Psyllid ID: psy15005

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
cEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEHHHHHccccccccccccccEEEEEEEEEHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHHHHEEEEEEEEEEEEccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cEEEEEEEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHEEEHHHHHHHHHc
MVYCVCIFYashggmkaVILTDSFQAFVLLSSLIVLMMMgqwltpggfsqiwedststNRIESLIALWVSAVGLILIYCINAYMGAILYsqyktcdpltkhiihgsdqmlPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVqipenkgaVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIEllgnpsefynhgsqFFLICISFVLVVpltsrlylPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVpltsrlylPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
MVYCVCIFYASHGGMKAVILTDSFQAFvllsslivlmmmGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
*VYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALAL****
MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
iiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESLIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSVLQVVSFITAIELLGNPSEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEFYNHGSQFFLICISFVLVVPLTSRLYLPVFMKLRLTSAYEYLEMRFDSKVRVMASALYIIQMVFYTSVAVFAPALALSHAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
Q3ZMH1610 Sodium-coupled monocarbox yes N/A 0.574 0.316 0.289 3e-25
Q1EHB4618 Sodium-coupled monocarbox yes N/A 0.574 0.312 0.297 7e-25
Q49B93619 Sodium-coupled monocarbox yes N/A 0.574 0.311 0.289 2e-24
Q8BYF6611 Sodium-coupled monocarbox no N/A 0.610 0.335 0.273 7e-23
Q7T384623 Sodium-coupled monocarbox no N/A 0.574 0.309 0.272 2e-22
Q8N695610 Sodium-coupled monocarbox no N/A 0.601 0.331 0.281 4e-22
Q7SYH5622 Sodium-coupled monocarbox N/A N/A 0.610 0.329 0.281 9e-22
A7MBD8617 Sodium-coupled monocarbox no N/A 0.574 0.312 0.276 9e-22
Q5BL81620 Sodium-coupled monocarbox no N/A 0.601 0.325 0.281 4e-21
Q92911643 Sodium/iodide cotransport no N/A 0.520 0.272 0.308 4e-19
>sp|Q3ZMH1|SC5A8_DANRE Sodium-coupled monocarboxylate transporter 1 OS=Danio rerio GN=slc5a8 PE=1 SV=1 Back     alignment and function desciption
 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 49/242 (20%)

Query: 5   VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIESL 64
           VCI Y + GG+KAVI TD FQ  ++L   + ++  G  L  GG  ++W DS    R+E+ 
Sbjct: 173 VCIIYCTLGGLKAVIWTDVFQMIIMLGGFVAVIARGAVLQ-GGLGRVWNDSFYGGRLETF 231

Query: 65  -----------------------------------------------IALWVSAVGLILI 77
                                                          ++L+V+ VGL + 
Sbjct: 232 SFDPDPLRRHSFWTIVVGGSLMWASMYSINQSQVQRYISCRTMTHAKLSLYVNMVGLWVT 291

Query: 78  YCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASL 137
             +    G  +YS YK CDP T   +  +DQ+LP  V+++L  + G+PG FVA  ++ +L
Sbjct: 292 VSLAMMSGLTMYSIYKDCDPFTNKDVGATDQLLPYLVMDILADFPGLPGLFVAAAYSGTL 351

Query: 138 GTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERLGSV 197
            TV+S+IN+L AVT++DF+       + E + + I+  +S+ YG +   +  +   +G++
Sbjct: 352 STVSSSINALVAVTVEDFMKPAWP-SLTERQLSWINMGMSVFYGAVCIGMAGVASMMGNI 410

