Psyllid ID: psy15011

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEANS
cccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEccccccEEEEccccccccHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccEEEEEEEcccccccHHHHHHHHccccccccHHHHHHHHHHcEEEEEEccEEEEEccccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccccccccccccccccccccccccc
ccccHHHHccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEEcccccccEEEEcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEccEEEEEccccccccccccccccHHHHHHHcccEEEEEcccEEEEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHccccHHHHcHHHHHHcHHHccccccccccccccccccccccccccc
menawsmkipefkkednpheylkeCWPLVKNALELHFIKAELDVIEGSMTVFttrktwdpyIIIKARDMIKLLsrsvpyeplkeeylkECWPLVKNALELHFIKAELDVIEGSMTVFttrktwdpyIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRqrligpngctlKSIELLTNCYMLVQGQTvaalgphkgllqsnigpngctlKSIELLTNCYMLVQGQtvaalgphkglLQVRRIVEDTMKNIHPIYNIKALMIKRelakdpklknenwerflpnfksktlskrkmpkkrktkseytpfpppqpeseans
menawsmkipefkkednphEYLKECWPLVKNALELHFIKAELDVIEGSMTvfttrktwdpyIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTvfttrktwdpyIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIkignlvqnkqrfvkrrqrligpngcTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELakdpklknenwerflpnfksktlskrkmpkkrktkseytpfpppqpeseans
MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFksktlskrkmpkkrktksEYTPFPPPQPESEANS
*******************EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAK********WERF**************************************
**NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAE*********************************RSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKR***********NWERFL*************************************
MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKT******************************
**NAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLS**************TPFPPP********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFPPPQPESEANS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
B4JDU5341 KRR1 small subunit proces N/A N/A 0.727 0.712 0.524 8e-89
B3MM49343 KRR1 small subunit proces N/A N/A 0.727 0.708 0.530 4e-86
B4N0P7347 KRR1 small subunit proces N/A N/A 0.727 0.700 0.536 2e-85
Q9VPU8345 KRR1 small subunit proces yes N/A 0.736 0.713 0.522 3e-85
B3N899345 KRR1 small subunit proces N/A N/A 0.736 0.713 0.519 1e-84
B4LTY6343 KRR1 small subunit proces N/A N/A 0.730 0.711 0.525 3e-84
B4KF66344 KRR1 small subunit proces N/A N/A 0.727 0.706 0.530 1e-83
B4G9L6340 KRR1 small subunit proces N/A N/A 0.727 0.714 0.521 2e-83
B4P2Y8344 KRR1 small subunit proces N/A N/A 0.736 0.715 0.513 4e-83
Q8BGA5 380 KRR1 small subunit proces yes N/A 0.682 0.6 0.576 5e-82
>sp|B4JDU5|KRR1_DROGR KRR1 small subunit processome component homolog OS=Drosophila grimshawi GN=dbe PE=3 SV=1 Back     alignment and function desciption
 Score =  327 bits (838), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 203/330 (61%), Gaps = 87/330 (26%)

Query: 1   MENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDP 60
           ++NAWS+KIP FK EDNPH                                         
Sbjct: 17  VDNAWSLKIPTFKAEDNPH----------------------------------------- 35

Query: 61  YIIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTR 120
                   M++  S +  +   +E+YLKE WPLV+  +  H ++AELD+IEGSM V TTR
Sbjct: 36  -------GMVEESSFATLFPKYREKYLKEVWPLVQQTVAEHHLRAELDLIEGSMVVKTTR 88

Query: 121 KTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLI 180
           KTWDPYIIIK+RDMIKL++RSVP+EQA RVLQD+  CDIIKIGNLV  K++FVKRRQRLI
Sbjct: 89  KTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDETGCDIIKIGNLVHKKEKFVKRRQRLI 148

Query: 181 GPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQ 240
           GPNG TLKSIELLT+CY+LVQG TVAALGP+KG                           
Sbjct: 149 GPNGATLKSIELLTDCYVLVQGNTVAALGPYKG--------------------------- 181

