777776555567777777777


Q ss_pred             eccCCccc-cccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002        168 ELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS  246 (357)
Q Consensus       168 ~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  246 (357)
                      ++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            77777765 45555555577777777777766555556666666666666666666555555666666666666666665


Q ss_pred             ccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccC
Q psy15002        247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF  326 (357)
Q Consensus       247 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  326 (357)
                      +..+..+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+
T Consensus       250 ~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        250 GPIPSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             cccChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            5445555555 556666666655554433444555555555555555554444444445555555555555544444334


Q ss_pred             CCCCCCcEEeCCCCcccccCcccccC
Q psy15002        327 AHLPLLNSLELDGNHIHTVDPAAFSG  352 (357)
Q Consensus       327 ~~~~~L~~L~L~~N~l~~~~~~~~~~  352 (357)
                      ..+++|+.|++++|.+++..|..++.
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhC
Confidence            44444444444444444444443333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=6.6e-27  Score=239.55  Aligned_cols=258  Identities=26%  Similarity=0.285  Sum_probs=156.7

Q ss_pred             ceEEEEEecCCCCcC-ccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPK-LTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..+++|++++|++.. +|...  ..+|++|++++|.+....+..+..+ ++|++|++++|.+.+..+..+.++++|++|+
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~--l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             CCCCEEECcCCccccccCccc--cCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCcccccCChhhhhCcCCCeee
Confidence            567788888887763 33321  2367777777777766555556555 5577777777777665555677777777777


Q ss_pred             ccCCccc-cccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        169 LLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       169 l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      +++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            7777765 345555555677777777776665555566666677777777666665555566666666666666666655


Q ss_pred             cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCC
Q psy15002        248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA  327 (357)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  327 (357)
                      ..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus       275 ~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        275 PIPPSIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             cCchhHhhc-cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence            545555554 5666666666666554444455555666666666655554444455555555555555555543333344


Q ss_pred             CCCCCcEEeCCCCcccccCccccc
Q psy15002        328 HLPLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       328 ~~~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                      .+++|+.|++++|.+++..|+.++
T Consensus       354 ~~~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             CCCCCcEEECCCCeeEeeCChhHh
Confidence            455555555555555544444433

>KOG4237|consensus

Probab=99.90  E-value=3.2e-26  Score=197.10  Aligned_cols=259  Identities=29%  Similarity=0.460  Sum_probs=217.9

Q ss_pred             EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccC-C
Q psy15002         94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH-N  172 (357)
Q Consensus        94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n  172 (357)
                      .++-++..++++|.+.-.  ..+.+.+..|.|+.+++.+|..+ ++|+.||||+|+|+.|.+++|.++++|..|-+.+ |
T Consensus        50 ~VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccch-hhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            567778888888887654  45899999999999999999999 6799999999999999999999999998887766 9


Q ss_pred             ccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc-----
Q psy15002        173 RIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS-----  246 (357)
Q Consensus       173 ~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----  246 (357)
                      +|+.+|.++|.. ..++.|.+.-|++..+..++|..++++..|.+.+|.+..+....|..+.+++.+.+..|.+-     
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            999999999988 88999999999999999999999999999999999999998889999999999999888721     


Q ss_pred             -------ccCCCcccccc---------------------ccccEE----EccCCcCcccCcccccCCCCCcEEEccCCcC
Q psy15002        247 -------LIEPDSFKGLE---------------------KKLKRL----NLGGNELTRVPQTSLSKLENLRKLELLHNRI  294 (357)
Q Consensus       247 -------~~~~~~~~~~~---------------------~~L~~L----~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  294 (357)
                             ...+..+++.-                     ..++.+    .-..+....-|...|..+++|++|++++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                   11111222110                     011111    1112222233445688999999999999999


Q ss_pred             ceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCccc
Q psy15002        295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA  355 (357)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  355 (357)
                      +.+..++|.+..++++|.|..|++..+...+|.++..|+.|+|.+|+|+.+.|.+|..+..
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            9999999999999999999999999999999999999999999999999999999977654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=3.3e-23  Score=200.05  Aligned_cols=246  Identities=24%  Similarity=0.304  Sum_probs=162.9

Q ss_pred             eEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEE
Q psy15002         65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLN  144 (357)
Q Consensus        65 ~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~  144 (357)
                      ..++|...+++.+|..+       +..++.|++.+|+++.+|..   ..+|++|++++|.++.++.     .+++|+.|+
T Consensus       204 ~~LdLs~~~LtsLP~~l-------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~-----lp~sL~~L~  268 (788)
T PRK15387        204 AVLNVGESGLTTLPDCL-------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV-----LPPGLLELS  268 (788)
T ss_pred             cEEEcCCCCCCcCCcch-------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC-----cccccceee
Confidence            37888888888888654       34678888888888888753   2478888888888887753     124577777


Q ss_pred             ccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccC-----------------C
Q psy15002        145 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALK-----------------S  207 (357)
Q Consensus       145 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----------------~  207 (357)
                      +++|.++.++..    +.+|+.|++++|.++.+|..   .++|+.|++++|+++.++.. ..                 .
T Consensus       269 Ls~N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~l  340 (788)
T PRK15387        269 IFSNPLTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPTL  340 (788)
T ss_pred             ccCCchhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-cccccccccccCcccccccc
Confidence            777766665431    23455566666666555542   24556666666655554320 00                 0


Q ss_pred             CCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEE
Q psy15002        208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL  287 (357)
Q Consensus       208 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  287 (357)
                      ..+|+.|++++|+++.++..    .++|+.|++++|+++.++.     .+.+|+.|++++|.++.++..    .++|+.|
T Consensus       341 p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~-----l~~~L~~LdLs~N~Lt~LP~l----~s~L~~L  407 (788)
T PRK15387        341 PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLPVL----PSELKEL  407 (788)
T ss_pred             ccccceEecCCCccCCCCCC----CcccceehhhccccccCcc-----cccccceEEecCCcccCCCCc----ccCCCEE
Confidence            12566666666666655321    2355666666666665432     124678888888888876642    2578888


Q ss_pred             EccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCccccc
Q psy15002        288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       288 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                      ++++|.++.+|..    ..+|+.|++++|+|+.+|.. +.++++|+.|+|++|+|++..+..+.
T Consensus       408 dLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        408 MVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             EccCCcCCCCCcc----hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHHH
Confidence            8888888887642    35788899999999988765 46788999999999999987766653

>KOG0444|consensus

Probab=99.89  E-value=1.9e-25  Score=202.78  Aligned_cols=257  Identities=25%  Similarity=0.360  Sum_probs=147.3

Q ss_pred             eEEEEEecCCCCc--CccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         91 IIFYLKLRHNNLP--KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        91 ~l~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      .++.+++.+|++.  .+|.++|..-.|+.|++++|.++..+...-.  .+++.+|++|+|+|..||...|.++..|-+||
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~--AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEY--AKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhh--hcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            3444555555553  4555666555666666666665554432211  14455666666666666665566666666666


Q ss_pred             ccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCc-ccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS-ALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      |++|++..+|+.+..+..|++|++++|.+....-..+..+.+|++|.+++.+=+ .-.|.++..+.+|..+|++.|.+..
T Consensus       157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~  236 (1255)
T KOG0444|consen  157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI  236 (1255)
T ss_pred             cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence            666666666666555566666666666555544444444555555555554311 1223445556666666666666665


Q ss_pred             cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc--ccCccc
Q psy15002        248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR--TIPPRV  325 (357)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~  325 (357)
                      + |+.+..+ .+|+.|++++|+++.+.. ......+|++|+++.|+++.+|. +++.+++|+.|++.+|++.  ++|..+
T Consensus       237 v-Pecly~l-~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  237 V-PECLYKL-RNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPSGI  312 (1255)
T ss_pred             c-hHHHhhh-hhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCccch
Confidence            5 4444444 566666666666666553 24445666666677776666655 4555666777777777655  565543


Q ss_pred             CCCCCCCcEEeCCCCcccccCcccccCccc
Q psy15002        326 FAHLPLLNSLELDGNHIHTVDPAAFSGLEA  355 (357)
Q Consensus       326 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  355 (357)
                       +.+.+|+.+..++|.+.-+ |+.++.+.+
T Consensus       313 -GKL~~Levf~aanN~LElV-PEglcRC~k  340 (1255)
T KOG0444|consen  313 -GKLIQLEVFHAANNKLELV-PEGLCRCVK  340 (1255)
T ss_pred             -hhhhhhHHHHhhccccccC-chhhhhhHH
Confidence             6666677777776666554 355555543

>KOG0444|consensus

Probab=99.89  E-value=1.4e-25  Score=203.61  Aligned_cols=248  Identities=24%  Similarity=0.344  Sum_probs=169.0

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..++.|||++|.+.+.|...-...++-.|.+++|.|.+|+...|.++ +.|-.||+|+|.+..+||. +..+.+|+.|+|
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL-tDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL-TDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKL  180 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh-HhHhhhccccchhhhcCHH-HHHHhhhhhhhc
Confidence            45667777777777777776666677777777777777777777766 4577777777777777775 677777777777


Q ss_pred             cCCcccccc-CCCCCCCCCCeEECCCCCCe--eeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002        170 LHNRIALIE-EGDFEGKALTQLDLSQNSLA--VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS  246 (357)
Q Consensus       170 ~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  246 (357)
                      ++|.+.... ..+-.+.+|++|.+++.+-+  .+|. .+..+.+|..++++.|.+..+ |+.+..+++|+.|+|++|.|+
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCcee
Confidence            777654211 11223356777777765432  3443 566677777777777777666 556677777777777777777


Q ss_pred             ccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc--eeCcCcCCCCCCCCEeecCCCcCcccCcc
Q psy15002        247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA--LIEEGDFEGLHNLDSLVLAHNQLRTIPPR  324 (357)
Q Consensus       247 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  324 (357)
                      .+... .... .++++|+++.|+++.+|. ++..++.|+.|++.+|+++  ++|. .++.+.+|+.+.+++|++.-.|..
T Consensus       259 eL~~~-~~~W-~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aanN~LElVPEg  334 (1255)
T KOG0444|consen  259 ELNMT-EGEW-ENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAANNKLELVPEG  334 (1255)
T ss_pred             eeecc-HHHH-hhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhccccccCchh
Confidence            76432 2222 567777777777777763 5677777777777777654  4444 456677777777777777666654


Q ss_pred             cCCCCCCCcEEeCCCCcccccC
Q psy15002        325 VFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       325 ~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                       +..|..|+.|.|+.|.+-++|
T Consensus       335 -lcRC~kL~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  335 -LCRCVKLQKLKLDHNRLITLP  355 (1255)
T ss_pred             -hhhhHHHHHhcccccceeech
Confidence             366777777777777776664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.87  E-value=4.4e-22  Score=193.27  Aligned_cols=245  Identities=22%  Similarity=0.313  Sum_probs=193.1

Q ss_pred             eEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEE
Q psy15002         65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLN  144 (357)
Q Consensus        65 ~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~  144 (357)
                      ....+...+++.+|..+       +..++.|++++|.++.+|...+.  +|+.|++++|.++.++..    ++.+|+.|+
T Consensus       181 ~~L~L~~~~LtsLP~~I-------p~~L~~L~Ls~N~LtsLP~~l~~--nL~~L~Ls~N~LtsLP~~----l~~~L~~L~  247 (754)
T PRK15370        181 TELRLKILGLTTIPACI-------PEQITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIPAT----LPDTIQEME  247 (754)
T ss_pred             eEEEeCCCCcCcCCccc-------ccCCcEEEecCCCCCcCChhhcc--CCCEEECCCCccccCChh----hhccccEEE
Confidence            35555666777766533       46788999999999999987663  789999999999887643    235799999


Q ss_pred             ccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCccc
Q psy15002        145 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL  224 (357)
Q Consensus       145 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  224 (357)
                      +++|.+..++.. +  ..+|++|++++|.++.+|..+.  ++|++|++++|+++.++...   .++|+.|++++|.+..+
T Consensus       248 Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        248 LSINRITELPER-L--PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             CcCCccCcCChh-H--hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc---hhhHHHHHhcCCccccC
Confidence            999999988765 3  2579999999999999887664  58999999999999877532   24789999999999877


Q ss_pred             CcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCC
Q psy15002        225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG  304 (357)
Q Consensus       225 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  304 (357)
                      +.. +  .++|+.|++++|.++.++. .+   +++|+.|++++|+++.+|.. +.  +.|+.|++++|+++.+|+..   
T Consensus       320 P~~-l--~~sL~~L~Ls~N~Lt~LP~-~l---~~sL~~L~Ls~N~L~~LP~~-lp--~~L~~LdLs~N~Lt~LP~~l---  386 (754)
T PRK15370        320 PET-L--PPGLKTLEAGENALTSLPA-SL---PPELQVLDVSKNQITVLPET-LP--PTITTLDVSRNALTNLPENL---  386 (754)
T ss_pred             Ccc-c--cccceeccccCCccccCCh-hh---cCcccEEECCCCCCCcCChh-hc--CCcCEEECCCCcCCCCCHhH---
Confidence            543 2  2689999999999988743 22   26899999999999987753 32  68999999999999987743   


Q ss_pred             CCCCCEeecCCCcCcccCcc---cCCCCCCCcEEeCCCCccc
Q psy15002        305 LHNLDSLVLAHNQLRTIPPR---VFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       305 ~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~N~l~  343 (357)
                      ...|+.|++++|++..+|..   .+...+.+..+++.+|+++
T Consensus       387 ~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            24799999999999988753   3345688899999999985

>KOG0472|consensus

Probab=99.86  E-value=3e-25  Score=191.59  Aligned_cols=251  Identities=27%  Similarity=0.431  Sum_probs=181.3

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..+.++++++|.+.++|+.+.....++.+..++|++..++......  .+++.+++++|.+..++++ ++.+-.|..++.
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~--~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~  144 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSL--ISLVKLDCSSNELKELPDS-IGRLLDLEDLDA  144 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhh--hhhhhhhccccceeecCch-HHHHhhhhhhhc
Confidence            3455677777777777776666666677777777766665443332  3477777777777777654 666777777777


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccC
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE  249 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (357)
                      .+|.++.+|++.+...++..+++.+|+++..++..+. +..|+.++...|-++.+++ .++++.+|+.|++.+|++..++
T Consensus       145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~lP  222 (565)
T KOG0472|consen  145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRFLP  222 (565)
T ss_pred             cccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhcccccCC
Confidence            7777777777777777777777777777777775554 7778888888887777744 4677788888888888887764


Q ss_pred             CCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002        250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL  329 (357)
Q Consensus       250 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  329 (357)
                        .|.++ +.|++|.++.|++..++.+-...++++..|++..|++++.|.+ +.-+.+|+.||+++|.++++|.. ++++
T Consensus       223 --ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp~s-Lgnl  297 (565)
T KOG0472|consen  223 --EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLPYS-LGNL  297 (565)
T ss_pred             --CCCcc-HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCCcc-cccc
Confidence              56666 6788888888888877776666778888888888888887764 34467788888888888888765 3666


Q ss_pred             CCCcEEeCCCCcccccCccccc
Q psy15002        330 PLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                       .|++|-+.||+++++..+.+.
T Consensus       298 -hL~~L~leGNPlrTiRr~ii~  318 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRREIIS  318 (565)
T ss_pred             -eeeehhhcCCchHHHHHHHHc
Confidence             788888888888777655443

>KOG0472|consensus

Probab=99.86  E-value=4e-25  Score=190.86  Aligned_cols=253  Identities=26%  Similarity=0.375  Sum_probs=225.4

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..+..+.+++|.++.+..+......++.+.+.+|.+...++.. ..+ ..++.++.++|++..+++. +..+.+|..+++
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l-~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GEL-EALKSLNVSHNKLSELPEQ-IGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHH-HHHHHhhcccchHhhccHH-Hhhhhhhhhhhc
Confidence            5677899999999999998888779999999999998887543 333 5699999999999999875 788999999999


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccC
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE  249 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (357)
                      +.|.+.+++++++..-.++.++..+|++++.++ .+..+.++..+++.+|++...+++... ++.|++||...|-++.+ 
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-  198 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETL-  198 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcC-
Confidence            999999999999999999999999999999987 566778899999999999999887665 89999999999999988 


Q ss_pred             CCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002        250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL  329 (357)
Q Consensus       250 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  329 (357)
                      |..++++ .+|+.|++..|++..+|  .|.++..|++|+++.|+|+-++++..++++++..|||+.|++++.|.++ .-+
T Consensus       199 P~~lg~l-~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-clL  274 (565)
T KOG0472|consen  199 PPELGGL-ESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLL  274 (565)
T ss_pred             Chhhcch-hhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH-HHh
Confidence            5567777 89999999999999998  4999999999999999999999988889999999999999999999876 567


Q ss_pred             CCCcEEeCCCCcccccCcccccCc
Q psy15002        330 PLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      .+|..||+++|.+++.++. ++++
T Consensus       275 rsL~rLDlSNN~is~Lp~s-Lgnl  297 (565)
T KOG0472|consen  275 RSLERLDLSNNDISSLPYS-LGNL  297 (565)
T ss_pred             hhhhhhcccCCccccCCcc-cccc
Confidence            8899999999999999754 3554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.6e-20  Score=181.58  Aligned_cols=229  Identities=22%  Similarity=0.289  Sum_probs=156.9

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..-..|+++++.++.+|.....  +++.|.+.+|.++.++.     .+++|++|++++|+++.++.    ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccC----cccccceeec
Confidence            4456899999999999986653  78999999999998764     23689999999999999874    2578999999


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccC
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE  249 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (357)
                      ++|.++.+|...   .+|+.|++++|+++.++.    .+++|+.|++++|++..++. .   ..+|+.|++++|+++.++
T Consensus       270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        270 FSNPLTHLPALP---SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             cCCchhhhhhch---hhcCEEECcCCccccccc----cccccceeECCCCccccCCC-C---cccccccccccCcccccc
Confidence            999999888632   679999999999998875    34789999999999988743 1   124555555555555442


Q ss_pred             CCccccccccccEEEccCCcCcccCccccc-----------------CCCCCcEEEccCCcCceeCcCcCCCCCCCCEee
Q psy15002        250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLS-----------------KLENLRKLELLHNRIALIEEGDFEGLHNLDSLV  312 (357)
Q Consensus       250 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  312 (357)
                      .     .+.+|+.|++++|+++.+|.. ..                 ...+|+.|++++|+++.++..    .++|+.|+
T Consensus       339 ~-----lp~~Lq~LdLS~N~Ls~LP~l-p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~Ld  408 (788)
T PRK15387        339 T-----LPSGLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELM  408 (788)
T ss_pred             c-----cccccceEecCCCccCCCCCC-CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEE
Confidence            1     113455555555555554421 00                 113456666666666655431    34566677


Q ss_pred             cCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCccc
Q psy15002        313 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA  355 (357)
Q Consensus       313 L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  355 (357)
                      +++|+++.+|..    ..+|+.|++++|.++.++ +.|+++..
T Consensus       409 LS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP-~sl~~L~~  446 (788)
T PRK15387        409 VSGNRLTSLPML----PSGLLSLSVYRNQLTRLP-ESLIHLSS  446 (788)
T ss_pred             ccCCcCCCCCcc----hhhhhhhhhccCcccccC-hHHhhccC
Confidence            777776666542    235667777777777664 34555443

>KOG0618|consensus

Probab=99.85  E-value=8.9e-24  Score=199.37  Aligned_cols=260  Identities=26%  Similarity=0.355  Sum_probs=213.6

Q ss_pred             CCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002         88 SGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        88 ~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  167 (357)
                      .|..++++++++|++..+|.+.....+|+.+...+|++..++...+..  .+|+.|++..|.+..+++. ..++++|++|
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~--~~L~~l~~~~nel~yip~~-le~~~sL~tL  315 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI--TSLVSLSAAYNELEYIPPF-LEGLKSLRTL  315 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh--hhHHHHHhhhhhhhhCCCc-ccccceeeee
Confidence            457888899999999999977777778999999999887776554443  5688899999999888874 6778899999


Q ss_pred             eccCCccccccCCCCCC--CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcC
Q psy15002        168 ELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL  245 (357)
Q Consensus       168 ~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  245 (357)
                      +|..|.+..+|+..+.-  ..++.++.+.|++...+...-..++.|+.|++.+|+++.-....+-+.++|+.|+|++|++
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            99999998888866554  3477788888888777754444567899999999999877667788899999999999999


Q ss_pred             cccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002        246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV  325 (357)
Q Consensus       246 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  325 (357)
                      ..++...+.++ ..|+.|+++||+++.++ .++..++.|++|...+|++...|  .+..++.|+.+|++.|.++.+.-..
T Consensus       396 ~~fpas~~~kl-e~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  396 NSFPASKLRKL-EELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             ccCCHHHHhch-HHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhh
Confidence            99988888888 89999999999999999 56888999999999999999998  4667999999999999999543221


Q ss_pred             CCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        326 FAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       326 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      ...-++|++||++||.....+.+.|..++
T Consensus       472 ~~p~p~LkyLdlSGN~~l~~d~~~l~~l~  500 (1081)
T KOG0618|consen  472 ALPSPNLKYLDLSGNTRLVFDHKTLKVLK  500 (1081)
T ss_pred             hCCCcccceeeccCCcccccchhhhHHhh
Confidence            12228999999999998777776666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1.8e-20  Score=182.09  Aligned_cols=228  Identities=26%  Similarity=0.369  Sum_probs=186.0

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      .....|+++++.++.+|....  ..++.|++++|.++.++...+    .+|++|++++|.++.++.. +  .++|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPAT-L--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccccCChh-h--hccccEEEC
Confidence            456789999999999987643  378999999999998875433    4799999999999998764 3  347999999


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccC
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE  249 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (357)
                      ++|.++.+|..+.  .+|++|++++|+++.++.. +  .++|+.|++++|+++.++.. +.  ++|+.|++++|.++.++
T Consensus       249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        249 SINRITELPERLP--SALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTALP  320 (754)
T ss_pred             cCCccCcCChhHh--CCCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCccc-ch--hhHHHHHhcCCccccCC
Confidence            9999999987664  5799999999999988753 2  25899999999999987543 32  47999999999999874


Q ss_pred             CCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002        250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL  329 (357)
Q Consensus       250 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  329 (357)
                      ...    +++|+.|++++|.++.++.. +.  ++|+.|++++|+++.+|.. +  .++|+.|++++|+|+.+|+...   
T Consensus       321 ~~l----~~sL~~L~Ls~N~Lt~LP~~-l~--~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~---  387 (754)
T PRK15370        321 ETL----PPGLKTLEAGENALTSLPAS-LP--PELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPENLP---  387 (754)
T ss_pred             ccc----cccceeccccCCccccCChh-hc--CcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCHhHH---
Confidence            322    26899999999999998743 33  7999999999999988753 3  4789999999999999987543   


Q ss_pred             CCCcEEeCCCCcccccCc
Q psy15002        330 PLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~  347 (357)
                      ..|+.|++++|++++++.
T Consensus       388 ~sL~~LdLs~N~L~~LP~  405 (754)
T PRK15370        388 AALQIMQASRNNLVRLPE  405 (754)
T ss_pred             HHHHHHhhccCCcccCch
Confidence            368999999999998754

>KOG0618|consensus

Probab=99.79  E-value=8.7e-22  Score=186.07  Aligned_cols=244  Identities=27%  Similarity=0.376  Sum_probs=184.7

Q ss_pred             eEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002         91 IIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  170 (357)
Q Consensus        91 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  170 (357)
                      .++.|....|.+..+   ...+.+++.|+..+|.++.+......   .+|+++++++|.++.++ +.+..+.+|+.++..
T Consensus       200 ~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~~p~p---~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  200 NLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDVHPVP---LNLQYLDISHNNLSNLP-EWIGACANLEALNAN  272 (1081)
T ss_pred             chhhhhhhhcccceE---EecCcchheeeeccCcceeecccccc---ccceeeecchhhhhcch-HHHHhcccceEeccc
Confidence            344455545544433   23455778888888887755443333   57888888888888887 557788888888888


Q ss_pred             CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccC---------------------
Q psy15002        171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF---------------------  229 (357)
Q Consensus       171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---------------------  229 (357)
                      +|.++.+|..++...+|+.|.+..|.+..+++ ...++..|++|++..|.+...++..+                     
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp  351 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP  351 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence            88888888877777777777777777777775 44556777777777777665543222                     


Q ss_pred             ----CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCC
Q psy15002        230 ----QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL  305 (357)
Q Consensus       230 ----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  305 (357)
                          ..++.|+.|.+.+|.++.---..+... .+|+.|+|++|+++.+|...+.+++.|++|+|+||+++.++. .+..+
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~  429 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANL  429 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhh
Confidence                123567777888888776544455555 789999999999999999889999999999999999999984 66778


Q ss_pred             CCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccC
Q psy15002        306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       306 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                      ..|++|...+|++...|.  +.+++.|+.+|++.|+++.+.
T Consensus       430 ~~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLLSFPE--LAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             hhhHHHhhcCCceeechh--hhhcCcceEEecccchhhhhh
Confidence            999999999999999994  678999999999999998753

>PLN03210 Resistant to P

Probab=99.70  E-value=1.1e-15  Score=158.19  Aligned_cols=124  Identities=23%  Similarity=0.303  Sum_probs=76.6

Q ss_pred             CceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCc-CceeChhhhcCCCCCcEE
Q psy15002         89 GLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE-LTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        89 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L  167 (357)
                      +..++.|.+.++.+..+|... ...+|+.|++.++.+..+... +..+ ++|++|+++++. +..++.  +..+++|++|
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~~~l-~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L  662 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG-VHSL-TGLRNIDLRGSKNLKEIPD--LSMATNLETL  662 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc-cccC-CCCCEEECCCCCCcCcCCc--cccCCcccEE
Confidence            356788888888888887653 344777888887777766443 2333 457777777653 444542  5666777777


Q ss_pred             eccCCc-cccccCCCCCCCCCCeEECCCC-CCeeeCccccCCCCcCceeecccc
Q psy15002        168 ELLHNR-IALIEEGDFEGKALTQLDLSQN-SLAVVPSPALKSLNHLLILNLNHN  219 (357)
Q Consensus       168 ~l~~n~-l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  219 (357)
                      ++++|. +..+|..+..+++|+.|++++| .+..++...  ++++|+.|++++|
T Consensus       663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence            776653 5566666666667777777664 344444321  4455555555554

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=6e-18  Score=152.06  Aligned_cols=249  Identities=25%  Similarity=0.245  Sum_probs=147.1

Q ss_pred             EEEEEecCCCCcC-----ccccccCCCcccEEEecCCCcceec------CcccccccccceEEEccCCcCceeChhhhcC
Q psy15002         92 IFYLKLRHNNLPK-----LTGFIFFGLDIRHLTIHNSSLAVVE------ESSLSSIGKKLKRLNLGGNELTRVPQTSLSK  160 (357)
Q Consensus        92 l~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~~~------~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~  160 (357)
                      ++.|+++++.++.     ++........++++.++++.+....      ...+... .+|++|++++|.+....+..+..
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHHH
Confidence            7788888888743     3333333335778888777665311      1122232 46888888888877544444544


Q ss_pred             CCC---CcEEeccCCccc-----cccCCCCCC-CCCCeEECCCCCCeeeC----ccccCCCCcCceeecccccCcccC--
Q psy15002        161 LEN---LRKLELLHNRIA-----LIEEGDFEG-KALTQLDLSQNSLAVVP----SPALKSLNHLLILNLNHNKISALH--  225 (357)
Q Consensus       161 l~~---L~~L~l~~n~l~-----~~~~~~~~~-~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~--  225 (357)
                      +.+   |++|++++|.++     .+...+... ++|+.|++++|.++...    ...+..+++|++|++++|.++...  
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            444   888888888776     222233344 67788888888776321    123455667888888887776321  


Q ss_pred             --cccCCCCCCCCEEEccCCcCcccCCC----ccccccccccEEEccCCcCcccCccccc-----CCCCCcEEEccCCcC
Q psy15002        226 --SNAFQGLDTLEILTIFENKLSLIEPD----SFKGLEKKLKRLNLGGNELTRVPQTSLS-----KLENLRKLELLHNRI  294 (357)
Q Consensus       226 --~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l  294 (357)
                        ...+...++|+.|++++|.++.....    .+... ++|+.|++++|.++......+.     ..+.|++|++++|.+
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              22334456788888888777644322    22233 5678888888777642221111     236777888887777


Q ss_pred             ceeCc----CcCCCCCCCCEeecCCCcCcccCc----ccCCCC-CCCcEEeCCCCcc
Q psy15002        295 ALIEE----GDFEGLHNLDSLVLAHNQLRTIPP----RVFAHL-PLLNSLELDGNHI  342 (357)
Q Consensus       295 ~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~~-~~L~~L~L~~N~l  342 (357)
                      +....    ..+..+++|+.+++++|.+...+.    ..+... +.|+.+++.+|+|
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            53211    123345677788888887774432    222333 5777777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.67  E-value=9.1e-19  Score=135.12  Aligned_cols=185  Identities=29%  Similarity=0.451  Sum_probs=150.1

Q ss_pred             hcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCE
Q psy15002        158 LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEI  237 (357)
Q Consensus       158 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  237 (357)
                      +-++.+++.|.+++|+++.+|+.+..+.+|+.|++++|+++.++. .++.+++|+.|+++-|++... |..|+.+|.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl~~l-prgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRLNIL-PRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhhhcC-ccccCCCchhhh
Confidence            456778889999999999999999999999999999999999986 688899999999999998766 677999999999


Q ss_pred             EEccCCcCccc-CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCC
Q psy15002        238 LTIFENKLSLI-EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN  316 (357)
Q Consensus       238 L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  316 (357)
                      ||+.+|++.+- -|+.|-.+ ..|..|.+++|.+.-+|++ ++.+.+|+.|.+..|.+-++|. .++.+..|++|.+.+|
T Consensus       107 ldltynnl~e~~lpgnff~m-~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchhHH-HHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcccc
Confidence            99999988653 24445455 6788899999999888864 7888999999999998888876 4667888999999999


Q ss_pred             cCcccCcccCCCC---CCCcEEeCCCCcccccCcc
Q psy15002        317 QLRTIPPRVFAHL---PLLNSLELDGNHIHTVDPA  348 (357)
Q Consensus       317 ~l~~~~~~~~~~~---~~L~~L~L~~N~l~~~~~~  348 (357)
                      +++-+||.. +++   .+-+.+.+.+|+|-.-+.+
T Consensus       184 rl~vlppel-~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  184 RLTVLPPEL-ANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             eeeecChhh-hhhhhhhhHHHHhhhhCCCCChHHH
Confidence            999888854 322   3345566777776554433

>PLN03210 Resistant to P

Probab=99.66  E-value=7.6e-15  Score=151.91  Aligned_cols=148  Identities=20%  Similarity=0.298  Sum_probs=67.9

Q ss_pred             ccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-cccccCCCCCCCCCCeEECC
Q psy15002        115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       115 L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~  193 (357)
                      |+.|.+.++.+..++....   +.+|++|++++|.+..++.. +..+++|++|+++++. ++.+|. +...++|++|+++
T Consensus       591 Lr~L~~~~~~l~~lP~~f~---~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~  665 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNFR---PENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS  665 (1153)
T ss_pred             cEEEEecCCCCCCCCCcCC---ccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence            4444444444444432221   13455555555555544332 3455555555555432 334432 3333555555555


Q ss_pred             CCCC-eeeCccccCCCCcCceeecccc-cCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCc
Q psy15002        194 QNSL-AVVPSPALKSLNHLLILNLNHN-KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT  271 (357)
Q Consensus       194 ~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  271 (357)
                      +|.. ..++ ..+..+++|+.|++++| .+..++. .+ ++++|+.|++++|......+    ....+|+.|++++|.+.
T Consensus       666 ~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        666 DCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAIE  738 (1153)
T ss_pred             CCCCccccc-hhhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCccc
Confidence            5432 2222 34555555666666554 2333322 11 45566666666653211111    11145566666666655


Q ss_pred             ccC
Q psy15002        272 RVP  274 (357)
Q Consensus       272 ~~~  274 (357)
                      .+|
T Consensus       739 ~lP  741 (1153)
T PLN03210        739 EFP  741 (1153)
T ss_pred             ccc
Confidence            544

syringae 6; Provisional

>KOG0617|consensus

Probab=99.65  E-value=8.5e-19  Score=135.29  Aligned_cols=158  Identities=28%  Similarity=0.445  Sum_probs=139.8

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      ..++.|.+|+|+++.++++ +..+.+|+.|++.+|+++++|..+..+++|+.|+++-|++...+ ..|+.+|.|+.|++.
T Consensus        33 s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp-rgfgs~p~levldlt  110 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP-RGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc-cccCCCchhhhhhcc
Confidence            4689999999999999987 89999999999999999999999999999999999999987666 479999999999999


Q ss_pred             cccCcc-cCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002        218 HNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL  296 (357)
Q Consensus       218 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  296 (357)
                      +|.+.. ..|+-|..+..|+.|.+++|.+..+ |...+.+ ++|+.|.+.+|.+-++|. .++.+..|++|++.+|.++.
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~l-t~lqil~lrdndll~lpk-eig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKL-TNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcccC-Chhhhhh-cceeEEeeccCchhhCcH-HHHHHHHHHHHhcccceeee
Confidence            998863 3356677788999999999999877 5566777 899999999999998885 48888999999999999999


Q ss_pred             eCcC
Q psy15002        297 IEEG  300 (357)
Q Consensus       297 ~~~~  300 (357)
                      +|++
T Consensus       188 lppe  191 (264)
T KOG0617|consen  188 LPPE  191 (264)
T ss_pred             cChh
Confidence            9873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.63  E-value=1.1e-17  Score=150.24  Aligned_cols=255  Identities=24%  Similarity=0.217  Sum_probs=173.6

Q ss_pred             EEEecCCCCcCcc-ccccCCC-cccEEEecCCCcceecCccccc---ccccceEEEccCCcCce------eChhhhcCCC
Q psy15002         94 YLKLRHNNLPKLT-GFIFFGL-DIRHLTIHNSSLAVVEESSLSS---IGKKLKRLNLGGNELTR------VPQTSLSKLE  162 (357)
Q Consensus        94 ~L~l~~~~i~~l~-~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~---l~~~L~~L~ls~n~l~~------~~~~~~~~l~  162 (357)
                      .|+|..+.++.-. ...+... +++.|.++++.++......+..   ..+++++|+++++.+..      .....+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3566666665211 2222222 6999999999885432222221   11459999999998773      1224577789


Q ss_pred             CCcEEeccCCcccccc-CCCCCC---CCCCeEECCCCCCeeeC----ccccCCC-CcCceeecccccCccc----CcccC
Q psy15002        163 NLRKLELLHNRIALIE-EGDFEG---KALTQLDLSQNSLAVVP----SPALKSL-NHLLILNLNHNKISAL----HSNAF  229 (357)
Q Consensus       163 ~L~~L~l~~n~l~~~~-~~~~~~---~~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l  229 (357)
                      +|++|++++|.+.... ..+...   ++|++|++++|.+....    ...+..+ ++|+.|++++|.++..    ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999999986322 222222   45999999999987422    1234556 8999999999998732    13345


Q ss_pred             CCCCCCCEEEccCCcCcccCC----CccccccccccEEEccCCcCcccCc----ccccCCCCCcEEEccCCcCceeCcCc
Q psy15002        230 QGLDTLEILTIFENKLSLIEP----DSFKGLEKKLKRLNLGGNELTRVPQ----TSLSKLENLRKLELLHNRIALIEEGD  301 (357)
Q Consensus       230 ~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~  301 (357)
                      ..+++|+.|++++|.++....    ..+... ++|+.|++++|.++....    ..+..+++|++|++++|.+++.....
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            677899999999999875321    223333 589999999999875432    24567889999999999988632222


Q ss_pred             C-----CCCCCCCEeecCCCcCcccC----cccCCCCCCCcEEeCCCCcccccCccc
Q psy15002        302 F-----EGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHTVDPAA  349 (357)
Q Consensus       302 ~-----~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~N~l~~~~~~~  349 (357)
                      +     ...+.|+.|++++|.+++..    ...+..+++|+.+++++|.+++-+...
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~  297 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL  297 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence            2     12479999999999997211    123456689999999999998765443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259|consensus

Probab=99.44  E-value=1.3e-14  Score=121.88  Aligned_cols=201  Identities=21%  Similarity=0.248  Sum_probs=137.6

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCC-CeeeCccccCCCCcCceeec
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS-LAVVPSPALKSLNHLLILNL  216 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  216 (357)
                      ++|+.+.+|.+.-..|-.- ...-|.|+.+.+.+..++..|.-+- ...+.-.....-. ...........+..|+++++
T Consensus       214 ~~l~~~~~s~~~~~~i~~~-~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL  291 (490)
T KOG1259|consen  214 RNLKTLKFSALSTENIVDI-ELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQELTELDL  291 (490)
T ss_pred             hhhheeeeeccchhheece-eecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence            5678888887765544321 2234667777777665554332211 1111111111100 01100112233457889999


Q ss_pred             ccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002        217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL  296 (357)
Q Consensus       217 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  296 (357)
                      ++|.|+.+ .++..-.|.++.|++++|++..+..  +..+ ++|+.||+++|.++.+. ++-..+.++++|.+++|.+.+
T Consensus       292 S~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La~L-~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  292 SGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LAEL-PQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             cccchhhh-hhhhhhccceeEEeccccceeeehh--hhhc-ccceEeecccchhHhhh-hhHhhhcCEeeeehhhhhHhh
Confidence            99998887 5567778899999999999988754  5666 78999999999988876 455678899999999999888


Q ss_pred             eCcCcCCCCCCCCEeecCCCcCcccCc-ccCCCCCCCcEEeCCCCcccccCc
Q psy15002        297 IEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       297 ~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      +..  +..+-+|..||+++|+|..++. ..++++|.|+.+.|.+|+++++..
T Consensus       367 LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  367 LSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            754  5667889999999999987765 346889999999999999988754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=5.3e-13  Score=123.52  Aligned_cols=199  Identities=34%  Similarity=0.442  Sum_probs=111.7

Q ss_pred             EEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCC-CCCeEECCCCCCeeeCccccCCCCcCceeeccccc
Q psy15002        142 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK-ALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK  220 (357)
Q Consensus       142 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  220 (357)
                      .++.+.+.+..-.. .+..++.++.|++.+|.++.+++...... +|+.|++++|++..++ ..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence            35555555422111 13444556666666666666666555553 6666666666666554 134556666666666666


Q ss_pred             CcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcC
Q psy15002        221 ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG  300 (357)
Q Consensus       221 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  300 (357)
                      +..+++. ....+.|+.|++++|++..++... ... ..++++++++|.+...+ ..+..+..+..+.+.+|++..++. 
T Consensus       175 l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~-~~~-~~L~~l~~~~N~~~~~~-~~~~~~~~l~~l~l~~n~~~~~~~-  249 (394)
T COG4886         175 LSDLPKL-LSNLSNLNNLDLSGNKISDLPPEI-ELL-SALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPE-  249 (394)
T ss_pred             hhhhhhh-hhhhhhhhheeccCCccccCchhh-hhh-hhhhhhhhcCCcceecc-hhhhhcccccccccCCceeeeccc-
Confidence            6665432 124566666666666666664321 111 34666666666433333 134555666666666666655422 


Q ss_pred             cCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCccc
Q psy15002        301 DFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA  349 (357)
Q Consensus       301 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~  349 (357)
                      .++.+++++.|++++|+++.++.  +....+++.|++++|.+..+++..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            34455666777777777766666  456666777777776666554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=3.2e-13  Score=108.34  Aligned_cols=105  Identities=31%  Similarity=0.500  Sum_probs=23.1

Q ss_pred             CCCeEECCCCCCeeeCccccC-CCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEE
Q psy15002        186 ALTQLDLSQNSLAVVPSPALK-SLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLN  264 (357)
Q Consensus       186 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  264 (357)
                      ++++|++++|+|+.|..  +. .+.+|+.|++++|.++.+.  .+..+++|++|++++|+++.+.......+ ++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~l-p~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNL-PNLQELY   94 (175)
T ss_dssp             ----------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH--TT--EEE
T ss_pred             ccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhC-CcCCEEE
Confidence            44555555555555432  22 3445555555555555542  24445555555555555554422111122 4455555


Q ss_pred             ccCCcCcccCc-ccccCCCCCcEEEccCCcCc
Q psy15002        265 LGGNELTRVPQ-TSLSKLENLRKLELLHNRIA  295 (357)
Q Consensus       265 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~  295 (357)
                      +++|++..+.. ..+..+++|+.|++.+|.++
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            55555544321 12333444444444444444

>KOG3207|consensus

Probab=99.33  E-value=1.4e-13  Score=121.03  Aligned_cols=86  Identities=27%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             ccccEEEccCCcCcccCcc-cccCCCCCcEEEccCCcCceeCcCcC------CCCCCCCEeecCCCcCcccCc-ccCCCC
Q psy15002        258 KKLKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDF------EGLHNLDSLVLAHNQLRTIPP-RVFAHL  329 (357)
Q Consensus       258 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~-~~~~~~  329 (357)
                      ..|++|||++|.+-..+.. ....++.|+.|+++.+.+.++.....      ..+++|+.|++..|+++.++. ..+..+
T Consensus       246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL  325 (505)
T ss_pred             hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence            3455555555544433311 12344445555555554444322111      223455555555555544443 111223


Q ss_pred             CCCcEEeCCCCccc
Q psy15002        330 PLLNSLELDGNHIH  343 (357)
Q Consensus       330 ~~L~~L~L~~N~l~  343 (357)
                      ++|+.+.+..|.++
T Consensus       326 ~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  326 ENLKHLRITLNYLN  339 (505)
T ss_pred             chhhhhhccccccc
Confidence            44444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=6.9e-13  Score=106.44  Aligned_cols=128  Identities=30%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             cCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEE
Q psy15002        159 SKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEIL  238 (357)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  238 (357)
                      .+..++++|+|++|.|+.+..-...+.+|+.|++++|.++.+.  .+..++.|++|++++|+++.+.......+++|+.|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            3444555566666665555321112355666666666666554  35556667777777777666643222345667777


Q ss_pred             EccCCcCcccCC-CccccccccccEEEccCCcCcccCc---ccccCCCCCcEEEc
Q psy15002        239 TIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQ---TSLSKLENLRKLEL  289 (357)
Q Consensus       239 ~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l  289 (357)
                      ++++|+|..+.. ..+..+ ++|+.|++.+|.++..+.   ..+..+|+|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            777776665533 233444 677777777777665432   12345566666654

>KOG0532|consensus

Probab=99.32  E-value=4.8e-14  Score=127.79  Aligned_cols=197  Identities=23%  Similarity=0.281  Sum_probs=165.3

Q ss_pred             EEEEecCCCCcCccccccCCC--cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002         93 FYLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  170 (357)
Q Consensus        93 ~~L~l~~~~i~~l~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  170 (357)
                      -+|.|++..+...|...+..-  .....+++.|++..++..+...  ..|+.+.+..|.+..++. .+.++..|++|+++
T Consensus        53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f--~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAF--VSLESLILYHNCIRTIPE-AICNLEALTFLDLS  129 (722)
T ss_pred             cccccccchhhcCCCccccccccchhhhhccccccccCchHHHHH--HHHHHHHHHhccceecch-hhhhhhHHHHhhhc
Confidence            367888888888887776521  4578888999998887654332  458999999999999886 48999999999999


Q ss_pred             CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002        171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP  250 (357)
Q Consensus       171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (357)
                      .|+++.+|..++.++ |+.|-+++|+++.++. .++....|..|+.+.|.+..+++ .+.++.+|+.|.+.+|++..+++
T Consensus       130 ~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~  206 (722)
T KOG0532|consen  130 SNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPE  206 (722)
T ss_pred             cchhhcCChhhhcCc-ceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCH
Confidence            999999999988764 8999999999999987 45578899999999999998854 57889999999999999998854


Q ss_pred             CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc
Q psy15002        251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE  299 (357)
Q Consensus       251 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  299 (357)
                       .+..+  .|..||+++|++..+|. .|..|..|++|-|.+|.+++-|+
T Consensus       207 -El~~L--pLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  207 -ELCSL--PLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             -HHhCC--ceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChH
Confidence             44465  59999999999999985 58999999999999999987655

>KOG3207|consensus

Probab=99.31  E-value=3.8e-13  Score=118.43  Aligned_cols=228  Identities=21%  Similarity=0.222  Sum_probs=163.3

Q ss_pred             EEEEEecCCCCcCccccccCC----C-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeCh--hhhcCCCCC
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFG----L-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQ--TSLSKLENL  164 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~----~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~--~~~~~l~~L  164 (357)
                      ...+.+++-.++.+..+....    . +|+.+.+.++.+............++++.||++.|-+....+  .....+|+|
T Consensus        95 ~~~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L  174 (505)
T KOG3207|consen   95 ESVLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL  174 (505)
T ss_pred             hhHhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc
Confidence            345566666666665543322    2 689999999988776643333333689999999998876432  335789999


Q ss_pred             cEEeccCCccccccCCCC--CCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEcc
Q psy15002        165 RKLELLHNRIALIEEGDF--EGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF  241 (357)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  241 (357)
                      +.|+++.|++........  ..+.|+.|.++.|.++.-.. .....+|+|+.|++..|....+......-+..|+.|+|+
T Consensus       175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            999999999875433332  23889999999999984332 234568999999999996444434445556789999999


Q ss_pred             CCcCcccCCC-ccccccccccEEEccCCcCcccCcccc------cCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeec
Q psy15002        242 ENKLSLIEPD-SFKGLEKKLKRLNLGGNELTRVPQTSL------SKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVL  313 (357)
Q Consensus       242 ~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L  313 (357)
                      +|.+-..+.. ..+.+ +.|..|+++.+.+.++.....      ..+++|++|++..|++.+++. ..+..+++|+.|..
T Consensus       255 ~N~li~~~~~~~~~~l-~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTL-PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             CCcccccccccccccc-cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            9998776543 33445 899999999999987643222      457899999999999988754 23444677888888


Q ss_pred             CCCcCcc
Q psy15002        314 AHNQLRT  320 (357)
Q Consensus       314 ~~n~l~~  320 (357)
                      ..|.+..
T Consensus       334 ~~n~ln~  340 (505)
T KOG3207|consen  334 TLNYLNK  340 (505)
T ss_pred             ccccccc
Confidence            8887763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=2.3e-12  Score=119.23  Aligned_cols=172  Identities=35%  Similarity=0.488  Sum_probs=76.5

Q ss_pred             ceEEEccCCcCceeChhhhcCCC-CCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLE-NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      ++.|++.+|.++.+++. ...+. +|+.|++++|.+..++..+...++|+.|++++|++..++.. ....++|+.|++++
T Consensus       118 l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~  195 (394)
T COG4886         118 LTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSG  195 (394)
T ss_pred             eeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccC
Confidence            45555555555554432 22231 45555555555555544444445555555555555544431 11344455555555


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      |++..++.. ......|+++.+++|++... +..+... .++..+.+.+|++..++ ..+..++.+++|++++|.++.++
T Consensus       196 N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~-~~l~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         196 NKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNL-KNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             CccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhc-ccccccccCCceeeecc-chhccccccceeccccccccccc
Confidence            555544332 11222355555555532222 1222222 34444444444444332 22444444555555555555554


Q ss_pred             cCcCCCCCCCCEeecCCCcCc
Q psy15002        299 EGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       299 ~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      .  +....+++.|++++|.+.
T Consensus       272 ~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         272 S--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             c--ccccCccCEEeccCcccc
Confidence            4  344455555555555444

>KOG0532|consensus

Probab=99.29  E-value=9.7e-14  Score=125.86  Aligned_cols=215  Identities=27%  Similarity=0.386  Sum_probs=169.6

Q ss_pred             EEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCC
Q psy15002        117 HLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS  196 (357)
Q Consensus       117 ~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  196 (357)
                      .|.|++-++...+-.++.--.......|++.|.+..++.. +..+..|+.+.+..|.+..+|..+..+..|.+++++.|+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence            4555666666665554442224467889999999998875 677788999999999999999999999999999999999


Q ss_pred             CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcc
Q psy15002        197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT  276 (357)
Q Consensus       197 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  276 (357)
                      ++..+.. +..++ |+.|.+++|+++.++. .++....|..||.+.|.+..+ +..+..+ .+++.|.+..|++..++++
T Consensus       133 lS~lp~~-lC~lp-Lkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~sl-psql~~l-~slr~l~vrRn~l~~lp~E  207 (722)
T KOG0532|consen  133 LSHLPDG-LCDLP-LKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSL-PSQLGYL-TSLRDLNVRRNHLEDLPEE  207 (722)
T ss_pred             hhcCChh-hhcCc-ceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhc-hHHhhhH-HHHHHHHHhhhhhhhCCHH
Confidence            9988863 44455 8999999999998854 466888999999999999887 4455566 7899999999999999875


Q ss_pred             cccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccC--CCCCCCcEEeCCCC
Q psy15002        277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF--AHLPLLNSLELDGN  340 (357)
Q Consensus       277 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~L~~N  340 (357)
                       +..+ .|..|+++.|++..+|. .|.+++.|++|-|.+|.+.+-|..+.  +...-.++|+..-+
T Consensus       208 -l~~L-pLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  208 -LCSL-PLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -HhCC-ceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence             4444 58889999999999987 68889999999999999998776432  23344567776665

>KOG1259|consensus

Probab=99.28  E-value=6e-13  Score=112.03  Aligned_cols=200  Identities=23%  Similarity=0.249  Sum_probs=136.0

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccc--cccCCCCCCCCCCeEE
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA--LIEEGDFEGKALTQLD  191 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~  191 (357)
                      +|+.+.++.+.-..|.+-....  +.|+++.+.+..+...+.  +-....+....-+.-...  .+-..+-....|+++|
T Consensus       215 ~l~~~~~s~~~~~~i~~~~~~k--ptl~t~~v~~s~~~~~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD  290 (490)
T KOG1259|consen  215 NLKTLKFSALSTENIVDIELLK--PTLQTICVHNTTIQDVPS--LLPETILADPSGSEPSTSNGSALVSADTWQELTELD  290 (490)
T ss_pred             hhheeeeeccchhheeceeecC--chhheeeeeccccccccc--ccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence            7788888888766554333222  568899888887765442  222222222111111110  1111112225688888


Q ss_pred             CCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCc
Q psy15002        192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT  271 (357)
Q Consensus       192 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  271 (357)
                      +++|.|+.+.. ...-.|.++.|++++|.+..+..  +..+++|+.|||++|.++.+... -..+ .+++.|.+++|.+.
T Consensus       291 LS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KL-GNIKtL~La~N~iE  365 (490)
T KOG1259|consen  291 LSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKL-GNIKTLKLAQNKIE  365 (490)
T ss_pred             ccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-Hhhh-cCEeeeehhhhhHh
Confidence            88888888775 45566888899999998887743  77788999999999988877432 2234 68889999999888


Q ss_pred             ccCcccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcc
Q psy15002        272 RVPQTSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPR  324 (357)
Q Consensus       272 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~  324 (357)
                      .+.  .+..+.+|..|++.+|+|+.... ..++++|-|+.+.|.+|.+..++.+
T Consensus       366 ~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  366 TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            765  36777888999999999887654 3567788899999999999887753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=2.4e-11  Score=80.44  Aligned_cols=61  Identities=39%  Similarity=0.692  Sum_probs=39.5

Q ss_pred             CCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcc
Q psy15002        282 ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       282 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l  342 (357)
                      |+|++|++++|+++.+++..|.++++|+.|++++|+++.+++..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3556666666666666666666666666666666666666666666666666666666654

...

>KOG0531|consensus

Probab=99.14  E-value=4.1e-12  Score=117.96  Aligned_cols=215  Identities=32%  Similarity=0.429  Sum_probs=137.4

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      .++.+.+..|.+..+.. .+..+ ++|+.|++.+|.|..+... +..+++|++|++++|.|+.+.. +..++.|+.|+++
T Consensus        73 ~l~~l~l~~n~i~~~~~-~l~~~-~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILN-HLSKL-KSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS  148 (414)
T ss_pred             hHHhhccchhhhhhhhc-ccccc-cceeeeeccccchhhcccc-hhhhhcchheeccccccccccc-hhhccchhhheec
Confidence            45556666666665221 12222 5688888888888777542 5667788888888888876643 3333557788888


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCc-ccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR  272 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  272 (357)
                      +|.+..+..  +..+++|+.+++++|.+..+.. . ...+.+++.+++.+|.+..+.....  . ..+..+++..|.++.
T Consensus       149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~--~-~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL--L-KKLVLLSLLDNKISK  222 (414)
T ss_pred             cCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHH--H-HHHHHhhccccccee
Confidence            888877763  4457777888888887777654 2 3566777777888877766543222  1 344555777777766


Q ss_pred             cCcccccCCCC--CcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        273 VPQTSLSKLEN--LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       273 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      +..  +..+..  |+.+++++|.+..++ ..+..+..+..+++..|++.....  +...+.+..+....|++.
T Consensus       223 ~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  223 LEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            553  223333  778888888877764 234456778888888887776654  334455666666666554

>KOG0531|consensus

Probab=99.12  E-value=7.7e-12  Score=116.17  Aligned_cols=245  Identities=31%  Similarity=0.385  Sum_probs=178.1

Q ss_pred             EEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccC
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH  171 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  171 (357)
                      +..++++.|.+..+-...-...+++.+++.+|.+..+... +..+ .+|++|++++|.|+.+..  +..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~-~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSL-VNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhh-hcchheeccccccccccc--hhhccchhhheecc
Confidence            4455677777776433333444789999999999988752 2233 579999999999999875  77888899999999


Q ss_pred             CccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002        172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP  250 (357)
Q Consensus       172 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (357)
                      |.|+.+...-. .+.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..+..  +..+..+..+++..|.++.+.+
T Consensus       150 N~i~~~~~~~~-l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  150 NLISDISGLES-LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             CcchhccCCcc-chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC
Confidence            99998765332 6889999999999998876 2 4677889999999998877643  3444556666888888887744


Q ss_pred             CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc----cCcccC
Q psy15002        251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT----IPPRVF  326 (357)
Q Consensus       251 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~  326 (357)
                      ...... ..|+.+++++|.+...+ ..+..+..+..|++..|.+..+..  +...+.+..+.+..|++..    ......
T Consensus       226 l~~~~~-~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (414)
T KOG0531|consen  226 LNELVM-LHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYIT  301 (414)
T ss_pred             cccchh-HHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccc
Confidence            222111 13889999999988774 236667888899999998887755  3346677777888887662    222224


Q ss_pred             CCCCCCcEEeCCCCcccccCcc
Q psy15002        327 AHLPLLNSLELDGNHIHTVDPA  348 (357)
Q Consensus       327 ~~~~~L~~L~L~~N~l~~~~~~  348 (357)
                      ...+.+..+.+.+|++....+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  302 SAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccccccccccCcccccccc
Confidence            5667888999999988776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=7.9e-11  Score=77.96  Aligned_cols=61  Identities=39%  Similarity=0.588  Sum_probs=50.4

Q ss_pred             ccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcC
Q psy15002        258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL  318 (357)
Q Consensus       258 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  318 (357)
                      ++|+.|++++|+++.+++..|..+++|++|++++|.++.+++.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3678888888888888877888888888888888888888888888888888888888865

...

>KOG1909|consensus

Probab=99.11  E-value=3e-12  Score=109.91  Aligned_cols=241  Identities=22%  Similarity=0.247  Sum_probs=107.3

Q ss_pred             ceEEEEEecCCCCcCc-----cccccCCCcccEEEecCCCcceecC----------cccccccccceEEEccCCcCceeC
Q psy15002         90 LIIFYLKLRHNNLPKL-----TGFIFFGLDIRHLTIHNSSLAVVEE----------SSLSSIGKKLKRLNLGGNELTRVP  154 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l-----~~~~~~~~~L~~L~l~~~~l~~~~~----------~~~~~l~~~L~~L~ls~n~l~~~~  154 (357)
                      ..+++|++++|.+..=     ....-...+|+..++++-.......          .++.+. ++|++|+||+|.+..-.
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC-PKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC-CceeEeeccccccCccc
Confidence            5677888888887542     2222222255666655532222111          111112 25666666666554321


Q ss_pred             h----hhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC----c
Q psy15002        155 Q----TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH----S  226 (357)
Q Consensus       155 ~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~  226 (357)
                      .    ..+..+..|++|.+.+|.+......... ..|..|.         .......-++|+++...+|++..-+    .
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA---------VNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH---------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence            1    1234456666666666655421111100 0000000         0001122344555555555443321    1


Q ss_pred             ccCCCCCCCCEEEccCCcCcccCC----CccccccccccEEEccCCcCcccC----cccccCCCCCcEEEccCCcCceeC
Q psy15002        227 NAFQGLDTLEILTIFENKLSLIEP----DSFKGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       227 ~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      ..|...+.|+.+.++.|+|..-..    ..|... +.|+.||+.+|-++.-.    ..+++.+++|++|++++|.++.-.
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            233344555555555555432111    223333 45555555555554321    123445556666666666555433


Q ss_pred             cCcC-----CCCCCCCEeecCCCcCcccC----cccCCCCCCCcEEeCCCCcc
Q psy15002        299 EGDF-----EGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       299 ~~~~-----~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~N~l  342 (357)
                      ..++     ...++|+.+.+.+|.++.-.    ......-+.|.+|+|++|.+
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3222     22456666666666665211    11122345666666666666

>KOG1909|consensus

Probab=99.01  E-value=4.6e-11  Score=102.68  Aligned_cols=206  Identities=23%  Similarity=0.252  Sum_probs=145.9

Q ss_pred             ccceEEEccCCcCce----eChhhhcCCCCCcEEeccCCcc----ccccCC-------CCCCCCCCeEECCCCCCeeeCc
Q psy15002        138 KKLKRLNLGGNELTR----VPQTSLSKLENLRKLELLHNRI----ALIEEG-------DFEGKALTQLDLSQNSLAVVPS  202 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l----~~~~~~-------~~~~~~L~~L~l~~n~l~~~~~  202 (357)
                      .+++++++|+|.+..    .....+.+.++|+..++++--.    ..+|+.       +...++|++|+||+|.+..-..
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            468888888887764    2223466777888888775421    233332       2223689999999998764332


Q ss_pred             c----ccCCCCcCceeecccccCcccCccc-------------CCCCCCCCEEEccCCcCcccCC----Ccccccccccc
Q psy15002        203 P----ALKSLNHLLILNLNHNKISALHSNA-------------FQGLDTLEILTIFENKLSLIEP----DSFKGLEKKLK  261 (357)
Q Consensus       203 ~----~~~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~  261 (357)
                      .    .++++..|++|.|.+|.+.......             ...-+.|+.+...+|++..-+.    ..|... +.++
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~le  188 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PTLE  188 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc-cccc
Confidence            2    3456788999999999876543222             3445799999999999876543    334444 6899


Q ss_pred             EEEccCCcCcccC----cccccCCCCCcEEEccCCcCceeC----cCcCCCCCCCCEeecCCCcCcccCcc-----cCCC
Q psy15002        262 RLNLGGNELTRVP----QTSLSKLENLRKLELLHNRIALIE----EGDFEGLHNLDSLVLAHNQLRTIPPR-----VFAH  328 (357)
Q Consensus       262 ~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~-----~~~~  328 (357)
                      .+.+..|.+..-.    ...+..+++|+.|++..|-++.-.    ...++.+++|+.|++++|.++.--..     .-..
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            9999999886422    245778999999999999887643    34667789999999999999853332     2234


Q ss_pred             CCCCcEEeCCCCcccc
Q psy15002        329 LPLLNSLELDGNHIHT  344 (357)
Q Consensus       329 ~~~L~~L~L~~N~l~~  344 (357)
                      .|+|+.+++.+|.++.
T Consensus       269 ~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  269 APSLEVLELAGNEITR  284 (382)
T ss_pred             CCCCceeccCcchhHH
Confidence            7899999999998864

>KOG4658|consensus

Probab=98.85  E-value=2.4e-09  Score=106.71  Aligned_cols=128  Identities=25%  Similarity=0.310  Sum_probs=97.7

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCC--cceecCcccccccccceEEEccCC-cCceeChhhhcCCCCCcE
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSS--LAVVEESSLSSIGKKLKRLNLGGN-ELTRVPQTSLSKLENLRK  166 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~l~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~  166 (357)
                      ..++.+.+-+|.+..++...-.. ++++|-+..|.  +..+....|..+ +.|++||+++| .+..+|. .++++-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~-~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPS-SIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCCh-HHhhhhhhhc
Confidence            45677778788877766654433 68888888886  677777777777 56999999976 4556654 5888889999


Q ss_pred             EeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccccc
Q psy15002        167 LELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK  220 (357)
Q Consensus       167 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  220 (357)
                      |+++++.+..+|.++..+..|.+|++..+......++....+.+|++|.+....
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999999999888888889999998876655556666678888888887654

>PLN03150 hypothetical protein; Provisional

Probab=98.75  E-value=1.4e-08  Score=98.87  Aligned_cols=84  Identities=25%  Similarity=0.296  Sum_probs=39.3

Q ss_pred             CCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecC
Q psy15002        235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA  314 (357)
Q Consensus       235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  314 (357)
                      ++.|+|++|.+++..+..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..++++++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3444444444444444444444 445555555554443333334444455555555555444444444444455555555


Q ss_pred             CCcCc
Q psy15002        315 HNQLR  319 (357)
Q Consensus       315 ~n~l~  319 (357)
                      +|+++
T Consensus       499 ~N~l~  503 (623)
T PLN03150        499 GNSLS  503 (623)
T ss_pred             CCccc
Confidence            55444

>PLN03150 hypothetical protein; Provisional

Probab=98.72  E-value=2.7e-08  Score=96.85  Aligned_cols=93  Identities=27%  Similarity=0.364  Sum_probs=65.5

Q ss_pred             ccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCC
Q psy15002        260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG  339 (357)
Q Consensus       260 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  339 (357)
                      ++.|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66777777777765555677777777777777777765555666777777777777777765555567777777777777


Q ss_pred             CcccccCcccccC
Q psy15002        340 NHIHTVDPAAFSG  352 (357)
Q Consensus       340 N~l~~~~~~~~~~  352 (357)
                      |++++..|..+..
T Consensus       500 N~l~g~iP~~l~~  512 (623)
T PLN03150        500 NSLSGRVPAALGG  512 (623)
T ss_pred             CcccccCChHHhh
Confidence            7777766665543

>KOG1859|consensus

Probab=98.69  E-value=2.6e-10  Score=106.78  Aligned_cols=197  Identities=28%  Similarity=0.307  Sum_probs=85.3

Q ss_pred             ccceEEEccCCcCceeC-hhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCC--CeeeC---ccccCC---
Q psy15002        138 KKLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS--LAVVP---SPALKS---  207 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~--l~~~~---~~~~~~---  207 (357)
                      ++++.|.+-...-.+-. +-.+..+.+|++|.+.++.+.+.- ++... .+|++|-..+.-  +.++.   .+.+.+   
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~  162 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV  162 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh
Confidence            45566655544322211 233566788999999998876521 22111 334433322210  00000   000110   


Q ss_pred             CCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEE
Q psy15002        208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL  287 (357)
Q Consensus       208 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  287 (357)
                      ...|...+.++|.+..+ ..++.-++.|+.|+|++|+++..+  .+..+ ++|+.||+++|.+..++.-....+ +|+.|
T Consensus       163 Wn~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L  237 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLRRL-PKLKHLDLSYNCLRHVPQLSMVGC-KLQLL  237 (1096)
T ss_pred             hhhHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHHhc-ccccccccccchhccccccchhhh-hheee
Confidence            12344444455544433 233444445555555555554442  33333 455555555555554442222222 25555


Q ss_pred             EccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc-ccCCCCCCCcEEeCCCCcc
Q psy15002        288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       288 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l  342 (357)
                      .+.+|.++.+..  +.++.+|+.||+++|-|.+... ..+..+..|+.|.|.||++
T Consensus       238 ~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  238 NLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eecccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            555555544432  2334555555555554443221 1123334445555555544

>KOG1859|consensus

Probab=98.68  E-value=4.1e-10  Score=105.47  Aligned_cols=179  Identities=26%  Similarity=0.301  Sum_probs=80.9

Q ss_pred             cccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeC---h---hhhcC---CCCCcEEeccCCcccc
Q psy15002        106 TGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP---Q---TSLSK---LENLRKLELLHNRIAL  176 (357)
Q Consensus       106 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~---~---~~~~~---l~~L~~L~l~~n~l~~  176 (357)
                      |-.+|....|++|.+.++.+....  .+..+-.+|++|..++. +..+.   .   +.+.+   ...|...+.+.|+++.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence            555666667888888888776522  11222234555544332 11110   0   00000   1234455555555555


Q ss_pred             ccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccc
Q psy15002        177 IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL  256 (357)
Q Consensus       177 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  256 (357)
                      +...+--++.++.|+|+.|+++.+.  .+..++.|++||+++|.+..++.-...++ +|+.|.+++|.++.+-  .+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR--GIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh--hHHhh
Confidence            5444444455555555555555443  34455555555555555554432222222 2555555555444331  12233


Q ss_pred             cccccEEEccCCcCcccCc-ccccCCCCCcEEEccCCc
Q psy15002        257 EKKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNR  293 (357)
Q Consensus       257 ~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  293 (357)
                       .+|..||+++|-+.+... ..++.+..|+.|+|.||.
T Consensus       254 -ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  254 -KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             -hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence             344555555554433211 112334444555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.62  E-value=1.8e-07  Score=72.07  Aligned_cols=121  Identities=21%  Similarity=0.382  Sum_probs=42.1

Q ss_pred             cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCC
Q psy15002        228 AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN  307 (357)
Q Consensus       228 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  307 (357)
                      +|.++++|+.+.+.. .+..+....|... ++++.+.+.++ +..+....|..+++++.+.+.+ .+..++...|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            334444444444432 3334444444433 34444444432 4444444444444445555433 444444444444555


Q ss_pred             CCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCccc
Q psy15002        308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA  355 (357)
Q Consensus       308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  355 (357)
                      |+.+++..+ +..++...|.++ .++.+.+.+ .++.++...|.++++
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            555555443 444444445544 555555543 444555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.61  E-value=2.2e-07  Score=71.54  Aligned_cols=127  Identities=20%  Similarity=0.366  Sum_probs=62.3

Q ss_pred             eCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002        200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS  279 (357)
Q Consensus       200 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  279 (357)
                      ++..+|.+..+|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+....|... ..++.+.+.+ .+..++...|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~-~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC-KSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT--TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecc-cccccccccc-ccccccccccc
Confidence            4445666666666666664 456666666666666777776664 666666666665 4677777754 55555555666


Q ss_pred             CCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCc
Q psy15002        280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN  333 (357)
Q Consensus       280 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  333 (357)
                      .+++++.+.+..+ ++.+....|.+. +|+.+.+.. .+..++...|.++++|+
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            6777777777654 667766677665 777777665 56666666676666553

>KOG1644|consensus

Probab=98.61  E-value=5.1e-08  Score=78.06  Aligned_cols=106  Identities=25%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCc-cccCCCCcCceee
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS-PALKSLNHLLILN  215 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  215 (357)
                      .+...+|+++|.+..++.  |..++.|.+|.+.+|+|+.|.+.+... ++|..|.+.+|.+..+.. ..+..+|.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            568888999998888764  788889999999999999888887766 778888888888876543 3466778888888


Q ss_pred             cccccCcccCc---ccCCCCCCCCEEEccCCcC
Q psy15002        216 LNHNKISALHS---NAFQGLDTLEILTIFENKL  245 (357)
Q Consensus       216 l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l  245 (357)
                      +-+|..+....   ..+..+|+|+.||.++-..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            88887765432   2345678888888876543

>KOG4579|consensus

Probab=98.46  E-value=5.2e-09  Score=78.42  Aligned_cols=135  Identities=21%  Similarity=0.220  Sum_probs=98.3

Q ss_pred             cCceeecccccCcccCc--ccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEE
Q psy15002        210 HLLILNLNHNKISALHS--NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL  287 (357)
Q Consensus       210 ~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  287 (357)
                      .+..++|+.+.+..+..  ..+.....|+.++|++|.++.+++ .|...++.++.|++++|.+.++|.+ +..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhc
Confidence            45667888887765522  233445678888999999998854 4444446889999999999999976 8889999999


Q ss_pred             EccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcc
Q psy15002        288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA  348 (357)
Q Consensus       288 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~  348 (357)
                      +++.|.+...+...+. +.++..|+..+|.+..++-..+.. ......++.+++|.+-.+.
T Consensus       106 Nl~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcc
Confidence            9999999888764444 788889999999998888765432 2333445566777665443

>KOG4579|consensus

Probab=98.42  E-value=5.3e-09  Score=78.40  Aligned_cols=86  Identities=26%  Similarity=0.347  Sum_probs=38.2

Q ss_pred             ccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCC
Q psy15002        260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG  339 (357)
Q Consensus       260 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  339 (357)
                      |+..++++|.+..+++......+.++.|++++|.++++|.+ +..++.|+.|+++.|.+...|..++. +.++..|+..+
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~~  132 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSPE  132 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHH-HHhHHHhcCCC
Confidence            34444444444444443333334444444444444444443 44444444444444444444433322 44444444444


Q ss_pred             CcccccCc
Q psy15002        340 NHIHTVDP  347 (357)
Q Consensus       340 N~l~~~~~  347 (357)
                      |.+..++.
T Consensus       133 na~~eid~  140 (177)
T KOG4579|consen  133 NARAEIDV  140 (177)
T ss_pred             CccccCcH
Confidence            44444433

>KOG4658|consensus

Probab=98.40  E-value=2.5e-07  Score=92.54  Aligned_cols=127  Identities=26%  Similarity=0.324  Sum_probs=108.0

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCc--CceeChhhhcCCCCCcEEeccCC-ccccccCCCCCCCCCCeE
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE--LTRVPQTSLSKLENLRKLELLHN-RIALIEEGDFEGKALTQL  190 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~L~~L  190 (357)
                      .++++.+-++.+..+....-.   ++|+.|-+..|.  +..++.+.|..++.|++||+++| .+..+|..+..+-+|++|
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~---~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSEN---PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhccCCCCC---CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            678899999988877665444   469999999996  88898888999999999999976 478999999999999999


Q ss_pred             ECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCc
Q psy15002        191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK  244 (357)
Q Consensus       191 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  244 (357)
                      +++++.+..+|. .+..+..|.+|++..+.-....++....+.+|++|.+....
T Consensus       601 ~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            999999998886 68889999999999886555556777779999999987654

>KOG2982|consensus

Probab=98.38  E-value=7.9e-08  Score=81.47  Aligned_cols=222  Identities=19%  Similarity=0.207  Sum_probs=139.0

Q ss_pred             ccEEEecCCCcceecC-cccccccccceEEEccCCcCceeCh--hhhcCCCCCcEEeccCCccccccCCC-CCCCCCCeE
Q psy15002        115 IRHLTIHNSSLAVVEE-SSLSSIGKKLKRLNLGGNELTRVPQ--TSLSKLENLRKLELLHNRIALIEEGD-FEGKALTQL  190 (357)
Q Consensus       115 L~~L~l~~~~l~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L  190 (357)
                      +.-+.+.++.|..+.+ ..+....+.++++|+.+|.|+....  ..+.++|.|+.|+++.|.+....... ....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            3455666666665543 2344444679999999999886332  34688999999999999987544433 455789999


Q ss_pred             ECCCCCCeeeCc-cccCCCCcCceeecccccCcccC--cccCCC-CCCCCEEEccCCcCccc-CCCccccccccccEEEc
Q psy15002        191 DLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALH--SNAFQG-LDTLEILTIFENKLSLI-EPDSFKGLEKKLKRLNL  265 (357)
Q Consensus       191 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~-l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l  265 (357)
                      -+.+..+..-.. ..+..+|.++.|.++.|.+..+.  .+.... -+.++++...+|....- ....+....+++..+-+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            998887754332 24556788888888888554321  111111 13556666666542211 11122233367788888


Q ss_pred             cCCcCcccCc-ccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCc------ccCCCCCCCcEEe
Q psy15002        266 GGNELTRVPQ-TSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPP------RVFAHLPLLNSLE  336 (357)
Q Consensus       266 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~------~~~~~~~~L~~L~  336 (357)
                      ..|.+.+... ..+...+.+.-|+|+.|+|.++.. +++.+++.|..|.++++.+.+-..      -.++.+++++.|+
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            8887765432 234556677788888888887643 467778888888888887764221      1234556666654

>KOG1644|consensus

Probab=98.32  E-value=1.1e-06  Score=70.43  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=8.1

Q ss_pred             CCCCCCCEEEccCCcCccc
Q psy15002        230 QGLDTLEILTIFENKLSLI  248 (357)
Q Consensus       230 ~~l~~L~~L~L~~n~l~~~  248 (357)
                      ..++.|.+|.+++|+|+.+
T Consensus        61 p~l~rL~tLll~nNrIt~I   79 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRI   79 (233)
T ss_pred             CCccccceEEecCCcceee
Confidence            3344444444444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=6.3e-07  Score=54.37  Aligned_cols=38  Identities=39%  Similarity=0.739  Sum_probs=21.0

Q ss_pred             CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      +|++|++++|+|+.+++. ++++++|+.|++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            455666666666665542 35566666666666666554

...