Query: 198 LQ 199
           LQ
Sbjct: 411 LQ 412
Acts as an electrogenic sodium (Na(+)) and chloride (Cl-)-dependent sodium-coupled solute transporter, including transport of monocarboxylates (short-chain fatty acids including L-lactate, D-lactate, pyruvate, acetate, propionate, valerate and butyrate), lactate, mocarboxylate drugs (nicotinate, benzoate, salicylate and 5-aminosalicylate) and ketone bodies (beta-D-hydroxybutyrate, acetoacetate and alpha-ketoisocaproate), with a Na(+):substrate stoichiometry of between 4:1 and 2:1. Catalyzes passive carrier mediated diffusion of iodide. Mediates iodide transport from the thyrocyte into the colloid lumen through the apical membrane.
Danio rerio (taxid: 7955)
>sp|Q1EHB4|SC5AC_HUMAN Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2 Back     alignment and function description
>sp|Q49B93|SC5AC_MOUSE Sodium-coupled monocarboxylate transporter 2 OS=Mus musculus GN=Slc5a12 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYF6|SC5A8_MOUSE Sodium-coupled monocarboxylate transporter 1 OS=Mus musculus GN=Slc5a8 PE=1 SV=1 Back     alignment and function description
>sp|Q7T384|SC5AC_DANRE Sodium-coupled monocarboxylate transporter 2 OS=Danio rerio GN=slc5a12 PE=1 SV=1 Back     alignment and function description
>sp|Q8N695|SC5A8_HUMAN Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2 Back     alignment and function description
>sp|Q7SYH5|SC5A8_XENLA Sodium-coupled monocarboxylate transporter 1 OS=Xenopus laevis GN=slc5a8 PE=2 SV=1 Back     alignment and function description
>sp|A7MBD8|SC5AC_BOVIN Sodium-coupled monocarboxylate transporter 2 OS=Bos taurus GN=SLC5A12 PE=2 SV=1 Back     alignment and function description
>sp|Q5BL81|SC5A8_XENTR Sodium-coupled monocarboxylate transporter 1 OS=Xenopus tropicalis GN=slc5a8 PE=2 SV=1 Back     alignment and function description
>sp|Q92911|SC5A5_HUMAN Sodium/iodide cotransporter OS=Homo sapiens GN=SLC5A5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
322780794 571 hypothetical protein SINV_02139 [Solenop 0.589 0.346 0.471 4e-55
332018423 617 Sodium-coupled monocarboxylate transport 0.589 0.320 0.475 2e-53
307213712 541 Sodium-coupled monocarboxylate transport 0.589 0.365 0.475 3e-53
345493450 638 PREDICTED: LOW QUALITY PROTEIN: sodium-c 0.592 0.311 0.469 1e-52
383851180 1205 PREDICTED: uncharacterized protein LOC10 0.589 0.164 0.455 4e-52
328778498 1207 PREDICTED: hypothetical protein LOC41355 0.589 0.164 0.471 3e-51
307177539 1217 Putative sodium-dependent multivitamin t 0.592 0.163 0.453 4e-51
357621003 630 hypothetical protein KGM_11153 [Danaus p 0.592 0.315 0.437 2e-50
270007206 659 hypothetical protein TcasGA2_TC013748 [T 0.592 0.301 0.437 4e-47
91082285 632 PREDICTED: similar to AGAP005795-PA [Tri 0.592 0.314 0.437 4e-47
>gi|322780794|gb|EFZ10023.1| hypothetical protein SINV_02139 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/248 (47%), Positives = 155/248 (62%), Gaps = 50/248 (20%)

Query: 1   MVYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMG-QWLTPGGFSQIWEDSTSTN 59
           +VY VCIFYAS GGMKAVI+TD+FQA VL+ SL +++  G  W   GG +++WE++ ++ 
Sbjct: 148 LVYVVCIFYASQGGMKAVIMTDTFQAAVLIGSLFLILGYGLSW--SGGTARVWEENANSG 205

Query: 60  RIESL-----------------------------------------------IALWVSAV 72
           R+E                                                 IALWVSA 
Sbjct: 206 RMEFFNMDPSPTVRHSFWSVVIGGTFYWTTMFCSNQASVQKYLSVENISQVRIALWVSAF 265

Query: 73  GLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGI 132
           G+I+IY +N   G +LYS YK CDP+T   I G DQ+LPLYV+N LG   G+PGFFVAGI
Sbjct: 266 GMIVIYSVNFLTGMVLYSAYKDCDPMTAGYISGQDQILPLYVMNFLGSLRGMPGFFVAGI 325

Query: 133 FAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVE 192
           FAASLGTVASA+NSLAA+T +D L  +  + +P NKGA+ ++++SI +G +SF L+F+VE
Sbjct: 326 FAASLGTVASALNSLAAITCEDILRGLFQMDLPANKGAIYARWISIFFGALSFALVFVVE 385