Query: 241 GQTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNF 300
                       L QVR IV +TM N+HPIYNIKALMIKREL KDP+L NE+W RFLP F
Sbjct: 182 ------------LQQVRDIVLETMNNVHPIYNIKALMIKRELMKDPQLANEDWSRFLPKF 229

Query: 301 KSKTLSKRKMPKKRKTKSEYTPFPPPQPES 330
           K+K +SKRK PK RK K EYTPFPP QPES
Sbjct: 230 KNKNISKRKQPKSRKPKGEYTPFPPAQPES 259
Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. Binds to RNA. Required for female germline development, cell viability during eye development and for survival of dividing cells and epithelial cells during early wing disk development.
Drosophila grimshawi (taxid: 7222)
>sp|B3MM49|KRR1_DROAN KRR1 small subunit processome component homolog OS=Drosophila ananassae GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|B4N0P7|KRR1_DROWI KRR1 small subunit processome component homolog OS=Drosophila willistoni GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|Q9VPU8|KRR1_DROME KRR1 small subunit processome component homolog OS=Drosophila melanogaster GN=dbe PE=1 SV=1 Back     alignment and function description
>sp|B3N899|KRR1_DROER KRR1 small subunit processome component homolog OS=Drosophila erecta GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|B4LTY6|KRR1_DROVI KRR1 small subunit processome component homolog OS=Drosophila virilis GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|B4KF66|KRR1_DROMO KRR1 small subunit processome component homolog OS=Drosophila mojavensis GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|B4G9L6|KRR1_DROPE KRR1 small subunit processome component homolog OS=Drosophila persimilis GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|B4P2Y8|KRR1_DROYA KRR1 small subunit processome component homolog OS=Drosophila yakuba GN=dbe PE=3 SV=1 Back     alignment and function description
>sp|Q8BGA5|KRR1_MOUSE KRR1 small subunit processome component homolog OS=Mus musculus GN=Krr1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
346472733349 hypothetical protein [Amblyomma maculatu 0.733 0.702 0.557 6e-95
340712796340 PREDICTED: KRR1 small subunit processome 0.736 0.723 0.561 1e-94
350408959340 PREDICTED: KRR1 small subunit processome 0.736 0.723 0.552 1e-93
427780601318 Putative rrna processing protein [Rhipic 0.733 0.770 0.542 2e-92
156550594339 PREDICTED: KRR1 small subunit processome 0.736 0.725 0.564 1e-91
383847545338 PREDICTED: KRR1 small subunit processome 0.736 0.727 0.567 1e-89
321477353343 hypothetical protein DAPPUDRAFT_305506 [ 0.730 0.711 0.528 3e-87
195032987341 GH10489 [Drosophila grimshawi] gi|378548 0.727 0.712 0.524 5e-87
241111418352 rRNA processing protein, putative [Ixode 0.724 0.687 0.556 2e-86
91081317350 PREDICTED: similar to dribble CG4258-PA 0.730 0.697 0.549 8e-86
>gi|346472733|gb|AEO36211.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 185/332 (55%), Positives = 216/332 (65%), Gaps = 87/332 (26%)

Query: 2   ENAWSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPY 61
           E+AWSM++P F KEDNPH  L E                         + F T       
Sbjct: 15  ESAWSMRLPAFTKEDNPHGVLCE-------------------------SAFATL------ 43

Query: 62  IIIKARDMIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRK 121
                            +   +E+YL+ECWPLVK  L  H I AELDVIEGSMTV TTRK
Sbjct: 44  -----------------FPKYREKYLRECWPLVKKTLAEHGITAELDVIEGSMTVTTTRK 86

Query: 122 TWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIG 181
            WDPYII+KARDMIKLLSRSVPYEQA+RVL+DD+ CDI+KIG LV+N++RFVKRRQRLIG
Sbjct: 87  MWDPYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIVKIGRLVRNRERFVKRRQRLIG 146

Query: 182 PNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQG 241
           PNG TLK+IELLTNCY+LVQG TV+ALGP+K                             
Sbjct: 147 PNGTTLKAIELLTNCYVLVQGNTVSALGPYK----------------------------- 177