>KOG2982|consensus

Probab=98.27  E-value=2.3e-07  Score=78.74  Aligned_cols=208  Identities=19%  Similarity=0.178  Sum_probs=139.0

Q ss_pred             cceEEEccCCcCceeChh-hh-cCCCCCcEEeccCCccc---cccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCce
Q psy15002        139 KLKRLNLGGNELTRVPQT-SL-SKLENLRKLELLHNRIA---LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI  213 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~-~~-~~l~~L~~L~l~~n~l~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  213 (357)
                      .++.|.+.++.|..+... .| .....++.+||.+|.|+   +|..-+-.+|.|++|+++.|++.......-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            356777777777765432 22 34578999999999886   45555556699999999999887544322235568899


Q ss_pred             eecccccCcccC-cccCCCCCCCCEEEccCCcCccc--CCCccccccccccEEEccCCcCcccCc--ccccCCCCCcEEE
Q psy15002        214 LNLNHNKISALH-SNAFQGLDTLEILTIFENKLSLI--EPDSFKGLEKKLKRLNLGGNELTRVPQ--TSLSKLENLRKLE  288 (357)
Q Consensus       214 L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~  288 (357)
                      |.+.+.++.... ...+..+|.++.|.++.|.+..+  +.+......+.+.+|....|...-...  ..-..+|++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            998887765322 22346678888888888855433  222222222456666666664432110  1112357888888


Q ss_pred             ccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCc-ccCCCCCCCcEEeCCCCcccccC
Q psy15002        289 LLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       289 l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                      +..|.+.+... ..+..++.+.-|.|+.|+|-++.. ..+..++.|.-|.+++|++.+.-
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            99998877643 445567888899999999987665 44678899999999999887643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=9.9e-07  Score=53.52  Aligned_cols=39  Identities=41%  Similarity=0.618  Sum_probs=28.1

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccccc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  178 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  178 (357)
                      +|++|++++|+|+.+++ .+.++++|++|++++|.++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            57788888888887765 3778888888888888777654

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.22  E-value=7.2e-06  Score=74.26  Aligned_cols=133  Identities=17%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccC-CccccccCCCCCCCCCCeEECCCC-CCeeeCccccCCCCcCceee
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH-NRIALIEEGDFEGKALTQLDLSQN-SLAVVPSPALKSLNHLLILN  215 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  215 (357)
                      .+++.|++++|.++.+|.    -..+|++|.+++ +.++.+|..+.  ++|++|++++| .+..++       ++|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-------cccceEE
Confidence            457888888887777761    234688888876 44555554331  46777777776 444333       2466666


Q ss_pred             cccccCcccCcccCCCC-CCCCEEEccCCc-CcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCc
Q psy15002        216 LNHNKISALHSNAFQGL-DTLEILTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR  293 (357)
Q Consensus       216 l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  293 (357)
                      +..+....+     ..+ ++|+.|.+.+++ .......  ..+|++|+.|++++|.....+. .+.  .+|+.|.++.+.
T Consensus       119 L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~LP~-~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDSI-----KNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNIILPE-KLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCccc-----ccCcchHhheeccccccccccccc--cccCCcccEEEecCCCcccCcc-ccc--ccCcEEEecccc
Confidence            665544322     122 256666664322 1110000  1233567777777666554432 122  466677766553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=4e-07  Score=76.35  Aligned_cols=17  Identities=35%  Similarity=0.454  Sum_probs=8.8

Q ss_pred             hcCCCCCcEEeccCCcc
Q psy15002        158 LSKLENLRKLELLHNRI  174 (357)
Q Consensus       158 ~~~l~~L~~L~l~~n~l  174 (357)
                      +-++|+|+..++|.|.+
T Consensus        88 Llkcp~l~~v~LSDNAf  104 (388)
T COG5238          88 LLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HhcCCcceeeecccccc
Confidence            34455555555555544

>KOG2120|consensus

Probab=98.18  E-value=2.6e-08  Score=84.32  Aligned_cols=223  Identities=18%  Similarity=0.108  Sum_probs=120.5

Q ss_pred             EEEEEecCCCCcCccccccCCCcccEEEecCCCcceec-CcccccccccceEEEccCCcCceeC-hhhhcCCCCCcEEec
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVE-ESSLSSIGKKLKRLNLGGNELTRVP-QTSLSKLENLRKLEL  169 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l  169 (357)
                      -+.+|+.+-+|............+..+.+....+.... ...+.-....|++||+|...|+.-. ...+..+.+|+.|.+
T Consensus       138 W~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl  217 (419)
T KOG2120|consen  138 WQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL  217 (419)
T ss_pred             eeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence            35677777666543333222223333433332222110 0111111145888888888777421 233577788888888


Q ss_pred             cCCccc-cccCCCCCCCCCCeEECCCC-CCeeeCc-cccCCCCcCceeecccccCcccCcc-cCCC-CCCCCEEEccCCc
Q psy15002        170 LHNRIA-LIEEGDFEGKALTQLDLSQN-SLAVVPS-PALKSLNHLLILNLNHNKISALHSN-AFQG-LDTLEILTIFENK  244 (357)
Q Consensus       170 ~~n~l~-~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~-l~~L~~L~L~~n~  244 (357)
                      .++++. .+-..+....+|+.|+++.+ .++.... -.+.++..|..|++++|.+..-... .+.+ -++|+.|++++.+
T Consensus       218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR  297 (419)
T ss_pred             cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence            888876 33334445577888888864 4544332 2356677888888888866432111 1111 1467777777763


Q ss_pred             Cc--ccCCCccccccccccEEEccCCc-CcccCcccccCCCCCcEEEccCCcCceeCcC---cCCCCCCCCEeecCCC
Q psy15002        245 LS--LIEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKLENLRKLELLHNRIALIEEG---DFEGLHNLDSLVLAHN  316 (357)
Q Consensus       245 l~--~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n  316 (357)
                      -.  .-....+..-.+++..||+++|. ++.-....+.+++.|++|.++.|.  .+++.   .+...|+|.+||..++
T Consensus       298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            21  11112222222677888887753 333223345667777777777764  23332   2345677777777654

>KOG2120|consensus

Probab=98.05  E-value=4.5e-08  Score=82.94  Aligned_cols=177  Identities=20%  Similarity=0.150  Sum_probs=118.5

Q ss_pred             CCCcEEeccCCccc--cccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccccc-CcccCc-ccCCCCCCCCE
Q psy15002        162 ENLRKLELLHNRIA--LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK-ISALHS-NAFQGLDTLEI  237 (357)
Q Consensus       162 ~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~  237 (357)
                      ..|++|||++..|+  ++...+....+|+.|.+.++++.+-....+..-.+|+.++++.+. ++.... -.+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35888999988876  333334455788999999998887555567777889999998863 332211 13467789999


Q ss_pred             EEccCCcCcccCC-CccccccccccEEEccCCcC--cccC-cccccCCCCCcEEEccCCc-CceeCcCcCCCCCCCCEee
Q psy15002        238 LTIFENKLSLIEP-DSFKGLEKKLKRLNLGGNEL--TRVP-QTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLV  312 (357)
Q Consensus       238 L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l--~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~  312 (357)
                      |+++++.+..-.. ....+..++++.|+++|..-  ..-. ......+++|.+|+|+.+. ++.-....|-.++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9999998754322 22233336889999988632  1111 1223578999999999874 3332223455688999999


Q ss_pred             cCCCcCcccCcc---cCCCCCCCcEEeCCCC
Q psy15002        313 LAHNQLRTIPPR---VFAHLPLLNSLELDGN  340 (357)
Q Consensus       313 L~~n~l~~~~~~---~~~~~~~L~~L~L~~N  340 (357)
                      ++.|..  ++|.   .+...|.|.+||+-|+
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            988753  4443   2466789999998876

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=6.3e-05  Score=68.27  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=36.8

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCC-cceecCcccccccccceEEEccCC-cCceeChhhhcCCCCCcEE
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSS-LAVVEESSLSSIGKKLKRLNLGGN-ELTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L  167 (357)
                      ..++.|++++|.++.+|.  + ..+|++|.+.++. ++.++ +   .++.+|++|++++| .+..++.       +|+.|
T Consensus        52 ~~l~~L~Is~c~L~sLP~--L-P~sLtsL~Lsnc~nLtsLP-~---~LP~nLe~L~Ls~Cs~L~sLP~-------sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV--L-PNELTEITIENCNNLTTLP-G---SIPEGLEKLTVCHCPEISGLPE-------SVRSL  117 (426)
T ss_pred             cCCCEEEeCCCCCcccCC--C-CCCCcEEEccCCCCcccCC-c---hhhhhhhheEccCccccccccc-------ccceE
Confidence            445677777777777762  1 1256677666532 33322 1   12245666666666 4443332       35555


Q ss_pred             eccCCc
Q psy15002        168 ELLHNR  173 (357)
Q Consensus       168 ~l~~n~  173 (357)
                      ++..+.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.94  E-value=2.3e-06  Score=71.82  Aligned_cols=206  Identities=20%  Similarity=0.230  Sum_probs=145.8

Q ss_pred             ccceEEEccCCcCceeCh----hhhcCCCCCcEEeccCCcc-----------ccccCCCCCCCCCCeEECCCCCCeeeCc
Q psy15002        138 KKLKRLNLGGNELTRVPQ----TSLSKLENLRKLELLHNRI-----------ALIEEGDFEGKALTQLDLSQNSLAVVPS  202 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l-----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~  202 (357)
                      ..++.+++|+|.|..-..    ..+.+-.+|+..+++.--.           ..+.+.+..+|.|+.++++.|.+..-.+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            579999999999885322    3356678888888876432           2233334455999999999998864322


Q ss_pred             ----cccCCCCcCceeecccccCcccCcccC-------------CCCCCCCEEEccCCcCcccCCC----cccccccccc
Q psy15002        203 ----PALKSLNHLLILNLNHNKISALHSNAF-------------QGLDTLEILTIFENKLSLIEPD----SFKGLEKKLK  261 (357)
Q Consensus       203 ----~~~~~l~~L~~L~l~~n~l~~~~~~~l-------------~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~~L~  261 (357)
                          +.+++-..|.+|.+++|.+..+..+-+             ..-|.|+.+...+|++..-+..    .+... ..++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCce
Confidence                345667889999999998876543322             3458899999999998765432    22222 5799


Q ss_pred             EEEccCCcCcccCc-----ccccCCCCCcEEEccCCcCceeC----cCcCCCCCCCCEeecCCCcCcccCcc----cC--
Q psy15002        262 RLNLGGNELTRVPQ-----TSLSKLENLRKLELLHNRIALIE----EGDFEGLHNLDSLVLAHNQLRTIPPR----VF--  326 (357)
Q Consensus       262 ~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~----~~--  326 (357)
                      .+.+.+|.+..-..     ..+..+.+|+.|+++.|.++...    ..+++.++.|+.|.+..|-++.-...    .|  
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            99999998875321     12356789999999999887643    34567788899999999988743221    12  


Q ss_pred             CCCCCCcEEeCCCCcccc
Q psy15002        327 AHLPLLNSLELDGNHIHT  344 (357)
Q Consensus       327 ~~~~~L~~L~L~~N~l~~  344 (357)
                      ...|+|..|...+|.+.+
T Consensus       269 ~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         269 KFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             hcCCCccccccchhhhcC
Confidence            235889999999997655

>KOG3665|consensus

Probab=97.65  E-value=6.6e-06  Score=80.46  Aligned_cols=180  Identities=18%  Similarity=0.218  Sum_probs=102.8

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcc-------------eecCccc-ccccccceEEEccCCcCce--e
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLA-------------VVEESSL-SSIGKKLKRLNLGGNELTR--V  153 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~-------------~~~~~~~-~~l~~~L~~L~ls~n~l~~--~  153 (357)
                      -.+..+++.+.....-.........|+++.+.+-...             .+....+ .....+|++|++++...-.  .
T Consensus        60 f~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W  139 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW  139 (699)
T ss_pred             heeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence            4555666666655544444444444556655542211             1111111 1112578888888864332  1


Q ss_pred             ChhhhcCCCCCcEEeccCCcccc--ccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc-cCcccCC
Q psy15002        154 PQTSLSKLENLRKLELLHNRIAL--IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA-LHSNAFQ  230 (357)
Q Consensus       154 ~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~  230 (357)
                      +...-.-+|+|+.|.+.+-.+..  ...-..+.++|..||++++.++.+.  .++++.+|+.|.+.+=.+.. ..-..+.
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF  217 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLF  217 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHh
Confidence            11222456888888888766532  1122223488888888888888773  56778888888777654443 1122345


Q ss_pred             CCCCCCEEEccCCcCcccC------CCccccccccccEEEccCCcCcc
Q psy15002        231 GLDTLEILTIFENKLSLIE------PDSFKGLEKKLKRLNLGGNELTR  272 (357)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~------~~~~~~~~~~L~~L~l~~n~l~~  272 (357)
                      ++++|+.||+|+.......      .+.-..+ |+|+.||.+++.++.
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L-peLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVL-PELRFLDCSGTDINE  264 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccC-ccccEEecCCcchhH
Confidence            6888888888876543321      1122234 688888888877664

>KOG3665|consensus

Probab=97.47  E-value=3.9e-05  Score=75.18  Aligned_cols=55  Identities=25%  Similarity=0.400  Sum_probs=24.6

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccc--ccCCCCCCCCCCeEECCC
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGKALTQLDLSQ  194 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~~L~l~~  194 (357)
                      ++|..||+|+++++.+  ..++++++|+.|.+.+=.+..  .-..+|.+++|+.||+|.
T Consensus       173 pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            3455555555555444  224445555555444444331  122344444444444444

>KOG2739|consensus

Probab=97.43  E-value=3.7e-05  Score=64.44  Aligned_cols=103  Identities=29%  Similarity=0.351  Sum_probs=59.0

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCC--ccc-cccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCce
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN--RIA-LIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLI  213 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~  213 (357)
                      ..|+.|++.+..++.+..  |-.+++|++|+++.|  ++. .++..+-..++|+++++++|+++.+.. .....+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            346777777777666543  566777888888877  333 333333334777777777777764332 23445566777


Q ss_pred             eecccccCcccCc---ccCCCCCCCCEEEccC
Q psy15002        214 LNLNHNKISALHS---NAFQGLDTLEILTIFE  242 (357)
Q Consensus       214 L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~  242 (357)
                      |++.+|..+....   ..|.-+++|++|+-.+
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            7777765443221   2233345665555443

>KOG2123|consensus

Probab=96.97  E-value=1.9e-05  Score=66.70  Aligned_cols=81  Identities=25%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             CCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCC-ccccccccccEEE
Q psy15002        186 ALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD-SFKGLEKKLKRLN  264 (357)
Q Consensus       186 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~  264 (357)
                      +.+.|++.++.+.+|..  ...|+.|+.|.|+-|+|+.+.+  +..+++|++|+|..|.|..++.- .+.++ ++|+.|+
T Consensus        20 ~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHh
Confidence            34455555555555542  3455666666666666665533  45556666666666666555432 22333 5666666


Q ss_pred             ccCCcCc
Q psy15002        265 LGGNELT  271 (357)
Q Consensus       265 l~~n~l~  271 (357)
                      |..|.-.
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            6655443

>KOG2123|consensus

Probab=96.88  E-value=3.9e-05  Score=64.86  Aligned_cols=100  Identities=25%  Similarity=0.330  Sum_probs=71.9

Q ss_pred             CCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCE
Q psy15002        232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDS  310 (357)
Q Consensus       232 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~  310 (357)
                      +.+.+.|++-++++..+.  ....+ +.|+.|.|+-|.++.+.+  +..+.+|++|+|..|.|.++.. ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kM-p~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKM-PLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhc-ccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            346677888888887763  22234 678888888888888764  7778888888888888888754 35577888888


Q ss_pred             eecCCCcCcccCc-----ccCCCCCCCcEEe
Q psy15002        311 LVLAHNQLRTIPP-----RVFAHLPLLNSLE  336 (357)
Q Consensus       311 L~L~~n~l~~~~~-----~~~~~~~~L~~L~  336 (357)
                      |.|..|..++-..     ..+.-+|+|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888887664332     2345567777775

>KOG2739|consensus

Probab=96.70  E-value=0.0009  Score=56.30  Aligned_cols=103  Identities=30%  Similarity=0.400  Sum_probs=67.0

Q ss_pred             CCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc--Ccc-cCcccccCCCCCcEEEccCCcCceeC-cCcCCCCC
Q psy15002        231 GLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE--LTR-VPQTSLSKLENLRKLELLHNRIALIE-EGDFEGLH  306 (357)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~  306 (357)
                      ....|+.+++.+.+++.+  ..|..+ ++|+.|.++.|.  ... +.. ....+|+|+++++++|++..+. ...+..+.
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~L-p~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKL-PKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCc-chhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhc
Confidence            345677777777777665  344555 689999999983  332 222 2345589999999999887532 12345577


Q ss_pred             CCCEeecCCCcCcccCc---ccCCCCCCCcEEeC
Q psy15002        307 NLDSLVLAHNQLRTIPP---RVFAHLPLLNSLEL  337 (357)
Q Consensus       307 ~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L  337 (357)
                      +|..|++.+|..+.+..   .+|.=+++|++||-
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            88889988887765443   23444566666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.39  E-value=0.0013  Score=33.10  Aligned_cols=20  Identities=35%  Similarity=0.722  Sum_probs=10.3

Q ss_pred             CcEEeCCCCcccccCcccccC
Q psy15002        332 LNSLELDGNHIHTVDPAAFSG  352 (357)
Q Consensus       332 L~~L~L~~N~l~~~~~~~~~~  352 (357)
                      |++|||++|.++.+++. |++
T Consensus         2 L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTT-TTT
T ss_pred             ccEEECCCCcCEeCChh-hcC
Confidence            45555555555544444 443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.02  E-value=0.0034  Score=31.60  Aligned_cols=16  Identities=50%  Similarity=0.885  Sum_probs=7.2

Q ss_pred             ceEEEccCCcCceeCh
Q psy15002        140 LKRLNLGGNELTRVPQ  155 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~  155 (357)
                      |++|++++|+++.+++
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341|consensus

Probab=95.54  E-value=0.00029  Score=63.01  Aligned_cols=251  Identities=20%  Similarity=0.105  Sum_probs=117.7

Q ss_pred             ceEEEEEecCCCC---cCccccccCCCcccEEEecCCC-cceecCcccccccccceEEEccCC-cCceeChh-hhcCCCC
Q psy15002         90 LIIFYLKLRHNNL---PKLTGFIFFGLDIRHLTIHNSS-LAVVEESSLSSIGKKLKRLNLGGN-ELTRVPQT-SLSKLEN  163 (357)
Q Consensus        90 ~~l~~L~l~~~~i---~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~~L~~L~ls~n-~l~~~~~~-~~~~l~~  163 (357)
                      ..++.|.++++.=   ..+....-...++++|.+.++. ++...-..+....++|++|++..| .++...-. .-.++++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4556777777632   2333334445578888777765 222222233333467888888774 45443322 2356788


Q ss_pred             CcEEeccCCcc-cc--ccCCCCCCCCCCeEECC--------------------------CC-CCeeeCccc-cCCCCcCc
Q psy15002        164 LRKLELLHNRI-AL--IEEGDFEGKALTQLDLS--------------------------QN-SLAVVPSPA-LKSLNHLL  212 (357)
Q Consensus       164 L~~L~l~~n~l-~~--~~~~~~~~~~L~~L~l~--------------------------~n-~l~~~~~~~-~~~l~~L~  212 (357)
                      |++|+++.+.- +.  +.........++.+...                          .+ .+++..... -..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            88888876531 11  00000001222233222                          21 122221100 11234555


Q ss_pred             eeecccccC-cccCcccC-CCCCCCCEEEccCCc-CcccCCCccccccccccEEEccCCcCcccC--cccccCCCCCcEE
Q psy15002        213 ILNLNHNKI-SALHSNAF-QGLDTLEILTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNELTRVP--QTSLSKLENLRKL  287 (357)
Q Consensus       213 ~L~l~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L  287 (357)
                      .+..+++.- +...-.++ .+.++|+.+-+.+++ ++......++...+.|+.+++.++......  ...-.+++.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            555555422 11111111 334667777776664 222222222222256666666665543221  1112355677777


Q ss_pred             EccCCcCc-eeC----cCcCCCCCCCCEeecCCCcCc-ccCcccCCCCCCCcEEeCCCC
Q psy15002        288 ELLHNRIA-LIE----EGDFEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGN  340 (357)
Q Consensus       288 ~l~~n~l~-~~~----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~N  340 (357)
                      .++++..- +..    ...-.++..++.+-|+++... +-.-+.+..+++|+.+++-++
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            77765422 211    111234566777777776544 222234456667777776665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.46  E-value=0.01  Score=27.67  Aligned_cols=12  Identities=42%  Similarity=0.603  Sum_probs=3.8

Q ss_pred             CCEeecCCCcCc
Q psy15002        308 LDSLVLAHNQLR  319 (357)
Q Consensus       308 L~~L~L~~n~l~  319 (357)
                      |+.|++++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.41  E-value=0.012  Score=30.90  Aligned_cols=22  Identities=36%  Similarity=0.736  Sum_probs=14.6

Q ss_pred             CCCcEEeCCCCcccccCccccc
Q psy15002        330 PLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                      ++|+.|+|++|+++.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566777777777777666664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.41  E-value=0.012  Score=30.90  Aligned_cols=22  Identities=36%  Similarity=0.736  Sum_probs=14.6

Q ss_pred             CCCcEEeCCCCcccccCccccc
Q psy15002        330 PLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                      ++|+.|+|++|+++.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566777777777777666664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.40  E-value=0.0097  Score=27.77  Aligned_cols=14  Identities=50%  Similarity=0.767  Sum_probs=4.8

Q ss_pred             CCcEEeccCCcccc
Q psy15002        163 NLRKLELLHNRIAL  176 (357)
Q Consensus       163 ~L~~L~l~~n~l~~  176 (357)
                      +|+.|++++|++++
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.38  E-value=0.01  Score=31.20  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=11.6

Q ss_pred             CCCcEEeccCCccccccCCCC
Q psy15002        162 ENLRKLELLHNRIALIEEGDF  182 (357)
Q Consensus       162 ~~L~~L~l~~n~l~~~~~~~~  182 (357)
                      ++|++|++++|.++.+|.++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.38  E-value=0.01  Score=31.20  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=11.6

Q ss_pred             CCCcEEeccCCccccccCCCC
Q psy15002        162 ENLRKLELLHNRIALIEEGDF  182 (357)
Q Consensus       162 ~~L~~L~l~~n~l~~~~~~~~  182 (357)
                      ++|++|++++|.++.+|.++|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555555555544

>KOG4341|consensus

Probab=95.36  E-value=0.00031  Score=62.85  Aligned_cols=229  Identities=19%  Similarity=0.134  Sum_probs=114.1

Q ss_pred             cccEEEecCCCcc-eecCcccccccccceEEEccCCc-CceeChhhh-cCCCCCcEEeccC-Ccccccc-CCCC-CCCCC
Q psy15002        114 DIRHLTIHNSSLA-VVEESSLSSIGKKLKRLNLGGNE-LTRVPQTSL-SKLENLRKLELLH-NRIALIE-EGDF-EGKAL  187 (357)
Q Consensus       114 ~L~~L~l~~~~l~-~~~~~~~~~l~~~L~~L~ls~n~-l~~~~~~~~-~~l~~L~~L~l~~-n~l~~~~-~~~~-~~~~L  187 (357)
                      .++.|.+.+++=. .-....+....+++++|.+.++. +++..-..+ ..+++|++|++.. ..++... .++. ..++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            6788888887532 22223344445789999999885 333322223 5678999999988 4455321 1122 23889


Q ss_pred             CeEECCCCC-CeeeCc-cccCCCCcCceeeccccc---------------------------CcccCc-ccCCCCCCCCE
Q psy15002        188 TQLDLSQNS-LAVVPS-PALKSLNHLLILNLNHNK---------------------------ISALHS-NAFQGLDTLEI  237 (357)
Q Consensus       188 ~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~---------------------------l~~~~~-~~l~~l~~L~~  237 (357)
                      ++++++.+. +++-.. ..+++...++.+.+.+|.                           ++.... ..-.++..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            999999864 332111 123344445555444431                           111100 00012344555


Q ss_pred             EEccCCc-CcccCCCccccccccccEEEccCCc-CcccCcccc-cCCCCCcEEEccCCcCceeC--cCcCCCCCCCCEee
Q psy15002        238 LTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSL-SKLENLRKLELLHNRIALIE--EGDFEGLHNLDSLV  312 (357)
Q Consensus       238 L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~  312 (357)
                      ++.+++. ++......++.-..+|+.+.+.+++ ++......+ .+.+.|+.+++.++......  ...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            5554432 2221122232222566666666654 333322222 24456666666665432211  11113467777777


Q ss_pred             cCCCcCcccC-----cccCCCCCCCcEEeCCCCcc
Q psy15002        313 LAHNQLRTIP-----PRVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       313 L~~n~l~~~~-----~~~~~~~~~L~~L~L~~N~l  342 (357)
                      ++++.+..-.     ...-.....|..+.|++++.
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            7766543222     11113345677777777754

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.28  E-value=0.025  Score=30.31  Aligned_cols=25  Identities=28%  Similarity=0.670  Sum_probs=19.1

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHH
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQH   79 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~   79 (357)
                      .||.     .|.|...    .|+|++.+++++|.
T Consensus         1 ~CP~-----~C~C~~~----~V~C~~~~L~~vP~   25 (28)
T PF01462_consen    1 ACPR-----PCTCSGL----TVDCSGRGLTAVPS   25 (28)
T ss_dssp             SSET-----TSEEETT----EEEETTSS-SSS-S
T ss_pred             CcCC-----CCEecCC----EeECCCCCCCccCC
Confidence            4888     6999933    99999999998874

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>KOG1947|consensus

Probab=93.78  E-value=0.0031  Score=59.88  Aligned_cols=32  Identities=16%  Similarity=0.127  Sum_probs=19.4

Q ss_pred             cCCCCCCCCEeecCCCcCcccC-cccCCCCCCC
Q psy15002        301 DFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLL  332 (357)
Q Consensus       301 ~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L  332 (357)
                      ...++++++.+.+.++...... ...+.+++.|
T Consensus       357 ~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  357 ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            3456778888888877744433 2344556655

>KOG1947|consensus

Probab=93.23  E-value=0.0069  Score=57.53  Aligned_cols=203  Identities=23%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             ccceEEEccCC-cCceeC-hhhhcCCCCCcEEeccCC--cccccc----CCCCCCCCCCeEECCCCC-CeeeCccccC-C
Q psy15002        138 KKLKRLNLGGN-ELTRVP-QTSLSKLENLRKLELLHN--RIALIE----EGDFEGKALTQLDLSQNS-LAVVPSPALK-S  207 (357)
Q Consensus       138 ~~L~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~l~~n--~l~~~~----~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~  207 (357)
                      +.|+.|.+.++ .+.... .......++|+.|+++++  .++..+    .......+|+.|+++++. +++..-..+. .
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            45666666655 333311 123455677777777652  111111    111122666777777665 4443322222 2


Q ss_pred             CCcCceeeccccc-CcccCcc-cCCCCCCCCEEEccCCcCc-ccCCCccccccccccEEEccCC--------------cC
Q psy15002        208 LNHLLILNLNHNK-ISALHSN-AFQGLDTLEILTIFENKLS-LIEPDSFKGLEKKLKRLNLGGN--------------EL  270 (357)
Q Consensus       208 l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n--------------~l  270 (357)
                      +++|+.|.+.++. ++...-. ....++.|++|+++++... ...........++++.|.+...              .-
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~  347 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT  347 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence            5677777766554 3322111 1234566777777766432 1000000111123333322221              11


Q ss_pred             ---cccCcccccCCCCCcEEEccCCcCceeC-cCcCCCCCCC--------------CEeecCCCcCcccCccc-CCC-CC
Q psy15002        271 ---TRVPQTSLSKLENLRKLELLHNRIALIE-EGDFEGLHNL--------------DSLVLAHNQLRTIPPRV-FAH-LP  330 (357)
Q Consensus       271 ---~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L--------------~~L~L~~n~l~~~~~~~-~~~-~~  330 (357)
                         ..........+++++.+.+..+...... ...+.+++.|              +.|+++.+.......-. ... +.
T Consensus       348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~  427 (482)
T KOG1947|consen  348 LTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCS  427 (482)
T ss_pred             cCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhh
Confidence               0111123456788888888877754443 2344455544              55555555444333311 111 44


Q ss_pred             CCcEEeCCCC
Q psy15002        331 LLNSLELDGN  340 (357)
Q Consensus       331 ~L~~L~L~~N  340 (357)
                      .+..+++.+.
T Consensus       428 ~~~~l~~~~~  437 (482)
T KOG1947|consen  428 NLKDLDLSGC  437 (482)
T ss_pred             ccccCCccCc
Confidence            4555666655

>KOG3864|consensus

Probab=93.07  E-value=0.018  Score=46.81  Aligned_cols=82  Identities=23%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCC-cceecCcccccccccceEEEccCC-cCceeChhhhcCCCCCcE
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS-LAVVEESSLSSIGKKLKRLNLGGN-ELTRVPQTSLSKLENLRK  166 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~-l~~~~~~~~~~l~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~  166 (357)
                      ..++.++-+++.|....-.-+.+. .++.|.+.+|. +....-..+.+..++|+.|++++| .|++-.-..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            455666666666665555545444 55666665553 111111222233356777777766 355444344556666666


Q ss_pred             EeccC
Q psy15002        167 LELLH  171 (357)
Q Consensus       167 L~l~~  171 (357)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            66543

>KOG4308|consensus

Probab=91.99  E-value=0.00096  Score=62.74  Aligned_cols=180  Identities=29%  Similarity=0.306  Sum_probs=81.0

Q ss_pred             ceEEEccCCcCceeCh----hhhcCCCCCcEEeccCCcccc-----ccCCCCCC-CCCCeEECCCCCCeeeCc----ccc
Q psy15002        140 LKRLNLGGNELTRVPQ----TSLSKLENLRKLELLHNRIAL-----IEEGDFEG-KALTQLDLSQNSLAVVPS----PAL  205 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~-~~L~~L~l~~n~l~~~~~----~~~  205 (357)
                      +..|.+.+|.+..-..    ..+...+.|+.|++++|.+..     +-..+-.. ..+++|++..+.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5555555655554322    223445566666666665541     11111111 344555555555543321    223


Q ss_pred             CCCCcCceeecccccCcccC----ccc----CCCCCCCCEEEccCCcCcccCC----CccccccccccEEEccCCcCccc
Q psy15002        206 KSLNHLLILNLNHNKISALH----SNA----FQGLDTLEILTIFENKLSLIEP----DSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       206 ~~l~~L~~L~l~~n~l~~~~----~~~----l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      .....++.++++.|.+....    ...    +....++++|.+.++.++....    ..+......+..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            33556666666666553211    111    2234566666666666553221    11111211244466666665533


Q ss_pred             Cc----ccccCC-CCCcEEEccCCcCceeCc----CcCCCCCCCCEeecCCCcCc
Q psy15002        274 PQ----TSLSKL-ENLRKLELLHNRIALIEE----GDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       274 ~~----~~~~~l-~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~  319 (357)
                      ..    ..+..+ +.++.++++.|.+++-..    ..+..++.++.+.+.+|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            11    112222 445556666665554322    12233445555555555554

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=91.82  E-value=0.11  Score=29.05  Aligned_cols=26  Identities=27%  Similarity=0.673  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHHH
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHT   80 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~   80 (357)
                      .||.     .|.|..    ..|+|+..+++++|..
T Consensus         1 ~CP~-----~C~C~~----~~V~C~~~~L~~vP~~   26 (33)
T smart00013        1 ACPA-----PCNCSG----TAVDCSGRGLTEVPLD   26 (33)
T ss_pred             CcCC-----CCEECC----CEeEeCCCCcCccCCC
Confidence            4888     699983    3999999999988854

>KOG0473|consensus

Probab=90.30  E-value=0.0056  Score=50.85  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=45.1

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      +..+.||++.|.+..+... |+-+..|..|+++.|.+..+|.+......+..++...|..+..|. .+...+.++++++.
T Consensus        42 kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQK  119 (326)
T ss_pred             ceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhhc
Confidence            3466666666666555543 555556666666666666666555555445555555555544443 34455555555555


Q ss_pred             ccc
Q psy15002        218 HNK  220 (357)
Q Consensus       218 ~n~  220 (357)
                      .|.
T Consensus       120 ~~~  122 (326)
T KOG0473|consen  120 KTE  122 (326)
T ss_pred             cCc
Confidence            544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.13  E-value=0.065  Score=27.40  Aligned_cols=18  Identities=33%  Similarity=0.553  Sum_probs=9.2

Q ss_pred             CCCcEEeCCCCcccccCc
Q psy15002        330 PLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~  347 (357)
                      ++|+.|+|++|+|++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            456666666666655433

...

>KOG3864|consensus

Probab=88.78  E-value=0.082  Score=43.12  Aligned_cols=76  Identities=20%  Similarity=0.235  Sum_probs=42.0

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc------ccccCCCCCCCCCCeEECCCC-CCeeeCccccCCCCcC
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI------ALIEEGDFEGKALTQLDLSQN-SLAVVPSPALKSLNHL  211 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L  211 (357)
                      .++.+|-+++.|..+.-+.+.+++.++.|.+.++.-      ..+..   ..++|+.|++++| +|++-.-..+..+++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHhhhh
Confidence            477788888877777666677777777777766541      11111   1255555555544 2333332333444455


Q ss_pred             ceeecc
Q psy15002        212 LILNLN  217 (357)
Q Consensus       212 ~~L~l~  217 (357)
                      +.|.+.
T Consensus       179 r~L~l~  184 (221)
T KOG3864|consen  179 RRLHLY  184 (221)
T ss_pred             HHHHhc
Confidence            544443

>KOG0473|consensus

Probab=88.29  E-value=0.013  Score=48.65  Aligned_cols=58  Identities=12%  Similarity=0.109  Sum_probs=24.7

Q ss_pred             ccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCc
Q psy15002        258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ  317 (357)
Q Consensus       258 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  317 (357)
                      +.+..|+++.|++.-+|. .+.....++.+++..|+.+..|. .+...++++.+++.+|.
T Consensus        65 t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   65 TRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             HHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhhccCc
Confidence            344444444444443332 23333444444444444444433 33344444444444444

>KOG4308|consensus

Probab=87.10  E-value=0.002  Score=60.62  Aligned_cols=180  Identities=23%  Similarity=0.218  Sum_probs=97.8

Q ss_pred             EEEEEecCCCCcCccccc-----cCCCcccEEEecCCCcceecCccccc----ccccceEEEccCCcCceeCh----hhh
Q psy15002         92 IFYLKLRHNNLPKLTGFI-----FFGLDIRHLTIHNSSLAVVEESSLSS----IGKKLKRLNLGGNELTRVPQ----TSL  158 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~----l~~~L~~L~ls~n~l~~~~~----~~~  158 (357)
                      +..+.+.+|.+..-....     -....+..|+++.|.+.......+..    ....+++|++..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            566777777776543322     22336777777777776332211111    11346667777777765432    223


Q ss_pred             cCCCCCcEEeccCCccc-----cccCCCC----CCCCCCeEECCCCCCeeeCc----cccCCCCc-CceeecccccCccc
Q psy15002        159 SKLENLRKLELLHNRIA-----LIEEGDF----EGKALTQLDLSQNSLAVVPS----PALKSLNH-LLILNLNHNKISAL  224 (357)
Q Consensus       159 ~~l~~L~~L~l~~n~l~-----~~~~~~~----~~~~L~~L~l~~n~l~~~~~----~~~~~l~~-L~~L~l~~n~l~~~  224 (357)
                      .....++.++++.|.+.     .++....    ...++++|.+.++.++....    ..+...+. +..+++..|++.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            44667777777777662     1111111    23567777777776653221    12333344 55577777766543


Q ss_pred             Cc----ccCCCC-CCCCEEEccCCcCcccCCC----ccccccccccEEEccCCcCcc
Q psy15002        225 HS----NAFQGL-DTLEILTIFENKLSLIEPD----SFKGLEKKLKRLNLGGNELTR  272 (357)
Q Consensus       225 ~~----~~l~~l-~~L~~L~L~~n~l~~~~~~----~~~~~~~~L~~L~l~~n~l~~  272 (357)
                      ..    ..+..+ +.++.+++++|.++.-...    ..... .+++.+.+++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhh-HHHHHhhcccCcccc
Confidence            11    223333 5667777777777654332    22233 467777777777654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.43  E-value=0.44  Score=24.85  Aligned_cols=17  Identities=24%  Similarity=0.532  Sum_probs=10.7

Q ss_pred             CCcEEeccCCccccccC
Q psy15002        163 NLRKLELLHNRIALIEE  179 (357)
Q Consensus       163 ~L~~L~l~~n~l~~~~~  179 (357)
                      +|++|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            46666666666666654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.28  E-value=0.73  Score=24.12  Aligned_cols=14  Identities=43%  Similarity=0.648  Sum_probs=6.8

Q ss_pred             CCcEEeccCCcccc
Q psy15002        163 NLRKLELLHNRIAL  176 (357)
Q Consensus       163 ~L~~L~l~~n~l~~  176 (357)
                      +|+.|++++|+|+.
T Consensus         3 ~L~~L~L~~NkI~~   16 (26)
T smart00365        3 NLEELDLSQNKIKK   16 (26)
T ss_pred             ccCEEECCCCccce
Confidence            44455555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	357
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-15
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-15
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		6e-08
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		3e-14
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		9e-08
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-13
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-13
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-13
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-11
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-08
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		3e-12
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-11
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-08
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-10
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-10
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-10
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-10
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-09
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-10
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-09
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		9e-10
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-09
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-09
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-09
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		6e-09
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		6e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		6e-09
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		6e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		7e-09
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		7e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		7e-08
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		7e-08
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-08
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		9e-08
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-07
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-07
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-07
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-07
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-07
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		3e-07
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		1e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		3e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		4e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-06
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		1e-06
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-06
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		3e-06
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-06
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		6e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-06
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-06
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		5e-06
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		1e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		4e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		3e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		6e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		9e-04

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKAL-TQLDLSQNSLAV 199
           +R+ L GN ++ VP  S     NL  L L  N +A I+   F G AL  QLDLS N+   
Sbjct: 34  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
              PA                        F GL  L  L +    L  + P  F+GL   
Sbjct: 94  SVDPA-----------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGL-AA 129
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L+ L L  N L  +P  +   L NL  L L  NRI+ + E  F GLH+LD L+L  N++ 
Sbjct: 130 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            + P  F  L  L +L L  N++  +   A + L A
Sbjct: 190 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
           G+    +R+ L GN ++ VP  S     NL  L L  N +A I+   F GL  L+ L L+
Sbjct: 28  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 87
Query: 315 HN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            N QLR++ P  F  L  L++L LD   +  + P  F GL A
Sbjct: 88  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 129

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 95/216 (43%), Gaps = 25/216 (11%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKAL-TQLDLSQNSLAV 199
           +R+ L GN ++ VP  S     NL  L L  N +A I+   F G AL  QLDLS N+   
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
              PA                        F GL  L  L +    L  + P  F+GL   
Sbjct: 95  SVDPA-----------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGL-AA 130
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L+ L L  N L  +P  +   L NL  L L  NRI+ + E  F GLH+LD L+L  N++ 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            + P  F  L  L +L L  N++  +   A + L A
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
           G+    +R+ L GN ++ VP  S     NL  L L  N +A I+   F GL  L+ L L+
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 315 HN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            N QLR++ P  F  L  L++L LD   +  + P  F GL A
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 88/203 (43%), Gaps = 25/203 (12%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           +R+ L GN ++ VP  S     NL  L L  N +A I+   F G   L QLDLS N+   
Sbjct: 34  QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           V  P                         F+GL  L  L +    L  + P  F+GL   
Sbjct: 94  VVDP-----------------------TTFRGLGHLHTLHLDRCGLQELGPGLFRGL-AA 129
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L+ L L  N L  +P  +   L NL  L L  NRI  + E  F GLH+LD L+L  N + 
Sbjct: 130 LQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Query: 320 TIPPRVFAHLPLLNSLELDGNHI 342
            + P  F  L  L +L L  N++
Sbjct: 190 RVHPHAFRDLGRLMTLYLFANNL 212

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
           G+    +R+ L GN ++ VP  S     NL  L L  N +A I+   F GL  L+ L L+
Sbjct: 28  GIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLS 87
Query: 315 HN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            N QLR + P  F  L  L++L LD   +  + P  F GL A
Sbjct: 88  DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAA 129

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           + LNL  N +  +   +   L +L  L+L  N +  IE G F G  +L  L+L  N L  
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEK 258
           VP+ A                  ++ S AF  + +L  L + E  +L  I   +F+GL  
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL-V 156
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
            L+ LNLG   L  +P  +L+ L  L +LEL  NR+ LI  G F+GL +L  L L H Q+
Sbjct: 157 NLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            TI    F  L  L  L L  N++ ++    F+ L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
           EL  VP    S   N R L L  N I +I    F+ L +L+ L L+ N +R I    F  
Sbjct: 25  ELAEVPA---SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
           LP LN+LEL  N + TV   AF  L
Sbjct: 82  LPSLNTLELFDNRLTTVPTQAFEYL 106

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           + LNL  N +  +   +   L +L  L+L  N +  IE G F G  +L  L+L  N L  
Sbjct: 38  RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEK 258
           VP+ A                  ++ S AF  + +L  L + E  +L  I   +F+GL  
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL-V 156
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
            L+ LNLG   L  +P  +L+ L  L +LEL  NR+ LI  G F+GL +L  L L H Q+
Sbjct: 157 NLRYLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            TI    F  L  L  L L  N++ ++    F+ L
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
           EL  VP    S   N R L L  N I +I    F+ L +L+ L L+ N +R I    F  
Sbjct: 25  ELAEVPA---SIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
           LP LN+LEL  N + TV   AF  L
Sbjct: 82  LPSLNTLELFDNRLTTVPTQAFEYL 106

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 101/229 (44%), Gaps = 25/229 (10%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQ 194
           I    + LNL  N +  +   +   L +L  L+L  N I  IE G F G A L  L+L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSF 253
           N L V+PS A                  ++ S AF  + +L  L + E  KL  I   +F
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 254 KGLEKKLKRLNLG----------------------GNELTRVPQTSLSKLENLRKLELLH 291
           +GL   LK LNLG                      GN    +   S   L +L+KL +++
Sbjct: 193 EGL-FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           ++++LIE   F+GL +L  L LAHN L ++P  +F  L  L  L L  N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 26/201 (12%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAV 199
           K+L+L  N+L+ +P  +  +L  LR L L  N++  +  G F E K L  L ++ N L  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           +P                           F  L  L  L +  N+L  + P  F  L K 
Sbjct: 100 LPI------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK- 134
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L  L+LG NEL  +P+    KL +L++L L +N++  + EG F+ L  L +L L +NQL+
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 320 TIPPRVFAHLPLLNSLELDGN 340
            +P   F  L  L  L+L  N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 1/166 (0%)
Query: 189 QLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLI 248
           +LDL  N L+ +PS A                   L +  F+ L  LE L + +NKL  +
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
               F  L   L  L L  N+L  +P      L  L  L L +N +  + +G F+ L +L
Sbjct: 101 PIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
             L L +NQL+ +P   F  L  L +L+LD N +  V   AF  LE
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
           K+L+L  N+L+ +P  +  +L  LR L L  N++  +  G F+ L NL++L +  N+L+ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           +P  VF  L  L  L LD N + ++ P  F  L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
           KG+ + +  L L GN+ T VP+  LS  ++L  ++L +NRI+ +    F  +  L +L+L
Sbjct: 27  KGIPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           ++N+LR IPPR F  L  L  L L GN I  V   AF+ L A
Sbjct: 86  SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 5/209 (2%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQ 194
           I    + LNL  N++  +   S   L +L  L+L  N I  IE G F G A L  L+L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 195 NSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFE-NKLSLIEPDSF 253
           N L  +P+ A                  ++ S AF  + +L  L + E  +LS I   +F
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
           +GL   L+ LNL    L  +P  +L+ L  L +L+L  N ++ I  G F+GL +L  L +
Sbjct: 182 EGL-SNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
             +Q++ I    F +L  L  + L  N++
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296
           +L + EN++ +I+ +SFK L + L+ L L  N +  +   + + L NL  LEL  NR+  
Sbjct: 68  LLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 354
           I  G F  L  L  L L +N + +IP   F  +P L  L+L +   +  +   AF GL 
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 1/128 (0%)
Query: 228 AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL 287
           A + L  L  L +  N+L  +    F  L   LK L L  N+L  +P     KL NL  L
Sbjct: 80  ALKELTNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
            L HN++  + +G F+ L NL  L L +NQL+++P  VF  L  L  L L+ N + +V  
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 348 AAFSGLEA 355
             F  L +
Sbjct: 199 GVFDRLTS 206

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
           L+L  N+++ + +     L++L  L L++N+I+ I E  F   + L +L +S+N L  +P
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 202 SPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKK 259
                                 +    F GL  +  + +  N L  S  EP +F GL  K
Sbjct: 119 P---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--K 173
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L  L +   +LT +P+      E L +L L HN+I  IE  D      L  L L HNQ+R
Sbjct: 174 LNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            I     + LP L  L LD N +  V PA    L+
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLK 264

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296
           +L +  N +S +  D FKGL+  L  L L  N+++++ + + S L  L+KL +  N +  
Sbjct: 58  LLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE 116
Query: 297 IEEGDFEGLHNLDS----LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT--VDPAAF 350
           I         NL S    L +  N++R +P  VF+ L  +N +E+ GN +     +P AF
Sbjct: 117 IPP-------NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 351 SGLE 354
            GL+
Sbjct: 170 DGLK 173

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 9/222 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
           LK LNL  NEL+++   +     NL +L+L+ N I  I+   F+  K L +LDLS N L+
Sbjct: 75  LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNA--FQGLDTLEILTIFENKLSLIEPDSFKGL 256
                                   AL S    F G  +L  L +  N L    P  F+ +
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 257 EKKLKRLNLGGNELT-RVPQTSLSKLEN--LRKLELLHNRIALIEEGDFEGLH--NLDSL 311
             KL  L L   +L   + +    +L N  ++ L L +N++    E  F GL   NL  L
Sbjct: 195 -GKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            L++N L  +    F++LP L  L L+ N+I  + P +F GL
Sbjct: 254 DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGL 295

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           K ++  G  L  VP    +  E   KL+L    +A + +  F G   LT L+L  N L  
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTE---KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
                                   L +  F  L  L  L +  N+L+ +    F  L  +
Sbjct: 74  ------------------------LSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQ 108
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L +L LGGN+L  +P     +L  L++L L  N++  I  G F+ L NL +L L+ NQL+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 320 TIPPRVFAHLPLLNSLELDGNHI 342
           ++P   F  L  L ++ L GN  
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
           E L +    L+ +   +F+GL  KL  LNL  N+L  +       L  L  L L +N++A
Sbjct: 38  EKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            +  G F+ L  LD L L  NQL+++P  VF  L  L  L L+ N + ++   AF  L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           K ++  G  L  VP    +  E   KL+L    +A + +  F G   LT L+L  N L  
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTE---KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 200 VPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
                                   L +  F  L  L  L +  N+L+ +    F  L  +
Sbjct: 74  ------------------------LSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-TQ 108
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L +L LGGN+L  +P     +L  L++L L  N++  I  G F+ L NL +L L+ NQL+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Query: 320 TIPPRVFAHLPLLNSLELDGNHI 342
           ++P   F  L  L ++ L GN  
Sbjct: 169 SVPHGAFDRLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
           E L +    L+ +   +F+GL  KL  LNL  N+L  +       L  L  L L +N++A
Sbjct: 38  EKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96
Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            +  G F+ L  LD L L  NQL+++P  VF  L  L  L L+ N + ++   AF  L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 227 NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK 286
           +A + L  L  L +  N+L  +    F  L   LK L L  N+L  +P     KL NL  
Sbjct: 79  SALKELTNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
           L L HN++  + +G F+ L NL  L L++NQL+++P  VF  L  L  L L  N + +V 
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 347 PAAFSGLEA 355
              F  L +
Sbjct: 198 DGVFDRLTS 206

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 100/263 (38%), Gaps = 74/263 (28%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKA-LTQLDLSQNSLA 198
           L+ L L  N ++ V   + + L NLR L L  NR+ LI  G F G + LT+LD+S+N + 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
           +                        L    FQ L  L+ L + +N L  I   +F GL  
Sbjct: 118 I------------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-N 152
Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH------------ 306
            L++L L    LT +P  +LS L  L  L L H  I  I +  F+ L+            
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 307 ------------NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT---------- 344
                       NL SL + H  L  +P     HL  L  L L  N I T          
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 345 --------------VDPAAFSGL 353
                         V+P AF GL
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGL 295

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
            L+ + F     LE L + EN +S +EP +F  L   L+ L L  N L  +P    + L 
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLS 104
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
           NL KL++  N+I ++ +  F+ L+NL SL +  N L  I  R F+ L  L  L L+  ++
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 343 HTVDPAAFSGLEAKV 357
            ++   A S L   +
Sbjct: 165 TSIPTEALSHLHGLI 179

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 70/251 (27%)
Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
           K LK LNL  N++ ++   +   L+NL+ L L +N +  +   +F G   +  +DL +N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 197 LAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIE-----PD 251
           +A++                            F+ L+ L+ L + +N L+ I      PD
Sbjct: 350 IAII------------------------QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 252 SFKGLEK--KLKRLNLGGN----------------ELTRVPQTSL--------------- 278
            F    K   L ++NL  N                 L RVP   +               
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 279 --SKLENLRKLELLHNRIALIEEGD-----FEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
             S+  +L +L L  N + L  E +     FEGL +L  L L HN L ++PP VF+HL  
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 332 LNSLELDGNHI 342
           L  L L+ N +
Sbjct: 506 LRGLSLNSNRL 516

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
           +L+S  F+ L  L++L +  NK++ I  ++F GL+  L+ LNL  N L  +  ++   L 
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLP 338
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
            +  ++L  N IA+I++  F+ L  L +L L  N L TI       +P +  + L GN +
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL 393
Query: 343 HTV 345
            T+
Sbjct: 394 VTL 396

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
           L+L  N++T +       L+NL  L L++N+I+ I  G F     L +L LS+N L  +P
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 SPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKK 259
                                 +  + F GL+ + ++ +  N L  S IE  +F+G+ KK
Sbjct: 117 E---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KK 172
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L  + +    +T +PQ       +L +L L  N+I  ++    +GL+NL  L L+ N + 
Sbjct: 173 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTV 345
            +     A+ P L  L L+ N +  V
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKV 255

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           L+L  N++T +       L+NL  L L++N+I+ I  G F  L  L+ L L+ NQL+ +P
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            ++      L  L +  N I  V  + F+GL
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGL 144

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 10/206 (4%)
Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
           L+L  N++T +       L+NL  L L++N+I+ I  G F     L +L LS+N L  +P
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 202 SPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKK 259
                                 +  + F GL+ + ++ +  N L  S IE  +F+G+ KK
Sbjct: 117 E---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KK 172
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L  + +    +T +PQ       +L +L L  N+I  ++    +GL+NL  L L+ N + 
Sbjct: 173 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTV 345
            +     A+ P L  L L+ N +  V
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKV 255

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           L+L  N++T +       L+NL  L L++N+I+ I  G F  L  L+ L L+ NQL+ +P
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            ++      L  L +  N I  V  + F+GL
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGL 144

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
           AL  + F     LE LT+ +N+++ I+ ++F GL   LK LNL  N L  +       L+
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK-LNLSQNFLGSIDSRMFENLD 347
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
            L  L+L +N I  + +  F GL NL  L L  NQL+++P  +F  L  L  + L  N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N++  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N++  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 263 LNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
           L L  NE T +  T +  KL  LRK+   +N+I  IEEG FEG   ++ ++L  N+L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
             ++F  L  L +L L  N I  V   +F GL +
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
           G+     RL L  N+L  +P     KL  L KL L  N+I  + +G F+ L  L  L L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            N+L+++P  VF  L  L  L LD N + +V    F  L +
Sbjct: 85  ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N++  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N++  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 98  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N +  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 157 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 194

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N +  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N +  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N +  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N +  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           Q L  L +L +  N+L+ +   + +GL  +L+ L L GNEL  +P   L+    L KL L
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            +N +  +  G   GL NLD+L+L  N L TIP   F 
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 185 KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENK 244
           + +T++ L QN++ V+P                          AF     L  + +  N+
Sbjct: 32  ETITEIRLEQNTIKVIPP------------------------GAFSPYKKLRRIDLSNNQ 67
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
           +S + PD+F+GL + L  L L GN++T +P++    L +L+ L L  N+I  +    F+ 
Sbjct: 68  ISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           LHNL+ L L  N+L+TI    F+ L  + ++ L  N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
           +T+  + + +N + +I P +F    KKL+R++L  N+++ +   +   L +L  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
           +I  + +  FEGL +L  L+L  N++  +    F  L  LN L L  N + T+    FS 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 353 LEA 355
           L A
Sbjct: 151 LRA 153

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L +L LGGN+L  +P    +KL +L  L L  N++  +  G F+ L  L  L L  NQL+
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           ++P  VF  L  L  L L  N + +V    F  L +
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 25/156 (16%)
Query: 185 KALTQLDLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENK 244
           + +T++ L QN++ V+P                          AF     L  + +  N+
Sbjct: 32  ETITEIRLEQNTIKVIPP------------------------GAFSPYKKLRRIDLSNNQ 67
Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
           +S + PD+F+GL + L  L L GN++T +P++    L +L+ L L  N+I  +    F+ 
Sbjct: 68  ISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQD 126
Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           LHNL+ L L  N+L+TI    F+ L  + ++ L  N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
           +T+  + + +N + +I P +F    KKL+R++L  N+++ +   +   L +L  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90
Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
           +I  + +  FEGL +L  L+L  N++  +    F  L  LN L L  N + T+    FS 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 353 LEA 355
           L A
Sbjct: 151 LRA 153

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
           L T E+L + +N+L  I  D   G    L +L L  N+LT +   +     ++++L+L  
Sbjct: 29  LHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           N+I  I    F GLH L +L L  NQ+  + P  F HL  L SL L  N
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           LKR       LT +P   L+ + NL  LEL  N I  +    F+ L NL+S+    N+LR
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR 183
Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            +P  +F  +P L  L L  N + +V    F  L +
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
           T ++L +++N+++ +EP  F  L  +L RL+L  N+LT +P     KL  L +L L  N+
Sbjct: 31  TTQVLYLYDNRITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 294 IALIEEGDFEGLHNLDSLVLAHN 316
           +  I  G F+ L +L  + L +N
Sbjct: 90  LKSIPRGAFDNLRSLTHIWLLNN 112

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           ++  G  L  VP T +     +  L L  NRI  +E G F+ L  L  L L +NQL  +P
Sbjct: 14  VDCSGKSLASVP-TGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
             VF  L  L  L L+ N + ++   AF  L +
Sbjct: 71  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRS 103

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGLHNLDSLVLAHNQLRTI 321
           L+    +L  VPQ SL     L  L+L HN ++ L  E     L NL SL+L+HN L  I
Sbjct: 23  LSCSKQQLPNVPQ-SLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79
Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
               F  +P L  L+L  NH+HT+D   FS L+A
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
           T ++L +++N+++ +EP  F  L  +L RL+L  N+LT +P     KL  L +L L  N+
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 294 IALIEEGDFEGLHNLDSLVLAHN 316
           +  I  G F+ L +L  + L +N
Sbjct: 90  LKSIPRGAFDNLKSLTHIWLLNN 112

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           ++  G  L  VP T +     +  L L  N+I  +E G F+ L  L  L L +NQL  +P
Sbjct: 14  VDCSGKSLASVP-TGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
             VF  L  L  L L+ N + ++   AF  L++
Sbjct: 71  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
           GL + +K L+L  N +T +  + L +  NL+ L L  N I  IEE  F  L +L+ L L+
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGL 353
           +N L  +    F  L  L  L L GN   T+ + + FS L
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
           T ++L +++N+++ +EP  F  L  +L RL+L  N+LT +P     KL  L +L L  N+
Sbjct: 39  TTQVLYLYDNQITKLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 294 IALIEEGDFEGLHNLDSLVLAHN 316
           +  I  G F+ L +L  + L +N
Sbjct: 98  LKSIPRGAFDNLKSLTHIWLLNN 120

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           ++  G  L  VP T +     +  L L  N+I  +E G F+ L  L  L L +NQL  +P
Sbjct: 22  VDCSGKSLASVP-TGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
             VF  L  L  L L+ N + ++   AF  L++
Sbjct: 79  AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 111

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 255 GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
           GL + +K L+L  N +T +  + L +  NL+ L L  N I  IEE  F  L +L+ L L+
Sbjct: 23  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGL 353
           +N L  +    F  L  L  L L GN   T+ + + FS L
Sbjct: 83  YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 122

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 249 EPD--SFKGLEKK-LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
           +PD  +FKGLE   +K  +L  +++  + ++  S   +L +L L  N I  I++  F GL
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
            +L  L L  NQL+++P  +F  L  L  + L  N
Sbjct: 323 THLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
           L    F  L  L+ L +  N+L  +    F  L  +L  L+LG N+LT +P     +L +
Sbjct: 55  LEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           L++L +  N++  +  G  E L +L  L L  NQL++IP   F  L  L    L GN
Sbjct: 114 LKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
           ++L L +N+I  +E G F+ L NL  L    N+L  IP  VF  L  L  L+L+ NH+ +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 345 VDPAAFSGLEA 355
           +   AF  L++
Sbjct: 96  IPRGAFDNLKS 106

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE 282
            +H+  F  L  L  L +   +++ I  D+F+    +L  L L GN L  + +TSL+  +
Sbjct: 44  TIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQS-HHQLSTLVLTGNPLIFMAETSLNGPK 102
Query: 283 NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNH 341
           +L+ L L+   I+ +E      L NL+SL L  N + +I  P+ F     L  L+   N 
Sbjct: 103 SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARN-LKVLDFQNNA 161
Query: 342 IHTVDPAAFSGLEAKV 357
           IH +       LE  +
Sbjct: 162 IHYISREDMRSLEQAI 177

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLA 198
           LK LNL  NEL+++   + +   NL +L L+ N I  I+   F + K L  LDLS N L+
Sbjct: 80  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGL--DTLEILTIFENKLSLIEPDSFKGL 256
                                   AL S         +L+ L +  N++    P  F  +
Sbjct: 140 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 199
Query: 257 EKK----LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDS 310
            +     L  + LG   LT      L+   ++R L L +++++      F GL   NL  
Sbjct: 200 GRLFGLFLNNVQLGP-SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 257
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L L++N L  +    FA LP L    L+ N+I  +   +  GL
Sbjct: 258 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 300

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLA 198
           LK LNL  NEL+++   + +   NL +L L+ N I  I+   F + K L  LDLS N L+
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGL--DTLEILTIFENKLSLIEPDSFKGL 256
                                   AL S         +L+ L +  N++    P  F  +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194
Query: 257 EKK----LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDS 310
            +     L  + LG   LT      L+   ++R L L +++++      F GL   NL  
Sbjct: 195 GRLFGLFLNNVQLGP-SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L L++N L  +    FA LP L    L+ N+I  +   +  GL
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 11/223 (4%)
Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLA 198
           LK LNL  NEL+++   + +   NL +L L+ N I  I+   F + K L  LDLS N L+
Sbjct: 85  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 199 VVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGL--DTLEILTIFENKLSLIEPDSFKGL 256
                                   AL S         +L+ L +  N++    P  F  +
Sbjct: 145 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 204
Query: 257 EKK----LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDS 310
            +     L  + LG   LT      L+   ++R L L +++++      F GL   NL  
Sbjct: 205 GRLFGLFLNNVQLGP-SLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 262
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L L++N L  +    FA LP L    L+ N+I  +   +  GL
Sbjct: 263 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 305

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 17/220 (7%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DL 192
           I    KRL LG           L  LENLR+L+L H+ I   +  + + + L+ L   +L
Sbjct: 332 IKGNTKRLELGTG--------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 193 SQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNA-FQGLDTLEILTIFENKLSLIEPD 251
           S N    + + A                     + + FQ L  L++L +  + L +    
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLHNL 308
            F GL   L+ LNL GN   +      + L+ L +LE+L      ++ I++  F  L  +
Sbjct: 444 LFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
           + + L+HN+L +      +HL  +  L L  NHI  + P+
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 80/214 (37%), Gaps = 7/214 (3%)
Query: 136 IGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL---IEEGDFEGKALTQLDL 192
           I     RL L  N+L  +P     KL  L KL L  N ++      + DF   +L  LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 193 SQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
           S N +  + S                        + F  L  L  L I      +     
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 253 FKGLEKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
           F GL   L+ L + GN      +P    ++L NL  L+L   ++  +    F  L +L  
Sbjct: 146 FNGL-SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 344
           L ++HN   ++    +  L  L  L+   NHI T
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 83/212 (39%), Gaps = 17/212 (8%)
Query: 138 KKLKRL----NLGGNELTRVPQTSLSKLENLRKLELLHNRIAL---IEEGDFEGKALTQL 190
           K LKRL    N GGN  + V       L +L  L+L  N ++      + DF   +L  L
Sbjct: 325 KSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 191 DLSQNSLAVVPSPAXXXXXXXXXXXXXXXXXXALHSNAFQGLDTLEILTIFENKLSLIEP 250
           DLS N +  + S                        + F  L  L  L I      +   
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 251 DSFKGLEKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
             F GL   L+ L + GN      +P    ++L NL  L+L   ++  +    F  L +L
Sbjct: 439 GIFNGL-SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
             L +A NQL+++P  +F  L  L  + L  N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-53
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-49
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-53
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-50
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-50
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-48
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-44
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-45
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-40
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-39
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-35
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-32
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-38
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-30
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-37
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-30
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-29
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-28
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-23
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-24
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  194 bits (495), Expect = 4e-58
 Identities = 73/263 (27%), Positives = 123/263 (46%), Gaps = 6/263 (2%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L+L  N +  +    F  L  +R L + ++ L ++     + +   L +L++  N++  
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL-SNLTKLDISENKIVI 118

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +       L NL+ LE+  N +  I    F G  +L QL L + +L  +P+ AL  L+ L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTI-FENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           ++L L H  I+A+   +F+ L  L++L I     L  + P+   GL   L  L++    L
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNL 236

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
           T VP  ++  L  LR L L +N I+ IE      L  L  + L   QL  + P  F  L 
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 331 LLNSLELDGNHIHTVDPAAFSGL 353
            L  L + GN + T++ + F  +
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSV 319

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  191 bits (488), Expect = 4e-57
 Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 3/241 (1%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
           + R L +  + +  + +   +S    L+ L L  N ++ V   + + L NLR L L  NR
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
           + LI  G F G   LT+LD+S+N + ++     + L +L  L +  N +  +   AF GL
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
           ++LE LT+ +  L+ I  ++   L   L  L L    +  +   S  +L  L+ LE+ H 
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
                   +     NL SL + H  L  +P     HL  L  L L  N I T++ +    
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 353 L 353
           L
Sbjct: 271 L 271

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  181 bits (462), Expect = 3e-53
 Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 6/253 (2%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L LR N L  +   +F GL  +  L I  + + ++ +     +   LK L +G N+L  
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVY 142

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +   + S L +L +L L    +  I          L  L L   ++  +   + K L  L
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 212 LILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
            +L ++H   +  +  N   GL  L  L+I    L+ +   + + L   L+ LNL  N +
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHL-VYLRFLNLSYNPI 260

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
           + +  + L +L  L++++L+  ++A++E   F GL+ L  L ++ NQL T+   VF  + 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 331 LLNSLELDGNHIH 343
            L +L LD N + 
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  170 bits (433), Expect = 4e-49
 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           + +         VP+   +     R L+L  NRI  + + +F     L +L+L++N ++ 
Sbjct: 14  RAVLCHRKRFVAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           V   A  +L +L  L L  N++  +    F GL  L  L I ENK+ ++    F+ L   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YN 129

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           LK L +G N+L  +   + S L +L +L L    +  I       LH L  L L H  + 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 320 TIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGL 353
            I    F  L  L  LE+    ++ T+ P    GL
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  158 bits (402), Expect = 1e-44
 Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
              LDL +N +  +      S  HL  L LN N +SA+   AF  L  L  L +  N+L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
           LI    F GL   L +L++  N++  +       L NL+ LE+  N +  I    F GL+
Sbjct: 94  LIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           +L+ L L    L +IP    +HL  L  L L   +I+ +   +F  L  
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
               L L  N+++T+    FA  P L  LEL+ N +  V+P AF+ L  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  186 bits (473), Expect = 4e-55
 Identities = 72/216 (33%), Positives = 107/216 (49%), Gaps = 5/216 (2%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
            + LNL  N +  +   +   L +L  L+L  N I  IE G F G  +L  L+L  N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLE 257
           V+PS A + L+ L  L L +N I ++ S AF  + +L  L + E  KL  I   +F+GL 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
             LK LNLG   +  +P  +L+ L  L +LE+  N    I  G F GL +L  L + ++Q
Sbjct: 197 N-LKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           +  I    F  L  L  L L  N++ ++    F+ L
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  181 bits (460), Expect = 3e-53
 Identities = 75/319 (23%), Positives = 132/319 (41%), Gaps = 43/319 (13%)

Query: 24  SLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTT 83
            L      L   +        Q CP     S C CS + + +                  
Sbjct: 23  YLTAQVWILCAAIAAAASAGPQNCP-----SVCSCSNQFSKVV----------------- 60

Query: 84  LKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRL 143
                             L ++   I    + R+L +  +++ +++  +   +   L+ L
Sbjct: 61  -------------CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHL-HHLEVL 104

Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
            LG N + ++   + + L +L  LEL  N + +I  G FE    L +L L  N +  +PS
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 203 PALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
            A   +  L+ L+L    K+  +   AF+GL  L+ L +    +  +   +   L   L+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPL-VGLE 221

Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
            L + GN    +   S   L +L+KL +++++++LIE   F+GL +L  L LAHN L ++
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 322 PPRVFAHLPLLNSLELDGN 340
           P  +F  L  L  L L  N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  169 bits (430), Expect = 6e-49
 Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 8/219 (3%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
           +  ++      L+ VPQ  +    N R L L+ N I +I+   F     L  L L +NS+
Sbjct: 55  QFSKVVCTRRGLSEVPQ-GIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +   A   L  L  L L  N ++ + S AF+ L  L  L +  N +  I   +F  + 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 258 KKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             L RL+LG   +L  + + +   L NL+ L L    I  +   +   L  L+ L ++ N
Sbjct: 172 S-LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGN 228

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
               I P  F  L  L  L +  + +  ++  AF GL +
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  184 bits (470), Expect = 9e-55
 Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 5/218 (2%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
            + LNL  N++  +   S   L +L  L+L  N I  IE G F G   L  L+L  N L 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLE 257
            +P+ A   L+ L  L L +N I ++ S AF  + +L  L + E  +LS I   +F+GL 
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
             L+ LNL    L  +P  +L+ L  L +L+L  N ++ I  G F+GL +L  L +  +Q
Sbjct: 186 N-LRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           ++ I    F +L  L  + L  N++  +    F+ L  
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  182 bits (464), Expect = 7e-54
 Identities = 85/324 (26%), Positives = 136/324 (41%), Gaps = 43/324 (13%)

Query: 19  PKFGSSLATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQ 78
           P   + L  S L +LL+       S Q CP     S C CS + + +             
Sbjct: 7   PGMPALLLVSLLSVLLMGCVAETGSAQTCP-----SVCSCSNQFSKVI------------ 49

Query: 79  HTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGK 138
                                 NL ++   I    + R L +H + + +++ +S   + +
Sbjct: 50  ------------------CVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHL-R 88

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
            L+ L L  N +  +   + + L NL  LEL  NR+  I  G F     L +L L  N +
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 198 AVVPSPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
             +PS A   +  L  L+L    ++S +   AF+GL  L  L +    L  I   +   L
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPL 206

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             KL  L+L GN L+ +   S   L +L+KL ++ ++I +IE   F+ L +L  + LAHN
Sbjct: 207 -IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 317 QLRTIPPRVFAHLPLLNSLELDGN 340
            L  +P  +F  L  L  + L  N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  169 bits (429), Expect = 7e-49
 Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 8/219 (3%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
           +  ++      L  VP   +S   N R L L  N+I +I+   F+  + L  L LS+N +
Sbjct: 44  QFSKVICVRKNLREVPD-GIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +   A   L +L  L L  N+++ + + AF  L  L+ L +  N +  I   +F  + 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 258 KKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             L+RL+LG    L+ + + +   L NLR L L    +  I   +   L  LD L L+ N
Sbjct: 161 -SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGN 217

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            L  I P  F  L  L  L +  + I  ++  AF  L++
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  175 bits (445), Expect = 9e-53
 Identities = 69/212 (32%), Positives = 97/212 (45%), Gaps = 3/212 (1%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             I    +R+ L GN ++ VP  S     NL  L L  N +A I+   F G   L QLDL
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 193 SQNS-LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
           S N+ L  V       L  L  L+L+   +  L    F+GL  L+ L + +N L  +  D
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
           +F+ L   L  L L GN ++ VP+ +   L +L +L L  NR+A +    F  L  L +L
Sbjct: 148 TFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
            L  N L  +P    A L  L  L L+ N   
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  168 bits (427), Expect = 3e-50
 Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 6/215 (2%)

Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
            +     L  VP   +      +++ L  NRI+ +    F   + LT L L  N LA + 
Sbjct: 16  TSCPQQGLQAVPV-GIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 202 SPALKSLNHLLILNLNHN-KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
           + A   L  L  L+L+ N ++ ++    F GL  L  L +    L  + P  F+GL   L
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AAL 131

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
           + L L  N L  +P  +   L NL  L L  NRI+ + E  F GLH+LD L+L  N++  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           + P  F  L  L +L L  N++  +   A + L A
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  170 bits (432), Expect = 2e-50
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             +      L+L  N++T +       L+NL  L L++N+I+ I  G F     L +L L
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL--SLIEP 250
           S+N L  +P    K+L  L    ++ N+I+ +  + F GL+ + ++ +  N L  S IE 
Sbjct: 108 SKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
            +F+G+ KKL  + +    +T +PQ       +L +L L  N+I  ++    +GL+NL  
Sbjct: 165 GAFQGM-KKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAK 220

Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L L+ N +  +     A+ P L  L L+ N +  V P   +  
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  164 bits (418), Expect = 3e-48
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 10/244 (4%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
           D   L + N+ +  +++    ++ K L  L L  N+++++   + + L  L +L L  N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI--SALHSNAFQG 231
           +  + E   +   L +L + +N +  V       LN ++++ L  N +  S + + AFQG
Sbjct: 112 LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
           +  L  + I +  ++ I       L +    L+L GN++T+V   SL  L NL KL L  
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTE----LHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           N I+ ++ G      +L  L L +N+L  +P    A    +  + L  N+I  +    F 
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 352 GLEA 355
               
Sbjct: 285 PPGY 288

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  157 bits (399), Expect = 2e-45
 Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L++N + ++    F  L ++  L + N+ ++ +   + + +  KL+RL L  N+L  
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKNQLKE 114

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL--AVVPSPALKSLN 209
           +P+        L++L +  N I  + +  F G   +  ++L  N L  + + + A + + 
Sbjct: 115 LPEKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L  + +    I+ +       L  L +     NK++ ++  S KGL   L +L L  N 
Sbjct: 172 KLSYIRIADTNITTIPQGLPPSLTELHLD---GNKITKVDAASLKGL-NNLAKLGLSFNS 227

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA-- 327
           ++ V   SL+   +LR+L L +N++  +  G       +  + L +N +  I    F   
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 328 ----HLPLLNSLELDGNHIHT--VDPAAFSGL 353
                    + + L  N +    + P+ F  +
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  156 bits (396), Expect = 6e-45
 Identities = 61/259 (23%), Positives = 121/259 (46%), Gaps = 21/259 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L +N + K++   F  L  +  L +  + L  + E    +    L+ L +  NE+T+
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT----LQELRVHENEITK 135

Query: 153 VPQTSLSKLENLRKLELLHNRI--ALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
           V ++  + L  +  +EL  N +  + IE G F+G K L+ + ++  ++  +P     SL 
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L   +L+ NKI+ + + + +GL+ L  L +  N +S ++  S       L+ L+L  N+
Sbjct: 196 EL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNK 251

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDF------EGLHNLDSLVLAHNQLRT--I 321
           L +VP   L+  + ++ + L +N I+ I   DF          +   + L  N ++   I
Sbjct: 252 LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 310

Query: 322 PPRVFAHLPLLNSLELDGN 340
            P  F  + +  +++L   
Sbjct: 311 QPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  111 bits (280), Expect = 3e-28
 Identities = 42/211 (19%), Positives = 94/211 (44%), Gaps = 16/211 (7%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSL--AVVEESSLSSIGKKLKRLNLGGNEL 150
            L++  N + K+   +F GL+ +  + +  + L  + +E  +   + KKL  + +    +
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNI 183

Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
           T +PQ       +L +L L  N+I  ++    +G   L +L LS NS++ V + +L +  
Sbjct: 184 TTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE-----KKLKRLN 264
           HL  L+LN+NK+  +          ++++ +  N +S I  + F              ++
Sbjct: 241 HLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 265 LGGNEL--TRVPQTSLSKLENLRKLELLHNR 293
           L  N +    +  ++   +     ++L + +
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L+ +      L +VP+       +   L+L +N+I  I++GDF+ L NL +L+L +N++ 
Sbjct: 33  LRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            I P  FA L  L  L L  N +  +       L+
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 124

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  163 bits (415), Expect = 8e-48
 Identities = 68/223 (30%), Positives = 102/223 (45%), Gaps = 12/223 (5%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             I      L+L  N+++ + +     L++L  L L++N+I+ I E  F   + L +L +
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL--IEP 250
           S+N L  +P     SL  L    ++ N+I  +    F GL  +  + +  N L     EP
Sbjct: 110 SKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
            +F GL  KL  L +   +LT +P+        L +L L HN+I  IE  D      L  
Sbjct: 167 GAFDGL--KLNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRYSKLYR 221

Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L L HNQ+R I     + LP L  L LD N +  V PA    L
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDL 263

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  162 bits (412), Expect = 3e-47
 Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 11/246 (4%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
           D   L + N+ ++ + +     + + L  L L  N+++++ + + S L  L+KL +  N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKI--SALHSNAFQG 231
           +  I        +L +L +  N +  VP      L ++  + +  N +  S     AF G
Sbjct: 114 LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 232 LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
           L  L  L I E KL+ I  D  + L +    L+L  N++  +    L +   L +L L H
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLPETLNE----LHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           N+I +IE G    L  L  L L +N+L  +P      L LL  + L  N+I  V    F 
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 352 GLEAKV 357
            +   V
Sbjct: 286 PVGFGV 291

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  154 bits (390), Expect = 4e-44
 Identities = 70/272 (25%), Positives = 123/272 (45%), Gaps = 22/272 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L++N++ +L    F GL  +  L + N+ ++ + E + S + +KL++L +  N L  
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL-RKLQKLYISKNHLVE 116

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL--AVVPSPALKSLN 209
           +P    S L  LR   +  NRI  + +G F G + +  +++  N L  +     A   L 
Sbjct: 117 IPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L  L ++  K++ +  +  +   TL  L +  NK+  IE +       KL RL LG N+
Sbjct: 174 -LNYLRISEAKLTGIPKDLPE---TLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQ 228

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329
           +  +   SLS L  LR+L L +N+++ +  G    L  L  + L  N +  +    F  +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPV 287

Query: 330 ------PLLNSLELDGNHI--HTVDPAAFSGL 353
                    N + L  N +    V PA F  +
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  152 bits (387), Expect = 1e-43
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 20/258 (7%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L +N + K+    F  L  ++ L I  + L  +  +  SS    L  L +  N + +
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS----LVELRIHDNRIRK 137

Query: 153 VPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNH 210
           VP+   S L N+  +E+  N +     E G F+G  L  L +S+  L  +P    ++LN 
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE 197

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L   +L+HNKI A+          L  L +  N++ +IE  S   L   L+ L+L  N+L
Sbjct: 198 L---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKL 253

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH------NLDSLVLAHNQL--RTIP 322
           +RVP   L  L+ L+ + L  N I  +   DF  +         + + L +N +    + 
Sbjct: 254 SRVP-AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 323 PRVFAHLPLLNSLELDGN 340
           P  F  +    +++    
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 5e-17
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 88  SGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG 147
            GL + YL++    L  +   +   L    L + ++ +  +E   L     KL RL LG 
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETL--NELHLDHNKIQAIELEDLLRY-SKLYRLGLGH 226

Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKS 207
           N++  +   SLS L  LR+L L +N+++ +  G  + K L  + L  N++  V       
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 208 LN------HLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENK 244
           +       +   ++L +N +    +    F+ +     +     K
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L+ +      L  VP+       +   L+L +N I+ + + DF+GL +L +LVL +N++ 
Sbjct: 35  LRVVQCSDLGLKAVPKEISP---DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            I  + F+ L  L  L +  NH+  + P   S L 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  160 bits (407), Expect = 7e-47
 Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 7/225 (3%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE--EGDFEG-KALTQL 190
           + I     RL L  N+L  +P     KL  L KL L  N ++          G  +L  L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIE 249
           DLS N +  + S     L  L  L+  H+ +  +   + F  L  L  L I      +  
Sbjct: 84  DLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 250 PDSFKGLEKKLKRLNLGGN-ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
              F GL   L+ L + GN           ++L NL  L+L   ++  +    F  L +L
Sbjct: 143 NGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
             L ++HN   ++    +  L  L  L+   NHI T         
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  156 bits (397), Expect = 2e-45
 Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 7/235 (2%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR--VPQTSLSKLENLRKLELLH 171
               L + ++ L  +       + + L +L+L  N L+       S     +L+ L+L  
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPSP-ALKSLNHLLILNLNHNKISALHSNAFQ 230
           N +  +       + L  LD   ++L  +       SL +L+ L+++H       +  F 
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 231 GLDTLEILTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           GL +LE+L +  N       PD F  L + L  L+L   +L ++  T+ + L +L+ L +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP-LLNSLELDGNHIH 343
            HN    ++   ++ L++L  L  + N + T   +   H P  L  L L  N   
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  153 bits (389), Expect = 3e-44
 Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 10/218 (4%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
             +      LT VP    S   +  +LEL  N++  +  G F+    LT+L LS N L+ 
Sbjct: 10  TEIRCNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 200 --VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL-SLIEPDSFKGL 256
               S +      L  L+L+ N +  + S+ F GL+ LE L    + L  + E   F  L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAH 315
            + L  L++             + L +L  L++  N          F  L NL  L L+ 
Sbjct: 126 -RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            QL  + P  F  L  L  L +  N+  ++D   +  L
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  115 bits (290), Expect = 7e-30
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
           YL L  N +  ++   F GL+ + HL   +S+L  + E S+    + L  L++       
Sbjct: 82  YLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 153 VPQTSLSKLENLRKLELLHNR-IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
                 + L +L  L++  N          F   + LT LDLSQ  L  +   A  SL+ 
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
           L +LN++HN   +L +  ++ L++L++L    N +   +    +     L  LNL  N
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  158 bits (402), Expect = 3e-45
 Identities = 51/299 (17%), Positives = 114/299 (38%), Gaps = 29/299 (9%)

Query: 77  IQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLD------IRHLTIHNSSLAVVEE 130
           ++      K     + +       ++   T  ++FG +       + +T  NS++  +  
Sbjct: 3   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQ 189
           + L S  ++++ LNL   ++  +   + +    ++KL +  N I  +    F+    LT 
Sbjct: 63  ALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
           L L +N L+ +P     +   L  L++++N +  +  + FQ   +L+ L +  N+L+ ++
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 250 PDSFKGLEK---------------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
                 L                  ++ L+   N +  V          L  L+L HN +
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNL 238

Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
              +         L  + L++N+L  I    F  +  L  L +  N +  +       +
Sbjct: 239 --TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  151 bits (384), Expect = 1e-42
 Identities = 50/276 (18%), Positives = 108/276 (39%), Gaps = 26/276 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            +  +++ + KL   +      +  L +++  +  ++  + +     +++L +G N +  
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRY 107

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +P      +  L  L L  N ++ +  G F     LT L +S N+L  +     ++   L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 212 LILNLNHNKISALHSNAFQGLDT----------------LEILTIFENKLSLIEPDSFKG 255
             L L+ N+++ +  +    L                  +E L    N ++++       
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV- 226

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
              +L  L L  N LT      L     L +++L +N +  I    F  +  L+ L +++
Sbjct: 227 ---ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           N+L  +       +P L  L+L  NH+  V+     
Sbjct: 282 NRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  147 bits (373), Expect = 4e-41
 Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 27/279 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L    + ++  + F     I+ L +  +++  +      ++   L  L L  N+L+ 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSS 131

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +P+        L  L + +N +  IE+  F+   +L  L LS N L  V    + SL H 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

Query: 212 LI----------------LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
            +                L+ +HN I+ +       L    IL +  N L+  +      
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNNLT--DTAWLLN 246

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
               L  ++L  NEL ++      K++ L +L + +NR+  +     + +  L  L L+H
Sbjct: 247 Y-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSH 304

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           N L  +          L +L LD N I T+  +    L+
Sbjct: 305 NHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (334), Expect = 1e-35
 Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L +  N +  L   +F  +  +  L +  + L+ +      +   KL  L++  N L R
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLER 155

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-----------------KALTQLDLSQN 195
           +   +     +L+ L+L  NR+  ++                        A+ +LD S N
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215

Query: 196 SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
           S+ VV  P    L  L    L HN ++            L  + +  N+L  I    F  
Sbjct: 216 SINVVRGPVNVELTIL---KLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
           + ++L+RL +  N L  +       +  L+ L+L HN +  +E         L++L L H
Sbjct: 271 M-QRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDH 327

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIH 343
           N + T+       L  L    L  N   
Sbjct: 328 NSIVTLKLSTHHTLKNLT---LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (326), Expect = 2e-34
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 23/225 (10%)

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG------KALTQLDLSQNSLAVVPSPAL 205
           R P+                  I +  +  + G           +    +++  +P+  L
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
            S   + +LNLN  +I  + + AF    T++ L +  N +  + P  F+ +   L  L L
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVL 124

Query: 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
             N+L+ +P+        L  L + +N +  IE+  F+   +L +L L+ N+L  +   +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

Query: 326 FAHLPLLN----------------SLELDGNHIHTVDPAAFSGLE 354
              L   N                 L+   N I+ V       L 
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 229

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 2e-30
 Identities = 62/267 (23%), Positives = 109/267 (40%), Gaps = 30/267 (11%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L  N+L  L   IF     +  L++ N++L  +E+ +  +    L+ L L  N LT 
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTH 179

Query: 153 VPQ----------------TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS 196
           V                  ++L+    + +L+  HN I ++         LT L L  N+
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE--LTILKLQHNN 237

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           L    +  L +   L+ ++L++N++  +  + F  +  LE L I  N+L  +     + +
Sbjct: 238 L--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
              LK L+L  N L  V + +  + + L  L L HN I  ++       H L +L L+HN
Sbjct: 295 -PTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 349

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIH 343
                  R       +    +D    H
Sbjct: 350 DWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 13/96 (13%), Positives = 31/96 (32%)

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
              +++               L N + +   ++ +  +     +    ++ L L   Q+ 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
            I    FA+   +  L +  N I  + P  F  +  
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (401), Expect = 1e-43
 Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 10/293 (3%)

Query: 70  EFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVV 128
            F D      +    +    + +  + L+ +    ++   F     ++ L +  + L+ +
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 129 EESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KA 186
               +      LK+L L  N+   + Q S S   +L  L +  N   L +  G  E  + 
Sbjct: 294 PSGLVGL--STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 187 LTQLDLSQNSLAVVP--SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
           L +LDLS + +      +  L++L+HL  LNL++N+  +L + AF+    LE+L +   +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA---LIEEGD 301
           L + +  S       LK LNL  + L    +     L  L+ L L  N      + +   
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            + L  L+ LVL+   L +I    F  L ++N ++L  N + +    A S L+
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (372), Expect = 1e-39
 Identities = 59/266 (22%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L+   N LP +    F  L ++  L +    +  + E +  S   +L  L L  N L  
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANPLIF 95

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           + +T+LS  + L+ L  +   I+ I+       K L  L L  N ++ +  P       L
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTI--FENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            +L+  +N I  L       L     L++    N ++ IEP +F     +        N 
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDSLVLAHNQLRTIPPRVFA 327
           L        S +++L            I    FEGL   +++S+ L  +    I    F 
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGL 353
               L  L+L   H+  + P+   GL
Sbjct: 276 CFSGLQELDLTATHLSEL-PSGLVGL 300

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  143 bits (362), Expect = 3e-38
 Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL-TR 152
            L L   +L +L   +     ++ L +  +    + + S S+    L  L++ GN     
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE 340

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DLSQNSLAVVPSPALKSLN 209
           +    L  LENLR+L+L H+ I   +  + + + L+ L   +LS N    + + A K   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 210 HLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
            L +L+L   ++    + + FQ L  L++L +  + L +     F GL   L+ LNL GN
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL-PALQHLNLQGN 459

Query: 269 ELTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
              +      + L+ L +LE+L      ++ I++  F  L  ++ + L+HN+L +     
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 326 FAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            +HL  +  L L  NHI  + P+    L
Sbjct: 520 LSHLKGI-YLNLASNHISIILPSLLPIL 546

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  138 bits (349), Expect = 2e-36
 Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 10/258 (3%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L  N    L          + HL+I  ++  +   +      + L+ L+L  +++  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 153 VPQT--SLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSP-ALKSL 208
                  L  L +L+ L L +N    ++   F+    L  LDL+   L V  +    ++L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS---LIEPDSFKGLEKKLKRLNL 265
           + L +LNL+H+ +       F GL  L+ L +  N      + + +S + L  +L+ L L
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVL 483

Query: 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
              +L+ + Q + + L+ +  ++L HNR+          L  +  L LA N +  I P +
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 326 FAHLPLLNSLELDGNHIH 343
              L    ++ L  N + 
Sbjct: 543 LPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  136 bits (345), Expect = 5e-36
 Identities = 51/250 (20%), Positives = 85/250 (34%), Gaps = 31/250 (12%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
            ++    + L    N L  +  T+ S+L NL  L+L   +I  I E  F+    L  L L
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
           + N L  +   AL     L  L      IS++         TLE L +  N +S I+   
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL----------------------- 289
                +KLK L+   N +  + +  +S L+    L L                       
Sbjct: 149 GFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 290 ----LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIH 343
                 N + + +      + +L            I P VF  L  ++  S+ L  ++  
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 344 TVDPAAFSGL 353
            +    F   
Sbjct: 268 NISSNTFHCF 277

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 5e-31
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 4/165 (2%)

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
            +     L  +P     S   L     + N +  + +  F  L  L  L +   ++  I 
Sbjct: 17  YNCENLGLNEIPGTLPNSTECL---EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
            D+F+    +L  L L  N L  + +T+LS  + L+ L  +   I+ I+         L+
Sbjct: 74  EDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           SL L  N + +I          L  L+   N IH +     S L+
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (400), Expect = 3e-43
 Identities = 73/269 (27%), Positives = 115/269 (42%), Gaps = 11/269 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L HN L +L    F     +  L +  ++++ +E      +   LK LNL  NEL++
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQ 87