Query: 193 RLGSVLQV 200
           RLGSVLQV
Sbjct: 386 RLGSVLQV 393

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332018423|gb|EGI59017.1| Sodium-coupled monocarboxylate transporter 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307213712|gb|EFN89061.1| Sodium-coupled monocarboxylate transporter 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345493450|ref|XP_003427076.1| PREDICTED: LOW QUALITY PROTEIN: sodium-coupled monocarboxylate transporter 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383851180|ref|XP_003701117.1| PREDICTED: uncharacterized protein LOC100879178 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328778498|ref|XP_396997.4| PREDICTED: hypothetical protein LOC413556 [Apis mellifera] Back     alignment and taxonomy information
>gi|307177539|gb|EFN66650.1| Putative sodium-dependent multivitamin transporter [Camponotus floridanus] Back     alignment and taxonomy information
>gi|357621003|gb|EHJ72989.1| hypothetical protein KGM_11153 [Danaus plexippus] Back     alignment and taxonomy information
>gi|270007206|gb|EFA03654.1| hypothetical protein TcasGA2_TC013748 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91082285|ref|XP_973784.1| PREDICTED: similar to AGAP005795-PA [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
FB|FBgn0035293683 CG5687 [Drosophila melanogaste 0.431 0.212 0.482 4e-41
FB|FBgn0029950601 CG9657 [Drosophila melanogaste 0.491 0.274 0.343 1.2e-32
FB|FBgn0052669604 CG32669 [Drosophila melanogast 0.434 0.241 0.355 1.5e-28
RGD|1564146611 Slc5a8 "solute carrier family 0.502 0.276 0.333 3e-28
FB|FBgn0034494587 CG10444 [Drosophila melanogast 0.434 0.248 0.342 3.9e-28
MGI|MGI:2384916611 Slc5a8 "solute carrier family 0.502 0.276 0.333 1.2e-27
UNIPROTKB|C8KIL7611 SMCT1 "Sodium-dependent monoca 0.482 0.265 0.327 4.6e-27
UNIPROTKB|Q1EHB4618 SLC5A12 "Sodium-coupled monoca 0.398 0.216 0.370 5.4e-27
UNIPROTKB|F1NJG7629 SLC5A12 "Uncharacterized prote 0.434 0.232 0.335 6e-27
MGI|MGI:2138890619 Slc5a12 "solute carrier family 0.434 0.235 0.348 6.4e-27
FB|FBgn0035293 CG5687 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 352 (129.0 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
 Identities = 71/147 (48%), Positives = 101/147 (68%)

Query:    65 IALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGI 124
             IAL  + +GLI+++ +N Y G ++++ Y  CDPLT   I  +DQ+LP YV+N     + +
Sbjct:   363 IALGFAIIGLIVVFLLNFYTGLMVFTHYADCDPLTAGRISATDQLLPYYVINTYEHISSV 422

Query:   125 PGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVIS 184
              G FVAGIFAASLGTVASA+NSL+AVT +D L N + ++I   KGA  +K++S+ +G+ S
Sbjct:   423 AGIFVAGIFAASLGTVASALNSLSAVTCEDLLVNGMNIKISPEKGATYAKWMSLGFGIAS 482