Query: 242 QTVAALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFK 301
                     GL  VR+IVEDTMKNIHP+YNIKALMIKRELAKDP L+NENW+RFLP+FK
Sbjct: 178 ----------GLQHVRKIVEDTMKNIHPVYNIKALMIKRELAKDPNLRNENWDRFLPHFK 227

Query: 302 SKTLSKRKMPKKRKTKSEYTPFPPPQPESEAN 333
           ++TLSKRK PKK++TK EYTPFPPPQPES+ +
Sbjct: 228 AQTLSKRKKPKKQRTKGEYTPFPPPQPESKMD 259

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340712796|ref|XP_003394941.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus terrestris] Back     alignment and taxonomy information
>gi|350408959|ref|XP_003488565.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus impatiens] Back     alignment and taxonomy information
>gi|427780601|gb|JAA55752.1| Putative rrna processing protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|156550594|ref|XP_001604019.1| PREDICTED: KRR1 small subunit processome component homolog [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383847545|ref|XP_003699413.1| PREDICTED: KRR1 small subunit processome component homolog [Megachile rotundata] Back     alignment and taxonomy information
>gi|321477353|gb|EFX88312.1| hypothetical protein DAPPUDRAFT_305506 [Daphnia pulex] Back     alignment and taxonomy information
>gi|195032987|ref|XP_001988598.1| GH10489 [Drosophila grimshawi] gi|378548394|sp|B4JDU5.1|KRR1_DROGR RecName: Full=KRR1 small subunit processome component homolog; AltName: Full=KRR-R motif-containing protein 1; AltName: Full=Protein dribble gi|193904598|gb|EDW03465.1| GH10489 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|241111418|ref|XP_002399277.1| rRNA processing protein, putative [Ixodes scapularis] gi|215492943|gb|EEC02584.1| rRNA processing protein, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|91081317|ref|XP_969842.1| PREDICTED: similar to dribble CG4258-PA [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
FB|FBgn0020305345 dbe "dribble" [Drosophila mela 0.634 0.614 0.535 8.8e-61
UNIPROTKB|F1N9P9375 KRR1 "KRR1 small subunit proce 0.443 0.394 0.641 1.4e-52
RGD|1306183387 Krr1 "KRR1, small subunit (SSU 0.673 0.581 0.495 5.4e-55
MGI|MGI:1289274380 Krr1 "KRR1, small subunit (SSU 0.673 0.592 0.5 4.2e-55
UNIPROTKB|Q13601381 KRR1 "KRR1 small subunit proce 0.673 0.590 0.495 1.4e-54
UNIPROTKB|Q3B7L9382 KRR1 "KRR1 small subunit proce 0.673 0.589 0.495 1.4e-54
UNIPROTKB|F1SGD9375 KRR1 "KRR1 small subunit proce 0.673 0.6 0.495 3.7e-54
ZFIN|ZDB-GENE-060623-10398 krr1 "KRR1, small subunit (SSU 0.491 0.412 0.616 6.7e-49
UNIPROTKB|E2R869380 KRR1 "KRR1 small subunit proce 0.673 0.592 0.491 3.7e-54
TAIR|locus:2150818391 AT5G08420 [Arabidopsis thalian 0.422 0.360 0.652 3.7e-48
FB|FBgn0020305 dbe "dribble" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 547 (197.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 121/226 (53%), Positives = 153/226 (67%)

Query:    69 MIKLLSRSVPYEPLKEEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYII 128
             M++  S +  +   +E YLKE WPLV+  L  H +KAELD++EGSM V T+RKTWDPYII
Sbjct:    36 MVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWDPYII 95

Query:   129 IKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKRRQRLIGPNGCTLK 188
             IKARDMIKL++RSVP+EQA RVLQDDI CDIIKIGNLV  K++FVKRRQRLIGPNG TLK
Sbjct:    96 IKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLK 155

Query:   189 SIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALG 248
             SIELLT+CY+LVQG TV+ALGP+KGL Q         L   E + N + +     + AL 
Sbjct:   156 SIELLTDCYVLVQGNTVSALGPYKGLQQVR----DIVL---ETMNNVHPIYN---IKALM 205