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +   + +   NL +L L+ N I  I+   F   K L  LDLS N L+         L +L
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 212 LILNLNHNKISALHSNAFQ--GLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
             L L++NKI AL S         +L+ L +  N++    P  F  +  +L  L L   +
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQ 206

Query: 270 LTRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEGLH--NLDSLVLAHNQLRTIPPR 324
           L       L        +  L   +++++      F GL   NL  L L++N L  +   
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 325 VFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            FA LP L    L+ N+I  +   +  GL
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  154 bits (391), Expect = 5e-42
 Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 18/278 (6%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L+HN L +L+   F     +  L + ++S+  ++ +      K L  L+L  N L+ 
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSS 135

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG---KALTQLDLSQNSLAVVPSPALKSLN 209
               +  +LENL++L L +N+I  ++  + +     +L +L+LS N +         ++ 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 210 HLLILNLNHNKISALHSNAFQ---GLDTLEILTIFENKLSLIEPDSFKGLEK-KLKRLNL 265
            L  L LN+ ++    +          ++  L++  ++LS     +F GL+   L  L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN--------- 316
             N L  V   S + L  L    L +N I  +      GL N+  L L  +         
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            L  I    F  L  L  L ++ N I  +    F+GL 
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (370), Expect = 4e-39
 Identities = 73/277 (26%), Positives = 127/277 (45%), Gaps = 17/277 (6%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIG---KKLKRLNLGGNE 149
           +L +  N++P +   +F GL ++++L++ NS  ++   ++ + +      L  LNL  N+
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 150 LTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEG-KALTQLDLSQNSLAVVPSPALKS 207
           ++++   + S L +L  L+L  N I   +   ++ G + + ++ LS N    +   +   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 208 LNHLLILNLNHNKISALHS--NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
           +  L  L L    +  + S  + FQ L  L IL +  N ++ I  D  +GL +KL+ L+L
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDL 511

Query: 266 GGNELTRV--------PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
             N L R+        P   L  L +L  L L  N    I    F+ L  L  + L  N 
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           L T+P  VF +   L SL L  N I +V+   F    
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (367), Expect = 1e-38
 Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 7/227 (3%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             +   +  LNL  N+L R+P  + ++   L  L++  N I+ +E    +    L  L+L
Sbjct: 21  DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
             N L+ +         +L  L+L  N I  + +N F     L  L +  N LS  +  +
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLEN--LRKLELLHNRIALIEEGDFEGLHNLDS 310
              L + L+ L L  N++  +    L    N  L+KLEL  N+I     G F  +  L  
Sbjct: 141 QVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 311 LVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSGLE 354
           L L + QL                + +L L  + + T     F GL+
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (346), Expect = 7e-36
 Identities = 67/283 (23%), Positives = 111/283 (39%), Gaps = 25/283 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD---IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
            L L +N +  L            ++ L + ++ +         +I  +L  L L   +L
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQL 207

Query: 151 TRVPQTSLSKLENLRKLELL---HNRIALIEEGDFEG---KALTQLDLSQNSLAVVPSPA 204
                  L        +  L   +++++      F G     LT LDLS N+L VV + +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILT---------IFENKLSLIEPDSFKG 255
              L  L    L +N I  L S++  GL  +  L          I    L  I+  SF+ 
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGLHN--LDSL 311
           L K L+ LN+  N++  +     + L NL+ L L ++  +L  +    F  L +  L  L
Sbjct: 328 L-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAAFSGL 353
            L  N++  I    F+ L  L  L+L  N I   +    + GL
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (331), Expect = 7e-34
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 29/216 (13%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
            +  +    +LT+VP    + +                          T L+L+ N L  
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNI--------------------------TVLNLTHNQLRR 39

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           +P+      + L  L++  N IS L     Q L  L++L +  N+LS +   +F      
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TN 98

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L  L+L  N + ++      K +NL  L+L HN ++  + G    L NL  L+L++N+++
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 320 TIPPRVFAHLPL--LNSLELDGNHIHTVDPAAFSGL 353
            +            L  LEL  N I    P  F  +
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (254), Expect = 8e-24
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 11/189 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIG-KKLKRLNLGGNELT 151
            + L +N   +LT   F  +  ++ L +   +L  V+ S       + L  L+L  N + 
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KALTQLDLSQNSLAVVPS 202
            +    L  LE L  L+L HN +A + +    G           L  L+L  N    +P 
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
              K L  L I++L  N ++ L ++ F    +L+ L + +N ++ +E   F    + L  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 263 LNLGGNELT 271
           L++  N   
Sbjct: 614 LDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (253), Expect = 1e-23
 Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 25/270 (9%)

Query: 94  YLKLRHNNL-PKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
            L L  N +  +LTG  + GL+ I  + +  +    +  +S + +   L+RL L    L 
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV-PSLQRLMLRRVALK 467

Query: 152 RVPQ--TSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA---- 204
            V    +    L NL  L+L +N IA I +   EG + L  LDL  N+LA +   A    
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 205 ----LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
               LK L+HL ILNL  N    +    F+ L  L+I+ +  N L+ +    F      L
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ-VSL 586

Query: 261 KRLNLGGNELTRVPQTSLSK-LENLRKLELLHNRIALIEEGDFEGLHNL-DSLVLAHNQL 318
           K LNL  N +T V +        NL +L++  N      +   E +    + +   H  +
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF----DCTCESIAWFVNWINETHTNI 642

Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
             +      + P        G  +   D +
Sbjct: 643 PELSSHYLCNTP----PHYHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
           + E+      KL+ +  D    +      LNL  N+L R+P  + ++   L  L++  N 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNI----TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           I+ +E    + L  L  L L HN+L  +  + FA    L  L L  N I  +    F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  148 bits (375), Expect = 1e-42
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 8/207 (3%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
            K L+L  N L  +   S      L+ L+L    I  IE+G ++    L+ L L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL-SLIEPDSFKGLE 257
            +   A   L+ L  L      +++L +     L TL+ L +  N + S   P+ F  L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHNLDSLVL 313
             L+ L+L  N++  +  T L  L  +      L+L  N +  I+ G F+ +  L  L L
Sbjct: 150 N-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 207

Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGN 340
             NQL+++P  +F  L  L  + L  N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  138 bits (351), Expect = 5e-39
 Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 11/213 (5%)

Query: 147 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAL 205
                ++P  +L    + + L+L  N +  +    F     L  LDLS+  +  +   A 
Sbjct: 16  ELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
           +SL+HL  L L  N I +L   AF GL +L+ L   E  L+ +E      L K LK LN+
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNV 131

Query: 266 GGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLD----SLVLAHNQLRT 320
             N +         S L NL  L+L  N+I  I   D   LH +     SL L+ N +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           I P  F  +  L  L LD N + +V    F  L
Sbjct: 192 IQPGAFKEIR-LKELALDTNQLKSVPDGIFDRL 223

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  134 bits (339), Expect = 3e-37
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
              LDLS N L  + S +  S   L +L+L+  +I  +   A+Q L  L  L +  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGL 305
            +   +F GL   L++L      L  +    +  L+ L++L + HN I +      F  L
Sbjct: 90  SLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLL----NSLELDGNHIHTVDPAAFSGLE 354
            NL+ L L+ N++++I       L  +     SL+L  N ++ + P AF  + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  116 bits (294), Expect = 1e-30
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 10/206 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L  N L  L  + FF   +++ L +    +  +E+ +  S+   L  L L GN +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQS 90

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSP-ALKSLNH 210
           +   + S L +L+KL  +   +A +E       K L +L+++ N +     P    +L +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEI----LTIFENKLSLIEPDSFKGLEKKLKRLNLG 266
           L  L+L+ NKI +++    + L  + +    L +  N ++ I+P +FK +  +LK L L 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALD 208

Query: 267 GNELTRVPQTSLSKLENLRKLELLHN 292
            N+L  VP     +L +L+K+ L  N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  151 bits (383), Expect = 3e-41
 Identities = 51/302 (16%), Positives = 114/302 (37%), Gaps = 29/302 (9%)

Query: 74  NQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLD------IRHLTIHNSSLAV 127
              ++      K     + +       ++   T  ++FG +       + +T  NS++  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 128 VEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KA 186
           +  + L S  ++++ LNL   ++  +   + +    ++KL +  N I  +    F+    
Sbjct: 66  LPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
           LT L L +N L+ +P     +   L  L++++N +  +  + FQ   +L+ L +  N+L+
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 247 LIEPDSFKGLEK---------------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLH 291
            ++      L                  ++ L+   N +  V          L  L+L H
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV---ELTILKLQH 241

Query: 292 NRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           N +   +         L  + L++N+L  I    F  +  L  L +  N +  +      
Sbjct: 242 NNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ 298

Query: 352 GL 353
            +
Sbjct: 299 PI 300

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  147 bits (373), Expect = 7e-40
 Identities = 50/276 (18%), Positives = 108/276 (39%), Gaps = 26/276 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            +  +++ + KL   +      +  L +++  +  ++  + +     +++L +G N +  
Sbjct: 55  IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRY 113

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +P      +  L  L L  N ++ +  G F     LT L +S N+L  +     ++   L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 212 LILNLNHNKISALHSNAFQGLDT----------------LEILTIFENKLSLIEPDSFKG 255
             L L+ N+++ +  +    L                  +E L    N ++++       
Sbjct: 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV- 232

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
              +L  L L  N LT      L     L +++L +N +  I    F  +  L+ L +++
Sbjct: 233 ---ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           N+L  +       +P L  L+L  NH+  V+     
Sbjct: 288 NRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  142 bits (360), Expect = 4e-38
 Identities = 58/279 (20%), Positives = 109/279 (39%), Gaps = 27/279 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L    + ++  + F     I+ L +  +++  +      ++   L  L L  N+L+ 
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSS 137

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           +P+        L  L + +N +  IE+  F+   +L  L LS N L  V    + SL H 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

Query: 212 LI----------------LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
            +                L+ +HN I+ +       L  L++        +L +      
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL-----QHNNLTDTAWLLN 252

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
               L  ++L  NEL ++      K++ L +L + +NR+  +     + +  L  L L+H
Sbjct: 253 Y-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSH 310

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           N L  +          L +L LD N I T+  +    L+
Sbjct: 311 NHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  130 bits (327), Expect = 1e-33
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 23/229 (10%)

Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG------KALTQLDLSQNSLAVVP 201
           N   R P+                  I +  +  + G           +    +++  +P
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
           +  L S   + +LNLN  +I  + + AF    T++ L +  N +  + P  F+ +   L 
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLT 126

Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
            L L  N+L+ +P+        L  L + +N +  IE+  F+   +L +L L+ N+L  +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 322 PPRVFAHL----------------PLLNSLELDGNHIHTVDPAAFSGLE 354
              +   L                  +  L+   N I+ V       L 
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (268), Expect = 8e-26
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 6/167 (3%)

Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQG-----LDTLEILTIFENKLS 246
              N     P       N           I     + + G     L+  +I+T   + + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            +         ++++ LNL   ++  +   + +    ++KL +  N I  +    F+ + 
Sbjct: 65  KLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            L  LVL  N L ++P  +F + P L +L +  N++  ++   F   
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 5e-21
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 4/143 (2%)

Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE----KKLKRLNLGGNEL 270
              +N             +       ++  + +   D + G E       K +    + +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
            ++P   L     +  L L   +I  I+   F   H +  L +  N +R +PP VF ++P
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 331 LLNSLELDGNHIHTVDPAAFSGL 353
           LL  L L+ N + ++    F   
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNT 146

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 12/177 (6%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L   HN++  + G +   L    L + +++L   + + L +    L  ++L  NEL ++
Sbjct: 215 ELDASHNSINVVRGPVNVEL--TILKLQHNNL--TDTAWLLNY-PGLVEVDLSYNELEKI 269

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
                 K++ L +L + +NR+  +         L  LDLS N L  V        + L  
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLEN 328

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L L+HN I  L  +       L+ LT+  N       +S + L + + R  +   + 
Sbjct: 329 LYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD---CNSLRALFRNVARPAVDDADQ 379

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  138 bits (349), Expect = 9e-39
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 5/203 (2%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
               ++    +LT +P    +   + +KL+L  N+++ +    F     L  L L+ N L
Sbjct: 17  NKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +P+   K L +L  L +  NK+ AL    F  L  L  L +  N+L  + P  F  L 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL- 132

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
            KL  L+LG NEL  +P+    KL +L++L L +N++  + EG F+ L  L +L L +NQ
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 318 LRTIPPRVFAHLPLLNSLELDGN 340
           L+ +P   F  L  L  L+L  N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  128 bits (324), Expect = 4e-35
 Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 1/169 (0%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
             +LDL  N L+ +PS A   L  L +L LN NK+  L +  F+ L  LE L + +NKL 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            +    F  L   L  L L  N+L  +P      L  L  L L +N +  + +G F+ L 
Sbjct: 99  ALPIGVFDQL-VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           +L  L L +NQL+ +P   F  L  L +L+LD N +  V   AF  LE 
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  122 bits (307), Expect = 1e-32
 Identities = 56/165 (33%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 191 DLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLI 248
           D S   L  +PS  PA         L+L  NK+S+L S AF  L  L +L + +NKL  +
Sbjct: 22  DCSSKKLTAIPSNIPA-----DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76

Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
               FK L K L+ L +  N+L  +P     +L NL +L L  N++  +    F+ L  L
Sbjct: 77  PAGIFKEL-KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
             L L +N+L+++P  VF  L  L  L L  N +  V   AF  L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           +   L L  N+L ++P + F  L  L  L L+ N + T+    F  L+ 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 1e-38
 Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 15/258 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
             K+  ++L +    +     +++ L +  + L+ +  + L+    KL+ LNL  N L  
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYE 72

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
                L  L  LR L+L +N +  +  G     ++  L  + N+++ V     +   ++ 
Sbjct: 73  TL--DLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNI- 125

Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
              L +NKI+ L          ++ L +  N++  +           L+ LNL  N +  
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
           V          L+ L+L  N++A +   +F+    +  + L +N+L  I          L
Sbjct: 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNL 239

Query: 333 NSLELDGNHIHTVDPAAF 350
              +L GN  H      F
Sbjct: 240 EHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (328), Expect = 2e-35
 Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 16/218 (7%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
            + K   +  + L +   +      N+++L+L  N ++ I   D      L  L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           L       L+SL+ L  L+LN+N +  L         ++E L    N +S +     +G 
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRGQG- 121

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-LHNLDSLVLAH 315
               K + L  N++T +          ++ L+L  N I  +   +       L+ L L +
Sbjct: 122 ---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           N +  +  +V      L +L+L  N +  +    F   
Sbjct: 179 NFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSA 213

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 9e-26
 Identities = 50/251 (19%), Positives = 96/251 (38%), Gaps = 26/251 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L L  N L +          +R L ++N+ +       L   G  ++ L+   N ++RV
Sbjct: 62  LLNLSSNVLYETLDLESLS-TLRTLDLNNNYV-----QELLV-GPSIETLHAANNNISRV 114

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAL-KSLNHL 211
                S+ +  + + L +N+I ++ + D      +  LDL  N +  V    L  S + L
Sbjct: 115 S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
             LNL +N I  +          L+ L +  NKL+ +    F+     +  ++L  N+L 
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSA-AGVTWISLRNNKLV 227

Query: 272 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
            + + +L   +NL   +L  N               L      + +++T+  +    L  
Sbjct: 228 LIEK-ALRFSQNLEHFDLRGNGFHCG---------TLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 332 LNSLELDGNHI 342
            N  E     +
Sbjct: 278 QNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
            Q  +  +I  + ++ L        +     +K L+L GN L+++    L+    L  L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
           L  N +      D E L  L +L L +N ++ +        P + +L    N+I  V  +
Sbjct: 65  LSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS 117

Query: 349 AFSGLE 354
              G +
Sbjct: 118 RGQGKK 123

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 7/147 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
           YL L+ N +  +           + HL +  + +  V+   + +   KLK L+L  N+L 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLA 204

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHL 211
            +          +  + L +N++ LIE+     + L   DL  N              + 
Sbjct: 205 FMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQ 262

Query: 212 LILNLNHNKISALHSNAFQGLDTLEIL 238
            +  +    +  L     +      + 
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLG 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  139 bits (353), Expect = 1e-38
 Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 35/254 (13%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
           S + + +K L+L  N +T +  + L +  NL+ L L  N I  IEE  F    +L  LDL
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTIFEN-KLSLIEP 250
           S N L+ + S   K L+ L  LNL  N    L  ++ F  L  L+IL +      + I+ 
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
             F GL   L+ L +  ++L      SL  ++N+  L L   +  L+ E   +   +++ 
Sbjct: 168 KDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 311 LVLAHNQLRTIP-------------------------------PRVFAHLPLLNSLELDG 339
           L L    L T                                  ++   +  L  LE   
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286

Query: 340 NHIHTVDPAAFSGL 353
           N + +V    F  L
Sbjct: 287 NQLKSVPDGIFDRL 300

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  139 bits (351), Expect = 2e-38
 Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 15/262 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L +N +  ++        +++ L + ++ +  +EE S SS+G  L+ L+L  N L+ 
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHLDLSYNYLSN 114

Query: 153 VPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQN-SLAVVPSPALKSLN 209
           +  +    L +L  L LL N    L E   F     L  L +    +   +       L 
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L  L ++ + + +    + + +  +  L +   +  L+           ++ L L   +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTD 233

Query: 270 LTRVPQTSLS--------KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
           L     + LS        K    R +++    +  + +     +  L  L  + NQL+++
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRNQLKSV 292

Query: 322 PPRVFAHLPLLNSLELDGNHIH 343
           P  +F  L  L  + L  N   
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  137 bits (346), Expect = 1e-37
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 5/213 (2%)

Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
                 L  +P         ++ L+L +NRI  I   D +    L  L L+ N +  +  
Sbjct: 37  KGSSGSLNSIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
            +  SL  L  L+L++N +S L S+ F+ L +L  L +  N    +   S      KL+ 
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 263 LNLGGNE-LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
           L +G  +  T++ +   + L  L +LE+  + +   E    + + N+  L+L   Q   +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 322 PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
                     +  LEL    + T   +  S  E
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  139 bits (353), Expect = 7e-38
 Identities = 71/289 (24%), Positives = 120/289 (41%), Gaps = 30/289 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSL--AVVEESSLSSIGKKLKRLNLGGNEL 150
            LKL +N   +L    F GL ++  LT+   +L  AV+  +    +   L+ L L  N +
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNI 141

Query: 151 TRV-PQTSLSKLENLRKLELLHNRIALIEEGDF---EGKALTQLDLSQNSLAVVPSPALK 206
            ++ P +    +     L+L  N++  I E D    +GK  T L LS  +L  +    L 
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 207 S--------LNHLLILNLNHNKISALHSNAFQGLDTLEIL-------------TIFENKL 245
                       +  L+L+ N      +  F        +             +      
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 246 SLIEPDSFKGLEK-KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
              +  +FKGLE   +K  +L  +++  + ++  S   +L +L L  N I  I++  F G
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L +L  L L+ N L +I  R+F +L  L  L+L  NHI  +   +F GL
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  133 bits (336), Expect = 2e-35
 Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 28/274 (10%)

Query: 94  YLKLRHNNLPKLT-GFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKK-LKRLNLGGNEL 150
            L LR NN+ K+     F  +     L +  + +  + E  L +   K    L L    L
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192

Query: 151 TRVPQTSLS--------KLENLRKLELLHNRIALIEEGDFEGK------ALTQLDLSQNS 196
             + +  L         K  ++  L+L  N         F             L  S N 
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 197 LAVVPSPALKSL----------NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
            +       K            + +   +L+ +KI AL  + F     LE LT+ +N+++
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            I+ ++F GL   L +LNL  N L  +       L+ L  L+L +N I  + +  F GL 
Sbjct: 313 KIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           NL  L L  NQL+++P  +F  L  L  + L  N
Sbjct: 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  128 bits (324), Expect = 1e-33
 Identities = 55/290 (18%), Positives = 107/290 (36%), Gaps = 31/290 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
           Y+ L  N++ +L    F  L D++ L +   +  +V  ++       L  L L  N+  +
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 153 VPQTSLSKLENLRKLELLHNRI--ALIEEGDFEG-KALTQLDLSQNSLA-VVPSPALKSL 208
           +   + + L NL  L L    +  A++    F+   +L  L L  N++  + P+    ++
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLE----------ILTIFENKLSLIEPDSFKGLEK 258
               +L+L  NK+ ++                      +  + E  L   +  +      
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-T 212

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELL-------------HNRIALIEEGDFEGL 305
            +  L+L GN                 K++ L             H      +   F+GL
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272

Query: 306 H--NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
               + +  L+ +++  +   VF+H   L  L L  N I+ +D  AF GL
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  119 bits (299), Expect = 3e-30
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 27/243 (11%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KALTQLDLSQNSL 197
           +  ++L  N +  + +TS S+L++L+ L++      L I    F G  +L  L L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 198 AVVPSPALKSLNHLLILNLNHNKI--SALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
             + + A   L +L +L L    +  + L  N F+ L +LE+L + +N +  I+P SF  
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL----------HNRIALIEEGDFEGL 305
             ++   L+L  N++  + +  L   +      L              +   + G+    
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE-------------LDGNHIHTVDPAAFSG 352
            ++ +L L+ N  +    + F        ++                 +    D   F G
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 353 LEA 355
           LEA
Sbjct: 272 LEA 274

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  116 bits (293), Expect = 2e-29
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 20/222 (9%)

Query: 147 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSP-A 204
              L +VP+       ++  ++L  N IA + E  F   + L  L + Q +  +V     
Sbjct: 19  NRGLHQVPELP----AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL--SLIEPDSFKGLEKKLKR 262
            + L+ L+IL L++N+   L + AF GL  LE+LT+ +  L  +++  + FK L   L+ 
Sbjct: 75  FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEM 133

Query: 263 LNLGGNELTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEGLH--NLDSLVLAHNQLR 319
           L L  N + ++ P +    +     L+L  N++  I E D       +   L L+   L+
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 320 TIPPR--------VFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            +                  + +L+L GN         F   
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 2e-26
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 11/174 (6%)

Query: 188 TQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
                    L  VP  PA     H+  ++L+ N I+ L+  +F  L  L+ L + +    
Sbjct: 13  YNAICINRGLHQVPELPA-----HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67

Query: 247 L-IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI--ALIEEGDFE 303
           L I  ++F+GL   L  L L  N+  ++   + + L NL  L L    +  A++    F+
Sbjct: 68  LVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 304 GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356
            L +L+ LVL  N ++ I P   F ++   + L+L  N + ++        + K
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 3e-24
 Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 24/237 (10%)

Query: 33  LLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLII 92
           L  +    L   +   P    S     +  NG            I  T       S    
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 93  FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
                 H N      F F GL+   +                         +L  +++  
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKT----------------------CDLSKSKIFA 289

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHL 211
           + ++  S   +L +L L  N I  I++  F G   L +L+LSQN L  + S   ++L+ L
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
            +L+L++N I AL   +F GL  L+ L +  N+L  +    F  L   L+++ L  N
Sbjct: 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 405

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 2e-37
 Identities = 59/265 (22%), Positives = 95/265 (35%), Gaps = 14/265 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            + L   ++  L          + L+I    L       L      LK L L  N+ +  
Sbjct: 289 AMSLAGVSIKYLEDVPKH-FKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKGSIS 343

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG---KALTQLDLSQNSLAVVPSPALKSLNH 210
                  L +L  L+L  N ++      +      +L  LDLS N   ++ +     L  
Sbjct: 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEE 400

Query: 211 LLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
           L  L+  H+ +  +   +AF  L+ L  L I      +     F GL   L  L + GN 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNS 459

Query: 270 LTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
                     +   NL  L+L   ++  I  G F+ LH L  L ++HN L  +    +  
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
           L  L++L+   N I T         
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFP 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (334), Expect = 2e-34
 Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 19/274 (6%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            + L  N L  L  + F    +++ L +    +  +E+ +   +   L  L L GN +  
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQS 94

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA-LKSLNH 210
               S S L +L  L  +  ++A +E         L +L+++ N +     PA   +L +
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 211 LLILNLNHNKISALHSNAFQGL----DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLG 266
           L+ ++L++N I  +  N  Q L         L +  N +  I+  +F+G+  KL  L L 
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHELTLR 212

Query: 267 GNEL-TRVPQTSLSKLENLRKLELLHNR------IALIEEGDFEGLHNL--DSLVLAHNQ 317
           GN   + + +T L  L  L    L+         + + E    EGL ++  D   L +  
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
             +     F  L  ++++ L G  I  ++     
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (334), Expect = 2e-34
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 8/253 (3%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L +    L +        L    LT  N      ++ +L S    L  L+L  N L+  
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLT-MNKGSISFKKVALPS----LSYLDLSRNALSFS 365

Query: 154 PQTSLS--KLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSP-ALKSLNH 210
              S S     +LR L+L  N   ++       + L  LD   ++L  V    A  SL  
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           LL L++++          F GL +L  L +  N        +       L  L+L   +L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
            ++       L  L+ L + HN +  ++   +  L++L +L  + N++ T    +     
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 331 LLNSLELDGNHIH 343
            L    L  N + 
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (329), Expect = 9e-34
 Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 12/218 (5%)

Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
                 +L++VP    S   + + ++L  N + +++   F     L  LDLS+  +  + 
Sbjct: 16  YQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
             A   L+HL  L L  N I +    +F GL +LE L   E KL+ +E      L   LK
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL-ITLK 131

Query: 262 RLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD----SLVLAHN 316
           +LN+  N +         S L NL  ++L +N I  I   D + L        SL ++ N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAAFSGL 353
            +  I  + F  + L   L L GN   + +       L
Sbjct: 192 PIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNL 228

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  125 bits (316), Expect = 6e-32
 Identities = 52/232 (22%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             I    K ++L  N L  +   S S    L+ L+L    I  IE+  + G   L+ L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
           + N +      +   L  L  L     K+++L S     L TL+ L +  N +   +  +
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHNL 308
           +      L  ++L  N +  +    L  L         L++  N I  I++  F+G+  L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL 206

Query: 309 DSLVLAHNQLRT-IPPRVFAHLPLLNSLEL------DGNHIHTVDPAAFSGL 353
             L L  N   + I      +L  L+   L      D  ++   +P+   GL
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (302), Expect = 4e-30
 Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 7/233 (3%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG-KKLKRLNLGGNELTR 152
            L L  N        +     + +L +  ++L+     S S +G   L+ L+L  N    
Sbjct: 332 SLTLTMNKGSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 153 VPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
           +       LE L+ L+  H+ +  + E   F   + L  LD+S  +  +        L  
Sbjct: 391 MSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 211 LLILNLNHNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
           L  L +  N       SN F     L  L + + +L  I    F  L  +L+ LN+  N 
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLNMSHNN 508

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           L  +  +  ++L +L  L+   NRI   +        +L    L +N +  I 
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (298), Expect = 1e-29
 Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 22/274 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L      L  L  F    L  ++ L + ++ +   +  +  S    L  ++L  N +  
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 153 VPQTSLSKLENLR----KLELLHNRIALIEEGDFEGKALTQLDLSQNSL-AVVPSPALKS 207
           +    L  L         L++  N I  I++  F+G  L +L L  N   + +    L++
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227

Query: 208 LNHLLILNL------NHNKISALHSNAFQGLDTLEILTIF--ENKLSLIEPDSFKGLEKK 259
           L  L +  L      +   +     +  +GL  + I             +   F  L   
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL-AN 286

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           +  ++L G  +  +    + K    + L ++  ++          L  L SL L  N+  
Sbjct: 287 VSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGS 341

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
                    LP L+ L+L  N +      ++S L
Sbjct: 342 ISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  115 bits (289), Expect = 2e-28
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
                    L+ VP     S  +   ++L+ N +  L S +F     L+ L +   ++  
Sbjct: 14  ITYQCMDQKLSKVPDDIPSSTKN---IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           IE  ++ GL   L  L L GN +      S S L +L  L  +  ++A +E      L  
Sbjct: 71  IEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 308 LDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L  L +AHN + +   P  F++L  L  ++L  N+I T+       L
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
            +P ++ + ++        K+S +  +      + + + +  N L +++  SF     +L
Sbjct: 4   LNPCIEVVPNI-TYQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNF-SEL 58

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
           + L+L   E+  +   +   L +L  L L  N I     G F GL +L++LV    +L +
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 353
           +       L  L  L +  N IH+   PA FS L
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  136 bits (345), Expect = 2e-37
 Identities = 44/216 (20%), Positives = 84/216 (38%), Gaps = 9/216 (4%)

Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN-SLAVV 200
                +++T +P        N  +L  +  ++ +I++G F G   L ++++SQN  L V+
Sbjct: 14  FLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 201 PSPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
            +    +L  L  + +   N +  ++  AFQ L  L+ L I    +  +          +
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQ 129

Query: 260 LKRLNLGGN-ELTRVPQTSLSKL-ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
              L++  N  +  + + S   L      L L  N I  I    F G    +  +  +N 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L  +P  VF        L++    IH++       L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  136 bits (343), Expect = 3e-37
 Identities = 39/211 (18%), Positives = 84/211 (39%), Gaps = 4/211 (1%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLD 191
           S + +    L     +L  + + + S   +L K+E+  N +  +IE   F     L ++ 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 192 LSQ-NSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN-KLSLIE 249
           + + N+L  +   A ++L +L  L +++  I  L            +L I +N  +  IE
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
            +SF GL  +   L L  N +  +  ++ +  +        +N +  +    F G     
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
            L ++  ++ ++P     +L  L +      
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  118 bits (296), Expect = 1e-30
 Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 34/252 (13%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE-LTR 152
            L+     L  +    F G                           L+++ +  N+ L  
Sbjct: 34  ELRFVLTKLRVIQKGAFSGF------------------------GDLEKIEISQNDVLEV 69

Query: 153 VPQTSLSKLENLRKLELLH-NRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
           +     S L  L ++ +   N +  I    F+    L  L +S   +  +P         
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 211 LLILNLNHN-KISALHSNAFQGL-DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
            ++L++  N  I  +  N+F GL     IL + +N +  I   +F G  +  +      N
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNN 188

Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
            L  +P            L++   RI  +     E L  L +       L+ +P      
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEK 244

Query: 329 LPLLNSLELDGN 340
           L  L    L   
Sbjct: 245 LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  112 bits (283), Expect = 1e-28
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 8/171 (4%)

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK-LS 246
                 ++ +  +PS   ++   L        K+  +   AF G   LE + I +N  L 
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 247 LIEPDSFKGLEKKLKRLNL-GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
           +IE D F  L  KL  + +   N L  +   +   L NL+ L + +  I  + +      
Sbjct: 69  VIEADVFSNL-PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 306 HNLDSLVLAHN-QLRTIPPRVFAHLP-LLNSLELDGNHIHTVDPAAFSGLE 354
                L +  N  + TI    F  L      L L+ N I  +  +AF+G +
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 11/219 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTI-HNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
           YL + +  +  L             L I  N ++  +E +S   +  +   L L  N + 
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +  ++ +  +        +N +  +    F G      LD+S+  +  +PS  L++L  
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L   +  + K   L +   + L  L   ++           +F    +++  L+   N+ 
Sbjct: 228 LRARSTYNLK--KLPT--LEKLVALMEASLTYP----SHCCAFANWRRQISELHPICNKS 279

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
               +         ++  L  +  +    G        D
Sbjct: 280 ILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFD 318

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  134 bits (340), Expect = 3e-37
 Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 9/202 (4%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
              +N     LT +P        +   L L  N +             LTQL+L +  L 
Sbjct: 12  HLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
            +      +L  L  L+L+HN++ +L     Q L  L +L +  N+L+ +   + +GL  
Sbjct: 69  KLQ--VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL-G 124

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
           +L+ L L GNEL  +P   L+    L KL L +N +  +  G   GL NLD+L+L  N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 319 RTIPPRVFAHLPLLNSLELDGN 340
            TIP   F    LL    L GN
Sbjct: 185 YTIPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  122 bits (307), Expect = 2e-32
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
            T L LS+N L       L     L  LNL+  +++ L       L  L  L +  N+L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ 90

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            + P   + L   L  L++  N LT +P  +L  L  L++L L  N +  +  G      
Sbjct: 91  SL-PLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
            L+ L LA+N L  +P  +   L  L++L L  N ++T+    F
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  122 bits (307), Expect = 2e-32
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 7/167 (4%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
             +++  + +L  +P    K      IL+L+ N +             L  L +   +L+
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            ++      L   L  L+L  N+L  +P      L  L  L++  NR+  +  G   GL 
Sbjct: 69  KLQV--DGTL-PVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            L  L L  N+L+T+PP +    P L  L L  N++  +     +GL
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 23/172 (13%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE-----------------SSLSS 135
            L L  N L   +         +  L +  + L  ++                   SL  
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94

Query: 136 IGK---KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLD 191
           +G+    L  L++  N LT +P  +L  L  L++L L  N +  +  G       L +L 
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
           L+ N+L  +P+  L  L +L  L L  N +  +    F G   L    +  N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  139 bits (352), Expect = 1e-36
 Identities = 70/286 (24%), Positives = 121/286 (42%), Gaps = 26/286 (9%)

Query: 92  IFYLKLRHNNLPKLTGFIFFGLD---IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGN 148
           I       +N+       F GL    +RHL + +  +  +      ++ K LK LNL  N
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYN 300

Query: 149 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKS 207
           ++ ++   +   L+NL+ L L +N +  +   +F G   +  +DL +N +A++     K 
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 208 LNHLLILNLNHNKISALH-----------SNAFQGLDTL----EILTIFENKLSLIEPDS 252
           L  L  L+L  N ++ +H            N    L  +     ++ + EN+L  ++   
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIAL-----IEEGDFEGLH 306
           F      L+ L L  N  +        S+  +L +L L  N + L     +    FEGL 
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
           +L  L L HN L ++PP VF+HL  L  L L+ N +  +       
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (341), Expect = 3e-35
 Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 27/278 (9%)

Query: 94  YLKLRHNNL--PKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
            L+L    L    L    F  L  +  L +  + +  +           LK ++   N++
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 151 TRVPQTSLSKLE--NLRKLELLHNRIALIEEGDF-------EGKALTQLDLSQN------ 195
             V +  L  L+   L    L  N +      D+           L  LD+S N      
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220

Query: 196 ------SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLD--TLEILTIFENKLSL 247
                 +++   + +L   +H++      + I     N F GL   ++  L +    +  
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           +    F+ L K LK LNL  N++ ++   +   L+NL+ L L +N +  +   +F GL  
Sbjct: 281 LNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
           +  + L  N +  I  + F  L  L +L+L  N + T+
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  132 bits (334), Expect = 4e-34
 Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 30/283 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSI-GKKLKRLNLGGNEL 150
            L L  N +  L     FG    ++ +   ++ + +V E  L  + GK L   +L  N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 151 TRVPQTSLSKLEN------LRKLELLHNRIALIEEGDF-------------EGKALTQLD 191
                    K  N      L  L++  N   +   G+F                 +    
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 192 LSQNSLAVVPSPALKSLNH--LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
              +++          L    +  L+L+H  + +L+S  F+ L  L++L +  NK++ I 
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
            ++F GL   L+ LNL  N L  +  ++   L  +  ++L  N IA+I++  F+ L  L 
Sbjct: 307 DEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
           +L L  N L TI       +P +  + L GN + T+     + 
Sbjct: 366 TLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLTA 403

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  129 bits (325), Expect = 6e-33
 Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 28/287 (9%)

Query: 94  YLKLRHNNLP-KLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
            L+L     P  +    F  L ++R L + +S +  +   +   +   L  L L    L+
Sbjct: 52  LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FHLFELRLYFCGLS 110

Query: 152 R--VPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKS 207
              +       L+ L +L+L  N+I +L     F    +L  +D S N + +V    L+ 
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 208 L--NHLLILNLNHNKISALHSNAFQGLD------TLEILTIFENKLSLIEPDSFKG---- 255
           L    L   +L  N + +  S  +           LEIL +  N  ++    +F      
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 256 -------LEKKLKRLNLGGNELTRVPQTSLSKLE--NLRKLELLHNRIALIEEGDFEGLH 306
                  L   +     G + +    Q + + L   ++R L+L H  +  +    FE L 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           +L  L LA+N++  I    F  L  L  L L  N +  +  + F GL
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (311), Expect = 3e-31
 Identities = 57/241 (23%), Positives = 90/241 (37%), Gaps = 26/241 (10%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KALTQLDLSQNS 196
             +RL L  N +  V  +S   LE L+ LEL      L I++  F     L  LDL  + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 197 LAVVPSPALKSLNHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENKL-SLIEPDSF 253
           +  +   A + L HL  L L    +S   L    F+ L  L  L + +N++ SL    SF
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLE--NLRKLELLHNRIALIEEGDFEGLHN---- 307
             L   LK ++   N++  V +  L  L+   L    L  N +      D+    N    
Sbjct: 145 GKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 308 --LDSLVLAHNQLRTIPPRVFAH------------LPLLNSLELDGNHIHTVDPAAFSGL 353
             L+ L ++ N         F++               +       ++I   D   F+GL
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 354 E 354
            
Sbjct: 264 A 264

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (287), Expect = 5e-28
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 9/171 (5%)

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL-I 248
                 +L  VP    + LN    L L+ N I  + +++F  L+ L++L +      L I
Sbjct: 9   AFYRFCNLTQVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI--ALIEEGDFEGLH 306
           + ++F+ L   L+ L+LG +++  +   +   L +L +L L    +  A++++G F  L 
Sbjct: 65  DKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 307 NLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK 356
            L  L L+ NQ+R++     F  L  L S++   N I  V       L+ K
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.2 bits (229), Expect = 2e-20
 Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 32/266 (12%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE--------------SSLSSIGK 138
           Y+ L+ N++  +    F  L  ++ L + +++L  +                 +L  I  
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401

Query: 139 KLKRLNLGGNELTRVPQTS-LSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQN 195
               ++L  N L  +     L ++ +L+ L L  NR +            +L QL L +N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 196 SLAVV-----PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
            L +           + L+HL +L LNHN +++L    F  L  L  L++  N+L+++  
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGLHNLD 309
           +        L+ L++  N+L            +L  L++ HN+     E   F    N  
Sbjct: 522 NDLPA---NLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHT 575

Query: 310 SLVLAHN--QLRTIPPRVFAHLPLLN 333
           ++ +A     +  + P  F+ + L +
Sbjct: 576 NVTIAGPPADIYCVYPDSFSGVSLFS 601

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (343), Expect = 7e-36
 Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 4/217 (1%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
           +K L+L  N++T +    L    NL+ L L  +RI  IE   F    +L  LDLS N L+
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 199 VVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTI-FENKLSLIEPDSFKGL 256
            + S     L+ L  LNL  N    L  ++ F  L  L+ L I      S I    F GL
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
              L  L +    L      SL  + ++  L L  +  A + E   + L ++  L L   
Sbjct: 148 -TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            L            + + ++        +   +F+ L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (336), Expect = 6e-35
 Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 5/214 (2%)

Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVP 201
            +      T +P    +    ++ L+L  N+I  I  GD      L  L L  + +  + 
Sbjct: 10  CDGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
             A  SL  L  L+L+ N +S+L S+ F  L +L+ L +  N    +   S       L+
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 262 RLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
            L +G     + + +   + L +L +LE+    +   +    + + ++  L L  ++   
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           +       L  +  LEL   ++     +     E
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 2e-31
 Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 27/288 (9%)

Query: 82  TTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGK--- 138
                   L      L   +  +L   + + L++  +   + +L  + + + S       
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 139 -------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQL 190
                   ++RL++    L     T  S LE ++++ + ++++ L+     +  K+L  L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 191 DLSQN---SLAVVPSPALKSLNHLLILNLNHNKISAL--HSNAFQGLDTLEILTIFENKL 245
           DLS+N      +  S    +   L  L L+ N + ++         L  L  L I  N  
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
             + PDS +   +K++ LNL    +  V       LE    L++ +N +          L
Sbjct: 400 HPM-PDSCQWP-EKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNLDSF----SLFL 450

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
             L  L ++ N+L+T+P       P+L  +++  N + +V    F  L
Sbjct: 451 PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (299), Expect = 6e-30
 Identities = 40/282 (14%), Positives = 93/282 (32%), Gaps = 24/282 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L  N +  +         +++ L + +S +  +E  +  S+   L+ L+L  N L+ 
Sbjct: 30  SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSS 88

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGK--ALTQLDLS-QNSLAVVPSPALKSLN 209
           +  +    L +L+ L L+ N    +           L  L +    + + +       L 
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L  L +    +    S + + +  +  LT+  ++ + +       L   ++ L L    
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL-SSVRYLELRDTN 207

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLV----------------- 312
           L R   + L   E    ++ L  R +++ +  F  L  L   +                 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 313 -LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
               ++   +          +  L +   ++       +S L
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  118 bits (298), Expect = 9e-30
 Identities = 42/278 (15%), Positives = 98/278 (35%), Gaps = 20/278 (7%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG-NELT 151
           +L L  N+L  L+   F  L  +++L +  +    +  +SL      L+ L +G     +
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            + +   + L +L +LE+    +   +    +  + +  L L  +  A +       L+ 
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR-------- 262
           +  L L    ++    +     +    +     + S++  +SF  L K L+         
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 263 -LNLGGNELTRVPQTSLSKLENLRKLELL--------HNRIALIEEGDFEGLHNLDSLVL 313
             +   N L     +    +  L K+E +           +       +  L  +  + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
            ++++  +P     HL  L  L+L  N +        +
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (283), Expect = 1e-27
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 6/170 (3%)

Query: 186 ALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
           A    D    S   +PS    ++     L+L+ NKI+ +     +    L++L +  +++
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAAMKS---LDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG 304
           + IE D+F  L   L+ L+L  N L+ +  +    L +L+ L L+ N    L     F  
Sbjct: 63  NTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 305 LHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L NL +L + +      I    FA L  LN LE+    +      +   +
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 15/206 (7%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGK--KLKRLNLGGNEL 150
            + + ++ +  +       L  +  L +  + +      + +  G    L+ L L  N L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 151 TRVPQTS--LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL 208
             + +T   L  L+NL  L++  N    + +     + +  L+LS   + VV +   ++L
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433

Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
                L++++N + +        L  L+ L I  NKL  +   S       L  + +  N
Sbjct: 434 EV---LDVSNNNLDSFSLF----LPRLQELYISRNKLKTLPDASLF---PVLLVMKISRN 483

Query: 269 ELTRVPQTSLSKLENLRKLELLHNRI 294
           +L  VP     +L +L+K+ L  N  
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 2e-35
 Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 15/258 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
             K+  ++L +    +     +++ L +  + L+ +  + L+    KL+ LNL  N L  
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYE 72

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
                L  L  LR L+L +N +  +  G     ++  L  + N+++ V     +   ++ 
Sbjct: 73  TL--DLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNI- 125

Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
              L +NKI+ L          ++ L +  N++  +           L+ LNL  N +  
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLL 332
           V          L+ L+L  N++A +   +F+    +  + L +N+L  I          L
Sbjct: 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNL 239

Query: 333 NSLELDGNHIHTVDPAAF 350
              +L GN  H      F
Sbjct: 240 EHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (313), Expect = 4e-32
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 16/217 (7%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
           + K   +  + L +   +      N+++L+L  N ++ I   D      L  L+LS N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
                  L+SL+ L  L+LN+N +  L         ++E L    N +S +     +G  
Sbjct: 71  YET--LDLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSRGQG-- 121

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-LHNLDSLVLAHN 316
              K + L  N++T +          ++ L+L  N I  +   +       L+ L L +N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            +  +  +V      L +L+L  N +  +    F   
Sbjct: 180 FIYDVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSA 213

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (268), Expect = 7e-26
 Identities = 42/264 (15%), Positives = 86/264 (32%), Gaps = 10/264 (3%)

Query: 95  LKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           + L +N +  L          +++L +  + +  V  + L++    L+ LNL  N +  V
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
                     L+ L+L  N++A +         +T + L  N L ++   AL+   +L  
Sbjct: 185 K--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
            +L  N         F       + T+ +  +  +   + +         + G      +
Sbjct: 242 FDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEEC-TVPTLGHYGAYCCEDL 299

Query: 274 PQTSLSKLENLRKLELLHNRIALIE----EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329
           P     +L  L++ E         E    E + E       +     Q RT+  +V    
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 330 PLLNSLELDGNHIHTVDPAAFSGL 353
               +LE     +           
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAH 383

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 95.3 bits (237), Expect = 7e-22
 Identities = 34/253 (13%), Positives = 73/253 (28%), Gaps = 12/253 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT 151
           YL L+ N +  +           + HL +  + +  V+   + +   KLK L+L  N+L 
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLA 204

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHL 211
            +          +  + L +N++ LIE+     + L   DL  N              + 
Sbjct: 205 FMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQ 262

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK----KLKRLNLGG 267
            +  +    +  L     +      +          +       L      +   L+  G
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
           +E  R+           R+++ L  +   + +          +L      L         
Sbjct: 323 SETERLE-CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 328 HLPLLNSLELDGN 340
               L+       
Sbjct: 382 AHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 4e-19
 Identities = 33/267 (12%), Positives = 83/267 (31%), Gaps = 11/267 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           +L L++N +  + G + F   ++ L + ++ LA +     S+    +  ++L  N+L  +
Sbjct: 173 HLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSA--AGVTWISLRNNKLVLI 229

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
            + +L   +NL   +L  N        DF  K      +++ ++  +     +      +
Sbjct: 230 EK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 214 LNLNHNKISALHSNAFQGLDTL-----EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
            +        L +     L  L      +L+   ++   +E +       + + ++    
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA--RQREIDALKE 346

Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
           +   V      + +    LE     +             LD  +        +       
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQ 406

Query: 329 LPLLNSLELDGNHIHTVDPAAFSGLEA 355
            PL     +   +             A
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNA 433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
            Q  +  +I  + ++ L        +     +K L+L GN L+++    L+    L  L 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 348
           L  N +      D E L  L +L L +N ++ +        P + +L    N+I  V  +
Sbjct: 65  LSSNVLYETL--DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS 117

Query: 349 AFSGLE 354
              G +
Sbjct: 118 RGQGKK 123

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 7/215 (3%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           +  LR N     T   FF  + R  T+   ++  +   +           + G      +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE-CTVPTLGHYGAYCCEDL 299

Query: 154 PQTSLSKLENLRK-----LELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL 208
           P     +L  L++     L    +    +E          ++D  +     V        
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 209 NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
              + L      +    SN  +    L+           ++  + +    +L R  +   
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

Query: 269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303
           E   V Q    +   +R  ++  ++   + E +  
Sbjct: 420 EEMYVEQQ-SVQNNAIRDWDMYQHKETQLAEENAR 453

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  130 bits (329), Expect = 5e-35
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSN-AFQGLDTLEILTIFENK 244
             L  S+  L  VP   P+     +  +L+L+HN +S L +      L  L  L +  N 
Sbjct: 21  NILSCSKQQLPNVPQSLPS-----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
           L+ I  ++F  +   L+ L+L  N L  + +   S L+ L  L L +N I +++   FE 
Sbjct: 76  LNFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 305 LHNLDSLVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSGLEA 355
           +  L  L L+ NQ+   P  +      LP L  L+L  N +  +       L A
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  122 bits (307), Expect = 5e-32
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 29/207 (14%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE-EGDFEG-KALTQLDLSQNSLA 198
             L+    +L  VPQ SL        L+L HN ++ +  E        L  L LS N L 
Sbjct: 21  NILSCSKQQLPNVPQ-SLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
            + S A   + +L  L+L+ N +  L    F  L  LE+L ++ N + +++ ++F+ +  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-A 136

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
           +L++L L  N+++R P   +     L KL LL                      L+ N+L
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD---------------------LSSNKL 175

Query: 319 RTIPPRVFAHLPLL--NSLELDGNHIH 343
           + +P      LP    N L L  N + 
Sbjct: 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  121 bits (306), Expect = 8e-32
 Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 10/224 (4%)

Query: 140 LKRLNLGGNELTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL 197
              L+L  N L+R+  + + ++L NL  L L HN +  I    F     L  LDLS N L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +       L  L +L L +N I  +  NAF+ +  L+ L + +N++S    +  K   
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 258 K--KLKRLNLGGNELTRVPQTSLSKLENLRK--LELLHNRIA----LIEEGDFEGLHNLD 309
           K  KL  L+L  N+L ++P T L KL    K  L L +N +     L +         L 
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLS 220

Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           S++     L  +  +   ++  L+            +      L
Sbjct: 221 SVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTL 264

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 28/151 (18%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L L HN+L  ++   F  +                          L+ L+L  N L  +
Sbjct: 68  SLLLSHNHLNFISSEAFVPV------------------------PNLRYLDLSSNHLHTL 103

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPA---LKSLN 209
            +   S L+ L  L L +N I +++   FE    L +L LSQN ++  P         L 
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTI 240
            L++L+L+ NK+  L     Q L       +
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 34/141 (24%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           YL L  N+L  L  F+F  L                        + L+ L L  N +  V
Sbjct: 92  YLDLSSNHLHTLDEFLFSDL------------------------QALEVLLLYNNHIVVV 127

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG----KALTQLDLSQNSLAVVPSPALKSLN 209
            + +   +  L+KL L  N+I+       +       L  LDLS N L  +P   L+ L 
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 210 HLLILNLNHNKISALHSNAFQ 230
             +   L       LH+N  +
Sbjct: 188 AWVKNGLY------LHNNPLE 202

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  125 bits (317), Expect = 2e-34
 Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 8/214 (3%)

Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN-RIALIEEGDFEG-KALT 188
             + S+    + L L    L  +P  + S L N+ ++ +  +  +  +E   F     +T
Sbjct: 24  QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 189 QLDLSQN-SLAVVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTIFEN-KL 245
            +++    +L  +   ALK L  L  L + +  +            D   IL I +N  +
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEG 304
           + I  ++F+GL  +   L L  N  T V   + +    L  + L  N+ + +I++  F G
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGG 202

Query: 305 LHN-LDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
           +++    L ++   +  +P +   HL  L +   
Sbjct: 203 VYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  123 bits (310), Expect = 2e-33
 Identities = 38/223 (17%), Positives = 90/223 (40%), Gaps = 12/223 (5%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN-SL 197
            +   +   ++ R+P    S   + + L+L+   +  I    F     ++++ +S + +L
Sbjct: 13  EEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 198 AVVPSPALKSLNHLLILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
             + S +  +L+ +  + + + + ++ +  +A + L  L+ L IF   L +    +    
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 257 EKKLKRLNLGGN-ELTRVPQTSLSKLEN-LRKLELLHNRIALIEEGDFEGLHNLDSLVLA 314
                 L +  N  +T +P  +   L N    L+L +N    ++   F G   LD++ L 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLN 187

Query: 315 HNQ-LRTIPPRVFAHLP-LLNSLELDGNHIHTVDPAAFSGLEA 355
            N+ L  I    F  +    + L++    +  +       L+ 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIH---NSSLAVVEESSLSSIGKKLKRLNLGGNEL 150
           +L + +  L                 +    N  +  +  ++   +  +   L L  N  
Sbjct: 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

Query: 151 TRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEG--KALTQLDLSQNSLAVVPSPALKS 207
           T V   + +    L  + L  N+ + +I++  F G     + LD+SQ S+  +PS  L+ 
Sbjct: 169 TSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

Query: 208 LNHLLILNL 216
           L  L+  N 
Sbjct: 228 LKELIARNT 236

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (333), Expect = 2e-34
 Identities = 63/293 (21%), Positives = 112/293 (38%), Gaps = 14/293 (4%)

Query: 67  ILCEFTDNQKIQH-TMTTLKSKSGLIIFYLKLRHNNL-PKLTGFIFFGL-DIRHLTIHNS 123
           +L EF +   ++    + L+    L I   +L + +        +F  L ++   ++ + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 183
           ++  V++ S +      + L L   +  + P   L    +L++L    N+          
Sbjct: 293 TIERVKDFSYNF---GWQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEVDL 346

Query: 184 GKALTQLDLSQNSLAV--VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF 241
              L  LDLS+N L+     S +      L  L+L+ N +  + SN F GL+ LE L   
Sbjct: 347 PS-LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404

Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEG 300
            + L  +   S     + L  L++             + L +L  L++  N         
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 301 DFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            F  L NL  L L+  QL  + P  F  L  L  L +  N + +V    F  L
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  131 bits (332), Expect = 3e-34
 Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 14/252 (5%)

Query: 97  LRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQT 156
           L    + ++  F +     +HL + N          L S    LKRL    N+       
Sbjct: 289 LVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNAF-- 341

Query: 157 SLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DLSQNSLAVVPSPALKSLNHLLI 213
           S   L +L  L+L  N ++            T L   DLS N +  + S     L  L  
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEH 400

Query: 214 LNLNHNKISAL-HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
           L+  H+ +  +   + F  L  L  L I      +     F GL   L+ L + GN    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQE 459

Query: 273 -VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
                  ++L NL  L+L   ++  +    F  L +L  L +A NQL+++P  +F  L  
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 332 LNSLELDGNHIH 343
           L  + L  N   
Sbjct: 520 LQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 2e-33
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 15/233 (6%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
            ++    K L+L  N L  +   S      L+ L+L    I  IE+G ++    L+ L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL-SLIEPD 251
           + N +  +   A   L+ L  L      +++L +     L TL+ L +  N + S   P+
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHN 307
            F  L   L+ L+L  N++  +  T L  L  +      L+L  N +  I+ G F+ +  
Sbjct: 144 YFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 308 LDSLVLAHNQLR-TIPPRVFAHLPLLNSLEL------DGNHIHTVDPAAFSGL 353
           L  L L +N     +       L  L    L      +  ++   D +A  GL
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (289), Expect = 1e-28
 Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 5/167 (2%)

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
                 + +   +P     S  +   L+L+ N +  L S +F     L++L +   ++  
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           IE  +++ L   L  L L GN +  +   + S L +L+KL  +   +A +E      L  
Sbjct: 67  IEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 308 LDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           L  L +AHN +++   P  F++L  L  L+L  N I ++       L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (264), Expect = 3e-25
 Identities = 62/296 (20%), Positives = 104/296 (35%), Gaps = 40/296 (13%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L     NL  L  F    L  ++ L + ++ +   +     S    L+ L+L  N++  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 153 VPQTSLSKLENLR----KLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV-VPSPALKS 207
           +  T L  L  +      L+L  N +  I+ G F+   L +L L  N  ++ V    ++ 
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 208 LNHLLILNL------NHNKISALHSNAFQGLDTLEILTIFENKLSLIE---PDSFKGLEK 258
           L  L +  L      N   +     +A +GL  L I       L        D F  L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT- 282

Query: 259 KLKRLNLGGNELTRVP-------------------QTSLSKLENLRKLELLHNRIALIEE 299
            +   +L    + RV                    Q    KL++L++L    N+      
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-- 340

Query: 300 GDFEGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
                L +L+ L L+ N L       +       L  L+L  N + T+  + F GL
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGL 395

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (256), Expect = 4e-24
 Identities = 65/293 (22%), Positives = 102/293 (34%), Gaps = 39/293 (13%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L  N +  L    F GL  ++ L    ++LA +E   +  + K LK LN+  N +  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQS 138

Query: 153 VPQ-TSLSKLENLRKLELLHNRIALIEEGDFEG-----KALTQLDLSQNSLAVVPSPALK 206
                  S L NL  L+L  N+I  I   D             LDLS N +  +   A K
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 207 SLNHLLILNLNHNKISA-LHSNAFQGLDTLEILTIF------ENKLSLIEPDSFKGLEK- 258
            +  L  L L +N  S  +     QGL  LE+  +       E  L   +  + +GL   
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 259 KLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFE-------------- 303
            ++   L   +        L + L N+    L+   I  +++  +               
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 304 -----GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
                 L +L  L    N+           LP L  L+L  N +      + S
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQS 368

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (253), Expect = 9e-24
 Identities = 59/283 (20%), Positives = 100/283 (35%), Gaps = 24/283 (8%)

Query: 86  SKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
            +  L+   L L  N +  +    F  + +  LT+ N+  ++    +       L+   L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 146 GGNELTRVPQ---TSLSKLENLRKLELLHNRIALIEEGDFEG-------KALTQLDLSQN 195
              E            S LE L  L +   R+A ++    +          ++   L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 196 SLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFK 254
           ++  V          HL ++N    +   L       L +L+ LT   NK       S  
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLK------LKSLKRLTFTSNKGGNA--FSEV 344

Query: 255 GLEKKLKRLNLGGNELTRVPQTSLS--KLENLRKLELLHNRIALIEEGDFEGLHNLDSLV 312
            L   L+ L+L  N L+     S S     +L+ L+L  N +  +    F GL  L+ L 
Sbjct: 345 DL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402

Query: 313 LAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
             H+ L+ +    VF  L  L  L++   H        F+GL 
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (321), Expect = 1e-32
 Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 11/255 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           +L+L +    +        L     T  N       E  L S    L+ L+L  N L+  
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFT-SNKGGNAFSEVDLPS----LEFLDLSRNGLSFK 362

Query: 154 PQT--SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLA-VVPSPALKSLNH 210
                S     +L+ L+L  N +  +       + L  LD   ++L  +       SL +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS-LIEPDSFKGLEKKLKRLNLGGNE 269
           L+ L+++H       +  F GL +LE+L +  N       PD F  L + L  L+L   +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQ 481

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL 329
           L ++  T+ + L +L+ L + HN    ++   ++ L++L  L  + N + T   +   H 
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 330 P-LLNSLELDGNHIH 343
           P  L  L L  N   
Sbjct: 542 PSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (316), Expect = 4e-32
 Identities = 58/266 (21%), Positives = 92/266 (34%), Gaps = 14/266 (5%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
              L    + ++  F +     +HL + N          L S    LKRL    N+    
Sbjct: 286 SFSLVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKS----LKRLTFTSNKGGNA 340

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL---DLSQNSLAVVPSPALKSLNH 210
              S   L +L  L+L  N ++            T L   DLS N +  +       L  
Sbjct: 341 F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQ 397

Query: 211 LLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
           L  L+  H+ +  +   + F  L  L  L I      +     F GL   L+ L + GN 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNS 456

Query: 270 LTR-VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
                     ++L NL  L+L   ++  +    F  L +L  L ++HN   ++    +  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 329 LPLLNSLELDGNHIHTVDPAAFSGLE 354
           L  L  L+   NHI T          
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFP 542

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (301), Expect = 5e-30
 Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
            ++    K L+L  N L  +   S      L+ L+L    I  IE+G ++    L+ L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
           + N +  +   A   L+ L  L      +++L +     L TL+ L +  N +   +   
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNRIALIEEGDFEGLHNL 308
           +      L+ L+L  N++  +  T L  L  +      L+L  N +  I+ G F+ +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 309 DSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGN------HIHTVDPAAFSGL 353
             L L +N     +       L  L    L         ++   D +A  GL
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 2e-25
 Identities = 61/299 (20%), Positives = 104/299 (34%), Gaps = 33/299 (11%)

Query: 86  SKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
            +  L+   L L  N +  +    F  + +  LT+ N+  ++    +       L+   L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 146 GGNELT---RVPQTSLSKLENLRKLELLHNRIALIEE------GDFEG-KALTQLDLSQN 195
              E      + +   S LE L  L +   R+A ++         F     ++   L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 196 SL-AVVPSPALKSLNHLLILNLNHNKISALH----------------SNAFQGLDTLEIL 238
           ++  V          HL ++N    +   L                 + +   L +LE L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 239 TIFENKLSLIE--PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA- 295
            +  N LS       S  G    LK L+L  N +  +   +   LE L  L+  H+ +  
Sbjct: 353 DLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQ 410

Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFSGL 353
           + E   F  L NL  L ++H   R     +F  L  L  L++ GN       P  F+ L
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (252), Expect = 2e-23
 Identities = 58/276 (21%), Positives = 97/276 (35%), Gaps = 44/276 (15%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L L  N +  L    F GL                          L++L      L  +
Sbjct: 80  TLILTGNPIQSLALGAFSGL------------------------SSLQKLVAVETNLASL 115

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPALKSLNHL 211
               +  L+ L++L + HN I   +  ++      L  LDLS N +  +    L+ L+ +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 212 ----LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL-IEPDSFKGLEKKLKRLNLG 266
               L L+L+ N ++ +   AF+ +  L  LT+  N  SL +     +GL   L+   L 
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLV 233

Query: 267 GNELT---RVPQTSLSKLENLRKLELLHNRIALIEE------GDFEGLHNLDSLVLAHNQ 317
             E      + +   S LE L  L +   R+A ++         F  L N+ S  L    
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           +  +    F++      LEL               L
Sbjct: 294 IERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 6e-22
 Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 65/321 (20%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L     NL  L  F    L  ++ L + ++ +   +     S    L+ L+L  N++  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 153 VPQTSLSKLENLR----KLELLHNRIALIEEGDFEGKALTQLDLSQNSL----------- 197
           +  T L  L  +      L+L  N +  I+ G F+   L +L L  N             
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 198 --------------------AVVPSPALKSLNHLLILNLNHNKISALHSN---AFQGLDT 234
                                     AL+ L +L I       +     +    F  L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ------------------- 275
           +   ++    +  ++  S+       + L L   +  + P                    
Sbjct: 284 VSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 276 TSLSKLENLRKLELLHNRIALIEEGD--FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
            S   L +L  L+L  N ++          G  +L  L L+ N + T+    F  L  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399

Query: 334 SLELDGNHIHTVDPA-AFSGL 353
            L+   +++  +     F  L
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSL 420

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (305), Expect = 1e-31
 Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 23/257 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            L +  N +  ++       ++R L ++  ++     S +S +    K+  LNLG N   
Sbjct: 92  NLYIGTNKITDISALQNLT-NLRELYLNEDNI-----SDISPLANLTKMYSLNLGANHNL 145

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
               + LS +  L  L +  +++  +          L  L L+ N +  +    L SL  
Sbjct: 146 SDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTS 200

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L       N+I+ +       +  L  L I  NK++ + P     L  +L  L +G N++
Sbjct: 201 LHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQI 255

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
           + +   ++  L  L+ L +  N+I+ I       L  L+SL L +NQL      V   L 
Sbjct: 256 SDIN--AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 331 LLNSLELDGNHIHTVDP 347
            L +L L  NHI  + P
Sbjct: 312 NLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 4e-31
 Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 25/257 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            L +    +  + G  +   ++ +L ++ + +     + +S +    KL  L +G N++T
Sbjct: 48  KLVVAGEKVASIQGIEYLT-NLEYLNLNGNQI-----TDISPLSNLVKLTNLYIGTNKIT 101

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +   +L  L NLR+L L  + I+ I          +  L+L  N      SP L ++  
Sbjct: 102 DIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTG 156

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L  L +  +K+  +       L  L  L++  N++  I P     L   L       N++
Sbjct: 157 LNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQI 211

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
           T +    ++ +  L  L++ +N+I  +       L  L  L +  NQ+  I       L 
Sbjct: 212 TDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLT 265

Query: 331 LLNSLELDGNHIHTVDP 347
            L  L +  N I  +  
Sbjct: 266 KLKMLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (274), Expect = 2e-27
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 17/211 (8%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
           + + +L + G ++  +    +  L NL  L L  N+I  I          LT L +  N 
Sbjct: 44  ESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           +  +   AL++L +L  L LN + IS    +    L  +  L +  N   L +      +
Sbjct: 100 ITDI--SALQNLTNLRELYLNEDNIS--DISPLANLTKMYSLNLGANHN-LSDLSPLSNM 154

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
              L  L +  +++  V    ++ L +L  L L +N+I  I       L +L       N
Sbjct: 155 -TGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
           Q+  I P   A++  LNSL++  N I  + P
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (255), Expect = 1e-24
 Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 35/229 (15%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLA 198
              L      + ++     + L    +  L    +  ++ + +   +++T+L ++   +A
Sbjct: 2   AATLATLPAPINQI--FPDADLAEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVA 57

Query: 199 VVPSPALKSLNHLLILNLNHNKISA--------------LHSN------AFQGLDTLEIL 238
            +    ++ L +L  LNLN N+I+               + +N      A Q L  L  L
Sbjct: 58  SIQ--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115

Query: 239 TIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 298
            + E+ +S I P     L  K+  LNLG N       + LS +  L  L +  +++  + 
Sbjct: 116 YLNEDNISDISP--LANL-TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT 171

Query: 299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
                 L +L SL L +NQ+  I P   A L  L+      N I  + P
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 1e-22
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 21/229 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            L L  N+       +     + +LT+  S +       ++ I     L  L+L  N++ 
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-----KDVTPIANLTDLYSLSLNYNQIE 190

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +    L+ L +L       N+I  I          L  L +  N +  +    L +L+ 
Sbjct: 191 DIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQ 244

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L  L +  N+IS +  NA + L  L++L +  N++S I       L  +L  L L  N+L
Sbjct: 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV--LNNL-SQLNSLFLNNNQL 299

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
                  +  L NL  L L  N I  I       L  +DS   A+  ++
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 8e-16
 Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 20/183 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNEL 150
            L L +N +  ++      L  + + T + + +     + ++ +    +L  L +G N++
Sbjct: 181 SLSLNYNQIEDISPL--ASLTSLHYFTAYVNQI-----TDITPVANMTRLNSLKIGNNKI 233

Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
           T +    L+ L  L  LE+  N+I+ I     +    L  L++  N ++ +    L +L+
Sbjct: 234 TDLS--PLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDIS--VLNNLS 287

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L  L LN+N++         GL  L  L + +N ++ I P     L  K+   +     
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL-SKMDSADFANQV 344

Query: 270 LTR 272
           + +
Sbjct: 345 IKK 347

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (305), Expect = 2e-30
 Identities = 44/278 (15%), Positives = 103/278 (37%), Gaps = 28/278 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L   HN +  L    F     +  L +  + +  + E   +    +++ L    N+L  
Sbjct: 577 LLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFT-DQVEGLGFSHNKLKY 633

Query: 153 VPQT-SLSKLENLRKLELLHNRI------ALIEEGDFEGKALTQLDLSQNSLAVVPSPAL 205
           +P   +   +  +  ++  +N+I            D++G   + + LS N +   P+   
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 206 KSLNHLLILNLNHNKISALHSNA-------FQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
            + + +  + L++N ++++  N+       ++    L  + +  NKL+ +  D       
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL------IEEGDFEGLHNLDSLV 312
            L  +++  N  +  P T       L+   + H R A                 +L  L 
Sbjct: 754 YLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 313 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
           +  N +R +  ++    P L  L++  N   ++D  + 
Sbjct: 813 IGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSV 847

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (300), Expect = 8e-30
 Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 27/282 (9%)

Query: 95  LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
               +    +     +  L D+  + ++N          L  +  +L+ LN+  N     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISA 530

Query: 154 PQT---------SLSKLENLRKLELLHNRI-ALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
            Q                 ++   + +N +         +    L  LD   N +  + +
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA 590

Query: 203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKR 262
               +   L  L L++N+I  +  +     D +E L    NKL  I           +  
Sbjct: 591 --FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 263 LNLGGNELTRVPQTSLSKLE-----NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
           ++   N++    +     ++     N   + L +N I       F     + +++L++N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 318 LRTIP-------PRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
           + +IP          + +  LL +++L  N + ++     + 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (290), Expect = 2e-28
 Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 26/323 (8%)

Query: 50  HNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI 109
            +  +          L          +I+     +       +    L  + + +     
Sbjct: 356 THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415

Query: 110 FF----GLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELTRVPQTSLSKLEN 163
                  + ++   I N +  +       +I    KL+ +    +  T           +
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDN-----IAVD 468

Query: 164 LRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
                  + +    EE  +   K LT ++L            L  L  L  LN+  N+  
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528

Query: 223 ALHS---------NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           +            +       ++I  +  N L      +      KL  L+   N++  +
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH-LPLL 332
              +      L  L+L +N+I  I E        ++ L  +HN+L+ IP    A  + ++
Sbjct: 589 E--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

Query: 333 NSLELDGNHIHTVDPAAFSGLEA 355
            S++   N I +        ++ 
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDD 669

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.8 bits (233), Expect = 4e-21
 Identities = 35/252 (13%), Positives = 74/252 (29%), Gaps = 40/252 (15%)

Query: 94  YLKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSIG----KKLKRLNLGG 147
            L   HN L  +           +  +    + +     +   S+          + L  
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG--------KALTQLDLSQNSLAV 199
           NE+ + P    +    +  + L +N +  I E   +           LT +DL  N L  
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 200 VPSP-ALKSLNHLLILNLNHNKISALHSNAF-----QGLDTLEILTIFENKLSLIEPDSF 253
           +       +L +L  +++++N  S+  +        +            N++    P   
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802

Query: 254 KGLEK--------------------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
                                    +L  L++  N    +  TS+          LL+++
Sbjct: 803 TTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

Query: 294 IALIEEGDFEGL 305
              I   D  G+
Sbjct: 863 TQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 1e-20
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK--------ALTQL 190
           ++  L+L G         ++ +L  L+ L    +   +      + +           ++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
            +    + +     L   + L      + ++  +  ++   L   +I  +  N+++ I  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFI-S 441

Query: 251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDS 310
            + + L  KL+ +    +  T           +       + +    EE  +  L +L  
Sbjct: 442 KAIQRL-TKLQIIYFANSPFTYDN-----IAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 311 LVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 351
           + L +    T  P     LP L SL +  N   +       
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 11/172 (6%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
           +T L L+          A+  L  L +L+   +  +           T ++    ++++ 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH-----NRIALIEEGD 301
           +     F   +++L   +L  + + R P+    K ++   L+        NRI  I +  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA- 443

Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            + L  L  +  A++        V       +  +   N        ++S L
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-----ELSWSNL 490

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 19/180 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD--------IRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
            + L +N +  +        D        +  + +  + L  + +   ++    L  +++
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760

Query: 146 GGNELTRVPQTSLSKLENLRKLELLHNRIA-------LIEEGDFEGKALTQLDLSQNSLA 198
             N  +  P T       L+   + H R A           G     +L QL +  N + 
Sbjct: 761 SYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
            V       L  L   ++  N   ++   +        +  +  +K   I      G+E+
Sbjct: 820 KVDEKLTPQLYIL---DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  120 bits (302), Expect = 3e-30
 Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
            +  + NL    +T     + ++L ++ ++   ++ I  ++    +    +T+L L+ N 
Sbjct: 21  AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNK 76

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           L  +    L +L +L  L L+ NKI  L  ++ + L  L+ L++  N +S I       L
Sbjct: 77  LTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDING--LVHL 130

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             +L+ L LG N++T +  T LS+L  L  L L  N+I+ I      GL  L +L L+ N
Sbjct: 131 -PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 185

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            +  +     A L  L+ LEL             S L 
Sbjct: 186 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLV 221

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  112 bits (280), Expect = 2e-27
 Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 15/204 (7%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
             + ++    +++  V    +  L N+ KL L  N++  I+      K L  L L +N +
Sbjct: 43  NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKI 99

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             + S  LK L  L  L+L HN IS +  N    L  LE L +  NK++ I       L 
Sbjct: 100 KDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRL- 152

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
            KL  L+L  N+++ +    L+ L  L+ L L  N I+ +      GL NLD L L   +
Sbjct: 153 TKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 208

Query: 318 LRTIPPRVFAHLPLLNSLE-LDGN 340
               P    ++L + N+++  DG+
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (276), Expect = 7e-27
 Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 16/208 (7%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
           +         + ++            K  L    +      + E  ++ Q+  + + +  
Sbjct: 1   MGETITVSTPIKQI--FPDDAFAETIKDNLKKKSVTDAVTQN-ELNSIDQIIANNSDIKS 57

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           V    ++ L ++  L LN NK++ +       L  L  L + ENK+  +     K L KK
Sbjct: 58  VQ--GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDL-KK 110

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           LK L+L  N ++ +    L  L  L  L L +N+I  I       L  LD+L L  NQ+ 
Sbjct: 111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIS 166

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDP 347
            I P   A L  L +L L  NHI  +  
Sbjct: 167 DIVP--LAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (253), Expect = 7e-24
 Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
              L+  ++            I  +  +NS +      S+  I     + +L L GN+LT
Sbjct: 25  KDNLKKKSVTDAVTQNEL-NSIDQIIANNSDI-----KSVQGIQYLPNVTKLFLNGNKLT 78

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +    L+ L+NL  L L  N+I  +     +  K L  L L  N ++ +    L  L  
Sbjct: 79  DI--KPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQ 132

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L  L L +NKI+ +       L  L+ L++ +N++S I P    GL  KL+ L L  N +
Sbjct: 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHI 187

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
           + +   +L+ L+NL  LEL               L   +++      L T   
Sbjct: 188 SDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 4e-11
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 17/172 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNEL 150
           +L L  N +  L+      L  ++ L++ ++ +     S ++ +    +L+ L LG N++
Sbjct: 91  WLFLDENKIKDLSSL--KDLKKLKSLSLEHNGI-----SDINGLVHLPQLESLYLGNNKI 143

Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLN 209
           T +  T LS+L  L  L L  N+I+ I      G   L  L LS+N ++ +   AL  L 
Sbjct: 144 TDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR--ALAGLK 197

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
           +L +L L   +      N    L     +   +  L   E  S  G  +K  
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  116 bits (293), Expect = 6e-29
 Identities = 41/278 (14%), Positives = 101/278 (36%), Gaps = 25/278 (8%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
              + ++                +     +     E+    ++ K L  + +        
Sbjct: 210 QFYMGNS---PFVAENICEA-WENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTK 264

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KALTQLDLSQNSLAVVPSPA 204
             T L  L  ++ + +  NR    E+   +          + +  + +  N+L   P   
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 205 -LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
            L+ +  L +L   +N++      AF     L  L +  N+++ I  +      ++++ L
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFT-EQVENL 382

Query: 264 NLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDFEG-------LHNLDSLVLAH 315
           +   N+L  +P       +  +  ++  +N I  ++  +F+          N+ S+ L++
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           NQ+   P  +F+    L+S+ L GN +  +   +    
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 4e-27
 Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 25/239 (10%)

Query: 138 KKLKRLNLGGNELTRVPQ--------TSLSKLENLRKLELLHNRIA-LIEEGDFEG-KAL 187
            +++ +N+  N      Q              E ++ + + +N +     E   +  K L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
             L+   N L     PA  S   L  LNL +N+I+ + +N     + +E L+   NKL  
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQ-------TSLSKLENLRKLELLHNRIALIEEG 300
           I           +  ++   NE+  V          +  K  N+  + L +N+I+   + 
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 301 DFEGLHNLDSLVLAHNQLRTIP-------PRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
            F     L S+ L  N L  IP          F +  LL S++L  N +  +     + 
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 4e-27
 Identities = 56/286 (19%), Positives = 99/286 (34%), Gaps = 29/286 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIGK--KLKRLNLGGNE 149
            + + +NNL              +  L    + L    E  L + G   KL  LNL  N+
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL----EGKLPAFGSEIKLASLNLAYNQ 364

Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK--ALTQLDLSQNSLAVVPS----- 202
           +T +P       E +  L   HN++  I           ++ +D S N +  V       
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 203 --PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE--- 257
             P      ++  +NL++N+IS      F     L  + +  N L+ I  +S K      
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 258 ---KKLKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEG-----DFEGLHNL 308
                L  ++L  N+LT++      + L  L  ++L +N  +            +G    
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544

Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           +      N+     P      P L  L++  N I  V+      + 
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS 590

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (255), Expect = 5e-24
 Identities = 36/269 (13%), Positives = 91/269 (33%), Gaps = 48/269 (17%)

Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDFEG----- 184
           ++     ++++ L+   N+L  +P       +  +  ++  +N I  ++  +F+      
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 185 ---KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNA-------FQGLDT 234
                ++ ++LS N ++  P     + + L  +NL  N ++ +  N+       F+    
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ------------------- 275
           L  + +  NKL+ +  D        L  ++L  N  ++ P                    
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 276 ----------TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV 325
                       ++   +L +L++  N I  + E   +   N+  L +  N   +I    
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSY 606

Query: 326 FAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
                      L  +    +       ++
Sbjct: 607 VCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 14/221 (6%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGK-----ALTQLDLS 193
           ++  L+L G   +     ++ +L  L  L L  +   + E            +  Q    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 194 QNSLAVVPSPALKSLN--HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
           +              +   L+   +N +        + +       +    N ++ +   
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SK 200

Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
           +   L  KL++  +G +           + EN    +         E+  ++ L +L  +
Sbjct: 201 AVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDV 254

Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
            + +    T  P     LP +  + +  N   + +      
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 18/172 (10%), Positives = 42/172 (24%), Gaps = 11/172 (6%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF----QGLDTLEILTIFE 242
           +T L L     +     A+  L  L +L L  +                  + E      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 243 NKLSLIEPDSFKGLE-KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
                   D     +   L +  +  +   +  + S        ++  L N I  + +  
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA- 201

Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
              L  L    + ++                 +   +    +  +   +  L
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNL 248

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 23/182 (12%)

Query: 94  YLKLRHNNLPKLTGFIFFGLD--------IRHLTIHNSSLAVVEESSLSSIGKKLKRLNL 145
            + L  N L ++        +        +  + +  + L  + +   ++    L  ++L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG---------KALTQLDLSQNS 196
             N  ++ P T       L+   + + R    +                +LTQL +  N 
Sbjct: 521 SYNSFSKFP-TQPLNSSTLKGFGIRNQR--DAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           +  V      +++   +L++  N   ++  +         +  +F +K   I       +
Sbjct: 578 IRKVNEKITPNIS---VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

Query: 257 EK 258
           ++
Sbjct: 635 KR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 6/169 (3%)

Query: 191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP 250
           +   +     P  +L S   +  L+L     S    +A   L  LE+L +  +   + E 
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 251 DSFK---GLEKKLKRLNLGGNELTRVPQTSLSKLE--NLRKLELLHNRIALIEEGDFEGL 305
                        ++         +       + +  +L K  +  +      +      
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
                +    N +  +       L  L    +  +     +       E
Sbjct: 183 LKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENE 230

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  110 bits (277), Expect = 7e-29
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
             +D     L  +P+  P       +  + L  N I  +   AF     L  + +  N++
Sbjct: 14  NIVDCRGKGLTEIPTNLPE-----TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
           S + PD+F+GL + L  L L GN++T +P++    L +L+ L L  N+I  +    F+ L
Sbjct: 69  SELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           HNL+ L L  N+L+TI    F+ L  + ++ L  N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  100 bits (252), Expect = 3e-25
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 147 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPAL 205
           G  LT +P T+L   E + ++ L  N I +I  G F   K L ++DLS N ++ +   A 
Sbjct: 20  GKGLTEIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNL 265
           + L  L  L L  NKI+ L  + F+GL +L++L +  NK++ +  D+F+ L   L  L+L
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSL 135

Query: 266 GGNELTRVPQTSLSKLENLRKLELLHN 292
             N+L  + + + S L  ++ + L  N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
             + L  N +  +P  + S  + LR+++L +N+I+ +    F+G ++L  L L  N +  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           +P    + L  L +L LN NKI+ L  +AFQ L  L +L++++NKL  I   +F  L + 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-RA 153

Query: 260 LKRLNLGGN 268
           ++ ++L  N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 2/131 (1%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
            I  + +  +++ V+   + S   KKL+R++L  N+++ +   +   L +L  L L  N+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
           I  + +  FEG  +L  L L+ N +  +   A + L++L +L+L  NK+  +    F  L
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 233 DTLEILTIFEN 243
             ++ + + +N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326
           G  LT +P T+L   E + ++ L  N I +I  G F     L  + L++NQ+  + P  F
Sbjct: 20  GKGLTEIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 327 AHLPLLNSLELDGNHIHTVDPAAFSGL 353
             L  LNSL L GN I  +  + F GL
Sbjct: 77  QGLRSLNSLVLYGNKITELPKSLFEGL 103

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  109 bits (273), Expect = 4e-28
 Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 1/153 (0%)

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
            +LDL    LA +     + L  L  LNL++N++  L +  F  L  L  L +  N+L+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           +    F  L  +L +L LGGN+L  +P     +L  L++L L  N++  I  G F+ L N
Sbjct: 98  LPLGVFDHL-TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156

Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           L +L L+ NQL+++P   F  L  L ++ L GN
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  102 bits (257), Expect = 1e-25
 Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
            ++D    SL  VPS  PA         L+L    ++ L    F+GL  L  L +  N+L
Sbjct: 17  KEVDCQGKSLDSVPSGIPADTE-----KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
             +    F  L  +L  L L  N+L  +P      L  L KL L  N++  +  G F+ L
Sbjct: 72  QTLSAGVFDDL-TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
             L  L L  NQL++IP   F  L  L +L L  N + +V   AF  L
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 92.8 bits (231), Expect = 5e-22
 Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           ++L+L    L  +   +   L  L  L L +N++  +  G F+    L  L L+ N LA 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           +P      L  L  L L  N++ +L S  F  L  L+ L +  N+L  I   +F  L   
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-N 156