Query:   185 FLLIFIVERLGSVLQVVSFITAIELLG 211
             F L+FIVE LG VLQ    +T   L+G
Sbjct:   483 FGLVFIVEHLGGVLQAT--LTLNGLIG 507
GO:0008507 "sodium:iodide symporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
FB|FBgn0029950 CG9657 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0052669 CG32669 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1564146 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0034494 CG10444 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2384916 Slc5a8 "solute carrier family 5 (iodide transporter), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C8KIL7 SMCT1 "Sodium-dependent monocarboxylate cotransporter" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q1EHB4 SLC5A12 "Sodium-coupled monocarboxylate transporter 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJG7 SLC5A12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2138890 Slc5a12 "solute carrier family 5 (sodium/glucose cotransporter), member 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
cd11492522 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and 1e-57
cd11505536 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra 6e-31
cd11492 522 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and 3e-30
cd11519541 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr 9e-30
cd11504527 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp 9e-29
cd11520529 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr 3e-28
cd10326477 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and 8e-28
cd11503535 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N 1e-25
cd11505 536 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotra 2e-19
cd11520 529 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotr 2e-19
cd11495477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 1e-18
cd10326 477 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and 5e-18
cd11519 541 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotr 8e-18
cd11504 527 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransp 3e-17
cd11503 535 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter N 2e-14
TIGR00813407 TIGR00813, sss, transporter, SSS family 6e-14
cd11495 477 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subg 1e-12
cd11494481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 8e-12
cd11494 481 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subg 2e-11
cd11493479 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subg 6e-10
cd10322455 cd10322, SLC5sbd, Solute carrier 5 family, sodium/ 1e-07
TIGR00813 407 TIGR00813, sss, transporter, SSS family 4e-07
cd11493 479 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subg 1e-05
cd11477495 cd11477, SLC5sbd_u1, Uncharacterized bacterial sol 2e-04
COG0591493 COG0591, PutP, Na+/proline symporter [Amino acid t 6e-04
cd11475464 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter 0.003
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information 
 Score =  193 bits (494), Expect = 1e-57
 Identities = 85/253 (33%), Positives = 130/253 (51%), Gaps = 48/253 (18%)

Query: 2   VYCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRI 61
           V  VC FY + GG+KAV+ TD FQ  V+   ++ +++ G  +  GG S++WE +    R+
Sbjct: 157 VGIVCTFYTTLGGLKAVVWTDVFQVVVMFGGVLAVIIKG-TIDVGGLSEVWEIAEEGGRL 215

Query: 62  ESL-----------------------------------------------IALWVSAVGL 74
           E                                                  ALW++ VGL
Sbjct: 216 EFFNFDPDPTVRHTFWSLVIGGTFTWLSLYGVNQAQVQRYLSLPSLKQAKKALWLNIVGL 275

Query: 75  ILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFA 134
           +LI  +  + G ++Y++Y  CDPLT  +I   DQ+LP +V+++LG   G+PG FVAGIF+
Sbjct: 276 VLILSLCVFSGLVIYAKYHDCDPLTAGLISKPDQLLPYFVMDILGHLPGLPGLFVAGIFS 335

Query: 135 ASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERL 194
           A+L T++S +NSLAAVT++DF+       + E K   I K L +++G++   L F+ E L
Sbjct: 336 AALSTLSSGLNSLAAVTLEDFIKPFFKKILSERKATNIMKGLVLVFGLLCIGLAFLAELL 395

Query: 195 GSVLQVVSFITAI 207
           G VLQ    I  I
Sbjct: 396 GGVLQAALSIFGI 408

NIS (encoded by the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and -2. SMCT1(encoded by the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (encoded by the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subgroup belongs to the solute carrier 5 (SLC5) transporter family. Length = 522
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and 2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family Back     alignment and domain information
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain Back     alignment and domain information
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
KOG2349|consensus585 100.0
TIGR00813407 sss transporter, SSS family. have different number 100.0
PRK10484523 putative transporter; Provisional 100.0
PRK15419502 proline:sodium symporter PutP; Provisional 100.0
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 99.98
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 99.97
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 99.97
PRK09442483 panF sodium/panthothenate symporter; Provisional 99.97
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 99.97
PRK12488549 acetate permease; Provisional 99.97
PRK09395551 actP acetate permease; Provisional 99.96
COG0591493 PutP Na+/proline symporter [Amino acid transport a 99.95
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 99.95
COG4147529 DhlC Predicted symporter [General function predict 99.95
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 99.94
COG4146571 Predicted symporter [General function prediction o 99.84
KOG3761|consensus591 99.79
KOG2349|consensus 585 99.74
COG4146 571 Predicted symporter [General function prediction o 99.49
KOG2348|consensus667 99.41
PRK10484 523 putative transporter; Provisional 99.32
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 99.23
PRK12488 549 acetate permease; Provisional 99.06
PF00474 406 SSF: Sodium:solute symporter family; InterPro: IPR 99.05
PRK09395 551 actP acetate permease; Provisional 99.05
PRK15419 502 proline:sodium symporter PutP; Provisional 98.99
TIGR00813 407 sss transporter, SSS family. have different number 98.98
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 98.93
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.91
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.86
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 98.77
PRK09442 483 panF sodium/panthothenate symporter; Provisional 98.77
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.29
COG4147 529 DhlC Predicted symporter [General function predict 96.91
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 91.53
PRK15433439 branched-chain amino acid transport system 2 carri 87.33
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 86.23
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 84.87
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 80.36
>KOG2349|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-35  Score=288.79  Aligned_cols=229  Identities=30%  Similarity=0.555  Sum_probs=210.6