Query:   249 PHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWE 294
               + L++  R+  +      P +  K +  KR   K PK+K +  E
Sbjct:   206 IKRELMKDPRLANEDWSRFLPKFKNKNIS-KR---KQPKVKKQKKE 247
GO:0005654 "nucleoplasm" evidence=IDA
GO:0006364 "rRNA processing" evidence=IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0003723 "RNA binding" evidence=IEA
UNIPROTKB|F1N9P9 KRR1 "KRR1 small subunit processome component" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1306183 Krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1289274 Krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q13601 KRR1 "KRR1 small subunit processome component homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3B7L9 KRR1 "KRR1 small subunit processome component homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGD9 KRR1 "KRR1 small subunit processome component" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060623-10 krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R869 KRR1 "KRR1 small subunit processome component" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2150818 AT5G08420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25586KRR1_YEASTNo assigned EC number0.56270.61370.6487yesN/A
Q54UU6KRR1_DICDINo assigned EC number0.55100.61670.5508yesN/A
Q13601KRR1_HUMANNo assigned EC number0.57730.67660.5931yesN/A
Q9VPU8KRR1_DROMENo assigned EC number0.52250.73650.7130yesN/A
O74777KRR1_SCHPONo assigned EC number0.55370.63170.6452yesN/A
Q8BGA5KRR1_MOUSENo assigned EC number0.57670.68260.6yesN/A
Q3B7L9KRR1_BOVINNo assigned EC number0.57730.67660.5916yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
COG1094194 COG1094, COG1094, Predicted RNA-binding protein (c 2e-41
TIGR03665172 TIGR03665, arCOG04150, arCOG04150 universal archae 4e-14
PRK13763180 PRK13763, PRK13763, putative RNA-processing protei 9e-13
COG1094194 COG1094, COG1094, Predicted RNA-binding protein (c 4e-09
>gnl|CDD|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information 
 Score =  142 bits (360), Expect = 2e-41
 Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 2/148 (1%)

Query: 69  MIKLLSRSVPYEPLKEEYLKECWPLVKNALELH-FIKAELDVIEGSMTVFTTRKTWDPYI 127
             +  S +V     +   L   W  VK A+E    +K  +D   GS+T+ TTRKT DP  
Sbjct: 4   FAEKSSEAVKIPKDRIGVLIGKWGEVKKAIEEKTGVKLRIDSKTGSVTIRTTRKTEDPLA 63

Query: 128 IIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQR-FVKRRQRLIGPNGCT 186
           ++KARD++K + R  P E+A+++L+DD   ++I + ++V        + + R+IG  G T
Sbjct: 64  LLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGRIIGREGKT 123

Query: 187 LKSIELLTNCYMLVQGQTVAALGPHKGL 214
            ++IE LT  Y+ V G+TVA +G  + +
Sbjct: 124 RRAIEELTGVYISVYGKTVAIIGGFEQV 151

Length = 194
>gnl|CDD|211858 TIGR03665, arCOG04150, arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>gnl|CDD|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional Back     alignment and domain information
>gnl|CDD|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
KOG2874|consensus356 100.0
COG1094194 Predicted RNA-binding protein (contains KH domains 100.0
KOG3273|consensus252 100.0
PRK13763180 putative RNA-processing protein; Provisional 100.0
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 100.0
KOG2874|consensus356 99.91
COG1094194 Predicted RNA-binding protein (contains KH domains 98.38
PRK13763180 putative RNA-processing protein; Provisional 98.3
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 98.29
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 97.96
smart0032269 KH K homology RNA-binding domain. 97.9
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 97.65
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 97.62
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 97.59
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 97.54
PRK12704 520 phosphodiesterase; Provisional 97.53
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 97.48
PRK00106 535 hypothetical protein; Provisional 97.31
KOG1676|consensus 600 97.25
PF1301443 KH_3: KH domain 96.88
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 96.52
KOG1676|consensus 600 95.83
KOG1588|consensus259 95.73
KOG2193|consensus 584 95.6
KOG2193|consensus584 95.23
PRK12705 508 hypothetical protein; Provisional 95.16
KOG2191|consensus 402 94.56
PF1308373 KH_4: KH domain; PDB: 3GKU_B. 92.62
PF1301443 KH_3: KH domain 92.51
KOG0119|consensus 554 90.6
PRK0282177 hypothetical protein; Provisional 89.93
cd0241477 jag_KH jag_K homology RNA-binding domain. The KH d 89.29
COG5176269 MSL5 Splicing factor (branch point binding protein 88.96
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 88.71
PRK0106478 hypothetical protein; Provisional 88.67
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 87.93
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 87.91
PRK0046875 hypothetical protein; Provisional 87.84
KOG2190|consensus 485 86.57
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 85.69
COG183776 Predicted RNA-binding protein (contains KH domain) 82.21
KOG1588|consensus259 81.44
COG1847208 Jag Predicted RNA-binding protein [General functio 80.97
cd0240968 KH-II KH-II (K homology RNA-binding domain, type I 80.88
>KOG2874|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.6e-91  Score=657.48  Aligned_cols=241  Identities=71%  Similarity=1.144  Sum_probs=232.4