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
           L+ L+L  N+L  VP  +  +L  L+ + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 95  LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           L L+   L  L+   F GL  +  L +  + L  +       +  +L  L L  N+L  +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQLASL 98

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLL 212
           P      L  L KL L  N++  +  G F+    L +L L+ N L  +P+ A   L +L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158

Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
            L+L+ N++ ++   AF  L  L+ +T+F N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L +N L  L   +F  L  +  L +  + L  +       + K LK L L  N+L  
Sbjct: 87  TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK-LKELRLNTNQLQS 145

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
           +P  +  KL NL+ L L  N++  +  G F+    L  + L  N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  107 bits (270), Expect = 7e-28
 Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNA-FQGLDTLEILTIFENK 244
           T +D S   L  +P   P      +   L LN+N+ + L +   F+ L  L  +    NK
Sbjct: 14  TTVDCSNQKLNKIPEHIPQ-----YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK 68

Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
           ++ IE  +F+G    +  + L  N L  V       LE+L+ L L  NRI  +    F G
Sbjct: 69  ITDIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127

Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           L ++  L L  NQ+ T+ P  F  L  L++L L  N
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 94.7 bits (236), Expect = 4e-23
 Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 163 NLRKLELLHNRIALIE-EGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK 220
              +L L +N   ++E  G F+    L +++ S N +  +   A +  + +  + L  N+
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 221 ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280
           +  +    F+GL++L+ L +  N+++ +  DSF GL   ++ L+L  N++T V   +   
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDT 151

Query: 281 LENLRKLELLHN 292
           L +L  L LL N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 83.2 bits (206), Expect = 7e-19
 Identities = 29/131 (22%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
               L ++N+   V+E + +     +L+++N   N++T + + +      + ++ L  NR
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
           +  ++   F+G ++L  L L  N +  V + +   L+ + +L+L  N+I+ +   AF  L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 233 DTLEILTIFEN 243
            +L  L +  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 7e-12
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 283 NLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH 341
              +L L +N   ++E  G F+ L  L  +  ++N++  I    F     +N + L  N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 342 IHTVDPAAFSGL 353
           +  V    F GL
Sbjct: 93  LENVQHKMFKGL 104

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  106 bits (267), Expect = 8e-27
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 18/217 (8%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
            +  + NL    +T     + ++L ++ ++   ++ I  ++    +    +T+L L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNK 79

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           L  +    L +L +L  L L+ NK+  L  ++ + L  L+ L++  N +S I       L
Sbjct: 80  LTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDING--LVHL 133

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             +L+ L LG N++T +  T LS+L  L  L L  N+I+ I      GL  L +L L+ N
Sbjct: 134 -PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 188

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            +  +     A L  L+ LEL             S L
Sbjct: 189 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 97.4 bits (243), Expect = 2e-23
 Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 14/210 (6%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
             + ++    +++  V    +  L N+ KL L  N++  I+      K L  L L +N +
Sbjct: 46  NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKV 102

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             + S  LK L  L  L+L HN IS +  N    L  LE L +  NK++ I       L 
Sbjct: 103 KDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRL- 155

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
            KL  L+L  N+++ +    L+ L  L+ L L  N I+ +      GL NLD L L   +
Sbjct: 156 TKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 211

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
               P    ++L + N+++     + T + 
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.0 bits (216), Expect = 9e-20
 Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 16/201 (7%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
             + +L L GN+LT +    L+ L+NL  L L  N++  +     +  K L  L L  N 
Sbjct: 68  PNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNG 123

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           ++ +    L  L  L  L L +NKI+ +       L  L+ L++ +N++S I P    GL
Sbjct: 124 ISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             KL+ L L  N ++ +   +L+ L+NL  LEL               L   +++     
Sbjct: 178 -TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 317 QLRTIPPRVFAHLPLLNSLEL 337
            L  + P + +         +
Sbjct: 235 SL--VTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.4 bits (204), Expect = 4e-18
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 20/209 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            +   ++++  + G  +   ++  L ++ + L     + +  +   K L  L L  N++ 
Sbjct: 50  QIIANNSDIKSVQGIQYL-PNVTKLFLNGNKL-----TDIKPLANLKNLGWLFLDENKVK 103

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +  +SL  L+ L+ L L HN I+ I          L  L L  N +  +    L  L  
Sbjct: 104 DL--SSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTK 157

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L  L+L  N+IS +      GL  L+ L + +N +S +      GL K L  L L   E 
Sbjct: 158 LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLRA--LAGL-KNLDVLELFSQEC 212

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEE 299
              P    S L     ++     +   E 
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275
                I  + S             + +  ++         L   + ++    +++  V  
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSV-- 61

Query: 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
             +  L N+ KL L  N++  I+      L NL  L L  N+++ +       L  L SL
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL 117

Query: 336 ELDGNHIHTVDP 347
            L+ N I  ++ 
Sbjct: 118 SLEHNGISDING 129

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (274), Expect = 1e-26
 Identities = 54/285 (18%), Positives = 97/285 (34%), Gaps = 11/285 (3%)

Query: 63  NGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHN 122
             +    + +    I   + T    S L +  ++   N+  ++   ++    + + +I N
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISN 256

Query: 123 SSLAVVEESSLSSIG----KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE 178
             L    +           K L    +  +              N+       +   ++ 
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 179 EGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL--HSNAFQGLDTL 235
                       LD S N L          L  L  L L  N++  L   +     + +L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
           + L I +N +S  E        K L  LN+  N LT      L     ++ L+L  N+I 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

Query: 296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
            I +   + L  L  L +A NQL+++P  +F  L  L  + L  N
Sbjct: 435 SIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (258), Expect = 2e-24
 Identities = 40/219 (18%), Positives = 88/219 (40%), Gaps = 10/219 (4%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
           +  + L G    R    S + L+ L   +++ +     +   +E    +   + + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS--FKGL 256
           +V       ++  L L+ ++N ++         L  LE L +  N+L  +   +     +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 257 EKKLKRLNLGGNELTRV-PQTSLSKLENLRKLELLHNRIALIEEGDFEGL-HNLDSLVLA 314
            K L++L++  N ++    +   S  ++L  L +  N +    +  F  L   +  L L 
Sbjct: 374 -KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCLPPRIKVLDLH 429

Query: 315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            N++++IP +V   L  L  L +  N + +V    F  L
Sbjct: 430 SNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL 467

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 6e-21
 Identities = 55/299 (18%), Positives = 111/299 (37%), Gaps = 10/299 (3%)

Query: 26  ATSFLCLLLLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLK 85
             +   L L    C+L+  +     + ++  Q + K + L +    T        +  + 
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 86  SKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAV--VEESSLSSIGKKLKRL 143
             +        ++         F + G  ++ L+IH     V    +S +  I   +   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS 202
           N   +    V     SK+     L+  +N +      +      L  L L  N L  +  
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 203 PA--LKSLNHLLILNLNHNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
            A     +  L  L+++ N +S            +L  L +  N L+      F+ L  +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCLPPR 422

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
           +K L+L  N++  +P+  + KLE L++L +  N++  + +G F+ L +L  + L  N  
Sbjct: 423 IKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
           +D S+N L  VP    +      ILN++ N IS L ++    L  L IL I  N++  ++
Sbjct: 5   VDRSKNGLIHVPKDLSQKTT---ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGLHNL 308
              FK   ++L+ L+L  N+L ++         NL+ L+L  N   AL    +F  +  L
Sbjct: 62  ISVFKFN-QELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 309 DSLVLAHNQLRTIPPRVFAHLPLLN-SLELDGNHIHTVDPAAFSGL 353
             L L+   L        AHL +    L L   +    DP      
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.2 bits (216), Expect = 5e-19
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 11/206 (5%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             + +K   LN+  N ++ +  + +  L  LR L + HNRI  ++   F+  + L  LDL
Sbjct: 17  KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISAL-HSNAFQGLDTLEILTIFENKLSLIEPD 251
           S N L  +      +L H   L+L+ N   AL     F  +  L+ L +    L      
Sbjct: 77  SHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
               L      L LG     +         E L+        I      +F  + ++   
Sbjct: 134 PIAHLNISKVLLVLGETYGEKED------PEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLEL 337
            +A+ +L  I   +  +        L
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSIL 213

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 81.4 bits (201), Expect = 4e-17
 Identities = 37/282 (13%), Positives = 85/282 (30%), Gaps = 22/282 (7%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEES--SLSSIG-KKLKRLNLGGNEL 150
           +L L   +L K +      L+I  + +        +E    L     + L  +     E 
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG----------KALTQLDLSQNSLAVV 200
             +   S+  + NL    +                           LT  ++     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 201 PSPALKSLNHLLILNLNHNKISALH-----SNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
               L     +   ++++ K+           +   L  L I  +  +     +   ++ 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
               +   N   +    V     SK+     L+  +N +      +   L  L++L+L  
Sbjct: 299 F-SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 316 NQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPA-AFSGLE 354
           NQL+ +     +   +  L  L++  N +   +     S  +
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 7e-14
 Identities = 41/298 (13%), Positives = 84/298 (28%), Gaps = 43/298 (14%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           YL L HN L K++      L  +HL +  ++   +          +LK L L    L + 
Sbjct: 73  YLDLSHNKLVKISCHPTVNL--KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDF----EGKALTQLDLSQNSLAVVPSPALKSLN 209
               ++ L   + L +L       E+ +       ++L  +  +      +   ++K++ 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFEN----KLSLIEPDSFKGLE-------- 257
           +L + N+         S     L  L+      N     +        + L+        
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 258 -------------------------KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
                                    K L    +  +              N+       +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
              ++       +     L  ++N L         HL  L +L L  N +  +   A 
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (260), Expect = 8e-25
 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
            +  +  LG   +T     S + L+ +  L+     I  I+    E    LTQ++ S N 
Sbjct: 24  AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 79

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           L  +    LK+L  L+ + +N+N+I+ +       L  L  LT+F N+++ I+P   K L
Sbjct: 80  LTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNL 133

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
              L RL L  N ++ +   +LS L +L++L   +    L        L  L+ L ++ N
Sbjct: 134 -TNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSN 187

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
           ++  I     A L  L SL    N I  + P
Sbjct: 188 KVSDISV--LAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 98.1 bits (245), Expect = 7e-23
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 18/208 (8%)

Query: 131 SSLSSIG--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KAL 187
           S ++ +G    L  L+L GN+L  +   +L+ L NL  L+L +N+I+ +      G   L
Sbjct: 212 SDITPLGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA--PLSGLTKL 267

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
           T+L L  N ++ +    L  L  L  L LN N++  +  +    L  L  LT++ N +S 
Sbjct: 268 TELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD 323

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           I P     L  KL+RL    N+++ V   SL+ L N+  L   HN+I+ +       L  
Sbjct: 324 ISP--VSSL-TKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
           +  L L        P    A++ + N++
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 17/193 (8%)

Query: 156 TSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLIL 214
            + + L    K  L    +   + + D     +T L   +  +  +    ++ LN+L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGIKSI--DGVEYLNNLTQI 73

Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274
           N ++N+++ +     + L  L  + +  N+++ I P     L   L  L L  N++T + 
Sbjct: 74  NFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDID 128

Query: 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNS 334
              L  L NL +LEL  N I+ I      GL +L  L    NQ+  + P   A+L  L  
Sbjct: 129 --PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLER 181

Query: 335 LELDGNHIHTVDP 347
           L++  N +  +  
Sbjct: 182 LDISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 18/187 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            LKL  N +  ++        + +L ++ + L       +S I   K L  L L  N ++
Sbjct: 269 ELKLGANQISNISPLAGL-TALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 322

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +    +S L  L++L   +N+++ +          +  L    N ++ +    L +L  
Sbjct: 323 DIS--PVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           +  L LN    +    N    +     +      L      S  G        ++  N  
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGG---SYTEPDITWNLP 433

Query: 271 TRVPQTS 277
           +   + S
Sbjct: 434 SYTNEVS 440

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  101 bits (253), Expect = 9e-25
 Identities = 55/261 (21%), Positives = 109/261 (41%), Gaps = 26/261 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            +    +N+            I  L+   + +     +++  +     L  L L  N++T
Sbjct: 23  KIAAGKSNVTDTVTQADL-DGITTLSAFGTGV-----TTIEGVQYLNNLIGLELKDNQIT 76

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +    L  L  + +LEL  N +  +      G +++  LDL+   +  V    L  L++
Sbjct: 77  DLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSN 130

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL 270
           L +L L+ N+I+ +  +   GL  L+ L+I   ++S + P     L  KL  L    N++
Sbjct: 131 LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKI 185

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP 330
           + +    L+ L NL ++ L +N+I+ +         NL  + L +  +   P     +L 
Sbjct: 186 SDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 331 LLNSLELDGNHIHTVDPAAFS 351
           + N ++  G     + PA  S
Sbjct: 242 VPNVVK--GPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.4 bits (235), Expect = 4e-22
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 16/191 (8%)

Query: 158 LSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
              L N  K+    + +   + + D     +T L      +  +    ++ LN+L+ L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
             N+I+ L     + L  +  L +  N L  +      GL + +K L+L   ++T V   
Sbjct: 71  KDNQITDL--APLKNLTKITELELSGNPLKNVSA--IAGL-QSIKTLDLTSTQITDVT-- 123

Query: 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 336
            L+ L NL+ L L  N+I  I      GL NL  L + + Q+  + P   A+L  L +L+
Sbjct: 124 PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 337 LDGNHIHTVDP 347
            D N I  + P
Sbjct: 180 ADDNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 27/165 (16%), Positives = 62/165 (37%), Gaps = 15/165 (9%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            L L    +  +T       +++ L +  + +     +++S +     L+ L++G  +++
Sbjct: 111 TLDLTSTQITDVTPLAGLS-NLQVLYLDLNQI-----TNISPLAGLTNLQYLSIGNAQVS 164

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNH 210
            +    L+ L  L  L+   N+I+ I          L ++ L  N ++ V    L + ++
Sbjct: 165 DLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSN 218

Query: 211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKG 255
           L I+ L +  I+         L    ++             S  G
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 1e-24
 Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 40/260 (15%)

Query: 95  LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
           L +  + L  L   +   +    L I +++L     +SL ++  +L+ L + GN+LT +P
Sbjct: 45  LNVGESGLTTLPDCLPAHI--TTLVIPDNNL-----TSLPALPPELRTLEVSGNQLTSLP 97

Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLIL 214
                 L  L         +  +  G      L +L +  N L  +P         L  L
Sbjct: 98  V-LPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTSLPV----LPPGLQEL 146

Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274
           +++ N++++L +        L  L  + N+L+ + P    GL++    L++  N+L  +P
Sbjct: 147 SVSDNQLASLPA----LPSELCKLWAYNNQLTSL-PMLPSGLQE----LSVSDNQLASLP 197

Query: 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNS 334
                    L KL   +NR+  +          L  L+++ N+L ++P         L  
Sbjct: 198 TL----PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPV----LPSELKE 245

Query: 335 LELDGNHIHTVDPAAFSGLE 354
           L + GN + ++ P   SGL 
Sbjct: 246 LMVSGNRLTSL-PMLPSGLL 264

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 3e-22
 Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 37/262 (14%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L++  N L  L         +  L+I +        + L ++   L +L + GN+LT +
Sbjct: 85  TLEVSGNQLTSLPVLPP---GLLELSIFS-----NPLTHLPALPSGLCKLWIFGNQLTSL 136

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
           P         L++L +  N++A +         L +L    N L  +P       + L  
Sbjct: 137 P----VLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP----MLPSGLQE 185

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L+++ N++++L          L  L  + N+L+     S   L   LK L + GN LT +
Sbjct: 186 LSVSDNQLASL----PTLPSELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSL 236

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
           P         L++L +  NR+  +          L SL +  NQL  +P     HL    
Sbjct: 237 P----VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPES-LIHLSSET 287

Query: 334 SLELDGNHIHTVDPAAFSGLEA 355
           ++ L+GN +      A   + +
Sbjct: 288 TVNLEGNPLSERTLQALREITS 309

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.0 bits (236), Expect = 1e-21
 Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 32/217 (14%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
                LN+G + LT +P    +   ++  L +  N +  +         L  L++S N L
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL 93

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +P      L  L I +     + AL S        L  L IF N+L+ + P    GL+
Sbjct: 94  TSLP-VLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSL-PVLPPGLQ 144

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
           +    L++  N+L  +P    +    L KL   +N++  +          L  L ++ NQ
Sbjct: 145 E----LSVSDNQLASLP----ALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQ 192

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           L ++P         L  L    N + ++ PA  SGL+
Sbjct: 193 LASLPT----LPSELYKLWAYNNRLTSL-PALPSGLK 224

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.8 bits (194), Expect = 4e-16
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 28/225 (12%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L +  N L  L        ++  L  +N+ L     +SL  +   L+ L++  N+L  +
Sbjct: 145 ELSVSDNQLASLPALPS---ELCKLWAYNNQL-----TSLPMLPSGLQELSVSDNQLASL 196

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
           P         L KL   +NR+  +         L +L +S N L  +P       + L  
Sbjct: 197 PTL----PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLPV----LPSELKE 245

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L ++ N++++L          L  L+++ N+L+ + P+S   L      +NL GN L+  
Sbjct: 246 LMVSGNRLTSLPML----PSGLLSLSVYRNQLTRL-PESLIHL-SSETTVNLEGNPLSER 299

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
                  L  +         I   +           +L LA    
Sbjct: 300 TL---QALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 208 LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG 267
            N   +LN+  + ++ L          +  L I +N L+ + P        +L+ L + G
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSL-PALP----PELRTLEVSG 90

Query: 268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
           N+LT +P      L  L         +  +          L  L +  NQL ++P     
Sbjct: 91  NQLTSLPV-LPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPV---- 138

Query: 328 HLPLLNSLELDGNHIHTVDPAAFSGLE 354
             P L  L +  N + ++ PA  S L 
Sbjct: 139 LPPGLQELSVSDNQLASL-PALPSELC 164

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
           L      LN+G + LT +P    +   ++  L +  N +  +          L +L ++ 
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLP----ALPPELRTLEVSG 90

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHI 342
           NQL ++P  +   L  L+       H+
Sbjct: 91  NQLTSLPV-LPPGLLELSIFSNPLTHL 116

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  100 bits (250), Expect = 2e-24
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 6/200 (3%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVV 200
            + NL    +T     + ++L ++ ++   ++ I  ++        +  L L  N L  +
Sbjct: 22  IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQ-YLPNVRYLALGGNKLHDI 78

Query: 201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
              ALK L +L  L L  N++ +L +  F  L  L+ L + EN+L  +    F  L   L
Sbjct: 79  S--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNL 135

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
             LNL  N+L  +P+    KL NL +L+L +N++  + EG F+ L  L  L L  NQL++
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 321 IPPRVFAHLPLLNSLELDGN 340
           +P  VF  L  L  + L  N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 97.0 bits (242), Expect = 2e-23
 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 11/214 (5%)

Query: 141 KRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
           + + +        P            K  L    +      + E  ++ Q+  + + +  
Sbjct: 1   ETITVSTPIKQIFPDDAFAE----TIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKS 55

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           V    ++ L ++  L L  NK+  +  +A + L  L  L +  N+L  +    F  L   
Sbjct: 56  VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKL-TN 110

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           LK L L  N+L  +P     KL NL  L L HN++  + +G F+ L NL  L L++NQL+
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           ++P  VF  L  L  L L  N + +V    F  L
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 7/142 (4%)

Query: 133 LSSIG-----KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KA 186
           L  I        L  L L GN+L  +P     KL NL++L L+ N++  + +G F+    
Sbjct: 75  LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
           LT L+L+ N L  +P      L +L  L+L++N++ +L    F  L  L+ L +++N+L 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 247 LIEPDSFKGLEKKLKRLNLGGN 268
            +    F  L   L+ + L  N
Sbjct: 195 SVPDGVFDRL-TSLQYIWLHDN 215

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 1e-23
 Identities = 57/284 (20%), Positives = 99/284 (34%), Gaps = 12/284 (4%)

Query: 66  DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI--FFGLDIRHLTIHNS 123
           +I     + Q++   ++ L     L+   L+               F+   + +L I+N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 124 SLAVVEESSLSSIG----KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE 179
           ++    +    +      K L   ++         +   S    +    L  +    I  
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 180 GDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQ--GLDTLE 236
                  + T L+ +QN           +L  L  L L  N +      A     + +LE
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406

Query: 237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL 296
            L +  N L+    D      + +  LNL  N LT      L     ++ L+L +NRI  
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS 464

Query: 297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           I +     L  L  L +A NQL+++P  VF  L  L  + L  N
Sbjct: 465 IPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 2e-20
 Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 6/192 (3%)

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLA 198
            K L+L  N ++ +    +S L  LR L L HNRI  ++   F   + L  LD+S N L 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNA-FQGLDTLEILTIFENKLSLIEPDSFKGLE 257
            +    + SL H   L+L+ N    L     F  L  L  L +   K   ++      L 
Sbjct: 114 NISCCPMASLRH---LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
                L+L    +      SL    N   L L+ +  +L        ++ L  L L++ +
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 318 LRTIPPRVFAHL 329
           L     +     
Sbjct: 230 LNDENCQRLMTF 241

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
           + +D S  +L  VP   P          L+L+ N IS L       L  L +L +  N++
Sbjct: 34  SMVDYSNRNLTHVPKDLPP-----RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEG 304
             ++   F    + L+ L++  N L  +       + +LR L+L  N    L    +F  
Sbjct: 89  RSLDFHVFLFN-QDLEYLDVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPL-LNSLELDGNHIHTVDPAAFSGL 353
           L  L  L L+  + R +     AHL L    L+L   HI   +  +    
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 45/296 (15%), Positives = 83/296 (28%), Gaps = 41/296 (13%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           YL + HN L  ++      L  RHL +  +   V+          KL  L L   +  ++
Sbjct: 104 YLDVSHNRLQNISCCPMASL--RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 154 PQTSLSKLE-NLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
               ++ L  +   L+L+   I   E    +    T L L  +  ++       S+N L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 213 ILNLNHNKISALHSNAFQGL----------------------------------DTLEIL 238
            L L++ K++  +                                           +E L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 239 TIFENKL----SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
            I+   +       E    +   K L   ++         +   S    +    L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 350
             I         +   L    N       +  + L  L +L L  N +      A 
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 16/206 (7%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
               + NLG   +T +   S  +L  ++     ++ I  +    F    L +L LS N +
Sbjct: 19  ANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGMQFF-TNLKELHLSHNQI 75

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
           + +    LK L  L  L++N N++  L+         L  L +  N+L   +      L 
Sbjct: 76  SDLS--PLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTDS--LIHL- 127

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
           K L+ L++  N+L  +    L  L  L  L+L  N I          L  ++ + L   +
Sbjct: 128 KNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWIDLTGQK 183

Query: 318 LRTIPPRVFAHLPLLNSLE-LDGNHI 342
               P +    L + N+++  DG  I
Sbjct: 184 CVNEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 90.9 bits (226), Expect = 3e-21
 Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 15/187 (8%)

Query: 156 TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILN 215
                L N  K  L    +  +     E   +   +   +++  +    ++   +L  L+
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK-ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275
           L+HN+IS L  +  + L  LE L++  N+L  +           L RL L  NEL     
Sbjct: 70  LSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIPS----ACLSRLFLDNNELRDT-- 121

Query: 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSL 335
            SL  L+NL  L + +N++  I       L  L+ L L  N++          L  +N +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 336 ELDGNHI 342
           +L G   
Sbjct: 178 DLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLN 264
              L + +  NL    ++ L S   + L  ++      + +  +     +     LK L+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFF-TNLKELH 69

Query: 265 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPR 324
           L  N+++ +  + L  L  L +L +  NR+  +          L  L L +N+LR     
Sbjct: 70  LSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTDS- 123

Query: 325 VFAHLPLLNSLELDGNHIHTVDP 347
              HL  L  L +  N + ++  
Sbjct: 124 -LIHLKNLEILSIRNNKLKSIVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 243 NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF 302
             ++ + PD   GL     + NLG   +T +   S  +L  ++     ++ I  +     
Sbjct: 7   TPINQVFPDP--GL-ANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLA--GM 59

Query: 303 EGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           +   NL  L L+HNQ+  + P     L  L  L ++ N +  ++    + L 
Sbjct: 60  QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS 109

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 88.9 bits (221), Expect = 4e-21
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 12/185 (6%)

Query: 159 SKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218
           S  +      L  +  A I E      +LT + L+  ++  +    ++  +++  L +N+
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQM--NSLTYITLANINVTDLT--GIEYAHNIKDLTINN 75

Query: 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL 278
              +    N   GL  LE L I    ++  +  +  GL   L  L++  +       T +
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKI 132

Query: 279 SKLENLRKLELLHN-RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
           + L  +  ++L +N  I  I     + L  L SL +  + +           P LN L  
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188

Query: 338 DGNHI 342
               I
Sbjct: 189 FSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 12/185 (6%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
           K      LG +    +   + +++ +L  + L +  +  +     E    +  L ++   
Sbjct: 23  KAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
                   +  L++L  L +    +++       GL +L +L I  +            L
Sbjct: 78  ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             K+  ++L  N         L  L  L+ L +  + +        E    L+ L     
Sbjct: 136 -PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191

Query: 317 QLRTI 321
            +   
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
           KA     L Q+S A +    + SL ++    L +  ++ L     +    ++ LTI    
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
            +   P    GL   L+RL + G ++T     +LS L +L  L++ H+            
Sbjct: 78  ATNYNP--ISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 305 LHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
           L  ++S+ L++N  +  I P     LP L SL +  + +H    
Sbjct: 135 LPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 15/183 (8%)

Query: 118 LTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 177
             +  SS A + E+ +      L  + L    +T +  T +    N++ L + +      
Sbjct: 28  GLLGQSSTANITEAQM----NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY 81

Query: 178 EEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLE 236
                 G   L +L +    +     P L  L  L +L+++H+            L  + 
Sbjct: 82  NP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 237 ILTIFEN-KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA 295
            + +  N  ++ I P   K L  +LK LN+  + +       +     L +L      I 
Sbjct: 140 SIDLSYNGAITDIMP--LKTL-PELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIG 194

Query: 296 LIE 298
             +
Sbjct: 195 GKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 39/180 (21%), Positives = 74/180 (41%), Gaps = 13/180 (7%)

Query: 74  NQKIQHTMTTLKSKSGLI-IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESS 132
           N  +  + T   +++ +  + Y+ L + N+  LTG  +   +I+ LTI+N        ++
Sbjct: 27  NGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHA-----TN 80

Query: 133 LSSIG--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQ 189
            + I     L+RL + G ++T     +LS L +L  L++ H+               +  
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
           +DLS N       P LK+L  L  LN+  + +        +    L  L  F   +   +
Sbjct: 141 IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%)

Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
            T +         S     +   +   L  + L    +T +  T +    N++ L + + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQM-NSLTYITLANINVTDL--TGIEYAHNIKDLTINNI 76

Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
                      GL NL+ L +    + +      + L  L  L++  +          + 
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 353 L 353
           L
Sbjct: 135 L 135

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 7e-21
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 30/242 (12%)

Query: 115 IRHLTIHNSSLAVVEESSLSSIGK--KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
           +  L  HNSS+     + ++ I K   L +L    N +T +    LS+  NL  L    N
Sbjct: 44  LTSLDCHNSSI-----TDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN 95

Query: 173 RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL 232
           ++  ++        LT L+   N L  +    +     L  LN   N ++ +  +    L
Sbjct: 96  KLTNLDVTPL--TKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQL 150

Query: 233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 292
             L+      +    I          +L  L+   N++T +    +S+ + L +L    N
Sbjct: 151 TELDC-----HLNKKITKLDVTPQ-TQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201

Query: 293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 352
            I  +   D      L  L  + N+L  I       L  L   +   N +  +D +  S 
Sbjct: 202 NITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK 255

Query: 353 LE 354
           L 
Sbjct: 256 LT 257

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 21/218 (9%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNS 196
                      E+      S  +L  L  L+  ++ I  +     E    LT+L  + N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           +  +    L    +L  L  + NK++ L       L  L  L    NKL+ ++       
Sbjct: 76  ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQN--- 126

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
              L  LN   N LT +    +S    L +L+   N+   I + D      L +L  + N
Sbjct: 127 -PLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFN 180

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           ++  +     +   LLN L  D N+I  +D      L 
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKLDLNQNIQLT 215

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 8e-19
 Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 29/251 (11%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L    NN+  L       L   +L   ++ L  ++ + L     KL  LN   N+LT++
Sbjct: 68  KLICTSNNITTLDLSQNTNL--TYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKL 121

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
               +S+   L  L    N +  I+        LT+LD   N    +    +     L  
Sbjct: 122 D---VSQNPLLTYLNCARNTLTEIDVSHN--TQLTELDCHLNKK--ITKLDVTPQTQLTT 174

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L+ + NKI+ L          L  L    N ++ ++ +       +L  L+   N+LT +
Sbjct: 175 LDCSFNKITELD---VSQNKLLNRLNCDTNNITKLDLNQN----IQLTFLDCSSNKLTEI 227

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
               ++ L  L   +   N +  +   D   L  L +L      L  I      H   L 
Sbjct: 228 D---VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEID---LTHNTQLI 278

Query: 334 SLELDGNHIHT 344
             + +G     
Sbjct: 279 YFQAEGCRKIK 289

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 9e-19
 Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 39/270 (14%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           YL    N L KL       L   +L    ++L  ++ S       +L  L+   N+    
Sbjct: 110 YLNCDTNKLTKLDVSQNPLL--TYLNCARNTLTEIDVSHN----TQLTELDCHLNKKITK 163

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
               ++    L  L+   N+I  ++      K L +L+   N++  +    L     L  
Sbjct: 164 L--DVTPQTQLTTLDCSFNKITELDVSQN--KLLNRLNCDTNNITKLD---LNQNIQLTF 216

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L+ + NK++ +       L  L       N L+ ++  +      KL  L+    +L  +
Sbjct: 217 LDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS----KLTTLHCIQTDLLEI 269

Query: 274 PQTSLSKLE----------------NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
             T  ++L                 +  +L LL  + A I E D      L  L L + +
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
           L  +     +H   L SL     HI     
Sbjct: 330 LTELD---VSHNTKLKSLSCVNAHIQDFSS 356

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 30/254 (11%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L    N + +L       L    L    +++  ++ +       +L  L+   N+LT +
Sbjct: 174 TLDCSFNKITELDVSQNKLL--NRLNCDTNNITKLDLNQN----IQLTFLDCSSNKLTEI 227

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
               ++ L  L   +   N +  ++        LT L   Q  L  +    L     L+ 
Sbjct: 228 D---VTPLTQLTYFDCSVNPLTELDVSTL--SKLTTLHCIQTDLLEID---LTHNTQLIY 279

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
                 +   +          L +L      ++ ++         KL  L L   ELT +
Sbjct: 280 FQAEGCRK--IKELDVTHNTQLYLLDCQAAGITELDLSQNP----KLVYLYLNNTELTEL 333

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL-- 331
               +S    L+ L  ++  I          +  L++   A  Q  T+P     +  L  
Sbjct: 334 D---VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 332 ---LNSLELDGNHI 342
               + L+  GN +
Sbjct: 389 AVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 182 FEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF 241
           F          +   +    + + + L  L  L+ +++ I+ +     + L  L  L   
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICT 72

Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
            N ++ ++          L  L    N+LT +    ++ L  L  L    N+   + + D
Sbjct: 73  SNNITTLDLSQN----TNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNK---LTKLD 122

Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
                 L  L  A N L  I     +H   L  L+   N   T   
Sbjct: 123 VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 19/186 (10%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           Y     N L +L       L    L    + L  ++ +  +    +L      G    ++
Sbjct: 237 YFDCSVNPLTELDVSTLSKL--TTLHCIQTDLLEIDLTHNT----QLIYFQAEGC--RKI 288

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
            +  ++    L  L+     I  ++        L  L L+   L  +    +     L  
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITELDLSQN--PKLVYLYLNNTELTELD---VSHNTKLKS 343

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL----KRLNLGGNE 269
           L+  +  I     ++   +  L      E +   +  ++       +      L+  GN 
Sbjct: 344 LSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

Query: 270 LTRVPQ 275
           +   P 
Sbjct: 402 MNIEPG 407

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 32/240 (13%)

Query: 115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 174
              L ++N  L     SSL  +   L+ L    N LT +P+     L++L         +
Sbjct: 73  AHELELNNLGL-----SSLPELPPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKAL 126

Query: 175 ALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDT 234
           + +         L  L +S N L  +P   L++ + L I+++++N +  L         +
Sbjct: 127 SDLPPL------LEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPS 174

Query: 235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
           LE +    N+L   E    + L   L  +    N L ++P        +L  +   +N +
Sbjct: 175 LEFIAAGNNQLE--ELPELQNL-PFLTAIYADNNSLKKLP----DLPLSLESIVAGNNIL 227

Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
             + E   + L  L ++   +N L+T+P       P L +L +  N++  + P     L 
Sbjct: 228 EELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PELPQSLT 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 53/278 (19%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNELT 151
            +   +N+L KL         +  +   N+ L       L  +     L  +    N L 
Sbjct: 199 AIYADNNSLKKLPDLPL---SLESIVAGNNIL-----EELPELQNLPFLTTIYADNNLLK 250

Query: 152 RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHL 211
            +P        +L  L +  N +  + E     ++LT LD+S+N  + +         +L
Sbjct: 251 TLP----DLPPSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSE----LPPNL 299

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
             LN + N+I +L         +LE L +  NKL  + P        +L+RL    N L 
Sbjct: 300 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PALPP----RLERLIASFNHLA 350

Query: 272 RVPQTSLSKLENLRKLELLHNRIALIEEG---------------DFEGLHNLDSLVLAHN 316
            VP       +NL++L + +N +    +                  E   NL  L +  N
Sbjct: 351 EVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            LR  P         +  L ++   +      A    +
Sbjct: 407 PLREFPDI----PESVEDLRMNSERVVDPYEFAHETTD 440

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 41/218 (18%), Positives = 74/218 (33%), Gaps = 31/218 (14%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQ-------- 189
           K         +E  R       +   +    L         E +     L+         
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL 93

Query: 190 --LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
             L  S NSL  +P    +SL  LL+ N N   +S L          LE L +  N+L  
Sbjct: 94  ESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK 145

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           +     +     LK +++  N L ++P        +L  +   +N++  + E   + L  
Sbjct: 146 L--PELQNS-SFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEELPE--LQNLPF 196

Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
           L ++   +N L+ +P         L S+    N +  +
Sbjct: 197 LTAIYADNNSLKKLPD----LPLSLESIVAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 42/216 (19%)

Query: 161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL------------ 208
              L++     + +  +       K+ T+   + +       P                 
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 209 -NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK--------- 258
                 L LN+  +S+L          LE L    N L+ + P+  + L+          
Sbjct: 70  DRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLK 124

Query: 259 -------KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
                   L+ L +  N+L ++P   L     L+ +++ +N +  +     +   +L+ +
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFI 178

Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
              +NQL  +P     +LP L ++  D N +  +  
Sbjct: 179 AAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD 212

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 1e-19
 Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 30/267 (11%)

Query: 81  MTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLD-IRHLTIHNSSLAVVEESSLSSIGKK 139
           M+ +   +          +N +       F   D      +   +           +  +
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV 199
              L L    L+ +P         +  LE+  N +  + E      +L  LD   N L+ 
Sbjct: 61  FSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPE---LPASLEYLDACDNRLST 114

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           +P         L  L++++N+++ L          LE +    N+L+++ P+        
Sbjct: 115 LPE----LPASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTML-PELPT----S 161

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL----DSLVLAH 315
           L+ L++  N+LT +P       E+L  L++  N +  +        H+            
Sbjct: 162 LEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPAV-PVRNHHSEETEIFFRCRE 216

Query: 316 NQLRTIPPRVFAHLPLLNSLELDGNHI 342
           N++  IP  +   L    ++ L+ N +
Sbjct: 217 NRITHIPENIL-SLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 40/264 (15%)

Query: 95  LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
           + L  NN   L+            + +N+      +    S   K ++  L G       
Sbjct: 3   IMLPINNNFSLSQ----------NSFYNTISGTYAD--YFSAWDKWEKQALPGENRNEAV 50

Query: 155 QT-SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
                  +    +L+L    ++ + +       +T L+++QN+L  +P         L  
Sbjct: 51  SLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPE----LPASLEY 104

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L+   N++S L         +L+ L +  N+L+++ P+    LE     +N   N+LT +
Sbjct: 105 LDACDNRLSTLPEL----PASLKHLDVDNNQLTML-PELPALLEY----INADNNQLTML 155

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL-- 331
           P        +L  L + +N++  + E       +L++L ++ N L ++P     +     
Sbjct: 156 P----ELPTSLEVLSVRNNQLTFLPEL----PESLEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 332 -LNSLELDGNHIHTVDPAAFSGLE 354
                    N I  + P     L+
Sbjct: 208 TEIFFRCRENRITHI-PENILSLD 230

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 38/262 (14%), Positives = 72/262 (27%), Gaps = 36/262 (13%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
           Y+   +N L  L         +  L++ N+ L     + L  + + L+ L++  N L  +
Sbjct: 144 YINADNNQLTMLPELP---TSLEVLSVRNNQL-----TFLPELPESLEALDVSTNLLESL 195

Query: 154 PQTSLSKLENLRK----LELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209
           P     +  +  +         NRI  I E          + L  N L+     +L    
Sbjct: 196 PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 210 HLLILNLNHNKISALHS--------------NAFQGLDTLEILTIFENKLSLIEPDSFKG 255
                +      S                    F      ++  I+         ++F  
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

Query: 256 LEKKLKRLN------LGGNELTRVPQTSLSKLENLRKLELLHNRIAL--IEEGDFEGLHN 307
              +L              ++    +  LS    LR+        A    E+      +N
Sbjct: 315 FLDRLSDTVSARNTSGFREQVAAWLEK-LSASAELRQQSFAVAADATESCEDRVALTWNN 373

Query: 308 LDSLVLAHNQLRTIPPRVFAHL 329
           L   +L H     +       L
Sbjct: 374 LRKTLLVHQASEGLFDNDTGAL 395

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
           T ++        VP+  PA  +      L+L  N + +L +  F  L +L  L +  NKL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT-----YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL 64

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
             +    F  L   L  LNL  N+L  +P     KL  L++L L  N++  + +G F+ L
Sbjct: 65  QSLPNGVFNKL-TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
             L  L L  NQL+++P  VF  L  L  + L  N
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
               L +  N L  +    F  L   L +L LGGN+L  +P    +KL +L  L L  N+
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           +  +  G F+ L  L  L L  NQL+++P  VF  L  L  L L  N + +V    F  L
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
           + I  +   L+L  N L  +P     +L +L +L L  N++  +  G F    +LT L+L
Sbjct: 24  TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83

Query: 193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS 252
           S N L  +P+     L  L  L LN N++ +L    F  L  L+ L +++N+L  +    
Sbjct: 84  STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143

Query: 253 FKGLEKKLKRLNLGGN 268
           F  L   L+ + L  N
Sbjct: 144 FDRL-TSLQYIWLHDN 158

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 86.7 bits (214), Expect = 3e-19
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 243 NKLSLIEPDSFKGLEKKLKRLNLGGN-ELTRVPQTSLSKLENLRKLELLHNRIALIEEGD 301
              +L       G E  L  L +     L  +    L  L  LR L ++ + +  +    
Sbjct: 17  RDGALDSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 302 FEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
           F     L  L L+ N L ++  +    L  L  L L GN +H
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 81.3 bits (200), Expect = 2e-17
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 270 LTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH 328
                   L   ENL +L + + + +  +E  D  GL  L +L +  + LR + P  F  
Sbjct: 20  ALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 329 LPLLNSLELDGNHIHTVDPAAFSGL 353
            P L+ L L  N + ++      GL
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 71.7 bits (175), Expect = 3e-14
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 25/122 (20%)

Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209
                   L   ENL +L + +                         L  +    L+ L 
Sbjct: 20  ALDSLH-HLPGAENLTELYIENQ----------------------QHLQHLELRDLRGLG 56

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            L  L +  + +  +  +AF     L  L +  N L  +   + +GL   L+ L L GN 
Sbjct: 57  ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL--SLQELVLSGNP 114

Query: 270 LT 271
           L 
Sbjct: 115 LH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 8e-09
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 114 DIRHLTI-HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN 172
           ++  L I +   L  +E   L  +  +L+ L +  + L  V   +      L +L L  N
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 173 RIALIEEGDFEGKALTQLDLSQNSL 197
            +  +     +G +L +L LS N L
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGNPL 115

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 1e-18
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 18/249 (7%)

Query: 118 LTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 177
            T    +L    +    +       L L    L + P     +L +L+ + +    +  +
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMEL 119

Query: 178 EEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH-NKISAL--------HSNA 228
            +   +   L  L L++N L  +P  ++ SLN L  L++    +++ L         S  
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE 288
            QGL  L+ L +    +  + P S   L + LK L +  + L+ +   ++  L  L +L+
Sbjct: 179 HQGLVNLQSLRLEWTGIRSL-PASIANL-QNLKSLKIRNSPLSALG-PAIHHLPKLEELD 235

Query: 289 LLH-NRIALIEEGDFEGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
           L     +       F G   L  L+L   + L T+P      L  L  L+L G    +  
Sbjct: 236 LRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRL 293

Query: 347 PAAFSGLEA 355
           P+  + L A
Sbjct: 294 PSLIAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 46/268 (17%), Positives = 85/268 (31%), Gaps = 25/268 (9%)

Query: 95  LKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNEL 150
                  L      +          L + +  L    +           L+ + +    L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ----AFRLSHLQHMTIDAAGL 116

Query: 151 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS-QNSLAVVPS------- 202
             +P  ++ +   L  L L  N +  +         L +L +     L  +P        
Sbjct: 117 MELPD-TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 203 -PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
               + L +L  L L    I +L ++    L  L+ L I  + LS +   +   L  KL+
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL-GPAIHHL-PKLE 232

Query: 262 RLNLGG-NELTRVPQTSLSKLENLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHNQLR 319
            L+L G   L   P         L++L L   + +  +       L  L+ L L      
Sbjct: 233 ELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNL 290

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDP 347
           +  P + A LP    + +  +    +D 
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 9/157 (5%)

Query: 185 KALTQLDLS-QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
                L      +L       L         + N    +   +N     +  +I T    
Sbjct: 12  SGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGR 66

Query: 244 KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE 303
            L           +     L L    L + P     +L +L+ + +    +  + +   +
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPD-TMQ 124

Query: 304 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
               L++L LA N LR +P    A L  L  L +   
Sbjct: 125 QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRAC 160

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 9/155 (5%)

Query: 188 TQLDLSQNSLAVVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL 245
           T +D      A VP+  P         IL L+ N+I+ L    F  L  L+ L +  N+L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ-----ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
             +    F  L  +L  L+LG N+LT +P     +L +L++L +  N++  +  G  E L
Sbjct: 77  GALPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERL 134

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
            +L  L L  NQL++IP   F  L  L    L GN
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 165 RKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
           + L L  N+I  +E G F+    L +L L  N L  +P     SL  L +L+L  N+++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN 283
           L S  F  L  L+ L +  NKL+ + P   + L   L  L L  N+L  +P  +  +L +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL-THLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 284 LRKLELLHN 292
           L    L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
           + L L  N++T++       L NL++L L  N++  +  G F+    LT LDL  N L V
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKK 259
           +PS     L HL  L +  NK++ L     + L  L  L + +N+L  I   +F  L   
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRL-SS 160

Query: 260 LKRLNLGGN 268
           L    L GN
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 94  YLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
            L L  N + KL   +F  L +++ L + ++ L  +      S+  +L  L+LG N+LT 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTNQLTV 102

Query: 153 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPA---LKSLN 209
           +P     +L +L++L +  N++  +  G      LT L L QN L  +P  A   L SL 
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 210 HLLILN 215
           H  +  
Sbjct: 163 HAYLFG 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 5e-18
 Identities = 61/285 (21%), Positives = 106/285 (37%), Gaps = 42/285 (14%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDI------RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG 147
            L L  N+L   +G +     +      + L + +++L    + S       L+ L+L  
Sbjct: 104 SLDLSRNSL---SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 148 NELTRVPQTSLSKLENLRKLELLH---NRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSP 203
           N ++          +   +L+ L    N+I+  ++        L  LD+S N+      P
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNF-STGIP 217

Query: 204 ALKSLNHLLILNLNHNKIS----------------ALHSNAFQG------LDTLEILTIF 241
            L   + L  L+++ NK+S                 + SN F G      L +L+ L++ 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277

Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIA-LIEE 299
           ENK +   PD   G    L  L+L GN     VP         L  L L  N  +  +  
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPM 336

Query: 300 GDFEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 343
                +  L  L L+ N+    +P  +      L +L+L  N+  
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 66/275 (24%), Positives = 99/275 (36%), Gaps = 28/275 (10%)

Query: 95  LKLRHNNLPKLTGFIFFGL----DIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGN 148
           + L    L      +   L     +  L + NS +      S+S       L  L+L  N
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI----NGSVSGFKCSASLTSLDLSRN 110

Query: 149 ELTRV--PQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLA---VVP 201
            L+      TSL     L+ L +  N +    +        +L  LDLS NS++   VV 
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 202 SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK 261
                    L  L ++ NKIS            LE L +  N  S   P         L+
Sbjct: 171 WVLSDGCGELKHLAISGNKIS--GDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDC-SALQ 226

Query: 262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF--EGLHNLDSLVLAHNQLR 319
            L++ GN+L+     ++S    L+ L +  N+      G      L +L  L LA N+  
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQF----VGPIPPLPLKSLQYLSLAENKFT 282

Query: 320 -TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
             IP  +      L  L+L GNH +   P  F   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 5e-16
 Identities = 56/220 (25%), Positives = 86/220 (39%), Gaps = 17/220 (7%)

Query: 134 SSIGKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLD 191
               K L+ L+L  N+ T  +P       + L  L+L  N     +         L  L 
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 192 LSQNSLA-VVPSPALKSLNHLLILNLNHNKIS-ALHSNAFQGLDTLEILTIFENKLS-LI 248
           LS N+ +  +P   L  +  L +L+L+ N+ S  L  +      +L  L +  N  S  I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 249 EPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEG----DFE 303
            P+  +  +  L+ L L  N  T ++P  +LS    L  L L  N +     G       
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYL----SGTIPSSLG 439

Query: 304 GLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHI 342
            L  L  L L  N L   IP     ++  L +L LD N +
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 6e-15
 Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 56/290 (19%)

Query: 94  YLKLRHNNLPKLTGFIFFGL--DIRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGGNE 149
           +L +  N +   +G +      ++  L + +++      + +  +G    L+ L++ GN+
Sbjct: 182 HLAISGNKI---SGDVDVSRCVNLEFLDVSSNNF----STGIPFLGDCSALQHLDISGNK 234

Query: 150 LTRVPQTSLSKLENLRKLELLHNRIALIEEG---DFEGKALTQLDLSQNSLA-VVPSPAL 205
           L+     ++S    L+ L +  N+      G       K+L  L L++N     +P    
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQF----VGPIPPLPLKSLQYLSLAENKFTGEIPDFLS 290

Query: 206 KSLNHLLILNLNHNKIS----------------ALHSNAFQG---------LDTLEILTI 240
            + + L  L+L+ N                   AL SN F G         +  L++L +
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 241 FENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQT-SLSKLENLRKLELLHNRIALIE 298
             N+ S   P+S   L   L  L+L  N  +  +      +    L++L L +N      
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF---- 406

Query: 299 EG----DFEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELDGNHIH 343
            G           L SL L+ N L  TIP      L  L  L+L  N + 
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 54/271 (19%)

Query: 134 SSIG--KKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRI-ALIEEGDFEGKALTQ 189
            ++    +L  L+L  N L+  +P  SL  L  LR L+L  N +   I +     K L  
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 190 LDLSQNSLA-VVPSPALKSLNHLLILNLNHNKIS----------------ALHSNAFQG- 231
           L L  N L   +P   L +  +L  ++L++N+++                 L +N+F G 
Sbjct: 471 LILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529

Query: 232 -------LDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG----------------- 267
                    +L  L +  N  +   P +      K+    + G                 
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589

Query: 268 ----NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR-TIP 322
                E   +    L++L       +            F+   ++  L +++N L   IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649

Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
                 +P L  L L  N I    P     L
Sbjct: 650 K-EIGSMPYLFILNLGHNDISGSIPDEVGDL 679

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.3 bits (203), Expect = 6e-18
 Identities = 48/269 (17%), Positives = 87/269 (32%), Gaps = 21/269 (7%)

Query: 90  LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSI--GKKLKRLNLGG 147
           L     ++           I   L ++ LT+  + +          +     L+ L L  
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 148 NELTRVPQTSLSKL--ENLRKLELLHNRIALIEE-----GDFEGKALTQLDLSQNSLAVV 200
            E+T      L +    +L  L L +   A  +        +    L  L ++Q      
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 201 PSPALKSLNHLLILNLNHNKISA----LHSNAFQGLDTLEILTIFENKLSLI--EPDSFK 254
               ++    L  L+L+ N        + +       TL++L +    +        +  
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 255 GLEKKLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
               +L+ L+L  N L       S      L  L L    +  + +G    L  LD   L
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---L 281

Query: 314 AHNQLRTIPPRVFAHLPLLNSLELDGNHI 342
           ++N+L   P      LP + +L L GN  
Sbjct: 282 SYNRLDRNPS--PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 37/230 (16%), Positives = 60/230 (26%), Gaps = 35/230 (15%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLH------NRIALIEEGDFEGKALTQLDL 192
            LKRL +    +         ++  +  L+ L          A     +  G  L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 193 SQNSLAVVPSPALK----SLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLI 248
              S A   +   +        L +L++             +    L  L + +N     
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-- 186

Query: 249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE---EGDFEGL 305
                               E   +      K   L+ L L +  +              
Sbjct: 187 -------------------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 306 HNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
             L  L L+HN LR             LNSL L    +  V     + L 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 21/216 (9%)

Query: 70  EFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI-----FFGLDIRHLTIHNSS 124
              + +        L   +G  +  L LR+ +      ++     +    ++ L+I  + 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 125 LAVVEESSLSSIGKKLKRLNLGGNELTR----VPQTSLSKLENLRKLELLHNRIALIEEG 180
                   +      L  L+L  N        +      K   L+ L L +  +      
Sbjct: 161 SLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 181 DFE----GKALTQLDLSQNSLAVVPSPALKS-LNHLLILNLNHNKISALHSNAFQGLDTL 235
                     L  LDLS NSL            + L  LNL+   +  +          L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KL 276

Query: 236 EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT 271
            +L +  N+L             ++  L+L GN   
Sbjct: 277 SVLDLSYNRLDRN---PSPDELPQVGNLSLKGNPFL 309

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)

Query: 261 KRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
             L L  NEL R+    L  +L +L KLEL  N++  IE   FEG  ++  L L  N+++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 320 TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            I  ++F  L  L +L L  N I  V P +F  L
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 236 EILTIFENKLSLIEPD-SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI 294
             L + +N+L  I  D  F  L   L +L L  N+LT +   +     ++++L+L  N+I
Sbjct: 32  TELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
             I    F GLH L +L L  NQ+  + P  F HL  L SL L  N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 165 RKLELLHNRIALIE-EGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS 222
            +L L  N +  I  +G F     L +L+L +N L  +   A +  +H+  L L  NKI 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 223 ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
            + +  F GL  L+ L +++N++S + P SF+ L   L  LNL  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 173
               L ++++ L  +    L      L +L L  N+LT +   +     ++++L+L  N+
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPA---LKSLNHLLILN 215
           I  I    F G   L  L+L  N ++ V   +   L SL  L + +
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
            ++ L LG N++  +       L  L+ L L  N+I+ +  G FE   +LT L+L+ N
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.5 bits (190), Expect = 9e-16
 Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 12/308 (3%)

Query: 38  CCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKL 97
           C  +   + C       P     +   L ++ +         T       S + +  L  
Sbjct: 247 CVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPA 306

Query: 98  RH--NNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQ 155
               + LP+ T  + +                      S+  ++L R  L   + T +  
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQS 366

Query: 156 TSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILN 215
             L   + L++LE  +    L        +AL  L   + +L    +  LK+++ +    
Sbjct: 367 -ELESCKELQELEPENKWCLLTIILLM--RALDPLLYEKETLQYFST--LKAVDPMRAAY 421

Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ 275
           L+  +   L  N+   ++  ++  +      L      + L   +  L+L  N L  +P 
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL-LLVTHLDLSHNRLRALPP 480

Query: 276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNS 334
            +L+ L  L  L+   N +  ++      L  L  L+L +N+L+     +     P L  
Sbjct: 481 -ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 335 LELDGNHI 342
           L L GN +
Sbjct: 538 LNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.6 bits (185), Expect = 3e-15
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 158 LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217
            +  E L + EL   +  +++      K L +L+       +     +++L+ LL     
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 218 HNKISALHSNAFQGLDTLEILTIFENK-LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
               S L     + +D +    + + +   L+E    K     ++ L+L   +LT +   
Sbjct: 405 LQYFSTL-----KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-- 457

Query: 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 336
            L +L  +  L+L HNR+  +       L  L+ L  + N L  +     A+LP L  L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELL 514

Query: 337 LDGNHIHTVD 346
           L  N +    
Sbjct: 515 LCNNRLQQSA 524

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 3e-13
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 16/211 (7%)

Query: 93  FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTR 152
           F  +L       L   +    +++ L   N    +     +    + L  L      L  
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM----RALDPLLYEKETLQY 407

Query: 153 VPQTSLSKLENLRKLELLHNRIALI---EEGDFEGKALTQLDLSQNSLAVVPSPALKSLN 209
              ++L  ++ +R   L   R   +        E   +  L L+   L V+    L+ L 
Sbjct: 408 F--STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLL 463

Query: 210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE 269
            +  L+L+HN++ AL       L  LE+L   +N L  ++      L  +L+ L L  N 
Sbjct: 464 LVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANL-PRLQELLLCNNR 519

Query: 270 LTRVPQ-TSLSKLENLRKLELLHNRIALIEE 299
           L +      L     L  L L  N +   E 
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 4e-12
 Identities = 43/226 (19%), Positives = 71/226 (31%), Gaps = 31/226 (13%)

Query: 65  LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSS 124
              L E     K       L  ++   + Y K        L                  S
Sbjct: 371 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---DLRS 427

Query: 125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 184
             ++E S L      ++ L+L   +LT +    L +L  +  L+L HNR+  +       
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAAL 485

Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
           + L  L  S N+L  V    + +L  L  L L +N++             ++ L      
Sbjct: 486 RCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ--------QSAAIQPLVSC--- 532

Query: 245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL 290
                         +L  LNL GN L +         E L  +  +
Sbjct: 533 -------------PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 7e-09
 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 12/211 (5%)

Query: 139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLA 198
            L   +L         +   +  ++ ++  LL +R           + L + +LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362

Query: 199 VVPS--PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
           V+ S   + K L  L   N        L   A   L   +    + + L  ++P      
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP------ 416

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             +   L+   ++          +  ++R L L H  + ++     E L  +  L L+HN
Sbjct: 417 -MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN 473

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
           +LR +PP   A L  L  L+   N +  VD 
Sbjct: 474 RLRALPP-ALAALRCLEVLQASDNALENVDG 503

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
             L L GN+ T VP   LS  ++L  ++L +NRI+ +    F  +  L +L+L++N+LR 
Sbjct: 34  TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           IPPR F  L  L  L L GN I  V   AF+ L
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
            +  L +  N+ +L+ P       K L  ++L  N ++ +   S S +  L  L L +NR
Sbjct: 32  DVTELYLDGNQFTLV-PKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           +  I    F+GL +L  L L  N +  +P   F  L  L+ L +  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
             L L GN+ T VP   LS  ++L  ++L +NRI+ +    F     L  L LS N L  
Sbjct: 34  TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
           +P      L  L +L+L+ N IS +   AF  L  L  L I  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
            +L L  N+  L+ +     K LT +DLS N ++ + + +  ++  LL L L++N++  +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
               F GL +L +L++  N +S++   +F  L   L  L +G N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL-SALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 95  LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
           L L  N    +   +     +  + + N+ ++ +   S S++  +L  L L  N L  +P
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYNRLRCIP 94

Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN 195
             +   L++LR L L  N I+++ EG F    AL+ L +  N
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.6 bits (174), Expect = 6e-14
 Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 37/248 (14%)

Query: 115 IRHLTIHNSSLAVVEESSLSSIG--KKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLH 171
           + +L +   +L        SS+     L  L +GG N L      +++KL  L  L + H
Sbjct: 52  VNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 172 NRIALIEEGDFEG---------KALTQLDLSQNSLA-VVPSPALKSLNHLLILNLNHNKI 221
                       G         K L  LD S N+L+  +P P++ SL +L+ +  + N+I
Sbjct: 111 TN--------VSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRI 161

Query: 222 SALHSNAFQGLDTL-EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLS 279
           S    +++     L   +TI  N+L+   P +F  L   L  ++L  N L          
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDAS-VLFG 218

Query: 280 KLENLRKLELLHNRIALIEEGD---FEGLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSL 335
             +N +K+ L  N +      D        NL+ L L +N++  T+P      L  L+SL
Sbjct: 219 SDKNTQKIHLAKNSL----AFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSL 273

Query: 336 ELDGNHIH 343
            +  N++ 
Sbjct: 274 NVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 43/171 (25%)

Query: 131 SSLSSIGKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNRIALIEEGD-----FEG 184
            S  S  K    + +  N LT ++P  + + L NL  ++L  N +    EGD        
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRNML----EGDASVLFGSD 220

Query: 185 KALTQLDLSQNSLA-VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
           K   ++ L++NSLA  +    +    +L  L+L +N+I         G       T+   
Sbjct: 221 KNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIY--------G-------TL--- 260

Query: 244 KLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNR 293
                 P     L K L  LN+  N L   +P      L+        +N+
Sbjct: 261 ------PQGLTQL-KFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR 293
           +   L +  NKL  +    F  L  +L +L+L  N++  +P     KL  L  L L  N+
Sbjct: 29  SATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           +  +  G F+ L  L  L L  NQL+++P  +F  L  L  + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 34/94 (36%), Positives = 46/94 (48%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
            RL L  N+L  +P     KL  L KL L  N+I  + +G F+ L  L  L L  N+L++
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
           +P  VF  L  L  L LD N + +V    F  L 
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
            RL L  N+L  +P     KL  L KL L  N+I  + +G F+    LT L L +N L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
           +P+     L  L  L L+ N++ ++    F  L +L+ + +  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 165 RKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA 223
            +LEL  N++  +  G F+    LT+L LSQN +  +P      L  L IL L+ NK+ +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN 268
           L +  F  L  L+ L +  N+L  +    F  L   L+++ L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTN 134

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 213 ILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR 272
           ++ L    I       +        L +   K+ +IE  +      +   ++   NE+ +
Sbjct: 1   MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRK 56

Query: 273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPL 331
           +       L  L+ L + +NRI  I EG  + L +L  L+L +N L  +      A L  
Sbjct: 57  L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 332 LNSLELDGN 340
           L  L +  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 29/150 (19%)

Query: 95  LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP 154
           +KL    + +   +    +  R L +    + V+E   L +   +   ++   NE+ ++ 
Sbjct: 2   VKLTAELIEQAAQYTNA-VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL- 57

Query: 155 QTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLIL 214
                 L  L+ L + +NRI  I EG  +                       +L  L  L
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQ-----------------------ALPDLTEL 93

Query: 215 NLNHNKISALHS-NAFQGLDTLEILTIFEN 243
            L +N +  L   +    L +L  L I  N
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
            + + L+L G ++  +     + L+    ++   N I  ++   F  L  L +L++ +N+
Sbjct: 19  VRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNR 75

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHI 342
           +  I   +   LP L  L L  N +
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 263 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP 322
           + L    + +  Q   +     R+L+L   +I +IE      L   D++  + N++R + 
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD 58

Query: 323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
              F  L  L +L ++ N I  +       L 
Sbjct: 59  G--FPLLRRLKTLLVNNNRICRIGEGLDQALP 88

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.4 bits (152), Expect = 9e-12
 Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 23/193 (11%)

Query: 164 LRKLELLHNRIALIEE---GDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK 220
           + K   + + I + EE            +L      +  + +  L +L     L L+ N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNN 59

Query: 221 ISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK 280
           I  +  ++  G++ L IL++  N +  IE      +   L+ L +  N++  +  + + K
Sbjct: 60  IEKI--SSLSGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASL--SGIEK 113

Query: 281 LENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIP----------PRVFAHL 329
           L NLR L + +N+I    E      L  L+ L+LA N L                V   L
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173

Query: 330 PLLNSLELDGNHI 342
           P L    LDG  +
Sbjct: 174 PNLKK--LDGMPV 184

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 130 ESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQ 189
           +++LS++ K  K L L  N + ++  +SLS +ENLR L L  N I  IE  D     L +
Sbjct: 41  DATLSTL-KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE 97

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFENKLS 246
           L +S N +A +    ++ L +L +L +++NKI+     +    LD LE L +  N L 
Sbjct: 98  LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
           K  K L L  N + ++  +SLS +ENLR L L  N I  IE  D      L+ L +++NQ
Sbjct: 48  KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQ 104

Query: 318 LRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
           + ++       L  L  L +  N I    
Sbjct: 105 IASLSG--IEKLVNLRVLYMSNNKITNWG 131

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 239 TIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI 297
           T  ++ + + E   S    E +   L+     + ++   +LS L+  + L L  N I  I
Sbjct: 5   TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKI 63

Query: 298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 347
                 G+ NL  L L  N ++ I   + A    L  L +  N I ++  
Sbjct: 64  S--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG 110

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 160 KLENLRKLELLHNRIAL--IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN 217
              ++++L L ++R     +E    E + L  L      L  + +  L  LN L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72

Query: 218 HNKISALHSNAFQGLDTLEILTIFENKL-SLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
            N++S       +    L  L +  NK+  L   +  K L + LK L+L   E+T +   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDY 131

Query: 277 SLSKLENLRKLELL 290
             +  + L +L  L
Sbjct: 132 RENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           +    ++ L +  ++ +  + +      ++L+ L+     LT +   +L KL  L+KLEL
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLEL 71

Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHI 342
             NR++   E   E   NL  L L+ N+++ +        L  L SL+L    +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 258 KKLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
             +K L L  +         L  + E L  L  ++  +  I   +   L+ L  L L+ N
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDN 74

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
           ++      +    P L  L L GN I  + 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 280 KLENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
              ++++L L ++R    + EG  +    L+ L   +  L +I       L  L  LEL 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELS 72

Query: 339 GNHIHTVDPAAFSGLE 354
            N +            
Sbjct: 73  DNRVSGGLEVLAEKCP 88

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L    +N  KL G      ++  L+  N  L  +   +L  +  KLK+L L  N ++  
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKL-NKLKKLELSDNRVSGG 79

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDF--EGKALTQLDLSQN 195
            +    K  NL  L L  N+I  +   +   + + L  LDL   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 5/144 (3%)

Query: 157 SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
           + + +  L  L+   +    IE    E   L  L L    L  V +  L  L  L  L L
Sbjct: 22  TPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLEL 78

Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQ 275
           + N+I        + L  L  L +  NKL  I   +  K L + LK L+L   E+T +  
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLND 137

Query: 276 TSLSKLENLRKLELLHNRIALIEE 299
              S  + L +L  L       +E
Sbjct: 138 YRESVFKLLPQLTYLDGYDREDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL 289
           +    +  L +   K +  + +        L+ L+L    L  V  ++L KL  L+KLEL
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLEL 78

Query: 290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHI 342
             NRI    +   E L NL  L L+ N+L+ I        L  L SL+L    +
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE--KKLKRLNLGGNE 269
           L+L+   +    +          LE L++    L  +       L    KLK+L L  N 
Sbjct: 29  LVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKKLELSENR 82

Query: 270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGD-FEGLHNLDSLVLAHNQLRTIP---PRV 325
           +         KL NL  L L  N++  I   +  + L  L SL L + ++  +      V
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 326 FAHLPLLNSL 335
           F  LP L  L
Sbjct: 143 FKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L    +N  K+ G     +++  L++ N  L  V   +L  +  KLK+L L  N +   
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKL-PKLKKLELSENRIFGG 86

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLA 198
                 KL NL  L L  N++  I   +     + L  LDL    + 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 281 LENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG 339
              +R+L L + +    + EG      NL+ L L +  L ++       LP L  LEL  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSE 80

Query: 340 NHIHTVDPAAFSGLE 354
           N I          L 
Sbjct: 81  NRIFGGLDMLAEKLP 95

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
             ++  G  L  VP    +     + L L  N+I  +E G F+ L  L  L L +NQL  
Sbjct: 12  TTVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           +P  VF  L  L  L L+ N + ++   AF  L
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 43/80 (53%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
           + L L  N++T++      +L  L +L+L +N++ ++  G F+ L  L  L L  NQL++
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 321 IPPRVFAHLPLLNSLELDGN 340
           IP   F +L  L  + L  N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
             ++  G  L  VP    +     + L L  N+I  +E G F+    LT+LDL  N L V
Sbjct: 12  TTVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
           +P+     L  L  L+LN N++ ++   AF  L +L  + +  N
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL 247
             L L  N +  +       L  L  L+L++N+++ L +  F  L  L  L++ +N+L  
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 248 IEPDSFKGLEKKLKRLNLGGN 268
           I   +F  L K L  + L  N
Sbjct: 93  IPRGAFDNL-KSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
             +N     L  VP    +   + ++L L +N+I  +E G F+ L NL  L    N+L  
Sbjct: 15  TLVNCQNIRLASVPAGIPT---DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71

Query: 321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
           IP  VF  L  L  L+L+ NH+ ++   AF  L
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT 320
           +RL L  N++T++       L NL++L    N++  I  G F+ L  L  L L  N L++
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 321 IPPRVFAHLPLLNSLELDGN 340
           IP   F +L  L  + L  N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV 199
             +N     L  VP    +   + ++L L +N+I  +E G F+    L QL  + N L  
Sbjct: 15  TLVNCQNIRLASVPAGIPT---DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN 243
           +P+     L  L  L+LN N + ++   AF  L +L  + ++ N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 7e-09
 Identities = 63/398 (15%), Positives = 133/398 (33%), Gaps = 112/398 (28%)

Query: 21  FG-SSLATSFLCLLLLLPCCLLQSVQQCPPHNE--ISPCQCSVKKNGLDILCEFTDNQKI 77
            G + +A            CL   VQ         ++   C+  +  L++L      QK+
Sbjct: 161 SGKTWVALD---------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------QKL 205

Query: 78  QHTMTTLKSKSGLIIFYLKLRHNNL-PKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSI 136
            + +    +        +KLR +++  +L   +           + + L V+     +  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYENCLLVLLNVQNAKA 258

Query: 137 GKKLKRLNLGGNEL--TRVPQ-TSLSKLENLRKLELLHNRIALIEEGDFEGKAL--TQLD 191
                  NL    L  TR  Q T          + L H+ + L  +   E K+L    LD
Sbjct: 259 ---WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD---EVKSLLLKYLD 312

Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISAL------HSNAFQGLDTLEILTIFENKL 245
                L   P   L +  +   L++    I+          + ++ ++  ++ TI E+ L
Sbjct: 313 CRPQDL---PREVLTT--NPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL-------ENLRKLELLHNRIALIE 298
           +++EP  ++ +  +L            +P   LS +       + +  +  LH   +L+E
Sbjct: 364 NVLEPAEYRKMFDRLSVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVE 418

Query: 299 EGDFEG---LHNL--------DSLVLAHNQLRT-------------IPPRV----FAHLP 330
           +   E    + ++        ++    H  +               IPP +    ++H+ 
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI- 477

Query: 331 LLNSLELDGNHIHTVDPAA-----------FSGLEAKV 357
                   G+H+  ++              F  LE K+
Sbjct: 478 --------GHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 40/192 (20%)

Query: 123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKL----ENLRKLELLHNRI---- 174
            +L  +  +  +     L+ +  G N L        +K       L  ++++ N I    
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 175 --ALIEEGDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNA 228
              L+ EG    + L  LDL  N+     +   + ALKS  +L  L LN   +SA     
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA----- 258

Query: 229 FQGLDTL-EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL-----SKLE 282
            +G   + +  +  EN                L+ L L  NE+      +L      K+ 
Sbjct: 259 -RGAAAVVDAFSKLEN--------------IGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 283 NLRKLELLHNRI 294
           +L  LEL  NR 
Sbjct: 304 DLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 52/256 (20%), Positives = 90/256 (35%), Gaps = 51/256 (19%)

Query: 138 KKLKRLNLGGNELTRVPQ----------TSLSKLENLRKLELLHNRI-----ALIEEGDF 182
           K L+          RV             +L K   L  + L  N         + +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 183 EGKALTQLDLSQNSL-------------AVVPSPALKSLNHLLILNLNHNKI---SALH- 225
           +   L  L L  N L              +  +   K+   L  +    N++   S    
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 226 SNAFQGLDTLEILTIFENKLSL--IEPDSFKGLE--KKLKRLNLGGNELTRVPQTSLSK- 280
           +  FQ    L  + + +N +    IE    +GL   ++LK L+L  N  T +  ++L+  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 281 ---LENLRKLELLHNRI------ALIEEGDFEGLHNLDSLVLAHNQL-----RTIPPRVF 326
                NLR+L L    +      A+++         L +L L +N++     RT+   + 
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 327 AHLPLLNSLELDGNHI 342
             +P L  LEL+GN  
Sbjct: 300 EKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 40/239 (16%), Positives = 70/239 (29%), Gaps = 48/239 (20%)

Query: 138 KKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRIALIEEGDFEG--------- 184
             +K + L GN +     R    +++  ++L   E        +++   E          
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 185 --KALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNAF-QGLDTLEI 237
               L  + LS N+            L     L  L L++N +         + L  L +
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL----ENLRKLELLHNR 293
               +N                L+ +  G N L        +K       L  ++++ N 
Sbjct: 152 NKKAKNA-------------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 294 I------ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA----HLPLLNSLELDGNHI 342
           I       L+ EG       L  L L  N    +     A      P L  L L+   +
Sbjct: 199 IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 54/228 (23%)

Query: 164 LRKLELLHNRI-----ALIEEGDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLIL 214
           +    L  + I       +     E  ++ ++ LS N++    A   S  + S   L I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 215 NLNHNKISALHSNAFQGLD----------TLEILTIFENKLSLIEPDSFKGLE------K 258
             +      +     + L            L  + + +N      P + + L        
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA---FGPTAQEPLIDFLSKHT 122

Query: 259 KLKRLNLGGNELT-------------RVPQTSLSKLENLRKLELLHNRI------ALIEE 299
            L+ L L  N L                          LR +    NR+         + 
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 300 GDFEGLHNLDSLVLAHNQLR-----TIPPRVFAHLPLLNSLELDGNHI 342
             F+    L ++ +  N +R      +     A+   L  L+L  N  
Sbjct: 183 --FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 45/260 (17%), Positives = 94/260 (36%), Gaps = 51/260 (19%)

Query: 113 LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT----RVPQTSLSKLENLRKLE 168
           LDI+ L I    L+    + L  + ++ + + L    LT    +   ++L     L +L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN-HLLILNLNHNKISALH-- 225
           L  N +     GD     +                 L++ +  +  L+L +  ++     
Sbjct: 63  LRSNEL-----GDVGVHCV--------------LQGLQTPSCKIQKLSLQNCCLTGAGCG 103

Query: 226 --SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK-------KLKRLNLGGNELTRVPQT 276
             S+  + L TL+ L + +N L        + L +       +L++L L    L+     
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLG---DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 277 SLSKL----ENLRKLELLHNRI-----ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA 327
            L+ +     + ++L + +N I      ++ +G  +    L++L L    + +   R   
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 328 ----HLPLLNSLELDGNHIH 343
                   L  L L  N + 
Sbjct: 221 GIVASKASLRELALGSNKLG 240

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 43/214 (20%), Positives = 66/214 (30%), Gaps = 39/214 (18%)

Query: 138 KKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRI------ALIEEGDFEGKAL 187
            +L+ L +    +T          L   E+L++L L  N +       L E     G  L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 188 TQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKIS-----ALHSNAFQGLDTLEIL 238
             L +   S         S  L     LL L +++N++       L     Q    L +L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 239 TIFENKLSLIEPDSFKGLE------KKLKRLNLGGNELTRVPQTSLSKL-----ENLRKL 287
            + +  +S     S   L         L+ L+L  N L       L +        L +L
Sbjct: 376 WLADCDVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTI 321
            L             E    L +L      LR I
Sbjct: 433 VLYDIYW------SEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 47/237 (19%)

Query: 133 LSSIGKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRI------ALIEEGDF 182
           L +   K+++L+L    LT     V  ++L  L  L++L L  N +       L E    
Sbjct: 80  LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD 139

Query: 183 EGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEIL 238
               L +L L   SL        +  L++      L +++N I+        G+  L   
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE------AGVRVL--- 190

Query: 239 TIFENKLSLIEPDSFKGLEKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRI 294
                          K    +L+ L L    +T    R     ++   +LR+L L  N++
Sbjct: 191 -----------CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 295 -----ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA----HLPLLNSLELDGNHI 342
                A +  G       L +L +    +                 L  L L GN +
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 49/258 (18%)

Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI------ALIEE 179
            + ++    +  LNL GN L       L ++      N+  L L  N +       L++ 
Sbjct: 44  QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103

Query: 180 GDFEGKALTQLDLSQNSL----AVVPSPALKSLN-HLLILNLNHNKIS-----ALHSNAF 229
                  +T LDL  N      +     A  +L   +  LNL  N +       L     
Sbjct: 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL-IQIL 162

Query: 230 QGLD-TLEILTIFENKLS------LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL- 281
             +   +  L +  N L+      L +      +   +  L+L  N L       L+ + 
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAK--FLASIPASVTSLDLSANLLGLKSYAELAYIF 220

Query: 282 ----ENLRKLELLHNRI-----ALIEEGDFEGLHNLDSLVLAHNQLRTIPPR-------V 325
                ++  L L  N +       ++    + L +L ++ L ++ ++ +           
Sbjct: 221 SSIPNHVVSLNLCLNCLHGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 326 FAHLPLLNSLELDGNHIH 343
           F ++  +  ++ +G  IH
Sbjct: 280 FPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI------ALIEE 179
             L++I   +  LNL GN L       L+K       ++  L+L  N +       L   
Sbjct: 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 180 GDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKISALH-------SNA 228
                  +  L+L  N L             SL HL  + L+++ +  +          A
Sbjct: 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279

Query: 229 FQGLDTLEILTIFENKLS----LIEPDSFKGLEKKLKRLNLGGNELT-----RVPQTSLS 279
           F  +  + ++     ++     +   +  + L  K    +L    L      +     L+
Sbjct: 280 FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339

Query: 280 KLENLRKLELLHNRI 294
             + LR+       +
Sbjct: 340 IPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 47/245 (19%), Positives = 84/245 (34%), Gaps = 53/245 (21%)

Query: 131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI------ALIEE 179
              +SI   +  L+L  N L  +    L +       ++  L L  N +       L++ 
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 180 GDFEGKALTQLDLSQNSL----AVVPSPALKSLN-HLLILNLNHNKISALHSNAF-QGLD 233
                  +T L+LS N L    +      L ++   + +L+L  N  S+  S+ F Q   
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 234 ----TLEILTIFENKLS------LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKL-- 281
               ++  L +  N L       LI+      +   +  LNL GN L       L+K   
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQ--ILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 282 ---ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD 338
               ++  L+L  N +        +    L + + +                 + SL L 
Sbjct: 193 SIPASVTSLDLSANLL------GLKSYAEL-AYIFSSIPNH------------VVSLNLC 233

Query: 339 GNHIH 343
            N +H
Sbjct: 234 LNCLH 238

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 51/315 (16%), Positives = 97/315 (30%), Gaps = 63/315 (20%)

Query: 68  LCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNL-PKLTGFIFFGL-----DIRHLTIH 121
             EF + +     +++L+         L L    + P     +   L      +  + + 
Sbjct: 58  HYEFQNQRFSAEVLSSLRQ--------LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA 109

Query: 122 NSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRI-- 174
           +  L      +L  +  + ++L L  N L       L  L       +  L L +N +  
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169

Query: 175 ---ALIEEGDFEGKALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKI------ 221
              A++ EG     ++T L L    L      + +  L     L  LN+ +N        
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229

Query: 222 ---SALHSNAFQGLDTLEILTIFENKLS------LIEPDSFKGLEKKLKRLNLGGNELTR 272
               A   +      +LE+L ++ N+LS      L +         ++      G  ++ 
Sbjct: 230 ALARAAREH-----PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284

Query: 273 VPQTSLSK-LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPL 331
                LS+   NL   +    +  L           L    L  ++  T+ P   A L  
Sbjct: 285 YWSVILSEVQRNLNSWDRARVQRHL----------ELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 332 LNS----LELDGNHI 342
           +      L       
Sbjct: 335 VEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 46/245 (18%), Positives = 75/245 (30%), Gaps = 36/245 (14%)

Query: 133 LSSIGKKLKRLNLGGNELTRVPQTSLSK-LENLRKLELLHNRI------ALIEEGDFEGK 185
           L S    L  +NL   +L      +L       RKL L  N +       L +    +  
Sbjct: 96  LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC 155

Query: 186 ALTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKI---------SALHSNAFQGL 232
            +T L LS N L      V    L     +  L+L H  +         + L  N     
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR---- 211

Query: 233 DTLEILTIFENKLSLIEPDSFKGL------EKKLKRLNLGGNELTRVPQTSLSKLENLRK 286
             L+ L +  N        +   L         L+ L+L  NEL+   +  L   +    
Sbjct: 212 -QLQELNVAYNG---AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR--DLGGA 265

Query: 287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 346
            E     +  + EG     +    L      L +           L   +L+ +   T++
Sbjct: 266 AEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLN 325

Query: 347 PAAFS 351
           P   +
Sbjct: 326 PWRKA 330

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 340
           +   LVL  N L  +PP +   LP L +  L  N
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.98
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.97
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.93
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.83
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.57
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.08
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.31
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	88.41

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=297.91  Aligned_cols=296  Identities=26%  Similarity=0.416  Sum_probs=257.7

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS  124 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~  124 (357)
                      .||.     .|.|....  ..+.|...+++.+|..+       +..++.|++++|.++.+++..|... +|++|++++|.
T Consensus         2 ~Cp~-----~C~C~~~~--~~v~c~~~~l~~ip~~~-------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   67 (477)
T 2id5_A            2 GCPP-----RCECSAQD--RAVLCHRKRFVAVPEGI-------PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI   67 (477)
T ss_dssp             CCST-----TCEEETTT--TEEECCSCCCSSCCSCC-------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cccC-----CCeECCCC--CEEEeCCCCcCcCCCCC-------CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc
Confidence            6999     69997643  38999999998887532       5788999999999999998888777 89999999999


Q ss_pred             cceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCcc
Q psy15002        125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSP  203 (357)
Q Consensus       125 l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~  203 (357)
                      ++.+.+.+|..+ ++|++|++++|.++.++...|.++++|++|++++|.++.+++..+. +++|++|++++|.+..+.+.
T Consensus        68 i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           68 VSAVEPGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             CCEECTTTTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             cCEeChhhhhCC-ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence            999999999988 6799999999999999998899999999999999999988766554 49999999999999999988


Q ss_pred             ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcccccc-----------------------ccc
Q psy15002        204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE-----------------------KKL  260 (357)
Q Consensus       204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-----------------------~~L  260 (357)
                      .|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+..+.+..|..+.                       .+|
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence            899999999999999999988887888888999999998888877665554441                       256


Q ss_pred             cEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCC
Q psy15002        261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN  340 (357)
Q Consensus       261 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N  340 (357)
                      +.|++++|.++.++...+..+++|++|++++|.++.+++..+.++++|+.|++++|+++++++..+.++++|+.|+|++|
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence            66666777788777667888999999999999999999988999999999999999999998888899999999999999


Q ss_pred             cccccCcccccCcccc
Q psy15002        341 HIHTVDPAAFSGLEAK  356 (357)
Q Consensus       341 ~l~~~~~~~~~~l~~l  356 (357)
                      .++++++..|..+++|
T Consensus       307 ~l~~~~~~~~~~l~~L  322 (477)
T 2id5_A          307 QLTTLEESVFHSVGNL  322 (477)
T ss_dssp             CCSCCCGGGBSCGGGC
T ss_pred             cCceeCHhHcCCCccc
Confidence            9999999988887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-36  Score=284.69  Aligned_cols=293  Identities=22%  Similarity=0.362  Sum_probs=220.1