Q ss_pred             EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhhcccCcchH-------------------
Q psy15005          3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWEDSTSTNRIES-------------------   63 (336)
Q Consensus         3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-------------------   63 (336)
                      +++|.+||..||+|||+|||++|.++|+.+...+...+..+ .||.++++|...++++.++                   
T Consensus       165 ~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~-vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~  243 (585)
T KOG2349|consen  165 GLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMK-VGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLF  243 (585)
T ss_pred             HHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehh-cCcccceeeecccCCceeecccccCCCcccccchhHhc
Confidence            45678999999999999999999999999999999999999 9999999998765433210                   


Q ss_pred             -----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCccchHHHH
Q psy15005         64 -----------------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCDPLTKHIIHGSDQMLPLYV  114 (336)
Q Consensus        64 -----------------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~d~~~p~~~  114 (336)
                                                   |++++.+..+..++.....++|+..|++|++|||..++..+++|+++|.++
T Consensus       244 Gg~~~~l~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV  323 (585)
T KOG2349|consen  244 GGTIMWLSYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFV  323 (585)
T ss_pred             CCcHHHHHHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHH
Confidence                                         788899999999999999999999999999999999998999999999999


Q ss_pred             HHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15005        115 LNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGVISFLLIFIVERL  194 (336)
Q Consensus       115 ~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv~~i~~i~~a~~~~~~  194 (336)
                      ++.+|+.||+.|++++++++|.|||.+|.+||.|+.+.+|++||..| +.||||..+.+|+.+++.|++++.+++..++.
T Consensus       324 ~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD~ik~~~k-~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~  402 (585)
T KOG2349|consen  324 MDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLEDYIKPLRK-PLSERELNIAMRLFVVVLGLISIGLAFVVELL  402 (585)
T ss_pred             HHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CcChHHHhhhhheeeeeehhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987 89999999999999999999999999999988


Q ss_pred             hhHHHHHHHhheee--------ecCcCccccccCCcchhhheeehhhcc
Q psy15005        195 GSVLQVVSFITAIE--------LLGNPSEFYNHGSQFFLICISFVLVVP  235 (336)
Q Consensus       195 ~~i~~~~~~~~g~~--------llGl~~~~~~~~~~g~~~~i~~gl~~s  235 (336)
                      +++++..+++.|+.        .+|+|+++  .|.+++.+++..|+.+.
T Consensus       403 ~~vlq~~~si~g~~~gP~~gvF~Lgmf~pr--~N~kgA~~Gli~~~~~~  449 (585)
T KOG2349|consen  403 QQVLQYSQSIFGYLGGPLLGVFVLGMFVPR--VNEKGALVGLIAGLLLM  449 (585)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHhccc--cCCcchhHHHHHHHHHH
Confidence            89999999888876        77888984  68899998888887776

>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG3761|consensus Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>COG4146 Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG2348|consensus Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 1e-16
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 3e-10
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 7e-15
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 8e-10
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 38/265 (14%), Positives = 86/265 (32%), Gaps = 65/265 (24%)

Query: 5   VCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPG------GFSQIWEDS--- 55
             + Y+ +GG+ AV+ TD  Q F L+    +   M      G      G S++ + +   
Sbjct: 172 FALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGH 231

Query: 56  --------------------------------------------TSTNRIESLIALWVSA 71
                                                        + +  E+   +  +A
Sbjct: 232 FEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAA 291

Query: 72  VGLILIYCINAYMGAILYSQYK---------TCDPLTKHIIHGSDQMLPLYVLNVLGKYT 122
              +++  +    G   Y                         +D+  P ++   L    
Sbjct: 292 FLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYP-WLTQFL--PV 348