Q ss_pred             cccCCCCCCCCCCcccchhhhhHHHHHHHhhhcceeEeeeeecceEEEecccCCCcchhhhhhHHHhhhhccccCchhhH
Q psy15011          5 WSMKIPEFKKEDNPHEYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEPLKE   84 (334)
Q Consensus         5 ~~~~~~~~~~~~~~~~ylke~w~~v~~~L~~~~i~~~ldl~egsmtV~Ttkkt~dPyiiikardlikl~sRsVpvP~~Re   84 (334)
                      |.++++.|+++|||+++++++          +|           +|+|                           |.|||
T Consensus        37 d~wki~~Fs~edn~~g~~EeS----------Sf-----------atlF---------------------------PKYRE   68 (356)
T KOG2874|consen   37 DMWKIEKFSKEDNPHGFLEES----------SF-----------ATLF---------------------------PKYRE   68 (356)
T ss_pred             hhhcccccCcccCccchhhhh----------hH-----------Hhhh---------------------------HHHHH
Confidence            334999999999999999998          77           7666                           99999


Q ss_pred             hHHhhhhhhHHHHHhhcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHHHHHHhhhccceeeEEeccc
Q psy15011         85 EYLKECWPLVKNALELHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIGN  164 (334)
Q Consensus        85 ~yLKe~W~~I~~~le~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e~AlkLL~DDi~~dIIdIk~  164 (334)
                      +||+++|+.|.++|++|++.|++|+.+|+|+|+||++|+|||+|+||+|+|++++||++++||+++|+||++||||+|+.
T Consensus        69 kYlke~wp~v~raL~e~~i~c~lDL~egsm~V~TtRkT~DPyIiikArdlIKLlaRsVp~eqAvkiLqDev~CdiIkIgn  148 (356)
T KOG2874|consen   69 KYLKECWPLVERALDEHHIKCVLDLVEGSMTVKTTRKTRDPYIIIKARDLIKLLARSVPFEQAVKILQDEVACDIIKIGN  148 (356)
T ss_pred             HHHHHHHHHHHHHHHhcCcceEEeeccceeEEeecccccCceeeeeHHHHHHHHHcCCCHHHHHHHHhhccceeeeehhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcchhccccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhccceeeeeccEE
Q psy15011        165 LVQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTV  244 (334)
Q Consensus       165 ~v~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~~~~~~V~g~tV  244 (334)
                      +++|+++|++||+||||++|.|++|||+||+|||+                                       |||+||
T Consensus       149 ~V~nkerFvKRRqRLiGpng~TLKAlelLT~CYil---------------------------------------VqG~TV  189 (356)
T KOG2874|consen  149 LVRNKERFVKRRQRLIGPNGSTLKALELLTNCYIL---------------------------------------VQGNTV  189 (356)
T ss_pred             hhccHHHHHHHHHHhcCCCchhHHHHHHHhhcEEE---------------------------------------eeCcEE
Confidence            99999999999999999999999999999999999                                       999999