Q ss_pred             cCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCC
Q psy15002         45 QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS  123 (357)
Q Consensus        45 ~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~  123 (357)
                      .+||.     .|.|...    .+.|...+++.+|. +       +..+++|++++|.++.+++..|... +|++|++++|
T Consensus         2 ~p~~~-----~c~~~~~----~~~c~~~~l~~lp~-l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n   64 (455)
T 3v47_A            2 DPGTS-----ECSVIGY----NAICINRGLHQVPE-L-------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ   64 (455)
T ss_dssp             ----------CCEEETT----EEECCSSCCSSCCC-C-------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC
T ss_pred             CCccc-----eeEEEcc----ccCcCCCCcccCCC-C-------CCccCEEEecCCccCcCChhHhccCccccEEECcCC
Confidence            45777     6999754    89999999988885 2       4788999999999999977777766 8999999999


Q ss_pred             Ccc-eecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccc-ccCC--CCCCCCCCeEECCCCCCee
Q psy15002        124 SLA-VVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEG--DFEGKALTQLDLSQNSLAV  199 (357)
Q Consensus       124 ~l~-~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~--~~~~~~L~~L~l~~n~l~~  199 (357)
                      .+. .+++..|.++ ++|++|++++|.++.+.+..|.++++|++|++++|.++. ++..  +...++|++|++++|.+..
T Consensus        65 ~~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  143 (455)
T 3v47_A           65 TPGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK  143 (455)
T ss_dssp             STTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS
T ss_pred             cccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc
Confidence            886 6777788887 679999999999999988889999999999999999985 3332  4445899999999999988


Q ss_pred             eCccc-cCCCCcCceeecccccCcccCcccCCCC----------------------------------CCCCEEEccCC-
Q psy15002        200 VPSPA-LKSLNHLLILNLNHNKISALHSNAFQGL----------------------------------DTLEILTIFEN-  243 (357)
Q Consensus       200 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l----------------------------------~~L~~L~L~~n-  243 (357)
                      +.+.. +..+++|++|++++|.+..+.+..+..+                                  ++|+.|++++| 
T Consensus       144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  223 (455)
T 3v47_A          144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG  223 (455)
T ss_dssp             CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred             cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence            86654 7888889999998888776655433221                                  33444444444 


Q ss_pred             --------------------------------------------------------------cCcccCCCcccccccccc
Q psy15002        244 --------------------------------------------------------------KLSLIEPDSFKGLEKKLK  261 (357)
Q Consensus       244 --------------------------------------------------------------~l~~~~~~~~~~~~~~L~  261 (357)
                                                                                    +++...+..+..+ ++|+
T Consensus       224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~  302 (455)
T 3v47_A          224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLE  302 (455)
T ss_dssp             CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCC
T ss_pred             ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCC
Confidence                                                                          4444444455555 6777


Q ss_pred             EEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCc
Q psy15002        262 RLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH  341 (357)
Q Consensus       262 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~  341 (357)
                      .|++++|.++++++..+..+++|++|++++|.++++++..+.++++|+.|++++|+++++++..+.++++|+.|++++|+
T Consensus       303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            77777777777766667777777777777777777777777777777777777777777777667777777788888777


Q ss_pred             ccccCcccccCcccc
Q psy15002        342 IHTVDPAAFSGLEAK  356 (357)
Q Consensus       342 l~~~~~~~~~~l~~l  356 (357)
                      +++++++.|..+++|
T Consensus       383 l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          383 LKSVPDGIFDRLTSL  397 (455)
T ss_dssp             CSCCCTTTTTTCTTC
T ss_pred             cccCCHhHhccCCcc
Confidence            777777776666544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=280.54  Aligned_cols=262  Identities=29%  Similarity=0.497  Sum_probs=171.0

Q ss_pred             cccccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEe
Q psy15002         41 LQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTI  120 (357)
Q Consensus        41 ~~~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l  120 (357)
                      .+.+..||.     .|.|....  ..+.|...+++.+|..+       +..                       ++.|++
T Consensus        29 ~~~~~~Cp~-----~C~C~~~~--~~v~c~~~~l~~iP~~~-------~~~-----------------------l~~L~L   71 (440)
T 3zyj_A           29 TGSAQTCPS-----VCSCSNQF--SKVICVRKNLREVPDGI-------STN-----------------------TRLLNL   71 (440)
T ss_dssp             ----CCCCS-----SSEECTTS--CEEECCSCCCSSCCSCC-------CTT-----------------------CSEEEC
T ss_pred             CcccccCCC-----CCEeCCCC--CEEEeCCCCcCcCCCCC-------CCC-----------------------CcEEEc
Confidence            344568998     69997543  37889887777666322       233                       444555


Q ss_pred             cCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCee
Q psy15002        121 HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV  199 (357)
Q Consensus       121 ~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~  199 (357)
                      ++|.++.+....|..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+.. ++|++|++++|++..
T Consensus        72 ~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           72 HENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             CSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             cCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            5555555554455544 45666666666666666666666666777777666666666654433 666777777777666


Q ss_pred             eCccccCCCCcCceeeccc-ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccc
Q psy15002        200 VPSPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL  278 (357)
Q Consensus       200 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  278 (357)
                      +++..|..+++|++|++++ +.+..+++..|.++++|+.|++++|+++.++  .+..+ ++|+.|++++|.++.+++..+
T Consensus       151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~  227 (440)
T 3zyj_A          151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPL-IKLDELDLSGNHLSAIRPGSF  227 (440)
T ss_dssp             ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTC-SSCCEEECTTSCCCEECTTTT
T ss_pred             cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCC-cccCEEECCCCccCccChhhh
Confidence            6666666677777777766 4555565556666777777777777766653  24444 567777777777777666667


Q ss_pred             cCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        279 SKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      ..+++|++|++++|+++.+++..|.++++|+.|+|++|+++.+++..+..+++|+.|+|++|+|.
T Consensus       228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            77777777777777777777666777777777777777777777766667777777777777653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=3.1e-35  Score=275.54  Aligned_cols=260  Identities=27%  Similarity=0.486  Sum_probs=175.7

Q ss_pred             cccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecC
Q psy15002         43 SVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHN  122 (357)
Q Consensus        43 ~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~  122 (357)
                      ....||.     .|.|....  ..+.|...+++.+|..+       +..+                       ++|++++
T Consensus        42 ~~~~Cp~-----~C~C~~~~--~~v~c~~~~l~~iP~~~-------~~~l-----------------------~~L~L~~   84 (452)
T 3zyi_A           42 GPQNCPS-----VCSCSNQF--SKVVCTRRGLSEVPQGI-------PSNT-----------------------RYLNLME   84 (452)
T ss_dssp             --CCCCT-----TSEECSSS--CEEECCSSCCSSCCSCC-------CTTC-----------------------SEEECCS
T ss_pred             CcCCCCC-----CCEECCCC--cEEEECCCCcCccCCCC-------CCCc-----------------------cEEECcC
Confidence            3568998     69997542  37889888877666321       2344                       4555555


Q ss_pred             CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeC
Q psy15002        123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVP  201 (357)
Q Consensus       123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~  201 (357)
                      |.++.+.+..|..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. +++|++|++++|+++.++
T Consensus        85 n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  163 (452)
T 3zyi_A           85 NNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP  163 (452)
T ss_dssp             SCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred             CcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence            55555544455544 4577777777777766666666777777777777777766666444 366777777777777776


Q ss_pred             ccccCCCCcCceeeccc-ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002        202 SPALKSLNHLLILNLNH-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK  280 (357)
Q Consensus       202 ~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  280 (357)
                      ...|..+++|+.|++++ +.+..++...|.++++|+.|++++|+++.++  .+..+ ++|+.|++++|.++++++..+..
T Consensus       164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPL-VGLEELEMSGNHFPEIRPGSFHG  240 (452)
T ss_dssp             TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTC-TTCCEEECTTSCCSEECGGGGTT
T ss_pred             HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--ccccc-ccccEEECcCCcCcccCcccccC
Confidence            66677777777777776 4566666666677777777777777776653  24444 57777777777777776667777


Q ss_pred             CCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        281 LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       281 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      +++|+.|++++|+++.+++..|.++++|+.|+|++|+++++++..+..+++|+.|+|++|+|.
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            777777777777777777777777777777777777777777777777777777777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.4e-34  Score=257.60  Aligned_cols=288  Identities=21%  Similarity=0.376  Sum_probs=247.0

Q ss_pred             ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecC
Q psy15002         44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHN  122 (357)
Q Consensus        44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~  122 (357)
                      ...||.     .|.|...    .+.|...+++.+|..       .+..+++|++++|.++.++...|... +|++|++++
T Consensus        22 ~~~cp~-----~c~c~l~----~l~~~~~~l~~lp~~-------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   85 (330)
T 1xku_A           22 GPVCPF-----RCQCHLR----VVQCSDLGLEKVPKD-------LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN   85 (330)
T ss_dssp             CCCCCT-----TCEEETT----EEECTTSCCCSCCCS-------CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCCC-----CCcCCCe----EEEecCCCccccCcc-------CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCC
Confidence            457998     6999765    899998888776643       24678999999999999999877766 899999999


Q ss_pred             CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCee--
Q psy15002        123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAV--  199 (357)
Q Consensus       123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~--  199 (357)
                      |.++.+.+..+..+ ++|++|++++|.++.++...+   ++|++|++++|.++.+++..+. .++|++|++++|.+..  
T Consensus        86 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A           86 NKISKISPGAFAPL-VKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             SCCCCBCTTTTTTC-TTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             CcCCeeCHHHhcCC-CCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence            99999988888887 679999999999998876543   7899999999999988876544 5999999999999975  


Q ss_pred             eCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002        200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS  279 (357)
Q Consensus       200 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  279 (357)
                      +.+..+..+++|++|++++|.++.++...+   ++|+.|++++|+++.+.+..+..+ ++|+.|++++|.++.+++..+.
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGG
T ss_pred             cChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhcc
Confidence            566788899999999999999998755432   799999999999999988888888 8999999999999999887888


Q ss_pred             CCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC------CCCCcEEeCCCCcccc--cCccccc
Q psy15002        280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH------LPLLNSLELDGNHIHT--VDPAAFS  351 (357)
Q Consensus       280 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~N~l~~--~~~~~~~  351 (357)
                      .+++|++|++++|.++.++. .+..+++|+.|++++|+++++++..|..      .+.++.+++++|++..  +.+..|.
T Consensus       238 ~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          238 NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             GSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            99999999999999998876 5778999999999999999999877753      3788999999999865  7788888


Q ss_pred             Ccccc
Q psy15002        352 GLEAK  356 (357)
Q Consensus       352 ~l~~l  356 (357)
                      .++.+
T Consensus       317 ~~~~l  321 (330)
T 1xku_A          317 CVYVR  321 (330)
T ss_dssp             TCCCG
T ss_pred             cccce
Confidence            76643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.8e-34  Score=259.54  Aligned_cols=287  Identities=25%  Similarity=0.410  Sum_probs=248.3

Q ss_pred             ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecC
Q psy15002         44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHN  122 (357)
Q Consensus        44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~  122 (357)
                      ...||.     .|.|...    .+.|...+++.+|..+       +..+++|++++|.++.+++..|... +|++|++++
T Consensus        24 ~~~cp~-----~c~c~l~----~l~~~~~~l~~ip~~~-------~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~   87 (332)
T 2ft3_A           24 SAMCPF-----GCHCHLR----VVQCSDLGLKAVPKEI-------SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN   87 (332)
T ss_dssp             -CCCCS-----SCEEETT----EEECCSSCCSSCCSCC-------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             cCCCCC-----CCcccCC----EEECCCCCccccCCCC-------CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence            456887     6999765    8999988887776432       4678999999999999988777776 899999999


Q ss_pred             CCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCee--
Q psy15002        123 SSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAV--  199 (357)
Q Consensus       123 ~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~--  199 (357)
                      |.++.+.+..+..+ ++|++|++++|.++.++...+   ++|++|++++|.++.+++..+. .++|++|++++|.++.  
T Consensus        88 n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A           88 NKISKIHEKAFSPL-RKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             SCCCEECGGGSTTC-TTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             CccCccCHhHhhCc-CCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence            99999988888888 679999999999998887643   7999999999999999887554 5999999999999974  


Q ss_pred             eCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002        200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS  279 (357)
Q Consensus       200 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  279 (357)
                      +.+..+..+ +|+.|++++|+++.++...+   ++|+.|++++|.++.+.+..+..+ ++|+.|++++|.++.+++..+.
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhh
Confidence            566677777 99999999999998755432   799999999999999988888888 8999999999999999988899


Q ss_pred             CCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC------CCCCcEEeCCCCccc--ccCccccc
Q psy15002        280 KLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH------LPLLNSLELDGNHIH--TVDPAAFS  351 (357)
Q Consensus       280 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~N~l~--~~~~~~~~  351 (357)
                      .+++|++|++++|+++.++. .+..+++|+.|++++|+++.++...|..      .+.|+.+++++|++.  ++.+..|.
T Consensus       239 ~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~  317 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR  317 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred             CCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence            99999999999999998877 4778999999999999999999877665      367899999999998  78899998


Q ss_pred             Ccccc
Q psy15002        352 GLEAK  356 (357)
Q Consensus       352 ~l~~l  356 (357)
                      .++.|
T Consensus       318 ~l~~L  322 (332)
T 2ft3_A          318 CVTDR  322 (332)
T ss_dssp             TBCCS
T ss_pred             ccchh
Confidence            88765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=265.98  Aligned_cols=288  Identities=17%  Similarity=0.211  Sum_probs=241.1

Q ss_pred             cccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEec
Q psy15002         43 SVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIH  121 (357)
Q Consensus        43 ~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~  121 (357)
                      .+..|+.     .|.|....   .++|...+++++|..+       +..+++|++++|.++.++...|... +|++|+++
T Consensus        20 ~~~~~~~-----~~~C~~~~---~c~~~~~~l~~iP~~~-------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~   84 (353)
T 2z80_A           20 EESSNQA-----SLSCDRNG---ICKGSSGSLNSIPSGL-------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT   84 (353)
T ss_dssp             ------------CCEECTTS---EEECCSTTCSSCCTTC-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccCCCcc-----CCCCCCCe---EeeCCCCCcccccccc-------cccCcEEECCCCcCcccCHHHhccCCCCCEEECC
Confidence            3445666     57887654   5778888888877543       4678999999999999999777766 99999999


Q ss_pred             CCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccC-C-CCCCCCCCeEECCCC-CCe
Q psy15002        122 NSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE-G-DFEGKALTQLDLSQN-SLA  198 (357)
Q Consensus       122 ~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~~~L~~L~l~~n-~l~  198 (357)
                      +|.++.+.+..+..+ ++|++|++++|.++.+++..+.++++|++|++++|.++.++. . +...++|++|++++| .+.
T Consensus        85 ~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           85 SNGINTIEEDSFSSL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             TSCCCEECTTTTTTC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             CCccCccCHhhcCCC-CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc
Confidence            999999998888888 679999999999999999889999999999999999999988 4 445699999999999 588


Q ss_pred             eeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccc
Q psy15002        199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSL  278 (357)
Q Consensus       199 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  278 (357)
                      .+++..+.++++|++|++++|.+..+.+..+..+++|++|++++|+++.++...+..+ ++|+.|++++|.+++.+...+
T Consensus       164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l  242 (353)
T 2z80_A          164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSEL  242 (353)
T ss_dssp             EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC--
T ss_pred             ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCcccccccccc
Confidence            8988899999999999999999999988999999999999999999987765555455 799999999999998765433


Q ss_pred             c---CCCCCcEEEccCCcCcee----CcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        279 S---KLENLRKLELLHNRIALI----EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       279 ~---~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      .   ..+.++.++++++.+++.    .+..+..+++|+.|++++|+++.+|...+.++++|+.|++++|++.+..+
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            2   456788899988887652    12356778999999999999999999888999999999999999987543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.8e-34  Score=277.12  Aligned_cols=282  Identities=22%  Similarity=0.322  Sum_probs=210.0

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS  124 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~  124 (357)
                      .|+.     .|.|.....  .++|...+++++|..+       +..+++|++++|.++.+++..|... +|++|++++|.
T Consensus         3 ~~~~-----~C~~~~~~~--~~~c~~~~l~~iP~~l-------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   68 (606)
T 3t6q_A            3 SSDQ-----KCIEKEVNK--TYNCENLGLNEIPGTL-------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ   68 (606)
T ss_dssp             ---C-----CCEEEETTT--EEECTTSCCSSCCTTS-------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC
T ss_pred             cccC-----ceecccCCc--eEECCCCCcccCcCCC-------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc
Confidence            5776     699976433  8999999998888543       5678999999999999988888777 99999999999


Q ss_pred             cceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCC-CCCCCCCCeEECCCCCCeeeCcc
Q psy15002        125 LAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGKALTQLDLSQNSLAVVPSP  203 (357)
Q Consensus       125 l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~  203 (357)
                      +..+.+.+|..+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.+++. +...++|++|++++|++..++..
T Consensus        69 i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (606)
T 3t6q_A           69 IYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP  147 (606)
T ss_dssp             CCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cceeChhhccCc-cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc
Confidence            999999999988 6799999999999999888999999999999999999988544 44559999999999999988655


Q ss_pred             ccCCCCcCceeecccccCcccCcccCCCCCCCC--EEEccCCcCcccCCCccccc-------------------------
Q psy15002        204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLE--ILTIFENKLSLIEPDSFKGL-------------------------  256 (357)
Q Consensus       204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~-------------------------  256 (357)
                      .+..+++|++|++++|.+..+.+..+..+++|+  .|++++|.++.+.+..+...                         
T Consensus       148 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l  227 (606)
T 3t6q_A          148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI  227 (606)
T ss_dssp             TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEE
T ss_pred             cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccch
Confidence            666689999999999999988887788888888  78888888777655443220                         


Q ss_pred             -------------------------cccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEe
Q psy15002        257 -------------------------EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL  311 (357)
Q Consensus       257 -------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  311 (357)
                                               ..+++.|++++|.++.+++..+..+++|++|++++|.++.++. .+.++++|+.|
T Consensus       228 ~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L  306 (606)
T 3t6q_A          228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKL  306 (606)
T ss_dssp             EEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEE
T ss_pred             hheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEE
Confidence                                     0145556666666666655555666666666666666665544 34455566666


Q ss_pred             ecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       312 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      ++++|+++++++..+..+++|+.|++++|.+.
T Consensus       307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  338 (606)
T 3t6q_A          307 VLSANKFENLCQISASNFPSLTHLSIKGNTKR  338 (606)
T ss_dssp             ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred             ECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence            66666555554444444444555555544444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-33  Score=275.77  Aligned_cols=158  Identities=25%  Similarity=0.391  Sum_probs=137.6

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL  133 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~  133 (357)
                      +|.|...  ...++|...++++||..+       |..+++|+|++|.|+.+++..|... +|++|++++|.++.+++.+|
T Consensus        26 ~c~~~~~--~~~~~c~~~~l~~vP~~l-------p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           26 PCVEVVP--NITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             CSEEEET--TTEEECTTSCCSSCCSSS-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             CccccCC--CCEEECCCCCcCccCCCC-------CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh
Confidence            6888754  348999999999988543       6789999999999999999999887 99999999999999999999


Q ss_pred             ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeC-ccccCCCCcC
Q psy15002        134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVP-SPALKSLNHL  211 (357)
Q Consensus       134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~-~~~~~~l~~L  211 (357)
                      .++ ++|++|++++|+++.+++..|.++++|++|++++|.++.+++..+. +++|++|++++|.++.+. +..+..+++|
T Consensus        97 ~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A           97 QSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             TTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             cCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence            988 6799999999999999999999999999999999999999887654 489999999999988764 3566778888


Q ss_pred             ceeecccccCc
Q psy15002        212 LILNLNHNKIS  222 (357)
Q Consensus       212 ~~L~l~~n~l~  222 (357)
                      ++|++++|+++
T Consensus       176 ~~L~L~~N~l~  186 (635)
T 4g8a_A          176 EHLDLSSNKIQ  186 (635)
T ss_dssp             CEEECCSSCCC
T ss_pred             hhhcccCcccc
Confidence            88888877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=100.00  E-value=3.1e-34  Score=255.07  Aligned_cols=288  Identities=21%  Similarity=0.325  Sum_probs=189.2

Q ss_pred             CCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCc
Q psy15002         47 CPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSL  125 (357)
Q Consensus        47 Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l  125 (357)
                      ||.     +|.|...    .+.|...+++++|..+       +..+++|++++|.++.++...|... +|++|++++|.+
T Consensus         1 CP~-----~C~C~~~----~l~c~~~~l~~ip~~~-------~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l   64 (306)
T 2z66_A            1 CPS-----RCSCSGT----EIRCNSKGLTSVPTGI-------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL   64 (306)
T ss_dssp             CCT-----TCEEETT----EEECCSSCCSSCCSCC-------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CcC-----CCeeCCC----EEEcCCCCcccCCCCC-------CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc
Confidence            888     6999865    8999988888777432       4677888888888888888777655 777777777777


Q ss_pred             ceec--CcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccC--CCCCCCCCCeEECCCCCCeeeC
Q psy15002        126 AVVE--ESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE--GDFEGKALTQLDLSQNSLAVVP  201 (357)
Q Consensus       126 ~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~  201 (357)
                      +.+.  +..+..+ ++|++|++++|.++.++.. +.++++|++|++++|.++.++.  .+...++|++|++++|.+..+.
T Consensus        65 ~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           65 SFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CEEEEEEHHHHSC-SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             CcccCcccccccc-cccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            6543  2233333 4577777777777766553 6677777777777777776654  3334467777777777777666


Q ss_pred             ccccCCCCcCceeecccccCcc-cCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002        202 SPALKSLNHLLILNLNHNKISA-LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK  280 (357)
Q Consensus       202 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  280 (357)
                      +..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|+++.+.+..+..+ ++|+.|++++|.++.+++..+..
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTT
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC-CCCCEEECCCCccCccChhhccC
Confidence            6666677777777777776665 345566667777777777777776666666665 56777777777777666655666


Q ss_pred             CCCCcEEEccCCcCceeCcCcCCCCC-CCCEeecCCCcCcccCc--ccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002        281 LENLRKLELLHNRIALIEEGDFEGLH-NLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       281 l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      +++|++|++++|.+++..+..+..++ +|+.|++++|.+.....  +....+...+.+.+..+.+....|..+.+.
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence            67777777777777766666666553 67777777776654321  111122333444455555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=9.4e-33  Score=248.37  Aligned_cols=276  Identities=24%  Similarity=0.350  Sum_probs=232.0

Q ss_pred             EecccCChhhHHHHHhhh-ccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEc
Q psy15002         67 ILCEFTDNQKIQHTMTTL-KSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL  145 (357)
Q Consensus        67 ~~C~~~~l~~i~~~~~~~-~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~l  145 (357)
                      ..+....+.++|..+... +......++.++++++.++.+|...+  .+++.|++++|.++.+.+..+..+ ++|++|++
T Consensus         9 ~~~~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L   85 (332)
T 2ft3_A            9 TTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGL-QHLYALVL   85 (332)
T ss_dssp             ----------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTC-TTCCEEEC
T ss_pred             cccCCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCC-CCCcEEEC
Confidence            344444555555443222 11111456789999999999998765  478999999999999998888888 67999999


Q ss_pred             cCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc--
Q psy15002        146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA--  223 (357)
Q Consensus       146 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--  223 (357)
                      ++|.++.+.+..|.++++|++|++++|.++.+|..++  ++|++|++++|++..+++..+..+++|+.|++++|.++.  
T Consensus        86 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A           86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             CCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence            9999999988899999999999999999999998877  799999999999999998889999999999999999964  


Q ss_pred             cCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC
Q psy15002        224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE  303 (357)
Q Consensus       224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  303 (357)
                      ..+..+..+ +|+.|++++|+++.++...+    ++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+.
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            667778777 99999999999998755432    6899999999999999988899999999999999999999988899


Q ss_pred             CCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002        304 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      .+++|+.|++++|+++.+|.. +..+++|+.|++++|+++++++..|+..
T Consensus       239 ~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             CCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChhHcccc
Confidence            999999999999999998876 5789999999999999999999988764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.6e-33  Score=272.19  Aligned_cols=290  Identities=27%  Similarity=0.362  Sum_probs=213.6

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL  133 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~  133 (357)
                      +|.|...    .++|...+++++|..+       +..+++|++++|.++.++...|... +|++|++++|.++.+.+.++
T Consensus         1 ~C~~~~~----~~~cs~~~L~~ip~~~-------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   69 (680)
T 1ziw_A            1 KCTVSHE----VADCSHLKLTQVPDDL-------PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC   69 (680)
T ss_dssp             ---CBSS----EEECCSSCCSSCCSCS-------CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH
T ss_pred             CceeECC----eeECCCCCcccccccc-------CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH
Confidence            4888743    8999999998877432       4789999999999999999888776 89999999999999998888


Q ss_pred             ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCc
Q psy15002        134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLL  212 (357)
Q Consensus       134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  212 (357)
                      ..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+ .+++|++|++++|.++.+++..+.++++|+
T Consensus        70 ~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  148 (680)
T 1ziw_A           70 QKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ  148 (680)
T ss_dssp             HHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred             hcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence            888 679999999999999998889999999999999999999886654 459999999999999988888888999999


Q ss_pred             eeecccccCcccCcccCC--CCCCCCEEEccCCcCcccCCCcccccc--------------------------cc-----
Q psy15002        213 ILNLNHNKISALHSNAFQ--GLDTLEILTIFENKLSLIEPDSFKGLE--------------------------KK-----  259 (357)
Q Consensus       213 ~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------------------~~-----  259 (357)
                      +|++++|.++.+.+..+.  .+++|+.|++++|.++++.+..+..+.                          ++     
T Consensus       149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~  228 (680)
T 1ziw_A          149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS  228 (680)
T ss_dssp             EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred             EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence            999999988877665443  446788888888777766554433210                          12     


Q ss_pred             ---------------------ccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcC
Q psy15002        260 ---------------------LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL  318 (357)
Q Consensus       260 ---------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  318 (357)
                                           |+.|++++|.++.+++..+..+++|++|++++|.++++.+..+.++++|+.|++++|..
T Consensus       229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~  308 (680)
T 1ziw_A          229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT  308 (680)
T ss_dssp             CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred             ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence                                 55555555555555555555555566666666555555554455555555555544322


Q ss_pred             c---------ccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        319 R---------TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       319 ~---------~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      .         .+....+..+++|+.|++++|.++++++..|.++++|
T Consensus       309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  355 (680)
T 1ziw_A          309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL  355 (680)
T ss_dssp             CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred             hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence            2         1222245566777788888888888877777776554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=5.5e-32  Score=243.16  Aligned_cols=253  Identities=24%  Similarity=0.400  Sum_probs=230.2

Q ss_pred             eEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002         91 IIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  170 (357)
Q Consensus        91 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  170 (357)
                      .++.++++++.++.+|....  .+++.|++++|.++.+++..+..+ ++|++|++++|.++.+.+..|.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            45689999999999997654  478999999999999998888888 679999999999999988889999999999999


Q ss_pred             CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc--cCcccCCCCCCCCEEEccCCcCccc
Q psy15002        171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA--LHSNAFQGLDTLEILTIFENKLSLI  248 (357)
Q Consensus       171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~  248 (357)
                      +|.++.+|..++  ++|++|++++|.+..+++..+.++++|++|++++|.+..  ..+..+..+++|+.|++++|+++.+
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            999999998776  799999999999999998889999999999999999864  6677888999999999999999987


Q ss_pred             CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002        249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH  328 (357)
Q Consensus       249 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  328 (357)
                      +...+    ++|+.|++++|.++.+++..+..+++|++|++++|.++++++..+..+++|+.|++++|+++.+|.. +..
T Consensus       187 ~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~  261 (330)
T 1xku_A          187 PQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LAD  261 (330)
T ss_dssp             CSSCC----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTT
T ss_pred             Ccccc----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hcc
Confidence            55432    6899999999999999888899999999999999999999988899999999999999999988875 578


Q ss_pred             CCCCcEEeCCCCcccccCcccccCc
Q psy15002        329 LPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       329 ~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      +++|+.|++++|+++++++..|+..
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             CCCcCEEECCCCcCCccChhhcCCc
Confidence            8999999999999999999998654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-32  Score=264.47  Aligned_cols=157  Identities=20%  Similarity=0.314  Sum_probs=109.4

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL  133 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~  133 (357)
                      ||.|...  ...++|.+.+++.+|..+       +..+++|++++|.++.++...|... +|++|++++|.++.+.+.+|
T Consensus         6 ~c~~~~~--~~~~~c~~~~l~~ip~~~-------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~   76 (606)
T 3vq2_A            6 PCIEVVP--NITYQCMDQKLSKVPDDI-------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW   76 (606)
T ss_dssp             CCEEEET--TTEEECTTSCCSSCCTTS-------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             CceecCC--CCceEccCCCcccCCCCC-------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh
Confidence            5777533  348999999999888643       4677888888888888888777666 78888888888888877777


Q ss_pred             ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCC-CCCCCCCCeEECCCCCCeeeC-ccccCCCCcC
Q psy15002        134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGKALTQLDLSQNSLAVVP-SPALKSLNHL  211 (357)
Q Consensus       134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L  211 (357)
                      ..+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.+++. +..+++|++|++++|.+..+. +..+.++++|
T Consensus        77 ~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  155 (606)
T 3vq2_A           77 HGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL  155 (606)
T ss_dssp             TTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred             hch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence            777 5688888888888887777777777777777777777666533 333356666666666555422 3345555555


Q ss_pred             ceeecccccC
Q psy15002        212 LILNLNHNKI  221 (357)
Q Consensus       212 ~~L~l~~n~l  221 (357)
                      ++|++++|++
T Consensus       156 ~~L~Ls~n~l  165 (606)
T 3vq2_A          156 VHVDLSYNYI  165 (606)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEEccCCcc
Confidence            5555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=5.6e-32  Score=238.05  Aligned_cols=236  Identities=25%  Similarity=0.374  Sum_probs=158.7

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCc
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSL  125 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l  125 (357)
                      +||.     .|.|.... ...++|...+++.+|.                            ...  .++++|++++|.+
T Consensus         1 ~CP~-----~C~C~~~~-~~~~~c~~~~l~~ip~----------------------------~~~--~~l~~L~l~~n~i   44 (285)
T 1ozn_A            1 PCPG-----ACVCYNEP-KVTTSCPQQGLQAVPV----------------------------GIP--AASQRIFLHGNRI   44 (285)
T ss_dssp             CCCT-----TCEEECSS-SCEEECCSSCCSSCCT----------------------------TCC--TTCSEEECTTSCC
T ss_pred             CcCC-----CceECCCC-CeEEEcCcCCcccCCc----------------------------CCC--CCceEEEeeCCcC
Confidence            5999     69997542 3577887766655542                            111  2455555555555


Q ss_pred             ceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-cccccCCCC-CCCCCCeEECCCCCCeeeCcc
Q psy15002        126 AVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDF-EGKALTQLDLSQNSLAVVPSP  203 (357)
Q Consensus       126 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~  203 (357)
                      +.+++..+..+ ++|++|++++|.++.+.+..|.++++|++|++++|. ++.+++..+ ..++|++|++++|.++.+++.
T Consensus        45 ~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  123 (285)
T 1ozn_A           45 SHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG  123 (285)
T ss_dssp             CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh
Confidence            55555555555 567777777777777776677777777777777776 666644433 347777777777777776666


Q ss_pred             ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCC
Q psy15002        204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN  283 (357)
Q Consensus       204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  283 (357)
                      .+..+++|++|++++|.++.+++..+..+++|+.|++++|+++.+++..+..+ ++|+.|++++|.++++.+..+..+++
T Consensus       124 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcccccCHhHccCccc
Confidence            66777777777777777776666666667777777777777776666556665 66777777777777666566666677


Q ss_pred             CcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        284 LRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       284 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      |++|++++|.++++++..+..+++|+.|++++|.+.
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            777777777777766656666677777777777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.7e-32  Score=260.17  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             ceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccc
Q psy15002         56 CQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLS  134 (357)
Q Consensus        56 C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~  134 (357)
                      |.|...   ..++|...+++.+|..+       +..+++|++++|.++.+++..|... +|++|++++|.++.+.+.+|.
T Consensus        28 ~~~~~~---~~l~ls~~~L~~ip~~~-------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           28 FSNELE---SMVDYSNRNLTHVPKDL-------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             -----C---CEEECTTSCCCSCCTTS-------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred             cccCCC---cEEEcCCCCCccCCCCC-------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence            566543   38999999998877533       4788999999999999998888777 899999999999999988888


Q ss_pred             cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccccc--CCCCCCCCCCeEECCCCCCe
Q psy15002        135 SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE--EGDFEGKALTQLDLSQNSLA  198 (357)
Q Consensus       135 ~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~L~~L~l~~n~l~  198 (357)
                      .+ ++|++|++++|.++.++..   .+++|++|++++|.++.++  ..+..+++|++|++++|+++
T Consensus        98 ~l-~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B           98 FN-QDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TC-TTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CC-CCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            88 6799999999999988765   7888888888888888765  34555577777777777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-32  Score=250.58  Aligned_cols=259  Identities=20%  Similarity=0.303  Sum_probs=183.8

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..+++|+++++.++.+|...|... +|++|++++|.++.+++..+..+ ++|++|++++|.++.+++..|.++++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            567788888888888888877655 78888888888888888778777 6688888888888888888888888888888


Q ss_pred             ccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCC---------------
Q psy15002        169 LLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL---------------  232 (357)
Q Consensus       169 l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l---------------  232 (357)
                      +++|.++.+|..++. .++|++|++++|.+..+++..+..+++|++|++++|.++.+....+..+               
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~  203 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  203 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence            888888888887654 5888888888888888887778888888888888888876643333222               


Q ss_pred             ----------------------CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002        233 ----------------------DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  290 (357)
Q Consensus       233 ----------------------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  290 (357)
                                            ++|+.|++++|+++..  ..+..+ ++|+.|++++|.++++.+..+..+++|++|+++
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence                                  2334444444444332  233344 566777777776666655566666777777777


Q ss_pred             CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      +|++++++. .+..+++|+.|++++|+++.+++. +..+++|+.|++++|++++++...+..++
T Consensus       281 ~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L~  342 (390)
T 3o6n_A          281 NNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLK  342 (390)
T ss_dssp             SSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred             CCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhccCC
Confidence            777766654 234566777777777777666554 24556677777777777666655554444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.3e-32  Score=254.01  Aligned_cols=259  Identities=26%  Similarity=0.365  Sum_probs=228.1

Q ss_pred             EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002         94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR  173 (357)
Q Consensus        94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (357)
                      .++.+++.++.+|....  .+++.|++++|.++.+.+..|..+ ++|++|++++|.++.+.+..|.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            68889999999998654  378999999999999999999888 679999999999999998899999999999999999


Q ss_pred             cccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCc
Q psy15002        174 IALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDS  252 (357)
Q Consensus       174 l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  252 (357)
                      ++.++...+. +++|++|++++|++..+.+..|..+++|++|++++|.+..+.+..|.++++|+.|++++|+++.+++..
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            9999988764 499999999999999999889999999999999999999999999999999999999999999987777


Q ss_pred             cccccccccEEEccCCcCcccCcccccCCCCCcEEEc------------------------cCCcCceeCcCcCCCCCCC
Q psy15002        253 FKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL------------------------LHNRIALIEEGDFEGLHNL  308 (357)
Q Consensus       253 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------~~n~l~~~~~~~~~~~~~L  308 (357)
                      +..+ ++|+.|++++|.+..+++..+..+++|++|++                        ++|.++.++...+.++++|
T Consensus       172 l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          172 LSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HTTC-TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             hccc-CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            8887 89999999999999888766766665555555                        4556666665567778889


Q ss_pred             CEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      +.|++++|+++++++..+..+++|+.|+|++|.++++.+..|.++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL  298 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence            999999999988888888888899999999999999988888877654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-31  Score=249.91  Aligned_cols=256  Identities=26%  Similarity=0.371  Sum_probs=199.7

Q ss_pred             ceEEEEEecCCCCc-CccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCcee--ChhhhcCCCCCc
Q psy15002         90 LIIFYLKLRHNNLP-KLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV--PQTSLSKLENLR  165 (357)
Q Consensus        90 ~~l~~L~l~~~~i~-~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~--~~~~~~~l~~L~  165 (357)
                      ..+++|++++|.+. .++...|... +|++|++++|.++.+.+..+..+ ++|++|++++|.+++.  ....+.++++|+
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC-TTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc-ccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            45677777777775 5666666555 77777777777777776666666 5577777777777652  223366677777


Q ss_pred             EEeccCCccccccCC--CCCCCCCCeEECCCCCCeeeCccccCCC-----------------------------------
Q psy15002        166 KLELLHNRIALIEEG--DFEGKALTQLDLSQNSLAVVPSPALKSL-----------------------------------  208 (357)
Q Consensus       166 ~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l-----------------------------------  208 (357)
                      +|++++|.++.+.+.  +..+++|++|++++|++..+.+..+..+                                   
T Consensus       133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  212 (455)
T 3v47_A          133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT  212 (455)
T ss_dssp             EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred             EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence            777777777665433  2344667777777666655443322211                                   


Q ss_pred             --------------------------------------------------------------CcCceeecccccCcccCc
Q psy15002        209 --------------------------------------------------------------NHLLILNLNHNKISALHS  226 (357)
Q Consensus       209 --------------------------------------------------------------~~L~~L~l~~n~l~~~~~  226 (357)
                                                                                    ++|+.|++++|.+..+.+
T Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  292 (455)
T 3v47_A          213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK  292 (455)
T ss_dssp             EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred             eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence                                                                          356666666666666667


Q ss_pred             ccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCC
Q psy15002        227 NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH  306 (357)
Q Consensus       227 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  306 (357)
                      ..+..+++|+.|++++|+++++.+..|..+ ++|+.|++++|.++++++..+..+++|++|++++|+++++++..+.+++
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            788899999999999999999988889888 8999999999999999888899999999999999999999888999999


Q ss_pred             CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      +|+.|++++|+++++++..+..+++|+.|++++|++++..+
T Consensus       372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999999999888999999999999999998765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.6e-32  Score=271.12  Aligned_cols=289  Identities=24%  Similarity=0.327  Sum_probs=234.4

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCC-CcceecCcc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS-SLAVVEESS  132 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~-~l~~~~~~~  132 (357)
                      +|.|..    ..++|...+++.+|. .       +..+++|++++|.++.+++..|... +|++|++++| .+..+.+.+
T Consensus         1 ~C~~~~----~~~dcs~~~L~~vP~-l-------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~   68 (844)
T 3j0a_A            1 SCSFDG----RIAFYRFCNLTQVPQ-V-------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA   68 (844)
T ss_dssp             CCBTTT----EEEEESCCCSSCCCS-S-------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT
T ss_pred             CceEec----eEEEccCCCCCCCCC-C-------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH
Confidence            377764    389999999999885 2       5789999999999999988888777 9999999999 566777888


Q ss_pred             cccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccc-ccCC--CCCCCCCCeEECCCCCCeeeCc-cccCCC
Q psy15002        133 LSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEG--DFEGKALTQLDLSQNSLAVVPS-PALKSL  208 (357)
Q Consensus       133 ~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~~~l  208 (357)
                      |..+ ++|++|++++|.+..+.+..|.++++|++|++++|.++. ++..  +..+++|++|++++|.+..+.+ ..|.++
T Consensus        69 f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L  147 (844)
T 3j0a_A           69 FRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL  147 (844)
T ss_dssp             TSSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred             hcCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence            8888 679999999999999988899999999999999999986 4443  4556999999999999988765 578999


Q ss_pred             CcCceeecccccCcccCcccCCCC--C------------------------------CCCEEEccCCcCcccCCCccc--
Q psy15002        209 NHLLILNLNHNKISALHSNAFQGL--D------------------------------TLEILTIFENKLSLIEPDSFK--  254 (357)
Q Consensus       209 ~~L~~L~l~~n~l~~~~~~~l~~l--~------------------------------~L~~L~L~~n~l~~~~~~~~~--  254 (357)
                      ++|++|++++|.+..+.+..+..+  +                              .|+.|++++|+++...+..+.  
T Consensus       148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence            999999999998876544433222  2                              266777776654432221111  


Q ss_pred             ----------------------------------cc-cccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc
Q psy15002        255 ----------------------------------GL-EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE  299 (357)
Q Consensus       255 ----------------------------------~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  299 (357)
                                                        ++ .++++.|++++|.+..+++..+..+++|+.|++++|+++.+++
T Consensus       228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred             cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence                                              11 1468888888888888887788888999999999999999888


Q ss_pred             CcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        300 GDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       300 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      ..|.++++|+.|++++|+++++.+..+..+++|+.|++++|.+.++++..|.++++|
T Consensus       308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  364 (844)
T 3j0a_A          308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL  364 (844)
T ss_dssp             TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred             HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence            888888999999999999988888888888999999999999999888888877654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.98  E-value=3.5e-31  Score=247.16  Aligned_cols=216  Identities=32%  Similarity=0.485  Sum_probs=202.1

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNL  216 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  216 (357)
                      ++++.|++++|.++.+++..|.++++|++|++++|.++.+++..+.. ++|++|++++|+++.+++..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            57999999999999999999999999999999999999998776654 99999999999999999989999999999999


Q ss_pred             ccccCcccCcccCCCCCCCCEEEccC-CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc
Q psy15002        217 NHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA  295 (357)
Q Consensus       217 ~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  295 (357)
                      ++|.+..+++..|..+++|+.|++++ +.+..++...|..+ ++|+.|++++|.++.++.  +..+++|++|++++|.++
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-SSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-cccCeecCCCCcCccccc--cCCCcccCEEECCCCccC
Confidence            99999999998999999999999998 56777877788888 899999999999998873  788999999999999999


Q ss_pred             eeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       296 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      .+++..|.++++|+.|++++|+++.+++..|.++++|+.|+|++|++++++++.|..+++|
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            9999999999999999999999999999999999999999999999999999998887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2e-31  Score=258.03  Aligned_cols=259  Identities=20%  Similarity=0.306  Sum_probs=185.4

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..++.++++++.+..+|...|... +|+.|++++|.++.+++..|..+ ++|++|++++|.++.+++..|+++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            556788888888888888777655 78888888888888887777777 5688888888888888888788888888888


Q ss_pred             ccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCC---------------
Q psy15002        169 LLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGL---------------  232 (357)
Q Consensus       169 l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l---------------  232 (357)
                      +++|.++.+|+.++ .+++|++|++++|.+..+++..+..+++|++|++++|.+..++...+..+               
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            88888888888765 44888888888888888887778888888888888888776644333221               


Q ss_pred             ----------------------CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002        233 ----------------------DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  290 (357)
Q Consensus       233 ----------------------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  290 (357)
                                            ++|+.|++++|.+++.  ..+..+ ++|+.|++++|.++++.+..+..+++|+.|+++
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence                                  1234444444444332  234444 567777777777777666667777777777777


Q ss_pred             CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      +|.+++++. .+..+++|+.|+|++|.++.+|... ..+++|+.|+|++|.+++++...+..++
T Consensus       287 ~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~L~  348 (597)
T 3oja_B          287 NNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHTLK  348 (597)
T ss_dssp             TSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred             CCCCCCCCc-ccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence            777777654 3455677777777777777666543 5566777777777777776655555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1.2e-31  Score=238.95  Aligned_cols=269  Identities=18%  Similarity=0.205  Sum_probs=228.6

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcC---ccccccCCCcccEEEecC-CCcceecC
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPK---LTGFIFFGLDIRHLTIHN-SSLAVVEE  130 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~---l~~~~~~~~~L~~L~l~~-~~l~~~~~  130 (357)
                      +|.|.+.    .|.|.....              ...++.|+++++.++.   +|.......+|++|++++ |.+....+
T Consensus        33 ~C~~~w~----gv~C~~~~~--------------~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p   94 (313)
T 1ogq_A           33 CCNRTWL----GVLCDTDTQ--------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP   94 (313)
T ss_dssp             TTTTCST----TEEECCSSS--------------CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC
T ss_pred             CCcCCCc----ceEeCCCCC--------------CceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC
Confidence            5766554    677864321              2578999999999984   666555555999999995 88987777


Q ss_pred             cccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccc-cccCCCCCCCCCCeEECCCCCCeeeCccccCCCC
Q psy15002        131 SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLN  209 (357)
Q Consensus       131 ~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  209 (357)
                      ..+..+ ++|++|++++|.+++..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..++
T Consensus        95 ~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A           95 PAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             GGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             hhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh
Confidence            788877 67999999999999777778999999999999999998 6777777789999999999999966666888887


Q ss_pred             -cCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEE
Q psy15002        210 -HLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  288 (357)
Q Consensus       210 -~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  288 (357)
                       +|++|++++|++....+..+..++ |+.|++++|++++..+..+..+ ++|+.|++++|.++...+. +..+++|++|+
T Consensus       174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~  250 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLD  250 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred             hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcC-CCCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence             999999999999977788888877 9999999999998888888888 8999999999999876654 77889999999


Q ss_pred             ccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCc-ccccC
Q psy15002        289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH-IHTVD  346 (357)
Q Consensus       289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~-l~~~~  346 (357)
                      +++|.+++..+..+..+++|+.|++++|++++..+.. .++++|+.+++++|+ +.+.+
T Consensus       251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            9999999877778889999999999999999655544 788999999999997 66544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.98  E-value=1.5e-31  Score=257.64  Aligned_cols=163  Identities=24%  Similarity=0.367  Sum_probs=138.2

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCccc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSL  133 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~  133 (357)
                      +|.|...  ...+.|...+++++|..+       +..+++|++++|.++.++...|... +|++|++++|.++.+++.+|
T Consensus         2 ~c~~~~~--~~~~~c~~~~l~~ip~~l-------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~   72 (570)
T 2z63_A            2 PCVEVVP--NITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY   72 (570)
T ss_dssp             CSEEEET--TTEEECCSSCCSSCCSSS-------CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTT
T ss_pred             CccccCC--CcEEEeCCCCccccCCCc-------cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccc
Confidence            5888765  348999999998888533       4678999999999999998888776 89999999999999998888


Q ss_pred             ccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCC-CCCCCCCCeEECCCCCCeeeC-ccccCCCCcC
Q psy15002        134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-DFEGKALTQLDLSQNSLAVVP-SPALKSLNHL  211 (357)
Q Consensus       134 ~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L  211 (357)
                      ..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.++.. +..+++|++|++++|.+..+. +..+.++++|
T Consensus        73 ~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  151 (570)
T 2z63_A           73 QSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  151 (570)
T ss_dssp             TTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             cCc-hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence            888 6799999999999999988899999999999999999988874 445589999999999998754 5678888999


Q ss_pred             ceeecccccCcccCcc
Q psy15002        212 LILNLNHNKISALHSN  227 (357)
Q Consensus       212 ~~L~l~~n~l~~~~~~  227 (357)
                      ++|++++|.+..+.+.
T Consensus       152 ~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A          152 EHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CEEECTTSCCCEECGG
T ss_pred             CEEeCcCCccceecHH
Confidence            9999988877665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.98  E-value=9.5e-31  Score=245.04  Aligned_cols=216  Identities=33%  Similarity=0.451  Sum_probs=202.2

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL  216 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  216 (357)
                      +++++|++++|.++.+.+..|.++++|++|++++|.++.+++..+. +++|++|++++|+++.+++..|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            5799999999999999999999999999999999999999877665 499999999999999999988999999999999


Q ss_pred             ccccCcccCcccCCCCCCCCEEEccC-CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc
Q psy15002        217 NHNKISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA  295 (357)
Q Consensus       217 ~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  295 (357)
                      ++|.+..+++..|..+++|+.|++++ +.+..++...|..+ ++|+.|++++|.++.++  .+..+++|++|++++|.++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-TTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC-CCCCEEECCCCcccccc--cccccccccEEECcCCcCc
Confidence            99999999998999999999999998 67788877788888 89999999999999986  3788999999999999999


Q ss_pred             eeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       296 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      ++++..|.++++|+.|++++|+++++++..+.++++|+.|+|++|.+++++++.|..+++|
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            9999999999999999999999999999999999999999999999999999998887765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.1e-30  Score=253.46  Aligned_cols=262  Identities=25%  Similarity=0.363  Sum_probs=140.6

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..++.|++++|.++.++...|... +|++|++++|.++.++.. +..+ ++|++|++++|.++.+++..+.++++|++|+
T Consensus       254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGL-STLKKLVLSANKFENLCQISASNFPSLTHLS  331 (606)
T ss_dssp             SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred             CceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hccc-ccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence            366777777777777777666555 677777777776655432 3444 4577777777766666555566666666666


Q ss_pred             ccCCccc-cccCCC-CCCCCCCeEECCCCCCeeeC--ccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCc
Q psy15002        169 LLHNRIA-LIEEGD-FEGKALTQLDLSQNSLAVVP--SPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK  244 (357)
Q Consensus       169 l~~n~l~-~~~~~~-~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  244 (357)
                      +++|.+. .++... ...++|++|++++|.+..+.  +..+..+++|++|++++|.+..+.+..+..+++|+.|++++|+
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            6666554 444442 23355666666666555544  3445555555555555555555555555555555555555555


Q ss_pred             CcccCCC-ccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee---CcCcCCCCCCCCEeecCCCcCcc
Q psy15002        245 LSLIEPD-SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI---EEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       245 l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      ++...+. .+..+ ++|+.|++++|.++..++..+..+++|++|++++|.+++.   .+..+..+++|+.|++++|++++
T Consensus       412 l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          412 LKVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             EECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             CCCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            5443322 23333 4555555555555544444444445555555555544431   11233444444445554444444


Q ss_pred             cCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       321 ~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      +++..+.++++|+.|++++|++++++++.|.+++
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            4444444444444444444444444444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=7.2e-30  Score=251.02  Aligned_cols=261  Identities=28%  Similarity=0.387  Sum_probs=220.9

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCC--cceecCccccccc-ccceEEEccCCcCceeChhhhcCCCCCc
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS--LAVVEESSLSSIG-KKLKRLNLGGNELTRVPQTSLSKLENLR  165 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~--l~~~~~~~~~~l~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~  165 (357)
                      ..+++|++++|.++.+++..|... +|++|++++|.  +..++...+..+. .+|++|++++|.++.+.+..|.++++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            567888999999988888877766 88999998886  4555555555442 4699999999999999888899999999


Q ss_pred             EEeccCCccc-cccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCc--ccCcccCCCCCCCCEEEcc
Q psy15002        166 KLELLHNRIA-LIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIF  241 (357)
Q Consensus       166 ~L~l~~n~l~-~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~  241 (357)
                      +|++++|.++ .++...+ ..++|++|++++|++..+.+..|..+++|+.|++++|.+.  ...+..+..+++|+.|+++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            9999999997 4664444 4489999999999999998888999999999999999876  3456778889999999999


Q ss_pred             CCcCcccCCCccccccccccEEEccCCcCcccCc--------ccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeec
Q psy15002        242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ--------TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL  313 (357)
Q Consensus       242 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  313 (357)
                      +|+++.+++..|..+ ++|+.|++++|.++.++.        ..+..+++|++|++++|+++.+++..|.++++|+.|++
T Consensus       489 ~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L  567 (680)
T 1ziw_A          489 NNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL  567 (680)
T ss_dssp             SSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence            999999888888887 789999999999987643        23678899999999999999999888999999999999


Q ss_pred             CCCcCcccCcccCCCCCCCcEEeCCCCcccccCccccc
Q psy15002        314 AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       314 ~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                      ++|+++++++..|..+++|+.|++++|.++++++..|.
T Consensus       568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            99999999998888999999999999999999888664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=7e-31  Score=251.94  Aligned_cols=171  Identities=16%  Similarity=0.212  Sum_probs=141.0

Q ss_pred             cccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccC
Q psy15002         69 CEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGG  147 (357)
Q Consensus        69 C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~  147 (357)
                      |...+++++|..+       +..+++|++++|.++.+++..|... +|++|++++|.++.+.+.+|..+ ++|++|++++
T Consensus        12 ~~~~~l~~ip~~~-------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~   83 (549)
T 2z81_A           12 GRSRSFTSIPSGL-------TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSD   83 (549)
T ss_dssp             CTTSCCSSCCSCC-------CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTT
T ss_pred             CCCCccccccccC-------CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCC
Confidence            5555666666432       4678999999999999988777776 89999999999999999999888 6799999999


Q ss_pred             CcCceeChhhhcCCCCCcEEeccCCccccc--cCCCCCCCCCCeEECCCCC-CeeeCccccCCCCcCceeecccccCccc
Q psy15002        148 NELTRVPQTSLSKLENLRKLELLHNRIALI--EEGDFEGKALTQLDLSQNS-LAVVPSPALKSLNHLLILNLNHNKISAL  224 (357)
Q Consensus       148 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~  224 (357)
                      |.++++++..|+++++|++|++++|.++.+  +..+..+++|++|++++|. +..+++..+.++++|++|++++|.+...
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence            999999998899999999999999999854  5556667999999999998 6778777888899999999999988776


Q ss_pred             CcccCCC------------------------CCCCCEEEccCCcCcc
Q psy15002        225 HSNAFQG------------------------LDTLEILTIFENKLSL  247 (357)
Q Consensus       225 ~~~~l~~------------------------l~~L~~L~L~~n~l~~  247 (357)
                      .+..+..                        +++|+.|++++|++++
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            5555543                        4566666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.97  E-value=1.4e-29  Score=221.70  Aligned_cols=204  Identities=27%  Similarity=0.395  Sum_probs=113.7

Q ss_pred             ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      |++|++++|.++.+++..|.++++|++|++++|.++.+++..+. .++|++|++++|.++.+++..+.++++|++|++++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            45555555555555444445555555555555555544443322 24555555555555555555555555566666666


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccC-CCccccccccccEEEccCCcCcccCcccccCCCCCc----EEEccCCc
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIE-PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR----KLELLHNR  293 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n~  293 (357)
                      |.+..+.+..+..+++|++|++++|+++.+. +..+..+ ++|+.|++++|.++.+++..+..+++|+    +|++++|.
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCccccCchhcccCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            5555555545555566666666666655543 4445554 5566666666666655554444444444    56666666


Q ss_pred             CceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       294 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      ++.+++..+.. .+|+.|++++|+++++++..+..+++|+.|++++|+++..
T Consensus       189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            66666554442 3566666666666666666666666666666666666543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.3e-30  Score=254.86  Aligned_cols=90  Identities=23%  Similarity=0.302  Sum_probs=48.5

Q ss_pred             cccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCC
Q psy15002        259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD  338 (357)
Q Consensus       259 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  338 (357)
                      +++.|++++|.+++..+..++.++.|+.|++++|++++..+..++++++|+.|||++|++++..|..+..++.|++||++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            44555555555554444445555555555555555555444455555555555555555554444445555555555555


Q ss_pred             CCcccccCcc
Q psy15002        339 GNHIHTVDPA  348 (357)
Q Consensus       339 ~N~l~~~~~~  348 (357)
                      +|+++|..|+
T Consensus       713 ~N~l~g~iP~  722 (768)
T 3rgz_A          713 NNNLSGPIPE  722 (768)
T ss_dssp             SSEEEEECCS
T ss_pred             CCcccccCCC
Confidence            5555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=3.3e-30  Score=229.64  Aligned_cols=239  Identities=25%  Similarity=0.322  Sum_probs=211.8

Q ss_pred             CcccEEEecCCCcce--ecCcccccccccceEEEccC-CcCceeChhhhcCCCCCcEEeccCCccc-cccCCCCCCCCCC
Q psy15002        113 LDIRHLTIHNSSLAV--VEESSLSSIGKKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALT  188 (357)
Q Consensus       113 ~~L~~L~l~~~~l~~--~~~~~~~~l~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~  188 (357)
                      .++++|+++++.+..  ..+..+..+ ++|++|++++ |.+.+..+..|.++++|++|++++|.++ .+|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            479999999999987  666778877 6799999995 9998777778999999999999999998 6777777789999


Q ss_pred             eEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCC-CCCEEEccCCcCcccCCCccccccccccEEEccC
Q psy15002        189 QLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLD-TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG  267 (357)
Q Consensus       189 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  267 (357)
                      +|++++|.++...+..+..+++|++|++++|+++...+..+..++ +|+.|++++|++++..+..+..+ . |+.|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c-ccEEECcC
Confidence            999999999977777899999999999999999976677888887 99999999999998878888886 4 99999999


Q ss_pred             CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      |.+++..+..+..+++|+.|++++|.++...+. +..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999988888899999999999999999977664 7778999999999999997777778899999999999999998777


Q ss_pred             ccccCcccc
Q psy15002        348 AAFSGLEAK  356 (357)
Q Consensus       348 ~~~~~l~~l  356 (357)
                      .. ..+++|
T Consensus       286 ~~-~~l~~L  293 (313)
T 1ogq_A          286 QG-GNLQRF  293 (313)
T ss_dssp             CS-TTGGGS
T ss_pred             CC-cccccc
Confidence            75 555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-29  Score=233.38  Aligned_cols=248  Identities=23%  Similarity=0.331  Sum_probs=209.0

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..+++|++++|.++.++...|... +|++|++++|.++.+++..+..+ ++|++|++++|.++.++...|.++++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            568899999999999998878776 89999999999999988888887 6799999999999999988889999999999


Q ss_pred             ccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCC-------------------------------------Cc
Q psy15002        169 LLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSL-------------------------------------NH  210 (357)
Q Consensus       169 l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------~~  210 (357)
                      +++|.++.+++..+. .++|++|++++|+++.++...+..+                                     ++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  227 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence            999999988776554 4899999999998877654333222                                     24


Q ss_pred             CceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002        211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  290 (357)
Q Consensus       211 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  290 (357)
                      |+.|++++|.++..  ..+..+++|+.|++++|.++++.+..+..+ ++|+.|++++|.++.++. .+..+++|++|+++
T Consensus       228 L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          228 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVALNL-YGQPIPTLKVLDLS  303 (390)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECCSSCCCEEEC-SSSCCTTCCEEECC
T ss_pred             ccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc-ccCCEEECCCCcCcccCc-ccCCCCCCCEEECC
Confidence            55566666666554  357788999999999999999988888888 899999999999999874 45788999999999


Q ss_pred             CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccC
Q psy15002        291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                      +|+++.++.. +..+++|+.|++++|+++.++   +..+++|+.|++++|+++...
T Consensus       304 ~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          304 HNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             SSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence            9999988763 566899999999999999987   577899999999999997643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.2e-30  Score=233.01  Aligned_cols=258  Identities=19%  Similarity=0.265  Sum_probs=226.5

Q ss_pred             EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002         94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR  173 (357)
Q Consensus        94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (357)
                      ..+.+++.++.+|...+.  ++++|++++|.++.++...+..+ ++|++|++++|.++.+++..|.++++|++|++++|.
T Consensus        35 ~c~~~~~~l~~iP~~~~~--~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCSSCCTTCCT--TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCcccccccccc--cCcEEECCCCcCcccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            378899999999987664  79999999999999998888888 679999999999999998889999999999999999


Q ss_pred             cccccCCC-CCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccc-cCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002        174 IALIEEGD-FEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHN-KISALHSNAFQGLDTLEILTIFENKLSLIEP  250 (357)
Q Consensus       174 l~~~~~~~-~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (357)
                      ++.+++.. ...++|++|++++|+++.++. ..+..+++|++|++++| .+..+.+..+..+++|+.|++++|+++.+.+
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            99998874 456999999999999999887 68899999999999999 5888888889999999999999999999988


Q ss_pred             CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC---CCCCCCEeecCCCcCcc-----cC
Q psy15002        251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE---GLHNLDSLVLAHNQLRT-----IP  322 (357)
Q Consensus       251 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~-----~~  322 (357)
                      ..+..+ ++|+.|++++|.++.++...+..+++|++|++++|.+++++...+.   ....++.++++++.+.+     ++
T Consensus       192 ~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          192 KSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             TTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             HHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence            888888 8999999999999988876666789999999999999987654442   35678899999998875     33


Q ss_pred             cccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        323 PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       323 ~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                       ..+.++++|+.|++++|.++++++..|.++++|
T Consensus       271 -~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  303 (353)
T 2z80_A          271 -KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL  303 (353)
T ss_dssp             -HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             -HHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence             345788999999999999999998888877654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=7.2e-30  Score=253.87  Aligned_cols=261  Identities=25%  Similarity=0.257  Sum_probs=138.1

Q ss_pred             eEEEEEecCCCCc-CccccccCC-CcccEEEecCCCcceecCcccccccccceEEEccCCcCc-eeChhhhcCCCCCcEE
Q psy15002         91 IIFYLKLRHNNLP-KLTGFIFFG-LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT-RVPQTSLSKLENLRKL  167 (357)
Q Consensus        91 ~l~~L~l~~~~i~-~l~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L  167 (357)
                      .+++|++++|.+. .+|...+.. .+|++|++++|.++...+..+..+ ++|++|++++|.+. .++...+.++++|++|
T Consensus       270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L  348 (768)
T 3rgz_A          270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVL  348 (768)
T ss_dssp             TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred             CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence            4455555555555 555555554 477788888877777766667666 56888888888877 5665557778888888


Q ss_pred             eccCCccc-cccCCCCCCC-CCCeEECCCCCCeeeCccccCC--CCcCceeecccccCcccCcccCCCCCCCCEEEccCC
Q psy15002        168 ELLHNRIA-LIEEGDFEGK-ALTQLDLSQNSLAVVPSPALKS--LNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN  243 (357)
Q Consensus       168 ~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  243 (357)
                      ++++|.++ .+|..+...+ +|++|++++|.+....+..+..  +++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus       349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred             eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence            88888776 4554444333 5555555555544332222222  344444555444444444444444444555555555


Q ss_pred             cCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002        244 KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       244 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                      ++++..+..+..+ ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+.++++|+.|++++|++++..+
T Consensus       429 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          429 YLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             EEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence            4444444444444 444444444444443333334444444444444444444333344444444444444444443333


Q ss_pred             ccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002        324 RVFAHLPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       324 ~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      ..+..+++|+.|++++|++++..|..|+++
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            333444444444444444444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-30  Score=231.39  Aligned_cols=248  Identities=21%  Similarity=0.268  Sum_probs=175.4

Q ss_pred             EEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  170 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  170 (357)
                      +...+++.+++...+...+... +|++|++++|.++.+.+..+..+ ++|++|++++|.++++++  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            4445555566655555555544 67777777777777666666666 568888888887776654  7777788888888


Q ss_pred             CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002        171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP  250 (357)
Q Consensus       171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (357)
                      +|.++.++..    ++|++|++++|.++.++...   +++|++|++++|+++.+.+..+..+++|+.|++++|.++.+.+
T Consensus        89 ~n~l~~l~~~----~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           89 NNYVQELLVG----PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SSEEEEEEEC----TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCccccccCC----CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            8877776633    67788888888877776533   5667888888888877777677777788888888888777666


Q ss_pred             Cccc-cccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002        251 DSFK-GLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHL  329 (357)
Q Consensus       251 ~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  329 (357)
                      ..+. .+ ++|+.|++++|.++.++.  ...+++|++|++++|.++++++. +..+++|+.|++++|+++.+|.. +..+
T Consensus       162 ~~~~~~l-~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l  236 (317)
T 3o53_A          162 AELAASS-DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFS  236 (317)
T ss_dssp             GGGGGGT-TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCC
T ss_pred             HHHhhcc-CcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcC
Confidence            5554 34 678888888888777753  33467788888888888877664 66677888888888888877654 4667


Q ss_pred             CCCcEEeCCCCccc-ccCcccccCcc
Q psy15002        330 PLLNSLELDGNHIH-TVDPAAFSGLE  354 (357)
Q Consensus       330 ~~L~~L~L~~N~l~-~~~~~~~~~l~  354 (357)
                      ++|+.|++++|++. +..+..+..++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccc
Confidence            78888888888877 55555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.4e-31  Score=237.08  Aligned_cols=246  Identities=21%  Similarity=0.177  Sum_probs=197.1

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccc--------cccccceEEEccCCcCceeChhhh--c
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLS--------SIGKKLKRLNLGGNELTRVPQTSL--S  159 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--------~l~~~L~~L~ls~n~l~~~~~~~~--~  159 (357)
                      ..++++++++|.+ .+|...+..  ++.|++++|.+.........        .+ ++|++|++++|.+++..+..+  .
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHHHh
Confidence            3455667788888 777655543  88889998888654332222        23 679999999999996544444  8


Q ss_pred             CCCCCcEEeccCCccccccCCCCCC-----CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC--ccc--CC
Q psy15002        160 KLENLRKLELLHNRIALIEEGDFEG-----KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH--SNA--FQ  230 (357)
Q Consensus       160 ~l~~L~~L~l~~n~l~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~--l~  230 (357)
                      ++++|++|++++|.++.+|..+...     ++|++|++++|++..+++..+..+++|++|++++|++.+..  +..  +.
T Consensus       119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            9999999999999999886544444     89999999999999999889999999999999999975431  222  37


Q ss_pred             CCCCCCEEEccCCcCcccC---CCccccccccccEEEccCCcCcccCc-ccccCCCCCcEEEccCCcCceeCcCcCCCCC
Q psy15002        231 GLDTLEILTIFENKLSLIE---PDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIALIEEGDFEGLH  306 (357)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  306 (357)
                      .+++|++|++++|+++.++   ...+..+ ++|+.|++++|.+++..+ ..+..+++|++|++++|.++.++...+   +
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~  274 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A  274 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---S
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---C
Confidence            8899999999999998542   2333444 799999999999998663 456678999999999999998877443   8


Q ss_pred             CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      +|+.|++++|+++++|.  +..+++|+.|++++|++++.
T Consensus       275 ~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             CceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence            99999999999999965  78999999999999999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.8e-29  Score=222.20  Aligned_cols=249  Identities=22%  Similarity=0.337  Sum_probs=225.8

Q ss_pred             EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeC--hhhhcCCCCCcEEecc
Q psy15002         93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP--QTSLSKLENLRKLELL  170 (357)
Q Consensus        93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~  170 (357)
                      +.++.+++.++.+|...+  .++++|++++|.++.++...+..+ ++|++|++++|.++.+.  +..+.++++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            378999999999998665  478999999999999998888887 67999999999998663  4557789999999999


Q ss_pred             CCccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc-c
Q psy15002        171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL-I  248 (357)
Q Consensus       171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~  248 (357)
                      +|.++.++..+...++|++|++++|.++.++. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++ .
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            99999999888888999999999999999876 678999999999999999999888889999999999999999986 4


Q ss_pred             CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002        249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH  328 (357)
Q Consensus       249 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  328 (357)
                      .+..+..+ ++|+.|++++|.++++++..+..+++|++|++++|.++++++..+..+++|+.|++++|++++.++..+..
T Consensus       167 ~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          167 LPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             ECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             chhHHhhC-cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            56777777 89999999999999998888999999999999999999999888999999999999999999998888888


Q ss_pred             CC-CCcEEeCCCCccccc
Q psy15002        329 LP-LLNSLELDGNHIHTV  345 (357)
Q Consensus       329 ~~-~L~~L~L~~N~l~~~  345 (357)
                      ++ +|+.|++++|++++.
T Consensus       246 ~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCTTCCEEECTTCCEECS
T ss_pred             hhccCCEEEccCCCeecc
Confidence            84 999999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=9.6e-30  Score=242.47  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=94.2

Q ss_pred             eEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEE
Q psy15002         65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRL  143 (357)
Q Consensus        65 ~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L  143 (357)
                      ..++|+..+++.+|..+       +..+++|++++|.++.+++..|... +|++|++++|.++.+.+..|..+ ++|++|
T Consensus         3 ~~l~ls~n~l~~ip~~~-------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL-------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSCCCSC-------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEE
T ss_pred             ceEecCCCCcccccccc-------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEE
Confidence            36778777777666322       3677888888888888887666665 88888888888888877778777 568888


Q ss_pred             EccCCcCceeChhhhcCCCCCcEEeccCCccccc--cCCCCCCCCCCeEECCCCCCee
Q psy15002        144 NLGGNELTRVPQTSLSKLENLRKLELLHNRIALI--EEGDFEGKALTQLDLSQNSLAV  199 (357)
Q Consensus       144 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l~~  199 (357)
                      ++++|.++.++..   .+++|++|++++|.++.+  |..+..+++|++|++++|.+..
T Consensus        75 ~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           75 DLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             ECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             ecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            8888888887764   788888888888888753  4556666788888887776643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=7.9e-29  Score=238.30  Aligned_cols=145  Identities=21%  Similarity=0.271  Sum_probs=125.3

Q ss_pred             EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCC
Q psy15002         93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN  172 (357)
Q Consensus        93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  172 (357)
                      +++++++++++.+|...+  .++++|++++|.++.+++..+..+ ++|++|++++|.++.++++.|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            689999999999998765  589999999999999998899888 67999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCeEECCCCCCeeeC-ccccCCCCcCceeecccccCcccCcccCCCCCCC--CEEEccCCcC
Q psy15002        173 RIALIEEGDFEGKALTQLDLSQNSLAVVP-SPALKSLNHLLILNLNHNKISALHSNAFQGLDTL--EILTIFENKL  245 (357)
Q Consensus       173 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l  245 (357)
                      .++.+|..  .+++|++|++++|+++.++ +..|.++++|++|++++|.+....   +..+++|  +.|++++|.+
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccc
Confidence            99999987  6799999999999999976 368999999999999999886533   2333333  6666665555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.96  E-value=5.8e-29  Score=213.09  Aligned_cols=195  Identities=21%  Similarity=0.345  Sum_probs=139.0

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-cccccCCCCC-CCCCCeEECCC-CCCeeeCccccCCCCcCceee
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFE-GKALTQLDLSQ-NSLAVVPSPALKSLNHLLILN  215 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  215 (357)
                      +|++|++++|.++.+++..|.++++|++|++++|. ++.+++..|. .++|++|++++ |+++.+++..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            35555555555555555555555566666666554 5555554432 25566666665 666666666677777788888


Q ss_pred             cccccCcccCcccCCCCCCCC---EEEccCC-cCcccCCCcccccccccc-EEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002        216 LNHNKISALHSNAFQGLDTLE---ILTIFEN-KLSLIEPDSFKGLEKKLK-RLNLGGNELTRVPQTSLSKLENLRKLELL  290 (357)
Q Consensus       216 l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  290 (357)
                      +++|.++.++.  +..+++|+   .|++++| +++.+++..|..+ ++|+ .|++++|.++.++...+.. ++|++|+++
T Consensus       112 l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          112 IFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             CCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            88887777643  66777777   8888888 8888877777777 6888 8888888888877766655 788888888


Q ss_pred             CCc-CceeCcCcCCCC-CCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCC
Q psy15002        291 HNR-IALIEEGDFEGL-HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN  340 (357)
Q Consensus       291 ~n~-l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N  340 (357)
                      +|+ ++.+++..|.++ ++|+.|++++|+++++|+.   .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            884 888888788888 8888888888888888874   5677888888776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=7.3e-29  Score=240.02  Aligned_cols=247  Identities=23%  Similarity=0.332  Sum_probs=209.5

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..+++|++++|.++.+++..|... +|++|++++|.++.+++..|..+ ++|++|++++|.++.+++..|.++++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            568899999999999998877776 89999999999999998888888 6799999999999999988889999999999


Q ss_pred             ccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCC-------------------------------------Cc
Q psy15002        169 LLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSL-------------------------------------NH  210 (357)
Q Consensus       169 l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------~~  210 (357)
                      +++|.++.+++..+ .+++|++|++++|.++.++...+..+                                     ++
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            99999998877654 45899999999998887654333222                                     23


Q ss_pred             CceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEcc
Q psy15002        211 LLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  290 (357)
Q Consensus       211 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  290 (357)
                      |+.|++++|.++..  ..+..+++|+.|++++|.++++.+..|..+ ++|+.|++++|.+++++. .+..+++|+.|+++
T Consensus       234 L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          234 LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERLYISNNRLVALNL-YGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC-SSCCEEECTTSCCCEEEC-SSSCCTTCCEEECC
T ss_pred             CCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCc-cCCCEEECCCCCCCCCCc-ccccCCCCcEEECC
Confidence            55555555555543  457788999999999999999988889888 899999999999999864 46778999999999


Q ss_pred             CCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        291 HNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      +|.++.++. .+..+++|+.|++++|.+++++   +..+++|+.|++++|+|.+.
T Consensus       310 ~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          310 HNHLLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            999998876 4567899999999999999887   47788999999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=237.22  Aligned_cols=127  Identities=25%  Similarity=0.358  Sum_probs=86.4

Q ss_pred             CCCCCCCCEEEccCCcCcccCC-CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCc-eeCcCcCCCCC
Q psy15002        229 FQGLDTLEILTIFENKLSLIEP-DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGLH  306 (357)
Q Consensus       229 l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~  306 (357)
                      +..+++|+.|++++|.+....+ ..+..+ ++|+.|++++|.+....+..+..+++|++|++++|.++ ...+..+..++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence            3344455555555555544433 344444 56777777777777666666777777777777777776 23335677778


Q ss_pred             CCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        307 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      +|+.|++++|+++++++..+..+++|+.|++++|+++++++..|.+++.|
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  520 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL  520 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence            88888888888888777777778888888888888888887777766654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=9.3e-29  Score=240.74  Aligned_cols=274  Identities=20%  Similarity=0.238  Sum_probs=203.0

Q ss_pred             hHHHHHhhhcc-CCCceEEEEEecCCCCcCccc--cccCCCcccEEEecCCCcc-eecCcccccccccceEEEccCCcCc
Q psy15002         76 KIQHTMTTLKS-KSGLIIFYLKLRHNNLPKLTG--FIFFGLDIRHLTIHNSSLA-VVEESSLSSIGKKLKRLNLGGNELT  151 (357)
Q Consensus        76 ~i~~~~~~~~~-~~~~~l~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~~L~~L~ls~n~l~  151 (357)
                      .+|..+..+.. ..-..+++|++++|.++.+|.  ......+|++|++++|.++ .++  .+..+ ++|++|++++|.++
T Consensus       290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l-~~L~~L~L~~N~l~  366 (636)
T 4eco_A          290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSE-IKLASLNLAYNQIT  366 (636)
T ss_dssp             HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEE-EEESEEECCSSEEE
T ss_pred             cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCC-CCCCEEECCCCccc
Confidence            46766655411 111567899999999988887  4444448999999999988 554  66666 57999999999888


Q ss_pred             eeChhhhcCCCC-CcEEeccCCccccccCCCCCC--CCCCeEECCCCCCeeeCccccC-------CCCcCceeecccccC
Q psy15002        152 RVPQTSLSKLEN-LRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPALK-------SLNHLLILNLNHNKI  221 (357)
Q Consensus       152 ~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l  221 (357)
                      .++.. +.++++ |++|++++|.++.+|..+...  ++|++|++++|.+....+..+.       .+++|++|++++|.+
T Consensus       367 ~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l  445 (636)
T 4eco_A          367 EIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI  445 (636)
T ss_dssp             ECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred             cccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence            77654 788888 999999999998888766554  3788888888888876666666       667888888888888


Q ss_pred             cccCcccCCCCCCCCEEEccCCcCcccCCCcccccc------ccccEEEccCCcCcccCcccc-cCCCCCcEEEccCCcC
Q psy15002        222 SALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE------KKLKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRI  294 (357)
Q Consensus       222 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l  294 (357)
                      +.++...+..+++|+.|++++|+++.++...+....      ++|+.|++++|.++.++.... ..+++|++|++++|++
T Consensus       446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l  525 (636)
T 4eco_A          446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF  525 (636)
T ss_dssp             CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence            887776667788888888888888877666655431      178888888888887775432 3788888888888888


Q ss_pred             ceeCcCcCCCCCCCCEeecC------CCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        295 ALIEEGDFEGLHNLDSLVLA------HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~L~------~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      ++++. .+..+++|+.|+++      +|++.+..+..+.++++|+.|+|++|+++.++...+..++
T Consensus       526 ~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~  590 (636)
T 4eco_A          526 SKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNIS  590 (636)
T ss_dssp             SSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCC
T ss_pred             CCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCC
Confidence            88644 55667888888884      4566655555567788888888888888777665554444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=6.6e-29  Score=236.66  Aligned_cols=126  Identities=21%  Similarity=0.296  Sum_probs=114.4

Q ss_pred             EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCC
Q psy15002         93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN  172 (357)
Q Consensus        93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  172 (357)
                      ++|++++|.++.+|...+  .++++|++++|.++.+.+..+..+ ++|++|++++|.++++.+..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            589999999999998766  689999999999999988888887 67999999999999998889999999999999999


Q ss_pred             ccccccCCCCCCCCCCeEECCCCCCeeeC-ccccCCCCcCceeecccccCcc
Q psy15002        173 RIALIEEGDFEGKALTQLDLSQNSLAVVP-SPALKSLNHLLILNLNHNKISA  223 (357)
Q Consensus       173 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~  223 (357)
                      .++.+|..  ..++|++|++++|+++.++ +..+..+++|++|++++|.+..
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            99999987  6799999999999999864 4688899999999999988754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=249.53  Aligned_cols=258  Identities=24%  Similarity=0.329  Sum_probs=211.3

Q ss_pred             CceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002         89 GLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        89 ~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  167 (357)
                      +..++.|++++|.+..+++..|... +|+.|++++|.+..+.+..|.++ ++|++|++++|.++.+.+..|.++++|++|
T Consensus       265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence            4678999999999998888888776 89999999999999988888887 679999999999999888889999999999


Q ss_pred             eccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc-------------------
Q psy15002        168 ELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN-------------------  227 (357)
Q Consensus       168 ~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------  227 (357)
                      ++++|.++.+++..+. .++|++|++++|.++.++.     +++|+.|++++|++..++..                   
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence            9999999988887665 4899999999998876543     55566666666655544221                   


Q ss_pred             --cCCCCCCCCEEEccCCcCcccCCC-ccccccccccEEEccCCcCccc-----CcccccCCCCCcEEEccCCcCceeCc
Q psy15002        228 --AFQGLDTLEILTIFENKLSLIEPD-SFKGLEKKLKRLNLGGNELTRV-----PQTSLSKLENLRKLELLHNRIALIEE  299 (357)
Q Consensus       228 --~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~  299 (357)
                        .+..+++|+.|++++|+++...+. .+... ++|+.|++++|.++..     .+..+..+++|+.|++++|+++++++
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSEN-PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC-TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccC-CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence              134678889999999988876544 23333 7899999999988743     33457788999999999999999999


Q ss_pred             CcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCccc
Q psy15002        300 GDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEA  355 (357)
Q Consensus       300 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  355 (357)
                      ..|.++++|+.|+|++|+++++++..+.  ++|+.|+|++|.++++++..|.+++.
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~  551 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV  551 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence            8899999999999999999999987765  78999999999999999998887664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2e-28  Score=237.59  Aligned_cols=248  Identities=21%  Similarity=0.274  Sum_probs=195.3

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeC--hhhhcCCCCCcEE
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP--QTSLSKLENLRKL  167 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L  167 (357)
                      ..+++|++++|.+..+|..  ...+|++|++++|......  .+..+ ++|++|++++|.++.+.  +..+.++++|++|
T Consensus       307 ~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L  381 (606)
T 3vq2_A          307 FKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL  381 (606)
T ss_dssp             CCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred             ccCCEEEcccccCcccccC--CCCccceeeccCCcCccch--hhccC-CCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence            4566777777777666632  3346777777777433222  33344 56888888888888773  5568888889999


Q ss_pred             eccCCccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002        168 ELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS  246 (357)
Q Consensus       168 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  246 (357)
                      ++++|.++.++..+...++|++|++++|++..+.+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|+++
T Consensus       382 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  461 (606)
T 3vq2_A          382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK  461 (606)
T ss_dssp             ECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             ECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence            99988888888767777889999999988888766 67888888999999998888887888888888999999998887


Q ss_pred             c-cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002        247 L-IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV  325 (357)
Q Consensus       247 ~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  325 (357)
                      + ..+..+..+ ++|+.|++++|.++++++..+..+++|++|++++|+++++.+..+.++++|+.|++++|+++.+|.. 
T Consensus       462 ~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-  539 (606)
T 3vq2_A          462 DNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-  539 (606)
T ss_dssp             GGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-
T ss_pred             CcchHHhhccC-CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-
Confidence            6 356677777 7899999999988888877788888999999999988888777888888899999999998888876 