Query: 123 GIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSILYGV 182
           G+ G   A + AA + ++AS +NS A +   D     ++    ++K   + +  +++  +
Sbjct: 349 GVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALI 408

Query: 183 ISFLLIFIVERLGSVLQVVSFITAI 207
           I+ L+  ++  +G   Q +   T +
Sbjct: 409 IAALIAPMLGGIGQCFQYIQEYTGL 433
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Length = 593 Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Length = 530 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 99.97
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 99.96
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 99.34
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 99.31
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 95.41
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 87.82
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
Probab=99.97  E-value=8.1e-33  Score=275.99  Aligned_cols=229  Identities=19%  Similarity=0.234  Sum_probs=179.0

Q ss_pred             EEEEeeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhh-------hhccc---------Cc------
Q psy15005          3 YCVCIFYASHGGMKAVILTDSFQAFVLLSSLIVLMMMGQWLTPGGFSQIWE-------DSTST---------NR------   60 (336)
Q Consensus         3 ~~v~~~Yt~~GG~~av~~TD~iQ~ii~~~~~~~~~~~~~~~~~gG~~~~~~-------~~~~~---------~~------   60 (336)
                      ++++++||..||+|||+|||++|+++|+++.+++.+.++.+ .||++++.+       ..++.         +.      
T Consensus       141 ~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~-~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (530)
T 3dh4_A          141 ALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSF-IGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPG  219 (530)
T ss_dssp             HHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCT
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChhhHHHHHHHHHhcCchhcccccCCCCccccccch
Confidence            44668999999999999999999999999999998888887 666543322       11110         00      


Q ss_pred             c----------hH----------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC---Cc------c
Q psy15005         61 I----------ES----------------------LIALWVSAVGLILIYCINAYMGAILYSQYKTCD---PL------T   99 (336)
Q Consensus        61 ~----------~~----------------------r~a~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~------~   99 (336)
                      +          ++                      ||+.+++.....++.++..++|+++++.+++++   +.      .
T Consensus       220 ~~~~i~~~~~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~  299 (530)
T 3dh4_A          220 IAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATN  299 (530)
T ss_dssp             THHHHSTHHHHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhccccccc
Confidence            0          00                      788888887777777778899999998885421   00      0


Q ss_pred             ccccCCCccchHHHHHHHhccCCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHHH
Q psy15005        100 KHIIHGSDQMLPLYVLNVLGKYTGIPGFFVAGIFAASLGTVASAINSLAAVTMQDFLTNVLAVQIPENKGAVISKYLSIL  179 (336)
Q Consensus       100 ~~~~~~~d~~~p~~~~~~lp~~~~~~gl~~a~~~aA~mST~~s~l~a~st~~~~Di~~~~~~~~~s~~~~~~~~R~~~vv  179 (336)
                      .++.+++|+++|.+++ .+|  |++.|+++++++||+|||+||.+|+.|+.+++|+||+++|||+||||+++++|+.+++
T Consensus       300 ~~~~~~~d~~~p~l~~-~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~  376 (530)
T 3dh4_A          300 LPSAANADKAYPWLTQ-FLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVV  376 (530)
T ss_dssp             CCCSSSGGGHHHHHHT-TCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcchHHHHHHH-Hcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            0234689999999986 999  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhheee--------ecCcCccccccCCcchhhheeehhhcccc
Q psy15005        180 YGVISFLLIFIVERLGSVLQVVSFITAIE--------LLGNPSEFYNHGSQFFLICISFVLVVPLT  237 (336)
Q Consensus       180 ~~i~~i~~a~~~~~~~~i~~~~~~~~g~~--------llGl~~~~~~~~~~g~~~~i~~gl~~s~~  237 (336)
                      ++++++.+|...++.++++++.+.+.|.+        ++|++|||  .|++|+++++..|....+.
T Consensus       377 ~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wkr--~~~~gA~~g~i~G~~~~~~  440 (530)
T 3dh4_A          377 ALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKK--TTSKGAIIGVVASIPFALF  440 (530)
T ss_dssp             HHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence            99999999976666667777766554432        78999995  6999999999999988854
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00