Q ss_pred             EEecCCccHHHHHHHHHHHhcCCCchhHHHHHHHHHhhhcCCccccCCcccccccccccccccccCCcccccCCCCCCCC
Q psy15011        245 AALGPHKGLLQVRRIVEDTMKNIHPIYNIKALMIKRELAKDPKLKNENWERFLPNFKSKTLSKRKMPKKRKTKSEYTPFP  324 (334)
Q Consensus       245 ~iiG~~~~l~~ar~av~~li~g~hpiy~ik~l~~kr~l~~~~~~~~~~w~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (334)
                      |+||+|.||++||++|+|||+|||||||||+|||||||+|||+|+||||+||||+|++||++++|.+ |.+.|++|||||
T Consensus       190 saiGpfkGlkevr~IV~DcM~NiHPiY~IK~LmiKRel~kd~~l~ne~W~rfLP~fkkknv~k~K~~-K~~~kk~ytpfP  268 (356)
T KOG2874|consen  190 SAIGPFKGLKEVRKIVEDCMKNIHPIYNIKTLMIKRELAKDPELANEDWSRFLPQFKKKNVKKRKPK-KVKGKKEYTPFP  268 (356)
T ss_pred             EeecCcchHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcChhhccccHHHHhHHhhhhhhhhcccc-cccCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999877655 455699999999


Q ss_pred             CCCCCCCCC
Q psy15011        325 PPQPESEAN  333 (334)
Q Consensus       325 ~~~~~~~~~  333 (334)
                      |+||+|++|
T Consensus       269 p~q~~sKiD  277 (356)
T KOG2874|consen  269 PAQPPSKID  277 (356)
T ss_pred             CCcCcchhh
Confidence            999999998

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG3273|consensus Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>KOG2874|consensus Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG1676|consensus Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>KOG1676|consensus Back     alignment and domain information
>KOG1588|consensus Back     alignment and domain information
>KOG2193|consensus Back     alignment and domain information
>KOG2193|consensus Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>KOG2191|consensus Back     alignment and domain information
>PF13083 KH_4: KH domain; PDB: 3GKU_B Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>KOG0119|consensus Back     alignment and domain information
>PRK02821 hypothetical protein; Provisional Back     alignment and domain information
>cd02414 jag_KH jag_K homology RNA-binding domain Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PRK01064 hypothetical protein; Provisional Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK00468 hypothetical protein; Provisional Back     alignment and domain information
>KOG2190|consensus Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only] Back     alignment and domain information
>KOG1588|consensus Back     alignment and domain information
>COG1847 Jag Predicted RNA-binding protein [General function prediction only] Back     alignment and domain information
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2e3u_A219 Crystal Structure Analysis Of Dim2p From Pyrococcus 7e-08
>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus Horikoshii Ot3 Length = 219 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 104 KAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDDISCDIIKIG 163
           K  +D   G + + +T++T DP  + KARD++  + R    E+A R+L +    +II + 
Sbjct: 66  KITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLT 125
Query: 164 NLV--QNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALG 209
           +++    K    + R R+IG  G T + IE ++   + V G+TVA +G
Sbjct: 126 DIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIG 173

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1tua_A191 Hypothetical protein APE0754; structural genomics, 2e-46
1tua_A191 Hypothetical protein APE0754; structural genomics, 4e-10
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 7e-42
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 4e-10
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191 Back     alignment and structure
 Score =  154 bits (391), Expect = 2e-46
 Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 44/222 (19%)

Query: 77  VPYEPLKEEYLKECWPLVKNALELHF-IKAELDVIEGSMTVFTTRKTWDPYIIIKARDMI 135
           V  +P +   +      VK  +         +D     + V    +   P  ++KA +++
Sbjct: 8   VKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVV 67

Query: 136 KLLSRSVPYEQAVRVLQDDISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLT 194
           K +S   P E+A R+L++D    ++ +  +V + Q  +KR + R+               
Sbjct: 68  KAISLGFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRI--------------- 112

Query: 195 NCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLL 254
                                   IG  G   ++IE +T+ Y+ V    VA +G ++  +
Sbjct: 113 ------------------------IGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAM 148