Q ss_pred             CCCCC-CCcEEeCCCCcccc
Q psy15002        326 FAHLP-LLNSLELDGNHIHT  344 (357)
Q Consensus       326 ~~~~~-~L~~L~L~~N~l~~  344 (357)
                      +..++ +|+.+++++|++..
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCC
T ss_pred             HhhhcccCcEEEccCCCccc
Confidence            56665 58899999988875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=3e-28  Score=220.26  Aligned_cols=242  Identities=24%  Similarity=0.362  Sum_probs=149.3

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..+++|++++|.++.++.  +... +|++|++++|.++.++  .+..+ ++|++|++++|.++.+++  +.++++|++|+
T Consensus        66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l-~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~  138 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLN  138 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTC-TTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCC-CcCCEEECcCCcccCchh--hccCCceeEEE
Confidence            456677777777776665  3333 6777777777666653  34444 457777777776666654  55666666666


Q ss_pred             ccCCccccccCCCCCCCCCCeEECCCCCCeeeCc--------------------cccCCCCcCceeecccccCcccCccc
Q psy15002        169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPS--------------------PALKSLNHLLILNLNHNKISALHSNA  228 (357)
Q Consensus       169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~  228 (357)
                      +++|......+.+...++|++|++++|.+..++.                    ..+..+++|+.+++++|.+..+.+  
T Consensus       139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--  216 (347)
T 4fmz_A          139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--  216 (347)
T ss_dssp             CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--
Confidence            6666333222223333455555555554444432                    013444445555555554444422  


Q ss_pred             CCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCC
Q psy15002        229 FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL  308 (357)
Q Consensus       229 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  308 (357)
                      +..+++|+.|++++|+++.+++  +..+ ++|+.|++++|.++.++  .+..+++|++|++++|.+++++  .+..+++|
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L  289 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQL  289 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTC
T ss_pred             hhcCCcCCEEEccCCccCCCcc--hhcC-CCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCCh--hhcCCCCC
Confidence            4556667777777777666543  4454 67777777777777653  3666777777777777777763  35667778


Q ss_pred             CEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        309 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      +.|++++|++++.++..+..+++|+.|++++|+++++++
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            888888887777777667777788888888888877766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=5.9e-28  Score=235.19  Aligned_cols=152  Identities=25%  Similarity=0.327  Sum_probs=135.4

Q ss_pred             EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002         94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR  173 (357)
Q Consensus        94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (357)
                      ..+-++.+++++|...-  .++++|++++|.|+.+++.+|.++ ++|++|++++|.|+.+++++|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            45677778999997652  378999999999999999999998 679999999999999999999999999999999999


Q ss_pred             cccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC-cccCCCCCCCCEEEccCCcCccc
Q psy15002        174 IALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH-SNAFQGLDTLEILTIFENKLSLI  248 (357)
Q Consensus       174 l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~  248 (357)
                      ++.+|+..|.. ++|++|++++|+++.+++..|.++++|++|++++|.+..+. +..+..+++|++|++++|+++.+
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            99999887654 99999999999999999989999999999999999998753 56677889999999988876543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4.4e-29  Score=243.06  Aligned_cols=261  Identities=18%  Similarity=0.227  Sum_probs=180.3

Q ss_pred             ceEEEEEecCCCCcC------------------cccccc--CCCcccEEEecCCCcceecCcccccccccceEEEccCCc
Q psy15002         90 LIIFYLKLRHNNLPK------------------LTGFIF--FGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE  149 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~  149 (357)
                      ..+++|++++|.++.                  +|....  ...+|++|++++|.+.+..+..+..+ ++|++|++++|.
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~  284 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNR  284 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCC
Confidence            578899999999998                  888776  66699999999999887777777777 568888888887


Q ss_pred             -Cce-eChhhhcCC------CCCcEEeccCCccccccC--CCCCCCCCCeEECCCCCCe-eeCccccCCCCcCceeeccc
Q psy15002        150 -LTR-VPQTSLSKL------ENLRKLELLHNRIALIEE--GDFEGKALTQLDLSQNSLA-VVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       150 -l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~  218 (357)
                       +++ ..+..+.++      ++|++|++++|.++.+|.  .+..+++|++|++++|+++ .++  .+..+++|++|++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC
Confidence             775 333345554      777777777777777776  5666677777777777776 444  444445555555555


Q ss_pred             ccCcccCcccCCCCC--------------------------CCCEEEccCCcCcccCCCccc-------cccccccEEEc
Q psy15002        219 NKISALHSNAFQGLD--------------------------TLEILTIFENKLSLIEPDSFK-------GLEKKLKRLNL  265 (357)
Q Consensus       219 n~l~~~~~~~l~~l~--------------------------~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l  265 (357)
                      |++..+ +..+..++                          +|+.|++++|.+++..+..+.       .. ++|+.|++
T Consensus       363 N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~L  440 (636)
T 4eco_A          363 NQITEI-PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINL  440 (636)
T ss_dssp             SEEEEC-CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEEC
T ss_pred             Cccccc-cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEEC
Confidence            544433 22233444                          455555555555444444443       33 46777777


Q ss_pred             cCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCC-------CCCEeecCCCcCcccCcccC-CCCCCCcEEeC
Q psy15002        266 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH-------NLDSLVLAHNQLRTIPPRVF-AHLPLLNSLEL  337 (357)
Q Consensus       266 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L  337 (357)
                      ++|.++.++...+..+++|++|++++|.++.++...+....       +|+.|++++|+++.+|...+ ..+++|+.|+|
T Consensus       441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L  520 (636)
T 4eco_A          441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL  520 (636)
T ss_dssp             CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEEC
T ss_pred             cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEEC
Confidence            77777777766666678888888888888877776654433       88888888888888876654 47888888888


Q ss_pred             CCCcccccCcccccCcccc
Q psy15002        338 DGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       338 ~~N~l~~~~~~~~~~l~~l  356 (357)
                      ++|+++++ |..+.++++|
T Consensus       521 s~N~l~~i-p~~~~~l~~L  538 (636)
T 4eco_A          521 SYNSFSKF-PTQPLNSSTL  538 (636)
T ss_dssp             CSSCCSSC-CCGGGGCSSC
T ss_pred             CCCCCCCc-ChhhhcCCCC
Confidence            88888885 4555566544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=6.5e-28  Score=218.04  Aligned_cols=237  Identities=26%  Similarity=0.391  Sum_probs=185.7

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecC---------------------cccccccccceEEEccC
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE---------------------SSLSSIGKKLKRLNLGG  147 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~---------------------~~~~~l~~~L~~L~ls~  147 (357)
                      ..+++|++++|.++.++.  +... +|++|++++|.+..++.                     ..+..+ ++|++|++++
T Consensus        88 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l-~~L~~L~l~~  164 (347)
T 4fmz_A           88 VKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM-TGLNYLTVTE  164 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC-TTCCEEECCS
T ss_pred             CcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhC-CCCcEEEecC
Confidence            556777777777777652  3333 67777777777665543                     012222 3466666666


Q ss_pred             CcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc
Q psy15002        148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN  227 (357)
Q Consensus       148 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  227 (357)
                      |.+..+++  +..+++|++|++++|.++.++. +...++|+++++++|.+..+++  +..+++|++|++++|.++.+++ 
T Consensus       165 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             SCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence            66665544  6677778888888887777665 4455788888888888887765  7889999999999999998865 


Q ss_pred             cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCC
Q psy15002        228 AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN  307 (357)
Q Consensus       228 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  307 (357)
                       +..+++|+.|++++|.++.+  ..+..+ ++|+.|++++|.++.++  .+..+++|++|++++|.+++.++..+.++++
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDL-TKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcC-CCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence             88999999999999999886  356666 79999999999999884  4788999999999999999998888889999


Q ss_pred             CCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      |+.|++++|+++++++  +..+++|+.|++++|+++
T Consensus       313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999999888  678999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.5e-27  Score=209.72  Aligned_cols=225  Identities=31%  Similarity=0.433  Sum_probs=206.3

Q ss_pred             cEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCC
Q psy15002        116 RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQ  194 (357)
Q Consensus       116 ~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~  194 (357)
                      +.++.+++.++.++..    ++++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+ ..++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTT----CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcC----CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            6788888888888653    23679999999999999999889999999999999999998865544 459999999999


Q ss_pred             CC-CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        195 NS-LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       195 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      |. +..+++..+..+++|++|++++|.+..+.+..+..+++|++|++++|+++.+++..+..+ ++|+.|++++|.++.+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC-CCccEEECCCCccccc
Confidence            97 999988899999999999999999999988899999999999999999999988888887 8999999999999999


Q ss_pred             CcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      ++..+..+++|++|++++|.++++.+..+..+++|+.|++++|+++++++..+..+++|+.|++++|++...
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            988899999999999999999999888999999999999999999999988889999999999999999753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=5.5e-28  Score=240.24  Aligned_cols=261  Identities=17%  Similarity=0.190  Sum_probs=184.9

Q ss_pred             ceEEEEEecCCCCcC------------------cccccc--CCCcccEEEecCCCcceecCcccccccccceEEEccCCc
Q psy15002         90 LIIFYLKLRHNNLPK------------------LTGFIF--FGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNE  149 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~  149 (357)
                      ..+++|++++|.++.                  +|....  ...+|++|++++|.+....+..+..+ ++|++|++++|.
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~  526 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNR  526 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCC
Confidence            578899999999998                  888764  44589999999999877777777777 578899998887


Q ss_pred             -Cce-eChhhhcCC-------CCCcEEeccCCccccccC--CCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        150 -LTR-VPQTSLSKL-------ENLRKLELLHNRIALIEE--GDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       150 -l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                       +++ ..+..+.++       ++|++|++++|.++.+|.  .+..+++|++|++++|.++.++  .+..+++|+.|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcC
Confidence             776 223334444       488888888888888777  6667788888888888887666  677777888888888


Q ss_pred             ccCcccCcccCCCCCC-CCEEEccCCcCcccCCCccccc------------------------------cccccEEEccC
Q psy15002        219 NKISALHSNAFQGLDT-LEILTIFENKLSLIEPDSFKGL------------------------------EKKLKRLNLGG  267 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~------------------------------~~~L~~L~l~~  267 (357)
                      |.+..+ +..+..+++ |+.|++++|+++.++ ..+...                              .++|+.|++++
T Consensus       605 N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~  682 (876)
T 4ecn_A          605 NQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY  682 (876)
T ss_dssp             SCCSCC-CTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred             Cccccc-hHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence            877754 445666676 777777777766543 222111                              02566666666


Q ss_pred             CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCC-------CCCCEeecCCCcCcccCcccC-CCCCCCcEEeCCC
Q psy15002        268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL-------HNLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDG  339 (357)
Q Consensus       268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~  339 (357)
                      |.++.++...+..+++|+.|++++|.++.++...+...       ++|+.|+|++|+++.+|.... ..+++|+.|+|++
T Consensus       683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             SCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCS
T ss_pred             CcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCC
Confidence            66666665555567778888888888877776555433       278888888888887776553 3677888888888


Q ss_pred             CcccccCcccccCcccc
Q psy15002        340 NHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       340 N~l~~~~~~~~~~l~~l  356 (357)
                      |.++++ |..+.++++|
T Consensus       763 N~L~~l-p~~l~~L~~L  778 (876)
T 4ecn_A          763 NCFSSF-PTQPLNSSQL  778 (876)
T ss_dssp             SCCSSC-CCGGGGCTTC
T ss_pred             CCCCcc-chhhhcCCCC
Confidence            888775 3444455443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.4e-28  Score=230.38  Aligned_cols=225  Identities=23%  Similarity=0.299  Sum_probs=143.3

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      +|++|++++|.++.+.+..+..+ ++|++|++++|.++++++  +.++++|++|++++|.++.++..    ++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence            45555555555555544455444 456677777766666554  66667777777777776666543    567777777


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccc-cccccccEEEccCCcCcc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFK-GLEKKLKRLNLGGNELTR  272 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~  272 (357)
                      +|.+..+++.   .+++|+.|++++|.++.+.+..+..+++|+.|++++|.+++..+..+. .+ ++|+.|++++|.+++
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l-~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-TTCCEEECTTSCCCE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-CcccEEecCCCcccc
Confidence            7777666543   345677777777777766666666667777777777777766555554 33 667777777777776


Q ss_pred             cCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc-ccCccccc
Q psy15002        273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFS  351 (357)
Q Consensus       273 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~-~~~~~~~~  351 (357)
                      +++  ...+++|+.|++++|.++++++. +..+++|+.|++++|.++++|.. +..+++|+.|++++|++. +..+..+.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            643  33466777777777777776664 55667777777777777776654 456677777777777776 33344444


Q ss_pred             Cc
Q psy15002        352 GL  353 (357)
Q Consensus       352 ~l  353 (357)
                      .+
T Consensus       260 ~l  261 (487)
T 3oja_A          260 KN  261 (487)
T ss_dssp             TC
T ss_pred             hC
Confidence            43

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=3.2e-27  Score=206.00  Aligned_cols=201  Identities=29%  Similarity=0.456  Sum_probs=150.2

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEEC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDL  192 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l  192 (357)
                      +.+.++++++.++.++...    ++++++|++++|.++.+++..|.++++|++|++++|.++.+++..+. .++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4677888888887766432    24688888888888888877788888888888888888888777654 477888888


Q ss_pred             CCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcc
Q psy15002        193 SQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTR  272 (357)
Q Consensus       193 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  272 (357)
                      ++|.++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-cccceeEecCCcCcE
Confidence            8887777777777777777777777777777777777777777777777777777766666666 677777777777777


Q ss_pred             cCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        273 VPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       273 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      +++..+..+++|++|++++|+++.+++..+..+++|+.|++++|.+.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            77666677777777777777777777666766777777777777664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.96  E-value=1.9e-28  Score=221.69  Aligned_cols=249  Identities=22%  Similarity=0.307  Sum_probs=188.0

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS  124 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~  124 (357)
                      +||..    .|.|...    .|.|...+++++|..+       +..+++|++++|.|+.+|..+|.+. +|++|++++|.
T Consensus         1 gCp~~----~C~C~~~----~v~C~~~~Lt~iP~~l-------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X            1 GCHHR----ICHCSNR----VFLCQESKVTEIPSDL-------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             -CCCS----SSEEETT----EEEEESTTCCSCCTTC-------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred             CCCCC----ccEeeCC----EEEecCCCCCccCcCc-------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence            59873    5999754    8999999998887543       4678899999999999999888877 89999999998


Q ss_pred             c-ceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCC-CCCeeeC
Q psy15002        125 L-AVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQ-NSLAVVP  201 (357)
Q Consensus       125 l-~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~-n~l~~~~  201 (357)
                      + +.++..+|.++..-++.+.+++|+++.++++.|.++++|++|++++|.++.+++..+.. .++..+++.+ +.+..++
T Consensus        66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~  145 (350)
T 4ay9_X           66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  145 (350)
T ss_dssp             TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred             CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence            7 55777788877443445777788899998888899999999999999998887765543 6677787754 6788888


Q ss_pred             ccccCCCC-cCceeecccccCcccCcccCCCCCCCCEEEcc-CCcCcccCCCccccccccccEEEccCCcCcccCccccc
Q psy15002        202 SPALKSLN-HLLILNLNHNKISALHSNAFQGLDTLEILTIF-ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLS  279 (357)
Q Consensus       202 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  279 (357)
                      ...|..+. .++.|++++|+++.+++..|. ..+|+.+++. +|.++.++.+.|..+ ++|+.|++++|+++.+++..+.
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N~l~~lp~~~~~  223 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIHSLPSYGLE  223 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTSCCCCCCSSSCT
T ss_pred             ccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCCCcCccChhhhc
Confidence            77777764 577888888888888766654 4578888886 467788877777777 7888888888888888765554


Q ss_pred             CCCCCcEEEccC-CcCceeCcCcCCCCCCCCEeecCCC
Q psy15002        280 KLENLRKLELLH-NRIALIEEGDFEGLHNLDSLVLAHN  316 (357)
Q Consensus       280 ~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n  316 (357)
                         +|+.|.+.+ +.++.+|.  +..+++|+.+++.++
T Consensus       224 ---~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          224 ---NLKKLRARSTYNLKKLPT--LEKLVALMEASLTYP  256 (350)
T ss_dssp             ---TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSCH
T ss_pred             ---cchHhhhccCCCcCcCCC--chhCcChhhCcCCCC
Confidence               444444333 34666663  566788888888765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=6.7e-28  Score=232.21  Aligned_cols=257  Identities=24%  Similarity=0.291  Sum_probs=181.8

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLS  134 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  134 (357)
                      .|.|... ....++|...+++.+|..+       +..+++|++++|.++.+|.   ...+|++|++++|.++.++.    
T Consensus        34 ~~~c~~~-~l~~L~ls~n~L~~lp~~l-------~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----   98 (622)
T 3g06_A           34 MRACLNN-GNAVLNVGESGLTTLPDCL-------PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----   98 (622)
T ss_dssp             HHHHHHH-CCCEEECCSSCCSCCCSCC-------CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----
T ss_pred             cccccCC-CCcEEEecCCCcCccChhh-------CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----
Confidence            4777654 2458889888888776432       3678899999999999887   23489999999999988765    


Q ss_pred             cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccC--------
Q psy15002        135 SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALK--------  206 (357)
Q Consensus       135 ~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------  206 (357)
                      .+ ++|++|++++|.++.++.    .+++|++|++++|.++.+|...   ++|++|++++|+++.++. .+.        
T Consensus        99 ~l-~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~  169 (622)
T 3g06_A           99 LP-PGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPA-LPSELCKLWAY  169 (622)
T ss_dssp             CC-TTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCC-CCTTCCEEECC
T ss_pred             CC-CCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCC-ccCCCCEEECC
Confidence            22 679999999998888775    5677888888888888877643   678888888887776653 111        


Q ss_pred             ---------CCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCccc
Q psy15002        207 ---------SLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTS  277 (357)
Q Consensus       207 ---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  277 (357)
                               .+++|+.|++++|.++.++.    .+++|+.|++++|.++.++.     .+++|+.|++++|.++.++   
T Consensus       170 ~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~~lp---  237 (622)
T 3g06_A          170 NNQLTSLPMLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLP---  237 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCC---
T ss_pred             CCCCCCCcccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC-----CCCCCCEEEccCCccCcCC---
Confidence                     12445555555555544322    12455555555555554432     1256788888888877766   


Q ss_pred             ccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCc
Q psy15002        278 LSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       278 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                       ..+++|+.|++++|.++.++.    .+++|+.|++++|+|+.+|.. +.++++|+.|+|++|++++..+..|..+
T Consensus       238 -~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             -CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCCcCHHHHHhc
Confidence             345778888888888887766    367888888888888888654 5778888889999888888777765544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=3.7e-27  Score=205.58  Aligned_cols=199  Identities=28%  Similarity=0.461  Sum_probs=169.9

Q ss_pred             EEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc
Q psy15002         95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI  174 (357)
Q Consensus        95 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  174 (357)
                      ++++++.++.+|....  .++++|++++|.++.++...+..+ ++|++|++++|.++.++...|.++++|++|++++|.+
T Consensus        21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred             EEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence            3333444444444322  356777777777777766666666 6799999999999999998889999999999999999


Q ss_pred             ccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcc
Q psy15002        175 ALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF  253 (357)
Q Consensus       175 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (357)
                      +.++...+. .++|++|++++|+++.+++..|..+++|++|++++|.+..+++..+..+++|+.|++++|+++.+++..|
T Consensus        98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  177 (270)
T 2o6q_A           98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF  177 (270)
T ss_dssp             CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence            999887765 4999999999999999999889999999999999999999988889999999999999999999988888


Q ss_pred             ccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       254 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      ..+ ++|+.|++++|.++.+++..+..+++|+.|++++|.+...
T Consensus       178 ~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          178 DKL-TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             ccC-CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            887 8999999999999999988888999999999999987654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=8.6e-29  Score=220.98  Aligned_cols=246  Identities=18%  Similarity=0.237  Sum_probs=212.1

Q ss_pred             CceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002         89 GLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        89 ~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  167 (357)
                      ...+++|++++|.++.+++..|... +|++|++++|.++.+.+  +..+ ++|++|++++|.+++++.     .++|++|
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~Ls~n~l~~l~~-----~~~L~~L  104 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELLV-----GPSIETL  104 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC-TTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc-CCCCEEECcCCccccccC-----CCCcCEE
Confidence            3678999999999999988777766 89999999999987765  6666 679999999999998764     4899999


Q ss_pred             eccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccC-CCCCCCCEEEccCCcCc
Q psy15002        168 ELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF-QGLDTLEILTIFENKLS  246 (357)
Q Consensus       168 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~  246 (357)
                      ++++|.++.++...  .++|++|++++|+++.+++..+..+++|++|++++|.+..+.+..+ ..+++|+.|++++|+++
T Consensus       105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            99999999888665  4789999999999999988889999999999999999998877666 46899999999999999


Q ss_pred             ccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc-ccCccc
Q psy15002        247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR-TIPPRV  325 (357)
Q Consensus       247 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~  325 (357)
                      .++...  .+ ++|+.|++++|.++.+++. +..+++|++|++++|.++.++. .+..+++|+.|++++|++. +..+..
T Consensus       183 ~~~~~~--~l-~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          183 DVKGQV--VF-AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             EEECCC--CC-TTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             cccccc--cc-ccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHH
Confidence            885433  24 7999999999999999875 8889999999999999999876 5788999999999999998 555566


Q ss_pred             CCCCCCCcEEeCCCC-cccccCccc
Q psy15002        326 FAHLPLLNSLELDGN-HIHTVDPAA  349 (357)
Q Consensus       326 ~~~~~~L~~L~L~~N-~l~~~~~~~  349 (357)
                      +..+++|+.++++++ .+++.++..
T Consensus       258 ~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          258 FSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             HHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             HhccccceEEECCCchhccCCchhc
Confidence            788889999998854 566655544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.1e-27  Score=236.05  Aligned_cols=269  Identities=18%  Similarity=0.236  Sum_probs=153.3

Q ss_pred             hHHHHHhhhc--cCCCceEEEEEecCCCCcCccc--cccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCc
Q psy15002         76 KIQHTMTTLK--SKSGLIIFYLKLRHNNLPKLTG--FIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELT  151 (357)
Q Consensus        76 ~i~~~~~~~~--~~~~~~l~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~  151 (357)
                      .+|..+..+.  -.....+++|++++|.++.+|.  ......+|+.|++++|.++.++  .+..+ ++|++|++++|.++
T Consensus       532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L-~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN-VKLTDLKLDYNQIE  608 (876)
T ss_dssp             HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT-SEESEEECCSSCCS
T ss_pred             cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC-CcceEEECcCCccc
Confidence            3666555443  1112467788888888887776  3334447888888888777555  55555 56788888888777


Q ss_pred             eeChhhhcCCCC-CcEEeccCCccccccCCCCCC--CCCCeEECCCCCCeeeCccc---cC--CCCcCceeecccccCcc
Q psy15002        152 RVPQTSLSKLEN-LRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLAVVPSPA---LK--SLNHLLILNLNHNKISA  223 (357)
Q Consensus       152 ~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~~n~l~~  223 (357)
                      .++.. +.++++ |++|++++|.++.+|..+...  ++|+.|++++|++....+..   +.  .+++|+.|++++|.+..
T Consensus       609 ~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~  687 (876)
T 4ecn_A          609 EIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK  687 (876)
T ss_dssp             CCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred             cchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc
Confidence            66543 677777 788888877777776554433  23666666666654432211   11  22355666666666655


Q ss_pred             cCcccCCCCCCCCEEEccCCcCcccCCCcccccc------ccccEEEccCCcCcccCccccc--CCCCCcEEEccCCcCc
Q psy15002        224 LHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE------KKLKRLNLGGNELTRVPQTSLS--KLENLRKLELLHNRIA  295 (357)
Q Consensus       224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~  295 (357)
                      ++...+..+++|+.|++++|+++.++...+....      ++|+.|++++|.++.++.. +.  .+++|+.|++++|.++
T Consensus       688 lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~  766 (876)
T 4ecn_A          688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFS  766 (876)
T ss_dssp             CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCS
T ss_pred             cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCC
Confidence            5444444556666666666666655444333210      1566666666666655532 32  5566666666666666


Q ss_pred             eeCcCcCCCCCCCCEeecCC------CcCcccCcccCCCCCCCcEEeCCCCcccccCcccc
Q psy15002        296 LIEEGDFEGLHNLDSLVLAH------NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF  350 (357)
Q Consensus       296 ~~~~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~  350 (357)
                      +++. .+.++++|+.|+|++      |++.+..+..+.++++|+.|+|++|++..++...+
T Consensus       767 ~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~  826 (876)
T 4ecn_A          767 SFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT  826 (876)
T ss_dssp             SCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred             ccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc
Confidence            5433 344455555555544      44444444444555555555555555544444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=3.8e-27  Score=221.42  Aligned_cols=237  Identities=29%  Similarity=0.388  Sum_probs=129.2

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..+++|++++|.++.+++ .....+|++|++++|.+..+.+  +..+ ++|++|++++|.++.+++  +.++++|++|++
T Consensus        68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP--LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCC-CCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence            566778888887777766 2223377777777777776654  4554 567777777777777654  667777777777


Q ss_pred             cCCccccccC--------------------CCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccC
Q psy15002        170 LHNRIALIEE--------------------GDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAF  229 (357)
Q Consensus       170 ~~n~l~~~~~--------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  229 (357)
                      ++|.++.++.                    .+...++|++|++++|.+..++  .+..+++|++|++++|.+....+  +
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~  217 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--L  217 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--c
Confidence            7776655432                    1222355666666666665553  25555666666666666555433  3


Q ss_pred             CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCC
Q psy15002        230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD  309 (357)
Q Consensus       230 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  309 (357)
                      ..+++|+.|++++|+++.++  .+..+ ++|+.|++++|.++.+++  +..+++|++|++++|.++.+++  +..+++|+
T Consensus       218 ~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  290 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT  290 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             cccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence            44455555555555554431  23333 445555555555544432  4444444444444444444433  33344444


Q ss_pred             EeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        310 SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       310 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      .|++++|+++++++  +..+++|+.|++++|+++++
T Consensus       291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence            44444444444333  23334444444444444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.5e-27  Score=212.33  Aligned_cols=244  Identities=24%  Similarity=0.249  Sum_probs=174.8

Q ss_pred             CceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         89 GLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        89 ~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ...++.|++++|.++.+|...+...+|++|++++|.++.++ ..+..+ ++|++|++++|.++.++. .+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l-~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQF-AGLETLTLARNPLRALPA-SIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGG-TTCSEEEEESCCCCCCCG-GGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh-HHHhcc-CCCCEEECCCCccccCcH-HHhcCcCCCEEE
Confidence            36678899999999988887776557777777777777443 344555 567777777777776654 477777777777


Q ss_pred             ccCCcc-ccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        169 LLHNRI-ALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       169 l~~n~l-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      +++|.+ +.+|..+..      ..         ....+.++++|++|++++|+++.+ +..+..+++|+.|++++|++++
T Consensus       157 L~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc
Confidence            777543 344443321      00         012355678888888888888866 4557888888889998888887


Q ss_pred             cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCC
Q psy15002        248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA  327 (357)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  327 (357)
                      +++ .+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+.
T Consensus       221 l~~-~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          221 LGP-AIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CCG-GGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             Cch-hhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            644 56666 7899999998888777667788888999999999887777666788889999999999887766666678


Q ss_pred             CCCCCcEEeCCCCcccccCcccccCc
Q psy15002        328 HLPLLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       328 ~~~~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      ++++|+.+++..+.+..+........
T Consensus       299 ~L~~L~~l~l~~~~~~~l~~~~~~~~  324 (328)
T 4fcg_A          299 QLPANCIILVPPHLQAQLDQHRPVAR  324 (328)
T ss_dssp             GSCTTCEEECCGGGSCC---------
T ss_pred             hccCceEEeCCHHHHHHHhhhhcccc
Confidence            88999999998887777665544433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=7.6e-28  Score=230.80  Aligned_cols=176  Identities=18%  Similarity=0.268  Sum_probs=151.5

Q ss_pred             EEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc
Q psy15002         95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI  174 (357)
Q Consensus        95 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  174 (357)
                      .+.+++.++.+|...+  .++++|++++|.++.+.+..+..+ ++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus        10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            6788999999999765  589999999999999998888888 6799999999999999999999999999999999999


Q ss_pred             ccccCC-CCCCCCCCeEECCCCCCeeeC-ccccCCCCcCceeeccccc-CcccCcccCCCCCCCCEEEccCCcCcccCCC
Q psy15002        175 ALIEEG-DFEGKALTQLDLSQNSLAVVP-SPALKSLNHLLILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLIEPD  251 (357)
Q Consensus       175 ~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  251 (357)
                      +.+++. +..+++|++|++++|.++.++ +..+..+++|++|++++|. +..+++..+.++++|++|++++|++++..+.
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            988877 555699999999999998753 3578999999999999998 6777777899999999999999999887665


Q ss_pred             ccccc-----------------------cccccEEEccCCcCccc
Q psy15002        252 SFKGL-----------------------EKKLKRLNLGGNELTRV  273 (357)
Q Consensus       252 ~~~~~-----------------------~~~L~~L~l~~n~l~~~  273 (357)
                      .+..+                       .++|+.|++++|.+++.
T Consensus       167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence            55432                       15677777777776653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.1e-26  Score=218.37  Aligned_cols=192  Identities=32%  Similarity=0.441  Sum_probs=95.5

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      +|++|++++|.++.++  .+.++++|++|++++|.++.+++ ....++|++|++++|+++.++  .+..+++|+.|++++
T Consensus       178 ~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          178 TLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLAN  252 (466)
T ss_dssp             TCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCS
T ss_pred             CCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCC
Confidence            4555555555555543  25555666666666665554443 223355555555555555442  344555555555555


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      |.+....+  +..+++|+.|++++|+++.+++  +..+ ++|+.|++++|.++++++  +..+++|+.|++++|++++++
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence            55554433  4455555555555555554432  3333 455555555555554432  444455555555555554443


Q ss_pred             cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccC
Q psy15002        299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                      +  +..+++|+.|++++|++++++  .+..+++|+.|++++|++++..
T Consensus       326 ~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          326 P--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred             h--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence            3  333444444444444444442  1344444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3.1e-27  Score=211.75  Aligned_cols=214  Identities=22%  Similarity=0.254  Sum_probs=171.3

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      ..++.|++++|.++.++.. +.++++|++|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECC
Confidence            3467777777777766654 555777777777777777776666666777777777777775543 56777777777777


Q ss_pred             cccCcccCcccC---------CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEE
Q psy15002        218 HNKISALHSNAF---------QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  288 (357)
Q Consensus       218 ~n~l~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  288 (357)
                      +|.+....+..+         .++++|+.|++++|+++.+ +..+..+ ++|+.|++++|.++++++ .+..+++|++|+
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l-~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~  235 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANL-QNLKSLKIRNSPLSALGP-AIHHLPKLEELD  235 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGGGC-TTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhcCC-CCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence            765554444444         3489999999999999976 4567777 899999999999999886 488999999999


Q ss_pred             ccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      +++|.+.+..+..+.++++|+.|++++|.+.+..+..+.++++|+.|+|++|++.+..|+.+++++++
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L  303 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN  303 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence            99999988888889999999999999998887666667899999999999999999999999998865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=5.3e-26  Score=212.53  Aligned_cols=230  Identities=20%  Similarity=0.229  Sum_probs=128.1

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..+++|++++|.++.++   +... +|++|++++|.++.++   +..+ ++|++|++++|.++.++   +.++++|++|+
T Consensus        64 ~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l-~~L~~L~L~~N~l~~l~---~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPL-TKLTYLNCDTNKLTKLD---VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTC-TTCCEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCC-CcCCEEECCCCcCCeec---CCCCCcCCEEE
Confidence            44556666666666654   2222 5666666666665552   3333 45666666666666653   55666666666


Q ss_pred             ccCCccccccCCCCCCCCCCeEECCCCC-CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        169 LLHNRIALIEEGDFEGKALTQLDLSQNS-LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      +++|.++.++  +...++|++|++++|+ +..+   .+..+++|++|++++|+++.++   +..+++|+.|++++|+++.
T Consensus       134 l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          134 CARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             CTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred             CCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe
Confidence            6666666553  3444566666666663 3333   2455666666666666666653   5556666666666666665


Q ss_pred             cCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc----
Q psy15002        248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP----  323 (357)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----  323 (357)
                      ++   +..+ ++|+.|++++|++++++   +..+++|+.|++++|++++++...+   ++|+.|++++|+++.+.-    
T Consensus       206 ~~---l~~l-~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l---~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          206 LD---LNQN-IQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             CC---CTTC-TTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTC---TTCCEEECTTCCCSCCCCTTCT
T ss_pred             ec---cccC-CCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHC---CCCCEEeccCCCCCEEECCCCc
Confidence            52   4444 56666666666666654   5556666666666666666654333   333333333333322110    


Q ss_pred             ----ccCCCCCCCcEEeCCCCcccccCc
Q psy15002        324 ----RVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       324 ----~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                          ..+..+++|+.|++++|+..+..+
T Consensus       276 ~~~~~~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          276 QLIYFQAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             TCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             cCCcccccccccCCEEECCCCcccceec
Confidence                013455677777777775444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.9e-27  Score=223.00  Aligned_cols=257  Identities=18%  Similarity=0.250  Sum_probs=216.9

Q ss_pred             EEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEE
Q psy15002         66 DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLN  144 (357)
Q Consensus        66 ~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~  144 (357)
                      ...........+|..+..+... +..+++|++++|.++.+++..|... +|++|++++|.++.+.+  +..+ ++|++|+
T Consensus        11 ~~~~~~~~~~~l~~~l~~l~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~   86 (487)
T 3oja_A           11 RYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLD   86 (487)
T ss_dssp             EEEEESCCTTTHHHHHHTTSTT-GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEE
T ss_pred             eeecccCchhhhHHHHHHhccc-CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEE
Confidence            3444455556677776665432 3689999999999999998888776 89999999999987765  6666 6799999


Q ss_pred             ccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCccc
Q psy15002        145 LGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL  224 (357)
Q Consensus       145 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  224 (357)
                      +++|.++++++     .++|++|++++|.++.++...  .++|++|++++|.++.+.+..+..+++|+.|++++|.++..
T Consensus        87 Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A           87 LNNNYVQELLV-----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             CCSSEEEEEEE-----CTTCCEEECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             ecCCcCCCCCC-----CCCcCEEECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            99999998864     389999999999999888764  37899999999999999888899999999999999999998


Q ss_pred             CcccCC-CCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC
Q psy15002        225 HSNAFQ-GLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE  303 (357)
Q Consensus       225 ~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  303 (357)
                      .+..+. .+++|+.|++++|.++++++..  .+ ++|+.|++++|.++++++. +..+++|+.|++++|.+++++. .+.
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~  234 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALR  234 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCC
T ss_pred             ChHHHhhhCCcccEEecCCCccccccccc--cC-CCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhc
Confidence            777775 7899999999999999885433  34 7999999999999999875 8889999999999999999877 477


Q ss_pred             CCCCCCEeecCCCcCc-ccCcccCCCCCCCcEEeCC
Q psy15002        304 GLHNLDSLVLAHNQLR-TIPPRVFAHLPLLNSLELD  338 (357)
Q Consensus       304 ~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~  338 (357)
                      .+++|+.|++++|.+. +..+..+..++.|+.++++
T Consensus       235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            8899999999999998 4444456777778877775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=4.3e-26  Score=199.45  Aligned_cols=231  Identities=25%  Similarity=0.337  Sum_probs=154.7

Q ss_pred             CceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccc
Q psy15002         55 PCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLS  134 (357)
Q Consensus        55 ~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  134 (357)
                      ||.|...  ...+.|...++.++|..+       +..+++|++++|.++.++                       ...+.
T Consensus         2 ~C~~~~~--~~~~~c~~~~l~~ip~~l-------~~~l~~L~ls~n~l~~~~-----------------------~~~~~   49 (276)
T 2z62_A            2 PCVEVVP--NITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLG-----------------------SYSFF   49 (276)
T ss_dssp             CSEEEET--TTEEECTTSCCSSCCSSS-------CTTCCEEECTTCCCCEEC-----------------------TTTTT
T ss_pred             CceeccC--CceEEecCCCccccCCCC-------CCCccEEECCCCcccccC-----------------------HhHhc
Confidence            6888754  348899887776666422       234445555555554444                       44444


Q ss_pred             cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCce
Q psy15002        135 SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLI  213 (357)
Q Consensus       135 ~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  213 (357)
                      .+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. +++|++|++++|.+..+++..+..+++|++
T Consensus        50 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  128 (276)
T 2z62_A           50 SF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (276)
T ss_dssp             TC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             cc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence            44 4566666666666666666666666677777776666666544333 366777777777776666656677777777


Q ss_pred             eecccccCcccC-cccCCCCCCCCEEEccCCcCcccCCCcccccccccc----EEEccCCcCcccCcccccCCCCCcEEE
Q psy15002        214 LNLNHNKISALH-SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK----RLNLGGNELTRVPQTSLSKLENLRKLE  288 (357)
Q Consensus       214 L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~  288 (357)
                      |++++|.+..+. +..+..+++|+.|++++|+++.+.+..+..+ .+++    .|++++|.++.+++..+.. .+|++|+
T Consensus       129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~  206 (276)
T 2z62_A          129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELA  206 (276)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEE
T ss_pred             EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCccccCC-CcccEEE
Confidence            777777776643 5667777777777777777777766666555 4555    7778888887777654443 4788888


Q ss_pred             ccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002        289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      +++|.++++++..+..+++|+.|++++|++..
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            88888888777777777888888888887763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=2e-26  Score=201.11  Aligned_cols=206  Identities=25%  Similarity=0.340  Sum_probs=155.5

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      ++|+.|++++|.++.++.  +..+++|++|++++|.++.++ .+...++|++|++++|.++.+++..+..+++|++|+++
T Consensus        41 ~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            467777777777776653  677777888888887777654 44555778888888888777777677777888888888


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      +|+++.+++..+..+++|+.|++++|+++.+++..+..+ ++|+.|++++|.++.+++..+..+++|++|++++|.++++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            888877777777777888888888888877776666666 6788888888888877776677778888888888888887


Q ss_pred             CcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcc
Q psy15002        298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       298 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      ++..+..+++|+.|++++|.+.       ..++.++.+++++|.++|..|..++.+.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            7777777888888888888654       2355677788888888877777766654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.94  E-value=2.3e-26  Score=196.92  Aligned_cols=199  Identities=19%  Similarity=0.346  Sum_probs=179.7

Q ss_pred             CceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCC-CeeeCccccCCCCcCceeeccc-ccCcccCc
Q psy15002        150 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNS-LAVVPSPALKSLNHLLILNLNH-NKISALHS  226 (357)
Q Consensus       150 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~  226 (357)
                      ++.+|.  +  .++|++|++++|.++.+++..+. .++|++|++++|+ ++.+++..|.++++|++|++++ |.++.+++
T Consensus        23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            555654  2  34899999999999999987664 4999999999997 9999998999999999999999 99999988


Q ss_pred             ccCCCCCCCCEEEccCCcCcccCCCcccccccccc---EEEccCC-cCcccCcccccCCCCCc-EEEccCCcCceeCcCc
Q psy15002        227 NAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLK---RLNLGGN-ELTRVPQTSLSKLENLR-KLELLHNRIALIEEGD  301 (357)
Q Consensus       227 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~  301 (357)
                      ..|.++++|+.|++++|+++.++.  +..+ ++++   .|++++| .++.+++..+..+++|+ +|++++|+++.++...
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~--~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~  175 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD--LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA  175 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC--CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc--cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence            899999999999999999998754  6666 6787   9999999 99999988899999999 9999999999999988


Q ss_pred             CCCCCCCCEeecCCCc-CcccCcccCCCC-CCCcEEeCCCCcccccCcccccCcccc
Q psy15002        302 FEGLHNLDSLVLAHNQ-LRTIPPRVFAHL-PLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       302 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      +.. ++|+.|++++|+ ++.+++..|..+ ++|+.|++++|+++++++..|.+++.|
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L  231 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL  231 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCcee
Confidence            876 899999999995 999999999999 999999999999999999988888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=1.4e-25  Score=197.33  Aligned_cols=198  Identities=28%  Similarity=0.344  Sum_probs=143.3

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      +++++++.++.++.++....    +++++|++++|.++.+++..|.++++|++|++++|.++.++.. ...++|++|+++
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             CccEEECCCCCCCcCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence            67788888888877764432    4688888888888888777788888888888888888877664 445777777777


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      +|+++.++. .+..+++|++|++++|+++.+++..|.++++|+.|++++|+++.+++..|..+ ++|+.|++++|+++.+
T Consensus        86 ~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           86 HNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCSCC
T ss_pred             CCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-cCCCEEECCCCcCCcc
Confidence            777776654 55667777777777777777766677777777777777777777766666666 6777777777777777


Q ss_pred             CcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      ++..+..+++|+.|++++|+++.++...+ ..++|+.+++++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCcc
Confidence            76666667777777777777776666433 3556777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=1.9e-25  Score=196.57  Aligned_cols=198  Identities=27%  Similarity=0.280  Sum_probs=173.6

Q ss_pred             EEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccC
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH  171 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  171 (357)
                      ++.++++++.++.+|...+  .+++.|++++|.++.+.+..+..+ ++|++|++++|.++.++..  ..+++|++|++++
T Consensus        12 l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSH   86 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC--SCCTTCCEEECCS
T ss_pred             ccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC--CCCCcCCEEECCC
Confidence            3456666666777766554  367888888888888888888877 6799999999999998764  7899999999999


Q ss_pred             CccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCC
Q psy15002        172 NRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD  251 (357)
Q Consensus       172 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  251 (357)
                      |.++.+|..+...++|++|++++|+++.+++..|..+++|++|++++|+++.+++..|..+++|+.|++++|+++.+++.
T Consensus        87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G           87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence            99999998887789999999999999999988999999999999999999999998899999999999999999999888


Q ss_pred             ccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002        252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL  296 (357)
Q Consensus       252 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  296 (357)
                      .|..+ ++|+.|++++|.++.++.. +....+|+.+++++|.+..
T Consensus       167 ~~~~l-~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          167 LLNGL-ENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTC-TTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCC
T ss_pred             HhcCc-CCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCccC
Confidence            88887 8999999999999998865 5567799999999998764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=4.1e-25  Score=206.57  Aligned_cols=226  Identities=22%  Similarity=0.248  Sum_probs=189.3

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..+++|++++|.++.+| ......+|++|++++|.++.++   +..+ ++|++|++++|.+++++   +.++++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l-~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQN-TNLTYLACDSNKLTNLD---VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTC-TTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccC-CCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence            56789999999999987 3333348999999999999874   5555 67999999999999984   789999999999


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccccc-CcccCcccCCCCCCCCEEEccCCcCccc
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK-ISALHSNAFQGLDTLEILTIFENKLSLI  248 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~  248 (357)
                      ++|.++.++  +...++|++|++++|+++.++   +..+++|++|++++|. +..+   .+..+++|+.|++++|+++.+
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence            999999885  666799999999999999874   7789999999999994 4444   477889999999999999997


Q ss_pred             CCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002        249 EPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH  328 (357)
Q Consensus       249 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  328 (357)
                      +   +..+ ++|+.|++++|.++.++   +..+++|++|++++|++++++   +..+++|+.|++++|++++++...   
T Consensus       186 ~---l~~l-~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~---  252 (457)
T 3bz5_A          186 D---VSQN-KLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVST---  252 (457)
T ss_dssp             C---CTTC-TTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTT---
T ss_pred             c---cccC-CCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHH---
Confidence            4   5566 79999999999999884   778899999999999999976   677899999999999999988544   


Q ss_pred             CCCCcEEeCCCCcccc
Q psy15002        329 LPLLNSLELDGNHIHT  344 (357)
Q Consensus       329 ~~~L~~L~L~~N~l~~  344 (357)
                      +++|+.|++++|.++.
T Consensus       253 l~~L~~L~l~~n~L~~  268 (457)
T 3bz5_A          253 LSKLTTLHCIQTDLLE  268 (457)
T ss_dssp             CTTCCEEECTTCCCSC
T ss_pred             CCCCCEEeccCCCCCE
Confidence            4555544444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=3.9e-25  Score=190.60  Aligned_cols=177  Identities=29%  Similarity=0.447  Sum_probs=95.5

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      ..++++++++.++.++...   .+++++|++++|.++.+++..+. +++|++|++++|.++.+++..|..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3555666666666555431   14555666666665555443332 2555555555555555555555555555555555


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      +|+++.+++..|..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|+++.+
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            555555555555555555555555555555544444444 4555555555555555544455555555555555555555


Q ss_pred             CcCcCCCCCCCCEeecCCCcCc
Q psy15002        298 EEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       298 ~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      ++..+..+++|+.|++++|++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHHhCCCCCCEEEeeCCcee
Confidence            5545555555555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=209.76  Aligned_cols=230  Identities=22%  Similarity=0.270  Sum_probs=175.3

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..++.|++++|.++.+|...+  .+|+.|++++|.++.++.     ..++|++|++++|.++.++.    .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            347899999999999998776  589999999999998776     23679999999999999886    6899999999


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCC-----------------C
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQG-----------------L  232 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-----------------l  232 (357)
                      ++|.++.+|.   ..++|++|++++|+++.++.    .+++|++|++++|.++.++. .+..                 +
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~  180 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLP  180 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC
T ss_pred             cCCcCCCCCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccC
Confidence            9999999887   45889999999999999875    24889999999998887643 2211                 1


Q ss_pred             CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEee
Q psy15002        233 DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLV  312 (357)
Q Consensus       233 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  312 (357)
                      ++|+.|++++|.++.++..     +++|+.|++++|.++.++.    .+++|++|++++|.++.++    ..+++|+.|+
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~  247 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELM  247 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCCCc-----cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEE
Confidence            4445555555554443221     1455555555555555442    2367888888888888876    3468899999


Q ss_pred             cCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        313 LAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       313 L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      +++|+|+.+|.    .+++|+.|+|++|.++.++ ..|.++++|
T Consensus       248 Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L  286 (622)
T 3g06_A          248 VSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSE  286 (622)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTT
T ss_pred             CCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhcccc
Confidence            99999998876    4578999999999999775 557776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3e-27  Score=210.52  Aligned_cols=231  Identities=17%  Similarity=0.135  Sum_probs=186.7

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeC-hhhhc-------CCCCCcEEeccCCccc-cccCCC--C
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVP-QTSLS-------KLENLRKLELLHNRIA-LIEEGD--F  182 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~-~~~~~-------~l~~L~~L~l~~n~l~-~~~~~~--~  182 (357)
                      +++.+++.+|.+ .++. .+.   ..|++|++++|.++... +..+.       ++++|++|++++|.++ .+|..+  .
T Consensus        44 ~L~~l~l~~n~l-~~p~-~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLG-QFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             ECTTHHHHCCTT-CCCH-HHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CceeEeeccccc-ccHH-HHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            788999999998 4442 222   44999999999996522 22233       6999999999999998 577766  4


Q ss_pred             CCCCCCeEECCCCCCeeeCccccCCC-----CcCceeecccccCcccCcccCCCCCCCCEEEccCCcCccc---C-CCcc
Q psy15002        183 EGKALTQLDLSQNSLAVVPSPALKSL-----NHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLI---E-PDSF  253 (357)
Q Consensus       183 ~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~-~~~~  253 (357)
                      ..++|++|++++|+++.+ +..+..+     ++|++|++++|++..+++..+..+++|++|++++|++.+.   . ...+
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            559999999999999988 4566665     8999999999999999989999999999999999997653   1 1123


Q ss_pred             ccccccccEEEccCCcCccc---CcccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcccCCCC
Q psy15002        254 KGLEKKLKRLNLGGNELTRV---PQTSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPRVFAHL  329 (357)
Q Consensus       254 ~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  329 (357)
                      ..+ ++|+.|++++|.++.+   +...+..+++|++|++++|.+++.++ ..+..+++|+.|++++|+++.+|...+   
T Consensus       198 ~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---  273 (312)
T 1wwl_A          198 LKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---  273 (312)
T ss_dssp             TSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---
T ss_pred             ccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc---
Confidence            556 7999999999999954   33445678999999999999999763 456678999999999999999987654   


Q ss_pred             CCCcEEeCCCCcccccCcccccCcccc
Q psy15002        330 PLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       330 ~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      ++|+.|++++|++++++.  |..+++|
T Consensus       274 ~~L~~L~Ls~N~l~~~p~--~~~l~~L  298 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRNPS--PDELPQV  298 (312)
T ss_dssp             SEEEEEECCSSCCCSCCC--TTTSCEE
T ss_pred             CCceEEECCCCCCCCChh--HhhCCCC
Confidence            899999999999999943  7776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=2.9e-25  Score=193.72  Aligned_cols=203  Identities=29%  Similarity=0.400  Sum_probs=183.6

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      ++..+++.++.+.....  ...+++|++|++++|.++.++. +...++|++|++++|.++.++  .+..+++|++|++++
T Consensus        20 ~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTT
T ss_pred             HHHHHHhcCcccccccc--cccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCC
Confidence            46677788888777643  6788999999999999988764 556699999999999999874  688999999999999


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      |.++.+++..+..+++|++|++++|+++.+++..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|++++++
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            99999988889999999999999999999988888888 89999999999999999888899999999999999999999


Q ss_pred             cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      +..+..+++|+.|++++|+++++++..+..+++|+.|++++|++.+..+
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            9888999999999999999999999888999999999999999987654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.8e-24  Score=202.02  Aligned_cols=198  Identities=18%  Similarity=0.250  Sum_probs=133.5

Q ss_pred             EEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEc
Q psy15002         66 DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL  145 (357)
Q Consensus        66 ~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~l  145 (357)
                      .+++.+.+++.+|..        +..+++|++++|.++.+|...   .+|++|++++|.++.++.     .+++|++|++
T Consensus        75 ~L~l~~~~l~~lp~~--------~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L  138 (454)
T 1jl5_A           75 ELELNNLGLSSLPEL--------PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPPLLEYLGV  138 (454)
T ss_dssp             EEECTTSCCSCCCSC--------CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCTTCCEEEC
T ss_pred             EEEecCCccccCCCC--------cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccC-----CCCCCCEEEC
Confidence            677777776665531        367889999999988887532   478888888888877643     2256888888


Q ss_pred             cCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC
Q psy15002        146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH  225 (357)
Q Consensus       146 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  225 (357)
                      ++|.+++++  .+.++++|++|++++|.++.+|...   .+|++|++++|+++.++  .+..+++|++|++++|+++.++
T Consensus       139 ~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          139 SNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             CSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred             cCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCC
Confidence            888888876  3888888888888888888776543   47888888888887765  4677777777777777776643


Q ss_pred             cccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        226 SNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       226 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      ..    .++|+.|++++|+++.++  .+..+ ++|+.|++++|.+++++..    +++|++|++++|.++++
T Consensus       212 ~~----~~~L~~L~l~~n~l~~lp--~~~~l-~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          212 DL----PLSLESIVAGNNILEELP--ELQNL-PFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             CC----CTTCCEEECCSSCCSSCC--CCTTC-TTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCC
T ss_pred             CC----cCcccEEECcCCcCCccc--ccCCC-CCCCEEECCCCcCCccccc----ccccCEEECCCCccccc
Confidence            21    146666666666666543  24444 5566666666666554421    24455555555544443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.93  E-value=6.2e-25  Score=195.06  Aligned_cols=191  Identities=28%  Similarity=0.409  Sum_probs=94.2

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      +|++|++++|.++.++  .+..+++|++|++++|.++.+++ +..+++|++|++++|.++.++  .+..+++|++|++++
T Consensus        42 ~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred             CcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence            3555555555554443  24445555555555555554444 333345555555555554443  344455555555555


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      |+++.+++  +..+++|+.|++++|+++.+.+  +..+ ++|+.|++++|.++.+++  +..+++|+.|++++|.+++++
T Consensus       117 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            55544422  4445555555555555544432  3333 455555555555554443  444555555555555555544


Q ss_pred             cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      +  +..+++|+.|++++|+++++++  +..+++|+.|++++|++++.
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            3  3445555555555555555443  34455555555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.92  E-value=6.4e-25  Score=198.57  Aligned_cols=239  Identities=19%  Similarity=0.291  Sum_probs=200.4

Q ss_pred             EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcC-ceeChhhhcCCCCCcE-Eecc
Q psy15002         93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNEL-TRVPQTSLSKLENLRK-LELL  170 (357)
Q Consensus        93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~-L~l~  170 (357)
                      +.++.++++++++|...+  .++++|++++|+++.++..+|.++ ++|++|++++|.+ +.++.++|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            367889999999998764  378999999999999999999988 6799999999997 5588888999998876 6667


Q ss_pred             CCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeeccc-ccCcccCcccCCCCC-CCCEEEccCCcCcc
Q psy15002        171 HNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH-NKISALHSNAFQGLD-TLEILTIFENKLSL  247 (357)
Q Consensus       171 ~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~  247 (357)
                      +|+++.+++..|.. ++|++|++++|++..+++..+....++..+++.+ +.+..++...|..+. .++.|++++|+++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            89999998887665 9999999999999999887777777888888865 678888888887775 68899999999999


Q ss_pred             cCCCccccccccccEEEcc-CCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccC
Q psy15002        248 IEPDSFKGLEKKLKRLNLG-GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF  326 (357)
Q Consensus       248 ~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  326 (357)
                      +++..|..  .+++.+++. +|.++.+++..|..+++|++|++++|+++.++...+.++++|+.++  .+.++.+|+  +
T Consensus       169 i~~~~f~~--~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~--~~~l~~lP~--l  242 (350)
T 4ay9_X          169 IHNSAFNG--TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS--TYNLKKLPT--L  242 (350)
T ss_dssp             ECTTSSTT--EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT--CTTCCCCCC--T
T ss_pred             CChhhccc--cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc--CCCcCcCCC--c
Confidence            98888766  579999997 5889999988899999999999999999999987665444444333  345788886  6


Q ss_pred             CCCCCCcEEeCCCC
Q psy15002        327 AHLPLLNSLELDGN  340 (357)
Q Consensus       327 ~~~~~L~~L~L~~N  340 (357)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            88999999999865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=1.2e-24  Score=203.22  Aligned_cols=201  Identities=23%  Similarity=0.349  Sum_probs=138.2

Q ss_pred             cEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCC
Q psy15002        116 RHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQN  195 (357)
Q Consensus       116 ~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  195 (357)
                      ++|++++|.++.++.     .+++|++|++++|.+++++.    .+++|++|++++|.++.++...   ++|++|++++|
T Consensus        74 ~~L~l~~~~l~~lp~-----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n  141 (454)
T 1jl5_A           74 HELELNNLGLSSLPE-----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN  141 (454)
T ss_dssp             SEEECTTSCCSCCCS-----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS
T ss_pred             CEEEecCCccccCCC-----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCC
Confidence            666776666666543     22467777777777777653    2366777777777777655422   57777777777


Q ss_pred             CCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc
Q psy15002        196 SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ  275 (357)
Q Consensus       196 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  275 (357)
                      +++.++  .+..+++|++|++++|+++.++. .   .++|++|++++|++++++  .+..+ ++|+.|++++|.+++++.
T Consensus       142 ~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l-~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          142 QLEKLP--ELQNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNL-PFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             CCSSCC--CCTTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTC-TTCCEEECCSSCCSSCCC
T ss_pred             CCCCCc--ccCCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCc--cccCC-CCCCEEECCCCcCCcCCC
Confidence            777765  47777777888887777776532 2   247777888877777753  35566 678888888887777653


Q ss_pred             ccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        276 TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       276 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      .    .++|++|++++|.++.++.  +..+++|+.|++++|++++++..    .++|+.|++++|.+++++.
T Consensus       213 ~----~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~~  274 (454)
T 1jl5_A          213 L----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPE  274 (454)
T ss_dssp             C----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCCC
T ss_pred             C----cCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccCc
Confidence            2    2577888888888876663  67788888888888888877642    3677777777777777543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=3.7e-25  Score=196.80  Aligned_cols=228  Identities=19%  Similarity=0.188  Sum_probs=181.2

Q ss_pred             CCCcccEEEecCCCcceecCcc---cccccccceEEEccCCcCceeChhhh--cCCCCCcEEeccCCccccccC-----C
Q psy15002        111 FGLDIRHLTIHNSSLAVVEESS---LSSIGKKLKRLNLGGNELTRVPQTSL--SKLENLRKLELLHNRIALIEE-----G  180 (357)
Q Consensus       111 ~~~~L~~L~l~~~~l~~~~~~~---~~~l~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-----~  180 (357)
                      ....++.+.+.++.+.......   +... ++|++|++++|.+.+..+..+  .++++|++|++++|.++...+     .
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            3346788888888765322111   1112 469999999999998777767  899999999999999985322     2


Q ss_pred             CCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcc---cC-cccCCCCCCCCEEEccCCcCcccCCC---cc
Q psy15002        181 DFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISA---LH-SNAFQGLDTLEILTIFENKLSLIEPD---SF  253 (357)
Q Consensus       181 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~~  253 (357)
                      ....++|++|++++|++..+++..+..+++|++|++++|++..   +. ...+..+++|++|++++|+++.++..   .+
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            3346899999999999999998899999999999999999764   22 22346789999999999999865432   23


Q ss_pred             ccccccccEEEccCCcCcccCcccccCC---CCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCC
Q psy15002        254 KGLEKKLKRLNLGGNELTRVPQTSLSKL---ENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP  330 (357)
Q Consensus       254 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  330 (357)
                      ..+ ++|+.|++++|.+++..+..+..+   ++|++|++++|+++.++...   .++|+.|++++|++++++.  +..++
T Consensus       221 ~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~--~~~l~  294 (310)
T 4glp_A          221 AAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ--PDELP  294 (310)
T ss_dssp             HHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC--TTSCC
T ss_pred             hcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch--hhhCC
Confidence            455 799999999999999854445554   79999999999999887643   3899999999999999865  57889


Q ss_pred             CCcEEeCCCCccccc
Q psy15002        331 LLNSLELDGNHIHTV  345 (357)
Q Consensus       331 ~L~~L~L~~N~l~~~  345 (357)
                      +|+.|++++|++++.
T Consensus       295 ~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          295 EVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCSCEECSSTTTSCC
T ss_pred             CccEEECcCCCCCCC
Confidence            999999999999763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=2e-24  Score=186.22  Aligned_cols=156  Identities=28%  Similarity=0.439  Sum_probs=80.3

Q ss_pred             ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      +++|++++|.++.+.+..|.++++|++|++++|.++.+++..+. .++|++|++++|+++.+++..|..+++|++|++++
T Consensus        37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  116 (251)
T 3m19_A           37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG  116 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence            44444444444444444444444444444444444444433322 24444444444444444444455555555555555


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL  296 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  296 (357)
                      |+++.+++..|..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++.+++..+..+++|+.|++++|.++.
T Consensus       117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            55555555555555555555555555555554445544 455555555555555555555555566666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=1.2e-23  Score=186.85  Aligned_cols=193  Identities=25%  Similarity=0.406  Sum_probs=102.4

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      ++++|+++++.++.++  .+..+ ++|++|++++|.++.+++  +.++++|++|++++|.++.++ .+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence            3444444444444432  22222 345555555555555544  555555555555555555543 23334555555555


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      +|+++.++.  +..+++|++|++++|.++.+++  +..+++|+.|++++|+++.+.+  +..+ ++|+.|++++|.++.+
T Consensus       116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKISDI  188 (308)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCC
T ss_pred             CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCC-CCCCEEECCCCccCcC
Confidence            555555442  5555555556665555555433  4455556666666655555433  4444 4556666666655555


Q ss_pred             CcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002        274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                      ++  +..+++|++|++++|+++++++  +..+++|+.|++++|+++..+.
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            43  4555556666666666555543  4555566666666665555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=5e-25  Score=200.26  Aligned_cols=251  Identities=18%  Similarity=0.191  Sum_probs=160.3

Q ss_pred             EEecCCCCcCccccccCCC-cccEEEecCCCcceecC----cccccccccceEEEccCCcCceeChhhhcCC-----CCC
Q psy15002         95 LKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEE----SSLSSIGKKLKRLNLGGNELTRVPQTSLSKL-----ENL  164 (357)
Q Consensus        95 L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~----~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l-----~~L  164 (357)
                      .++++|+++...+..+... +|++|++++|.++....    ..+..++.+|++|++++|.++...+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4666777765544444444 47777777777777665    4455553267888888887777766666554     778


Q ss_pred             cEEeccCCccccccCC-----CCCC-CCCCeEECCCCCCeeeCccc----cCC-CCcCceeecccccCcccCccc----C
Q psy15002        165 RKLELLHNRIALIEEG-----DFEG-KALTQLDLSQNSLAVVPSPA----LKS-LNHLLILNLNHNKISALHSNA----F  229 (357)
Q Consensus       165 ~~L~l~~n~l~~~~~~-----~~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~l~~~~~~~----l  229 (357)
                      ++|++++|.++..+..     +... ++|++|++++|+++......    +.. ..+|++|++++|.++......    +
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            8888888877754433     2222 57788888888777666543    233 247888888888777433322    2


Q ss_pred             CCCC-CCCEEEccCCcCcccCCCccc----cccccccEEEccCCcCcccCcc----cccC-CCCCcEEEccCCcCceeCc
Q psy15002        230 QGLD-TLEILTIFENKLSLIEPDSFK----GLEKKLKRLNLGGNELTRVPQT----SLSK-LENLRKLELLHNRIALIEE  299 (357)
Q Consensus       230 ~~l~-~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~----~~~~-l~~L~~L~l~~n~l~~~~~  299 (357)
                      ...+ +|+.|++++|+++...+..+.    ..+++|+.|++++|.++.....    .+.. .++|++|++++|.++..+.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            3343 788888888877766543332    2213788888888877763221    2322 3578888888888777654


Q ss_pred             ----CcCCCCCCCCEeecCCCcCcccCcc-------cCCCCCCCcEEeCCCCccccc
Q psy15002        300 ----GDFEGLHNLDSLVLAHNQLRTIPPR-------VFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       300 ----~~~~~~~~L~~L~L~~n~l~~~~~~-------~~~~~~~L~~L~L~~N~l~~~  345 (357)
                          ..+..+++|+.|++++|.+..+...       .+..+++|+.||+++|++.+.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                2345567788888888875544432       355667788888888877665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.5e-23  Score=174.06  Aligned_cols=130  Identities=29%  Similarity=0.445  Sum_probs=73.1

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL  216 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  216 (357)
                      ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. .++|++|++++|+++.+++..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            3466677777776666666666667777777776666666554432 255555555555555555444555555555555


Q ss_pred             ccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCC
Q psy15002        217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN  268 (357)
Q Consensus       217 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  268 (357)
                      ++|+++.+++..+..+++|+.|++++|+++.+++..+..+ ++|+.|++++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N  158 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDN  158 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-CCccEEEecCC
Confidence            5555555544445555555555555555554444434443 44555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.90  E-value=1.7e-23  Score=190.06  Aligned_cols=191  Identities=25%  Similarity=0.328  Sum_probs=146.0

Q ss_pred             ccccccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEE
Q psy15002         40 LLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLT  119 (357)
Q Consensus        40 ~~~~~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~  119 (357)
                      .+.+...||.     .|.|...    .++|...+++.+|                            .....  .++.|+
T Consensus         5 ~~~~~~~Cp~-----~C~C~~~----~l~c~~~~l~~iP----------------------------~~~~~--~l~~L~   45 (361)
T 2xot_A            5 SGRSVVSCPA-----NCLCASN----ILSCSKQQLPNVP----------------------------QSLPS--YTALLD   45 (361)
T ss_dssp             --CCCTTCCT-----TCEEETT----EEECCSSCCSSCC----------------------------SSCCT--TCSEEE
T ss_pred             cCCcCCCCCC-----CCEECCC----EEEeCCCCcCccC----------------------------ccCCC--CCCEEE
Confidence            3455678998     6999743    6777766555444                            32221  356666


Q ss_pred             ecCCCcceecCcccc-cccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCC
Q psy15002        120 IHNSSLAVVEESSLS-SIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSL  197 (357)
Q Consensus       120 l~~~~l~~~~~~~~~-~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l  197 (357)
                      +++|.++.+....+. .+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+.. ++|++|++++|++
T Consensus        46 Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           46 LSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI  124 (361)
T ss_dssp             CCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence            666666666666665 44 67999999999999999888999999999999999999888876554 8899999999999


Q ss_pred             eeeCccccCCCCcCceeecccccCcccCcccC---CCCCCCCEEEccCCcCcccCCCcccccccc--ccEEEccCCcCc
Q psy15002        198 AVVPSPALKSLNHLLILNLNHNKISALHSNAF---QGLDTLEILTIFENKLSLIEPDSFKGLEKK--LKRLNLGGNELT  271 (357)
Q Consensus       198 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--L~~L~l~~n~l~  271 (357)
                      ..+.+..|..+++|+.|++++|+++.++...|   ..+++|+.|++++|+++.++...+..+ +.  ++.|++++|.+.
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l-~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL-PAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS-CHHHHTTEECCSSCEE
T ss_pred             cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc-cHhhcceEEecCCCcc
Confidence            99888888889999999999999988877776   568889999999999888876666665 33  477888888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.90  E-value=9.8e-22  Score=180.12  Aligned_cols=248  Identities=16%  Similarity=0.263  Sum_probs=223.2

Q ss_pred             EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002         94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR  173 (357)
Q Consensus        94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (357)
                      .+.+. +.++.|+..+|.+.+|+.+.+.++ ++.+...+|.+.  +|+.+.+.. .++.+...+|.++++|+.+++.+|.
T Consensus       117 ~i~ip-~~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~  191 (401)
T 4fdw_A          117 EIILP-NSVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK  191 (401)
T ss_dssp             EEECC-TTCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC
T ss_pred             EEEEC-CccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc
Confidence            34443 467888999998889999999877 999999999984  599999996 7999999999999999999999999


Q ss_pred             cccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcc
Q psy15002        174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF  253 (357)
Q Consensus       174 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (357)
                      ++.++.+.|...+|+.+.+.. .++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.++.+...+|
T Consensus       192 l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF  267 (401)
T 4fdw_A          192 ITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAF  267 (401)
T ss_dssp             CSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTT
T ss_pred             ceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHh
Confidence            999999999999999999984 599999999999999999999875 78888899988 89999999 456889999999


Q ss_pred             ccccccccEEEccCCcCc-----ccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCC
Q psy15002        254 KGLEKKLKRLNLGGNELT-----RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAH  328 (357)
Q Consensus       254 ~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  328 (357)
                      ..+ ++|+.+++.+|.+.     .++..+|..+++|+.+.+. +.++.++..+|.++++|+.+++..| ++.+...+|.+
T Consensus       268 ~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~  344 (401)
T 4fdw_A          268 YYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN  344 (401)
T ss_dssp             TTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred             hCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence            988 89999999988776     6888899999999999999 5599999999999999999999655 99999999999


Q ss_pred             CCCCcEEeCCCCcccccCcccccCcc
Q psy15002        329 LPLLNSLELDGNHIHTVDPAAFSGLE  354 (357)
Q Consensus       329 ~~~L~~L~L~~N~l~~~~~~~~~~l~  354 (357)
                      + +|+.+++.+|.+..+.+..|.+++
T Consensus       345 ~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          345 T-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             S-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             C-CCCEEEEcCCCCcccccccccCCC
Confidence            9 999999999999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=9.2e-23  Score=170.64  Aligned_cols=170  Identities=27%  Similarity=0.331  Sum_probs=96.3

Q ss_pred             eEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecccc
Q psy15002        141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN  219 (357)
Q Consensus       141 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  219 (357)
                      +.++.+++.++.++..   -.++|++|++++|.++.+++..+ ..++|++|++++|+++.+++..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            4556666666666543   23456666666666666655544 2356666666666666655555555666666666666


Q ss_pred             cCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc
Q psy15002        220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE  299 (357)
Q Consensus       220 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  299 (357)
                      +++.+++..+..+++|+.|++++|+++.+++..|..+ ++|+.|++++|.++++++..+..+++|++|++++|.+..   
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            6665555555555666666666666655555445444 455666666665555555445555555555555554332   


Q ss_pred             CcCCCCCCCCEeecCCCcCccc
Q psy15002        300 GDFEGLHNLDSLVLAHNQLRTI  321 (357)
Q Consensus       300 ~~~~~~~~L~~L~L~~n~l~~~  321 (357)
                          .+++|+.|+++.|++++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTT
T ss_pred             ----CCCCHHHHHHHHHhCCce
Confidence                234555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.89  E-value=6.2e-23  Score=173.12  Aligned_cols=163  Identities=23%  Similarity=0.422  Sum_probs=108.4

Q ss_pred             ccCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCC
Q psy15002         44 VQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNS  123 (357)
Q Consensus        44 ~~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~  123 (357)
                      +..||.     .|.|...    .+.|.+.+++++|                            ....  .+++.|++++|
T Consensus         2 ~~~CP~-----~C~C~~~----~v~c~~~~l~~iP----------------------------~~l~--~~l~~L~l~~n   42 (220)
T 2v9t_B            2 SLHCPA-----ACTCSNN----IVDCRGKGLTEIP----------------------------TNLP--ETITEIRLEQN   42 (220)
T ss_dssp             CCCSCT-----TSEEETT----EEECTTSCCSSCC----------------------------SSCC--TTCCEEECCSS
T ss_pred             CCCCCC-----CCEECCC----EEEcCCCCcCcCC----------------------------CccC--cCCCEEECCCC
Confidence            457998     6999754    7778766655544                            2221  24555555555


Q ss_pred             CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCc
Q psy15002        124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPS  202 (357)
Q Consensus       124 ~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~  202 (357)
                      .++.+++..|..+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.+++..|. +++|++|++++|+++.+++
T Consensus        43 ~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~  121 (220)
T 2v9t_B           43 TIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV  121 (220)
T ss_dssp             CCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence            5555555555555 4577777777777777666777777777777777777777766554 3667777777777766666


Q ss_pred             cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002        203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS  246 (357)
Q Consensus       203 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  246 (357)
                      ..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus       122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66666677777777777776666666666666777777666653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=5.9e-23  Score=182.56  Aligned_cols=225  Identities=19%  Similarity=0.137  Sum_probs=177.1

Q ss_pred             ceEEEEEecCCCCcCcccc----ccCCCcccEEEecCCCcceecCccc--ccccccceEEEccCCcCceeCh----hhhc
Q psy15002         90 LIIFYLKLRHNNLPKLTGF----IFFGLDIRHLTIHNSSLAVVEESSL--SSIGKKLKRLNLGGNELTRVPQ----TSLS  159 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~----~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~~L~~L~ls~n~l~~~~~----~~~~  159 (357)
                      ..++.+.+.+..++.-...    .....+|++|++++|.+....+..+  ..+ ++|++|++++|.++...+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhh
Confidence            4567888888877532111    1122369999999999998877776  555 679999999999986322    3456


Q ss_pred             CCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCee---eCc-cccCCCCcCceeecccccCcccCcc---cCCC
Q psy15002        160 KLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAV---VPS-PALKSLNHLLILNLNHNKISALHSN---AFQG  231 (357)
Q Consensus       160 ~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~  231 (357)
                      .+++|++|++++|.++.+++..+ ..++|++|++++|++..   ++. ..+..+++|++|++++|+++.++..   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            79999999999999998886655 45999999999999764   332 2346789999999999999765332   3467


Q ss_pred             CCCCCEEEccCCcCcccCCCcccccc--ccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCC
Q psy15002        232 LDTLEILTIFENKLSLIEPDSFKGLE--KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD  309 (357)
Q Consensus       232 l~~L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  309 (357)
                      +++|++|++++|+++...+..+..+.  ++|+.|++++|+++.++.. +.  ++|++|++++|++++++.  +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-LP--AKLRVLDLSSNRLNRAPQ--PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-CC--SCCSCEECCSCCCCSCCC--TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-hc--CCCCEEECCCCcCCCCch--hhhCCCcc
Confidence            79999999999999998665555542  6999999999999988754 33  799999999999999854  56789999


Q ss_pred             EeecCCCcCcc
Q psy15002        310 SLVLAHNQLRT  320 (357)
Q Consensus       310 ~L~L~~n~l~~  320 (357)
                      .|++++|+++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999999874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.89  E-value=1.2e-22  Score=193.35  Aligned_cols=177  Identities=23%  Similarity=0.349  Sum_probs=81.8

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      +++.|++++|.++.++...+    ++|++|++++|.++.++    ..+++|++|++++|.++.+|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence            45555555555555443221    34555555555555544    234555555555555555544 221  55555555


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      +|.++.++.    .+++|+.|++++|.++.++.    .+++|+.|++++|+++.++.  +.   ++|+.|++++|.++.+
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLLESL  195 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCSSC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCCCch
Confidence            555555443    34455555555555544422    23455555555555544332  22   3455555555555544


Q ss_pred             CcccccCCCCC-------cEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        274 PQTSLSKLENL-------RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       274 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      +.  +..  +|       +.|++++|.++.+|...+ .+++|+.|++++|+++
T Consensus       196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          196 PA--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CC--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCC
T ss_pred             hh--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCC
Confidence            43  221  33       444444444444443222 2444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.88  E-value=1.6e-22  Score=183.56  Aligned_cols=174  Identities=27%  Similarity=0.383  Sum_probs=85.0

Q ss_pred             eEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC--CCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF--EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       141 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      +.++++++.++.++...   .+.+++|++++|.++.++...+  .+++|++|++++|+++.+++..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            34555555555554321   1235555555555555554444  235555555555555555544455555555555555


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      |++..+++..|.++++|+.|+|++|+++.+.+..                         +..+++|+.|++++|.++.++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------------------------~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-------------------------FEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------------------------TTTCTTCCEEECCSSCCCSCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH-------------------------hCCcccCCEEECCCCcCCeeC
Confidence            5555444444444455555555555554444444                         444445555555555555444


Q ss_pred             cCcC---CCCCCCCEeecCCCcCcccCcccCCCCCC--CcEEeCCCCcc
Q psy15002        299 EGDF---EGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHI  342 (357)
Q Consensus       299 ~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~N~l  342 (357)
                      ...|   ..+++|+.|+|++|+|+.++...+..++.  ++.|+|++|+|
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            4433   23455555555555555555444444443  24455555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.88  E-value=4.5e-22  Score=175.10  Aligned_cols=192  Identities=28%  Similarity=0.345  Sum_probs=147.2

Q ss_pred             EEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCC
Q psy15002        117 HLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS  196 (357)
Q Consensus       117 ~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  196 (357)
                      .+.+..+.+..+..  +..+ ++|++|++++|.+..++.  +..+++|++|++++|.++.+++ +..+++|++|++++|.
T Consensus        28 ~~~l~~~~~~~~~~--~~~l-~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSEEC--HHHH-HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCcccccc--hhhc-CcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence            33444555544322  1233 568999999998888853  7888999999999999888877 6666888899999888


Q ss_pred             CeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcc
Q psy15002        197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT  276 (357)
Q Consensus       197 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  276 (357)
                      ++.++.  +..+++|++|++++|++..+  ..+..+++|+.|++++|+++.+  ..+..+ ++|+.|++++|.++.+++ 
T Consensus       102 l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~N~l~~~~~-  173 (291)
T 1h6t_A          102 VKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIVP-  173 (291)
T ss_dssp             CCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCGG-
T ss_pred             CCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccC-CCCCEEEccCCccccchh-
Confidence            887653  77888888888888888876  3467788888888888888876  456666 788888888888888765 


Q ss_pred             cccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002        277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRV  325 (357)
Q Consensus       277 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  325 (357)
                       +..+++|++|++++|.++.++.  +..+++|+.|++++|+++..+...
T Consensus       174 -l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~  219 (291)
T 1h6t_A          174 -LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH  219 (291)
T ss_dssp             -GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred             -hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCcccc
Confidence             7788888888888888888753  677888888888888887766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.1e-23  Score=191.36  Aligned_cols=231  Identities=21%  Similarity=0.259  Sum_probs=178.6

Q ss_pred             EEEecCCCcceecCcccccccccceEEEccCCcCceeCh----hhhcCCC-CCcEEeccCCccccccCCCC-CC-----C
Q psy15002        117 HLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQ----TSLSKLE-NLRKLELLHNRIALIEEGDF-EG-----K  185 (357)
Q Consensus       117 ~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~-~~-----~  185 (357)
                      ...++.|.++...+..+.. .++|++|++++|.++..+.    ..+.+++ +|++|++++|.++......+ ..     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            3567788887765554443 3669999999999999987    7788898 99999999999986543322 22     7


Q ss_pred             CCCeEECCCCCCeeeCccc----cCCC-CcCceeecccccCcccCcccC----CC-CCCCCEEEccCCcCcccCCCcc--
Q psy15002        186 ALTQLDLSQNSLAVVPSPA----LKSL-NHLLILNLNHNKISALHSNAF----QG-LDTLEILTIFENKLSLIEPDSF--  253 (357)
Q Consensus       186 ~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~~~--  253 (357)
                      +|++|++++|.++......    +..+ ++|++|++++|.++......+    .. .++|++|++++|+++......+  
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            8999999999998877653    4444 799999999999988766543    34 3699999999999986544333  


Q ss_pred             --ccccccccEEEccCCcCcccCccc----ccCC-CCCcEEEccCCcCceeCcC----cCCC-CCCCCEeecCCCcCccc
Q psy15002        254 --KGLEKKLKRLNLGGNELTRVPQTS----LSKL-ENLRKLELLHNRIALIEEG----DFEG-LHNLDSLVLAHNQLRTI  321 (357)
Q Consensus       254 --~~~~~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~----~~~~-~~~L~~L~L~~n~l~~~  321 (357)
                        ...+++|+.|++++|.++...+..    +..+ ++|++|++++|.++.....    .+.. .++|+.|++++|++++.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence              333248999999999998877543    3445 5999999999999984332    2323 46999999999999987


Q ss_pred             Cc----ccCCCCCCCcEEeCCCCcccccCcc
Q psy15002        322 PP----RVFAHLPLLNSLELDGNHIHTVDPA  348 (357)
Q Consensus       322 ~~----~~~~~~~~L~~L~L~~N~l~~~~~~  348 (357)
                      +.    ..+..+++|+.|++++|.+.++.++
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~  271 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKE  271 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence            65    3457789999999999997777655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=1.8e-21  Score=164.14  Aligned_cols=129  Identities=22%  Similarity=0.425  Sum_probs=60.3

Q ss_pred             cEEEecCCCcceecC-cccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECC
Q psy15002        116 RHLTIHNSSLAVVEE-SSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLS  193 (357)
Q Consensus       116 ~~L~l~~~~l~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~  193 (357)
                      ++|++++|.++.+.+ ..|..+ ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..+. +++|++|+++
T Consensus        35 ~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           35 AELRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             SEEECCSSCCCEECCCCCGGGC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CEEEcCCCcCCccCchhhhccC-CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            444444444444422 223333 3455555555555555555555555555555555555544443322 2444444444


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcC
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL  245 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  245 (357)
                      +|+++.+++..|..+++|++|++++|+++.+.+..|..+++|+.|++++|.+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            4444444444444444444444444444444444444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=3.8e-24  Score=196.12  Aligned_cols=231  Identities=20%  Similarity=0.234  Sum_probs=131.6

Q ss_pred             cccEEEecCCCcceecCcc----cccccccceEEEccCCcCceeC---hhh-------hcCCCCCcEEeccCCcccc---
Q psy15002        114 DIRHLTIHNSSLAVVEESS----LSSIGKKLKRLNLGGNELTRVP---QTS-------LSKLENLRKLELLHNRIAL---  176 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~----~~~l~~~L~~L~ls~n~l~~~~---~~~-------~~~l~~L~~L~l~~n~l~~---  176 (357)
                      +|++|++++|.++......    +..+ ++|++|++++|.+..+.   +..       +..+++|++|++++|.++.   
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            4555555555444432221    2222 45666666665433221   111       2556666666666666654   


Q ss_pred             --ccCCCCCCCCCCeEECCCCCCeeeCccccC----CC---------CcCceeecccccCcccC-c---ccCCCCCCCCE
Q psy15002        177 --IEEGDFEGKALTQLDLSQNSLAVVPSPALK----SL---------NHLLILNLNHNKISALH-S---NAFQGLDTLEI  237 (357)
Q Consensus       177 --~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~~~-~---~~l~~l~~L~~  237 (357)
                        ++..+...++|++|++++|.++......+.    .+         ++|++|++++|+++... +   ..+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence              444444456666666666666543322222    22         67777777777765221 1   23445667777


Q ss_pred             EEccCCcCcc-----cCCCccccccccccEEEccCCcCc----ccCcccccCCCCCcEEEccCCcCceeC----cCcC--
Q psy15002        238 LTIFENKLSL-----IEPDSFKGLEKKLKRLNLGGNELT----RVPQTSLSKLENLRKLELLHNRIALIE----EGDF--  302 (357)
Q Consensus       238 L~L~~n~l~~-----~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~--  302 (357)
                      |++++|+++.     +.+..+..+ ++|+.|++++|.++    ...+..+..+++|++|++++|.++...    +..+  
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            7777777662     222244454 67777777777774    212234666777777777777776642    1233  


Q ss_pred             CCCCCCCEeecCCCcCcc-----cCcccCCCCCCCcEEeCCCCcccccC
Q psy15002        303 EGLHNLDSLVLAHNQLRT-----IPPRVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       303 ~~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                      ..+++|+.|+|++|.++.     ++...+.++++|+.|++++|++++..
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            236777778888777776     55544455677778888888777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=3.8e-21  Score=162.11  Aligned_cols=150  Identities=29%  Similarity=0.479  Sum_probs=81.0

Q ss_pred             EEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcC
Q psy15002        166 KLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKL  245 (357)
Q Consensus       166 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  245 (357)
                      .++++++.++.+|..+.  +++++|++++|+++.+++..|..+++|+.|++++|+++.+.+..|.++++|+.|++++|++
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            44444445554444332  3455555555555555554555555555555555555555555555555555555555555


Q ss_pred             cccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcC
Q psy15002        246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL  318 (357)
Q Consensus       246 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  318 (357)
                      +.+++..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+
T Consensus        93 ~~l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           93 TELPKSLFEGL-FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CccCHhHccCC-CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            55544444444 4555555555555555555555555555555555555555555555555555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=5.5e-24  Score=199.56  Aligned_cols=256  Identities=20%  Similarity=0.175  Sum_probs=184.2

Q ss_pred             ceEEEEEecCCCCcCc-----cccccCCCcccEEEecCCCcceecCcccccccc----cceEEEccCCcCceeC----hh
Q psy15002         90 LIIFYLKLRHNNLPKL-----TGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGK----KLKRLNLGGNELTRVP----QT  156 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l-----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~----~L~~L~ls~n~l~~~~----~~  156 (357)
                      ..+++|++++|.++..     +.......+|++|++++|.+.......+.....    +|++|++++|.++...    +.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            4577999999998743     443344458999999999887654433332212    6999999999988533    56


Q ss_pred             hhcCCCCCcEEeccCCccccc-----cCCCCC-CCCCCeEECCCCCCeeeC----ccccCCCCcCceeecccccCcccCc
Q psy15002        157 SLSKLENLRKLELLHNRIALI-----EEGDFE-GKALTQLDLSQNSLAVVP----SPALKSLNHLLILNLNHNKISALHS  226 (357)
Q Consensus       157 ~~~~l~~L~~L~l~~n~l~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~  226 (357)
                      .+.++++|++|++++|.++..     ...+.. .++|++|++++|+++...    +..+..+++|++|++++|.+.....
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            678899999999999998632     222222 367999999999888644    3345667899999999998876544


Q ss_pred             ccCC-----CCCCCCEEEccCCcCcccC----CCccccccccccEEEccCCcCcccC-----cccccCCCCCcEEEccCC
Q psy15002        227 NAFQ-----GLDTLEILTIFENKLSLIE----PDSFKGLEKKLKRLNLGGNELTRVP-----QTSLSKLENLRKLELLHN  292 (357)
Q Consensus       227 ~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n  292 (357)
                      ..+.     ..++|+.|++++|.++...    +..+... ++|+.|++++|.++...     +..+..+++|++|++++|
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            3332     3568999999999887642    3344445 78999999999887643     223346789999999999


Q ss_pred             cCceeC----cCcCCCCCCCCEeecCCCcCcccCc-----ccCCCCCCCcEEeCCCCcccccC
Q psy15002        293 RIALIE----EGDFEGLHNLDSLVLAHNQLRTIPP-----RVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       293 ~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~-----~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                      .++...    +..+..+++|+.|++++|.+++...     ......++|+.|++++|.+++..
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            988742    2345568899999999999875433     22234468999999999988764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=1.8e-23  Score=196.06  Aligned_cols=260  Identities=21%  Similarity=0.201  Sum_probs=191.3

Q ss_pred             ceEEEEEecCCCCcCcccc-ccCCC-----cccEEEecCCCcceec----CcccccccccceEEEccCCcCceeChhhhc
Q psy15002         90 LIIFYLKLRHNNLPKLTGF-IFFGL-----DIRHLTIHNSSLAVVE----ESSLSSIGKKLKRLNLGGNELTRVPQTSLS  159 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~-~~~~~-----~L~~L~l~~~~l~~~~----~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~  159 (357)
                      ..+++|++++|.+...... .+...     +|++|++++|.++...    +..+..+ ++|++|++++|.++......+.
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~  134 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLC  134 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC-CceeEEECCCCcCchHHHHHHH
Confidence            5688999999999764332 22211     5999999999988533    4555666 5799999999998865444332


Q ss_pred             -----CCCCCcEEeccCCccccc-----cCCCCCCCCCCeEECCCCCCeeeCccccC-----CCCcCceeecccccCccc
Q psy15002        160 -----KLENLRKLELLHNRIALI-----EEGDFEGKALTQLDLSQNSLAVVPSPALK-----SLNHLLILNLNHNKISAL  224 (357)
Q Consensus       160 -----~l~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~  224 (357)
                           ..++|++|++++|.++..     +..+...++|++|++++|.+.......+.     ..++|++|++++|.++..
T Consensus       135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence                 356899999999998753     33333458999999999998765443332     356999999999998864


Q ss_pred             C----cccCCCCCCCCEEEccCCcCcccCCCc-----cccccccccEEEccCCcCcccC----cccccCCCCCcEEEccC
Q psy15002        225 H----SNAFQGLDTLEILTIFENKLSLIEPDS-----FKGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLH  291 (357)
Q Consensus       225 ~----~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~  291 (357)
                      .    +..+..+++|+.|++++|+++......     +... ++|+.|++++|.++...    +..+..+++|++|++++
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence            2    445667899999999999987643221     1223 78999999999998742    23466689999999999


Q ss_pred             CcCceeCcCcC-----CCCCCCCEeecCCCcCcccC----cccCCCCCCCcEEeCCCCcccccCccccc
Q psy15002        292 NRIALIEEGDF-----EGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHTVDPAAFS  351 (357)
Q Consensus       292 n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~N~l~~~~~~~~~  351 (357)
                      |.++......+     ...++|+.|++++|.+++..    +..+..+++|+.|++++|.+++..+..+.
T Consensus       294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  362 (461)
T 1z7x_W          294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  362 (461)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence            99876543322     23479999999999998653    23346679999999999999887665443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=4.2e-23  Score=185.56  Aligned_cols=252  Identities=18%  Similarity=0.142  Sum_probs=155.8

Q ss_pred             EEEEEecCCCCcCccccccCC--CcccEEEecCCCcceecCcccccccccceEEEccCCcCcee-ChhhhcCCCCCcEEe
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFG--LDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV-PQTSLSKLENLRKLE  168 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~  168 (357)
                      .+.++++++.+.  +......  .+++.+++.+|.+....+..+ .+ ++|++|++++|.++.. .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhc-cC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            456777776665  2221122  366777777777766655433 23 5677888877776643 334567777788888


Q ss_pred             ccCCccc-cccCCCCCCCCCCeEECCCC-CCeee-CccccCCCCcCceeecccc-cCccc-CcccCCCCC-CCCEEEccC
Q psy15002        169 LLHNRIA-LIEEGDFEGKALTQLDLSQN-SLAVV-PSPALKSLNHLLILNLNHN-KISAL-HSNAFQGLD-TLEILTIFE  242 (357)
Q Consensus       169 l~~n~l~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~L~~  242 (357)
                      +++|.++ ..+..+...++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|+.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            8777776 34444445577888888877 56542 2234566777888888887 76643 234456667 788888888


Q ss_pred             Cc--Ccc-cCCCccccccccccEEEccCCc-CcccCcccccCCCCCcEEEccCCc-CceeCcCcCCCCCCCCEeecCCCc
Q psy15002        243 NK--LSL-IEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAHNQ  317 (357)
Q Consensus       243 n~--l~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~  317 (357)
                      |.  ++. ..+..+..+ ++|+.|++++|. ++......+..+++|++|++++|. +.......+..+++|+.|++++| 
T Consensus       205 ~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             CGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CcccCCHHHHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            73  331 112334444 678888888887 554444456777888888888874 32222224566788888888877 


Q ss_pred             CcccCcccCCCC-CCCcEEeCCCCcccccCcccccC
Q psy15002        318 LRTIPPRVFAHL-PLLNSLELDGNHIHTVDPAAFSG  352 (357)
Q Consensus       318 l~~~~~~~~~~~-~~L~~L~L~~N~l~~~~~~~~~~  352 (357)
                         ++...+..+ ..+..|++++|.++++.+..++.
T Consensus       283 ---i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          283 ---VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             ---SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             ---cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence               333222222 23556667888888877776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=7.4e-21  Score=181.11  Aligned_cols=184  Identities=21%  Similarity=0.309  Sum_probs=136.7

Q ss_pred             eEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002         91 IIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  170 (357)
Q Consensus        91 ~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  170 (357)
                      .++.|++++|.++.+|...+  .+|++|++++|.++.++ .    ..++|++|++++|.++.++.  +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            56788888888888887664  46888888888888766 2    22568888888888888765  444  78888888


Q ss_pred             CCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002        171 HNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEP  250 (357)
Q Consensus       171 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (357)
                      +|.++.+|.   ..++|++|++++|.++.++.    .+++|++|++++|.++.++.  +.  ++|+.|++++|+++.++.
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            888888777   45788888888888887765    46788888888888887654  54  788888888888887654


Q ss_pred             Cccccccccc-------cEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcC
Q psy15002        251 DSFKGLEKKL-------KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF  302 (357)
Q Consensus       251 ~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  302 (357)
                        +..   +|       +.|++++|.++.+|.. +..+++|+.|++++|.+++..+..+
T Consensus       198 --~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          198 --VPV---RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             --CC-----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             --HHH---hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHH
Confidence              332   56       8888888888887754 4458888888888888877555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=7.9e-21  Score=167.14  Aligned_cols=172  Identities=30%  Similarity=0.416  Sum_probs=139.8

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      +++.|++++|.+..++.  +..+ ++|++|++++|.++.+++  +.++++|++|++++|.++.++. +..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred             cccEEEccCCCcccChh--HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence            78889999888887743  4444 679999999999888876  8888999999999998888765 5666889999999


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      +|+++.++  .+..+++|+.|++++|+++.+  ..+..+++|+.|++++|+++.+.+  +..+ ++|+.|++++|.++.+
T Consensus       121 ~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l-~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          121 HNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCBC
T ss_pred             CCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC-CccCEEECCCCcCCCC
Confidence            99888874  577888899999999988877  457788899999999998888755  6666 7899999999988887


Q ss_pred             CcccccCCCCCcEEEccCCcCceeCcC
Q psy15002        274 PQTSLSKLENLRKLELLHNRIALIEEG  300 (357)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~  300 (357)
                      +  .+..+++|+.|++++|.++..+..
T Consensus       194 ~--~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          194 R--ALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             G--GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             h--hhccCCCCCEEECcCCcccCCccc
Confidence            5  377888999999999888776543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=5.8e-21  Score=183.64  Aligned_cols=196  Identities=27%  Similarity=0.332  Sum_probs=148.8

Q ss_pred             ccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCC
Q psy15002        115 IRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQ  194 (357)
Q Consensus       115 L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  194 (357)
                      +..+.+..+.+..+..  +..+ ++|+.|++++|.+..++  .+..+++|+.|+|++|.++.+++ +..+++|+.|++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence            3444455555554432  2233 56888888888888876  37888889999998888888776 55668888888888


Q ss_pred             CCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccC
Q psy15002        195 NSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP  274 (357)
Q Consensus       195 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  274 (357)
                      |.+..++  .+..+++|+.|++++|.+..+  ..+..+++|+.|+|++|+++.+  ..+..+ ++|+.|++++|.++.++
T Consensus        97 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           97 NKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-TKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSC-TTCSEEECCSSCCCCCG
T ss_pred             CCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhccc-CCCCEEECcCCcCCCch
Confidence            8888765  577888888888888888876  3477788888888888888876  456666 78888888888888776


Q ss_pred             cccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCC
Q psy15002        275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFA  327 (357)
Q Consensus       275 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  327 (357)
                      +  +..+++|+.|+|++|.++.++  .+..+++|+.|+|++|++...|...+.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccc
Confidence            5  778888888888888888874  467788888888888888876654433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1.4e-20  Score=158.57  Aligned_cols=153  Identities=29%  Similarity=0.437  Sum_probs=129.3

Q ss_pred             CcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCc-cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccC
Q psy15002        164 LRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFE  242 (357)
Q Consensus       164 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  242 (357)
                      -+.+++++|.++.+|..+.  ..+++|++++|+++.+++ ..|..+++|+.|++++|+++.+++..|.++++|+.|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            3589999999999887664  456899999999988854 5678888999999999999888888888888999999999


Q ss_pred             CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        243 NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       243 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      |+++.+.+..|..+ ++|+.|++++|.++.+++..+..+++|++|++++|+++.+++..|..+++|+.|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGL-ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTC-SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCC-cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99888877778777 78888888888888887777888888888888888888888778888888888888888876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.6e-21  Score=173.43  Aligned_cols=234  Identities=20%  Similarity=0.230  Sum_probs=172.3

Q ss_pred             CcccEEEecCCCcc--eecCcccccccccceEEEccCCcCceeChhhhcC--------CCCCcEEeccCCccccccCCCC
Q psy15002        113 LDIRHLTIHNSSLA--VVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSK--------LENLRKLELLHNRIALIEEGDF  182 (357)
Q Consensus       113 ~~L~~L~l~~~~l~--~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~  182 (357)
                      .+|+.|++++|.+.  ......+.    .++.+.+..+   .++..+|.+        +++|+.|++.+ .++.|++++|
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~----~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYP----NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSG----GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             ccCeEEecCcceeEEecCcccccc----cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            36888888888877  33333322    1344444444   566777877        88888888888 8888888888


Q ss_pred             CC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccc----cCcccCcccCCCCCCCC-EEEccCCc------------
Q psy15002        183 EG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN----KISALHSNAFQGLDTLE-ILTIFENK------------  244 (357)
Q Consensus       183 ~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~l~~l~~L~-~L~L~~n~------------  244 (357)
                      .. ++|+.+++.+|.+..+++.+|..+.++..+....+    ....+...+|..+..|+ .+.+....            
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~  200 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ  200 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence            76 88888888888888888888888777776666552    22333344444444444 33332211            


Q ss_pred             ------------CcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCC-Ee
Q psy15002        245 ------------LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD-SL  311 (357)
Q Consensus       245 ------------l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L  311 (357)
                                  +.......+....++|+.+++++|.++.++..+|..+.+|+++++.+| ++.++..+|.++++|+ .+
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence                        111101111111278999999999999999999999999999999988 9999999999999999 99


Q ss_pred             ecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       312 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      ++.+ .++.+++.+|.+|++|+.+++++|.++.+++.+|.++++|
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            9988 8999999999999999999999999999999999998765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.85  E-value=1.6e-19  Score=165.50  Aligned_cols=244  Identities=16%  Similarity=0.303  Sum_probs=217.8

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..++.+.+..+ ++.++..+|.+.+|+.+.+.+ .++.+...+|.++ .+|+.+++++|.++.++..+|. ..+|+.+.+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c-~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYC-YNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTC-TTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCc-ccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            45788888766 999999999999999999987 7999999999988 6799999999999999999998 589999999


Q ss_pred             cCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCc--
Q psy15002        170 LHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS--  246 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--  246 (357)
                      .. .++.++..+|.. ++|+.+++..+ ++.+...+|.+ .+|+.+.+ .+.+..+...+|.++++|+.+.+.++.+.  
T Consensus       211 p~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             CC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            84 499999999987 79999999974 88999999998 78999999 45688999999999999999999998765  


Q ss_pred             ---ccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002        247 ---LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       247 ---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                         .+...+|.++ ++|+.+++. +.++.+...+|.++.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|.+..++.
T Consensus       287 ~~~~I~~~aF~~c-~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          287 PEAMIHPYCLEGC-PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             TTCEECTTTTTTC-TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             cccEECHHHhhCC-ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence               6888899988 899999999 4599999999999999999999655 999999999999 99999999999999999


Q ss_pred             ccCCCCC-CCcEEeCCCCccccc
Q psy15002        324 RVFAHLP-LLNSLELDGNHIHTV  345 (357)
Q Consensus       324 ~~~~~~~-~L~~L~L~~N~l~~~  345 (357)
                      ..|.+++ .+..+.+..+.+...
T Consensus       363 ~~F~~~~~~l~~l~vp~~~~~~y  385 (401)
T 4fdw_A          363 KVWYGFPDDITVIRVPAESVEKY  385 (401)
T ss_dssp             SSCCCSCTTCCEEEECGGGHHHH
T ss_pred             ccccCCCCCccEEEeCHHHHHHh
Confidence            8888885 789999988865543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=3.5e-20  Score=157.19  Aligned_cols=155  Identities=26%  Similarity=0.350  Sum_probs=125.8

Q ss_pred             CCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEcc
Q psy15002        162 ENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIF  241 (357)
Q Consensus       162 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  241 (357)
                      ..-+.++.+++.++.+|..+.  ++|++|++++|.++.+.+..|..+++|++|++++|++..+++..|..+++|+.|+++
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            346678888888888887665  778888888888888877788888888888888888888877778888888888888


Q ss_pred             CCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002        242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       242 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      +|+++.+++..|..+ ++|+.|++++|.++.++. .+..+++|++|++++|+++.+++..+..+++|+.|++++|.+..
T Consensus        97 ~N~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRL-VHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTC-TTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcc-hhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            888888877777777 788888888888887764 46777888888888888888877777778888888888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=5.7e-20  Score=155.93  Aligned_cols=153  Identities=28%  Similarity=0.385  Sum_probs=128.2

Q ss_pred             ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      -+.++.+++.++.++...   .++|++|++++|.++.+++..+ .+++|++|++++|+++.+++..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            567888898888888642   3789999999999988866554 448899999999999888888888899999999999


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      |+++.+++..|..+++|+.|++++|+++.+ +..+..+ ++|+.|++++|.++.+++..+..+++|+.|++++|.+...
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccccc-CcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999988888888889999999999999877 4455666 7899999999999988887788889999999999987654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=7.6e-22  Score=177.32  Aligned_cols=232  Identities=19%  Similarity=0.205  Sum_probs=181.5

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCccee-cCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVV-EESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..++.|++++|.+...+...+...+|++|++++|.+... .+..+..+ ++|++|++++|.++...+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            567899999999998888877777999999999988754 33445555 6799999999999877777889999999999


Q ss_pred             ccCC-cccc--ccCCCCCCCCCCeEECCCC-CCeee-CccccCCCC-cCceeeccccc--Cc-ccCcccCCCCCCCCEEE
Q psy15002        169 LLHN-RIAL--IEEGDFEGKALTQLDLSQN-SLAVV-PSPALKSLN-HLLILNLNHNK--IS-ALHSNAFQGLDTLEILT  239 (357)
Q Consensus       169 l~~n-~l~~--~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~  239 (357)
                      +++| .++.  ++..+...++|++|++++| .++.. .+..+..++ +|++|++++|.  ++ ...+..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            9999 6773  5555556699999999999 88764 234567788 99999999994  43 22244566789999999


Q ss_pred             ccCCc-CcccCCCccccccccccEEEccCCc-CcccCcccccCCCCCcEEEccCCcCceeCcCcCCCC-CCCCEeecCCC
Q psy15002        240 IFENK-LSLIEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL-HNLDSLVLAHN  316 (357)
Q Consensus       240 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n  316 (357)
                      +++|. ++...+..+..+ ++|+.|++++|. +.......+..+++|+.|++++|    ++...+..+ .++..|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n  303 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCS  303 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCC
T ss_pred             CCCCCcCCHHHHHHHhCC-CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecc
Confidence            99999 666656677777 899999999995 33322235778999999999999    443334333 34788889999


Q ss_pred             cCcccCcccCC
Q psy15002        317 QLRTIPPRVFA  327 (357)
Q Consensus       317 ~l~~~~~~~~~  327 (357)
                      ++++..+..+.
T Consensus       304 ~l~~~~~~~~~  314 (336)
T 2ast_B          304 HFTTIARPTIG  314 (336)
T ss_dssp             CSCCTTCSSCS
T ss_pred             cCccccCCccc
Confidence            99987775544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=8.6e-21  Score=182.48  Aligned_cols=194  Identities=27%  Similarity=0.348  Sum_probs=154.7

Q ss_pred             EEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc
Q psy15002         94 YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR  173 (357)
Q Consensus        94 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  173 (357)
                      .+.+..+.+..+... -...+|+.|++++|.+..++  .+..+ ++|+.|++++|.+..+++  +..+++|++|+|++|.
T Consensus        25 ~l~l~~~~i~~~~~~-~~L~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           25 KDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHTTCSCTTSEECH-HHHTTCCCCBCTTCCCCCCT--TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHhccCCCcccccch-hcCCCCCEEECcCCCCCCCh--HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            344555666654432 12227888999999888875  35555 679999999999998876  8899999999999999


Q ss_pred             cccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCcc
Q psy15002        174 IALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF  253 (357)
Q Consensus       174 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  253 (357)
                      ++.++ .+..+++|++|++++|.+..++  .+..+++|+.|++++|.+..+  ..+..+++|+.|+|++|+++.+.+  +
T Consensus        99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A           99 IKDLS-SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             CCCCT-TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCCCh-hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence            98876 5666789999999999998874  478889999999999999887  467888999999999999988765  6


Q ss_pred             ccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCC
Q psy15002        254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE  303 (357)
Q Consensus       254 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  303 (357)
                      ..+ ++|+.|++++|.++.++  .+..+++|+.|++++|.+...+...+.
T Consensus       172 ~~l-~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          172 AGL-TKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             TTC-TTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             ccC-CCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccc
Confidence            666 78999999999998874  478889999999999998887654443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=3.1e-20  Score=166.38  Aligned_cols=237  Identities=15%  Similarity=0.149  Sum_probs=181.2

Q ss_pred             ceEEEEEecCCCCc--CccccccCCCcccEEEecCCCcceecCccccc--------ccccceEEEccCCcCceeChhhhc
Q psy15002         90 LIIFYLKLRHNNLP--KLTGFIFFGLDIRHLTIHNSSLAVVEESSLSS--------IGKKLKRLNLGGNELTRVPQTSLS  159 (357)
Q Consensus        90 ~~l~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------l~~~L~~L~ls~n~l~~~~~~~~~  159 (357)
                      ..++.|+|++|.+.  ..+...+..  ++.+.+..+   .++..+|.+        + ++|+.|++.+ .++.|+..+|.
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~---~I~~~aF~~~~~~~~~g~-~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMAN---FVPAYAFSNVVNGVTKGK-QTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTT---EECTTTTEEEETTEEEEC-TTCCC-CBCT-TCCEECTTTTT
T ss_pred             ccCeEEecCcceeEEecCccccccc--ccccccccc---ccCHHHhccccccccccc-CCCcEEECCc-cccchhHHHhh
Confidence            56889999999998  333333332  344444444   667777777        6 6799999999 89999999999


Q ss_pred             CCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCC----CCeeeCccccCCCCcCc-eeec-----------------
Q psy15002        160 KLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQN----SLAVVPSPALKSLNHLL-ILNL-----------------  216 (357)
Q Consensus       160 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n----~l~~~~~~~~~~l~~L~-~L~l-----------------  216 (357)
                      ++++|+.|++++|.++.+++.+|.. .++..+....+    ....+...+|..+..|+ .+.+                 
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP  201 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence            9999999999999999999988876 45555555442    12233344454444444 2222                 


Q ss_pred             --------ccccCcccCcccC-CCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCc-E
Q psy15002        217 --------NHNKISALHSNAF-QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR-K  286 (357)
Q Consensus       217 --------~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~  286 (357)
                              .++ +.......+ ..+++|+.+++++|+++.++..+|.++ .+|+.+++.+| ++.++..+|.++++|+ .
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEE
Confidence                    221 111000111 126899999999999999999999998 89999999998 9999999999999999 9


Q ss_pred             EEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeC
Q psy15002        287 LELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL  337 (357)
Q Consensus       287 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  337 (357)
                      +++.+ .++.++..+|.++++|+.+++++|+++.++..+|.++++|+.+..
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99998 899999999999999999999999999999999999999998864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.83  E-value=4.6e-21  Score=166.12  Aligned_cols=173  Identities=25%  Similarity=0.314  Sum_probs=148.7

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      .+++.++++++.++.++  .+..+++|++|++++|.++.++ .+...++|++|++++|+++.+++  +..+++|++|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            45888899999999887  4788999999999999999887 56666999999999999999886  8899999999999


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      +|+++.++.  +.. ++|+.|++++|+++.++  .+..+ ++|+.|++++|.+++++  .+..+++|++|++++|.++++
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l-~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHL-KNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTC-TTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCc-ccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence            999988754  333 89999999999998863  46666 79999999999999885  478889999999999999988


Q ss_pred             CcCcCCCCCCCCEeecCCCcCcccCccc
Q psy15002        298 EEGDFEGLHNLDSLVLAHNQLRTIPPRV  325 (357)
Q Consensus       298 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~  325 (357)
                        ..+..+++|+.|++++|++...+...
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred             --HHhccCCCCCEEeCCCCcccCCcccc
Confidence              46788999999999999998876543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.82  E-value=3e-20  Score=160.92  Aligned_cols=171  Identities=24%  Similarity=0.304  Sum_probs=148.5

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      +++.+.++++.++.+.  .+..+ ++|++|++++|.++.++  .+..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            5677788888888776  34555 67999999999999987  48999999999999999999988 6667999999999


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      +|+++.++..  .. ++|+.|++++|+++.++  .+..+++|+.|++++|++++++  .+..+ ++|+.|++++|.++++
T Consensus        94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l-~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFL-SKLEVLDLHGNEITNT  165 (263)
T ss_dssp             SSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGC-TTCCEEECTTSCCCBC
T ss_pred             CCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccC-CCCCEEECCCCcCcch
Confidence            9999998753  33 89999999999999873  5889999999999999999874  56677 8999999999999998


Q ss_pred             CcccccCCCCCcEEEccCCcCceeCcC
Q psy15002        274 PQTSLSKLENLRKLELLHNRIALIEEG  300 (357)
Q Consensus       274 ~~~~~~~l~~L~~L~l~~n~l~~~~~~  300 (357)
                        ..+..+++|+.|++++|.++..+..
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             --HHhccCCCCCEEeCCCCcccCCccc
Confidence              4588999999999999999887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=1.6e-21  Score=178.76  Aligned_cols=244  Identities=18%  Similarity=0.130  Sum_probs=180.4

Q ss_pred             ChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccc----c-CCCcccEEEecCCCcceecCc---cc-------cccc
Q psy15002         73 DNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFI----F-FGLDIRHLTIHNSSLAVVEES---SL-------SSIG  137 (357)
Q Consensus        73 ~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~----~-~~~~L~~L~l~~~~l~~~~~~---~~-------~~l~  137 (357)
                      ++..+...+...     ..+++|++++|.+.......    + ...+|++|++++|.+..+...   .+       ..+ 
T Consensus        20 ~~~~l~~~l~~~-----~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-   93 (386)
T 2ca6_A           20 DEKSVFAVLLED-----DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-   93 (386)
T ss_dssp             HHHTTSHHHHHC-----SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhcC-----CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-
Confidence            344444444332     45889999999998654322    3 344899999999866544321   22       333 


Q ss_pred             ccceEEEccCCcCce----eChhhhcCCCCCcEEeccCCcccccc-----CCCCCC---------CCCCeEECCCCCCee
Q psy15002        138 KKLKRLNLGGNELTR----VPQTSLSKLENLRKLELLHNRIALIE-----EGDFEG---------KALTQLDLSQNSLAV  199 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~---------~~L~~L~l~~n~l~~  199 (357)
                      ++|++|++++|.++.    ..+..+.++++|++|++++|.++...     ..+...         ++|++|++++|+++.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            679999999999987    23446789999999999999987332     222222         799999999999973


Q ss_pred             eCc----cccCCCCcCceeecccccCcc-----cCcccCCCCCCCCEEEccCCcCc----ccCCCccccccccccEEEcc
Q psy15002        200 VPS----PALKSLNHLLILNLNHNKISA-----LHSNAFQGLDTLEILTIFENKLS----LIEPDSFKGLEKKLKRLNLG  266 (357)
Q Consensus       200 ~~~----~~~~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~L~~L~l~  266 (357)
                      ...    ..+..+++|++|++++|+++.     +.+..+..+++|+.|++++|.++    ...+..+..+ ++|+.|+++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L~~L~L~  252 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLN  252 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTCCEEECT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-CCcCEEECC
Confidence            322    356678899999999999873     33336778899999999999995    2224456666 799999999


Q ss_pred             CCcCcccC----cccc--cCCCCCcEEEccCCcCce-----eCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002        267 GNELTRVP----QTSL--SKLENLRKLELLHNRIAL-----IEEGDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       267 ~n~l~~~~----~~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                      +|.++...    +..+  ..+++|++|++++|.++.     ++.....++++|+.|++++|++++..+
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            99998752    2334  348999999999999998     555333568999999999999997763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=1.7e-19  Score=149.42  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=34.1

Q ss_pred             CCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEc
Q psy15002        161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTI  240 (357)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  240 (357)
                      +++|++|++++|.++.++ .+...++|++|++++|.+..++  .+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            334444444444444333 2222233333333333322221  2334444444444444444433333444444444444


Q ss_pred             cCCcCcc
Q psy15002        241 FENKLSL  247 (357)
Q Consensus       241 ~~n~l~~  247 (357)
                      ++|+++.
T Consensus       120 s~n~i~~  126 (197)
T 4ezg_A          120 SHSAHDD  126 (197)
T ss_dssp             CSSBCBG
T ss_pred             cCCccCc
Confidence            4444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=2.6e-19  Score=148.24  Aligned_cols=152  Identities=20%  Similarity=0.265  Sum_probs=132.8

Q ss_pred             CCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEE
Q psy15002        184 GKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL  263 (357)
Q Consensus       184 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  263 (357)
                      +++|++|++++|.+..++  .+..+++|++|++++|.+..+  ..+..+++|++|++++|+++...+..+..+ ++|+.|
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTC-TTCCEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCC-CCCCEE
Confidence            378999999999999877  588899999999999987765  368889999999999999998767788888 899999


Q ss_pred             EccCCcCcccCcccccCCCCCcEEEccCCc-CceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcc
Q psy15002        264 NLGGNELTRVPQTSLSKLENLRKLELLHNR-IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       264 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l  342 (357)
                      ++++|.++...+..+..+++|++|++++|. ++.++  .+.++++|+.|++++|++++++  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            999999998666778999999999999998 88886  4788999999999999999987  468899999999999998


Q ss_pred             cc
Q psy15002        343 HT  344 (357)
Q Consensus       343 ~~  344 (357)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=4.2e-18  Score=140.35  Aligned_cols=107  Identities=35%  Similarity=0.505  Sum_probs=63.7

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      +|++|++++|.++.++ ..|.++++|++|++++|.++.+++..|.. ++|++|++++|+++.+++..|..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4566666666666555 34566666666666666666555543332 555555555555555555556666666666666


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCc
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLS  246 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  246 (357)
                      +|.++.+++..|..+++|+.|++++|.+.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66666665555666666666666666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.2e-17  Score=137.52  Aligned_cols=108  Identities=30%  Similarity=0.455  Sum_probs=63.9

Q ss_pred             ceEEEccCCcCceeChh-hhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        140 LKRLNLGGNELTRVPQT-SLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      +++|++++|.++.+++. .|.++++|++|++++|.++.+++..+ .+++|++|++++|+++.+++..|.++++|++|+++
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  110 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            45555555555554432 24555555555555555555533322 23555555555566666655556666777777777


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      +|+++.+.+..+..+++|+.|++++|.+..
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            777776666666777777777777776653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=1.1e-17  Score=135.94  Aligned_cols=109  Identities=29%  Similarity=0.450  Sum_probs=71.4

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCC-CCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      +|++|++++|.++.+++..|.++++|++|++++|.++.+++..+ ..++|++|++++|+++.+++..+..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            46666666666666666666666777777777776666665543 33666666666666666665556666777777777


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      +|.++.+++..+..+++|+.|++++|.+..
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            777766666556666677777777776553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=2.5e-17  Score=135.64  Aligned_cols=129  Identities=32%  Similarity=0.493  Sum_probs=90.8

Q ss_pred             CeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc-cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEcc
Q psy15002        188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN-AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLG  266 (357)
Q Consensus       188 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  266 (357)
                      +++++++++++.++....   .++++|++++|+++.+++. .+..+++|+.|++++|+++++.+..|..+ ++|+.|+++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-ccCCEEECC
Confidence            567777777777765322   2677777777777776553 36667777777777777777766667666 677777777


Q ss_pred             CCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002        267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       267 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      +|.++.+++..+..+++|++|++++|+++++.+..+..+++|+.|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            777777776667777777777777777777766667777777777777777663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=4.1e-20  Score=176.69  Aligned_cols=178  Identities=19%  Similarity=0.285  Sum_probs=129.2

Q ss_pred             CCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCC-------------CeeeCccccCCCCcCceee-cccc------
Q psy15002        160 KLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNS-------------LAVVPSPALKSLNHLLILN-LNHN------  219 (357)
Q Consensus       160 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n------  219 (357)
                      ..++|+.|++++|.++.+|..+..+++|+.|++++|.             .....+..+..+++|+.|+ ++.|      
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence            3455555555555555555555555555555554442             2233334555566666666 4444      


Q ss_pred             -------cCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCC
Q psy15002        220 -------KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN  292 (357)
Q Consensus       220 -------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  292 (357)
                             .+..+++      ..|+.|++++|++++++ . +..+ ++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus       427 ~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~-~~~l-~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N  496 (567)
T 1dce_A          427 SKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-H-LEQL-LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN  496 (567)
T ss_dssp             HHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-C-GGGG-TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSS
T ss_pred             hhhhhcccccccCc------cCceEEEecCCCCCCCc-C-cccc-ccCcEeecCcccccccch-hhhcCCCCCEEECCCC
Confidence                   3333322      25889999999999874 3 7777 789999999999998874 6888999999999999


Q ss_pred             cCceeCcCcCCCCCCCCEeecCCCcCcccC-cccCCCCCCCcEEeCCCCcccccCccc
Q psy15002        293 RIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAA  349 (357)
Q Consensus       293 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~N~l~~~~~~~  349 (357)
                      .+++++  .+.++++|+.|+|++|++++++ +..+..+++|+.|+|++|+++++++..
T Consensus       497 ~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          497 ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            999876  6888999999999999999886 666788999999999999999987643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=4.2e-17  Score=134.35  Aligned_cols=127  Identities=27%  Similarity=0.427  Sum_probs=89.0

Q ss_pred             CeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccC
Q psy15002        188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG  267 (357)
Q Consensus       188 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  267 (357)
                      +++++++++++.++...   .+++++|++++|.++.++ ..|..+++|+.|++++|+++.+.+..|..+ ++|+.|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCC-CCCCEEECCC
Confidence            56777777777776532   246777777777777664 566677777777777777777766666666 6777777777


Q ss_pred             CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      |.++.+++..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777777666777777777777777777777666666777777777777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=1.1e-18  Score=171.88  Aligned_cols=192  Identities=18%  Similarity=0.135  Sum_probs=93.7

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEe-----cCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCC
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTI-----HNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENL  164 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l-----~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L  164 (357)
                      ..++.|++.++.+...+...+...+|+.+.+     ..|.+. +.+..+..+ ..|+.|++++|.+..++.. +.++++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l-~~L~~L~Ls~n~l~~l~~~-~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDD-QLWHALDLSNLQIFNISAN-IFKYDFL  249 (727)
T ss_dssp             --------------------------------------------------CC-CCCCEEECTTSCCSCCCGG-GGGCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccC-CCCcEEECCCCCCCCCChh-hcCCCCC
Confidence            4466777777777776655554443333332     233333 334445555 4577777777777777665 3467777


Q ss_pred             cEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCc
Q psy15002        165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK  244 (357)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  244 (357)
                      ++|+|++|.++.+|..+..+++|++|+|++|.++.++ ..+..+++|++|+|++|.++.++. .|..+++|+.|+|++|.
T Consensus       250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC-SSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSC
T ss_pred             CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC-hhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCc
Confidence            7777777777777776666677777777777777664 356777777777777777776643 47777777777777777


Q ss_pred             CcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCC
Q psy15002        245 LSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN  292 (357)
Q Consensus       245 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  292 (357)
                      +++..+..+.........+++++|.++...+      ..|+.|+++.|
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            7766555554331223345667777665433      24555555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=1.1e-20  Score=180.60  Aligned_cols=187  Identities=22%  Similarity=0.232  Sum_probs=133.6

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCc-------------c-ccccCCCCCCCCCCeEE-CCCC-------
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR-------------I-ALIEEGDFEGKALTQLD-LSQN-------  195 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l-~~~~~~~~~~~~L~~L~-l~~n-------  195 (357)
                      ++|+.|++++|.++.+|. .++++++|+.|++++|.             . ...|..+..+++|+.|+ ++.|       
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~  427 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  427 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence            446666666666665543 36666666666665542             1 11222222224455554 3333       


Q ss_pred             ------CCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc
Q psy15002        196 ------SLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE  269 (357)
Q Consensus       196 ------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  269 (357)
                            .+..++.      ..|+.|++++|.++.++ . +..+++|+.|++++|+++.+ |..+..+ ++|+.|++++|.
T Consensus       428 l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l-~~L~~L~Ls~N~  497 (567)
T 1dce_A          428 KFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRAL-PPALAAL-RCLEVLQASDNA  497 (567)
T ss_dssp             HHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCC-CGGGGGC-TTCCEEECCSSC
T ss_pred             hhhhcccccccCc------cCceEEEecCCCCCCCc-C-ccccccCcEeecCccccccc-chhhhcC-CCCCEEECCCCC
Confidence                  3333332      25888999999998874 3 88889999999999999876 5577777 799999999999


Q ss_pred             CcccCcccccCCCCCcEEEccCCcCceeC-cCcCCCCCCCCEeecCCCcCcccCccc---CCCCCCCcEEeC
Q psy15002        270 LTRVPQTSLSKLENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPPRV---FAHLPLLNSLEL  337 (357)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~L  337 (357)
                      +++++  .+..+++|+.|++++|++++++ +..+..+++|+.|+|++|+++++++..   +..+++|+.|++
T Consensus       498 l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          498 LENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99876  5888999999999999999986 678888999999999999999887643   234788888875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=6.5e-17  Score=131.34  Aligned_cols=128  Identities=27%  Similarity=0.422  Sum_probs=61.1

Q ss_pred             CeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccC
Q psy15002        188 TQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGG  267 (357)
Q Consensus       188 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  267 (357)
                      +.+++++++++.++...   .++++.|++++|+++.+++..+..+++|+.|++++|+++.+++..|..+ ++|+.|++++
T Consensus        10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL-TKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCS
T ss_pred             CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC-CccCEEECCC
Confidence            44555555555544321   1345555555555555544444445555555555555554444444443 4445555555


Q ss_pred             CcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        268 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       268 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      |.++.+++..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            4444444444444444444444444444444444444444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=2e-17  Score=133.25  Aligned_cols=135  Identities=24%  Similarity=0.268  Sum_probs=74.0

Q ss_pred             CcCceeecccccCc--ccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcE
Q psy15002        209 NHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK  286 (357)
Q Consensus       209 ~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  286 (357)
                      ++|+.|++++|.+.  .+ +..+..+++|+.|++++|.++.+  ..+..+ ++|+.|++++|.++...+..+..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            34455555555444  22 22344445555555555555444  333344 45555555555555533333444566666


Q ss_pred             EEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCc---ccCCCCCCCcEEeCCCCcccccCc
Q psy15002        287 LELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPP---RVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       287 L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      |++++|.++.++. ..+..+++|+.|++++|+++++++   ..+..+++|+.|++++|.+..++.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            6666666666542 455566666666666666666665   345666667777777766666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.71  E-value=1.3e-18  Score=171.26  Aligned_cols=219  Identities=20%  Similarity=0.219  Sum_probs=116.8

Q ss_pred             cccEEEecCCCcceecCccccccc---ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeE
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIG---KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQL  190 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~---~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  190 (357)
                      .+++|.+.++.+..+....+..+.   .++..++++.|.+. +++..+..+++|+.|+|++|.+..++..++.+++|++|
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            578888888887765433222110   01223333334443 44667889999999999999999999999988999999


Q ss_pred             ECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcC
Q psy15002        191 DLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNEL  270 (357)
Q Consensus       191 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  270 (357)
                      +|++|.++.++ ..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|.++.++. .|..+ ++|+.|+|++|.+
T Consensus       253 ~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l-~~L~~L~L~~N~l  328 (727)
T 4b8c_D          253 YLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPW-EFGNL-CNLQFLGVEGNPL  328 (727)
T ss_dssp             BCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCS-STTSC-TTCCCEECTTSCC
T ss_pred             EeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccCh-hhhcC-CCccEEeCCCCcc
Confidence            99999999776 4688899999999999999977 6678889999999999999998744 48777 8999999999999


Q ss_pred             cccCcccccCCC-CCcEEEccCCcCceeCcCcCCCCCCCCEeecCCC--------cCcccCcccCCCCCCCcEEeCCCCc
Q psy15002        271 TRVPQTSLSKLE-NLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN--------QLRTIPPRVFAHLPLLNSLELDGNH  341 (357)
Q Consensus       271 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--------~l~~~~~~~~~~~~~L~~L~L~~N~  341 (357)
                      ++.++..+..+. .+..+++++|.++...+      ..|+.|++++|        .+....+..+..+..+....+++|-
T Consensus       329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni  402 (727)
T 4b8c_D          329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT  402 (727)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC-----------------------------------------C
T ss_pred             CCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence            987766554322 22346788888876544      45667777776        3444444445566667778888887


Q ss_pred             cc
Q psy15002        342 IH  343 (357)
Q Consensus       342 l~  343 (357)
                      +.
T Consensus       403 l~  404 (727)
T 4b8c_D          403 LC  404 (727)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=5.6e-17  Score=130.57  Aligned_cols=116  Identities=24%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             cCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc-ccccCCCC
Q psy15002        205 LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLEN  283 (357)
Q Consensus       205 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~  283 (357)
                      +..+++|++|++++|.++.+  ..+..+++|+.|++++|+++...+..+..+ ++|+.|++++|.++.++. ..+..+++
T Consensus        45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-TTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC-CCCCEEeccCCccCcchhHHHHhcCCC
Confidence            34445555555555555544  344555555555555555555333333334 456666666666655432 34556666


Q ss_pred             CcEEEccCCcCceeCc---CcCCCCCCCCEeecCCCcCcccCc
Q psy15002        284 LRKLELLHNRIALIEE---GDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       284 L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                      |++|++++|.++.+++   ..+..+++|+.|++++|.+..+|.
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            6666666666666655   455566666666666666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=8.4e-17  Score=130.56  Aligned_cols=131  Identities=21%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             CCcCceeecccccCcccCcccCCCC-CCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcE
Q psy15002        208 LNHLLILNLNHNKISALHSNAFQGL-DTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK  286 (357)
Q Consensus       208 l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  286 (357)
                      +++|+.|++++|++..+ +. +..+ ++|+.|++++|+++++  ..+..+ ++|+.|++++|.++.+++..+..+++|++
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccC-CCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34444444444444433 11 2222 2445555555544444  233333 44555555555555444433344555555


Q ss_pred             EEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcc---cCCCCCCCcEEeCCCCccc
Q psy15002        287 LELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPR---VFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       287 L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~N~l~  343 (357)
                      |++++|.++.++. ..+..+++|+.|++++|.++.++..   .+..+++|+.||+++|...
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5555555544443 2344455555555555555555443   3445555556655555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.7e-16  Score=125.01  Aligned_cols=128  Identities=26%  Similarity=0.315  Sum_probs=78.7

Q ss_pred             CcCceeecccccCc-ccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEE
Q psy15002        209 NHLLILNLNHNKIS-ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL  287 (357)
Q Consensus       209 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  287 (357)
                      ++++.|++++|.+. ...+..+..+++|+.|++++|.++.+  ..+..+ ++|+.|++++|.+++..+..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL-NKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC-TTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC-CCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45666666666655 22233455566666666666666555  344444 566666666666666434445556677777


Q ss_pred             EccCCcCceeC-cCcCCCCCCCCEeecCCCcCcccCc---ccCCCCCCCcEEeCCC
Q psy15002        288 ELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTIPP---RVFAHLPLLNSLELDG  339 (357)
Q Consensus       288 ~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~L~~  339 (357)
                      ++++|.+++++ +..+..+++|+.|++++|+++++++   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            77777776653 2456667777777777777777665   4556677777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.65  E-value=1.8e-14  Score=132.05  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=43.0

Q ss_pred             cccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       277 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      .+..+.+|+.+.+..+ ++.++..+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.++.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3444555555555433 55555555655666666666432 55555555666666666666554 555666666555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=2.8e-16  Score=127.45  Aligned_cols=86  Identities=24%  Similarity=0.278  Sum_probs=35.9

Q ss_pred             cCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCE
Q psy15002        159 SKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEI  237 (357)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  237 (357)
                      .++.+|++|++++|.++.++. +... ++|++|++++|.++.+  ..+..+++|++|++++|.++.+++..+..+++|+.
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            334445555555554444422 2211 2444444444444433  13344444444444444444443333333444444


Q ss_pred             EEccCCcCcc
Q psy15002        238 LTIFENKLSL  247 (357)
Q Consensus       238 L~L~~n~l~~  247 (357)
                      |++++|+++.
T Consensus        93 L~L~~N~i~~  102 (176)
T 1a9n_A           93 LILTNNSLVE  102 (176)
T ss_dssp             EECCSCCCCC
T ss_pred             EECCCCcCCc
Confidence            4444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.63  E-value=1.2e-17  Score=161.38  Aligned_cols=211  Identities=18%  Similarity=0.123  Sum_probs=129.5

Q ss_pred             ccceEEEccCCcCceeCh-hhhcCCCCCcEEeccCCccc--cccCCCCCCCCCCeEECCC-----------CCCeeeCcc
Q psy15002        138 KKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIA--LIEEGDFEGKALTQLDLSQ-----------NSLAVVPSP  203 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~  203 (357)
                      ++|++|++++|.++.... ..+.++++|++|+++ +.++  .++......++|++|++++           +.++.....
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            457777777766544322 224666777777776 3332  1121112236677777772           444432211


Q ss_pred             -ccCCCCcCceeecccccCcccCcccCCC-CCCCCEEEcc----CCcCcccCC-----CccccccccccEEEccCCc--C
Q psy15002        204 -ALKSLNHLLILNLNHNKISALHSNAFQG-LDTLEILTIF----ENKLSLIEP-----DSFKGLEKKLKRLNLGGNE--L  270 (357)
Q Consensus       204 -~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~~~-----~~~~~~~~~L~~L~l~~n~--l  270 (357)
                       ....+++|++|+++.|.++......+.. +++|+.|+++    .|.+++.+.     ..+.++ ++|+.|++++|.  +
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l  450 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGL  450 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGC
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCc
Confidence             1334678888888777776544444433 6788888886    556655321     113344 688888886543  4


Q ss_pred             cccCcccc-cCCCCCcEEEccCCcCceeC-cCcCCCCCCCCEeecCCCcCccc-CcccCCCCCCCcEEeCCCCcccccCc
Q psy15002        271 TRVPQTSL-SKLENLRKLELLHNRIALIE-EGDFEGLHNLDSLVLAHNQLRTI-PPRVFAHLPLLNSLELDGNHIHTVDP  347 (357)
Q Consensus       271 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~N~l~~~~~  347 (357)
                      +......+ ..+++|++|++++|.+++.. +..+.++++|+.|++++|.++.. .+.....+++|+.|+|++|++++..-
T Consensus       451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred             cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence            43322222 34788999999999887633 22346789999999999998743 22334568899999999999887644


Q ss_pred             ccc
Q psy15002        348 AAF  350 (357)
Q Consensus       348 ~~~  350 (357)
                      ..+
T Consensus       531 ~~l  533 (592)
T 3ogk_B          531 DLM  533 (592)
T ss_dssp             TGG
T ss_pred             HHH
Confidence            433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=5.7e-16  Score=122.02  Aligned_cols=55  Identities=33%  Similarity=0.494  Sum_probs=22.9

Q ss_pred             cccEEEccCCcCcccC-cccccCCCCCcEEEccCCcCceeCc---CcCCCCCCCCEeec
Q psy15002        259 KLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIALIEE---GDFEGLHNLDSLVL  313 (357)
Q Consensus       259 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L  313 (357)
                      +|+.|++++|.+++++ +..+..+++|++|++++|.++++++   ..+..+++|+.|++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            3444444444443332 1223444444444444444444433   23334444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.62  E-value=1.1e-17  Score=161.57  Aligned_cols=150  Identities=15%  Similarity=0.061  Sum_probs=69.5

Q ss_pred             ccceEEEccCCcCceeCh----hhhcCCCCCcEEeccCCccc-----cccCCCCCCCCCCeEECCCCCCeeeCccccCCC
Q psy15002        138 KKLKRLNLGGNELTRVPQ----TSLSKLENLRKLELLHNRIA-----LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL  208 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  208 (357)
                      ++|++|++++|.+++...    ....++++|++|++++|.++     .++......++|++|++++|.+..++ ..+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence            456666666665543321    12345556666666666554     12222222356666666666555443 234445


Q ss_pred             CcCceeecccccCc---ccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc-ccccCCCCC
Q psy15002        209 NHLLILNLNHNKIS---ALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENL  284 (357)
Q Consensus       209 ~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L  284 (357)
                      ++|+.|+++.....   ......+..+++|+.++++++....+ +..+..+ ++|+.|++++|.++.... ..+..+++|
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            55555555432111   01112233444555555554432222 2223333 566666666666543221 123445555


Q ss_pred             cEEEcc
Q psy15002        285 RKLELL  290 (357)
Q Consensus       285 ~~L~l~  290 (357)
                      ++|+++
T Consensus       321 ~~L~L~  326 (592)
T 3ogk_B          321 EVLETR  326 (592)
T ss_dssp             CEEEEE
T ss_pred             CEEecc
Confidence            555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=5.1e-15  Score=119.23  Aligned_cols=85  Identities=28%  Similarity=0.427  Sum_probs=50.8

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL  216 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  216 (357)
                      ++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|. +++|++|++++|+++.+++..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            3466677777777776666666677777777777666666655442 255555555555555555544555555555555


Q ss_pred             ccccCc
Q psy15002        217 NHNKIS  222 (357)
Q Consensus       217 ~~n~l~  222 (357)
                      ++|.+.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=7.1e-15  Score=118.37  Aligned_cols=107  Identities=24%  Similarity=0.353  Sum_probs=61.1

Q ss_pred             CCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecC
Q psy15002        235 LEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLA  314 (357)
Q Consensus       235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  314 (357)
                      .+.+++++|+++.++...    +++++.|++++|.++++++..+..+++|++|++++|+++.+++..|.++++|+.|+|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            345555555555543221    1355556666666665555555556666666666666666655555556666666666


Q ss_pred             CCcCcccCcccCCCCCCCcEEeCCCCccccc
Q psy15002        315 HNQLRTIPPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       315 ~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      +|+|+++++..|..+++|+.|+|++|+|+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            6666666655555566666666666655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.60  E-value=1.4e-13  Score=126.21  Aligned_cols=95  Identities=19%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             ccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeC
Q psy15002        258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL  337 (357)
Q Consensus       258 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  337 (357)
                      ..|+.+.+.++ +..+...+|..++.|+.+.+. +.++.++..+|.++.+|+.+++..+ ++.+...+|.+|.+|+.+.+
T Consensus       265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            34555555432 223444445555555555553 3355555555555556666655433 55555555555556666655


Q ss_pred             CCCcccccCcccccCcccc
Q psy15002        338 DGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       338 ~~N~l~~~~~~~~~~l~~l  356 (357)
                      .. .++.|...+|.++.+|
T Consensus       342 p~-sv~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          342 PS-SVTKIPESAFSNCTAL  359 (394)
T ss_dssp             CT-TCCBCCGGGGTTCTTC
T ss_pred             Cc-ccCEEhHhHhhCCCCC
Confidence            43 2555555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.59  E-value=3.6e-13  Score=122.72  Aligned_cols=251  Identities=17%  Similarity=0.254  Sum_probs=170.5

Q ss_pred             ceEEEEEecCCCCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEe
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  168 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  168 (357)
                      ..++.+.+. ..++.|+..+|.+. +|+.+.+.++ ++.+...+|.+.  +|+.+.+.. +++.+...+|.+. +|+.+.
T Consensus        46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTC-CCSEEE
T ss_pred             cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC--CCceEECCc-eeeEeccceeccC-Cccccc
Confidence            456666665 45778888888775 7888888654 788888888775  477777754 3677777777664 688877


Q ss_pred             ccCCccccccCCCCCCCCCCeEECCCCCCeeeCccc--------------------------------------------
Q psy15002        169 LLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPA--------------------------------------------  204 (357)
Q Consensus       169 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------------------------------------------  204 (357)
                      +..+ ++.+...+|...+++.+.+..+ ++.+....                                            
T Consensus       120 lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             CCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             CCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            7643 4455555555444444433321 22222222                                            


Q ss_pred             ---------------cCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc
Q psy15002        205 ---------------LKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE  269 (357)
Q Consensus       205 ---------------~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  269 (357)
                                     +....+++.+.+..+ +..+...++.++..|+.+.+..+ ++.+...+|... ..++.+.+.. .
T Consensus       198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~-~~l~~i~l~~-~  273 (379)
T 4h09_A          198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC-TALKTLNFYA-K  273 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-TTCCEEEECC-C
T ss_pred             ccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee-ehhccccccc-c
Confidence                           233334444444332 44455566667777777777664 667777777766 6788887754 4


Q ss_pred             CcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCccc
Q psy15002        270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA  349 (357)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~  349 (357)
                      ++.++..+|..+.+|+.+.+.++.++.++..+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.|...+
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~a  351 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGA  351 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhH
Confidence            67777777888888888888888888888888888888888888654 78888888888888888888654 78888888


Q ss_pred             ccCcc
Q psy15002        350 FSGLE  354 (357)
Q Consensus       350 ~~~l~  354 (357)
                      |.++.
T Consensus       352 F~~c~  356 (379)
T 4h09_A          352 FEGSS  356 (379)
T ss_dssp             TTTSS
T ss_pred             hhCCC
Confidence            87764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.59  E-value=2.1e-15  Score=121.98  Aligned_cols=104  Identities=25%  Similarity=0.370  Sum_probs=73.9

Q ss_pred             EEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCcc
Q psy15002         95 LKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI  174 (357)
Q Consensus        95 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  174 (357)
                      ++++++.++.+|...+  .++++|++++|.++.+.+..|..+ ++|++|++++|.|+.+++..|.++++|++|++++|.+
T Consensus        17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            3344444445554433  356677777777777766666666 5688888888888888877778888888888888888


Q ss_pred             ccccCCCCC-CCCCCeEECCCCCCeeeC
Q psy15002        175 ALIEEGDFE-GKALTQLDLSQNSLAVVP  201 (357)
Q Consensus       175 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~  201 (357)
                      +.+++..+. +++|++|++++|.+....
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ceeCHHHhccccCCCEEEeCCCCccccc
Confidence            888877444 488888888888776543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.7e-14  Score=116.54  Aligned_cols=104  Identities=25%  Similarity=0.452  Sum_probs=50.6

Q ss_pred             ceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccC
Q psy15002        212 LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLH  291 (357)
Q Consensus       212 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  291 (357)
                      +.+++++|+++.++.. +.  ++|+.|++++|+++++.+..|..+ ++|+.|++++|+++.+++..+..+++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-IP--TDKQRLWLNNNQITKLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCC-cC--CCCcEEEeCCCCccccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4455555555544332 11  445555555555555544444444 4455555555555554444444445555555555


Q ss_pred             CcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        292 NRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       292 n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      |+++.+++..|..+++|+.|+|++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            5555544444444455555555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.57  E-value=4.4e-17  Score=157.42  Aligned_cols=35  Identities=23%  Similarity=0.103  Sum_probs=20.9

Q ss_pred             CCCCeEECCCCCCeeeCc-cccCCCCcCceeecccc
Q psy15002        185 KALTQLDLSQNSLAVVPS-PALKSLNHLLILNLNHN  219 (357)
Q Consensus       185 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  219 (357)
                      ++|++|++++|.++.... ..+..+++|+.|++++|
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            678888888777543221 12345566666666655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.57  E-value=4.2e-13  Score=122.93  Aligned_cols=242  Identities=17%  Similarity=0.364  Sum_probs=157.0

Q ss_pred             EEEEEecCCCCcCccccccCCC-cccEEEecCC---CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEE
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS---SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKL  167 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~---~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  167 (357)
                      ++.+.+.. .++.|...+|.+. +|+.+.+.++   .++.+...+|.+. .+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cceehhhhhhhhcccccc
Confidence            55566653 3666667777654 6777776543   3566666666554 33444443322 344444444444444444


Q ss_pred             eccCC----------------------ccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc-------
Q psy15002        168 ELLHN----------------------RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH-------  218 (357)
Q Consensus       168 ~l~~n----------------------~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-------  218 (357)
                      .+..+                      .++.+...+|...+|+.+.+..+ +..+...+|..+.+++......       
T Consensus       143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~  221 (394)
T 4gt6_A          143 TIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAID  221 (394)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred             cccceeeeecccceecccccccccccceeeEeccccccccceeEEEECCc-ccccccchhhhccccceeccccccccccc
Confidence            44321                      23344444444444444444322 2223333444444443332211       


Q ss_pred             -----------------------------ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCc
Q psy15002        219 -----------------------------NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE  269 (357)
Q Consensus       219 -----------------------------n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  269 (357)
                                                   +.+..+...+|.++..|+.+.+.++ +..+...+|... +.|+.+.+. +.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c-~~L~~i~l~-~~  298 (394)
T 4gt6_A          222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNC-PALQDIEFS-SR  298 (394)
T ss_dssp             SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTC-TTCCEEECC-TT
T ss_pred             ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccc-cceecCcccccc-cccccccCC-Cc
Confidence                                         1233344567888888999988765 456777888887 799999996 56


Q ss_pred             CcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcc
Q psy15002        270 LTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l  342 (357)
                      ++.++..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++..
T Consensus       299 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          299 ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            88899899999999999999865 99999999999999999999754 8999999999999999999998854

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=2.4e-13  Score=124.51  Aligned_cols=244  Identities=15%  Similarity=0.245  Sum_probs=150.1

Q ss_pred             CCcCccccccCCC-cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccC
Q psy15002        101 NLPKLTGFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE  179 (357)
Q Consensus       101 ~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  179 (357)
                      ++++|+..+|.+. +|+++.+.+ .++.|...+|.+. .+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+..
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            4677888888775 788888874 4888888888877 56888888754 77888888888888887766533 333333


Q ss_pred             CCC----------------------CC-CCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCC
Q psy15002        180 GDF----------------------EG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLE  236 (357)
Q Consensus       180 ~~~----------------------~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  236 (357)
                      .+|                      .. .+|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+...+|.++..|+
T Consensus       134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~  211 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE  211 (394)
T ss_dssp             TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred             eeeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence            333                      33 44555555432 34455555555555555555543 4444444555555554


Q ss_pred             EEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcC--------------------ce
Q psy15002        237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI--------------------AL  296 (357)
Q Consensus       237 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------~~  296 (357)
                      .+.+..+.. .+....+..  ..++.+.+.. .++.+....+..+..++.+.+..+..                    ..
T Consensus       212 ~i~~~~~~~-~i~~~~~~~--~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          212 NMEFPNSLY-YLGDFALSK--TGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             BCCCCTTCC-EECTTTTTT--CCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE
T ss_pred             eeecCCCce-Eeehhhccc--CCCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee
Confidence            444433221 111111111  2344444332 22333333444444555444443311                    12


Q ss_pred             eCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       297 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      ++...|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.+ .++.|...+|.++.+|
T Consensus       288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSL  345 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTC
T ss_pred             eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCC
Confidence            45556777888999998765 8889999999999999999975 4999999999998765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=1.6e-16  Score=153.45  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=23.2

Q ss_pred             CCCcCceeecccccCcccCc-ccCCCCCCCCEEEccCC
Q psy15002        207 SLNHLLILNLNHNKISALHS-NAFQGLDTLEILTIFEN  243 (357)
Q Consensus       207 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n  243 (357)
                      .+++|+.|++++|.++.... ..+..+++|+.|++++|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            35678888888877553221 12345677777777766

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.50  E-value=7.6e-12  Score=113.93  Aligned_cols=230  Identities=16%  Similarity=0.298  Sum_probs=173.5

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      +++.+.+... ++.|...+|.+. .+|+.+.+..+ ++.|...+|.++ +|+.+.+.. .++.+...+|...+|+.+.+.
T Consensus        47 ~i~~v~ip~~-vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp  121 (379)
T 4h09_A           47 RISEVRVNSG-ITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFP  121 (379)
T ss_dssp             GCSEEEECTT-EEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred             CCEEEEeCCC-ccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCC
Confidence            7999999754 999999999988 67999999754 899999999987 688888764 588999999999999999997


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCC----------------------------------------
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLD----------------------------------------  233 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~----------------------------------------  233 (357)
                      .+ +..+...+|... +++.+.+..+ ++.+....|....                                        
T Consensus       122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
T 4h09_A          122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE  198 (379)
T ss_dssp             TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred             Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence            64 556666666554 4555444332 3333333333333                                        


Q ss_pred             -------------------CCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcC
Q psy15002        234 -------------------TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRI  294 (357)
Q Consensus       234 -------------------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  294 (357)
                                         .|+.+.+..+ +..+....|... ..|+.+.+..+ ++.+...++..+.+|+.+.+.. .+
T Consensus       199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i  274 (379)
T 4h09_A          199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KV  274 (379)
T ss_dssp             EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred             cccccceeEEeecccccccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhccccccc-cc
Confidence                               3333333322 334444555555 57777777654 6677777788888899888864 48


Q ss_pred             ceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        295 ALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      +.++..+|.++.+|+.+.+.++.++.++..+|.+|.+|+.++|..+ ++.|...+|.++.+|
T Consensus       275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            8888889999999999999999999999999999999999999764 999999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=7.8e-17  Score=133.37  Aligned_cols=134  Identities=28%  Similarity=0.385  Sum_probs=95.8

Q ss_pred             ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCC
Q psy15002        204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN  283 (357)
Q Consensus       204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  283 (357)
                      .+..+++|++|++++|.+..++  .+..+++|+.|++++|+++.++ ..+..+ ++|+.|++++|.+++++  .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~~~-~~L~~L~L~~N~l~~l~--~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVA-DTLEELWISYNQIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHHHH-HHCSEEEEEEEECCCHH--HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccccc-chhhcC-CcCCEEECcCCcCCcCC--ccccCCC
Confidence            5666777778888777777754  5666777888888888777653 344444 67888888888887765  3667778


Q ss_pred             CcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcc----------cCCCCCCCcEEeCCCCccccc
Q psy15002        284 LRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPR----------VFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       284 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      |++|++++|.++.++. ..+..+++|+.|++++|.+.+.++.          .+..+++|+.||  +|+++..
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence            8888888888887654 4566788888888888888655332          356778888886  6766554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2.2e-16  Score=130.65  Aligned_cols=136  Identities=21%  Similarity=0.295  Sum_probs=111.3

Q ss_pred             CCCcCceeecccccCcccCcc------cCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002        207 SLNHLLILNLNHNKISALHSN------AFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK  280 (357)
Q Consensus       207 ~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  280 (357)
                      ....++.++++.+.+....+.      .+..+++|+.|++++|+++.++  .+..+ ++|+.|++++|.++.++. .+..
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l-~~L~~L~l~~n~l~~l~~-~~~~   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGM-ENLRILSLGRNLIKKIEN-LDAV   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHH-TTCCEEEEEEEEECSCSS-HHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccC-CCCCEEECCCCCcccccc-hhhc
Confidence            344555566666555544333      6788899999999999999874  77777 899999999999998874 4666


Q ss_pred             CCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc-ccCCCCCCCcEEeCCCCcccccCcc
Q psy15002        281 LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPA  348 (357)
Q Consensus       281 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~~  348 (357)
                      +++|++|++++|++++++  .+..+++|+.|++++|++++++. ..+..+++|+.|++++|++.+..+.
T Consensus        92 ~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           92 ADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            789999999999999986  47778999999999999998775 4578899999999999999887544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=1.3e-12  Score=117.49  Aligned_cols=114  Identities=22%  Similarity=0.323  Sum_probs=80.4

Q ss_pred             CCCCCCCCCc-eeccccCCeEEecccC-ChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecC-C
Q psy15002         47 CPPHNEISPC-QCSVKKNGLDILCEFT-DNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHN-S  123 (357)
Q Consensus        47 Cp~~~~~~~C-~C~~~~~~~~~~C~~~-~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~-~  123 (357)
                      ||.     .| .|...    .++|.+. +++.+|                            . .....+|+.|+|++ |
T Consensus         1 cp~-----~c~~C~~~----~v~~~~~n~l~~ip----------------------------~-l~~~~~L~~L~l~~~n   42 (347)
T 2ifg_A            1 CPD-----ACCPHGSS----GLRCTRDGALDSLH----------------------------H-LPGAENLTELYIENQQ   42 (347)
T ss_dssp             CCS-----SSCCSSSS----CEECCSSCCCTTTT----------------------------T-SCSCSCCSEEECCSCS
T ss_pred             CCC-----cCccccCC----EEEcCCCCCCCccC----------------------------C-CCCCCCeeEEEccCCC
Confidence            888     59 99643    6788766 555554                            3 12222566667764 6


Q ss_pred             CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCee
Q psy15002        124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV  199 (357)
Q Consensus       124 ~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  199 (357)
                      .++.+++..|.++ ++|++|+|++|.|+++++..|.++++|++|+|++|.|+.+|+..+....|+.|++.+|.+..
T Consensus        43 ~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           43 HLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            6766666666666 56888888888888877777778888888888888888777777766558888888777653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.5e-12  Score=117.13  Aligned_cols=105  Identities=26%  Similarity=0.364  Sum_probs=71.2

Q ss_pred             ceeecccc-cCcccCcccCCCCCCCCEEEccC-CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEc
Q psy15002        212 LILNLNHN-KISALHSNAFQGLDTLEILTIFE-NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  289 (357)
Q Consensus       212 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  289 (357)
                      ..++++++ +++.++.  +..+++|+.|+|++ |.++.+++..|..+ ++|+.|+|++|+++++++..|..+++|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            34566666 6766644  66667777777774 77777766666666 67777777777777777666677777777777


Q ss_pred             cCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002        290 LHNRIALIEEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       290 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      ++|+++.+++..+..++ |+.|+|++|.+..
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            77777777666665544 7777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=7.5e-15  Score=133.11  Aligned_cols=182  Identities=19%  Similarity=0.180  Sum_probs=116.3

Q ss_pred             CCCCcEEeccCCcccccc-----CCCCCC-CCCCeEECCCCCCeeeCcccc-CCCCcCceeecccccCcccCcccC----
Q psy15002        161 LENLRKLELLHNRIALIE-----EGDFEG-KALTQLDLSQNSLAVVPSPAL-KSLNHLLILNLNHNKISALHSNAF----  229 (357)
Q Consensus       161 l~~L~~L~l~~n~l~~~~-----~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l----  229 (357)
                      +++|++|++++|.++...     ..+... .+|++|++++|.++......+ ..+++|+.|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467899999999987432     222222 588999999998865433222 235678899999998876544433    


Q ss_pred             -CCCCCCCEEEccCCcCcccCCCcc----ccccccccEEEccCCcCcccC----cccccCCCCCcEEEccCCcCceeCcC
Q psy15002        230 -QGLDTLEILTIFENKLSLIEPDSF----KGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLHNRIALIEEG  300 (357)
Q Consensus       230 -~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~  300 (357)
                       ...++|+.|++++|.++......+    ... ++|+.|++++|.++...    ...+...++|++|++++|.++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC-SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcC-CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             345788999999998876433222    334 67888999888887543    23455667888888888888765432


Q ss_pred             ----cCCCCCCCCEeecCCCcCcccCcccCCCC---C--CCcEEe--CCCCccc
Q psy15002        301 ----DFEGLHNLDSLVLAHNQLRTIPPRVFAHL---P--LLNSLE--LDGNHIH  343 (357)
Q Consensus       301 ----~~~~~~~L~~L~L~~n~l~~~~~~~~~~~---~--~L~~L~--L~~N~l~  343 (357)
                          .+...++|+.|+|++|.|+......+..+   .  .++.+.  +.+|.++
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence                23346788888888888875443222211   2  166666  6666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=1.7e-14  Score=130.72  Aligned_cols=181  Identities=18%  Similarity=0.202  Sum_probs=103.0

Q ss_pred             ccceEEEccCCcCceeChhhhcCC-----CCCcEEeccCCccccccCC-CC-CCCCCCeEECCCCCCeeeCcccc-----
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKL-----ENLRKLELLHNRIALIEEG-DF-EGKALTQLDLSQNSLAVVPSPAL-----  205 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~-----  205 (357)
                      +.|++|++++|.++......+...     ++|++|++++|.++..... +. ..++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            457777777777665444433322     5677777777766532111 11 12567777777777765443332     


Q ss_pred             CCCCcCceeecccccCcccCc----ccCCCCCCCCEEEccCCcCcccC----CCccccccccccEEEccCCcCcccCcc-
Q psy15002        206 KSLNHLLILNLNHNKISALHS----NAFQGLDTLEILTIFENKLSLIE----PDSFKGLEKKLKRLNLGGNELTRVPQT-  276 (357)
Q Consensus       206 ~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~-  276 (357)
                      ...++|++|++++|.++....    ..+...++|++|+|++|.++...    ...+... ++|+.|++++|.++..... 
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHHHH
Confidence            235677788888877764322    23355677888888888776543    2233334 5788888888887754322 


Q ss_pred             ---cccCCCCCcEEEccCCcCceeCcCcCCCC---C--CCCEee--cCCCcCc
Q psy15002        277 ---SLSKLENLRKLELLHNRIALIEEGDFEGL---H--NLDSLV--LAHNQLR  319 (357)
Q Consensus       277 ---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~--~L~~L~--L~~n~l~  319 (357)
                         .+...++|++|++++|.|+......+...   .  .++.+.  +..+.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence               23345778888888888776544333211   2  166666  5555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=7.8e-10  Score=99.45  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=36.9

Q ss_pred             ccceEEEccCCcCce-----e----ChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCcccc--C
Q psy15002        138 KKLKRLNLGGNELTR-----V----PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPAL--K  206 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~-----~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~  206 (357)
                      ++|+.|.+.+.....     +    ....+..+|+|+.|+++++.-..+++  ...++|++|++..+.+..-....+  .
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHc
Confidence            467777775543211     1    11234556677777776653112222  124556666665555433221122  1


Q ss_pred             CCCcCceeecc
Q psy15002        207 SLNHLLILNLN  217 (357)
Q Consensus       207 ~l~~L~~L~l~  217 (357)
                      .+|+|+.|+|+
T Consensus       217 ~lp~L~~L~L~  227 (362)
T 2ra8_A          217 DLPNLEKLVLY  227 (362)
T ss_dssp             BCTTCCEEEEE
T ss_pred             cCCCCcEEEEe
Confidence            45555555553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=4.9e-09  Score=94.25  Aligned_cols=178  Identities=13%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             hcCCCCCcEEeccCCcccc----------ccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcc
Q psy15002        158 LSKLENLRKLELLHNRIAL----------IEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSN  227 (357)
Q Consensus       158 ~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  227 (357)
                      ...+++|+.|.+.......          +...+...|+|+.|+++++.-..+++  +. +++|+.|++..+.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH
Confidence            4456778888776543221          11112233778888887763222322  22 67888888877766543222


Q ss_pred             cC--CCCCCCCEEEccC--Cc------CcccCCCccc-cccccccEEEccCCcCcccCcccc---cCCCCCcEEEccCCc
Q psy15002        228 AF--QGLDTLEILTIFE--NK------LSLIEPDSFK-GLEKKLKRLNLGGNELTRVPQTSL---SKLENLRKLELLHNR  293 (357)
Q Consensus       228 ~l--~~l~~L~~L~L~~--n~------l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~  293 (357)
                      .+  ..+|+|+.|+|+.  +.      +..+.+ .+. ...++|+.|++.+|.+.......+   ..+++|++|+|+.|.
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            23  2567888887753  11      111111 111 112678888888887764221111   246788888888888


Q ss_pred             CceeCcC----cCCCCCCCCEeecCCCcCcccCcccCCC-CCCCcEEeCCCCc
Q psy15002        294 IALIEEG----DFEGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNH  341 (357)
Q Consensus       294 l~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~N~  341 (357)
                      ++.....    .+..+++|+.|++++|.++......+.. +  ...+++++++
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7764321    2234678888888888776433222222 2  3567887776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.38  E-value=3.9e-07  Score=69.12  Aligned_cols=38  Identities=34%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA  175 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  175 (357)
                      .+|++|+|++|.|+.++.+.|..+++|++|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            45778888888888888777888888888888877654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=6.8e-08  Score=78.37  Aligned_cols=13  Identities=23%  Similarity=0.450  Sum_probs=6.6

Q ss_pred             cceEEEccCC-cCc
Q psy15002        139 KLKRLNLGGN-ELT  151 (357)
Q Consensus       139 ~L~~L~ls~n-~l~  151 (357)
                      +|++|++++| .+.
T Consensus        37 ~L~~L~L~~n~~i~   50 (185)
T 1io0_A           37 DLEEVNLNNIMNIP   50 (185)
T ss_dssp             TCCEEECTTCTTCC
T ss_pred             CCCEEEecCCCCCC
Confidence            3555555555 444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.32  E-value=8.9e-08  Score=77.67  Aligned_cols=38  Identities=34%  Similarity=0.282  Sum_probs=16.6

Q ss_pred             CcCceeecccccCcccC----cccCCCCCCCCEEEc--cCCcCc
Q psy15002        209 NHLLILNLNHNKISALH----SNAFQGLDTLEILTI--FENKLS  246 (357)
Q Consensus       209 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L--~~n~l~  246 (357)
                      ++|++|++++|.+....    ...+...++|+.|++  ++|.+.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            44445555555444321    223333444555555  445444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.07  E-value=1.3e-06  Score=74.64  Aligned_cols=63  Identities=29%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             CCCCCCEEEccCCcCcccCC--CccccccccccEEEccCCcCcccCc-ccccCCCCCcEEEccCCcCc
Q psy15002        231 GLDTLEILTIFENKLSLIEP--DSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIA  295 (357)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~  295 (357)
                      .+++|+.|+|++|+++++..  ..+..+ ++|+.|+|++|.++++.. ..+..+ +|++|++++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            45677777777777766532  233334 566666666666655421 111222 4555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=3.3e-07  Score=78.31  Aligned_cols=61  Identities=34%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             ccccEEEccCCcCcccCc--ccccCCCCCcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCc
Q psy15002        258 KKLKRLNLGGNELTRVPQ--TSLSKLENLRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       258 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~  319 (357)
                      ++|+.|+|++|.+++++.  ..+..+++|+.|+|++|+++++.. ..+..+ +|++|+|++|.++
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            345555555555544331  222344555555555555544411 112222 4555555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=9.5e-07  Score=70.15  Aligned_cols=82  Identities=16%  Similarity=0.218  Sum_probs=37.7

Q ss_pred             CCCEEEccCCcCcccCCCccccccccccEEEccCCc-CcccCcccccCC----CCCcEEEccCCc-CceeCcCcCCCCCC
Q psy15002        234 TLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNE-LTRVPQTSLSKL----ENLRKLELLHNR-IALIEEGDFEGLHN  307 (357)
Q Consensus       234 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~~~  307 (357)
                      .|+.||++++.++......+.++ ++|+.|++++|. +++..-..+..+    ++|++|++++|. |++-....+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~-~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGL-QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTC-SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCC-CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45566666655554443444444 455555555553 333222222222    245555555542 44433333344455


Q ss_pred             CCEeecCCC
Q psy15002        308 LDSLVLAHN  316 (357)
Q Consensus       308 L~~L~L~~n  316 (357)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=3.8e-06  Score=66.65  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             cCceeecccccCcccCcccCCCCCCCCEEEccCCc-CcccCCCccccc---cccccEEEccCCc-CcccCcccccCCCCC
Q psy15002        210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFENK-LSLIEPDSFKGL---EKKLKRLNLGGNE-LTRVPQTSLSKLENL  284 (357)
Q Consensus       210 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~~L~~L~l~~n~-l~~~~~~~~~~l~~L  284 (357)
                      +|+.|+++++.++......+.++++|+.|+|++|. ++......+...   .++|+.|++++|. ++......+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46666666666655544555666677777777763 444322333321   1357777777763 665443445667778


Q ss_pred             cEEEccCCc
Q psy15002        285 RKLELLHNR  293 (357)
Q Consensus       285 ~~L~l~~n~  293 (357)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888777763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.75  E-value=4.6e-05  Score=57.57  Aligned_cols=56  Identities=23%  Similarity=0.355  Sum_probs=43.8

Q ss_pred             cEEEccCCcCc--ccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        261 KRLNLGGNELT--RVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       261 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      ..++.++++++  .+|.. +.  ++|++|+|++|+|+.++...|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46788888887  77743 22  46888888888888888888888888888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.10  E-value=0.00022  Score=57.67  Aligned_cols=17  Identities=12%  Similarity=0.206  Sum_probs=7.9

Q ss_pred             CCCCCCCEEEccCCcCc
Q psy15002        230 QGLDTLEILTIFENKLS  246 (357)
Q Consensus       230 ~~l~~L~~L~L~~n~l~  246 (357)
                      ...+.|+.|+|++|++.
T Consensus        67 ~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCCcCEEEccCCCCC
Confidence            33344444555444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.08  E-value=0.00015  Score=58.61  Aligned_cols=114  Identities=10%  Similarity=0.020  Sum_probs=78.9

Q ss_pred             cCCCCCCCCEEEccCC-cCcccC----CCccccccccccEEEccCCcCcccCcc----cccCCCCCcEEEccCCcCceeC
Q psy15002        228 AFQGLDTLEILTIFEN-KLSLIE----PDSFKGLEKKLKRLNLGGNELTRVPQT----SLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       228 ~l~~l~~L~~L~L~~n-~l~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      .+..-+.|+.|+|++| ++....    ...+..- +.|+.|+|++|.+......    .+.....|++|+|++|.|+...
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            3455678899999885 665422    1233333 6899999999999864432    3445689999999999998644


Q ss_pred             c----CcCCCCCCCCEeecCCCc---Cccc----CcccCCCCCCCcEEeCCCCcc
Q psy15002        299 E----GDFEGLHNLDSLVLAHNQ---LRTI----PPRVFAHLPLLNSLELDGNHI  342 (357)
Q Consensus       299 ~----~~~~~~~~L~~L~L~~n~---l~~~----~~~~~~~~~~L~~L~L~~N~l  342 (357)
                      .    .++...+.|+.|+|++|.   +..-    ...++...+.|+.|+++.|.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3    355667789999998763   3421    123445668899999987754

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.31  E-value=0.55  Score=33.01  Aligned_cols=49  Identities=22%  Similarity=0.445  Sum_probs=36.2