Query: 255 QVRRIVEDTMK-NIHPIYNIKALMIKRELAKDPKLKNENWER 295
             ++ +E   +  +H         I RE+ +  +L  + W R
Sbjct: 149 AAKQAIEMLAEGRMHSTVYRHLERIMREIKRRERL--KMWAR 188
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
1tua_A191 Hypothetical protein APE0754; structural genomics, 100.0
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 100.0
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 98.91
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.88
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.82
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 98.81
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.7
1tua_A191 Hypothetical protein APE0754; structural genomics, 98.54
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 98.08
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 97.97
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 97.93
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 97.93
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 97.92
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 97.92
1x4n_A92 FAR upstream element binding protein 1; KH domain, 97.91
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.9
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 97.85
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 97.84
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 97.83
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 97.82
1x4m_A94 FAR upstream element binding protein 1; KH domain, 97.76
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 97.75
1we8_A104 Tudor and KH domain containing protein; structural 97.71
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 97.71
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 97.71
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 97.68
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 97.68
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.62
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 97.6
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 97.56
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.56
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 97.54
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 97.54
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 97.43
2dgr_A83 Ring finger and KH domain-containing protein 1; st 97.28
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.13
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 96.56
2cpq_A91 FragIle X mental retardation syndrome related prot 95.89
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 95.67
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 95.29
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 95.11
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 94.29
3n89_A 376 Defective in GERM LINE development protein 3, ISO; 90.83
3n89_A376 Defective in GERM LINE development protein 3, ISO; 89.1
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
Probab=100.00  E-value=5e-48  Score=347.87  Aligned_cols=168  Identities=20%  Similarity=0.286  Sum_probs=162.5

Q ss_pred             cccCchhhHhHHhhhhhhHHHHHh-hcceeEEEEccCCeEEEEcCCCCCChhHHHhHHHHHHHHhcCCCHHHHHHhhhcc
Q psy15011         76 SVPYEPLKEEYLKECWPLVKNALE-LHFIKAELDVIEGSMTVFTTRKTWDPYIIIKARDMIKLLSRSVPYEQAVRVLQDD  154 (334)
Q Consensus        76 sVpvP~~Re~yLKe~W~~I~~~le-~~~l~i~id~~~g~V~V~tt~kT~Dp~~i~KA~D~IkAi~rGF~~e~AlkLL~DD  154 (334)
                      .|+||++|..||+..|..+++.|+ +++++++||+.+++|+|+|+++|+||++++||+|||+||+|||+++||++||+||
T Consensus         7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~Dd   86 (191)
T 1tua_A            7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEED   86 (191)
T ss_dssp             EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGSTT
T ss_pred             EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccCc
Confidence            578999999999999999999985 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeEEecccc-ccCcchhccccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhhc
Q psy15011        155 ISCDIIKIGNL-VQNKQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELLT  233 (334)
Q Consensus       155 i~~dIIdIk~~-v~n~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~~  233 (334)
                      ++||+|||+++ +.|++||+|++|||||++|+|+++||++|||||+                                  
T Consensus        87 ~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~----------------------------------  132 (191)
T 1tua_A           87 QILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYIN----------------------------------  132 (191)
T ss_dssp             EEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEE----------------------------------
T ss_pred             ceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEE----------------------------------
Confidence            99999999999 7899999999999999999999999999999999                                  


Q ss_pred             cceeeeeccEEEEecCCccHHHHHHHHHHHhcC-CC-chhHHHHHHHHHhhh
Q psy15011        234 NCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKN-IH-PIYNIKALMIKRELA  283 (334)
Q Consensus       234 ~~~~~V~g~tV~iiG~~~~l~~ar~av~~li~g-~h-piy~ik~l~~kr~l~  283 (334)
                           |||+||+|+|+|+++++||+||++||.| +| |||++++.+ ++||.
T Consensus       133 -----v~~~~v~i~G~~~~i~~Ar~~i~~li~g~~h~~vy~~~~~~-~~~~k  178 (191)
T 1tua_A          133 -----VGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERI-MREIK  178 (191)
T ss_dssp             -----ECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHH
T ss_pred             -----EcCCEEEEEeChHHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHHHH
Confidence                 9999999999999999999999999999 69 899999998 78874
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1tuaa2104 d.51.1.1 (A:85-188) Hypothetical protein APE0754 { 6e-16
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 104 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 45/145 (31%)