Q ss_pred             CCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCC
Q psy15002        267 GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN  316 (357)
Q Consensus       267 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  316 (357)
                      +..++.+...+|.++.+|+.+.+-.+ ++.|...+|.++.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34566677777778888888887754 77777778888888888887654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=88.41  E-value=1.4  Score=30.93  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             CcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCC
Q psy15002        243 NKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN  292 (357)
Q Consensus       243 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  292 (357)
                      ..++.+...+|.++ .+|+.+.+..+ ++.+...+|..+.+|+.+.+.+.
T Consensus         6 ~~vt~I~~~aF~~c-~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGN-TVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTC-TTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCC-CCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34555555555555 55666655542 45555555666666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 1e-14
 Identities = 60/275 (21%), Positives = 98/275 (35%), Gaps = 59/275 (21%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDL 192
             +      L+L  N++T +       L+NL  L L++N+I+ I  G F     L +L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 193 SQNSLAVVPSPALKSLNHL-----------------------LILNLNHNKISALHSNAF 229
           S+N L  +P    K+L  L                       + L  N  K S + + AF
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 230 QGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE- 288
           QG+  L  + I +  ++ I           L  L+L GN++T+V   SL  L NL KL  
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 289 ----------------------LLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF 326
                                  L+N   +   G       +  + L +N +  I    F
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 327 A------HLPLLNSLELDGNHIHT--VDPAAFSGL 353
                       + + L  N +    + P+ F  +
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 2e-12
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 9/170 (5%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLS 246
           L  +  S   L  VP         L   +L +NKI+ +    F+ L  L  L +  NK+S
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 247 LIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLH 306
            I P +F  L  KL+RL L  N+L  +P+     L+ LR      N I  + +  F GL+
Sbjct: 69  KISPGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLN 124

Query: 307 NLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
            +  + L  N L++       F  +  L+ + +   +I T+       L 
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 174

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 27/232 (11%)

Query: 34  LLLPCCLLQSVQQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIF 93
           L L    L+ +   P     +  +  V +N +  + +   N   Q  +  L +       
Sbjct: 84  LYLSKNQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
                   + KL+       +I  +                 +   L  L+L GN++T+V
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIP--------------QGLPPSLTELHLDGNKITKV 186

Query: 154 PQTSLSKLENLRKLEL-LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLL 212
              SL  L NL KL L  ++  A+          L +L L+ N L  VP   L    ++ 
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQ 245

Query: 213 ILNLNHNKISALHSNAFQG------LDTLEILTIFENKLSL--IEPDSFKGL 256
           ++ L++N ISA+ SN F          +   +++F N +    I+P +F+ +
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 7e-13
 Identities = 58/212 (27%), Positives = 84/212 (39%), Gaps = 3/212 (1%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA--LIEEGDFEGKALTQLD 191
             I    +R+ L GN ++ VP  S     NL  L L  N +A                  
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
                L  V       L  L  L+L+   +  L    F+GL  L+ L + +N L  +  D
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSL 311
           +F+     L  L L GN ++ VP+ +   L +L +L L  NR+A +    F  L  L +L
Sbjct: 148 TFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 312 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
            L  N L  +P    A L  L  L L+ N   
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 3e-11
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 2/168 (1%)

Query: 187 LTQLDLSQNSLAVVPSPALKSLNHLLILNLN-HNKISALHSNAFQGLDTLEILTIFENKL 245
             ++ L  N ++ VP+ + ++  +L IL L+ +       +         ++      +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 246 SLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGL 305
             ++P +F GL  +L  L+L    L  +       L  L+ L L  N +  + +  F  L
Sbjct: 94  RSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 306 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 353
            NL  L L  N++ ++P R F  L  L+ L L  N +  V P AF  L
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 7e-09
 Identities = 59/289 (20%), Positives = 115/289 (39%), Gaps = 17/289 (5%)

Query: 47  CPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLT 106
           CP       C C   +  +   C     Q +   +             + L  N +  + 
Sbjct: 2   CP-----GACVCY-NEPKVTTSCPQQGLQAVPVGIPAA-------SQRIFLHGNRISHVP 48

Query: 107 GFIFFGL-DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLR 165
              F    ++  L +H++ LA ++ ++ + +    +       +L  V   +   L  L 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 166 KLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISAL 224
            L L    +  +  G F G  AL  L L  N+L  +P    + L +L  L L+ N+IS++
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 225 HSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENL 284
              AF+GL +L+ L + +N+++ + P +F+ L + +       N L+ +P  +L+ L  L
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRAL 227

Query: 285 RKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
           + L L  N   + +         L     + +++    P+  A   L  
Sbjct: 228 QYLRLNDNPW-VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 9e-09
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 10/209 (4%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQ----NS 196
              +     L  VP   +      +++ L  NRI+ +    F       L +        
Sbjct: 14  VTTSCPQQGLQAVPV-GIPA--ASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVL 68

Query: 197 LAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGL 256
             +  +          +   ++ ++ ++    F GL  L  L +    L  + P  F+G 
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG- 127

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN 316
              L+ L L  N L  +P  +   L NL  L L  NRI+ + E  F GLH+LD L+L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 317 QLRTIPPRVFAHLPLLNSLELDGNHIHTV 345
           ++  + P  F  L  L +L L  N++  +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 2e-12
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 30/201 (14%)

Query: 159 SKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH 218
           +KL NL  L   +N+I+ I         L +L L+ N L  + +  L SL +L  L+L +
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 250

Query: 219 NKISALHSNAFQGLDTLEILTIFENKLSLIEP-------------------DSFKGLEKK 259
           N+IS L      GL  L  L +  N++S I P                    S     K 
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 260 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLR 319
           L  L L  N ++ +    +S L  L++L   +N+++ +       L N++ L   HNQ+ 
Sbjct: 309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQIS 364

Query: 320 TIPPRVFAHLPLLNSLELDGN 340
            + P   A+L  +  L L+  
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
           I  D+   L +K+ +  LG   +T     S + L+ +  L+     I  I+    E L+N
Sbjct: 15  IFTDT--ALAEKM-KTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNN 67

Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 343
           L  +  ++NQL  I P    +L  L  + ++ N I 
Sbjct: 68  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 101

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 79  HTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIG- 137
           + ++ +   +GL        + N  +    I    ++ +LT++ +++     S +S +  
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-----SDISPVSS 327

Query: 138 -KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQN 195
             KL+RL    N+++ V   SL+ L N+  L   HN+I+ L    +     +TQL L+  
Sbjct: 328 LTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLNDQ 383

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 6e-08
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 4/186 (2%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS 193
             + K    L+L  N L      +L     L +L L    +   +        +      
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDL 84

Query: 194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSF 253
            ++         ++L  L +L+++ N++++L   A +GL  L+ L +  N+L  + P   
Sbjct: 85  SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 254 KGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVL 313
               K  K  +L  N LT +P   L+ LENL  L L  N +  I +G F G H L    L
Sbjct: 145 TPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFL 202

Query: 314 AHNQLR 319
             N   
Sbjct: 203 HGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 6/198 (3%)

Query: 154 PQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLI 213
           P   +SK+ +  ++      +  +       K  T L LS+N L       L     L  
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           LNL+  +++         L  L  L +  N+L  +           +  ++   N LT +
Sbjct: 60  LNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLTSL 115

Query: 274 PQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN 333
           P  +L  L  L++L L  N +  +  G       L+ L LA+N L  +P  +   L  L+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 334 SLELDGNHIHTVDPAAFS 351
           +L L  N ++T+    F 
Sbjct: 176 TLLLQENSLYTIPKGFFG 193

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 20/213 (9%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
               ++  G + +T     + + L+ +  L      +  IE   +    L  L+L  N +
Sbjct: 19  ANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGVQYL-NNLIGLELKDNQI 75

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +      +    L L+ N  K  +  +            T   +   L    + + L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 258 KKLKRL-------------NLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG 304
             L ++              L          T L+ L  L  L+   N+I+ I       
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 305 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
           L NL  + L +NQ+  + P   A+   L  + L
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
             L+ LN+  N+L  +P    +    L +L    N +A + E       NL  L + +N 
Sbjct: 284 PSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNP 335

Query: 318 LRTIPPRVFAHLPLLNSLELD 338
           LR  P         +  L ++
Sbjct: 336 LREFPD----IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
             L+ LN+  N+L  +P    +    L +L    N +A + E     + L QL +  N L
Sbjct: 284 PSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL 336

Query: 198 AVVPSPALKSLNHLLILN 215
              P    +S+  L + +
Sbjct: 337 REFPD-IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 192 LSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPD 251
              N+ +            L  LN+++NK+  L +        LE L    N L+     
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA----- 317

Query: 252 SFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR 285
               L + LK+L++  N L   P      +E+LR
Sbjct: 318 EVPELPQNLKQLHVEYNPLREFPD-IPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 215 NLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVP 274
               N  S    +      +LE L +  NKL  + P        +L+RL    N L  VP
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPP----RLERLIASFNHLAEVP 320

Query: 275 QTSLSKLENLRKLELLHNRIALIEEGDFEGLHNL 308
           +      +NL++L + +N +    +   E + +L
Sbjct: 321 EL----PQNLKQLHVEYNPLREFPDI-PESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 148 NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKS 207
           N  +   ++      +L +L + +N++  +         L +L  S N LA VP      
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPE----L 322

Query: 208 LNHLLILNLNHNKISALHS 226
             +L  L++ +N +     
Sbjct: 323 PQNLKQLHVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 256 LEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAH 315
           L+++   L L    L+ +P+       +L  L    N +  +     E   +L SL++ +
Sbjct: 36  LDRQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP----ELPQSLKSLLVDN 87

Query: 316 NQLRTIP 322
           N L+ + 
Sbjct: 88  NNLKALS 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 94  YLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRV 153
            L + +N L +L         +  L    + L     + +  + + LK+L++  N L   
Sbjct: 288 ELNVSNNKLIELPALPP---RLERLIASFNHL-----AEVPELPQNLKQLHVEYNPLREF 339

Query: 154 PQTSLSKLENLR 165
           P      +E+LR
Sbjct: 340 PD-IPESVEDLR 350

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 157 SLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNL 216
             +     R+L+L   +I +IE           +D S N +  +       L  L  L +
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLV 70

Query: 217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQT 276
           N+N+I  +     Q L  L  L +  N L  +         K L  L +  N +T     
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130

Query: 277 SLSKLENLRKLELL 290
            L  +  + ++ +L
Sbjct: 131 RLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 277 SLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE 336
             +     R+L+L   +I +I E     L   D++  + N++R +    F  L  L +L 
Sbjct: 13  QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 69

Query: 337 LDGNHIHTVDP 347
           ++ N I  +  
Sbjct: 70  VNNNRICRIGE 80

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 4/208 (1%)

Query: 134 SSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNR----IALIEEGDFEGKALTQ 189
           S + +    L     +L  + + + S   +L K+E+  N     I      +       +
Sbjct: 25  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
           ++ + N L + P       N   +L  N         +    L  + +       +  IE
Sbjct: 85  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144

Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
            +SF GL  +   L L  N +  +   + +  +        +N +  +    F G     
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 204

Query: 310 SLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
            L ++  ++ ++P     +L  L +   
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 271 TRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP 323
             +P            L++   RI  +     E L  L +       L+ +P 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 214 LNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV 273
           L LN N I  +H+ AF G    E+     N L  +  D F G       L++    +  +
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIHSL 216

Query: 274 PQTSLSKLENLRKLELLHNR 293
           P   L  L+ LR     + +
Sbjct: 217 PSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 9/45 (20%), Positives = 21/45 (46%)

Query: 200 VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENK 244
           +P+      +  +IL+++  +I +L S   + L  L   + +  K
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 185 KALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK 220
                LD+S+  +  +PS  L++L  L   +  + K
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 7/216 (3%)

Query: 143 LNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDL----SQNSLA 198
                +++T +P        N  +L  +  ++ +I++G F G    +           + 
Sbjct: 13  FLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
                +     H + +   +N +           +   +L        L +      L+K
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
            L  +    N  T    + +        L L  N I  I    F G    +  +  +N L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 319 RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 354
             +P  VF        L++    IH++       L+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 225

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 28/150 (18%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVV 200
           + L+L   +LT +    L +L  +  L+L HNR+  +       + L  L  S N+L  V
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKL 260
                 +L  L  L L +N++                                     +L
Sbjct: 59  DGV--ANLPRLQELLLCNNRLQ-----------------------QSAAIQPLVSC-PRL 92

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELL 290
             LNL GN L +         E L  +  +
Sbjct: 93  VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 32/149 (21%)

Query: 190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE 249
           L L+   L V+    L+ L  +  L+L+HN++ AL       L  L  L + +   + +E
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALE 56

Query: 250 PDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD 309
                    +L+ L L  N L +                                   L 
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSA-----------------------AIQPLVSCPRLV 93

Query: 310 SLVLAHNQLRTIP---PRVFAHLPLLNSL 335
            L L  N L        R+   LP ++S+
Sbjct: 94  LLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 26/109 (23%)

Query: 261 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLD----------- 309
           + L+L   +LT +    L +L  +  L+L HNR+  +       L  L+           
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 310 -----------SLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVD 346
                       L+L +N+L+     +     P L  L L GN +   +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 187 LTQLDLSQNSL----AVVPSPALKSLNHLLILNLNHNKIS-----ALHSNAFQGLDTLEI 237
           L  L L+   +        +  L + + L  L+L++N +       L  +  Q    LE 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 238 LTIFENKLSLIEPDSFKGLEKKLKRL 263
           L +++   S    D  + LEK    L
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 140 LKRLNLGGNELTRVPQTSL-SKLENLRKLELLHNRI-----ALIEEGDFEGKALTQLDLS 193
           ++ L++   EL+      L   L+  + + L    +       I        AL +L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 194 QNSL----AVVPSPALKSLN-HLLILNLNHN 219
            N L           L++ +  +  L+L + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 205 LKSLNHLLILNLNHNKISALH----SNAFQGLDTLEILTIFENKLSLIEP----DSFKGL 256
            +  + L +L L    +S       +       +L  L +  N L         +S +  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 257 EKKLKRLNLGGNELTRVPQTSLSKL-ENLRKLELL 290
              L++L L     +   +  L  L ++   L ++
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 158 LSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVP--SPALKSLNHLLILN 215
           L        L    +  A +   +     L  L+LS N L  +   S  ++   +L ILN
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 216 LNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRL 263
           L+ N++ +           LE L +  N LS    D    +    +R 
Sbjct: 98  LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 242 ENKLSLIEPDSFKGLEKKLKRLNLGGNELT-RVPQTSLSKLENLRKLELLHNR 293
            N++    P     L K L  LN+  N L   +P      L+        +N+
Sbjct: 253 NNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 10/185 (5%)

Query: 141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG--KALTQLDLSQNSLA 198
             ++  G  L  +P+       +  +L L  N +  I      G    L +L+L +N L 
Sbjct: 11  TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 199 VVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEK 258
            +   A +  +H+  L L  NKI  + +  F GL  L+ L +++N++S + P SF+ L  
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 259 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQL 318
                               ++    + L     R     +     + ++    L H++ 
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK-----VRDVQIKDLPHSEF 182

Query: 319 RTIPP 323
           +    
Sbjct: 183 KCSSE 187

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 16/198 (8%)

Query: 138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSL 197
            +  +  LG   +T     S + L+ +  L+     I  I +G      LTQ++ S N L
Sbjct: 18  AEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 74

Query: 198 AVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLE 257
             +      +    +++N N        +N               +   L    +   LE
Sbjct: 75  TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 258 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQ 317
                ++             L+            +   + +      L  L+ L ++ N+
Sbjct: 135 LSSNTISDISALSGLTSLQQLN-----------FSSNQVTDLKPLANLTTLERLDISSNK 183

Query: 318 LRTIPPRVFAHLPLLNSL 335
           +  I     A L  L SL
Sbjct: 184 VSDISV--LAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 25/210 (11%)

Query: 147 GNELTRVPQT-----SLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVV 200
           G+E   VP       S        K  L    +   + + +    ++ Q+  + + +  V
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSV 61

Query: 201 PSPALKSLNHLLILNLNHNKIS-------------ALHSNAFQGLDTLEILTIFENKLSL 247
               ++ L ++  L LN NK++                        +          LSL
Sbjct: 62  Q--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 248 IEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHN 307
                                                +   L      + +     GL  
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 308 LDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 337
           L +L L+ N +  +     A L  L+ LEL
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLEL 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.88
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.86
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.6

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-32  Score=238.41  Aligned_cols=285  Identities=22%  Similarity=0.405  Sum_probs=245.1

Q ss_pred             cCCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCC
Q psy15002         45 QQCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNS  123 (357)
Q Consensus        45 ~~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~  123 (357)
                      ..||.     .|+|...    .++|++.+++++|..+       +..+++|++++|+|+.++...|... +|++|++++|
T Consensus         2 ~~~p~-----~c~c~~~----~~~C~~~~L~~lP~~l-------~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n   65 (305)
T d1xkua_           2 PVCPF-----RCQCHLR----VVQCSDLGLEKVPKDL-------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN   65 (305)
T ss_dssp             CCCCT-----TCEEETT----EEECTTSCCCSCCCSC-------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCC-----CCEecCC----EEEecCCCCCccCCCC-------CCCCCEEECcCCcCCCcChhHhhccccccccccccc
Confidence            47998     6999755    8999999999888543       4678999999999999999888776 9999999999


Q ss_pred             CcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCee--e
Q psy15002        124 SLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV--V  200 (357)
Q Consensus       124 ~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~--~  200 (357)
                      .+..+.+.+|..+ ++|++|++++|+++.++..   ..+.++.|++.+|.+..++...+.. ..+..++...+....  .
T Consensus        66 ~~~~i~~~~f~~l-~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          66 KISKISPGAFAPL-VKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             CCCCBCTTTTTTC-TTCCEEECCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             cccccchhhhhCC-CccCEecccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC
Confidence            9999999999888 6799999999999998864   3467899999999999888776655 677888888876543  3


Q ss_pred             CccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccC
Q psy15002        201 PSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSK  280 (357)
Q Consensus       201 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  280 (357)
                      ....+..+++|+.+++.+|.+..++...   .++|+.|++++|..+...+..|... +.++.|++++|.++++++..+.+
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGG
T ss_pred             CccccccccccCccccccCCccccCccc---CCccCEEECCCCcCCCCChhHhhcc-ccccccccccccccccccccccc
Confidence            3456788899999999999998875432   5799999999999999888888888 79999999999999999888999


Q ss_pred             CCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccC------CCCCCCcEEeCCCCccc--ccCcccccC
Q psy15002        281 LENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVF------AHLPLLNSLELDGNHIH--TVDPAAFSG  352 (357)
Q Consensus       281 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~------~~~~~L~~L~L~~N~l~--~~~~~~~~~  352 (357)
                      +++|++|++++|+++.++. .+..+++|+.|++++|+|+.++...|      ....+|+.|+|++|+|+  .++|..|..
T Consensus       218 l~~L~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         218 TPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             STTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             cccceeeeccccccccccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence            9999999999999999976 68889999999999999999876554      34578999999999886  688888877


Q ss_pred             cc
Q psy15002        353 LE  354 (357)
Q Consensus       353 l~  354 (357)
                      +.
T Consensus       297 ~~  298 (305)
T d1xkua_         297 VY  298 (305)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.6e-31  Score=228.57  Aligned_cols=203  Identities=33%  Similarity=0.489  Sum_probs=108.4

Q ss_pred             ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECC-CCCCeeeCccccCCCCcCceeecc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLS-QNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      +++|++++|+|+.+++.+|.++++|++|++++|.+..++...+.. ..++.+... .+.++.+++..|.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            444444444444444444444555555555555554444444433 344444332 344444545555555555555555


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      +|.+..+....+...++|+.+++++|+++.+++..|... ++++.|++++|.++.+++.++.++++|+.+++++|+++.+
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~-~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccc-cchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            555555545455555555555555555555555555444 4555555555555555555555555555555555555555


Q ss_pred             CcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       298 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      .+..|.++++|+.|++++|++.++++..|..+++|++|++++|+|.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            5555555555555555555555555555555555555555555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.4e-27  Score=209.82  Aligned_cols=251  Identities=24%  Similarity=0.403  Sum_probs=222.5

Q ss_pred             EEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCC
Q psy15002         93 FYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHN  172 (357)
Q Consensus        93 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  172 (357)
                      +.++-+++.++++|...+  .++++|++++|+++.+++.+|..+ ++|++|++++|.+..+++..|.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcc-ccccccccccccccccchhhhhCCCccCEecccCC
Confidence            467888899999998764  479999999999999999899888 67999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCc--ccCcccCCCCCCCCEEEccCCcCcccCC
Q psy15002        173 RIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKIS--ALHSNAFQGLDTLEILTIFENKLSLIEP  250 (357)
Q Consensus       173 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~  250 (357)
                      +++.+|...+  ..+..|++.+|.+..++...+.....+..+....|...  ......+..+++|+.+++++|.+..++.
T Consensus        90 ~l~~l~~~~~--~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_          90 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             ccCcCccchh--hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc
Confidence            9999987654  57999999999999999888888888888998887543  3335567888999999999999988754


Q ss_pred             CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCC
Q psy15002        251 DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLP  330 (357)
Q Consensus       251 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  330 (357)
                      ..    .++++.|++++|..+...+..+..++.++.|++++|.++++++..+.++++|++|+|++|+|+.+|. .+..++
T Consensus       168 ~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~-~l~~l~  242 (305)
T d1xkua_         168 GL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHK  242 (305)
T ss_dssp             SC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTTCS
T ss_pred             cc----CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccc-cccccc
Confidence            43    2689999999999999888889999999999999999999999999999999999999999999976 568899


Q ss_pred             CCcEEeCCCCcccccCcccccCc
Q psy15002        331 LLNSLELDGNHIHTVDPAAFSGL  353 (357)
Q Consensus       331 ~L~~L~L~~N~l~~~~~~~~~~l  353 (357)
                      +|+.|+|++|+|+.++...|...
T Consensus       243 ~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         243 YIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCS
T ss_pred             CCCEEECCCCccCccChhhccCc
Confidence            99999999999999998888643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=205.53  Aligned_cols=178  Identities=30%  Similarity=0.380  Sum_probs=135.8

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      +++++|++++|.|+.+++..|.++++|++|++++|.++.++.. ..+++|++|++++|+++.++. .+..+++|+.|+++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccc
Confidence            4688888888888888888888888888888888888877653 345777777887777776654 56777888888888


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      +|.+..+....+..+.+++.|++++|.++.+++..+..+ ++++.+++++|+++.+++..+..+++|++|+|++|+++.+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l-~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccccceeeccccccccccccccccccccceecccccccc-ccchhcccccccccccCccccccccccceeecccCCCccc
Confidence            888877777777777788888888888877777666666 6777788888877777777777777777777777777777


Q ss_pred             CcCcCCCCCCCCEeecCCCcCc
Q psy15002        298 EEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       298 ~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      +...+ .+++|+.|+|++|.+.
T Consensus       188 p~~~~-~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFF-GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTT-TTCCCSEEECCSCCBC
T ss_pred             ChhHC-CCCCCCEEEecCCCCC
Confidence            66443 4677777777777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=7e-27  Score=206.15  Aligned_cols=269  Identities=18%  Similarity=0.207  Sum_probs=219.3

Q ss_pred             CCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCc---CccccccCCCcccEEEecC-CCcceec
Q psy15002         54 SPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLP---KLTGFIFFGLDIRHLTIHN-SSLAVVE  129 (357)
Q Consensus        54 ~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~-~~l~~~~  129 (357)
                      .+|.|.+.    .|.|+...-              ..+++.|+++++++.   .+|.......+|++|++++ |.+.+..
T Consensus        32 d~C~~~w~----gv~C~~~~~--------------~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~i   93 (313)
T d1ogqa_          32 DCCNRTWL----GVLCDTDTQ--------------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI   93 (313)
T ss_dssp             CTTTTCST----TEEECCSSS--------------CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCC
T ss_pred             CCCCCcCC----CeEEeCCCC--------------cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccc
Confidence            46777665    578864321              246899999999987   4777777666999999986 7887655


Q ss_pred             CcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccc-cccCCCCCCCCCCeEECCCCCCeeeCccccCCC
Q psy15002        130 ESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQNSLAVVPSPALKSL  208 (357)
Q Consensus       130 ~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  208 (357)
                      +..+..+ ++|++|++++|++.++.+..+.++.+|+++++++|.+. .+|..+..++.++++++++|.+....+..+..+
T Consensus        94 P~~i~~L-~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l  172 (313)
T d1ogqa_          94 PPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             CGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             ccccccc-cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccc
Confidence            6677777 67999999999999999988999999999999999876 456677777999999999999987666677777


Q ss_pred             CcC-ceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEE
Q psy15002        209 NHL-LILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKL  287 (357)
Q Consensus       209 ~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  287 (357)
                      ..+ +.+++++|+++...+..+..+.. ..+++..+......+..+... ++++.+++++|.+...++ .+..+++|+.|
T Consensus       173 ~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L  249 (313)
T d1ogqa_         173 SKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLG-KVGLSKNLNGL  249 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTT-SCCSEEECCSSEECCBGG-GCCCCTTCCEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccccc-ccccccccccc
Confidence            665 88999999999887877766544 479999988887777666666 799999999999987664 47788999999


Q ss_pred             EccCCcCceeCcCcCCCCCCCCEeecCCCcCcc-cCcccCCCCCCCcEEeCCCCc-ccccC
Q psy15002        288 ELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNH-IHTVD  346 (357)
Q Consensus       288 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~N~-l~~~~  346 (357)
                      ++++|++++..|..++++++|+.|+|++|+|++ +|.  +.++++|+.+++++|+ +.|.|
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSSEEESTT
T ss_pred             cCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCccccCCC
Confidence            999999997666678899999999999999995 553  4778899999999997 56653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=201.86  Aligned_cols=237  Identities=26%  Similarity=0.422  Sum_probs=197.2

Q ss_pred             CCCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCC-cccEEEecCCC
Q psy15002         46 QCPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGL-DIRHLTIHNSS  124 (357)
Q Consensus        46 ~Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~  124 (357)
                      +||.     +|.|.. .....|.|++.+++++|..+       +..+++|+|++|+|++++...|.+. +|++|+++++.
T Consensus         1 ~cp~-----~C~C~~-~~~~~v~c~~~~L~~iP~~i-------p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~   67 (284)
T d1ozna_           1 PCPG-----ACVCYN-EPKVTTSCPQQGLQAVPVGI-------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV   67 (284)
T ss_dssp             CCCT-----TCEEEC-SSSCEEECCSSCCSSCCTTC-------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCC-----CCEEcC-CCCeEEEcCCCCCCccCCCC-------CCCCCEEECcCCcCCCCCHHHhhcccccccccccccc
Confidence            5998     799964 34678999999998887543       4667899999999999999888777 78999999999


Q ss_pred             cceecCcccccccccceEEEcc-CCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCc
Q psy15002        125 LAVVEESSLSSIGKKLKRLNLG-GNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPS  202 (357)
Q Consensus       125 l~~~~~~~~~~l~~~L~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~  202 (357)
                      +..+....+... ..++.+++. .+.++.+++..|.++++|++|++++|.+..++...+.. .+|+.+++++|+++.+++
T Consensus        68 l~~i~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~  146 (284)
T d1ozna_          68 LARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (284)
T ss_dssp             CCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccccccccc-ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh
Confidence            998888887776 457777664 56788888888889999999999999888777766654 788888999888888888


Q ss_pred             cccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCC
Q psy15002        203 PALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE  282 (357)
Q Consensus       203 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  282 (357)
                      ..|..+++|+.|++++|++..+++..|.++++|+.+++++|+++.+.+..|..+ ++++.|++++|.+.++++..+..++
T Consensus       147 ~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l-~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             hHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhh-hhccccccccccccccccccccccc
Confidence            888888888888888888888888888888888888888888888888888877 7888888888888888887888888


Q ss_pred             CCcEEEccCCcCcee
Q psy15002        283 NLRKLELLHNRIALI  297 (357)
Q Consensus       283 ~L~~L~l~~n~l~~~  297 (357)
                      +|++|++++|.+...
T Consensus       226 ~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         226 ALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             ccCEEEecCCCCCCC
Confidence            888888888877643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=3.1e-25  Score=195.42  Aligned_cols=238  Identities=25%  Similarity=0.315  Sum_probs=200.7

Q ss_pred             cccEEEecCCCccee--cCcccccccccceEEEccC-CcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCe
Q psy15002        114 DIRHLTIHNSSLAVV--EESSLSSIGKKLKRLNLGG-NELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQ  189 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~--~~~~~~~l~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~  189 (357)
                      ++++|+++++.+...  .+..+..+ ++|++|++++ |.+++..|..+.++++|++|++++|++..+++..+. ...|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcC-ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            799999999988753  34667777 6799999986 788854445699999999999999999987766544 489999


Q ss_pred             EECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCC-CEEEccCCcCcccCCCccccccccccEEEccCC
Q psy15002        190 LDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTL-EILTIFENKLSLIEPDSFKGLEKKLKRLNLGGN  268 (357)
Q Consensus       190 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  268 (357)
                      ++++.|.+....+..+..++.++.+++++|.+....+..+..+..+ +.+++++|++++..+..+..+  ....+++.++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--~~~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--CCSEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence            9999999988877889999999999999999987777777777765 899999999998888877775  5668999999


Q ss_pred             cCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcc
Q psy15002        269 ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA  348 (357)
Q Consensus       269 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~  348 (357)
                      ......+..+..+++++.+++++|.+...++ .+..+++|+.|+|++|++++..|..+.++++|++|+|++|+++|..|+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9888887888899999999999999987765 577789999999999999965555578999999999999999986664


Q ss_pred             cccCcccc
Q psy15002        349 AFSGLEAK  356 (357)
Q Consensus       349 ~~~~l~~l  356 (357)
                       +++++.|
T Consensus       287 -~~~L~~L  293 (313)
T d1ogqa_         287 -GGNLQRF  293 (313)
T ss_dssp             -STTGGGS
T ss_pred             -cccCCCC
Confidence             4555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-25  Score=188.33  Aligned_cols=199  Identities=19%  Similarity=0.239  Sum_probs=127.1

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCcccc-ccCCCCCC-CCCCeEECC-CCCCeeeCccccCCCCcCceee
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL-IEEGDFEG-KALTQLDLS-QNSLAVVPSPALKSLNHLLILN  215 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~-~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~  215 (357)
                      ++++|++++|.++.++..+|.++++|++|++++|.+.. +++..|.. +.++++.+. .|.+..+++..|.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            35555555555555555555556666666666655543 34444332 555555544 3556666666677777777777


Q ss_pred             cccccCcccCccc-CCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcE-EEccCCc
Q psy15002        216 LNHNKISALHSNA-FQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRK-LELLHNR  293 (357)
Q Consensus       216 l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~  293 (357)
                      +++|++....+.. +..+..+..+...++.+..+....|.++...++.|++++|+++.++...+.. .++++ +.+++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc-hhhhccccccccc
Confidence            7777776553322 2234455555566667777776666665457777888888888777655443 44444 4567777


Q ss_pred             CceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCC
Q psy15002        294 IALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD  338 (357)
Q Consensus       294 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  338 (357)
                      +++++...|.++++|+.|++++|+++.+|+..|.++++|+.+++.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            888887778888888888888888888887777777766666553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=8.3e-24  Score=191.25  Aligned_cols=180  Identities=33%  Similarity=0.434  Sum_probs=117.7

Q ss_pred             CCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEc
Q psy15002        161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTI  240 (357)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  240 (357)
                      +++++.+++++|.++.+++ ....++|++|++++|+++.++  .+..+++|+.+++++|.++.+.+  +..+++|+.|++
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  270 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  270 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeec
Confidence            3444444444444444332 122245566666666655543  34555666666666666655532  555666666666


Q ss_pred             cCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002        241 FENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       241 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      ++++++.+.+  +... +.++.+++.+|.++.+.  .+..+++++.|++++|+++++++  +..+++|+.|++++|++++
T Consensus       271 ~~~~l~~~~~--~~~~-~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         271 GANQISNISP--LAGL-TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CSSCCCCCGG--GTTC-TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             cCcccCCCCc--cccc-ccccccccccccccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC
Confidence            6666655432  3333 45666666666666543  36677889999999999988764  6778999999999999998


Q ss_pred             cCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        321 IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       321 ~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      ++.  +.++++|++|++++|+++++++  +.++++|
T Consensus       344 l~~--l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L  375 (384)
T d2omza2         344 VSS--LANLTNINWLSAGHNQISDLTP--LANLTRI  375 (384)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             Chh--HcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            764  6788999999999999999875  5665543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=181.03  Aligned_cols=198  Identities=31%  Similarity=0.380  Sum_probs=178.0

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCC-CCCCCeEECCCCCCeeeCccccCCCCcCceeec
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFE-GKALTQLDLSQNSLAVVPSPALKSLNHLLILNL  216 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  216 (357)
                      ..+.+++.++++++.+|.+ +  .+++++|+|++|.++.+++..|. +++|++|++++|+++.++.  +..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~-l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCeeCcC-c--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccccc
Confidence            3467789999999999764 3  25799999999999999987665 4999999999999998874  578999999999


Q ss_pred             ccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCce
Q psy15002        217 NHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIAL  296 (357)
Q Consensus       217 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  296 (357)
                      ++|++... +..+..+++|+.|++++|.+..+....+..+ .+++.|++++|.++.+++..+..++.++.+++++|+++.
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccccc-ccccccccccccccccccccceeeccccccc-cccccccccccccceeccccccccccchhcccccccccc
Confidence            99999887 4568889999999999999999988888777 799999999999999998888999999999999999999


Q ss_pred             eCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCccc
Q psy15002        297 IEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       297 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~  343 (357)
                      +++..|..+++|++|+|++|+|+.+|..+ ..+++|+.|+|++|+|.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~-~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCcccChhH-CCCCCCCEEEecCCCCC
Confidence            99999999999999999999999998876 46899999999999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=9.3e-23  Score=184.26  Aligned_cols=187  Identities=29%  Similarity=0.425  Sum_probs=160.6

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      +++.+++++|.++.+.+  +...++|++|++++|.++.++ .+...++|+.+++++|.++.+++  +..+++|+++++++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  272 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  272 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--ccccccCCEeeccC
Confidence            46677777777777654  567889999999999999875 34556899999999999998774  78899999999999


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      +++..+.+  +..++.++.+++..|+++.+.  .+... ++++.|++++|.++++++  +..+++|++|++++|+++.++
T Consensus       273 ~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~-~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         273 NQISNISP--LAGLTALTNLELNENQLEDIS--PISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             cccCCCCc--ccccccccccccccccccccc--ccchh-cccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh
Confidence            99987743  778899999999999998753  35555 789999999999998863  788999999999999999876


Q ss_pred             cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCc
Q psy15002        299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH  341 (357)
Q Consensus       299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~  341 (357)
                        .+.++++|++|++++|+++++++  +.++++|+.|+|++|.
T Consensus       346 --~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         346 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             --GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             --hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence              47889999999999999999887  7899999999999984

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-22  Score=168.49  Aligned_cols=214  Identities=19%  Similarity=0.255  Sum_probs=178.7

Q ss_pred             ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCee-eCccccCCCCcCceeecc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAV-VPSPALKSLNHLLILNLN  217 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~  217 (357)
                      .+.++.++.+++.+|...+   +++++|++++|.++.++...|.. ++|++|++++|.+.. +++..|.+++.++++.+.
T Consensus        10 ~~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4678888888888886532   57999999999999999987764 999999999998865 677789999999999876


Q ss_pred             c-ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCC-CCcEEEccCCcCc
Q psy15002        218 H-NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLE-NLRKLELLHNRIA  295 (357)
Q Consensus       218 ~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~  295 (357)
                      . |.+....+..|.++++|+.+++++|++.......+......+..+...++.+..++...+..++ .++.|++++|+++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            4 6788888888999999999999999998775544333226677777888899998877777664 7999999999999


Q ss_pred             eeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        296 LIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       296 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      .++...+......+.+++++|+++.+++..|.++++|+.|+|++|+++.+++..|.++++|
T Consensus       167 ~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         167 EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence            9998777644334455678999999999999999999999999999999999999998765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=5.8e-22  Score=161.53  Aligned_cols=110  Identities=31%  Similarity=0.460  Sum_probs=76.0

Q ss_pred             ccceEEEccCCcCce-eChhhhcCCCCCcEEeccCCccccccCCCCCC-CCCCeEECCCCCCeeeCccccCCCCcCceee
Q psy15002        138 KKLKRLNLGGNELTR-VPQTSLSKLENLRKLELLHNRIALIEEGDFEG-KALTQLDLSQNSLAVVPSPALKSLNHLLILN  215 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  215 (357)
                      +++++|++++|.|+. ++...|.++++|++|++++|.++.+++..+.. ++|++|++++|+++.+++++|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            346667777777653 55556677777777777777777666555543 6666677777777777666777777777777


Q ss_pred             cccccCcccCcccCCCCCCCCEEEccCCcCcc
Q psy15002        216 LNHNKISALHSNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       216 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      |++|+|+.++++.|..+++|++|++++|.+..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccCHHHhcCCccccccccccccccc
Confidence            77777777777777777777777777776543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=3.4e-20  Score=155.08  Aligned_cols=186  Identities=27%  Similarity=0.403  Sum_probs=153.0

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      .+|++|++.+|+++.+.  .+.++++|++|++++|.++.+++ +...++++++++++|.++.++  .+.++++|+.++++
T Consensus        41 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred             CCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc--cccccccccccccc
Confidence            57999999999998884  38889999999999999887764 555688999999999888775  47788999999999


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      ++......  .+...+.++.+.++++.+....  .+... ++++.|++++|.+....+  +.++++|++|++++|+++++
T Consensus       116 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~-~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         116 STQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             TSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc--hhccccchhhhhchhhhhchhh--hhccc-cccccccccccccccchh--hcccccceecccCCCccCCC
Confidence            88776653  3566788999999988876643  24444 789999999998876653  78889999999999999887


Q ss_pred             CcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCC
Q psy15002        298 EEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG  339 (357)
Q Consensus       298 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  339 (357)
                      ++  ++++++|+.|++++|+++++++  ++++++|+.|++++
T Consensus       189 ~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            64  6778999999999999999886  78899999999863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.1e-19  Score=151.98  Aligned_cols=199  Identities=25%  Similarity=0.414  Sum_probs=166.4

Q ss_pred             ceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccc
Q psy15002        140 LKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHN  219 (357)
Q Consensus       140 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  219 (357)
                      +..++++.++++++.  .+..+.+|++|++.+|.++.++ ++..+++|++|++++|.++.+.+  +..+++++.+++++|
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            445667778877764  3577889999999999999984 56777999999999999998764  889999999999999


Q ss_pred             cCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCc
Q psy15002        220 KISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEE  299 (357)
Q Consensus       220 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  299 (357)
                      .++.+.  .+..+++|+.++++++......+  +... +.+..+.++++.+....+  +..+++|++|++++|.++...+
T Consensus        96 ~~~~i~--~l~~l~~L~~l~l~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~  168 (227)
T d1h6ua2          96 PLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGL-SNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP  168 (227)
T ss_dssp             CCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             cccccc--cccccccccccccccccccccch--hccc-cchhhhhchhhhhchhhh--hccccccccccccccccccchh
Confidence            988763  47889999999999998776533  3344 689999999998876543  6778999999999999987654


Q ss_pred             CcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        300 GDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       300 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                        ++++++|+.|++++|+++++++  +.++++|+.|+|++|+++++++  ++++++|
T Consensus       169 --l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L  219 (227)
T d1h6ua2         169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL  219 (227)
T ss_dssp             --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred             --hcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCC
Confidence              7789999999999999999876  6889999999999999999875  5666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=2e-20  Score=152.30  Aligned_cols=175  Identities=24%  Similarity=0.270  Sum_probs=110.1

Q ss_pred             cEEeccCCccccccCCCCCCCCCCeEECCCCCCee-eCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCC
Q psy15002        165 RKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAV-VPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFEN  243 (357)
Q Consensus       165 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  243 (357)
                      +.++.++++++.+|.++.  +++++|++++|+|+. ++...|.++++|+.|++++|.+..+.++.+..+++|+.|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            456666666666666553  456666666666654 44556666777777777777777776777777777777777777


Q ss_pred             cCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc
Q psy15002        244 KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP  323 (357)
Q Consensus       244 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  323 (357)
                      +++.+++..|.++ ++|+.|+|++|+++.+++.+|..+++|++|++++|.+.......+ -...++.+.+..+.++...+
T Consensus        89 ~l~~l~~~~F~~l-~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCC-CcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCC
Confidence            7777776677666 677777777777777777677777777777777776654332111 01234455555555553322


Q ss_pred             ccCCCCCCCcEEeCCCCcccccC
Q psy15002        324 RVFAHLPLLNSLELDGNHIHTVD  346 (357)
Q Consensus       324 ~~~~~~~~L~~L~L~~N~l~~~~  346 (357)
                         ..+..++.++|+.|.++-..
T Consensus       167 ---~~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         167 ---SKVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             ---TTTTTSBGGGSCTTTCCCCC
T ss_pred             ---hhhcCCEeeecCHhhCcCCC
Confidence               33455666677777765443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=1.6e-18  Score=154.12  Aligned_cols=258  Identities=17%  Similarity=0.244  Sum_probs=157.6

Q ss_pred             EEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEc
Q psy15002         66 DILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNL  145 (357)
Q Consensus        66 ~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~l  145 (357)
                      .++++..+++++|..        ++++++|++++|+|+++|...   .+|+.|++.+|.++.+..     +++.|++|++
T Consensus        42 ~LdLs~~~L~~lp~~--------~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-----lp~~L~~L~L  105 (353)
T d1jl5a_          42 ELELNNLGLSSLPEL--------PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-----LPPLLEYLGV  105 (353)
T ss_dssp             EEECTTSCCSCCCSC--------CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-----CCTTCCEEEC
T ss_pred             EEEeCCCCCCCCCCC--------CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-----hccccccccc
Confidence            778888888777632        357889999999999888642   378999999998887652     3457999999


Q ss_pred             cCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccC
Q psy15002        146 GGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALH  225 (357)
Q Consensus       146 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  225 (357)
                      ++|.+..++.  +.++++|++|+++++.++..+...   ..+..+.+..+.....  ..+..++.++.+.+.+|......
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccccccccc--hhhhccceeecccccccccccccc---ccccchhhcccccccc--ccccccccceecccccccccccc
Confidence            9999988874  578899999999988876554432   2223333332222111  11222333333333333221110


Q ss_pred             ------------------cccCCCCCCCCEEEccCCcCcccCCCc---------------cccccccccEEEccCCcCcc
Q psy15002        226 ------------------SNAFQGLDTLEILTIFENKLSLIEPDS---------------FKGLEKKLKRLNLGGNELTR  272 (357)
Q Consensus       226 ------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~---------------~~~~~~~L~~L~l~~n~l~~  272 (357)
                                        ...+..++.|+.+++++|....+....               .......+...++..+.+..
T Consensus       179 ~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         179 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG  258 (353)
T ss_dssp             CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                              011233445555555555433221100               00011233344443333322


Q ss_pred             cCc----------------ccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEe
Q psy15002        273 VPQ----------------TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLE  336 (357)
Q Consensus       273 ~~~----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  336 (357)
                      +..                .....+++|++|++++|+++.++.    .+++|+.|++++|+|+.+|.    .+++|+.|+
T Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~  330 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLH  330 (353)
T ss_dssp             ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEE
T ss_pred             cccccchhcccccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc----ccCCCCEEE
Confidence            110                111235789999999999999875    26899999999999999875    246899999


Q ss_pred             CCCCcccccCcccccCccc
Q psy15002        337 LDGNHIHTVDPAAFSGLEA  355 (357)
Q Consensus       337 L~~N~l~~~~~~~~~~l~~  355 (357)
                      +++|+++.++ +...+++.
T Consensus       331 L~~N~L~~lp-~~~~~L~~  348 (353)
T d1jl5a_         331 VEYNPLREFP-DIPESVED  348 (353)
T ss_dssp             CCSSCCSSCC-CCCTTCCE
T ss_pred             CcCCcCCCCC-ccccccCe
Confidence            9999999886 34455554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.2e-19  Score=146.89  Aligned_cols=161  Identities=30%  Similarity=0.465  Sum_probs=79.8

Q ss_pred             CCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEc
Q psy15002        161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTI  240 (357)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  240 (357)
                      ++++++|+++++.++.++ ++..+++|++|++++|+++.+++  +.++++|++|++++|.+..++  .+.+++.|+.|++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            344555555555444432 12223444444444444444432  445555555555555554442  2445555555555


Q ss_pred             cCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcc
Q psy15002        241 FENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRT  320 (357)
Q Consensus       241 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  320 (357)
                      +++.+....  .+..+ ++|+.|++++|.+..++  .+..+++|++|++.+|+++++++  ++++++|+.|++++|++++
T Consensus       114 ~~~~~~~~~--~~~~l-~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         114 FNNQITDID--PLKNL-TNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCCCCG--GGTTC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--ccchh-hhhHHhhhhhhhhcccc--cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCC
Confidence            555544432  23333 45555555555555443  24455555566665555555432  4455566666666666555


Q ss_pred             cCcccCCCCCCCcEE
Q psy15002        321 IPPRVFAHLPLLNSL  335 (357)
Q Consensus       321 ~~~~~~~~~~~L~~L  335 (357)
                      ++.  +.++++|+.|
T Consensus       187 i~~--l~~L~~L~~L  199 (199)
T d2omxa2         187 ISV--LAKLTNLESL  199 (199)
T ss_dssp             CGG--GGGCTTCSEE
T ss_pred             Ccc--ccCCCCCCcC
Confidence            543  3445555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.9e-19  Score=148.52  Aligned_cols=163  Identities=31%  Similarity=0.434  Sum_probs=93.3

Q ss_pred             cceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccc
Q psy15002        139 KLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNH  218 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  218 (357)
                      +|++|++++|.++.+..  +..+++|++|++++|.++.+++                         +..+++|++|++++
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~-------------------------~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-------------------------LANLKNLGWLFLDE   99 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-------------------------GTTCTTCCEEECCS
T ss_pred             CccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc-------------------------cccCcccccccccc
Confidence            45555555555555432  4455555555555555544432                         34455555555555


Q ss_pred             ccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeC
Q psy15002        219 NKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIE  298 (357)
Q Consensus       219 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  298 (357)
                      |+++.++  .+..+++|+.|++++|.+..+.  .+..+ +.++.+++++|.++...  .+..+++|+.+++++|++++++
T Consensus       100 n~i~~l~--~l~~l~~L~~L~l~~~~~~~~~--~l~~l-~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~  172 (210)
T d1h6ta2         100 NKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHL-PQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV  172 (210)
T ss_dssp             SCCCCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGC-TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccc--cccccccccccccccccccccc--ccccc-ccccccccccccccccc--cccccccccccccccccccccc
Confidence            5555542  2455556666666666554432  33444 55666666666665443  2445666777777777766654


Q ss_pred             cCcCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCC
Q psy15002        299 EGDFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG  339 (357)
Q Consensus       299 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  339 (357)
                      +  +.++++|+.|++++|+++++++  +.++++|+.|+|++
T Consensus       173 ~--l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 P--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEE
T ss_pred             c--ccCCCCCCEEECCCCCCCCChh--hcCCCCCCEEEccC
Confidence            3  5566777777777777776653  56677777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.2e-18  Score=143.71  Aligned_cols=162  Identities=31%  Similarity=0.459  Sum_probs=102.9

Q ss_pred             cccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECC
Q psy15002        114 DIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLS  193 (357)
Q Consensus       114 ~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  193 (357)
                      .+++|+++++.++.+.+  +..+ ++|++|++++|.++++++  +.++++|++|++++|+++.++. +..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~~l-~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCchh--HhhC-CCCCEEeCCCccccCccc--cccCcccccccccccccccccc-ccccccccccccc
Confidence            78999999999988764  4444 689999999999999875  6889999999999999987763 4445667777777


Q ss_pred             CCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCccc
Q psy15002        194 QNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRV  273 (357)
Q Consensus       194 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  273 (357)
                      +|.+..++  .+.++++++.+++++|.+....  .+..+++|+.+++++|+++++.+  +..+ ++|+.|++++|.++.+
T Consensus       121 ~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l-~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         121 HNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCBC
T ss_pred             cccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc--ccCC-CCCCEEECCCCCCCCC
Confidence            66665543  3455566666666666554432  23344555555555555544321  3333 4444555544444443


Q ss_pred             CcccccCCCCCcEEEcc
Q psy15002        274 PQTSLSKLENLRKLELL  290 (357)
Q Consensus       274 ~~~~~~~l~~L~~L~l~  290 (357)
                      +  .+..+++|++|+++
T Consensus       194 ~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 R--ALAGLKNLDVLELF  208 (210)
T ss_dssp             G--GGTTCTTCSEEEEE
T ss_pred             h--hhcCCCCCCEEEcc
Confidence            3  24444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.8e-18  Score=141.30  Aligned_cols=160  Identities=25%  Similarity=0.398  Sum_probs=129.7

Q ss_pred             ccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        138 KKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       138 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      .++++|++++|.++.+..  +..+++|++|++++|.++.+++ +..+++|++|++++|.+..++  .+.++++|+.++++
T Consensus        40 ~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~  114 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  114 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             cCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccccc--cccccccccccccc
Confidence            468888888888888753  7788889999999998887765 556688999999988888776  37788999999999


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCcee
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALI  297 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  297 (357)
                      ++....+.  .+..+++|+.|++++|++..++  .+... ++++.|++.+|.++.+++  +.++++|++|++++|+++++
T Consensus       115 ~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~-~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         115 NNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGL-TSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccc--ccchhhhhHHhhhhhhhhcccc--ccccc-ccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCC
Confidence            88877653  4678899999999999887653  35555 789999999999988763  78889999999999999887


Q ss_pred             CcCcCCCCCCCCEe
Q psy15002        298 EEGDFEGLHNLDSL  311 (357)
Q Consensus       298 ~~~~~~~~~~L~~L  311 (357)
                      +.  ++++++|++|
T Consensus       188 ~~--l~~L~~L~~L  199 (199)
T d2omxa2         188 SV--LAKLTNLESL  199 (199)
T ss_dssp             GG--GGGCTTCSEE
T ss_pred             cc--ccCCCCCCcC
Confidence            53  6678888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=5.6e-16  Score=137.31  Aligned_cols=242  Identities=21%  Similarity=0.224  Sum_probs=169.7

Q ss_pred             ceEEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEec
Q psy15002         90 LIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLEL  169 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l  169 (357)
                      ..+++|+++++.++.+|..   ..+|++|++++|+++.++..     ..+|+.|++++|.++.++.  +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            4567999999999999863   23799999999999987632     2579999999999988763  1  257999999


Q ss_pred             cCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccC
Q psy15002        170 LHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIE  249 (357)
Q Consensus       170 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  249 (357)
                      ++|.++.+|. ....++|++|+++++.+...+.    ....+..+.+.++....  ...+..++.++.+.+++|......
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             cccccccccc-hhhhccceeecccccccccccc----ccccccchhhccccccc--cccccccccceecccccccccccc
Confidence            9999999985 4566999999999998876654    24567777777665543  344667788888888887654432


Q ss_pred             C------------------CccccccccccEEEccCCcCcccCccc----------------ccCCCCCcEEEccCCcCc
Q psy15002        250 P------------------DSFKGLEKKLKRLNLGGNELTRVPQTS----------------LSKLENLRKLELLHNRIA  295 (357)
Q Consensus       250 ~------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~----------------~~~l~~L~~L~l~~n~l~  295 (357)
                      .                  ..+..+ +.++.+++++|....++...                ....+.+...++..+.+.
T Consensus       179 ~~~~~~~~l~~~~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         179 DLPLSLESIVAGNNILEELPELQNL-PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CCCTTCCEEECCSSCCSSCCCCTTC-TTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1                  112233 67899999988776554210                001123344444443333


Q ss_pred             eeCcC----------------cCCCCCCCCEeecCCCcCcccCcccCCCCCCCcEEeCCCCcccccCcccccCcccc
Q psy15002        296 LIEEG----------------DFEGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEAK  356 (357)
Q Consensus       296 ~~~~~----------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~l  356 (357)
                      .+...                ....+++|++|++++|+++.+|.    .+++|+.|+|++|+++.++ +...+++.|
T Consensus       258 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~-~~~~~L~~L  329 (353)
T d1jl5a_         258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVP-ELPQNLKQL  329 (353)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC-CCCTTCCEE
T ss_pred             ccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCccc-cccCCCCEE
Confidence            22210                01225789999999999999885    3578999999999999886 445556543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.6e-17  Score=126.37  Aligned_cols=127  Identities=21%  Similarity=0.314  Sum_probs=70.3

Q ss_pred             CCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCc
Q psy15002        206 KSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLR  285 (357)
Q Consensus       206 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  285 (357)
                      .+..++++|++++|+|+.++ ..+..+++|+.|++++|+++.++  .+..+ ++|+.|++++|.++.+++..+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l-~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLL-RRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCC-SSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccC-cchhhhhcccccccCCCccccccccccc
Confidence            34445555555555555552 23344555555555555555542  23444 4566666666666555554444556666


Q ss_pred             EEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCc---ccCCCCCCCcEEe
Q psy15002        286 KLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPP---RVFAHLPLLNSLE  336 (357)
Q Consensus       286 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~  336 (357)
                      +|++++|+++.++. ..+..+++|+.|++++|.++..+.   ..+..+|+|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666666655543 345556666666666666665553   2345566676665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2e-16  Score=124.27  Aligned_cols=84  Identities=25%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecccccCcccCcccCCCCCCCCEEEc
Q psy15002        161 LENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTI  240 (357)
Q Consensus       161 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  240 (357)
                      ..++++|++++|+|+.++......++|++|++++|+++.++  .+..+++|++|++++|+++.+++..+..+++|+.|++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            33444444444444443321112233333333333333332  1333344444444444444333333333334444444


Q ss_pred             cCCcCc
Q psy15002        241 FENKLS  246 (357)
Q Consensus       241 ~~n~l~  246 (357)
                      ++|+++
T Consensus        95 ~~N~i~  100 (162)
T d1a9na_          95 TNNSLV  100 (162)
T ss_dssp             CSCCCC
T ss_pred             cccccc
Confidence            444333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=5.2e-16  Score=116.03  Aligned_cols=104  Identities=25%  Similarity=0.292  Sum_probs=66.4

Q ss_pred             eEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeeccccc
Q psy15002        141 KRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLNHNK  220 (357)
Q Consensus       141 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  220 (357)
                      ++|++++|+++.++.  +.++++|++|++++|.++.+|+.+..+++|++|++++|+++.++  .+..+++|+++++++|+
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC--ccccccccCeEECCCCc
Confidence            467777777776653  66777777777777777777665555566666666666666654  35666666666666666


Q ss_pred             CcccCc-ccCCCCCCCCEEEccCCcCccc
Q psy15002        221 ISALHS-NAFQGLDTLEILTIFENKLSLI  248 (357)
Q Consensus       221 l~~~~~-~~l~~l~~L~~L~L~~n~l~~~  248 (357)
                      ++.++. ..+..+++|+.|++++|.++..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            665532 3455566666666666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.3e-15  Score=111.60  Aligned_cols=102  Identities=25%  Similarity=0.409  Sum_probs=48.4

Q ss_pred             EEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCC
Q psy15002        237 ILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHN  316 (357)
Q Consensus       237 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  316 (357)
                      .|++++|+++.++  .+..+ ++|+.|++++|.++.+++ .+..+++|+.|++++|.++.++.  +..+++|+.|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l-~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGG-TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccC-CCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc--cccccccCeEECCCC
Confidence            3444555444432  13333 445555555555554442 24444555555555555554432  444555555555555


Q ss_pred             cCcccCc-ccCCCCCCCcEEeCCCCcccc
Q psy15002        317 QLRTIPP-RVFAHLPLLNSLELDGNHIHT  344 (357)
Q Consensus       317 ~l~~~~~-~~~~~~~~L~~L~L~~N~l~~  344 (357)
                      +++.++. ..+..+++|+.+++++|++++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            5554443 233445555555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-15  Score=116.11  Aligned_cols=115  Identities=23%  Similarity=0.303  Sum_probs=91.5

Q ss_pred             CCCCCCCCCceeccccCCeEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCccccccCCCcccEEEecCC-Cc
Q psy15002         47 CPPHNEISPCQCSVKKNGLDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNS-SL  125 (357)
Q Consensus        47 Cp~~~~~~~C~C~~~~~~~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~-~l  125 (357)
                      ||+     .|.|....   .+.|...++.++|.                            ......++++|++.++ .+
T Consensus         1 CP~-----~C~c~~~~---~l~c~~~~~~~~p~----------------------------~l~~l~~l~~L~l~~n~~l   44 (156)
T d2ifga3           1 CPD-----ACCPHGSS---GLRCTRDGALDSLH----------------------------HLPGAENLTELYIENQQHL   44 (156)
T ss_dssp             CCS-----SSCCSSSS---CEECCSSCCCTTTT----------------------------TSCSCSCCSEEECCSCSSC
T ss_pred             CcC-----CCCcCCCC---eEEecCCCCccCcc----------------------------cccCccccCeeecCCCccc
Confidence            888     69997654   68887766554442                            2222336778888655 48


Q ss_pred             ceecCcccccccccceEEEccCCcCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCe
Q psy15002        126 AVVEESSLSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLA  198 (357)
Q Consensus       126 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~  198 (357)
                      +.++..+|.++ ++|+.|++++|+|+.+++++|.++++|++|+|++|+++.++.+++...+|++|++++|.+.
T Consensus        45 ~~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          45 QHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccCchhhccc-cccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            88888888877 5799999999999999999999999999999999999999999888888999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.9e-16  Score=133.30  Aligned_cols=209  Identities=19%  Similarity=0.195  Sum_probs=118.8

Q ss_pred             cceEEEccCCcCceeC-hhhhcCCCCCcEEeccCCccc-cccCCCCCCCCCCeEECCCC-CCeeeCcc-ccCCCCcCcee
Q psy15002        139 KLKRLNLGGNELTRVP-QTSLSKLENLRKLELLHNRIA-LIEEGDFEGKALTQLDLSQN-SLAVVPSP-ALKSLNHLLIL  214 (357)
Q Consensus       139 ~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L  214 (357)
                      +|++|++++|.++... ...+.++++|++|+++++.++ .....+...++|++|+++++ .+++.... ...++++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            5777777777665321 233566777777777777665 22333344567777777774 44432211 12456778888


Q ss_pred             eccccc-CcccC-cccC-CCCCCCCEEEccCCc--CcccCCCcc-ccccccccEEEccCC-cCcccCcccccCCCCCcEE
Q psy15002        215 NLNHNK-ISALH-SNAF-QGLDTLEILTIFENK--LSLIEPDSF-KGLEKKLKRLNLGGN-ELTRVPQTSLSKLENLRKL  287 (357)
Q Consensus       215 ~l~~n~-l~~~~-~~~l-~~l~~L~~L~L~~n~--l~~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  287 (357)
                      +++++. ++... ...+ ...++|+.|+++++.  ++......+ ... ++|+.|++++| .+++.....+..+++|++|
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~-~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             ccccccccccccchhhhcccccccchhhhccccccccccccccccccc-ccccccccccccCCCchhhhhhcccCcCCEE
Confidence            887753 32211 0111 223578888887652  332212222 223 67888888775 4555444556777888888


Q ss_pred             EccCC-cCceeCcCcCCCCCCCCEeecCCCcCcccC-cccCCCCCCCcEEeCCCCcccccCcccccC
Q psy15002        288 ELLHN-RIALIEEGDFEGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSG  352 (357)
Q Consensus       288 ~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~N~l~~~~~~~~~~  352 (357)
                      +++++ .+++.....++.+++|+.|+++++ ++.-. ......+|+|+   +..++++++.+..+++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            88884 566554455667788888888876 33211 11123345544   4566777665555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.9e-16  Score=143.20  Aligned_cols=106  Identities=21%  Similarity=0.277  Sum_probs=72.6

Q ss_pred             eEEecccCChhhHHHHHhhhccCCCceEEEEEecCCCCcCcc-----ccccCCCcccEEEecCCCcceecCccc----cc
Q psy15002         65 LDILCEFTDNQKIQHTMTTLKSKSGLIIFYLKLRHNNLPKLT-----GFIFFGLDIRHLTIHNSSLAVVEESSL----SS  135 (357)
Q Consensus        65 ~~~~C~~~~l~~i~~~~~~~~~~~~~~l~~L~l~~~~i~~l~-----~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~  135 (357)
                      .++.|....-..+...+..+     ..+++|+|++|.++...     .......+|++|++++|.++......+    ..
T Consensus         7 ld~~~~~i~~~~~~~l~~~l-----~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           7 LDIQCEELSDARWAELLPLL-----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEESCCCCHHHHHHHHHHH-----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             EEeeCCcCChHHHHHHHHhC-----CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            57778777665555555444     34568999999887432     222344589999999998864322222    11


Q ss_pred             ccccceEEEccCCcCceeC----hhhhcCCCCCcEEeccCCccc
Q psy15002        136 IGKKLKRLNLGGNELTRVP----QTSLSKLENLRKLELLHNRIA  175 (357)
Q Consensus       136 l~~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~  175 (357)
                      ...+|++|++++|.++...    ...+..+++|++|++++|.++
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            1246999999999998654    234677899999999999764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=107.13  Aligned_cols=107  Identities=23%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             cCceeecccccCcccCcccCCCCCCCCEEEccCC-cCcccCCCccccccccccEEEccCCcCcccCcccccCCCCCcEEE
Q psy15002        210 HLLILNLNHNKISALHSNAFQGLDTLEILTIFEN-KLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLE  288 (357)
Q Consensus       210 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  288 (357)
                      ..+.++.+++.+... +..+.++++|+.|++++| .++.+++..|.++ ++|+.|++++|+++.+++.+|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccc-cccCcceeeccccCCccccccccccccccee
Confidence            345566666666655 334556667777777554 3666666666666 5677777777777776666666667777777


Q ss_pred             ccCCcCceeCcCcCCCCCCCCEeecCCCcCc
Q psy15002        289 LLHNRIALIEEGDFEGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       289 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  319 (357)
                      |++|+++.++...+... +|+.|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc
Confidence            77777776666666533 5667777776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=2.3e-15  Score=133.38  Aligned_cols=186  Identities=21%  Similarity=0.202  Sum_probs=109.3

Q ss_pred             cCCCCCcEEeccCCcccc-----ccCCCCCCCCCCeEECCCCCCeeeCc-------------cccCCCCcCceeeccccc
Q psy15002        159 SKLENLRKLELLHNRIAL-----IEEGDFEGKALTQLDLSQNSLAVVPS-------------PALKSLNHLLILNLNHNK  220 (357)
Q Consensus       159 ~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~  220 (357)
                      ...++|++|++++|.++.     +...+...++|++|++++|.+.....             ......+.|+.+.+++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            445566666666665542     11112223556666666665532110             011244567777777776


Q ss_pred             CcccCc----ccCCCCCCCCEEEccCCcCcccC-----CCccccccccccEEEccCCcCcccC----cccccCCCCCcEE
Q psy15002        221 ISALHS----NAFQGLDTLEILTIFENKLSLIE-----PDSFKGLEKKLKRLNLGGNELTRVP----QTSLSKLENLRKL  287 (357)
Q Consensus       221 l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L  287 (357)
                      +.....    ..+...+.|+.|++++|++....     ...+... ++|+.|++++|.++...    ...+..+++|++|
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcch-hhhcccccccccccccccccccccccccccchhh
Confidence            653322    22344567888888888775421     2233444 67888888888876432    1235667888888


Q ss_pred             EccCCcCceeCcCcC----C--CCCCCCEeecCCCcCccc-----CcccCCCCCCCcEEeCCCCccccc
Q psy15002        288 ELLHNRIALIEEGDF----E--GLHNLDSLVLAHNQLRTI-----PPRVFAHLPLLNSLELDGNHIHTV  345 (357)
Q Consensus       288 ~l~~n~l~~~~~~~~----~--~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~L~~N~l~~~  345 (357)
                      ++++|.+++.....+    .  ..+.|+.|++++|+++.-     ......+.+.|+.|+|++|.+...
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            888888776433222    1  246788999999988742     221213467888999999988653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.4e-15  Score=126.30  Aligned_cols=226  Identities=19%  Similarity=0.192  Sum_probs=149.8

Q ss_pred             EEEEEecCCCCcCccccccCCCcccEEEecCCCcceecCcc-cccccccceEEEccCCcCceeChhhhcCCCCCcEEecc
Q psy15002         92 IFYLKLRHNNLPKLTGFIFFGLDIRHLTIHNSSLAVVEESS-LSSIGKKLKRLNLGGNELTRVPQTSLSKLENLRKLELL  170 (357)
Q Consensus        92 l~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~l~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  170 (357)
                      +..+.++...+.......+...++++|+++++.+....... +... ++|++|++++|.++......+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhC-CCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            34555666555554445555568999999998876543222 3333 689999999999887666778899999999999


Q ss_pred             CC-cccc--ccCCCCCCCCCCeEECCCC-CCeeeCc-ccc-CCCCcCceeecccc--cCcccC-cccCCCCCCCCEEEcc
Q psy15002        171 HN-RIAL--IEEGDFEGKALTQLDLSQN-SLAVVPS-PAL-KSLNHLLILNLNHN--KISALH-SNAFQGLDTLEILTIF  241 (357)
Q Consensus       171 ~n-~l~~--~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~-~~l~~L~~L~l~~n--~l~~~~-~~~l~~l~~L~~L~L~  241 (357)
                      ++ .++.  +..-+...++|++|+++++ .+++... ..+ ...++|+.|+++++  .++... ......+++|++|+++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            85 5652  2222223489999999986 4443211 122 23478999999875  233221 1223457899999999


Q ss_pred             CC-cCcccCCCccccccccccEEEccCC-cCcccCcccccCCCCCcEEEccCCcCceeCcCcC-CCCCCCCEeecCCCcC
Q psy15002        242 EN-KLSLIEPDSFKGLEKKLKRLNLGGN-ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDF-EGLHNLDSLVLAHNQL  318 (357)
Q Consensus       242 ~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l  318 (357)
                      +| .++......+..+ ++|+.|++++| .+++.....+..+++|++|+++++ ++.-....+ ..+++   |.+..+.+
T Consensus       184 ~~~~itd~~~~~l~~~-~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~---L~i~~~~l  258 (284)
T d2astb2         184 DSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH---LQINCSHF  258 (284)
T ss_dssp             TCTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT---SEESCCCS
T ss_pred             cccCCCchhhhhhccc-CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc---ccccCccC
Confidence            86 4665555667776 79999999995 576555456778899999999987 332211111 22444   45667777


Q ss_pred             cccCc
Q psy15002        319 RTIPP  323 (357)
Q Consensus       319 ~~~~~  323 (357)
                      +.+.+
T Consensus       259 s~~~~  263 (284)
T d2astb2         259 TTIAR  263 (284)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            76544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.8e-15  Score=135.18  Aligned_cols=254  Identities=20%  Similarity=0.172  Sum_probs=127.9

Q ss_pred             ceEEEEEecCCCCcCcc-----ccccCC-CcccEEEecCCCcceecCc----ccccccccceEEEccCCcCceeChh---
Q psy15002         90 LIIFYLKLRHNNLPKLT-----GFIFFG-LDIRHLTIHNSSLAVVEES----SLSSIGKKLKRLNLGGNELTRVPQT---  156 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l~-----~~~~~~-~~L~~L~l~~~~l~~~~~~----~~~~l~~~L~~L~ls~n~l~~~~~~---  156 (357)
                      +.+++|++++|.|+..+     ...... .+|++|++++|.++.....    ++... ++|++|++++|.++.....   
T Consensus        55 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~-~~L~~L~L~~N~i~~~~~~~l~  133 (460)
T d1z7xw1          55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLC  133 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcc-ccccccccccccchhhhhhhhh
Confidence            46889999999986422     222222 3799999999998765432    23333 6799999999987642111   


Q ss_pred             ------------------------------hhcCCCCCcEEeccCCccccc---------cC------------------
Q psy15002        157 ------------------------------SLSKLENLRKLELLHNRIALI---------EE------------------  179 (357)
Q Consensus       157 ------------------------------~~~~l~~L~~L~l~~n~l~~~---------~~------------------  179 (357)
                                                    .+.....++.++++++.....         ..                  
T Consensus       134 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  213 (460)
T d1z7xw1         134 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  213 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             hcccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence                                          112234566666655532200         00                  


Q ss_pred             -------CCCCCCCCCeEECCCCCCeee-----CccccCCCCcCceeecccccCcccCc----ccCCCCCCCCEEEccCC
Q psy15002        180 -------GDFEGKALTQLDLSQNSLAVV-----PSPALKSLNHLLILNLNHNKISALHS----NAFQGLDTLEILTIFEN  243 (357)
Q Consensus       180 -------~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n  243 (357)
                             .....+.++.+++.+|.+...     ..........++.+++++|.+.....    ..+...+.++.+++++|
T Consensus       214 ~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n  293 (460)
T d1z7xw1         214 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  293 (460)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             hhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence                   000013455566655554321     11223345567777777776543211    12233456666666666


Q ss_pred             cCcccCCCcc----ccccccccEEEccCCcCcccCccc----ccCCCCCcEEEccCCcCceeCcC----cC-CCCCCCCE
Q psy15002        244 KLSLIEPDSF----KGLEKKLKRLNLGGNELTRVPQTS----LSKLENLRKLELLHNRIALIEEG----DF-EGLHNLDS  310 (357)
Q Consensus       244 ~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~----~~-~~~~~L~~  310 (357)
                      .++......+    ......++.++++++.++......    +...++|++|++++|+++.....    .+ ...+.|+.
T Consensus       294 ~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~  373 (460)
T d1z7xw1         294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV  373 (460)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCE
Confidence            6543211111    111134566666666555432211    22334566666666655432111    11 22345666


Q ss_pred             eecCCCcCcccC----cccCCCCCCCcEEeCCCCcccc
Q psy15002        311 LVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHT  344 (357)
Q Consensus       311 L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~N~l~~  344 (357)
                      |+|++|.++...    ...+..+++|++|+|++|++++
T Consensus       374 L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             EECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            666666655311    1123344556666666666544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=9.3e-16  Score=124.54  Aligned_cols=132  Identities=29%  Similarity=0.398  Sum_probs=87.2

Q ss_pred             ccCCCCcCceeecccccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCcccccCCCC
Q psy15002        204 ALKSLNHLLILNLNHNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQTSLSKLEN  283 (357)
Q Consensus       204 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  283 (357)
                      .+..+++|++|++++|+++.++  .+.++++|+.|++++|.++.++ ..+... ++|+.|++++|.++.++  .+..+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~-~~~~~~-~~L~~L~l~~N~i~~l~--~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVA-DTLEELWISYNQIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCS-SHHHHH-HHCCEEECSEEECCCHH--HHHHHHH
T ss_pred             HHhcccccceeECcccCCCCcc--cccCCccccChhhccccccccc-cccccc-ccccccccccccccccc--ccccccc
Confidence            4556677777777777777663  3566777777777777776653 222222 56777888877777664  2556677


Q ss_pred             CcEEEccCCcCceeCc-CcCCCCCCCCEeecCCCcCcccCcc----------cCCCCCCCcEEeCCCCccc
Q psy15002        284 LRKLELLHNRIALIEE-GDFEGLHNLDSLVLAHNQLRTIPPR----------VFAHLPLLNSLELDGNHIH  343 (357)
Q Consensus       284 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~L~L~~N~l~  343 (357)
                      |+.|++++|+++.++. ..+..+++|+.|++++|++...++.          .+..+|+|+.||  +.+++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            8888888887777653 3566778888888888877644332          135577888876  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=2e-15  Score=122.57  Aligned_cols=143  Identities=25%  Similarity=0.284  Sum_probs=76.0

Q ss_pred             ceEEEccCC--cCceeChhhhcCCCCCcEEeccCCccccccCCCCCCCCCCeEECCCCCCeeeCccccCCCCcCceeecc
Q psy15002        140 LKRLNLGGN--ELTRVPQTSLSKLENLRKLELLHNRIALIEEGDFEGKALTQLDLSQNSLAVVPSPALKSLNHLLILNLN  217 (357)
Q Consensus       140 L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  217 (357)
                      ++.+++++.  .++.++ ..+..+++|++|++++|.|+.++ .+..+++|++|++++|.++.++.               
T Consensus        25 ~~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~---------------   87 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIEN---------------   87 (198)
T ss_dssp             CSCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSS---------------
T ss_pred             cceeeeecccCchhhhh-hHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccc---------------
Confidence            555566543  344443 34677777777777777776653 23233455555555554444432               


Q ss_pred             cccCcccCcccCCCCCCCCEEEccCCcCcccCCCccccccccccEEEccCCcCcccCc-ccccCCCCCcEEEccCCcCce
Q psy15002        218 HNKISALHSNAFQGLDTLEILTIFENKLSLIEPDSFKGLEKKLKRLNLGGNELTRVPQ-TSLSKLENLRKLELLHNRIAL  296 (357)
Q Consensus       218 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  296 (357)
                                ....+++|+.|++++|+++.+.  .+..+ ++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus        88 ----------~~~~~~~L~~L~l~~N~i~~l~--~~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          88 ----------LDAVADTLEELWISYNQIASLS--GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ----------HHHHHHHCCEEECSEEECCCHH--HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ----------cccccccccccccccccccccc--ccccc-ccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence                      1122234555555555555442  23333 456666666666655432 235566666666666666655


Q ss_pred             eCcCc----------CCCCCCCCEee
Q psy15002        297 IEEGD----------FEGLHNLDSLV  312 (357)
Q Consensus       297 ~~~~~----------~~~~~~L~~L~  312 (357)
                      .....          +..+++|+.||
T Consensus       155 ~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         155 DYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CcccccchhhHHHHHHHHCCCcCEeC
Confidence            43321          33467777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=8.5e-14  Score=123.04  Aligned_cols=231  Identities=19%  Similarity=0.156  Sum_probs=159.7

Q ss_pred             ceEEEEEecCCCCcCc-----cccccCCCcccEEEecCCCcceecCc----------ccccccccceEEEccCCcCceeC
Q psy15002         90 LIIFYLKLRHNNLPKL-----TGFIFFGLDIRHLTIHNSSLAVVEES----------SLSSIGKKLKRLNLGGNELTRVP  154 (357)
Q Consensus        90 ~~l~~L~l~~~~i~~l-----~~~~~~~~~L~~L~l~~~~l~~~~~~----------~~~~l~~~L~~L~ls~n~l~~~~  154 (357)
                      ..++.|+|++|.+..-     ........+++.+.+.++........          .+... ++|++|++++|.++...
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCTTT
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhC-CCccccccccccccccc
Confidence            5678999999988643     22333344899999988765443221          11122 57999999999987643


Q ss_pred             hh----hhcCCCCCcEEeccCCcccccc-----CCC---------CCCCCCCeEECCCCCCeeeCc----cccCCCCcCc
Q psy15002        155 QT----SLSKLENLRKLELLHNRIALIE-----EGD---------FEGKALTQLDLSQNSLAVVPS----PALKSLNHLL  212 (357)
Q Consensus       155 ~~----~~~~l~~L~~L~l~~n~l~~~~-----~~~---------~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~  212 (357)
                      ..    .+...++|++|++++|.++...     ..+         ...+.|+.+++++|.+.....    ..+...+.++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence            33    3456799999999999875210     001         123689999999998864332    2345568899


Q ss_pred             eeecccccCccc-----CcccCCCCCCCCEEEccCCcCcccCC----CccccccccccEEEccCCcCcccCccc----cc
Q psy15002        213 ILNLNHNKISAL-----HSNAFQGLDTLEILTIFENKLSLIEP----DSFKGLEKKLKRLNLGGNELTRVPQTS----LS  279 (357)
Q Consensus       213 ~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~  279 (357)
                      +|++++|++...     ....+...++|+.|++++|.++....    ..+... ++|+.|++++|.++......    +.
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~-~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc-ccchhhhhhcCccCchhhHHHHHHhh
Confidence            999999988642     23446678899999999999865322    233444 78999999999998643222    22


Q ss_pred             --CCCCCcEEEccCCcCceeCcC----cC-CCCCCCCEeecCCCcCcccC
Q psy15002        280 --KLENLRKLELLHNRIALIEEG----DF-EGLHNLDSLVLAHNQLRTIP  322 (357)
Q Consensus       280 --~l~~L~~L~l~~n~l~~~~~~----~~-~~~~~L~~L~L~~n~l~~~~  322 (357)
                        ..+.|++|++++|+++.....    .+ .+.++|+.|++++|++....
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence              346799999999998763321    22 24688999999999997543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.1e-09  Score=83.37  Aligned_cols=79  Identities=29%  Similarity=0.282  Sum_probs=42.4

Q ss_pred             ccccEEEccCCcCcccCc--ccccCCCCCcEEEccCCcCceeCcCcCCCCCCCCEeecCCCcCcccCc-------ccCCC
Q psy15002        258 KKLKRLNLGGNELTRVPQ--TSLSKLENLRKLELLHNRIALIEEGDFEGLHNLDSLVLAHNQLRTIPP-------RVFAH  328 (357)
Q Consensus       258 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~  328 (357)
                      +.|+.|++++|+++.+.+  ..+..+++|+.|++++|.+++++...+.+..+|+.|++++|.++....       .++..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            455555555555554432  223445666666666666666554333234456666666666654332       23455


Q ss_pred             CCCCcEEe
Q psy15002        329 LPLLNSLE  336 (357)
Q Consensus       329 ~~~L~~L~  336 (357)
                      +|+|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            66777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.4e-09  Score=79.91  Aligned_cols=81  Identities=26%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             CCCCCCEEEccCCcCcccCC--CccccccccccEEEccCCcCcccCcccccCCCCCcEEEccCCcCceeCcC-------c
Q psy15002        231 GLDTLEILTIFENKLSLIEP--DSFKGLEKKLKRLNLGGNELTRVPQTSLSKLENLRKLELLHNRIALIEEG-------D  301 (357)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~  301 (357)
                      .+++|++|++++|+++.+.+  ..+..+ ++|+.|++++|.++.+++-.+.....|+.|++++|.+......       .
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l-~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHS-TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhC-CcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45566666666666665532  223334 5666666666666665543333344566677777766544321       2


Q ss_pred             CCCCCCCCEee
Q psy15002        302 FEGLHNLDSLV  312 (357)
Q Consensus       302 ~~~~~~L~~L~  312 (357)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            34567777666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=1.9e-05  Score=60.65  Aligned_cols=17  Identities=0%  Similarity=-0.091  Sum_probs=8.2

Q ss_pred             CCCCCCCEeecCCCcCc
Q psy15002        303 EGLHNLDSLVLAHNQLR  319 (357)
Q Consensus       303 ~~~~~L~~L~L~~n~l~  319 (357)
                      ...++|+.|++++|++.
T Consensus        97 ~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          97 LVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             TTTCCCSEEECCCCSSC
T ss_pred             HhCCcCCEEECCCCcCC
Confidence            33444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.46  E-value=2.4e-05  Score=60.13  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=18.6

Q ss_pred             ccceEEEccCC-cCceeC----hhhhcCCCCCcEEeccCCccc
Q psy15002        138 KKLKRLNLGGN-ELTRVP----QTSLSKLENLRKLELLHNRIA  175 (357)
Q Consensus       138 ~~L~~L~ls~n-~l~~~~----~~~~~~l~~L~~L~l~~n~l~  175 (357)
                      ++|++|+++++ .++.-.    ..++...++|++|++++|.++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            34666666653 343211    122444555666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.72  E-value=0.00018  Score=54.83  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             ccceEEEccC-CcCceeCh----hhhcCCCCCcEEeccCCccc
Q psy15002        138 KKLKRLNLGG-NELTRVPQ----TSLSKLENLRKLELLHNRIA  175 (357)
Q Consensus       138 ~~L~~L~ls~-n~l~~~~~----~~~~~l~~L~~L~l~~n~l~  175 (357)
                      ++|++|++++ +.++.-..    .++...++|++|++++|.++
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            3566666665 33443211    22345566666666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.60  E-value=0.00017  Score=55.05  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=19.9

Q ss_pred             CCCcCceeeccc-ccCcccC----cccCCCCCCCCEEEccCCcCcc
Q psy15002        207 SLNHLLILNLNH-NKISALH----SNAFQGLDTLEILTIFENKLSL  247 (357)
Q Consensus       207 ~l~~L~~L~l~~-n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~  247 (357)
                      +.++|++|++++ +.++...    ..++...++|+.|++++|.++.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH
Confidence            345666666665 2333211    1233445556666666655543