Query: 154 DISCDIIKIGNLVQNKQRFVKR-RQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHK 212
           D    ++ +  +V + Q  +KR + R+IG                               
Sbjct: 1   DQILVVVDLKQVVGDSQNHLKRIKGRIIG------------------------------- 29

Query: 213 GLLQSNIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHP--I 270
                     G   ++IE +T+ Y+ V    VA +G ++  +  ++ +E   +      +
Sbjct: 30  --------EGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTV 81

Query: 271 YNIKALMIKRELAKDPKLKNENWER 295
           Y      I RE+ +  +L  + W R
Sbjct: 82  YRHLE-RIMREIKRRERL--KMWAR 103

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 99.88
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 99.07
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 98.03
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 97.81
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 97.71
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 97.68
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.61
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.59
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 97.54
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 97.53
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.52
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 97.51
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 97.47
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 97.42
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 97.41
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 97.41
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 97.35
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.28
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.27
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 97.27
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.25
d2cpqa178 Fragile X mental retardation syndrome related prot 97.12
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 97.1
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 96.98
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 96.37
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 96.29
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 93.66
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 93.01
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 92.53
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 90.7
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.88  E-value=1.4e-24  Score=177.50  Aligned_cols=100  Identities=22%  Similarity=0.405  Sum_probs=91.3

Q ss_pred             cceeeEEeccccccC-cchhccccceeeCCCcchHHHHHHhhceEEEecceeeeeecCCccccccccCCCCccchhhhhh
Q psy15011        154 DISCDIIKIGNLVQN-KQRFVKRRQRLIGPNGCTLKSIELLTNCYMLVQGQTVAALGPHKGLLQSNIGPNGCTLKSIELL  232 (334)
Q Consensus       154 Di~~dIIdIk~~v~n-~~~l~R~rGRIIG~~GkTkkaIE~lT~~~I~V~gktV~IIG~~~~ik~~~~g~~g~~~~~~e~~  232 (334)
                      |++|+||||++++++ ++++.|.+|||||++|+|+++||++|||+|.                                 
T Consensus         1 d~~l~iidi~~~~~~~~~~l~R~~GrIIG~gGktik~Ie~~Tg~~I~---------------------------------   47 (104)
T d1tuaa2           1 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYIN---------------------------------   47 (104)
T ss_dssp             TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEE---------------------------------
T ss_pred             CceEEEEEHHHhhcccHHHHHHHhcceeCCCcHHHHHHHHHHCCeEE---------------------------------
Confidence            689999999999975 4677888999999999999999999999999                                 


Q ss_pred             ccceeeeeccEEEEecCCccHHHHHHHHHHHhcCCCc--hhHHHHHHHHHhhhcCCccccCCccc
Q psy15011        233 TNCYMLVQGQTVAALGPHKGLLQVRRIVEDTMKNIHP--IYNIKALMIKRELAKDPKLKNENWER  295 (334)
Q Consensus       233 ~~~~~~V~g~tV~iiG~~~~l~~ar~av~~li~g~hp--iy~ik~l~~kr~l~~~~~~~~~~w~~  295 (334)
                            |+|+||+++|+++++..|+++|++|+.|++|  +|+..+ ..+|||..+..+  +.|+|
T Consensus        48 ------I~d~~v~iig~~e~i~~A~~~Ie~li~~~e~g~VY~~le-~~~~elk~~~~~--~~w~~  103 (104)
T d1tuaa2          48 ------VGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLE-RIMREIKRRERL--KMWAR  103 (104)
T ss_dssp             ------ECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHHH--HHHHH
T ss_pred             ------EeCCeEEEEECchhHHHHHHHHHHHHcCCCccHHHHHHH-HHHHHHHHHHHH--Hhhcc
Confidence                  9999999999999999999999999999876  887776 889999988876  67986
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure