Psyllid ID: psy15032

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MSISTAFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDSEWLA
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHHHccEEEEEEcccccccHHHHEEccccEEEEEEEcccccccccHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEEccccccccEEEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEccccccccccccEEEEEEccHHHcccccccHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHcccccEEEEEEEEccccccccEcEEEEEEEEHHHHHHHHHHHHHHHcccccccEEEEEcccccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcEccccccEcccccEEcHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcc
Coil and Loop (DISEMBL)
MSISTAFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILvcfhkenypfctnfhCYLKLFSVVPRNFRLLEElehgqrgvgdgtiswglendddmtlthwtgmiigpprtpyenrmyslkiecgprypdeppqcrfvsrinmtcinntsGIVVVIMFWVMIEAKAthypvdlktgtpdqVYLIVCVLIRYqvdltdrpfqpylsglpdsewla
Flexible Loop (DISEMBL)
msistafahrhrvfAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEElehgqrgvgdgtisWGLENDDDMTLTHWTGmiigpprtpyENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYpvdlktgtpdQVYLIVCVLIRYQVDLTDRpfqpylsglpdsewla
Low Complexity Region (SEG)
MSISTAFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDSEWLA
Disordered region (IsUnstruct)
*****AFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL**********
Disordered Region (DISOPRED)
*******AHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELE**********ISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLP*SEWL*
Disordered Region (DISEMBL)
MSISTAFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDSEWLA
Disordered Region (DISPRO)
**ISTAFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDS*WL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSISTAFAHRHRVFAPYLLYQIQMKGIKKITLKHSINICALRIFHQESSTILVCFHKENYPFCTNFHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDSEWLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q5R6C9	145	Ubiquitin-conjugating enz	yes	N/A	0.398	0.620	0.777	8e-40
Q15819	145	Ubiquitin-conjugating enz	yes	N/A	0.398	0.620	0.777	8e-40
Q3SZ43	145	Ubiquitin-conjugating enz	yes	N/A	0.398	0.620	0.777	8e-40
Q5F3Z3	144	Ubiquitin-conjugating enz	yes	N/A	0.398	0.625	0.766	3e-39
Q9D2M8	145	Ubiquitin-conjugating enz	yes	N/A	0.398	0.620	0.766	5e-39
Q7M767	145	Ubiquitin-conjugating enz	yes	N/A	0.398	0.620	0.766	5e-39
Q9CZY3	147	Ubiquitin-conjugating enz	no	N/A	0.464	0.714	0.657	2e-38
Q90879	145	Ubiquitin-conjugating enz	no	N/A	0.398	0.620	0.755	3e-38
Q13404	147	Ubiquitin-conjugating enz	no	N/A	0.398	0.612	0.755	4e-38
Q3SZ52	147	Ubiquitin-conjugating enz	no	N/A	0.398	0.612	0.755	4e-38

>sp|Q5R6C9|UB2V2_PONAB Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo abelii GN=UBE2V2 PE=2 SV=1

 Score =  163 bits (413), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 69  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.
Pongo abelii (taxid: 9601)

>sp|Q15819|UB2V2_HUMAN Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4

 Score =  163 bits (413), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 69  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q3SZ43|UB2V2_BOVIN Ubiquitin-conjugating enzyme E2 variant 2 OS=Bos taurus GN=UBE2V2 PE=2 SV=3

 Score =  163 bits (413), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 69  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Bos taurus (taxid: 9913)

>sp|Q5F3Z3|UB2V2_CHICK Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallus gallus GN=UBE2V2 PE=2 SV=1

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 8   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 67

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN++G+V
Sbjct: 68  CGPKYPEAPPTVRFVTKINMNGINNSNGMV 97

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Gallus gallus (taxid: 9031)

>sp|Q9D2M8|UB2V2_MOUSE Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus musculus GN=Ube2v2 PE=2 SV=4

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CG +YP+ PP  RFV++INM  INN+SG+V
Sbjct: 69  CGSKYPEAPPSVRFVTKINMNGINNSSGMV 98

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Mus musculus (taxid: 10090)

>sp|Q7M767|UB2V2_RAT Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattus norvegicus GN=Ube2v2 PE=1 SV=3

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CG +YP+ PP  RFV++INM  INN+SG+V
Sbjct: 69  CGSKYPEAPPSVRFVTKINMNGINNSSGMV 98

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|Q9CZY3|UB2V1_MOUSE Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 89/105 (84%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 11  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 70

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATH 180
           CGP+YP+ PP  RFV+R+NM+ +++++G+V      V+ + + +H
Sbjct: 71  CGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSH 115

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation (By similarity). Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Mus musculus (taxid: 10090)

>sp|Q90879|UB2V1_CHICK Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallus gallus GN=UBE2V1 PE=2 SV=2

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 68

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 69  CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 98

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Gallus gallus (taxid: 9031)

>sp|Q13404|UB2V1_HUMAN Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 11  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 70

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 71  CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through Lys-63. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q3SZ52|UB2V1_BOVIN Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 11  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 70

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 71  CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
357619274	144	hypothetical protein KGM_06034 [Danaus p	0.402	0.631	0.857	3e-42
156546773	144	PREDICTED: ubiquitin-conjugating enzyme	0.402	0.631	0.857	7e-42
48138568	144	PREDICTED: ubiquitin-conjugating enzyme	0.402	0.631	0.857	1e-41
322802299	187	hypothetical protein SINV_09396 [Solenop	0.486	0.588	0.714	4e-41
307179132	144	Ubiquitin-conjugating enzyme E2 variant	0.402	0.631	0.846	5e-41
158286581	142	AGAP006937-PA [Anopheles gambiae str. PE	0.402	0.640	0.846	7e-41
242012271	148	ubiquitin-conjugating enzyme E2 variant,	0.429	0.655	0.77	8e-41
332031594	144	Ubiquitin-conjugating enzyme E2 variant	0.402	0.631	0.835	1e-40
157130788	143	ubiquitin-conjugating enzyme [Aedes aegy	0.402	0.636	0.835	1e-40
240848753	143	ubiquitin-conjugating enzyme-like [Acyrt	0.402	0.636	0.824	2e-40

>gi|357619274|gb|EHJ71918.1| hypothetical protein KGM_06034 [Danaus plexippus]

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           VVPRNFRLLEELE GQ+GVGDGTISWGLE+DDDMTLTHWTGMIIGPPRTPYENRMYSLKI
Sbjct: 9   VVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 68

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ECG RYPDEPP  RF+SRINM C+N+ +G+V
Sbjct: 69  ECGTRYPDEPPTARFISRINMNCVNSQTGLV 99

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546773|ref|XP_001607297.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like [Nasonia vitripennis]

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 85/91 (93%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           VVPRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI
Sbjct: 9   VVPRNFRLLEELEQGQKGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 68

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           +CG RYPD+ P  RF+SRINM+CIN+T+G V
Sbjct: 69  DCGQRYPDDAPSVRFLSRINMSCINSTTGAV 99

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48138568|ref|XP_393411.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like isoform 1 [Apis mellifera] gi|340719805|ref|XP_003398336.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like [Bombus terrestris] gi|350410249|ref|XP_003488993.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like [Bombus impatiens] gi|380015186|ref|XP_003691588.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like [Apis florea] gi|383848147|ref|XP_003699713.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like [Megachile rotundata]

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 84/91 (92%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           VVPRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI
Sbjct: 9   VVPRNFRLLEELEQGQKGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 68

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           +CG RYPD+ P  RF+SRINM CIN+T+G V
Sbjct: 69  DCGQRYPDDAPNVRFLSRINMNCINSTTGAV 99

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802299|gb|EFZ22695.1| hypothetical protein SINV_09396 [Solenopsis invicta]

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 89/112 (79%), Gaps = 2/112 (1%)

Query: 56  HKENYPFCTNFHCYLKLFS--VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHW 113
            K+N   C  +       S  V+PRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHW
Sbjct: 31  RKKNTAPCQKYEIMAVPNSGVVMPRNFRLLEELEQGQKGVGDGTISWGLENDDDMTLTHW 90

Query: 114 TGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           TGMIIGPPRTPYENRMYSLKI+CG RYPD+ P  RF+SRINM CIN+ +G V
Sbjct: 91  TGMIIGPPRTPYENRMYSLKIDCGQRYPDDAPNVRFLSRINMNCINSATGAV 142

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179132|gb|EFN67604.1| Ubiquitin-conjugating enzyme E2 variant 2 [Camponotus floridanus] gi|307213098|gb|EFN88620.1| Ubiquitin-conjugating enzyme E2 variant 2 [Harpegnathos saltator]

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 83/91 (91%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           VVPRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI
Sbjct: 9   VVPRNFRLLEELEQGQKGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 68

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           +CG RYPD+ P  RF+SRINM CIN+ +G V
Sbjct: 69  DCGQRYPDDAPNVRFLSRINMNCINSATGAV 99

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286581|ref|XP_001688097.1| AGAP006937-PA [Anopheles gambiae str. PEST] gi|158286583|ref|XP_001688098.1| AGAP006937-PB [Anopheles gambiae str. PEST] gi|158286585|ref|XP_308820.3| AGAP006937-PC [Anopheles gambiae str. PEST] gi|157020536|gb|EDO64746.1| AGAP006937-PA [Anopheles gambiae str. PEST] gi|157020537|gb|EDO64747.1| AGAP006937-PB [Anopheles gambiae str. PEST] gi|157020538|gb|EAA04120.4| AGAP006937-PC [Anopheles gambiae str. PEST]

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           VVPRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI
Sbjct: 7   VVPRNFRLLEELEAGQKGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 66

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ECG RYPDEPP  +F+S+IN+ CIN+ +G+V
Sbjct: 67  ECGERYPDEPPTLKFLSKININCINSQNGVV 97

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012271|ref|XP_002426857.1| ubiquitin-conjugating enzyme E2 variant, putative [Pediculus humanus corporis] gi|212511070|gb|EEB14119.1| ubiquitin-conjugating enzyme E2 variant, putative [Pediculus humanus corporis]

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 88/100 (88%), Gaps = 3/100 (3%)

Query: 66  FHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPY 125
            HC++    VVPRNFRLL+ELE GQRGV DGTISWGLE+DDDMTLTHWTGMIIGPPRTPY
Sbjct: 7   LHCFML---VVPRNFRLLDELEQGQRGVSDGTISWGLESDDDMTLTHWTGMIIGPPRTPY 63

Query: 126 ENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ENRMYSLKIECG +YPDEPP  +F+SRINM  +NN++G+V
Sbjct: 64  ENRMYSLKIECGNKYPDEPPVAKFISRINMIGVNNSTGVV 103

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031594|gb|EGI71066.1| Ubiquitin-conjugating enzyme E2 variant 2 [Acromyrmex echinatior]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 83/91 (91%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           V+PRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI
Sbjct: 9   VMPRNFRLLEELEQGQKGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 68

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           +CG RYPD+ P  RF+SRINM CIN+ +G V
Sbjct: 69  DCGQRYPDDAPNVRFLSRINMNCINSATGAV 99

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130788|ref|XP_001662012.1| ubiquitin-conjugating enzyme [Aedes aegypti] gi|94468878|gb|ABF18288.1| ubiquitin-conjugating enzyme E2 [Aedes aegypti] gi|108871781|gb|EAT36006.1| AAEL011873-PA [Aedes aegypti]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/91 (83%), Positives = 85/91 (93%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           VVPRNFRLLEELE GQ+GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK+
Sbjct: 8   VVPRNFRLLEELEAGQKGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKV 67

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ECG RYPDEPP  +F+S+IN+ CIN+ +G+V
Sbjct: 68  ECGERYPDEPPTLKFLSKININCINSQNGVV 98

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848753|ref|NP_001155562.1| ubiquitin-conjugating enzyme-like [Acyrthosiphon pisum] gi|239792963|dbj|BAH72755.1| ACYPI004223 [Acyrthosiphon pisum]

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 83/91 (91%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           V+PRNFRLLEELE GQ+GVGDGTISWGLE DDDMTLT WTGMIIGPPRTPYENRMYSLK+
Sbjct: 8   VIPRNFRLLEELEQGQKGVGDGTISWGLEKDDDMTLTQWTGMIIGPPRTPYENRMYSLKV 67

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ECGP YPD+ P  RFV+RINM C++NTSG+V
Sbjct: 68  ECGPMYPDDAPVARFVTRINMNCVHNTSGLV 98

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
FB|FBgn0035601	145	Uev1A "Uev1A" [Drosophila mela	0.402	0.627	0.791	1.8e-39
UNIPROTKB|I3L6T2	144	UBE2V2 "Uncharacterized protei	0.398	0.625	0.788	1.5e-37
UNIPROTKB|Q3SZ43	145	UBE2V2 "Ubiquitin-conjugating	0.398	0.620	0.777	1.9e-37
UNIPROTKB|J9NY44	145	UBE2V2 "Uncharacterized protei	0.398	0.620	0.777	1.9e-37
UNIPROTKB|Q15819	145	UBE2V2 "Ubiquitin-conjugating	0.398	0.620	0.777	1.9e-37
UNIPROTKB|H0YBX6	154	UBE2V2 "Ubiquitin-conjugating	0.411	0.603	0.741	3.9e-37
UNIPROTKB|Q5F3Z3	144	UBE2V2 "Ubiquitin-conjugating	0.398	0.625	0.766	4.9e-37
MGI|MGI:1917870	145	Ube2v2 "ubiquitin-conjugating	0.398	0.620	0.766	1.3e-36
RGD|727838	145	Ube2v2 "ubiquitin-conjugating	0.398	0.620	0.766	1.3e-36
UNIPROTKB|Q7M767	145	Ube2v2 "Ubiquitin-conjugating	0.398	0.620	0.766	1.3e-36

FB|FBgn0035601 Uev1A "Uev1A" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 72/91 (79%), Positives = 83/91 (91%)

Query:    75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
             VVPRNFRLLEEL+ GQ+GVGDGTISWGLENDDDMTLT+W GMIIGPPRTP+ENRMYSLKI
Sbjct:    10 VVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIGMIIGPPRTPFENRMYSLKI 69

Query:   135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             ECG RYPDEPP  RF++++N+ CIN  +G+V
Sbjct:    70 ECGERYPDEPPTLRFITKVNINCINQNNGVV 100

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|I3L6T2 UBE2V2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 71/90 (78%), Positives = 82/90 (91%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct:     8 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKIE 67

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct:    68 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 97

GO:0031372 "UBC13-MMS2 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000729 "DNA double-strand break processing" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q3SZ43 UBE2V2 "Ubiquitin-conjugating enzyme E2 variant 2" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 70/90 (77%), Positives = 82/90 (91%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct:    69 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

GO:0031372 "UBC13-MMS2 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000729 "DNA double-strand break processing" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|J9NY44 UBE2V2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 70/90 (77%), Positives = 82/90 (91%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct:    69 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q15819 UBE2V2 "Ubiquitin-conjugating enzyme E2 variant 2" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 70/90 (77%), Positives = 82/90 (91%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct:    69 CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0006282 "regulation of DNA repair" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000729 "DNA double-strand break processing" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0031372 "UBC13-MMS2 complex" evidence=IDA

UNIPROTKB|H0YBX6 UBE2V2 "Ubiquitin-conjugating enzyme E2 variant 2" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 69/93 (74%), Positives = 83/93 (89%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:    14 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 73

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIVVVI 168
             CGP+YP+ PP  RFV++INM  INN+SG+ + +
Sbjct:    74 CGPKYPEAPPSVRFVTKINMNGINNSSGMSLTL 106

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q5F3Z3 UBE2V2 "Ubiquitin-conjugating enzyme E2 variant 2" [Gallus gallus (taxid:9031)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 69/90 (76%), Positives = 82/90 (91%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     8 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 67

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CGP+YP+ PP  RFV++INM  INN++G+V
Sbjct:    68 CGPKYPEAPPTVRFVTKINMNGINNSNGMV 97

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0000729 "DNA double-strand break processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031372 "UBC13-MMS2 complex" evidence=IEA

MGI|MGI:1917870 Ube2v2 "ubiquitin-conjugating enzyme E2 variant 2" [Mus musculus (taxid:10090)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CG +YP+ PP  RFV++INM  INN+SG+V
Sbjct:    69 CGSKYPEAPPSVRFVTKINMNGINNSSGMV 98

GO:0000729 "DNA double-strand break processing" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010976 "positive regulation of neuron projection development" evidence=ISO

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031372 "UBC13-MMS2 complex" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0042275 "error-free postreplication DNA repair" evidence=IGI

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0045739 "positive regulation of DNA repair" evidence=ISO

GO:0051965 "positive regulation of synapse assembly" evidence=ISO

RGD|727838 Ube2v2 "ubiquitin-conjugating enzyme E2 variant 2" [Rattus norvegicus (taxid:10116)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CG +YP+ PP  RFV++INM  INN+SG+V
Sbjct:    69 CGSKYPEAPPSVRFVTKINMNGINNSSGMV 98

GO:0000729 "DNA double-strand break processing" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0010976 "positive regulation of neuron projection development" evidence=IMP

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031372 "UBC13-MMS2 complex" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0042275 "error-free postreplication DNA repair" evidence=IEA;ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0045739 "positive regulation of DNA repair" evidence=IMP

GO:0051965 "positive regulation of synapse assembly" evidence=IMP

UNIPROTKB|Q7M767 Ube2v2 "Ubiquitin-conjugating enzyme E2 variant 2" [Rattus norvegicus (taxid:10116)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 69/90 (76%), Positives = 81/90 (90%)

Query:    76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
             VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct:     9 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68

Query:   136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
             CG +YP+ PP  RFV++INM  INN+SG+V
Sbjct:    69 CGSKYPEAPPSVRFVTKINMNGINNSSGMV 98

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74983	MMS2_SCHPO	No assigned EC number	0.5161	0.4115	0.6690	yes	N/A
Q54D06	UBE2V_DICDI	No assigned EC number	0.5376	0.4115	0.6739	yes	N/A
Q5F3Z3	UB2V2_CHICK	No assigned EC number	0.7666	0.3982	0.625	yes	N/A
Q9D2M8	UB2V2_MOUSE	No assigned EC number	0.7666	0.3982	0.6206	yes	N/A
Q5R6C9	UB2V2_PONAB	No assigned EC number	0.7777	0.3982	0.6206	yes	N/A
Q93YP0	UEV1A_ARATH	No assigned EC number	0.5416	0.4247	0.6075	yes	N/A
Q15819	UB2V2_HUMAN	No assigned EC number	0.7777	0.3982	0.6206	yes	N/A
Q7M767	UB2V2_RAT	No assigned EC number	0.7666	0.3982	0.6206	yes	N/A
P53152	MMS2_YEAST	No assigned EC number	0.5698	0.4115	0.6788	yes	N/A
Q3SZ43	UB2V2_BOVIN	No assigned EC number	0.7777	0.3982	0.6206	yes	N/A
Q6PEH5	UB2V2_DANRE	No assigned EC number	0.7444	0.3982	0.6206	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	6e-21
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	9e-21
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	9e-13
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	2e-11
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	5e-06
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	6e-05

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 85.0 bits (211), Expect = 6e-21
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 77  PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
               RLL+EL+  Q+    G IS G  +DD++   HW   I GPP TPYE  ++ L +E 
Sbjct: 5   SALKRLLKELKKLQKDPPPG-ISAGPVDDDNLF--HWEATITGPPDTPYEGGIFKLTLEF 61

Query: 137 GPRYPDEPPQCRFVSRINMTCINNT 161
              YP +PP+ RF ++I    ++ +
Sbjct: 62  PEDYPFKPPKVRFTTKIFHPNVDPS 86

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 84.3 bits (209), Expect = 9e-21
 Identities = 27/81 (33%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RLL+EL+  ++    G  ++ +++++   L  WTG I+GPP TPYE  ++ L IE    Y
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDEN---LLEWTGTIVGPPGTPYEGGVFKLTIEFPEDY 57

Query: 141 PDEPPQCRFVSRINMTCINNT 161
           P +PP+ +F+++I    ++++
Sbjct: 58  PFKPPKVKFITKIYHPNVDSS 78

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 63.0 bits (154), Expect = 9e-13
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL+   +    G IS    +D+   L  W   IIGP  TPYE  ++ L IE    Y
Sbjct: 1   RLQKELKELLKDPPPG-ISAFPVDDN---LFEWEVTIIGPEGTPYEGGVFKLDIEFPEDY 56

Query: 141 PDEPPQCRFVSRI 153
           P +PP+ +F ++I
Sbjct: 57  PFKPPKVKFTTKI 69

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 97  TISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI 153
            IS     ++   L  W G I GPP TPYE  ++ L IE    YP +PP+ RFV++I
Sbjct: 18  GISAEPVEEN---LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKI 71

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 110 LTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           L  WT  IIGP  +PY   ++ L I   P YP +PP+ +F ++I    IN+   I + I+
Sbjct: 30  LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDIL 89

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI 153
           H+  ++ GP  TPYE   Y L++    +YP EPP+ RF+++I
Sbjct: 33  HFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKI 74

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG0417|consensus	148		100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
KOG0419|consensus	152		100.0
KOG0426|consensus	165		99.97
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.97
KOG0424|consensus	158		99.97
KOG0425|consensus	171		99.97
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.96
KOG0418|consensus	200		99.96
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.96
KOG0421|consensus	175		99.95
KOG0422|consensus	153		99.95
KOG0427|consensus	161		99.93
KOG0894|consensus	244		99.93
KOG0416|consensus	189		99.88
KOG0420|consensus	184		99.88
KOG0423|consensus	223		99.87
KOG0428|consensus	314		99.82
KOG0895|consensus	1101		99.71
KOG0896|consensus	138		99.71
KOG0429|consensus	258		99.62
KOG0895|consensus	1101		99.59
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.88
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.74
KOG0897|consensus	122		97.71
KOG2391|consensus	365		97.14
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	95.85
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	94.33
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	93.33
smart00591	107	RWD domain in RING finger and WD repeat containing	90.89
KOG3357|consensus	167		90.22
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	88.24

>KOG0417|consensus

Probab=100.00  E-value=2.8e-37  Score=250.26  Aligned_cols=124  Identities=31%  Similarity=0.600  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .+||.+|+++|++++++| +++.+.++   |++.|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus         3 ~~RI~kE~~~l~~dp~~~-~~~~~~~d---nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI   78 (148)
T KOG0417|consen    3 SKRIIKELQDLLRDPPPG-CSAGPVGD---NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI   78 (148)
T ss_pred             HHHHHHHHHHHhcCCCCC-CccCCCCC---ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence            569999999999999988 88886555   79999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL  219 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l  219 (226)
                      + .+|+||+|   +|..    .|+|+++   |..||++|++||++|+.  |+|.-+.++.+
T Consensus        79 ~-~~G~IclD---ILk~----~WsPAl~---i~~VllsI~sLL~~Pnp--ddPL~~~ia~~  126 (148)
T KOG0417|consen   79 D-SNGRICLD---ILKD----QWSPALT---ISKVLLSICSLLSDPNP--DDPLVPDIAEL  126 (148)
T ss_pred             C-ccccchHH---hhhc----cCChhhH---HHHHHHHHHHHhcCCCC--CccccHHHHHH
Confidence            9 99999955   7874    7999886   99999999999999976  67776665543

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=249.71  Aligned_cols=122  Identities=32%  Similarity=0.531  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|+++++++ +++.+.+++  |+++|+++|.||++||||||.|++.|+||++||++||+|+|.|+|||||
T Consensus         6 a~~RL~kE~~~l~~~~~~~-~~a~p~~d~--~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN   82 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPG-ISAGPVDDD--NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN   82 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCc-eEEEECCCC--cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence            7899999999999999888 899988875  7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      || .+|+||   |++|+    +.|+|+++   +++||++|++||.+|+.  +.|++..
T Consensus        83 V~-~~G~vC---LdIL~----~~WsP~~~---l~sILlsl~slL~~PN~--~~Pln~d  127 (153)
T COG5078          83 VD-PSGNVC---LDILK----DRWSPVYT---LETILLSLQSLLLSPNP--DSPLNTE  127 (153)
T ss_pred             cC-CCCCCh---hHHHh----CCCCcccc---HHHHHHHHHHHHcCCCC--CCCCChH
Confidence            99 999999   55777    48999876   99999999999999866  5565543

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.3e-33  Score=230.98  Aligned_cols=125  Identities=26%  Similarity=0.478  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|+++++++ +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 a~~Rl~kE~~~l~~~~~~~-~~~~~~~~---nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPN   77 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSN-CSAGPSDE---NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPN   77 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCC-eEEEECCC---ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccce
Confidence            3589999999999998888 88887654   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL  219 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l  219 (226)
                      |+ .+|.||++   +|.    +.|+|+++   |++||.+|++||.+|+.  +.|+++..+.+
T Consensus        78 v~-~~G~iCl~---il~----~~W~p~~t---i~~il~~i~~ll~~P~~--~~p~n~~aa~~  126 (147)
T PLN00172         78 IN-SNGSICLD---ILR----DQWSPALT---VSKVLLSISSLLTDPNP--DDPLVPEIARV  126 (147)
T ss_pred             EC-CCCEEEcc---cCc----CCCCCcCc---HHHHHHHHHHHHhCCCC--CCchHHHHHHH
Confidence            99 89999955   665    47999876   99999999999999944  56877766554

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=4.9e-33  Score=228.95  Aligned_cols=121  Identities=24%  Similarity=0.401  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      ..|||++|+++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~-i~~~~~~~---d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN   78 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPG-IKAEPDPG---NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN   78 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCC-eEEEECCC---CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence            5799999999999999888 78877654   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |+ .+|.||++   +|+    +.|+|+++   |.+||++|++||.+|+.  +.|....
T Consensus        79 V~-~~G~iCl~---iL~----~~W~p~~t---i~~iL~~i~~ll~~P~~--~~pln~~  123 (152)
T PTZ00390         79 ID-KLGRICLD---ILK----DKWSPALQ---IRTVLLSIQALLSAPEP--DDPLDTS  123 (152)
T ss_pred             EC-CCCeEECc---cCc----ccCCCCCc---HHHHHHHHHHHHhCCCC--CCchHHH
Confidence            99 89999955   665    47999876   99999999999999844  5555443

>KOG0419|consensus

Probab=100.00  E-value=3.7e-33  Score=221.80  Aligned_cols=116  Identities=22%  Similarity=0.468  Sum_probs=107.6

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      .++-|||++|+++|+++++.| ++..+.++   |+++|.++|+||.+|||+||+|++.|+|+++||.+||.|+|.+.+||
T Consensus         3 tpArrrLmrDfkrlqedpp~g-isa~P~~~---niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH   78 (152)
T KOG0419|consen    3 TPARRRLMRDFKRLQEDPPAG-ISAAPVEN---NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH   78 (152)
T ss_pred             chHHHHHHHHHHHhhcCCCCC-ccCCCCcc---ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence            457799999999999999999 88888877   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      |||| .+|.+|+|   +|.+    .|+|.+   ++..||.+||+||++|+.
T Consensus        79 PNvy-a~G~iClD---iLqN----rWsp~Y---dva~ILtsiQslL~dPn~  118 (152)
T KOG0419|consen   79 PNVY-ADGSICLD---ILQN----RWSPTY---DVASILTSIQSLLNDPNP  118 (152)
T ss_pred             CCcC-CCCcchHH---HHhc----CCCCch---hHHHHHHHHHHHhcCCCC
Confidence            9999 89999955   7775    899965   599999999999999965

>KOG0426|consensus

Probab=99.97  E-value=1.6e-31  Score=212.69  Aligned_cols=126  Identities=21%  Similarity=0.345  Sum_probs=111.7

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .++|||++|+++|..++|+| +.+.+.++|  |+++|.|+|.||++|+|+||+|-.++.||.|||..||+++|...+|||
T Consensus         4 ~AlkRLm~EykqLt~~~P~G-IvAgP~~Ed--nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP   80 (165)
T KOG0426|consen    4 TALKRLMAEYKQLTLNPPEG-IVAGPINED--NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP   80 (165)
T ss_pred             hHHHHHHHHHHHHccCCCCc-ceeCCCCcc--ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence            47899999999999999999 788888776  899999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccc------cCCCCCCCCCCCCHHHHHHHHHHHHhccccCCC
Q psy15032        157 CINNTSGIVVVIMFWVMIEA------KATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTD  209 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w------~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~  209 (226)
                      ||+ .+|+||.++|..-++.      ..+.|+|..+   ++.||+++.++|..|+||.-
T Consensus        81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQS---vEKILLSV~SMLaEPNdESg  135 (165)
T KOG0426|consen   81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQS---VEKILLSVVSMLAEPNDESG  135 (165)
T ss_pred             ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHH---HHHHHHHHHHHHcCCCcccC
Confidence            999 9999995543322221      2467999877   99999999999999998753

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.97  E-value=6.2e-31  Score=211.95  Aligned_cols=119  Identities=29%  Similarity=0.527  Sum_probs=101.3

Q ss_pred             HHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceeeC
Q psy15032         81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINN  160 (226)
Q Consensus        81 RL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~  160 (226)
                      ||++|+++++++++.| +.+.+.+++  |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+ 
T Consensus         1 Rl~~E~~~l~~~~~~~-~~~~~~~~~--~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-   76 (140)
T PF00179_consen    1 RLQKELKELQKNPPPG-ISVQPSEDD--NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-   76 (140)
T ss_dssp             HHHHHHHHHHHSHTTT-EEEEEESTT--ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred             CHHHHHHHHhhCCCCC-EEEEECCCC--ChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence            8999999999999989 888877753  699999999999999999999999999999999999999999999999999 


Q ss_pred             CCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        161 TSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       161 ~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      .+|+||   +++|..   +.|+|+++   |.+||.+|+++|.++  ..+++.+.
T Consensus        77 ~~G~ic---l~~l~~---~~W~p~~~---i~~il~~i~~ll~~p--~~~~~~n~  119 (140)
T PF00179_consen   77 ENGRIC---LDILNP---ESWSPSYT---IESILLSIQSLLSEP--NPEDPLNE  119 (140)
T ss_dssp             TTSBBG---HGGGTT---TTC-TTSH---HHHHHHHHHHHHHST--CTTSTSSH
T ss_pred             ccccch---hhhhhc---ccCCcccc---cccHHHHHHHHHhCC--CCCCcchH
Confidence            999999   557773   45999775   999999999999888  44555544

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0424|consensus

Probab=99.97  E-value=7.4e-31  Score=211.24  Aligned_cols=124  Identities=24%  Similarity=0.366  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecC-CC-CCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLEN-DD-DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~-~d-~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ...||+.|-+.+.++.+.| +.+.+.. .| ..|++.|+|.|.|++||+||||.|.+.|.||++||..||+|+|.+++||
T Consensus         5 ~~~rl~eErk~wrk~hp~g-f~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H   83 (158)
T KOG0424|consen    5 ALNRLAEERKKWRKDHPFG-FYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH   83 (158)
T ss_pred             HHHHHHHHHHHHhhcCCCc-eeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence            5789999999999999999 5655543 33 6799999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCC
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQ  213 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q  213 (226)
                      |||| .+|.||   |++|++  ...|+|+++   |.+||++||.||.+|+-  ..|+|
T Consensus        84 PNVy-psgtVc---LsiL~e--~~~W~pait---ikqiL~gIqdLL~~Pn~--~~pAq  130 (158)
T KOG0424|consen   84 PNVY-PSGTVC---LSILNE--EKDWRPAIT---IKQILLGIQDLLDTPNI--TSPAQ  130 (158)
T ss_pred             CCcC-CCCcEe---hhhhcc--ccCCCchhh---HHHHHHHHHHHhcCCCC--CCchh
Confidence            9999 899999   678986  335999876   99999999999999954  44554

>KOG0425|consensus

Probab=99.97  E-value=9.9e-31  Score=213.18  Aligned_cols=121  Identities=25%  Similarity=0.422  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      ...-|+++|++|++++.+| +++.+.+++  |+++|.+.|.||++|+|+||.|+..+.||.+||.+||+++|+|++||||
T Consensus         6 a~~ll~~qlk~L~~~pv~g-f~~glvd~~--dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN   82 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEEPVEG-FSVGLVDDS--DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN   82 (171)
T ss_pred             hHHHHHHHHHHHhcCCCCc-cccccccCC--ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence            4567889999999999999 899998876  7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhccccc---------CCCCCCCCCCCCHHHHHHHHHHHHhccccCC
Q psy15032        158 INNTSGIVVVIMFWVMIEAK---------ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLT  208 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~---------~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~  208 (226)
                      || ++|+||   +|+|..-.         .+.|.|.-   |+++||++|.+||++|+++.
T Consensus        83 vy-~~G~vC---ISILH~pgdD~~gyE~~~erW~Pv~---tvetIllSiIsmL~~PN~~S  135 (171)
T KOG0425|consen   83 VY-EDGDVC---ISILHPPGDDPSGYELPSERWLPVQ---TVETILLSIISMLNSPNDES  135 (171)
T ss_pred             cC-CCCCEE---EEeecCCCCCcccCCChhhccCCcc---chhHhHHHHHHHHcCCCCCC
Confidence            99 999999   66776532         55799955   59999999999999998853

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.96  E-value=3.6e-29  Score=202.09  Aligned_cols=120  Identities=28%  Similarity=0.497  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceee
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN  159 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~  159 (226)
                      |||++|++++++++++| +.+.+.++   |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+
T Consensus         2 ~Rl~~E~~~l~~~~~~~-~~v~~~~~---~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~   77 (141)
T cd00195           2 KRLQKELKDLKKDPPSG-ISAEPVEE---NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD   77 (141)
T ss_pred             chHHHHHHHHHhCCCCC-eEEEECCC---ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence            79999999999999888 78887665   699999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        160 NTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       160 ~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                       .+|.||   +++|..   +.|+|+++   +.+||.+|+++|.++..  +.++++.
T Consensus        78 -~~G~ic---l~~l~~---~~W~p~~~---l~~il~~i~~~l~~p~~--~~~~n~~  121 (141)
T cd00195          78 -ENGKIC---LSILKT---HGWSPAYT---LRTVLLSLQSLLNEPNP--SDPLNAE  121 (141)
T ss_pred             -CCCCCc---hhhcCC---CCcCCcCc---HHHHHHHHHHHHhCCCC--CCchhHH
Confidence             999999   557764   25999776   99999999999997743  5565543

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418|consensus

Probab=99.96  E-value=4.1e-29  Score=209.03  Aligned_cols=115  Identities=23%  Similarity=0.406  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhHcCC---CCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         78 RNFRLLEELEHGQRGV---GDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~---~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      +.+||++|++++.+++   ..| |.+...++   |+.+.++.|.||+|||||||+|.++|++|++|||+||+|+|.|+||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~-I~ve~vn~---~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw   79 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAG-IIVEMVNE---NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW   79 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcc-eEEEEccC---ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence            6899999999999887   345 88888876   6899999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      ||||...+|.||||   +|.    +.|.|++   |+..+|++||++|+.+..
T Consensus        80 HPnVSs~tGaICLD---ilk----d~Wa~sl---TlrtvLislQalL~~pEp  121 (200)
T KOG0418|consen   80 HPNVSSQTGAICLD---ILK----DQWAASL---TLRTVLISLQALLCAPEP  121 (200)
T ss_pred             cCCCCcccccchhh---hhh----cccchhh---hHHHHHHHHHHHHcCCCC
Confidence            99999899999955   676    5899976   599999999999998843

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.96  E-value=3.5e-28  Score=197.11  Aligned_cols=121  Identities=31%  Similarity=0.570  Sum_probs=105.2

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceee
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN  159 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~  159 (226)
                      +||++|+++++++.++| +.+.+.+++  |++.|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+
T Consensus         1 ~Rl~~E~~~~~~~~~~~-~~v~~~~~~--~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~   77 (145)
T smart00212        1 KRLLKELKELLKDPPPG-ISAYPVDED--NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD   77 (145)
T ss_pred             ChHHHHHHHHHhCCCCC-eEEEECCCC--ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence            59999999999999888 776666543  799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        160 NTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       160 ~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                       .+|.||   +++|..   +.|+|+++   +.+||.+|+++|.++..  +.++++.
T Consensus        78 -~~G~ic---l~~l~~---~~W~p~~~---l~~il~~i~~~l~~p~~--~~~~n~e  121 (145)
T smart00212       78 -SSGEIC---LDILKQ---EKWSPATT---LETVLLSIQSLLSEPNP--DSPLNAD  121 (145)
T ss_pred             -CCCCEe---hhhcCC---CCCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHH
Confidence             799999   456662   47999765   99999999999998633  5555543

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421|consensus

Probab=99.95  E-value=2.2e-28  Score=197.23  Aligned_cols=117  Identities=25%  Similarity=0.353  Sum_probs=106.2

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      -.-.|||++||..|.....+| |++.+++|   |++.|.++|.||.+|+|+|-.|++.+.||.+||+.||.|+|+|+.||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~g-ISAFP~~d---nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H  103 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPG-ISAFPESD---NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH  103 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCC-cccCcCcC---ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence            346799999999999888889 88887766   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccC
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDL  207 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~  207 (226)
                      |||| ..|.||||   +|.+    .|+..+   +++.||++||+||-.|++.
T Consensus       104 PNVD-~~GnIcLD---ILkd----KWSa~Y---dVrTILLSiQSLLGEPNn~  144 (175)
T KOG0421|consen  104 PNVD-LSGNICLD---ILKD----KWSAVY---DVRTILLSIQSLLGEPNNS  144 (175)
T ss_pred             CCcc-ccccchHH---HHHH----HHHHHH---hHHHHHHHHHHHhCCCCCC
Confidence            9999 99999955   7774    788644   5999999999999999774

>KOG0422|consensus

Probab=99.95  E-value=1e-27  Score=192.27  Aligned_cols=116  Identities=23%  Similarity=0.396  Sum_probs=102.1

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||.+||++|+++.... +.-...+  +.|+..|.+.|. |.+.||..|.|+++|.||.+|||+||+|.|.|+||||
T Consensus         2 ~a~~Rl~kEL~dl~~~~~~~-~rn~~~~--e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHp   77 (153)
T KOG0422|consen    2 AAPRRLRKELADLQKNKMKF-FRNIEVD--EANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHP   77 (153)
T ss_pred             chhHHHHHHHHHHHhccHHH-Hhhhhcc--cccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccC
Confidence            36799999999999987654 3322222  338999999999 9999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      ||| +.|.||   ++++.+   +.|.|++.   ++|||+++.+++++|.-
T Consensus        78 NVD-e~gqvC---lPiis~---EnWkP~T~---teqVlqaLi~liN~P~p  117 (153)
T KOG0422|consen   78 NVD-EKGQVC---LPIISA---ENWKPATR---TEQVLQALIALINDPEP  117 (153)
T ss_pred             CCC-CCCcee---eeeeec---ccccCccc---HHHHHHHHHHHhcCCCc
Confidence            999 889999   778884   89999998   99999999999999943

>KOG0427|consensus

Probab=99.93  E-value=1.7e-25  Score=178.11  Aligned_cols=119  Identities=25%  Similarity=0.411  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc-ccc
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI-NMT  156 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI-~HP  156 (226)
                      +.+||+|||.+++.++|.| +..... +   |+..|++-+.|.+||.|+|..|.+.++||+.||++.|+|.|..++ .||
T Consensus        16 at~RLqKEl~e~q~~pP~G-~~~~v~-d---nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP   90 (161)
T KOG0427|consen   16 ATNRLQKELSEWQNNPPTG-FKHRVT-D---NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP   90 (161)
T ss_pred             HHHHHHHHHHHHhcCCCCc-ceeecc-c---chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence            6799999999999999999 676633 3   699999999999999999999999999999999999999999998 799


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCC
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQ  213 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q  213 (226)
                      +|| +||.|||   ++|.    |.|+|+++   +.+|.++|.+||++. .++++|.-
T Consensus        91 HiY-SNGHICL---~iL~----d~WsPAms---v~SvClSIlSMLSSs-~eKqrP~D  135 (161)
T KOG0427|consen   91 HIY-SNGHICL---DILY----DSWSPAMS---VQSVCLSILSMLSSS-KEKQRPTD  135 (161)
T ss_pred             cee-cCCeEEE---Eeec----ccCCcchh---hHHHHHHHHHHHccC-ccccCCCc
Confidence            999 9999995   5776    48999997   999999999999987 66666653

>KOG0894|consensus

Probab=99.93  E-value=1.8e-25  Score=190.72  Aligned_cols=123  Identities=16%  Similarity=0.223  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.|||+||++.|++++.++ +.+.+.++   ||.+||.+|.||++|||+||.|+.+|.||++||++||.|+++||-..- 
T Consensus         6 a~kRl~keY~~l~k~Pv~~-i~A~P~p~---nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF-   80 (244)
T KOG0894|consen    6 AVKRLQKEYRALCKDPVPY-IVARPNPN---NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF-   80 (244)
T ss_pred             HHHHHHHHHHHHHhCCchh-hccCCCcc---ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce-
Confidence            6899999999999999999 88888877   799999999999999999999999999999999999999999953111 


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCCCCC
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGLPDS  222 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l~~~  222 (226)
                        ..+-++||+    +.+++++.|+|.|+   +..||.++.++|.+.        -|..+++..+
T Consensus        81 --ktntRLCLS----iSDfHPdsWNP~Ws---VStILtGLlSFM~e~--------~pTtGSI~tS  128 (244)
T KOG0894|consen   81 --KTNTRLCLS----ISDFHPDSWNPGWS---VSTILTGLLSFMTED--------SPTTGSIETS  128 (244)
T ss_pred             --ecCceEEEe----ccccCcCcCCCccc---HHHHHHHHHHHHhcC--------CCccCccccc
Confidence              134579966    35567899999998   999999999999987        4565555443

>KOG0416|consensus

Probab=99.88  E-value=5.1e-23  Score=170.08  Aligned_cols=111  Identities=21%  Similarity=0.313  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .||+..|..+|....    +.+...++   ++.+++|.+.||.+|||+||+++++|++|++||++.|.|.|.++||||||
T Consensus         5 ~rRid~Dv~KL~~s~----yeV~~ind---~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI   77 (189)
T KOG0416|consen    5 KRRIDTDVMKLLMSD----YEVTIIND---GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI   77 (189)
T ss_pred             ccchhhHHHHHHhcC----CeEEEecC---cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence            489999999988663    55666665   59999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHH-HHHHhcccc
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIV-CVLIRYQVD  206 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I-~sLL~~~~~  206 (226)
                      +..+|.||   |.++++    .|+|.+.   +..|+..+ -.||.+|+.
T Consensus        78 De~SGsVC---LDViNQ----tWSp~yD---L~NIfetfLPQLL~YPNp  116 (189)
T KOG0416|consen   78 DEASGSVC---LDVINQ----TWSPLYD---LVNIFETFLPQLLRYPNP  116 (189)
T ss_pred             hhccCccH---HHHHhh----hhhHHHH---HHHHHHHHhHHHhcCCCC
Confidence            99999999   558886    7998665   76666553 578888865

>KOG0420|consensus

Probab=99.88  E-value=1.1e-22  Score=168.34  Aligned_cols=113  Identities=18%  Similarity=0.261  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEec--CCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLE--NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~--~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      +..||++|+.++.  .|++ ++....  .++. +..+..++|. |.++.|+||.|.|.+.+|+.||++||+|+|+|+|||
T Consensus        29 a~lrl~~di~eln--Lp~t-~~~s~~~~~~d~-~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H  103 (184)
T KOG0420|consen   29 ALLRLKKDILELN--LPPT-CSLSFPDSPDDL-NNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH  103 (184)
T ss_pred             HHHHHHhhhhhcc--CCCc-cccccccCCccc-ccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence            4566666666654  4444 443322  2332 3346899998 999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      |||+ .+|.||   |++|++    .|.|+.   ++.+|+.+++.||.+++.
T Consensus       104 PNId-~~GnVC---LnILRe----dW~P~l---nL~sIi~GL~~LF~epn~  143 (184)
T KOG0420|consen  104 PNID-LDGNVC---LNILRE----DWRPVL---NLNSIIYGLQFLFLEPNP  143 (184)
T ss_pred             CCcC-CcchHH---HHHHHh----cCcccc---chHHHHHHHHHHhccCCC
Confidence            9999 999999   678985    799966   499999999999999974

>KOG0423|consensus

Probab=99.87  E-value=6.1e-23  Score=170.21  Aligned_cols=115  Identities=23%  Similarity=0.353  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      -.|-|.+|+++|...+|+| |.+.+.++   |+....+.|.||.||||++|.|++.+.+..|||..||+-+|+|+|||||
T Consensus        11 vik~~~kEl~~l~~~PPdG-IKV~~Nee---D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN   86 (223)
T KOG0423|consen   11 VIKQLAKELKSLDESPPDG-IKVVVNEE---DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN   86 (223)
T ss_pred             HHHHHHHHHHhcccCCCCc-eEEecChH---HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence            4578899999999999999 78777666   5888999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccC
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDL  207 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~  207 (226)
                      |. .||+||++   .|..    .|+|+..   |..||+.|..||-.|+.|
T Consensus        87 Va-aNGEICVN---tLKk----DW~p~LG---irHvLltikCLLI~PnPE  125 (223)
T KOG0423|consen   87 VA-ANGEICVN---TLKK----DWNPSLG---IRHVLLTIKCLLIEPNPE  125 (223)
T ss_pred             cc-cCceehhh---hhhc----ccCcccc---hhhHhhhhheeeecCChH
Confidence            99 99999955   6663    7999887   999999999999988654

>KOG0428|consensus

Probab=99.82  E-value=2.1e-20  Score=162.49  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=96.3

Q ss_pred             CccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        75 ~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      +.+++|||++|.++|+ ++.+. +.+.+.+|   |+++|+++|.||.||-|+||+|+.+|.||.|||++||.+-.+|+..
T Consensus         9 KnpaVkRlmkEa~El~-~Ptd~-yha~plEd---NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG   83 (314)
T KOG0428|consen    9 KNPAVKRLMKEAAELK-DPTDH-YHAQPLED---NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG   83 (314)
T ss_pred             cCHHHHHHHHHHHHhc-Cchhh-hhhccchh---ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence            4568999999999999 66666 66677776   8999999999999999999999999999999999999999999543


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRY  203 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~  203 (226)
                      ..-   .|-+|||+   + ..++++.|.|.|+   |+..|++|..+|-.
T Consensus        84 RFE---~nkKiCLS---I-SgyHPEtWqPSWS---iRTALlAlIgFmPt  122 (314)
T KOG0428|consen   84 RFE---VNKKICLS---I-SGYHPETWQPSWS---IRTALLALIGFMPT  122 (314)
T ss_pred             cee---eCceEEEE---e-cCCCccccCcchh---HHHHHHHHHccccC
Confidence            322   34689955   3 4467899999998   99999999988754

>KOG0895|consensus

Probab=99.71  E-value=8.2e-18  Score=168.92  Aligned_cols=122  Identities=17%  Similarity=0.264  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecc--cccc
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR--INMT  156 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~Tp--I~HP  156 (226)
                      .+..+.|++.|....+.| +.++..++   .|....++|.||.||||.+|.|.|+|.||++||..||.|++.+.  .++|
T Consensus       853 ~~~~~~~~~~~~~~~~~~-~~vr~~e~---r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np  928 (1101)
T KOG0895|consen  853 AKKVQTEWKILPLSLPSG-IFVRAYED---RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP  928 (1101)
T ss_pred             HHHHHHHHHhhhccCCCc-eEEEechH---HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence            455566777778888888 66666555   47778999999999999999999999999999999999999986  4899


Q ss_pred             eeeCCCCeEEccchhhccccc---CCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032        157 CINNTSGIVVVIMFWVMIEAK---ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL  219 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~---~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l  219 (226)
                      |+| .+|+||   |++|++|.   .+-|+|..   +|.|||.+||+|+-..        +|||--.
T Consensus       929 nly-~~g~vc---~s~l~tw~g~~~e~w~~~s---~~lq~l~s~q~l~l~~--------~py~ne~  979 (1101)
T KOG0895|consen  929 NLY-EDGKVC---LSLLNTWHGRGNEVWNPSS---SILQVLVSIQGLVLNE--------EPYFNEA  979 (1101)
T ss_pred             ccc-ccccee---hhhhccccCCCccccCcch---hHHHHHHHhhhhhccc--------ccccCcc
Confidence            999 999999   77999995   56799944   5999999999999876        6777543

>KOG0896|consensus

Probab=99.71  E-value=2.9e-17  Score=131.32  Aligned_cols=131  Identities=53%  Similarity=0.896  Sum_probs=114.9

Q ss_pred             CCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        74 ~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      +++||..||.+||++=++...+|.+++...+++|.-+..|..+|.||+.|+||+.+|.++|...++||..||.|+|.|++
T Consensus         2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki   81 (138)
T KOG0896|consen    2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI   81 (138)
T ss_pred             CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence            46789999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      --+.|+..+|.|.-..+..|..|..+        |++..||..++-.+....+  ...+||
T Consensus        82 nm~gvn~~~g~Vd~~~i~~L~~W~~~--------y~~~~vl~~lr~~m~~~eN--~kl~qp  132 (138)
T KOG0896|consen   82 NMNGVNSSNGVVDPRDITVLARWQRS--------YSIKMVLGQLRKEMMSKEN--RKLPQP  132 (138)
T ss_pred             eecccccCCCccCccccchhhccccc--------chhhHHHHhhhHHHHHHHh--hcccCC
Confidence            99999988999987667788865543        3599999999986666544  566666

>KOG0429|consensus

Probab=99.62  E-value=2.5e-15  Score=129.13  Aligned_cols=120  Identities=18%  Similarity=0.145  Sum_probs=104.3

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCC--CCCeeeeecccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPD--EPPQCRFVSRIN  154 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~--~PP~V~F~TpI~  154 (226)
                      .....|+.|+..+.+...+| +.+.|...   |-+.|.++|++..| .|.||+|+|.|.+|++||.  .-|+|.|.++++
T Consensus        19 ~qey~llAEf~lV~~ekL~g-IyviPSya---n~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vf   93 (258)
T KOG0429|consen   19 LQEYALLAEFVLVCREKLDG-IYVIPSYA---NKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVF   93 (258)
T ss_pred             HHHHHHHHHHHHHHhccCCc-eEEccccc---ccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecccc
Confidence            35678999999999999999 66676665   57899999996655 9999999999999999995  469999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCC
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDR  210 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~  210 (226)
                      ||+|.+.++.+|++  ..+++|+++.-.       |.+||..+|.+|.++.+..+.
T Consensus        94 HP~icp~skeLdl~--raf~eWRk~ehh-------iwqvL~ylqriF~dpd~si~k  140 (258)
T KOG0429|consen   94 HPLICPKSKELDLN--RAFPEWRKEEHH-------IWQVLVYLQRIFYDPDVSIDK  140 (258)
T ss_pred             ccccCCCccceeHh--hhhhhhhccccH-------HHHHHHHHHHHhcCcccchhh
Confidence            99999999999976  578889887555       999999999999999887763

>KOG0895|consensus

Probab=99.59  E-value=6.6e-15  Score=148.23  Aligned_cols=141  Identities=19%  Similarity=0.254  Sum_probs=115.1

Q ss_pred             ecccCCCCCCCCccccccc-----cCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCC
Q psy15032         54 CFHKENYPFCTNFHCYLKL-----FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENR  128 (226)
Q Consensus        54 ~f~~~~~~~~~~~~~~~~s-----~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG  128 (226)
                      .+.+.+.....+++.+...     .-.....+|+++|++.+.++.++| +.+.+.+.   .|...+++|.||.||||++|
T Consensus       254 ~i~kf~~~ed~~~~~~~~k~~~~k~hs~~~skrv~ke~~llskdlpEg-ifvrp~e~---RMd~I~alIig~~gtPy~~g  329 (1101)
T KOG0895|consen  254 LIPKFKLVEDKSFHHYAKKGKSSKPHSKNWSKKVAKELKLLSKDLPEG-IFVRPDEG---RMDLIKALIIGPDGTPYADG  329 (1101)
T ss_pred             chhhhccccccccccccccCCCCCccchhhHHHHHHHhhhhcccCCCC-cccccccc---ccceeeeEEecCCCCCCcCC
Confidence            3344444444444444422     223357899999999999999999 55555544   58999999999999999999


Q ss_pred             eEEEEEEeCCCCCCCCCeeeeecc---cccceeeCCCCeEEccchhhcccccC---CCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032        129 MYSLKIECGPRYPDEPPQCRFVSR---INMTCINNTSGIVVVIMFWVMIEAKA---THYPVDLKTGTPDQVYLIVCVLIR  202 (226)
Q Consensus       129 ~f~~~I~fP~~YP~~PP~V~F~Tp---I~HPNV~~~~G~ICl~~LsiL~~w~~---~~W~Pa~s~~tI~~VL~~I~sLL~  202 (226)
                      .|.|+|.||..||..||.|+++|.   .+.||.| .+|+||   |++|.+|.+   +.|.|..+  ++.++|.+||.++.
T Consensus       330 lf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY-n~GKVc---LslLgTwtg~~~e~wtp~~~--sl~qvL~sIQ~Li~  403 (1101)
T KOG0895|consen  330 LFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY-NDGKVC---LSLLGTWTGSRREKWTPNGS--SLLQVLESIQGLIL  403 (1101)
T ss_pred             ceeeEeecCCCCCCCCceeEEeeccceeecCCcc-cCceEE---eeeeeecccccccCCCcccc--chhhhhhhhhhhhc
Confidence            999999999999999999999987   4899999 899999   678999987   77888744  79999999999998


Q ss_pred             cc
Q psy15032        203 YQ  204 (226)
Q Consensus       203 ~~  204 (226)
                      +.
T Consensus       404 ~e  405 (1101)
T KOG0895|consen  404 NE  405 (1101)
T ss_pred             cc
Confidence            76

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.88  E-value=2.9e-05  Score=62.37  Aligned_cols=72  Identities=10%  Similarity=0.125  Sum_probs=57.1

Q ss_pred             CCCeEEEEEEeCCCCCCCCCeeeeeccc---ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032        126 ENRMYSLKIECGPRYPDEPPQCRFVSRI---NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIR  202 (226)
Q Consensus       126 eGG~f~~~I~fP~~YP~~PP~V~F~TpI---~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~  202 (226)
                      .|+.+.+.|.||++||..||.|....+.   +=|||+ .+|.+|+-  .-  +-.-+.|.|.-   ++.++|.....+|.
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~--~~--~~~~D~~~P~~---~~~~~l~~a~~lL~  105 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLL--DE--ELVLDPWDPEG---IIADCLERAIRLLE  105 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEe--cC--CcccCccCHHH---HHHHHHHHHHHHHH
Confidence            6899999999999999999999888654   579999 79999941  11  11235678754   49999999999998


Q ss_pred             ccc
Q psy15032        203 YQV  205 (226)
Q Consensus       203 ~~~  205 (226)
                      +..
T Consensus       106 ~~~  108 (133)
T PF14461_consen  106 DGL  108 (133)
T ss_pred             Hhh
Confidence            653

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.74  E-value=0.00014  Score=57.92  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=53.9

Q ss_pred             CcceEEEEEeCCCCCCCCCCeEE--EEEEeCCCCCCCCCeeeeeccc-----ccceeeCCCCeEEccchhhcccccCCCC
Q psy15032        109 TLTHWTGMIIGPPRTPYENRMYS--LKIECGPRYPDEPPQCRFVSRI-----NMTCINNTSGIVVVIMFWVMIEAKATHY  181 (226)
Q Consensus       109 nl~~W~~~I~Gp~~TpYeGG~f~--~~I~fP~~YP~~PP~V~F~TpI-----~HPNV~~~~G~ICl~~LsiL~~w~~~~W  181 (226)
                      ++....++|.    -.|.|..|.  +.|.+|.+||.+||.|...-..     -+.+|+ .+|+|.   ++.|.+|..   
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~---~pyL~~W~~---   99 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVY---LPYLQNWNP---   99 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB----SHHHHT--T---
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEe---CchhccCCC---
Confidence            4555666664    357888885  5678999999999999765332     244999 999999   789997653   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        182 PVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       182 ~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                        ..+  ++.+++..++..|...
T Consensus       100 --~~s--~L~~lv~~l~~~F~~~  118 (121)
T PF05743_consen  100 --PSS--NLVDLVQELQAVFSEE  118 (121)
T ss_dssp             --TTS---HHHHHHHHHHCCCHS
T ss_pred             --CCC--CHHHHHHHHHHHHhHc
Confidence              222  5888888888777653

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG0897|consensus

Probab=97.71  E-value=4.1e-05  Score=60.29  Aligned_cols=69  Identities=12%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCCCCCCCeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccC
Q psy15032        130 YSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDL  207 (226)
Q Consensus       130 f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~  207 (226)
                      .-+.+.|+++||+.||.++...|+..-.-...+|+||   +.+|..   ..|+.++   +|+.++++|...+.....-
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIc---mellt~---qgwssay---~Ve~vi~qiaatlVkG~~r   81 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAIC---MELLTK---QGWSSAY---EVERVIMQIAATLVKGGAR   81 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhH---HHHHcc---ccccchh---hHHHHHHHHHHHhhcccee
Confidence            4456789999999999999888765444333789999   557774   5688644   5999999999998776443

>KOG2391|consensus

Probab=97.14  E-value=0.0024  Score=58.85  Aligned_cols=110  Identities=16%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEE--EEEEeCCCCCCCCCeeeeeccc----
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYS--LKIECGPRYPDEPPQCRFVSRI----  153 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~--~~I~fP~~YP~~PP~V~F~TpI----  153 (226)
                      +.+...+.....-.| +.-+....++...+++...++|.    .+|.|..|.  +.|.+.+.||..||.|...-.-    
T Consensus        23 ~~~l~lls~~~sL~P-~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~i   97 (365)
T KOG2391|consen   23 QDLLNLLSSFKSLRP-KTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMII   97 (365)
T ss_pred             HHHHHHHHhccccCc-ccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhh
Confidence            344444444444333 32444555555546666666665    578888887  4567999999999999664321    


Q ss_pred             -ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccc
Q psy15032        154 -NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQV  205 (226)
Q Consensus       154 -~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~  205 (226)
                       -|-+|+ .+|+|-   |+.|.+|     .|.-+  ++..++..+.+.|.+..
T Consensus        98 k~~~hVd-~nG~V~---LPYLh~W-----~~pss--dLv~Liq~l~a~f~~~p  139 (365)
T KOG2391|consen   98 KVHEHVD-PNGKVY---LPYLHNW-----DPPSS--DLVGLIQELIAAFSEDP  139 (365)
T ss_pred             HHhhccC-CCCeEe---chhhccC-----CCccc--hHHHHHHHHHHHhcCCC
Confidence             389999 999999   8999964     44332  68888888888887653

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=95.85  E-value=0.0064  Score=49.86  Aligned_cols=103  Identities=12%  Similarity=0.047  Sum_probs=46.6

Q ss_pred             cHHHHHHHHHHHhHcC------CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCe--EEEEEEeCCCCCCCCCeee
Q psy15032         77 PRNFRLLEELEHGQRG------VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM--YSLKIECGPRYPDEPPQCR  148 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~------~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~--f~~~I~fP~~YP~~PP~V~  148 (226)
                      ....||..|+..|-+.      .....+.+....++    +.|.+.---    .|+--.  |.+++.+|..||..||.+.
T Consensus        24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~G----T~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~   95 (161)
T PF08694_consen   24 LWVQRLKEEYQALIKYVENNKENDNDWFRLESNKEG----TRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIA   95 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-TTS----SEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCCCC----CccccEEEE----EeeeeeEEEeeecCCCccCCCCCccee
Confidence            4678999999987541      11223454433332    455433210    122233  4455678999999999997


Q ss_pred             eecc-cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHH
Q psy15032        149 FVSR-INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVY  194 (226)
Q Consensus       149 F~Tp-I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL  194 (226)
                      .-.= ---.-.| .+|+|||+ ..+-.-|-  ...|...   |...+
T Consensus        96 lPeLdGKTaKMY-RGGkIClt-~HFkPLWa--kN~PkfG---IaHal  135 (161)
T PF08694_consen   96 LPELDGKTAKMY-RGGKICLT-DHFKPLWA--KNVPKFG---IAHAL  135 (161)
T ss_dssp             -GGGTTT-SSBC-CCCBB----TTHHHHHH--CTTTT-----HHHHH
T ss_pred             ccccCCchhhhh-cCceEeee-cccchhhh--hcCCchh---HHHHH
Confidence            5210 0112335 78999987 45555564  2455554   55443

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=94.33  E-value=0.21  Score=37.51  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEe--CCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMII--GPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~--Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      .+...|+..|+.-=++. + ......   +-..+.+.+.  ....+.-....+.+.+.||++||..+|.|...++.
T Consensus         4 e~~~~EieaL~sIy~~~-~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDD-F-IEIESK---SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSS-E-SSSTSS---SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCC-c-cccccC---CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            46678888888643333 2 011111   2344555552  12333344557899999999999999999887754

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=93.33  E-value=0.99  Score=36.18  Aligned_cols=95  Identities=16%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             EEEEecCCCCCCcceEEEEEeC--CCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceeeCCC-CeE--Eccchhh
Q psy15032         98 ISWGLENDDDMTLTHWTGMIIG--PPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTS-GIV--VVIMFWV  172 (226)
Q Consensus        98 is~~~~~~d~~nl~~W~~~I~G--p~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~~~-G~I--Cl~~Lsi  172 (226)
                      +.++...++.   ..|.+ |.|  .+.+.|.+..-.+-|.+|+.||..+|.+-+..|    -+...+ |.|  |-+....
T Consensus        14 ~~~E~v~eg~---~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~   85 (122)
T PF14462_consen   14 LRWETVTEGG---RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQT   85 (122)
T ss_pred             ceEEEEEeCC---ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhh
Confidence            5555555542   44654 554  556679999999999999999999988876654    332233 334  4332222


Q ss_pred             cc--cc-----cCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032        173 MI--EA-----KATHYPVDLKTGTPDQVYLIVCVLIR  202 (226)
Q Consensus       173 L~--~w-----~~~~W~Pa~s~~tI~~VL~~I~sLL~  202 (226)
                      +.  +|     +...|.|...  ++.+.|.-|...|.
T Consensus        86 ~~G~~wQrWSRH~~~W~P~~D--~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   86 FDGRTWQRWSRHNNPWRPGVD--DLWTHLARVEHALA  120 (122)
T ss_pred             cCCeeeeeecCCCCCCCCCCC--cHHHHHHHHHHHHh
Confidence            22  12     3456888665  88888888877664

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=90.89  E-value=1.3  Score=32.87  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=22.3

Q ss_pred             CCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032        127 NRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus       127 GG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      .-.+.+.+.||++||..+|.|.+.+.
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            34588999999999999999988764

>KOG3357|consensus

Probab=90.22  E-value=0.4  Score=38.96  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCe----------EEEEEEeCCCCCCCCCe
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM----------YSLKIECGPRYPDEPPQ  146 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~----------f~~~I~fP~~YP~~PP~  146 (226)
                      ....||..|++.|-......       .+++   ..|.-+=.-++||-|-|.+          |.+++.+|-.||-..|.
T Consensus        27 ~wvqrlkeey~sli~yvqnn-------k~~d---~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape   96 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAYVQNN-------KSND---NDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE   96 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-------cccC---CcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence            36789999999986532111       1111   2244333457777776653          34555679999999998


Q ss_pred             eeeeccc-ccceeeCCCCeEEcc
Q psy15032        147 CRFVSRI-NMTCINNTSGIVVVI  168 (226)
Q Consensus       147 V~F~TpI-~HPNV~~~~G~ICl~  168 (226)
                      +..---- ----.| .+|+|||.
T Consensus        97 ialpeldgktakmy-rggkiclt  118 (167)
T KOG3357|consen   97 IALPELDGKTAKMY-RGGKICLT  118 (167)
T ss_pred             ccccccCchhhhhh-cCceEeec
Confidence            8642100 011234 68999954

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=88.24  E-value=0.73  Score=38.52  Aligned_cols=63  Identities=11%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             EEEEeCCCCCCCCCeeeeecccc---cceeeCCC-----CeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q psy15032        132 LKIECGPRYPDEPPQCRFVSRIN---MTCINNTS-----GIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRY  203 (226)
Q Consensus       132 ~~I~fP~~YP~~PP~V~F~TpI~---HPNV~~~~-----G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~  203 (226)
                      +.|.|+.+||..+|.|.+.-+.|   +||++ ..     ..+|+-    ...|.  .|.+.++   ++.+|..|..-|.+
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~----~~~~~--e~~~~~g---~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLY----EGPWS--EWRPSWG---PEGFLDRLFDWLRD  126 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEe----cCCHH--HhhhccC---HHHHHHHHHHHHHH
Confidence            56899999999999888776543   58887 44     689943    23332  4666664   99999999988876


Q ss_pred             c
Q psy15032        204 Q  204 (226)
Q Consensus       204 ~  204 (226)
                      .
T Consensus       127 a  127 (162)
T PF14457_consen  127 A  127 (162)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
1j74_A	145	Crystal Structure Of Mms2 Length = 145		6e-41
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		7e-41
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		9e-41
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		1e-40
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		2e-39
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		5e-39
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		8e-39
2gmi_B	137	Mms2UBC13~UBIQUITIN Length = 137		4e-29
1jat_B	138	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		4e-29
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		4e-22
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		5e-22
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-06
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		1e-06
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		1e-06
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		1e-06
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		2e-06
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		5e-06
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		1e-05
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-05
1jas_A	152	Hsubc2b Length = 152		2e-05
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		2e-05
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-05
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		3e-05
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		3e-05
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		3e-05
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		4e-05
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		4e-05
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		5e-05
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		5e-05
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-05
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		6e-05
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		8e-05
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		8e-05
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		1e-04
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		1e-04
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-04
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-04
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		1e-04
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		1e-04
3jvz_A	146	E2~ubiquitin-Hect Length = 146		1e-04
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-04
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-04
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		2e-04
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-04
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-04
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-04
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		2e-04
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		2e-04
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-04
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		2e-04
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-04
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-04
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		2e-04
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-04
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-04
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-04
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-04
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-04
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		6e-04
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		6e-04
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-04
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		6e-04
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		7e-04

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score =  163 bits (413), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 9   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 68
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 69  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 14  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 73
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 74  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 103

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 4   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 63
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 64  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 93

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 82/90 (91%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLK+E
Sbjct: 3   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE 62
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  INN+SG+V
Sbjct: 63  CGPKYPEAPPSVRFVTKINMNGINNSSGMV 92

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 85/100 (85%), Gaps = 3/100 (3%)
Query: 66  FHCYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPY 125
           FHC       VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT Y
Sbjct: 27  FHCK---GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY 83
Query: 126 ENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ENR+YSLKIECGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 84  ENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 82/90 (91%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 24  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 83
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 84  CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score =  156 bits (395), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 67/90 (74%), Positives = 82/90 (91%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMI+GPPRT YENR+YSLKIE
Sbjct: 6   VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIE 65
Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 66  CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95

>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 71/93 (76%)
Query: 73  FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSL 132
            S VPRNFRLLEELE G++G G  + S+GL + DD+T+T W G I+GPP + +ENR+YSL
Sbjct: 1   MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 60
Query: 133 KIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
            I+CGP YPD PP+  F+S+IN+ C+N T+G V
Sbjct: 61  SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 93

>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 71/93 (76%)
Query: 73  FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSL 132
            S VPRNFRLLEELE G++G G  + S+GL + DD+T+T W G I+GPP + +ENR+YSL
Sbjct: 2   MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 133 KIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
            I+CGP YPD PP+  F+S+IN+ C+N T+G V
Sbjct: 62  SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 94

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           +VPR+FRLL+ELE GQ+G     +S+GLE+ DD+TL++W+  I G P T +ENR+YSL I
Sbjct: 23  IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 82
Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
            C   YPD PP  +F ++I M+C++N   ++
Sbjct: 83  FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 113

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 65/91 (71%)
Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
           +VPR+FRLL+ELE GQ+G     +S+GLE+ DD+TL++W+  I G P T +ENR+YSL I
Sbjct: 19  IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78
Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
            C   YPD PP  +F ++I M+C++N   ++
Sbjct: 79  FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 109

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           D   T   G I GPP TPYE   Y L+I+    YP  PP+ RF+++I    I++ +G +
Sbjct: 37  DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           D   T   G I GPP TPYE   Y L+I+    YP  PP+ RF+++I    I++ +G +
Sbjct: 35  DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           D   T   G I GPP TPYE   Y L+I+    YP  PP+ RF+++I    I++ +G +
Sbjct: 34  DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           D   T   G I GPP TPYE   Y L+I+    YP  PP+ RF+++I    I++ +G +
Sbjct: 86  DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           D   T   G I GPP TPYE   Y L+I+    YP  PP+ RF+++I    I++ +G +
Sbjct: 50  DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL+   R       S G   DD   L HW   I+GPP +PY+  ++ L I     Y
Sbjct: 8   RIQKELQDLGRDP-PAQCSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           P +PP+  F +RI    IN+   I + I+
Sbjct: 64  PFKPPKVAFTTRIYHPNINSNGSICLDIL 92

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 113 WTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           W G I GP  TPYE   ++L I   P YP  PP+ +FV++I    I++ +G +
Sbjct: 77  WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI 129

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
            P   RL+ + +  +     G  +  L ++    +  W  MIIGP  TPYE+  + L +E
Sbjct: 3   TPARRRLMRDFKRMKEDAPPGVSASPLPDN----VMVWNAMIIGPADTPYEDGTFRLLLE 58
Query: 136 CGPRYPDEPPQCRFVSRI 153
               YP++PP  +F+S +
Sbjct: 59  FDEEYPNKPPHVKFLSEM 76

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
            P   RL+ + +  Q     G      EN+    +  W  +I GP  TP+E+  + L IE
Sbjct: 3   TPARRRLMRDFKRLQEDPPVGVSGAPSENN----IMQWNAVIFGPEGTPFEDGTFKLVIE 58
Query: 136 CGPRYPDEPPQCRFVSRI 153
               YP++PP  RF+S++
Sbjct: 59  FSEEYPNKPPTVRFLSKM 76

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL+  QR       S G   DD   L HW   I+GP  +PY+  ++ L I     Y
Sbjct: 10  RIQKELQDLQRDPP-AQCSAGPVGDD---LFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           P +PP+  F ++I    IN+   I + I+
Sbjct: 66  PFKPPKVAFTTKIYHPNINSNGSICLDIL 94

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 82  LLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYP 141
           L ++L   +R   DG  S GL +D+D  +  W  ++IGPP T YE   +   ++    YP
Sbjct: 8   LKKQLADMRRVPVDG-FSAGLVDDND--IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYP 64
Query: 142 DEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTG--TPDQVYLIV-- 197
            +PP+ +F+S I    I+    + + I+          H P D K G   P++ +L V  
Sbjct: 65  QKPPKMKFISEIWHPNIDKEGNVCISIL----------HDPGDDKWGYERPEERWLPVHT 114
Query: 198 --CVLIRYQVDLTDRPFQ 213
              +L+     LTD  F+
Sbjct: 115 VETILLSVISMLTDPNFE 132

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 107 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           D     W G I GP  TPYE   ++L I     YP  PP+ +FV++I    I++ +G +
Sbjct: 49  DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI 107

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
            P   RL+ + +  Q+    G IS G   D+++ L  W  +I GP  TP++   + L ++
Sbjct: 3   TPARKRLMRDFKRLQQDPPAG-IS-GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQ 58
Query: 136 CGPRYPDEPPQCRFVSRI 153
               YP++PP  RFVSR+
Sbjct: 59  FSEDYPNKPPTVRFVSRM 76

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 78  RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
           R  R+++E+   Q    D      LE   +  + H  G  +GPP TPYE   + + IE  
Sbjct: 2   RAKRIMKEI---QAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVP 58
Query: 138 PRYPDEPPQCRFVSRINMTCINNTSGIV 165
             YP +PP+ +F +++    I++ +G +
Sbjct: 59  MEYPFKPPKMQFDTKVYHPNISSVTGAI 86

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 87
Query: 166 VVIM 169
           + I+
Sbjct: 88  LDIL 91

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
             P   RL+ + +  Q     G +S     D+ +T   W  +I GP  TP+E+  + L +
Sbjct: 5   TTPSRRRLMRDFKKLQEDPPAG-VSGAPTEDNILT---WEAIIFGPQETPFEDGTFKLSL 60
Query: 135 ECGPRYPDEPPQCRFVSRI 153
           E    YP++PP  +F+S++
Sbjct: 61  EFTEEYPNKPPTVKFISKM 79

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
             P   RL+ + +  Q     G +S     D+ +T   W  +I GP  TP+E+  + L +
Sbjct: 2   TTPSRRRLMRDFKKLQEDPPAG-VSGAPTEDNILT---WEAIIFGPQETPFEDGTFKLSL 57
Query: 135 ECGPRYPDEPPQCRFVSRI 153
           E    YP++PP  +F+S++
Sbjct: 58  EFTEEYPNKPPTVKFISKM 76

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL   QR       S G   DD   L HW   I+GPP + Y+  ++ L +     Y
Sbjct: 7   RIQKELSDLQRDPP-AHCSAGPVGDD---LFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           P +PP+  F ++I    IN+   I + I+
Sbjct: 63  PFKPPKIAFTTKIYHPNINSNGSICLDIL 91

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 72  LFSVVPRNF----RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYEN 127
           +  +VPR      R+ +EL   QR       S G   DD   L HW   I+GPP + Y+ 
Sbjct: 10  MSGLVPRGSMALKRIQKELSDLQRD-PPAHCSAGPVGDD---LFHWQATIMGPPDSAYQG 65
Query: 128 RMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
            ++ L +     YP +PP+  F ++I    IN+   I + I+
Sbjct: 66  GVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 107

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL   QR       S G   DD   L HW   I+GPP + Y+  ++ L +     Y
Sbjct: 11  RIQKELSDLQRDPP-AHCSAGPVGDD---LFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           P +PP+  F ++I    IN+   I + I+
Sbjct: 67  PFKPPKIAFTTKIYHPNINSNGSICLDIL 95

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 99  SWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI 158
           S G   DD   L HW   I+GP  +PY   ++ L I     YP +PP+  F +RI    I
Sbjct: 22  SAGPVGDD---LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNI 78
Query: 159 NNTSGIVVVIM 169
           N+   I + I+
Sbjct: 79  NSNGSICLDIL 89

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 28  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSIS 85
Query: 166 VVIM 169
           + I+
Sbjct: 86  LDIL 89

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 70  LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
           +K + V+ +     + + +  RG+ +      L   D+  L+ W  +I GP  TPYEN  
Sbjct: 12  VKEYKVILKTLASDDPIANPYRGIIES-----LNPIDETDLSKWEAIISGPSDTPYENHQ 66
Query: 130 YSLKIECGPRYPDEPPQCRFVSRINMTC 157
           + + IE    YP  PP+  F+    + C
Sbjct: 67  FRILIEVPSSYPMNPPKISFMQNNILHC 94

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 70  LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
           +K + V+ +     + + +  RG+ +      L   D+  L+ W  +I GP  TPYEN  
Sbjct: 12  VKEYKVILKTLASDDPIANPYRGIIES-----LNPIDETDLSKWEAIISGPSDTPYENHQ 66
Query: 130 YSLKIECGPRYPDEPPQCRFVSRINMTC 157
           + + IE    YP  PP+  F+    + C
Sbjct: 67  FRILIEVPSSYPMNPPKISFMQNNILHC 94

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           H  G  +GPP TPYE   + + IE    YP +PP+ +F +++    I++ +G +
Sbjct: 34  HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI 87

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL   +R     + S G   DD   L HW   I+GP  +PY   ++ L I     Y
Sbjct: 6   RIAKELSDLERDPP-TSCSAGPVGDD---LYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           P +PP+  F ++I    IN    I + I+
Sbjct: 62  PFKPPKISFTTKIYHPNINANGNICLDIL 90

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFV 150
           D+  L+ W  +I GP  TPYEN  + + IE    YP  PP+  F+
Sbjct: 43  DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFM 87

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 31  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 88
Query: 166 VVIM 169
           + I+
Sbjct: 89  LDIL 92

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 27  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 84
Query: 166 VVIM 169
           + I+
Sbjct: 85  LDIL 88

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 28  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 85
Query: 166 VVIM 169
           + I+
Sbjct: 86  LDIL 89

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
           + I+
Sbjct: 88  LDIL 91

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
           + I+
Sbjct: 88  LDIL 91

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
           + I+
Sbjct: 88  LDIL 91

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 46  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIX 103
Query: 166 VVIM 169
           + I+
Sbjct: 104 LDIL 107

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 33  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 90
Query: 166 VVIM 169
           + I+
Sbjct: 91  LDIL 94

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 38  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 95
Query: 166 VVIM 169
           + I+
Sbjct: 96  LDIL 99

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 28  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIS 85
Query: 166 VVIM 169
           + I+
Sbjct: 86  LDIL 89

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 27  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 84
Query: 166 VVIM 169
           + I+
Sbjct: 85  LDIL 88

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY   ++ L I     YP +PP+  F ++I    IN+   I 
Sbjct: 48  DDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAIC 105
Query: 166 VVIM 169
           + I+
Sbjct: 106 LDIL 109

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
           + I+
Sbjct: 88  LDIL 91

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 36  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 93
Query: 166 VVIM 169
           + I+
Sbjct: 94  LDIL 97

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 38  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 95
Query: 166 VVIM 169
           + I+
Sbjct: 96  LDIL 99

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 46  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 103
Query: 166 VVIM 169
           + I+
Sbjct: 104 LDIL 107

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 110 LTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           L HW   I+GPP + Y+  ++ L +     YP +PP+  F ++I    IN+   I + I+
Sbjct: 36  LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDIL 95

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DD  L  W  +IIGPP T YE  ++   +     YP  PP+ +F++ I    ++    + 
Sbjct: 43  DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVC 102
Query: 166 VVIM 169
           + I+
Sbjct: 103 ISIL 106

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW   I+GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 V 166
           +
Sbjct: 88  L 88

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 106 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           DDM   HW    +GP  +PY+  ++ L I     YP +PP+  F +RI    IN+   I 
Sbjct: 30  DDMF--HWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC 87
Query: 166 VVIM 169
           + I+
Sbjct: 88  LDIL 91

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RLL+EL+   +    G ++ G ++++++ +  W  +I GPP TPY + +++ K+E    Y
Sbjct: 8   RLLKELQQLIKDSPPGIVA-GPKSENNIFI--WDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 141 PDEPPQCRFVSRI 153
           P  PP+  F   I
Sbjct: 65  PLSPPKLTFTPSI 77

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
            W   I+GPP + YE  ++ L I   P YP +PP+  F +RI    IN+   I + I+
Sbjct: 34  EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 91

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 78  RNFRLLE-ELEHGQRGVGDGTI------SWGLENDDDMTLTHWTGMIIGPPRTPYENRMY 130
           +N +LL    +  Q+ + D T+      S G + D+   +  W   I+GPP + YE  ++
Sbjct: 41  KNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDN---IYEWRSTILGPPGSVYEGGVF 97
Query: 131 SLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
            L I   P YP +PP+  F +RI    IN+   I + I+
Sbjct: 98  FLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 136

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           H+  +I GP  TPYE   Y L++    +YP EPP+ RF+++I    I+    I + I+
Sbjct: 32  HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL 89

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 112 HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           H+  +I GP  TPYE   Y L++    +YP EPP+ RF+++I    I+    I + I+
Sbjct: 32  HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	3e-44
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	4e-43
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	4e-43
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	5e-42
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	5e-15
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	6e-15
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	1e-14
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-14
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	4e-14
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	5e-14
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	7e-14
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-13
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-13
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-13
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-13
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	1e-13
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	3e-13
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	3e-13
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	3e-13
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-13
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	3e-13
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	5e-13
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	5e-13
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	5e-13
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	5e-13
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	7e-13
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	7e-13
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	7e-13
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	7e-13
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	9e-13
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-12
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	1e-12
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	1e-12
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	1e-12
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	1e-12
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	1e-12
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	2e-12
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	5e-12
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	2e-11
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-11
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-11
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	6e-11
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	7e-11
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	7e-11
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	9e-11
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	9e-11
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-10
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-09
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	2e-09
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	5e-08

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  143 bits (364), Expect = 3e-44
 Identities = 53/92 (57%), Positives = 71/92 (77%)

Query: 74  SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK 133
           S VPRNFRLLEELE G++G G  + S+GL + DD+T+T W G I+GPP + +ENR+YSL 
Sbjct: 3   SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 62

Query: 134 IECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           I+CGP YPD PP+  F+S+IN+ C+N T+G V
Sbjct: 63  IDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 94

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  141 bits (358), Expect = 4e-43
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query: 74  SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK 133
            +VPR+FRLL+ELE GQ+G     +S+GLE+ DD+TL++W+  I G P T +ENR+YSL 
Sbjct: 18  GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLT 77

Query: 134 IECGPRYPDEPPQCRFVSRINMTCINNTSGI 164
           I C   YPD PP  +F ++I M+C++N   +
Sbjct: 78  IFCDDNYPDSPPTVKFDTKIEMSCVDNCGRV 108

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  142 bits (359), Expect = 4e-43
 Identities = 68/91 (74%), Positives = 82/91 (90%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
            VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKI
Sbjct: 33  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ECGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 93  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  139 bits (351), Expect = 5e-42
 Identities = 68/90 (75%), Positives = 82/90 (91%)

Query: 76  VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIE 135
           VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKIE
Sbjct: 24  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 83

Query: 136 CGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           CGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 84  CGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 70.1 bits (172), Expect = 5e-15
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 78  RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
           R  R  +E+   +    +  I   L +++    T   G I GPP TPYE   Y L+I+  
Sbjct: 9   RIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 64

Query: 138 PRYPDEPPQCRFVSRINMTCINNTSG 163
             YP  PP+ RF+++I    I++ +G
Sbjct: 65  ETYPFNPPKVRFITKIWHPNISSVTG 90

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 70.7 bits (173), Expect = 6e-15
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 78  RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
           R  R  +E+   +    +  I   L +++    T   G I GPP TPYE   Y L+I+  
Sbjct: 61  RIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 116

Query: 138 PRYPDEPPQCRFVSRINMTCINNTSG 163
             YP  PP+ RF+++I    I++ +G
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTG 142

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 78  RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
           R  R  +E+   +    +  I   L +++    T   G I GPP TPYE   Y L+I+  
Sbjct: 12  RIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIP 67

Query: 138 PRYPDEPPQCRFVSRI---NMTCINNTSG 163
             YP  PP+ RF+++I   N   I++ +G
Sbjct: 68  ETYPFNPPKVRFITKIWHPN---ISSVTG 93

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++E++  +       I+    ++ D+   H  G  +GPP TPYE   + + IE    Y
Sbjct: 6   RIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 141 PDEPPQCRFVSRINMTCINNTSG 163
           P +PP+ +F +++    I++ +G
Sbjct: 63  PFKPPKMQFDTKVYHPNISSVTG 85

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 66.1 bits (162), Expect = 4e-14
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++E++  +       I+    ++ D+   H  G  +GPP TPYE   + + IE    Y
Sbjct: 5   RIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 141 PDEPPQCRFVSRINMTCINNTSG 163
           P +PP+ +F +++    I++ +G
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTG 84

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL+ E +       +G I  G  N+++     W  +I+GP  T +E  ++   +     Y
Sbjct: 7   RLMAEYKQLTLNPPEG-IVAGPMNEENFF--EWEALIMGPEDTCFEFGVFPAILSFPLDY 63

Query: 141 PDEPPQCRFVSRI 153
           P  PP+ RF   +
Sbjct: 64  PLSPPKMRFTCEM 76

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 65.8 bits (161), Expect = 7e-14
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RLL+EL+   +    G I  G ++++++    W  +I GPP TPY + +++ K+E    Y
Sbjct: 8   RLLKELQQLIKDSPPG-IVAGPKSENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDY 64

Query: 141 PDEPPQCRFVSRI 153
           P  PP+  F   I
Sbjct: 65  PLSPPKLTFTPSI 77

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
            L  +    +     G I+    ++D   +  W   I G   + ++  ++ L I     Y
Sbjct: 27  LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 82

Query: 141 PDEPPQCRFVSRI 153
              PP  +F++  
Sbjct: 83  NYAPPVVKFITIP 95

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL   Q     G ++   ++  + ++T W   + G P T YE   + L  +   RY
Sbjct: 26  RLQKELLALQNDPPPG-MTLNEKSVQN-SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83

Query: 141 PDEPPQCRFVSR 152
           P + PQ  F   
Sbjct: 84  PFDSPQVMFTGE 95

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
            LL EL+  Q    +G     L ++ D  L +W   I GPP T YE   +  +++    Y
Sbjct: 11  ALLLELKGLQEEPVEG-FRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67

Query: 141 PDEPPQCRFVSRI 153
           P  PP  RF++++
Sbjct: 68  PYSPPAFRFLTKM 80

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL+ + +  +     G +S     D+   +  W  MIIGP  TPYE+  + L +E    Y
Sbjct: 8   RLMRDFKRMKEDAPPG-VSASPLPDN---VMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 63

Query: 141 PDEPPQCRFVSRI 153
           P++PP  +F+S +
Sbjct: 64  PNKPPHVKFLSEM 76

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMT--LTHWTGMIIGPPRTPYENRMYSLKIECGP 138
           RL EE +  ++    G          D +  L  W   I G   T +   +Y + +E   
Sbjct: 8   RLQEERKKWRKDHPFG-FYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66

Query: 139 RYPDEPPQCRFVSRI 153
            YP +PP+ +F +  
Sbjct: 67  EYPSKPPKVKFPAGF 81

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMT-LTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
           RL +E +  ++    G ++   +N D    L +W   I G   TP+E  ++ L++     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70

Query: 140 YPDEPPQCRFVSRI 153
           YP  PP+C+F   +
Sbjct: 71  YPSSPPKCKFEPPL 84

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL+  +       I   +++ +      W G I GP  TPYE   ++L I     Y
Sbjct: 27  RLQKELKDIENENVQE-IDAHIKDSN---FFEWVGFIKGPEGTPYEGGHFTLAITIPNDY 82

Query: 141 PDEPPQCRFVSRI 153
           P  PP+ +FV++I
Sbjct: 83  PYNPPKIKFVTKI 95

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
            L  +L    +   +G  S GL +D+D+    W  +IIGPP T YE  ++   +     Y
Sbjct: 21  LLRRQLAELNKNPVEG-FSAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77

Query: 141 PDEPPQCRFVSRI 153
           P  PP+ +F++ I
Sbjct: 78  PLRPPKMKFITEI 90

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 81  RLLEELEHGQRGVGDGT------------ISWGLENDDDMTLTHWTGMIIGPPRTPYENR 128
           RLL+EL   Q+                  +S  +   D   +  W G I GP  TPYE  
Sbjct: 36  RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGD---IHRWRGFIAGPLGTPYEGG 92

Query: 129 MYSLKIECGPRYPDEPPQCRFVSRI 153
            ++L I   P YP  PP+ +FV++I
Sbjct: 93  HFTLDIVIPPDYPYNPPKMKFVTKI 117

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL         G I+   + D+   L  W   + GP  T YE+  Y L +E    Y
Sbjct: 13  RLQQELRTLLMSGDPG-ITAFPDGDN---LFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68

Query: 141 PDEPPQCRFVSRI 153
           P +PP  +F +  
Sbjct: 69  PYKPPVVKFTTPC 81

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 63.4 bits (155), Expect = 5e-13
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++E E        G I+    +D+   L ++   I GP ++PYE+ ++ L++     Y
Sbjct: 9   RIIKETEKLVSDPVPG-ITAEPHDDN---LRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64

Query: 141 PDEPPQCRFVSRI 153
           P E P+ RF+++I
Sbjct: 65  PMEAPKVRFLTKI 77

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 63.4 bits (155), Expect = 5e-13
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
            + +E+        DG I      +D   LT     I GP  TPY   ++ +K+  G  +
Sbjct: 17  LVYKEVTTLTADPPDG-IKVFPNEED---LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72

Query: 141 PDEPPQCRFVSRI 153
           P  PP+  F+++I
Sbjct: 73  PASPPKGYFLTKI 85

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 63.4 bits (155), Expect = 5e-13
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL+ + +  Q+    G IS   ++++   +  W  +I GP  TP++   + L ++    Y
Sbjct: 8   RLMRDFKRLQQDPPAG-ISGAPQDNN---IMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63

Query: 141 PDEPPQCRFVSRI 153
           P++PP  RFVSR+
Sbjct: 64  PNKPPTVRFVSRM 76

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL       GD  IS   E+D+   L  W G I G   T YE+  Y L +E    Y
Sbjct: 34  RLQQELMTLMMS-GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89

Query: 141 PDEPPQCRFVSRI 153
           P   P  +F++  
Sbjct: 90  PYNAPTVKFLTPC 102

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 63.1 bits (154), Expect = 7e-13
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++E +        G I    +  +     ++  +I GP  +P+E   + L++     Y
Sbjct: 9   RIIKETQRLLAEPVPG-IKAEPDESN---ARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64

Query: 141 PDEPPQCRFVSRI 153
           P   P+ RF+++I
Sbjct: 65  PMAAPKVRFMTKI 77

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 63.5 bits (155), Expect = 7e-13
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL  EL         G I+   + D    +      I+G   TPYE  ++ L++    RY
Sbjct: 8   RLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVIIPERY 63

Query: 141 PDEPPQCRFVSRI 153
           P EPPQ RF++ I
Sbjct: 64  PFEPPQIRFLTPI 76

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +E ++       G I      ++     H+  +I GP  TPYE   Y L++    +Y
Sbjct: 5   RITKETQNLANEPPPG-IMAVPVPEN---YRHFNILINGPDGTPYEGGTYKLELFLPEQY 60

Query: 141 PDEPPQCRFVSRI 153
           P EPP+ RF+++I
Sbjct: 61  PMEPPKVRFLTKI 73

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 62.2 bits (152), Expect = 7e-13
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL +          +  +  ++   +  W    +G   T Y N +Y LKI     Y
Sbjct: 10  RIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDDY 65

Query: 141 PDEPPQCRFVSRI 153
           P +PP   F+ + 
Sbjct: 66  PLKPPIVYFLQKP 78

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL +  +       +  +   +   +  W    +G   T Y N +Y +KI     Y
Sbjct: 24  RIQKELNNFLKNPPIN-CTIDVHPSN---IRIWIVQYVGLENTIYANEVYKIKIIFPDNY 79

Query: 141 PDEPPQCRFVSRI 153
           P +PP   F+ + 
Sbjct: 80  PLKPPIVYFLQKP 92

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 98  ISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI---N 154
               L N        +  M  GP  T YE  ++ + +     YP   P   F++++   N
Sbjct: 19  YDLELNNGS---TQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN 75

Query: 155 MTCINNTSG 163
              ++  SG
Sbjct: 76  ---VDEASG 81

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMT--LTHWTGMIIGPPRTPYENRMYSLKIECGP 138
           RL EE +  +R    G          D    L +W   I G P+T +E  +Y L +    
Sbjct: 14  RLQEERKQWRRDHPFG-FYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPE 72

Query: 139 RYPDEPPQCRFVSRI 153
            YP  PP+CRF   +
Sbjct: 73  EYPTRPPKCRFTPPL 87

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL            S G + D+   +  W   I+GPP + YE  ++ L I   P Y
Sbjct: 52  RIQKELADITLDPPPN-CSAGPKGDN---IYEWRSTILGPPGSVYEGGVFFLDITFTPEY 107

Query: 141 PDEPPQCRFVSRI 153
           P +PP+  F +RI
Sbjct: 108 PFKPPKVTFRTRI 120

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL+   R       S G   DD   L HW   I+GPP +PY+  ++ L I     Y
Sbjct: 8   RIQKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63

Query: 141 PDEPPQCRFVSRI 153
           P +PP+  F +RI
Sbjct: 64  PFKPPKVAFTTRI 76

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL    +       S G   DD   + HW   I+GP  +PY   ++ L I     Y
Sbjct: 25  RINKELNDLSKDPPTN-CSAGPVGDD---MFHWQATIMGPEDSPYSGGVFFLNIHFPSDY 80

Query: 141 PDEPPQCRFVSRI 153
           P +PP+  F ++I
Sbjct: 81  PFKPPKVNFTTKI 93

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 19/99 (19%)

Query: 81  RLLEELEHGQRGVGDG----------TISWGLENDDDMTLTHWTGMIIGPPRTPYENRMY 130
           R+++E +   + +               S    ++ D  L+ W  +I GP  TPYEN  +
Sbjct: 10  RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETD--LSKWEAIISGPSDTPYENHQF 67

Query: 131 SLKIECGPRYPDEPPQCRFV-SRI---NMTCINNTSGIV 165
            + IE    YP  PP+  F+ + I   N   + + +G +
Sbjct: 68  RILIEVPSSYPMNPPKISFMQNNILHCN---VKSATGEI 103

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL    R       S G   DD   + HW   I+GP  +PY+  ++ L I     Y
Sbjct: 23  RIHKELNDLARDPPAQ-CSAGPVGDD---MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78

Query: 141 PDEPPQCRFVSRI 153
           P +PP+  F +RI
Sbjct: 79  PFKPPKVAFTTRI 91

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 77  PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
            R+  L++E+   +  +          + + +   H   + + P    Y+   +  + E 
Sbjct: 14  VRDKLLVKEVAELEANLPCT-CKVHFPDPNKL---HCFQLTVTPDEGYYQGGKFQFETEV 69

Query: 137 GPRYPDEPPQCRFVSRI 153
              Y   PP+ + +++I
Sbjct: 70  PDAYNMVPPKVKCLTKI 86

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 110 LTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI---NMTCINNTSG 163
           L  +     GP  TPYE  ++ ++++   +YP + P   F+++I   N   I+  SG
Sbjct: 50  LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPN---IDEASG 103

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 105 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI---NMTCINNT 161
            D +    +     GP  TPYE+  + L ++    YP + P   F +RI   N   ++  
Sbjct: 34  SDTVA--EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN---VDER 88

Query: 162 SGIV 165
           SG V
Sbjct: 89  SGSV 92

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 104 NDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCINN 160
           +++ +       +I GP  TPY N  +   +     YP  PP     +    +   N
Sbjct: 105 DEERLD--IMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 60.3 bits (146), Expect = 6e-11
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL    R       S G   DD   + HW   I+GP  +PY+  ++ L I     Y
Sbjct: 7   RIHKELNDLARDPPAQ-CSAGPVGDD---MFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62

Query: 141 PDEPPQCRFVSRI 153
           P +PP+  F +RI
Sbjct: 63  PFKPPKVAFTTRI 75

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 13/73 (17%), Positives = 26/73 (35%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL  +L+                +  D + +    +I+ P    Y     +  ++    Y
Sbjct: 33  RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVY 92

Query: 141 PDEPPQCRFVSRI 153
           P EPP+   + +I
Sbjct: 93  PIEPPKVVCLKKI 105

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL++ELE  ++            ++ +  L  W G+I  P   PY+   + ++I     Y
Sbjct: 6   RLMKELEEIRKCGMKN-FRNIQVDEAN--LLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 141 PDEPPQCRFVSRI 153
           P +PP+  F ++I
Sbjct: 62  PFKPPKITFKTKI 74

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 57.3 bits (139), Expect = 9e-11
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++ELE  Q+      +     +D +  +  W   ++ P + PY  + ++L+I   P Y
Sbjct: 8   RVVKELEDLQKKPPPY-LRNLSSDDAN--VLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 63

Query: 141 PDEPPQCRFVSRI 153
           P +PP  +F ++I
Sbjct: 64  PFKPPMIKFTTKI 76

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 57.8 bits (140), Expect = 9e-11
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 77  PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
               R+ +++          T      + DD  L ++   +I P    Y++  +    + 
Sbjct: 26  AAQLRIQKDINELNL---PKTCDISFSDPDD--LLNFKL-VICPDEGFYKSGKFVFSFKV 79

Query: 137 GPRYPDEPPQCRFVSRI 153
           G  YP +PP+ +  + +
Sbjct: 80  GQGYPHDPPKVKCETMV 96

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +++          T      + DD  L ++   +I P    Y++  +    + G  Y
Sbjct: 10  RIQKDINELNL---PKTCDISFSDPDD--LLNFKL-VICPDEGFYKSGKFVFSFKVGQGY 63

Query: 141 PDEPPQCRFVSRI 153
           P +PP+ +  + +
Sbjct: 64  PHDPPKVKCETMV 76

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 97  TISWGLENDDDMTLTHWTGMIIGPPRTPY--ENRMYSLKIECGPRYPDEPPQCRFVSRI 153
           + +    + D +   +W   +  P  + Y      Y L +     YP EPP  RFV+ +
Sbjct: 38  STAIFSVDTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL ++    ++       +  L ++    +  W  ++ GP  TPYE   Y  K+     +
Sbjct: 18  RLKQDYLRIKKDPVPYICAEPLPSN----ILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 73

Query: 141 PDEPPQCRFVSRI 153
           P +PP    ++  
Sbjct: 74  PFKPPSIYMITPN 86

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 13/85 (15%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIG-PPRTPYENRM---------- 129
           RL++EL    R     T  + +E  +D +L  W   +    P +P  + +          
Sbjct: 31  RLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 89

Query: 130 -YSLKIECGPRYPDEPPQCRFVSRI 153
              L       +P +PP  R V  +
Sbjct: 90  YILLNFSFKDNFPFDPPFVRVVLPV 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	99.98
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.98
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	99.98
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.98
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	99.97
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	99.97
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.97
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.97
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.97
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.97
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.97
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.85
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.62
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.57
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.38
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	93.66
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	92.04
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	88.99
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	87.27
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	84.47
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	83.68
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	82.63

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=1.6e-35  Score=244.53  Aligned_cols=133  Identities=55%  Similarity=0.951  Sum_probs=112.3

Q ss_pred             cCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032         73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus        73 ~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      .+.++|.+||++|+++|++++++|.+++.+.++++.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            45678999999999999999988878888755543359999999999999999999999999999999999999999999


Q ss_pred             cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        153 INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       153 I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      ||||||+..+|+||+++|..+     +.|+|+++   |++||++|++||.+..+ .+.|..+
T Consensus       101 i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~t---i~~vL~sI~~ll~~~pn-~~~P~n~  153 (160)
T 2a4d_A          101 INMNGVNSSNGVVDPRAISVL-----AKWQNSYS---IKVVLQELRRLMMSKEN-MKLPQPP  153 (160)
T ss_dssp             CCCTTBCTTTCBBCGGGSHHH-----HTCCTTCC---HHHHHHHHHHHHTSTTT-TTCCCCC
T ss_pred             ceeCCEECCCCEEehhhcCCc-----cCCCccCc---HHHHHHHHHHHHccCCC-CCCCCCh
Confidence            999999966999996644433     36999876   99999999999975423 2445444

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=2.5e-35  Score=242.20  Aligned_cols=136  Identities=37%  Similarity=0.741  Sum_probs=117.3

Q ss_pred             ccCCccHHHHHHHHHHHhHcC-CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeee
Q psy15032         72 LFSVVPRNFRLLEELEHGQRG-VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFV  150 (226)
Q Consensus        72 s~~~~~r~rRL~kEL~~L~~~-~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~  150 (226)
                      ..+.++|.+||++||++|+++ +++| +++.+.++++.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~~~-i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~   94 (156)
T 2q0v_A           16 FQGIVPRSFRLLDELERGQKGNVSEG-VSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFD   94 (156)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCC-CCTT-EEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             CcccchHHHHHHHHHHHHHhCCCCCC-eEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEE
Confidence            355678999999999999998 5556 88888765545799999999999999999999999999999999999999999


Q ss_pred             cccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032        151 SRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL  219 (226)
Q Consensus       151 TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l  219 (226)
                      |+||||||+ .+|+||.+-|++|+     .|+|+++   |++||++|++||.+++.  ++++||.-+.+
T Consensus        95 t~i~HPNV~-~~G~icisCL~iL~-----~WsP~~t---i~~vL~sI~~ll~~Pn~--~~p~n~~aa~~  152 (156)
T 2q0v_A           95 TKIEMSCVD-NCGRVIKNNLHILK-----NWNRNYT---IETILISLRQEMLSSAN--KRLPQPNEGEV  152 (156)
T ss_dssp             BCCCCTTBC-TTSBBCGGGSHHHH-----TCCTTCC---HHHHHHHHHHHTTSTTT--TTCCCCCTTCB
T ss_pred             cccccCCCc-cCCeEehhhccccc-----CCCCcCc---HHHHHHHHHHHHhCCCC--CCcCChHHHHH
Confidence            999999999 88999322256776     3999875   99999999999999854  78888876654

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.7e-35  Score=246.45  Aligned_cols=136  Identities=22%  Similarity=0.354  Sum_probs=109.2

Q ss_pred             ccCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeec
Q psy15032         72 LFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVS  151 (226)
Q Consensus        72 s~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~T  151 (226)
                      ++....+.|||++||++|++++++| +++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        12 ~~~~~~~~~rL~kEl~~l~~~~~~g-i~~~p~~~~--nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T   88 (172)
T 2awf_A           12 SGLVPRGSLLLRRQLAELNKNPVEG-FSAGLIDDN--DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT   88 (172)
T ss_dssp             -CCCCTTHHHHHHHHHHHHHSCCTT-EEEEESSTT--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCC-EEEEECCCc--cccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccC
Confidence            4445568999999999999998888 888887644  7999999999999999999999999999999999999999999


Q ss_pred             ccccceeeCCCCeEEccchhhcccc---------cCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccCC
Q psy15032        152 RINMTCINNTSGIVVVIMFWVMIEA---------KATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSGL  219 (226)
Q Consensus       152 pI~HPNV~~~~G~ICl~~LsiL~~w---------~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~l  219 (226)
                      +||||||+ .+|+||+   ++|..|         ..+.|+|+++   |++||++|++||.+|+.  +.|+++..+++
T Consensus        89 ~i~HPNV~-~~G~ICl---siL~~~~~d~~~~~~~~~~WsP~~t---i~~vL~sI~sll~~Pn~--~~p~n~~aa~~  156 (172)
T 2awf_A           89 EIWHPNVD-KNGDVCI---SILHEPGEDKYGYEKPEERWLPIHT---VETIMISVISMLADPNG--DSPANVDAAKE  156 (172)
T ss_dssp             CCCCTTBC-TTCBBCC---GGGSCC---------CTTSCCTTCC---HHHHHHHHHHHHSCC---------------
T ss_pred             CCccCCCC-CCCcEeh---hhcCCcccccccccccCCCCCCcCc---HHHHHHHHHHHHHCcCC--CCccCHHHHHH
Confidence            99999999 8999995   567643         2368999876   99999999999999854  67888877665

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.7e-35  Score=244.37  Aligned_cols=129  Identities=22%  Similarity=0.375  Sum_probs=112.4

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|++++++| +++.+.+++  |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~a~~RL~kEl~~l~~~~~~g-i~~~~~~~~--~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (165)
T 2ucz_A            4 TAQKRLLKELQQLIKDSPPG-IVAGPKSEN--NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEESSSS--CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEECCCC--CccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence            47899999999999998888 888876543  799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccc---------cCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEA---------KATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w---------~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||+   ++|..|         ..+.|+|+++   |++||++|++||.+|+.  +.|+++..+
T Consensus        81 Nv~-~~G~iCl---~iL~~~~~~~~~~~~~~~~W~p~~~---i~~vL~si~~ll~~Pn~--~~p~n~~aa  141 (165)
T 2ucz_A           81 NIY-PNGEVCI---SILHSPGDDPNMYELAEERWSPVQS---VEKILLSVMSMLSEPNI--ESGANIDAC  141 (165)
T ss_dssp             TBC-TTSBBCC---GGGSCCCSCTTSTTTTTTSCCTTCC---HHHHHHHHHHHHHSCCG--GGCCCHHHH
T ss_pred             CCC-CCCcEee---hhhCCccccccccCCCCCCCCCcCc---HHHHHHHHHHHHhCCCC--CCchhHHHH
Confidence            999 8999995   567432         2578999876   99999999999999854  566665443

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.5e-35  Score=243.01  Aligned_cols=129  Identities=21%  Similarity=0.322  Sum_probs=113.5

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.|||++||++|++++++| +++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 ~a~~RL~kEl~~l~~~~~~g-i~~~~~~~~--nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (164)
T 3h8k_A            3 TALKRLMAEYKQLTLNPPEG-IVAGPMNEE--NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHP   79 (164)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEESSTT--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEECCCC--CccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccC
Confidence            36799999999999999888 888877654  699999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhccccc---------CCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAK---------ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~---------~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||   |++|..|.         .+.|+|+++   |++||++|++||.+++.  +.|+++..+
T Consensus        80 NV~-~~G~iC---l~iL~~~~~~~~~~~~~~~~W~p~~t---i~~vL~~i~~ll~~pn~--~~p~n~~aa  140 (164)
T 3h8k_A           80 NIY-PDGRVC---ISILHAPGDDPMGYESSAERWSPVQS---VEKILLSVVSMLAEPND--ESGANVDAS  140 (164)
T ss_dssp             TBC-TTSBBC---CGGGSCSCSCCCSCCTTCCCCCTTCC---HHHHHHHHHHHHHSCCC--SSCSSHHHH
T ss_pred             CCC-CCCcEe---eecccCcccccccccccccCCCCCCc---HHHHHHHHHHHHcCCCC--CCccCHHHH
Confidence            999 899999   45776442         378999876   99999999999999854  667665443

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.5e-35  Score=244.63  Aligned_cols=128  Identities=26%  Similarity=0.384  Sum_probs=113.9

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      +.+.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~g-i~~~~~~~---~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (169)
T 1yh2_A            3 MQRASRLKRELHMLATEPPPG-ITCWQDKD---QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH   78 (169)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCC-EEEEeCCC---chheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcc
Confidence            357899999999999998888 88887654   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      |||+ .+|+||   |++|+.|..+.|+|+++   |.+||++|++||.+++.  +.|+++..
T Consensus        79 PNv~-~~G~iC---l~iL~~~~~~~W~p~~~---i~~vL~si~~ll~~p~~--~~p~n~~a  130 (169)
T 1yh2_A           79 PNID-SAGRIC---LDVLKLPPKGAWRPSLN---IATVLTSIQLLMSEPNP--DDPLMADI  130 (169)
T ss_dssp             TTBC-TTCBBC---CGGGSCTTTSCCCTTSC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             ccCC-cCCeEe---cccccCCcccCCCCCCc---HHHHHHHHHHHHhCCCC--cchHhHHH
Confidence            9999 999999   55777666678999876   99999999999999854  56666543

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=4.4e-35  Score=235.80  Aligned_cols=129  Identities=43%  Similarity=0.821  Sum_probs=110.0

Q ss_pred             ccHHHHHHHHHHHhHcC-CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         76 VPRNFRLLEELEHGQRG-VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~-~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      ++|.+||++|+++|+++ ++.| +++.+.++++.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~-~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   83 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPES-CSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   83 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CC-EEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCC-EEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc
Confidence            46899999999999998 5666 888886654447999999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeE--EccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccC
Q psy15032        155 MTCINNTSGIV--VVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSG  218 (226)
Q Consensus       155 HPNV~~~~G~I--Cl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~  218 (226)
                      ||||+..+|+|  |   |++|+     .|+|+++   |++||++|++||.+++.  ++++||.-+.
T Consensus        84 HPnv~~~~G~i~~c---L~~l~-----~W~p~~~---i~~vl~~i~~ll~~pn~--~~p~~~~~~~  136 (138)
T 1jat_B           84 LPCVNPTTGEVQTD---FHTLR-----DWKRAYT---METLLLDLRKEMATPAN--KKLRQPKEGE  136 (138)
T ss_dssp             CTTBCTTTCBBCTT---SHHHH-----TCCTTCC---HHHHHHHHHHHHTSHHH--HTSCCCCTTC
T ss_pred             cCCEeCCCCEEeee---cccCC-----CCCCcCc---HHHHHHHHHHHHcCCCC--CCCCCcchhh
Confidence            99999435999  8   55665     5899775   99999999999999865  6778876543

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=5.3e-35  Score=231.71  Aligned_cols=114  Identities=20%  Similarity=0.343  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc-ccc
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI-NMT  156 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI-~HP  156 (226)
                      +.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus         7 a~~RL~kEl~~l~~~~~~~-~~~~~~~~---~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP   82 (125)
T 2fo3_A            7 ANYRIQKELHNFLNNPPIN-CTLDVHPN---NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT   82 (125)
T ss_dssp             --CHHHHHHHHHHHSCCTT-EEEEECTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEeCcc---hhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence            5689999999999999888 88877544   799999999999999999999999999999999999999999997 999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      ||+ .+|+||++   +|+    +.|+|+++   |++||++|++||.+++.
T Consensus        83 nv~-~~G~iCl~---iL~----~~W~P~~~---i~~vl~si~~ll~~p~~  121 (125)
T 2fo3_A           83 HVY-SNGDICLS---LLG----DDYNPSLS---ISGLVLSIISMLSSAKE  121 (125)
T ss_dssp             TBC-TTSBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHC----
T ss_pred             cCC-CCCEEEch---hcC----CCCCCCCc---HHHHHHHHHHHHhCccc
Confidence            999 89999955   665    47999876   99999999999999944

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.5e-34  Score=232.34  Aligned_cols=114  Identities=20%  Similarity=0.338  Sum_probs=104.2

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc-cc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI-NM  155 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI-~H  155 (226)
                      .+.+||++|+++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~-~~~~~~~~---nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   95 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPIN-CTIDVHPS---NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKH   95 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTT-EEEEECTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCC-eEEEeccc---cccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCC
Confidence            47899999999999999888 88877544   799999999999999999999999999999999999999999997 99


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQV  205 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~  205 (226)
                      |||+ .+|+||++   +|+    +.|+|+++   |++||++|++||.++.
T Consensus        96 Pnv~-~~G~ICl~---iL~----~~WsP~~t---i~~vL~si~sll~~p~  134 (136)
T 2h2y_A           96 THVY-SNGDICLS---VLG----DDYNPSLS---ISGLILSIISMLSSAK  134 (136)
T ss_dssp             TTBC-TTCCBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHSSSC
T ss_pred             CcCC-CCCEEECc---ccc----CCCCCCCc---HHHHHHHHHHHHhCcC
Confidence            9999 89999954   665    47999876   9999999999999984

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=8.3e-35  Score=242.22  Aligned_cols=123  Identities=58%  Similarity=1.014  Sum_probs=108.4

Q ss_pred             CCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        74 ~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      +.++|.+||++||++|++++++|.+++.+.++++.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        32 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i  111 (170)
T 2hlw_A           32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI  111 (170)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence            45789999999999999998888778877555433599999999999999999999999999999999999999999999


Q ss_pred             ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                      |||||+..+|+||+++|..+     +.|+|+++   |++||++|++||.++
T Consensus       112 ~HPNV~~~~G~ICl~iL~~~-----~~WsP~~t---i~~vL~sI~~ll~~~  154 (170)
T 2hlw_A          112 NMNGVNSSNGVVDPRAISVL-----AKWQNSYS---IKVVLQELRRLMMSK  154 (170)
T ss_dssp             CCSSBCSSSCBBCTTTCHHH-----HTCCSSCC---HHHHHHHHHHHHHST
T ss_pred             ccCCEeCCCCEEEhhhcCCC-----CCCCccCc---HHHHHHHHHHHHccC
Confidence            99999867999996644443     36999875   999999999999874

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=4.2e-35  Score=240.21  Aligned_cols=129  Identities=21%  Similarity=0.320  Sum_probs=113.1

Q ss_pred             cCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032         73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus        73 ~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      .+...+.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         5 ~~~~~~~~RL~kEl~~l~~~~~~~-i~~~p~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (156)
T 2e2c_A            5 KERHSVSKRLQQELRTLLMSGDPG-ITAFPDGD---NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccchHHHHHHHHHHHHHHhCCCCC-EEEEECCC---CccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence            334468899999999999988888 88877654   79999999999999999999999999999999999999999999


Q ss_pred             cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccC
Q psy15032        153 INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSG  218 (226)
Q Consensus       153 I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~  218 (226)
                      +|||||+ .+|+||++   +|.    +.|+|+++   |.+||++|++||.+++.  ++|+++..+.
T Consensus        81 i~HPnv~-~~G~iCl~---iL~----~~W~p~~~---i~~vL~si~~ll~~pn~--~~p~n~~aa~  133 (156)
T 2e2c_A           81 CWHPNVD-QSGNICLD---ILK----ENWTASYD---VRTILLSLQSLLGEPNN--ASPLNAQAAD  133 (156)
T ss_dssp             CCBTTBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHTTSCCC--SSCSCHHHHH
T ss_pred             cccCCCc-cCceEECc---ccc----ccCCCCCc---HHHHHHHHHHHHhCCCC--CCHHHHHHHH
Confidence            9999999 79999954   665    47999875   99999999999999854  6777765543

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-34  Score=238.93  Aligned_cols=130  Identities=24%  Similarity=0.339  Sum_probs=113.4

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCC--CCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLEND--DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~--d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      +.+.+||++|+++|++++++| +++.+.++  ++.|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+|
T Consensus         9 ~~~~~RL~kEl~~l~~~~p~g-i~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            9 SLCKTRLQEERKQWRRDHPFG-FYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTT-CEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-EEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            468899999999999999999 67777643  233799999999999999999999999999999999999999999999


Q ss_pred             ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |||||+ .+|+||++   +|..  .+.|+|+++   |++||++|++||.+++.  ++|+++..+
T Consensus        88 ~HPnV~-~~G~iCl~---iL~~--~~~W~p~~t---i~~vL~~i~~ll~~P~~--~~p~n~~aa  140 (163)
T 3rcz_B           88 FHPNVY-PSGTVCLS---ILNE--EEGWKPAIT---IKQILLGIQDLLDDPNI--ASPAQTEAY  140 (163)
T ss_dssp             CSTTBC-TTSBBCCG---GGCT--TTTCCTTCC---HHHHHHHHHHHHTSCCT--TSCSCHHHH
T ss_pred             ccCCCC-CCCcEecc---ccCC--CCCcCCcCc---HHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            999999 89999955   6663  346999875   99999999999999854  677776544

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.2e-34  Score=236.25  Aligned_cols=124  Identities=23%  Similarity=0.438  Sum_probs=110.8

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~a~~RL~kEl~~l~~~~~~~-i~~~p~~~---nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   79 (151)
T 4gpr_A            4 MAMRRIQKELREIQQDPPCN-CSAGPVGD---DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHP   79 (151)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEESSS---CTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEEcCC---CceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccc
Confidence            47899999999999999888 88888664   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||++   +|.    +.|+|+++   |++||++|++||.+++.  ++|+++..+
T Consensus        80 nv~-~~G~iCl~---iL~----~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  127 (151)
T 4gpr_A           80 NIN-KNGVICLD---ILK----DQWSPALT---LSRVLLSISSLLTDPNP--SDPLDPEVA  127 (151)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHCCCT--TSCSSHHHH
T ss_pred             eEC-CCCEEEcc---ccc----CCCCCCCc---HHHHHHHHHHHhcCCCC--CCchhHHHH
Confidence            999 89999954   665    47999876   99999999999999854  567665443

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-34  Score=239.68  Aligned_cols=123  Identities=25%  Similarity=0.463  Sum_probs=110.2

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        21 ~~~~RL~kEl~~l~~~~~~g-i~~~~~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP   96 (166)
T 2ayv_A           21 GALKRINKELNDLSKDPPTN-CSAGPVGD---DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHP   96 (166)
T ss_dssp             THHHHHHHHHHHHHHSCCTT-EEEEECSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEEcCC---CcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCC
Confidence            47899999999999998888 88887654   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      ||+ .+|+||++   +|.    +.|+|+++   |.+||++|++||.+++.  ++|+++..
T Consensus        97 NI~-~~G~ICL~---iL~----~~WsP~~t---i~~vL~sI~sll~~pn~--~~Pln~~a  143 (166)
T 2ayv_A           97 NIN-SQGAICLD---ILK----DQWSPALT---ISKVLLSISSLLTDPNP--DDPLVPEI  143 (166)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             cCC-CCCeEEcc---ccc----ccCCCCCc---HHHHHHHHHHHHhCCCC--CchhhHHH
Confidence            999 89999954   666    47999875   99999999999999853  66666544

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.7e-34  Score=235.02  Aligned_cols=122  Identities=25%  Similarity=0.398  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         3 ~~RL~kEl~~l~~~~~~~-i~~~~~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   78 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPG-IMAVPVPE---NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI   78 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHhCCCCC-EEEEECCC---cccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCC
Confidence            489999999999998888 88887654   79999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      + .+|+||++   +|.    +.|+|+++   |.+||.+|++||.+++.  +.|+++..+
T Consensus        79 ~-~~G~iCl~---iL~----~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  124 (149)
T 2r0j_A           79 D-KLGRICLD---ILK----DKWSPALQ---IRTVLLSIQALLSSPEP--DDPLDSKVA  124 (149)
T ss_dssp             C-TTCBBCCG---GGT----TTCCTTSC---HHHHHHHHHHHHHSCCT--TSCSSCHHH
T ss_pred             C-CCCEEech---hcC----CCCCCCCc---HHHHHHHHHHHHhCCCC--CCchhHHHH
Confidence            9 89999954   665    47999876   99999999999999854  567666443

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-34  Score=237.44  Aligned_cols=123  Identities=19%  Similarity=0.324  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         6 ~~~RL~kEl~~l~~~~~~~-i~~~~~~~---~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (154)
T 2c2v_B            6 LPRRIIKETQRLLAEPVPG-IKAEPDES---NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN   81 (154)
T ss_dssp             CCHHHHHHHHHHHHSCCTT-EEEEECSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEECCC---chheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence            4699999999999998888 88887655   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |+ .+|+||+   ++|.    +.|+|+++   |.+||++|++||.+++.  ++|+++..+
T Consensus        82 v~-~~G~iCl---~iL~----~~W~p~~~---i~~vl~~i~~ll~~pn~--~~p~n~~aa  128 (154)
T 2c2v_B           82 VD-KLGRICL---DILK----DKWSPALQ---IRTVLLSIQALLSAPNP--DDPLANDVA  128 (154)
T ss_dssp             BC-TTCBBCC---HHHH----TSCCTTCC---HHHHHHHHHHHTTSCCC--CCC--CHHH
T ss_pred             Cc-cCCeEEc---hhcc----CCCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            99 8999995   4665    47999776   99999999999999854  567666443

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.5e-34  Score=236.74  Aligned_cols=123  Identities=24%  Similarity=0.392  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|++++++| +++.+.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         6 ~~~RL~kE~~~l~~~~~~~-i~~~~~~~---~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (155)
T 1jat_A            6 LPKRIIKETEKLVSDPVPG-ITAEPHDD---NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN   81 (155)
T ss_dssp             CCHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEECCC---chhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCC
Confidence            5699999999999998888 88887654   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |+ .+|+||++   +|.    +.|+|+++   |.+||.+|++||.+++.  +.|.++..+
T Consensus        82 v~-~~G~iCl~---iL~----~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  128 (155)
T 1jat_A           82 ID-RLGRICLD---VLK----TNWSPALQ---IRTVLLSIQALLASPNP--NDPLANDVA  128 (155)
T ss_dssp             BC-TTCCBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSTTCCTTH
T ss_pred             CC-CCCEEEch---hhc----cCCCCCCC---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            99 99999954   665    47999876   99999999999999853  667776544

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=8.2e-35  Score=236.70  Aligned_cols=125  Identities=19%  Similarity=0.422  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|++++++| +++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 ~~~RL~~El~~l~~~~~~~-i~~~~~~~~--~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAH-ITLEFVSES--DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGC-CEEEESSSS--CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhCCCCC-EEEEECCCC--CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence            5799999999999998888 888887653  6999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |+..+|+||+   ++|.    +.|+|+++   |.+||++|++||.+++.  +.|+++..+
T Consensus        79 i~~~~G~iCl---~iL~----~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  126 (149)
T 1fxt_A           79 ISSVTGAICL---DILK----NAWSPVIT---LKSALISLQALLQSPEP--NDPQDAEVA  126 (149)
T ss_dssp             BCSSSCCBCC---HHHH----TSCCTTCC---HHHHHHHHHHHHHSCCS--SSCSSHHHH
T ss_pred             CcCCCCeEeC---CcCC----CCCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            9933999995   5676    47999875   99999999999999854  567665543

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.7e-34  Score=239.97  Aligned_cols=123  Identities=22%  Similarity=0.434  Sum_probs=109.5

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++||++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||
T Consensus         4 ~a~~RL~kEl~~l~~~~~~g-i~~~p~~~---nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP   79 (169)
T 1ayz_A            4 PARRRLMRDFKRMKEDAPPG-VSASPLPD---NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP   79 (169)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEecCC---ccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence            46899999999999999888 78877654   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      ||+ .+|+||+   ++|.    +.|+|+++   |.+||++|++||.+++.  +.|+++..
T Consensus        80 NI~-~~G~ICl---~iL~----~~WsP~~~---i~~vL~si~~ll~~Pn~--~~P~n~~a  126 (169)
T 1ayz_A           80 NVY-ANGEICL---DILQ----NRWTPTYD---VASILTSIQSLFNDPNP--ASPANVEA  126 (169)
T ss_dssp             TBC-TTSBBCC---GGGT----TTCCTTCC---HHHHHHHHHHHHTCCCC--SSCSSHHH
T ss_pred             CCC-CCCeEee---hhhc----cCCCCcCc---HHHHHHHHHHHHhCCCC--CcHHHHHH
Confidence            999 7999995   5676    47999876   99999999999999853  55665543

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.9e-34  Score=242.19  Aligned_cols=129  Identities=23%  Similarity=0.339  Sum_probs=110.7

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.|||++||++|++++++| +++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         7 ~a~kRL~kEl~~l~~~~~~g-i~~~~~~~~--nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   83 (183)
T 3rz3_A            7 SSQKALLLELKGLQEEPVEG-FRVTLVDEG--DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP   83 (183)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEECTTC--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEecCcc--chhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence            47899999999999999998 888755443  799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhccccc---------CCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAK---------ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~---------~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||+   ++|..|.         .+.|+|+++   |++||++|++||.+|+.  +.|++...+
T Consensus        84 nV~-~~G~iCl---siL~~~~~~~~~~~~~~~~W~p~~~---i~~vL~si~~ll~~Pn~--~~p~n~~aa  144 (183)
T 3rz3_A           84 NIY-ETGDVCI---SILHPPVDDPQSGELPSERWNPTQN---VRTILLSVISLLNEPNT--FSPANVDAS  144 (183)
T ss_dssp             TBC-TTSBBCC---TTC--------------CCCCTTCC---HHHHHHHHHHHHHSCCC--SSCSSHHHH
T ss_pred             CCC-CCCcEeh---hhcCcccccccccccccCCCCCcCc---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            999 7999995   5676432         368999876   99999999999999854  567766544

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=2e-34  Score=234.70  Aligned_cols=122  Identities=30%  Similarity=0.534  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         5 ~~~RL~kEl~~l~~~~~~~-~~~~~~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (150)
T 1z2u_A            5 ALKRIQKELQDLGRDPPAQ-CSAGPVGD---DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   80 (150)
T ss_dssp             HHHHHHHHHHHHHHSCCSS-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEECCC---cceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence            6799999999999998888 88887664   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      |+ .+|+||++   +|.    +.|+|+++   |.+||++|++||.+++.  +.|+++..
T Consensus        81 v~-~~G~iCl~---iL~----~~W~p~~~---i~~vl~~i~~ll~~pn~--~~p~n~~a  126 (150)
T 1z2u_A           81 IN-SNGSICLD---ILR----SQWSPALT---ISKVLLSICSLLCDPNP--DDPLVPEI  126 (150)
T ss_dssp             BC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             CC-CCCeEeec---ccc----CCCCCCCC---HHHHHHHHHHHhhCCCC--CCccCHHH
Confidence            99 89999954   665    47999875   99999999999999854  56666543

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=3.4e-34  Score=235.17  Aligned_cols=129  Identities=21%  Similarity=0.281  Sum_probs=111.7

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCC--CCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLEND--DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~--d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      .+.+||++|+++|++++++| +.+.+.++  ++.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         4 ~a~~RL~kE~~~l~~~~~~g-~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   82 (157)
T 2gjd_A            4 LCLQRLQEERKKWRKDHPFG-FYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY   82 (157)
T ss_dssp             HHHHHHHHHHHHHHHCCCTT-CEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence            36799999999999999998 77766542  2237999999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||||+ .+|+||+   ++|+.  .+.|+|+++   |++||++|++||.+++  .++|+++..+
T Consensus        83 HPnv~-~~G~iCl---~iL~~--~~~W~p~~~---i~~vl~~i~~ll~~p~--~~~p~n~~aa  134 (157)
T 2gjd_A           83 HPNVY-PSGTICL---SILNE--DQDWRPAIT---LKQIVLGVQDLLDSPN--PNSPAQEPAW  134 (157)
T ss_dssp             CTTBC-TTSBBCC---GGGCT--TTTCCTTCC---HHHHHHHHHHHHTSCC--TTCCCCHHHH
T ss_pred             cCCCC-CCCcEee---ecccC--CCCCCCCCc---HHHHHHHHHHHHhCCC--CCCccCHHHH
Confidence            99999 8999994   57764  247999875   9999999999999884  4677776543

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=2.8e-34  Score=237.72  Aligned_cols=123  Identities=28%  Similarity=0.495  Sum_probs=110.0

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|++++++| +++.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        19 ~~~~RL~kEl~~l~~~~~~g-i~~~p~~~---nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HP   94 (165)
T 2c4o_A           19 MALKRIHKELNDLARDPPAQ-CSAGPVGD---DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   94 (165)
T ss_dssp             HHHHHHHHHHHHHHSSCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEEcCC---CcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCC
Confidence            47899999999999998888 88887654   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      ||+ .+|+||++   +|.    +.|+|+++   |.+||.+|++||.+++.  +.|+++..
T Consensus        95 nV~-~~G~ICl~---iL~----~~W~P~~t---i~~vL~si~~ll~~pn~--~~P~n~~a  141 (165)
T 2c4o_A           95 NIN-SNGSICLD---ILR----SQWSPALT---ISKVLLSICSLLCDPNP--DDPLVPEI  141 (165)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSHHH
T ss_pred             cCC-CCCeEeeh---hhc----CCCCCcCc---HHHHHHHHHHHHhCCCC--CccccHHH
Confidence            999 89999954   666    47999875   99999999999999853  56666543

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.3e-34  Score=236.43  Aligned_cols=124  Identities=20%  Similarity=0.303  Sum_probs=109.9

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ..+.+||++|+++|++++++| +.+.+.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus        12 ~~~~~RL~kEl~~l~~~~~~g-i~~~~~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   87 (158)
T 1zdn_A           12 PHIIRLVYKEVTTLTADPPDG-IKVFPNEE---DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTT-EEEEECSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-EEEEECCC---ChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence            347899999999999999888 88887544   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      |||+ .+|+||   |++|.    +.|+|+++   |.+||.+|++||.+++.  +.|+++..
T Consensus        88 Pnv~-~~G~iC---l~iL~----~~W~p~~~---i~~vL~~i~~ll~~pn~--~~p~n~~a  135 (158)
T 1zdn_A           88 PNVG-ANGEIC---VNVLK----RDWTAELG---IRHVLLTIKCLLIHPNP--ESALNEEA  135 (158)
T ss_dssp             TTBC-TTSBBC---HHHHT----TTCCTTCC---HHHHHHHHHHHHHSCCG--GGCSSHHH
T ss_pred             CCCC-CCCEEe---hhhcC----CCCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHHH
Confidence            9999 889999   55676    47999875   99999999999999855  55666543

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.6e-34  Score=248.77  Aligned_cols=133  Identities=24%  Similarity=0.387  Sum_probs=112.9

Q ss_pred             ccccccCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCee
Q psy15032         68 CYLKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQC  147 (226)
Q Consensus        68 ~~~~s~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V  147 (226)
                      ..+.......+.+||++||++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|
T Consensus        14 ~~~~~~~~s~a~~RL~kEl~~l~~~~~~g-i~~~p~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V   89 (216)
T 2pwq_A           14 RENLYFQGSKELLRLQKELKDIENENVQE-IDAHIKDS---NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKI   89 (216)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHHSCTTT-EEEEECSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEE
T ss_pred             hhccccccCHHHHHHHHHHHHHHhCCCCC-EEEEEcCC---ccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcc
Confidence            33334444568899999999999999888 88888765   799999999999999999999999999999999999999


Q ss_pred             eeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        148 RFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       148 ~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      +|.|+||||||+..+|+||+   ++|.+    .|+|+++   |.+||++|++||.+|+.  ++|+++..
T Consensus        90 ~F~T~i~HPNI~~~~G~ICL---~iL~~----~WsP~~t---i~~VL~sI~sLL~~Pnp--~dPln~ea  146 (216)
T 2pwq_A           90 KFVTKIWHPNISSQTGAICL---DVLKN----EWSPALT---IRTALLSIQALLSDPQP--DDPQDAEV  146 (216)
T ss_dssp             EESSCCCBTTBCTTTCBBCC---HHHHH----HCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             cccCCCcCCCCcCCCCEEEc---hhhcc----cCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHHH
Confidence            99999999999956899994   56764    6999875   99999999999999854  56666543

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=2.8e-34  Score=234.27  Aligned_cols=123  Identities=22%  Similarity=0.440  Sum_probs=109.5

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~a~~RL~~E~~~l~~~~~~~-i~~~~~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (152)
T 2aak_A            4 PARKRLMRDFKRLQQDPPAG-ISGAPQDN---NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP   79 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEeCCC---CccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccC
Confidence            47899999999999999888 78777654   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      ||+ .+|+||+   ++|.    +.|+|+++   |.+||.+|++||.+++.  +.|+++..
T Consensus        80 nv~-~~G~iCl---~iL~----~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~a  126 (152)
T 2aak_A           80 NIY-ADGSICL---DILQ----NQWSPIYD---VAAILTSIQSLLCDPNP--NSPANSEA  126 (152)
T ss_dssp             TBC-TTSBBCC---GGGT----TSCCTTCC---HHHHHHHHHHHHTSCCT--TSCSSHHH
T ss_pred             CCC-CCCEEec---hhhc----CCCCCCCc---HHHHHHHHHHHHhCCCC--CccccHHH
Confidence            999 7999995   4665    47999876   99999999999999843  56666543

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=2.9e-34  Score=236.48  Aligned_cols=129  Identities=22%  Similarity=0.330  Sum_probs=111.4

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecC--CCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLEN--DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~--~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      .+.+||++|+++|++++++| +.+.+..  +++.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         7 ~a~~RL~kE~~~l~~~~~~g-~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   85 (161)
T 2grr_A            7 IALSRLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   85 (161)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-CEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcc
Confidence            46899999999999999988 6666653  22238999999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||||+ .+|+||+   ++|..  .+.|+|+++   |.+||.+|++||.+++.  ++|+++..+
T Consensus        86 HPnv~-~~G~iCl---~iL~~--~~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  137 (161)
T 2grr_A           86 HPNVY-PSGTVCL---SILEE--DKDWRPAIT---IKQILLGIQELLNEPNI--QSPAQAEAY  137 (161)
T ss_dssp             STTBC-TTSBBCC---GGGCT--TTTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHHH
T ss_pred             cCCCC-CCCeEee---hhcCC--CCCcCCCCc---HHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            99999 8999995   56663  357999875   99999999999999854  677776543

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.1e-34  Score=239.44  Aligned_cols=128  Identities=13%  Similarity=0.225  Sum_probs=111.3

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ..+.+||++|+++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        22 ~~a~~RL~kEl~~l~~~~~~g-i~~~p~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   97 (169)
T 1yrv_A           22 GRAYLLLHRDFCDLKENNYKG-ITAKPVSE---DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   97 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTT-EEEEECST---TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCC-EEEEEcCC---ccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence            357899999999999998888 78877655   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |||+..+|+||+   ++|..  .+.|+|+++   |++||++|++||.+++  .+.|+++..+
T Consensus        98 PNI~~~~G~ICL---~iL~~--~~~WsP~~t---i~~vL~sI~sll~~Pn--~~~Pln~eaa  149 (169)
T 1yrv_A           98 PNVDPHTGQPCI---DFLDN--PEKWNTNYT---LSSILLALQVMLSNPV--LENPVNLEAA  149 (169)
T ss_dssp             TTBCTTTCCBCC---HHHHC--GGGCCTTCC---HHHHHHHHHHHHTSCC--TTSCSCHHHH
T ss_pred             CcccCCCCeEee---hhhcC--CcCCCCcCC---HHHHHHHHHHHHhCCC--CCCchhHHHH
Confidence            999339999995   56652  247999876   9999999999999985  3667766543

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.9e-34  Score=239.36  Aligned_cols=126  Identities=25%  Similarity=0.342  Sum_probs=111.1

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ..+.+||++||++|++++++| +++.+.++   |+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus        29 ~~~~~RL~kEl~~l~~~~~~g-i~~~p~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  104 (179)
T 1i7k_A           29 GPVGKRLQQELMTLMMSGDKG-ISAFPESD---NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH  104 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTT-EEEEEETT---EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHhCCCCC-EEEEEcCC---cccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence            457899999999999998888 88877654   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccC
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSG  218 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~  218 (226)
                      |||+ .+|+||++   +|.    +.|+|+++   |.+||++|++||.+++.  +.|+++..+.
T Consensus       105 PNV~-~~G~ICL~---iL~----~~WsP~~t---i~~vL~sI~sll~~Pn~--~~Pln~~aa~  154 (179)
T 1i7k_A          105 PNVD-TQGNISLD---ILK----EKWSALYD---VRTILLSIQSLLGEPNI--DSPLNTHAAE  154 (179)
T ss_dssp             TTBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHHHH
T ss_pred             Cccc-cCCeEEcc---cCc----CcCCCCCC---HHHHHHHHHHHHhCCCC--cchhhHHHHH
Confidence            9999 79999955   665    47999876   99999999999999854  6677665443

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=6.6e-34  Score=235.32  Aligned_cols=131  Identities=15%  Similarity=0.203  Sum_probs=112.1

Q ss_pred             CCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         74 SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        74 ~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      ....+.+||++||++|++++++| +++.+.+++  |++.|.++| ||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        11 ~~s~~~~RL~kEl~~l~~~~~~g-i~~~~~~~~--~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   86 (167)
T 3fn1_B           11 RVSVRDKLLVKEVAELEANLPCT-CKVHFPDPN--KLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI   86 (167)
T ss_dssp             CCCHHHHHHHHHHHHHGGGSCTT-EEEECSSSS--CTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC
T ss_pred             chhHHHHHHHHHHHHHHhCCCCC-EEEEeCCCC--cceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc
Confidence            44569999999999999999988 888766544  799999998 89999999999999999999999999999999999


Q ss_pred             ccceeeCCCCeEEccchhhcccc--cCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEA--KATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w--~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      |||||+ .+|+||   |++|..|  .++.|+|+++   |.+||++|++||.++.+ .+.|.++..
T Consensus        87 ~HPnv~-~~G~iC---l~iL~~~~~~~~~W~p~~~---i~~vl~~i~~ll~~~pn-~~~p~n~ea  143 (167)
T 3fn1_B           87 WHPNIT-ETGEIC---LSLLREHSIDGTGWAPTRT---LKDVVWGLNSLFTDLLN-FDDPLNIEA  143 (167)
T ss_dssp             CCSSBC-TTCCBC---CGGGSBCSSSTTSBCTTCC---HHHHHHHHHHTTTTTCC-SSSCSCHHH
T ss_pred             ccCCCC-CCCEEe---chhhccCCCCCCCCCCcCc---HHHHHHHHHHHHcCCCC-CCcchhHHH
Confidence            999999 899999   5577764  3457999876   99999999999999422 355665543

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1e-33  Score=232.62  Aligned_cols=125  Identities=25%  Similarity=0.441  Sum_probs=109.1

Q ss_pred             cHHHHHHHHHHHhHcC---CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         77 PRNFRLLEELEHGQRG---VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~---~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      .+.+||++|+++|+++   ++.| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         8 ~a~~RL~kEl~~l~~~~~~~~~~-i~~~~~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   83 (159)
T 2bep_A            8 IAVQRIKREFKEVLKSEETSKNQ-IKVDLVDE---NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTS-EEEEECSS---SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCC-EEEEeCCC---chheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCC
Confidence            4789999999999985   3556 88888665   699999999999999999999999999999999999999999999


Q ss_pred             ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |||||+..+|+||+   ++|.    +.|+|+++   |.+||++|++||.+++.  +.|+++..+
T Consensus        84 ~HPni~~~~G~iCl---~iL~----~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  135 (159)
T 2bep_A           84 WHPNISSVTGAICL---DILK----DQWAAAMT---LRTVLLSLQALLAAAEP--DDPQDAVVA  135 (159)
T ss_dssp             CBTTBCTTTCBBCC---GGGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHHH
T ss_pred             CccCCCCCCCEEeC---hhhh----ccCCCCCc---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            99999955999995   4666    47999875   99999999999999853  667766543

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=8.5e-34  Score=240.48  Aligned_cols=125  Identities=26%  Similarity=0.472  Sum_probs=108.0

Q ss_pred             cHHHHHHHHHHHhHcCCC-------------CCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCC
Q psy15032         77 PRNFRLLEELEHGQRGVG-------------DGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDE  143 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~-------------~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~  143 (226)
                      .+.+||++||++|+++++             .| +.+.+.++   |+++|+++|.||++|||+||.|+|+|.||++||++
T Consensus        32 ~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~g-i~v~~~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~  107 (193)
T 2f4z_A           32 REQARLLKELADIQQLQRAHDSEPAATHSTSHG-VSAQIVGG---DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYN  107 (193)
T ss_dssp             CHHHHHHHHHHHHHHC----------------C-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred             HHHHHHHHHHHHHHhCCCccccccccccCCCCc-EEEEEcCC---CcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCC
Confidence            478999999999999876             45 88887765   79999999999999999999999999999999999


Q ss_pred             CCeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        144 PPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       144 PP~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+|+|.|+||||||+..+|+||+   ++|.    +.|+|+++   |++||++|++||.+++.  ++|+++..+
T Consensus       108 PP~V~F~T~i~HPNI~~~~G~ICL---~iL~----~~WsP~~t---i~~vL~sI~sll~~pnp--~~P~n~~aa  169 (193)
T 2f4z_A          108 PPKMKFVTKIWHPNISSQTGAICL---DILK----HEWSPALT---IRTALLSIQAMLADPVP--TDPQDAEVA  169 (193)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCC---GGGT----TTCCTTSC---HHHHHHHHHHHHHSCCT--TSCSCHHHH
T ss_pred             CCeEEEecCCccCCCcCCCCEEEC---cccc----ccCCCCCC---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            999999999999999966999995   4676    37999876   99999999999999854  667665443

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-33  Score=225.47  Aligned_cols=108  Identities=22%  Similarity=0.382  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEE--ecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc--c
Q psy15032         80 FRLLEELEHGQRGVGDGTISWG--LENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN--M  155 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~--~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~--H  155 (226)
                      +||++|+++|++++++| +++.  +.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|  |
T Consensus        25 ~RL~kEl~~l~~~~~~g-i~v~~~~~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~H  100 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPG-MTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVH  100 (136)
T ss_dssp             HHHHHHHHHHHHSCCTT-CCCCTTCCCC---SCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCB
T ss_pred             HHHHHHHHHHHhCCCCC-EEEEEeeCcc---ccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCC
Confidence            99999999999999888 6643  3333   7999999999999999999999999999999999999999999999  9


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIR  202 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~  202 (226)
                      |||+ .+|+||++   +|+    +.|+|+++   |++||++|++||.
T Consensus       101 PNV~-~~G~ICL~---iL~----~~WsP~~t---i~~vL~sI~slL~  136 (136)
T 2a7l_A          101 PHVY-SNGHICLS---ILT----EDWSPALS---VQSVCLSIISMLS  136 (136)
T ss_dssp             TTBC-TTCBBCCG---GGT----TTCCTTSC---HHHHHHHHHHHTC
T ss_pred             ccCC-CCCeEEch---hcC----CCCCCCCc---HHHHHHHHHHHhC
Confidence            9999 89999955   665    47999886   9999999999984

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=2.7e-33  Score=237.57  Aligned_cols=123  Identities=26%  Similarity=0.477  Sum_probs=109.8

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++||++|++++++| +.+.+.++   |+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+||||
T Consensus        48 ~a~~RL~kEl~~l~~~~~~g-i~~~p~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  123 (194)
T 3bzh_A           48 TSAKRIQKELADITLDPPPN-CSAGPKGD---NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHC  123 (194)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-ceeecccC---ccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccc
Confidence            47899999999999998888 88887654   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      ||+ .+|+|||+   +|.    +.|+|+++   |.+||++|++||.+++.  +.|+++..
T Consensus       124 NV~-~~G~ICL~---iL~----~~WsP~~t---i~~vL~sI~~ll~~pnp--~~Pln~~a  170 (194)
T 3bzh_A          124 NIN-SQGVICLD---ILK----DNWSPALT---ISKVLLSICSLLTDCNP--ADPLVGSI  170 (194)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             eEC-CCCceech---hhh----ccCCCcCc---HHHHHHHHHHHHhCCCC--ccchhHHH
Confidence            999 89999955   665    47999875   99999999999999853  56666544

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=2.5e-33  Score=229.32  Aligned_cols=123  Identities=21%  Similarity=0.407  Sum_probs=107.1

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEE-EecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISW-GLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~-~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      .+.+||++|+++|++++++| +.+ .+.++   |+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~-i~~~~~~~~---~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPY-LRNLSSDDA---NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH   78 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTT-EEEEEECSS---CTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHhCCCCC-EEEEecCCC---chheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCcc
Confidence            36799999999999999888 777 54443   7999999999 999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      |||+ .+|+||+   ++|+   .+.|+|+++   |.+||.+|++||.+++.  +.|+++..
T Consensus        79 PnV~-~~G~iCl---~iL~---~~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~a  127 (155)
T 1wzv_A           79 PNVD-ENGQICL---PIIS---SENWKPCTK---TCQVLEALNVLVNRPNI--REPLRMDL  127 (155)
T ss_dssp             TTBC-TTCBCCC---GGGC---TTTCCTTCC---HHHHHHHHHHHHHSCCS--SSCSSHHH
T ss_pred             CcCC-CCCeEee---cCCC---ccCCCCCCc---HHHHHHHHHHHHhCCCC--CchHHHHH
Confidence            9999 7999995   4663   358999876   99999999999999854  56666544

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=3.7e-33  Score=237.30  Aligned_cols=124  Identities=25%  Similarity=0.442  Sum_probs=108.5

Q ss_pred             cHHHHHHHHHHHhHcCC---CCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         77 PRNFRLLEELEHGQRGV---GDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~---~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      .+.+||++|+++|+++.   +.| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         5 ~a~~Rl~kEl~~l~~~~~~~~~~-i~~~~~~~---nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   80 (201)
T 3k9o_A            5 IAVQRIKREFKEVLKSEETSKNQ-IKVDLVDE---NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   80 (201)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHTTS-EEEEECST---TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC-EEEEECCC---CccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCc
Confidence            36799999999999873   456 88888765   799999999999999999999999999999999999999999999


Q ss_pred             ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      |||||+..+|+||++   +|.    +.|+|+++   |.+||++|++||.+++.  +.|.++..
T Consensus        81 ~HPnv~~~~G~iCl~---iL~----~~W~p~~~---i~~vL~~i~~ll~~p~p--~~p~n~~a  131 (201)
T 3k9o_A           81 WHPNISSVTGAICLD---ILK----DQWAAAMT---LRTVLLSLQALLAAAEP--DDPQDAVV  131 (201)
T ss_dssp             CBTTBCTTTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             ccCCCcCCCCeeeCc---ccc----cCCCCCCC---HHHHHHHHHHHhcCCCC--CCcccHHH
Confidence            999999559999954   665    47999876   99999999999999854  56666543

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.1e-32  Score=229.52  Aligned_cols=128  Identities=23%  Similarity=0.364  Sum_probs=107.3

Q ss_pred             cHHHHHHHHHHHhHc-C-C------CC-C-cEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCe
Q psy15032         77 PRNFRLLEELEHGQR-G-V------GD-G-TISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQ  146 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~-~-~------~~-g-~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~  146 (226)
                      .+.+||++||++|++ . +      +. | .+.+.+.+++  |+++|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~--nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~   83 (172)
T 2y9m_A            6 TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET--DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK   83 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTT--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred             HHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCC--chhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence            478999999999998 4 2      32 3 3555553333  79999999999999999999999999999999999999


Q ss_pred             eeeec-ccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        147 CRFVS-RINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       147 V~F~T-pI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |+|.| +||||||+..+|+||+   ++|.   .+.|+|+++   |.+||++|++||.+++.  +.|+++..+
T Consensus        84 v~f~t~~i~HPni~~~~G~iCl---~iL~---~~~W~p~~~---i~~vL~si~~ll~~p~~--~~p~n~~aa  144 (172)
T 2y9m_A           84 ISFMQNNILHCNVKSATGEICL---NILK---PEEWTPVWD---LLHCVHAVWRLLREPVC--DSPLDVDIG  144 (172)
T ss_dssp             EEECTTSCCCTTEETTTTEECC---GGGS---TTTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSHHHH
T ss_pred             EEEeeCCeecCCCcCCCCEEec---cccC---CCCCCCcCc---HHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            99999 9999999757999995   4665   357999875   99999999999999844  677766544

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=99.98  E-value=2.6e-33  Score=228.93  Aligned_cols=124  Identities=25%  Similarity=0.445  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|++++++| +.+...+++  |+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 a~~RL~kEl~~l~~~~~~~-~~~~~~~~~--~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKN-FRNIQVDEA--NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSS-CEEECSSCS--SSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEeeCCCC--chheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            5689999999999999888 554443333  7999999998 99999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |+ .+|+||++   +|.   .+.|+|+++   |.+||++|++||.+++.  +.|.++..+
T Consensus        79 v~-~~G~iCl~---iL~---~~~W~p~~~---i~~vl~~i~~ll~~p~~--~~p~n~~aa  126 (154)
T 1c4z_D           79 ID-EKGQVCLP---VIS---AENWKPATK---TDQVIQSLIALVNDPQP--EHPLRADLA  126 (154)
T ss_dssp             BC-TTCBBCCT---TTS---SSSCCTTCC---HHHHHHHHHHHHHSCCC--SSCSCHHHH
T ss_pred             CC-CCCEEECC---CCC---CCCCCCCCc---HHHHHHHHHHHHcCCCC--CchhhHHHH
Confidence            99 89999955   665   357999876   99999999999999854  566666543

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=1.3e-32  Score=226.68  Aligned_cols=122  Identities=14%  Similarity=0.280  Sum_probs=105.3

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|  ++++| +++.+.+++  |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         6 ~~~~RL~kEl~~l--~~~~~-~~~~~~~~~--~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (160)
T 1y8x_A            6 AAQLRIQKDINEL--NLPKT-CDISFSDPD--DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP   79 (160)
T ss_dssp             HHHHHHHHHHHTC--CCCTT-EEEECSSTT--CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             HHHHHHHHHHHhc--CCCCC-eEEEeccCC--ccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccC
Confidence            4789999999999  45667 787743333  799999988 99999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||+   ++|.    +.|+|+++   |.+||.+|++||.+|+.  +.|+++..+
T Consensus        80 nv~-~~G~iCl---~iL~----~~W~p~~~---i~~vL~~i~~ll~~Pn~--~~p~n~~aa  127 (160)
T 1y8x_A           80 NID-LEGNVCL---NILR----EDWKPVLT---INSIIYGLQYLFLEPNP--EDPLNKEAA  127 (160)
T ss_dssp             TBC-TTCBBCC---GGGT----TTCCTTCC---HHHHHHHHHHHHHSCCC--SSCSCHHHH
T ss_pred             cCC-CCCeEEc---ccch----hhccCCCC---HHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            999 8999995   4665    47999875   99999999999999854  677776544

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=99.98  E-value=3.1e-33  Score=240.64  Aligned_cols=123  Identities=20%  Similarity=0.424  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.+||++|+++|++++++| +++.+.+++  +++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 a~~RL~kEl~~l~~~~~~g-i~~~p~~~~--~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   79 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAH-ITLEFVSES--DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   79 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTT-CEECCCSSS--SCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSS
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEECCCc--cccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCc
Confidence            6799999999999998888 888876653  5779999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |+..+|+||++   +|.    +.|+|+++   |.+||++|++||.+|+.  +.|.++.
T Consensus        80 I~~~~G~ICL~---iL~----~~WsP~~t---i~~VL~sI~sLL~~Pnp--~~Pln~e  125 (215)
T 1tte_A           80 ISSVTGAICLD---ILR----NAWSPVIT---LKSALISLQALLQSPEP--NDPQDAE  125 (215)
T ss_dssp             SCSSSSCCCSS---TTT----CCSCTTCC---HHHHHHHHHHHHTSCCC--SSCSCHH
T ss_pred             CcCCCCEEECc---cCC----CCCCCcCc---HHHHHHHHHHHHhCCCC--CCccCHH
Confidence            99339999955   665    47999875   99999999999999854  4566554

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=2.4e-32  Score=229.12  Aligned_cols=123  Identities=14%  Similarity=0.278  Sum_probs=105.9

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ..+.+||++||++|  ++++| +++.+..++  |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        25 ~~~~~RL~kEl~~l--~~~~~-i~~~~p~~~--nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~H   98 (180)
T 2nvu_C           25 SAAQLRIQKDINEL--NLPKT-CDISFSDPD--DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   98 (180)
T ss_dssp             CHHHHHHHHHHHTC--CCCTT-EEEECSSTT--CTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHhc--CCCCC-eEEEecccc--cccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCcc
Confidence            35789999999999  45667 887743333  799999998 9999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      |||+ .+|+||++   +|.    +.|+|+++   |.+||.+|++||.+|+.  +.|+++..+
T Consensus        99 PNV~-~~G~iCl~---iL~----~~W~p~~~---i~~vL~si~~ll~~Pn~--~~p~n~~aa  147 (180)
T 2nvu_C           99 PNID-LEGNVALN---ILR----EDWKPVLT---INSIIYGLQYLFLEPNP--EDPLNKEAA  147 (180)
T ss_dssp             TTBC-TTSBBCCG---GGT----TSCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSHHHH
T ss_pred             CCCC-CCCcEEcc---ccc----ccCCCCCC---HHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            9999 89999954   665    47999876   99999999999999854  667776543

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=99.97  E-value=3.3e-32  Score=239.29  Aligned_cols=126  Identities=25%  Similarity=0.432  Sum_probs=109.6

Q ss_pred             CccHHHHHHHHHHHhHcC---CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeec
Q psy15032         75 VVPRNFRLLEELEHGQRG---VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVS  151 (226)
Q Consensus        75 ~~~r~rRL~kEL~~L~~~---~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~T  151 (226)
                      ...+.+||++||++|+++   ++.| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        55 s~~a~~RL~kEl~~l~~~~~~~~~g-i~v~p~~d---nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T  130 (253)
T 3e46_A           55 ANIAVQRIKREFKEVLKSEETSKNQ-IKVDLVDE---NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT  130 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHTTS-EEEEECST---TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCC-EEEEECCC---cccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecC
Confidence            345789999999999987   3456 88888765   7999999999999999999999999999999999999999999


Q ss_pred             ccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        152 RINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       152 pI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      +||||||+..+|+||++   +|.    +.|+|+++   |.+||++|++||.+++.  +.|.++..
T Consensus       131 ~i~HPNV~~~~G~ICL~---iL~----~~WsP~~t---i~~vL~sI~~ll~~pnp--~~Pln~ea  183 (253)
T 3e46_A          131 KIWHPNISSVTGAICLD---ILK----DQWAAAMT---LRTVLLSLQALLAAAEP--DDPQDAVV  183 (253)
T ss_dssp             CCCBTTBCTTTCBBCCG---GGT----TCCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHH
T ss_pred             CCccCCccCCCCeeecc---ccc----CCCCCCCC---HHHHHHHHHHHhcCCCC--CChhhHHH
Confidence            99999999569999954   665    47999876   99999999999999854  56666543

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=99.97  E-value=6.3e-32  Score=220.79  Aligned_cols=119  Identities=18%  Similarity=0.295  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .+||++|+++|++.   | +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         4 ~~Rl~kEl~~l~~~---~-~~v~~~~~---~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni   76 (152)
T 2onu_A            4 LTRKQCDFTKLIMA---G-YDLELNNG---STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNV   76 (152)
T ss_dssp             CCHHHHTHHHHHHH---T-CCEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHhcCcC---C-CEEEEccC---ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcC
Confidence            47999999999874   4 66666654   79999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHH-HHHHHhccccCCCCCCCCcc
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLI-VCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~-I~sLL~~~~~~~~~~~q~~~  216 (226)
                      +..+|+||   |++|++    .|+|+++   |.+||.+ |++||.+|+.  +.|+++..
T Consensus        77 ~~~~G~iC---l~il~~----~W~p~~~---i~~vl~~ii~~Ll~~Pn~--~~P~n~~a  123 (152)
T 2onu_A           77 DEASGSVC---LDVINQ----TWTPLYS---LVNVFEVFLPQLLTYPNP--SDPLNSDA  123 (152)
T ss_dssp             CTTTCBBC---HHHHHH----HCCTTCC---HHHHHHTHHHHHHHSCCC--SSCSSHHH
T ss_pred             cCcCCeEe---cccccc----cCCCCCC---HHHHHHHHHHHHHhCCCC--CCcccHHH
Confidence            95599999   557763    6999876   9999999 6899998854  56666543

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.97  E-value=6.6e-32  Score=224.80  Aligned_cols=122  Identities=20%  Similarity=0.314  Sum_probs=102.4

Q ss_pred             CccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        75 ~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      .+.+.+||++|+++|++++. + +   ..++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        10 ~~~~~~RL~~El~~l~~~~~-~-v---~~~~---~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~   81 (171)
T 1yf9_A           10 NLRSNRRREMDYMRLCNSTR-K-V---YPSD---TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRIL   81 (171)
T ss_dssp             ---CCHHHHHHHHHHHSSSS-C-E---EECS---STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             cccHHHHHHHHHHHHHhCCC-C-C---CCCC---CceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcc
Confidence            34567999999999999863 3 3   2232   7999999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHH-HHHHhccccCCCCCCCCcc
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIV-CVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I-~sLL~~~~~~~~~~~q~~~  216 (226)
                      ||||+..+|+||   |++|.+    .|+|+++   |++||++| ++||.+++.  ++|+++..
T Consensus        82 HPNi~~~~G~iC---l~iL~~----~W~p~~~---i~~vL~sil~~ll~~Pn~--~~p~n~~a  132 (171)
T 1yf9_A           82 HPNVDERSGSVC---LDVINQ----TWTPMYQ---LENIFDVFLPQLLRYPNP--SDPLNVQA  132 (171)
T ss_dssp             BTTBCTTTCBBC---HHHHHH----HCCTTCC---THHHHHTHHHHHHHSCCS--SCCSCHHH
T ss_pred             cccCcccCCeEe---cccccc----CCCCCCc---HHHHHHHHHHHHHhCCCC--CCcccHHH
Confidence            999995599999   557763    6999876   99999997 799998854  56766644

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.4e-31  Score=223.10  Aligned_cols=121  Identities=18%  Similarity=0.308  Sum_probs=104.4

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++||++|++   +| +++.+. +   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        25 ~a~~RL~kEl~~l~~---~g-~~v~~~-d---dl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HP   96 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE---SK-HEVTIL-G---GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHP   96 (179)
T ss_dssp             HHHHHHHHHHHHHHH---SS-SCEEEE-E---ETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHhcCc---CC-CEEEEC-C---CCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccC
Confidence            478999999999985   35 666665 3   589999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHH-HHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLI-VCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~-I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+..+|+||   |++|.+    .|+|+++   |++||++ |++||.+|+.  ++|+++..+
T Consensus        97 NV~~~~G~IC---L~iL~~----~WsP~~t---i~~iL~s~I~~Ll~~Pn~--~~p~n~eaa  146 (179)
T 2z5d_A           97 NIDEASGTVC---LDVINQ----TWTALYD---LTNIFESFLPQLLAYPNP--IDPLNGDAA  146 (179)
T ss_dssp             TBCTTTCBBC---HHHHHH----HCCTTCC---TTHHHHTHHHHHHHSCCC--SSCSCHHHH
T ss_pred             cCCCCCCeEe---cccccc----CCCCCCC---HHHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            9993399999   556763    7999876   9999999 9999999854  667776543

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=1e-30  Score=236.46  Aligned_cols=132  Identities=18%  Similarity=0.215  Sum_probs=110.9

Q ss_pred             CCccHHHHHHHHHHHhHcCCCCCc---EEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeee
Q psy15032         74 SVVPRNFRLLEELEHGQRGVGDGT---ISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFV  150 (226)
Q Consensus        74 ~~~~r~rRL~kEL~~L~~~~~~g~---is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~  150 (226)
                      ....+.+||++|+++|++++++|.   +.+.+.++   |++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus        73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ed---nl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEE---RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESS---CTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCC---CccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            344689999999999999888762   33444444   799999999999999999999999999999999999999999


Q ss_pred             cc-----cccceeeCCCCeEEccchhhccccc---CCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        151 SR-----INMTCINNTSGIVVVIMFWVMIEAK---ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       151 Tp-----I~HPNV~~~~G~ICl~~LsiL~~w~---~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      |+     +|||||+ .+|+||   |++|++|+   .+.|+|+++  ||.+||++|++||.++....+.|.++
T Consensus       150 T~~g~~~ifHPNV~-~~G~IC---LsiL~~~~g~~~e~WsPa~s--tI~~VLlsIqsLL~~~~Pn~~dP~~~  215 (323)
T 3ceg_A          150 TTGGHSVRFNPNLY-NDGKVC---LSILNTWHGRPEEKWNPQTS--SFLQVLVSVQSLILVAEPYFNEPGYE  215 (323)
T ss_dssp             CSTTTTCCCBTTBC-TTCBBC---CGGGTSSCCCGGGSCCTTTC--CHHHHHHHHHHHTSCSSGGGGSTTGG
T ss_pred             ccCCCcccccCCCC-cCCeEe---chhhccccCCCcCCCCcCcC--CHHHHHHHHHHHHcCCCCCCCCccCH
Confidence            99     9999999 899999   56888886   368999873  59999999999997543334556554

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=1.6e-30  Score=219.28  Aligned_cols=117  Identities=13%  Similarity=0.142  Sum_probs=98.9

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ..+.+||++|+++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~-i~~~p~~~---nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~   86 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPY-ICAEPLPS---NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--N   86 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred             cHHHHHHHHHHHHHHhCCCCC-EEEEEcCC---ccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--C
Confidence            358899999999999999888 88877654   79999999999999999999999999999999999999999999  9


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      ||++ .+|+||+   ++|+.| .+.|+|+++   |.+||.+|++||.+++.
T Consensus        87 ~~~~-~~G~ICL---~iL~~~-~~~W~P~~t---i~~vL~si~sll~~p~p  129 (187)
T 2f4w_A           87 GRFK-CNTRLCL---SITDFH-PDTWNPAWS---VSTILTGLLSFMVEKGP  129 (187)
T ss_dssp             SSBC-TTSCBC--------------CCTTCC---HHHHHHHHHHHHHSCCC
T ss_pred             ceec-cCCeEee---eccccC-ccCCCCcCc---HHHHHHHHHHHhcCCCC
Confidence            9999 8999995   567543 357999876   99999999999999843

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.97  E-value=6.4e-31  Score=243.94  Aligned_cols=124  Identities=27%  Similarity=0.487  Sum_probs=111.1

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.|||++|+++|++++++| +++.+.++   |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 ~a~~RL~kEl~~l~~~~~~~-~~~~p~~~---nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   78 (399)
T 4ddg_A            3 MALKRIHKELNDLARDPPAQ-CSAGPVGD---DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   78 (399)
T ss_dssp             HHHHHHHHHHHHHHHSCCSS-EEEEEETT---EEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCC-EEEEEcCC---cceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccc
Confidence            36899999999999999888 88887765   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||+   ++|.    +.|+|+++   |.+||.+|++||.+|+.  +.|+++..+
T Consensus        79 nv~-~~G~iCl---~il~----~~W~p~~~---i~~vL~~i~~ll~~pnp--~~p~n~~aa  126 (399)
T 4ddg_A           79 NIN-SNGSISL---DILR----SQWSPALT---ISKVLLSICSLLCDPNP--DDPLVPEIA  126 (399)
T ss_dssp             TBC-TTCBBCC---GGGT----TSCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSHHHH
T ss_pred             ccC-CCCeEeC---cccc----cCCCcccc---HHHHHHHHHHHHcCCCC--CchhhHHHH
Confidence            999 8999995   4665    47999876   99999999999999855  567766443

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.97  E-value=3.9e-31  Score=218.96  Aligned_cols=125  Identities=19%  Similarity=0.336  Sum_probs=105.0

Q ss_pred             cHHHHHHHHHHHhHcCC------------CCCcEEEEecCCCCCCcceEEEEEeCCCCCCCC--CCeEEEEEEeCCCCCC
Q psy15032         77 PRNFRLLEELEHGQRGV------------GDGTISWGLENDDDMTLTHWTGMIIGPPRTPYE--NRMYSLKIECGPRYPD  142 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~------------~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYe--GG~f~~~I~fP~~YP~  142 (226)
                      .+.|||++|+++|++++            +.+ +.+.+.++   |+++|+++|.||++|||+  ||.|+++|.||++||+
T Consensus         8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~-i~~~~~~~---nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~   83 (167)
T 4ds2_A            8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHST-AIFSVDTD---TIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPH   83 (167)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTC----CCSSC-EEEEEEES---STTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTT
T ss_pred             HHHHHHHHHHHHHHhCcccccccccccCCCCc-EEEEeCCC---cccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCC
Confidence            35699999999999876            455 77776655   799999999999999999  9999999999999999


Q ss_pred             CCCeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHH-HHHHHHhccccCCCCCCCCcc
Q psy15032        143 EPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYL-IVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       143 ~PP~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~-~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      +||+|+|.|++|||||+ .+|+||+   ++|.    +.|+|+++   +++||+ .|++|+.+.....+.|+++..
T Consensus        84 ~pP~v~f~t~i~HPnv~-~~G~iCl---~il~----~~W~p~~~---i~~vll~~l~~l~~~~~pn~~~p~n~ea  147 (167)
T 4ds2_A           84 EPPTVRFVTPVYSPLVT-GEGGICD---RMVN----DFWTPDQH---ASDVIKLVLDRVFSQYKSRRDDDVNPEA  147 (167)
T ss_dssp             SCCEEEESSCCCCSSCC-TTSCCCT---HHHH----TTCCTTSC---HHHHHHHHHHHHHTSTTSCCSCCCCHHH
T ss_pred             CCCEEEEeCCcccccCC-CCCEEEc---ccCc----CCCCCCCC---hHHHHHHHHHHHHhcCCCCCcchHhHHH
Confidence            99999999999999999 9999995   5665    47999886   999754 677788764334566766543

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.97  E-value=1.1e-30  Score=220.85  Aligned_cols=123  Identities=14%  Similarity=0.237  Sum_probs=105.0

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEe---cCCCCCCcc---eEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeee
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGL---ENDDDMTLT---HWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRF  149 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~---~~~d~~nl~---~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F  149 (226)
                      ..+.+||++||++|+  .++| +++..   .+++  |++   +|+++|. |++|||+||.|+++|.||++||++||+|+|
T Consensus        28 s~a~~RL~kEl~~l~--~~~~-i~~~~~~~p~~~--nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f  101 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPT-VTLNVITSPDSA--DRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC  101 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTT-EEEEEEECTTCC--CTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred             cHHHHHHHHHHHhcc--CCCC-EEEEecCCCCCc--cCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence            457899999999998  5566 77762   3333  799   9999997 888999999999999999999999999999


Q ss_pred             ecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        150 VSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       150 ~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      .|+||||||+ .+|+||++   +|.    +.|+|+++   |++||.+|++||.+|+.  ++|+++..+
T Consensus       102 ~t~i~HPnV~-~~G~iCl~---iL~----~~W~p~~~---i~~vL~~i~~ll~~pn~--~~pln~~aa  156 (190)
T 3o2u_A          102 LKKIFHPNID-LKGNVCLN---ILR----EDWSPALD---LQSIITGLLFLFLEPNP--NDPLNKDAA  156 (190)
T ss_dssp             CSCCCCTTBC-TTSBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSHHHH
T ss_pred             ecCcccCCCC-CCCeEech---hcc----CCCCCCCC---HHHHHHHHHHHHhCCCC--CcchhHHHH
Confidence            9999999999 89999955   665    48999776   99999999999999854  567665543

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=1.2e-30  Score=219.85  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=104.6

Q ss_pred             CccHHHHHHHHHHHhHcCC---CCCcEEEEecCCCCCCcceEEEEEeCC-CCCCCCC-----------CeEEEEEEeCCC
Q psy15032         75 VVPRNFRLLEELEHGQRGV---GDGTISWGLENDDDMTLTHWTGMIIGP-PRTPYEN-----------RMYSLKIECGPR  139 (226)
Q Consensus        75 ~~~r~rRL~kEL~~L~~~~---~~g~is~~~~~~d~~nl~~W~~~I~Gp-~~TpYeG-----------G~f~~~I~fP~~  139 (226)
                      ...+.+||++||++|++++   +.+ +++.+.++   |+++|+++|.|| ++|||+|           |.|+++|.||++
T Consensus        25 s~~a~~RL~kEl~~l~~~~~~~~~~-~~~~p~~d---nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~  100 (186)
T 1zuo_A           25 SVQASDRLMKELRDIYRSQSYKTGI-YSVELIND---SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDN  100 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTS-EEEEEETT---EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCc-EEEEEcCC---ccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCC
Confidence            3457899999999999987   445 88887765   799999999998 9999998           899999999999


Q ss_pred             CCCCCCeeeeecccccc-eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        140 YPDEPPQCRFVSRINMT-CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       140 YP~~PP~V~F~TpI~HP-NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      ||++||+|+|.|++||| ||+ .+|+||+   ++|.   .+.|+|+++   |++||++|++||.++..
T Consensus       101 YP~~PP~V~f~tpi~hPnnV~-~~G~ICL---~iL~---~~~WsP~~t---i~~VL~sI~slL~~p~a  158 (186)
T 1zuo_A          101 FPFDPPFVRVVLPVLSGGYVL-GGGALCM---ELLT---KQGWSSAYS---IESVIMQINATLVKGKA  158 (186)
T ss_dssp             TTSSCCEEEEEESCEESTTBC-GGGBBCC---GGGS---TTTCCTTSC---HHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCeEEEeCCccCCCccC-CCCcEEe---ccCC---CCCCCCcCc---HHHHHHHHHHHHcCCCh
Confidence            99999999999999999 699 8999995   5675   257999876   99999999999999843

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.85  E-value=1.2e-22  Score=167.73  Aligned_cols=100  Identities=11%  Similarity=0.094  Sum_probs=84.4

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCC----------eEEEEEEeCCCCCCCCCe
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENR----------MYSLKIECGPRYPDEPPQ  146 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG----------~f~~~I~fP~~YP~~PP~  146 (226)
                      ...+||++|++.|++.       +.+..+   |+..|.+++.||+||+|+||          .|.++++||++||.+||+
T Consensus        32 ~w~~RL~eE~k~L~k~-------v~p~k~---n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPe  101 (172)
T 2z6o_A           32 LWVQRLKEEYQSLIRY-------VENNKN---ADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPE  101 (172)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHH---TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             HHHHHHHHHHHHHHHH-------hccCcc---ccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCe
Confidence            3589999999999983       223333   68999999999999999999          999999999999999999


Q ss_pred             eeeecc-cccceeeCCCCeEEccchhhccc--ccCCCCCCCCCCCCHHHHHH
Q psy15032        147 CRFVSR-INMTCINNTSGIVVVIMFWVMIE--AKATHYPVDLKTGTPDQVYL  195 (226)
Q Consensus       147 V~F~Tp-I~HPNV~~~~G~ICl~~LsiL~~--w~~~~W~Pa~s~~tI~~VL~  195 (226)
                      |+|.+. +|||||| .+|+||||   +|..  |.  .|+|+++   |.+||.
T Consensus       102 V~F~~~~~~hpnmY-~~G~ICLd---IL~kp~Ws--~~~P~~~---IahiL~  144 (172)
T 2z6o_A          102 IAVPELDGKTAKMY-RGGKICLT---DHFKPLWA--RNVPKFG---LAHLMA  144 (172)
T ss_dssp             CBCGGGTTTCSSBC-TTSBBCCC---TTHHHHHH--HHTTSCC---HHHHHH
T ss_pred             eeeCCCCCCCCCCC-CCCcEech---hhcccccc--ccCCccC---HHHHHh
Confidence            999998 9999999 89999966   5532  43  4779776   998874

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.62  E-value=1.2e-15  Score=125.80  Aligned_cols=114  Identities=11%  Similarity=0.012  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhHcCCCCCcEE--EEecCCCCCCcceEEEEEeCCCCCCCCCCe---EEEEEEeCCCCCCCCCeeeeecc-
Q psy15032         79 NFRLLEELEHGQRGVGDGTIS--WGLENDDDMTLTHWTGMIIGPPRTPYENRM---YSLKIECGPRYPDEPPQCRFVSR-  152 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is--~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~---f~~~I~fP~~YP~~PP~V~F~Tp-  152 (226)
                      .+|..+|+..+.+.-+.....  ....++   ...++-+.+.|.-.++|+||.   |.+.|.||++||++||.|.|.++ 
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~d---G~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t  106 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTHSD---GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN  106 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTT---SCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGG
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEcCC---CChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCC
Confidence            367778887765533222111  122233   346666777777779999999   88999999999999999987551 


Q ss_pred             ---------cc-cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        153 ---------IN-MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       153 ---------I~-HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                               |+ ||||| .+|+||   +++|.     .|+|..+  ++.+||.+|+++|.+|+.
T Consensus       107 ~~m~~~~~~I~~hpnVD-~~G~I~---lpyL~-----~W~p~~s--~L~~ll~~l~~lf~ep~~  159 (162)
T 3r3q_A          107 FDMNTISSSLPIQEYID-SNGWIA---LPILH-----AWDPAAM--NLIMVVQELMSLLHEPPQ  159 (162)
T ss_dssp             CCTTTSCTTSTHHHHBC-TTSBBC---CGGGG-----SCCGGGC--CHHHHHHHHHHTTSCCCC
T ss_pred             ccccccccccCCCCCCC-CCCcEe---Ccccc-----cCCCCcC--cHHHHHHHHHHHhcCCCC
Confidence                     77 99999 999999   56776     3666432  599999999999999954

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.57  E-value=2.3e-16  Score=128.08  Aligned_cols=81  Identities=19%  Similarity=0.292  Sum_probs=68.1

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCC----------eEEEEEEeCCCCCCCCCe
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENR----------MYSLKIECGPRYPDEPPQ  146 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG----------~f~~~I~fP~~YP~~PP~  146 (226)
                      ....||.+|+..|-+.-     ...-..|     ..|...+.||.||+|.|+          .|.++++||.+||.+||+
T Consensus        34 ~w~~RlkeEy~alI~yv-----~~nK~~d-----~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe  103 (168)
T 3kpa_A           34 KWTARLKEEYASLITYV-----EHNKASD-----SHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE  103 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHTT-----CCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHH-----Hhccccc-----CCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence            36789999999986531     1111122     459999999999999999          999999999999999999


Q ss_pred             eeeecc-cccceeeCCCCeEEcc
Q psy15032        147 CRFVSR-INMTCINNTSGIVVVI  168 (226)
Q Consensus       147 V~F~Tp-I~HPNV~~~~G~ICl~  168 (226)
                      |+|.+. ++|||+| .+|+||||
T Consensus       104 I~Fp~ldgkt~kmY-r~GkICLd  125 (168)
T 3kpa_A          104 IALPELEGKTVKMY-RGGKICMT  125 (168)
T ss_dssp             CBCGGGTTTCSSEE-TTTEECCC
T ss_pred             eecccccCcCcccc-CCCcEEec
Confidence            999995 8999999 89999977

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.38  E-value=2.9e-12  Score=103.99  Aligned_cols=107  Identities=18%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             HHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEE--EEEeCCCCCCCCCeeeeecc------c
Q psy15032         82 LLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSL--KIECGPRYPDEPPQCRFVSR------I  153 (226)
Q Consensus        82 L~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~--~I~fP~~YP~~PP~V~F~Tp------I  153 (226)
                      ..+|+..+.+.=+........-.....++..|.++|.    .+|+|+.|.+  .|.||++||++||.| |.++      .
T Consensus        25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~   99 (146)
T 3obq_A           25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK   99 (146)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred             hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence            3456666554332211222112233347999999998    7899999995  899999999999999 7766      4


Q ss_pred             ccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        154 NMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       154 ~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                      .||||| .+|+||   ++.|.+|     ++..  .++.+++..++++|...
T Consensus       100 ~~~~Vd-~~G~i~---lpyL~~W-----~~~~--snL~~ll~~l~~~F~~e  139 (146)
T 3obq_A          100 TGKHVD-ANGKIY---LPYLHEW-----KHPQ--SDLLGLIQVMIVVFGDE  139 (146)
T ss_dssp             CBTTBC-TTCBBC---CHHHHTC-----CTTT--CCHHHHHHHHHHHHHHS
T ss_pred             CCCCCC-CCCCEe---ccccccc-----CCCC--CCHHHHHHHHHHHHhhC
Confidence            899999 899999   6788754     4422  36999999999999876

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.66  E-value=0.26  Score=37.39  Aligned_cols=68  Identities=21%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeec
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVS  151 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~T  151 (226)
                      ...+...|+..|+.-=++. +...  .+.   -..+.+.|....+..-+.-.+.+.|.||++||..||.+...+
T Consensus        11 ~~e~q~~EleaL~sIy~d~-~~~~--~~~---~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDS-FTVL--SEN---PPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSS-EEEC--CSS---SCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCc-eEEc--cCC---CCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            4567788999988643444 4431  211   134444454222222223478899999999999999998765

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=92.04  E-value=1.1  Score=33.79  Aligned_cols=112  Identities=13%  Similarity=0.002  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCC--CCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYE--NRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYe--GG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      .+...|+.-|+.-=++. +...-.... ..-..+.+.+..+.+..-+  .-.+.+.|.+|++||..+|.+...+..   +
T Consensus        11 e~~~~EleaL~SIY~de-~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~---~   85 (128)
T 2day_A           11 WVLPSEVEVLESIYLDE-LQVIKGNGR-TSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR---G   85 (128)
T ss_dssp             CHHHHHHHHHHHHSTTT-EEEECCTTS-SCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE---S
T ss_pred             HHHHHHHHHHHHHCCCc-eEEecCCCC-CCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCC---C
Confidence            35778988888643444 443221110 0123344445422221111  236789999999999999999877632   2


Q ss_pred             eeCCCCeEEccchhhcc-cccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        158 INNTSGIVVVIMFWVMI-EAKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~-~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                      +.   ......+...|. .|. + ...   .--|.+++..++..|.+.
T Consensus        86 L~---~~~~~~L~~~L~~~~~-e-~~G---~~mif~lv~~lqe~l~~~  125 (128)
T 2day_A           86 LS---DEQIHTILQVLGHVAK-A-GLG---TAMLYELIEKGKEILSGP  125 (128)
T ss_dssp             SC---HHHHHHHHHHHHHHHH-H-TTT---SCCHHHHHHHHHHHHCCC
T ss_pred             CC---HHHHHHHHHHHHHHHH-H-hCC---CEEhHHHHHHHHHHHHhc
Confidence            21   111111112222 221 0 111   113888888888888764

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=88.99  E-value=0.84  Score=35.04  Aligned_cols=71  Identities=14%  Similarity=0.065  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCC---CCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeec
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDD---MTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVS  151 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~---~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~T  151 (226)
                      ..+-..|+..|+.-=++. +...-...+.   ..-..+.+.|....+ .-..-.+.+.|.+|++||..||.|...+
T Consensus        12 ~e~q~~EleaL~SIY~d~-~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDD-FTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSS-EECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHChhh-heecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            345678888888643333 3321110000   012345666663322 1113467899999999999999998765

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.27  E-value=1.2  Score=33.77  Aligned_cols=68  Identities=13%  Similarity=-0.071  Sum_probs=38.5

Q ss_pred             HHHHHHHHhHcCCCC-CcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeec
Q psy15032         81 RLLEELEHGQRGVGD-GTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVS  151 (226)
Q Consensus        81 RL~kEL~~L~~~~~~-g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~T  151 (226)
                      +...|+..|+.-=++ +-+...-....  +...+.+.+...... =..-.+.+.|.+|++||..||.+...+
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~--~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSET--DGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSS--SCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCC--CCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            456788888753221 11221111110  234566666532210 012368899999999999999998764

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=84.47  E-value=0.49  Score=36.20  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCC-C-CCcceEEEEEeCCCC-C-CCCCCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDD-D-MTLTHWTGMIIGPPR-T-PYENRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d-~-~nl~~W~~~I~Gp~~-T-pYeGG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      ....+...|+..|+.-=++. +...-.... . ..-....+.+. +.+ . .-..-.+.+.|.||++||..+|.|...+.
T Consensus        10 ~~~e~q~~EleaL~SIY~d~-~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~   87 (137)
T 1ukx_A           10 SYSQRQDHELQALEAIYGSD-FQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             CHHHHHHHHHHHHHHHTSSS-EEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHCccc-ceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEecC
Confidence            34567788998888643343 432211000 0 00123444454 221 1 00113688999999999999999987432


Q ss_pred             cccceeeCC-CCeEEccchhhccc-ccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        153 INMTCINNT-SGIVVVIMFWVMIE-AKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       153 I~HPNV~~~-~G~ICl~~LsiL~~-w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                         .++... --.+|    ..|.. |..  ...   .--|.+++..++..|...
T Consensus        88 ---~~L~~~~~~~L~----~~L~~~~~e--~~G---~~mif~lv~~lqe~l~~~  129 (137)
T 1ukx_A           88 ---KGLSNESVNLLK----SHLEELAKK--QCG---EVMIFELAHHVQSFLSEH  129 (137)
T ss_dssp             ---ESSSSSHHHHHH----HHHHHHHHH--HTT---SCCHHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHH----HHHHHHHHH--hCC---CEEhHHHHHHHHHHHHhc
Confidence               122200 00112    22221 110  000   113888888888888765

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=83.68  E-value=0.77  Score=36.07  Aligned_cols=68  Identities=13%  Similarity=-0.064  Sum_probs=38.6

Q ss_pred             eEEEEEEeCCCCCCCCCeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcccc
Q psy15032        129 MYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVD  206 (226)
Q Consensus       129 ~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~  206 (226)
                      .+.+.|.+|++||..||.+...+.-... .  ..-.+|-++...+.+   + ...   .--|.+++..|+..+.+...
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~~l~~-~--~~~~L~~~L~~~~~~---~-~~G---~~mif~lv~~lqe~l~~~~~  141 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSVLLSR-S--QQTQLNTDLTAFLQK---H-CHG---DVCILNATEWVREHASGYVS  141 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECTTSCH-H--HHHHHHHHHHHHHHH---S-SCS---SCCSHHHHHHHHHHHHHHCC
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcccCCH-H--HHHHHHHHHHHHHHH---h-cCC---cchHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999877643100 0  001123111122211   1 111   11377888888887776643

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=82.63  E-value=1.1  Score=35.54  Aligned_cols=24  Identities=21%  Similarity=0.054  Sum_probs=21.7

Q ss_pred             eEEEEEEeCCCCCCCCCeeeeecc
Q psy15032        129 MYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus       129 ~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      .+.+.|.+|.+||..+|.+...+.
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC
Confidence            789999999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	3e-33
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	3e-31
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-13
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	5e-12
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-11
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-10
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	3e-10
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	4e-10
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	4e-10
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-10
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-09
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-09
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-09
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	4e-09
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-08
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	1e-08
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-08
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	3e-08
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	4e-08
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-08
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-07
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	1e-07
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	5e-07
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	5e-07
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	1e-05
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-05
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-05
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	3e-05

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  114 bits (287), Expect = 3e-33
 Identities = 68/91 (74%), Positives = 82/91 (90%)

Query: 75  VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 134
            VPRNFRLLEELE GQ+GVGDGT+SWGLE+D+DMTLT WTGMIIGPPRT YENR+YSLKI
Sbjct: 3   KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 62

Query: 135 ECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           ECGP+YP+ PP  RFV++INM  +N+++G+V
Sbjct: 63  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 93

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score =  109 bits (274), Expect = 3e-31
 Identities = 53/92 (57%), Positives = 71/92 (77%)

Query: 74  SVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLK 133
           S VPRNFRLLEELE G++G G  + S+GL + DD+T+T W G I+GPP + +ENR+YSL 
Sbjct: 1   SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 60

Query: 134 IECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
           I+CGP YPD PP+  F+S+IN+ C+N T+G V
Sbjct: 61  IDCGPNYPDSPPKVTFISKINLPCVNPTTGEV 92

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 2e-13
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 79  NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
           +  L  +L    +   +G  S GL +D+D+    W  +IIGPP T YE  ++   +    
Sbjct: 1   SLLLRRQLAELNKNPVEG-FSAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPK 57

Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVI 168
            YP  PP+ +F++ I    ++    + + I
Sbjct: 58  DYPLRPPKMKFITEIWHPNVDKNGDVCISI 87

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 59.8 bits (144), Expect = 5e-12
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 79  NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
           +  L ++L   +R   DG  S GL +D+D+    W  ++IGPP T YE   +   ++   
Sbjct: 2   SLLLKKQLADMRRVPVDG-FSAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPR 58

Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
            YP +PP+ +F+S I    I+    + + I+
Sbjct: 59  DYPQKPPKMKFISEIWHPNIDKEGNVCISIL 89

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 57.9 bits (139), Expect = 2e-11
 Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 78  RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
           R  R+++E++  +       I+    ++ D+   H  G  +GPP TPYE   + + IE  
Sbjct: 2   RAKRIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVP 58

Query: 138 PRYPDEPPQCRFVSRINMTCINNTSGIVVVIMFWVM 173
             YP +PP+ +F +++    I++ +G + + +    
Sbjct: 59  MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNA 94

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 81  RLLEELEHGQRGVGDGTISWGLEN-DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
           RL +E +  ++    G ++   +N D  M L +W   I G   TP+E  ++ L++     
Sbjct: 6   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65

Query: 140 YPDEPPQCRFVSRINMTCINNTSGIVVVIM 169
           YP  PP+C+F   +    +  +  + + I+
Sbjct: 66  YPSSPPKCKFEPPLFHPNVYPSGTVSLSIL 95

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 3e-10
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL   Q     G ++   ++  +  +T W   + G P T YE   + L  +   RY
Sbjct: 7   RLQKELLALQNDPPPG-MTLNEKSVQNS-ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 64

Query: 141 PDEPPQCRFVSRINMTCINNTSG 163
           P + PQ  F         +  S 
Sbjct: 65  PFDSPQVMFTGENIPVHPHVYSN 87

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL+   R       S G   DD   L HW   I+GPP +PY+  ++ L I     Y
Sbjct: 5   RIQKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHY 181
           P +PP+  F +RI    I N++G + + +         T  
Sbjct: 61  PFKPPKVAFTTRIYHPNI-NSNGSICLDILRSQWSPALTIS 100

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 80  FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPR 139
           +R+ +EL +          +  +  ++   +  W    +G   T Y N +Y LKI     
Sbjct: 1   YRIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDD 56

Query: 140 YPDEPPQCRFVSRINMTCINNTSGIV 165
           YP +PP   F+ +        ++G +
Sbjct: 57  YPLKPPIVYFLQKPPKHTHVYSNGDI 82

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++ELE  Q+      +     +D +  +  W   ++ P + PY  + ++L+I   P Y
Sbjct: 4   RVVKELEDLQKKPPPY-LRNLSSDDAN--VLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 59

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
           P +PP  +F ++I    ++    I + I+  
Sbjct: 60  PFKPPMIKFTTKIYHPNVDENGQICLPIISS 90

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +++          T      + DD  L ++  ++I P    Y++  +    + G  Y
Sbjct: 7   RIQKDINELNL---PKTCDISFSDPDD--LLNFK-LVICPDEGFYKSGKFVFSFKVGQGY 60

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVI 168
           P +PP+ +  + +    I+    + + I
Sbjct: 61  PHDPPKVKCETMVYHPNIDLEGNVCLNI 88

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 70  LKLFSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRM 129
           LK  + + +  R  +           G +S  +   D   +  W G I GP  TPYE   
Sbjct: 7   LKELADIQQLQRAHDSEPAATHSTSHG-VSAQIVGGD---IHRWRGFIAGPLGTPYEGGH 62

Query: 130 YSLKIECGPRYPDEPPQCRFVSRINMTCINNTSG 163
           ++L I   P YP  PP+ +FV++I    I++ +G
Sbjct: 63  FTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 96

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+ +EL            S G + D+   +  W   I+GPP + YE  ++ L I   P Y
Sbjct: 6   RIQKELAEITLDPPPN-CSAGPKGDN---IYEWRSTILGPPGSVYEGGVFFLDITFSPDY 61

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMF 170
           P +PP+  F +RI    IN+   I + I+ 
Sbjct: 62  PFKPPKVTFRTRIYHCNINSQGVICLDILK 91

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL+ + +  +     G +S     D+ M    W  MIIGP  TPYE+  + L +E    Y
Sbjct: 7   RLMRDFKRMKEDAPPG-VSASPLPDNVM---VWNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 141 PDEPPQCRFVSRINMTCINNTSGI 164
           P++PP  +F+S +    +     I
Sbjct: 63  PNKPPHVKFLSEMFHPNVYANGEI 86

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 81  RLLEELEHGQRG--VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGP 138
           R+  E +   +        I   L +++    T   G I GPP TPYE   Y L+I+   
Sbjct: 8   RIKREFKEVLKSEETSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQLEIKIPE 64

Query: 139 RYPDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
            YP  PP+ RF+++I    I++ +G + + +  
Sbjct: 65  TYPFNPPKVRFITKIWHPNISSVTGAICLDILK 97

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 103 ENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN 159
           +     T+  +     GP  TPYE+  + L ++    YP + P   F +RI    ++
Sbjct: 18  KVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD 74

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
            L  +    +     G I+    ++D   +  W   I G   + ++  ++ L I     Y
Sbjct: 8   LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 63

Query: 141 PDEPPQCRFVSRINMTCIN 159
              PP  +F++      ++
Sbjct: 64  NYAPPVVKFITIPFHPNVD 82

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 78  RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECG 137
           R  RL  EL         G I+   + D    +      I+G   TPYE  ++ L++   
Sbjct: 3   RASRLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVIIP 58

Query: 138 PRYPDEPPQCRFVSRINMTCINNT 161
            RYP EPPQ RF++ I    I++ 
Sbjct: 59  ERYPFEPPQIRFLTPIYHPNIDSA 82

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 47.8 bits (113), Expect = 8e-08
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           R+++E E        G I+    +D+   L ++   I GP ++PYE+ ++ L++     Y
Sbjct: 7   RIIKETEKLVSDPVPG-ITAEPHDDN---LRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFWVM 173
           P E P+ RF+++I    I+    I + ++    
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNW 95

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-07
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 77  PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 136
           P   RL +EL       GD  IS   E+D+   L  W G I G   T YE+  Y L +E 
Sbjct: 1   PVGKRLQQELMTLMMS-GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEF 56

Query: 137 GPRYPDEPPQCRFVSRINMTCINNT 161
              YP   P  +F++      ++  
Sbjct: 57  PSGYPYNAPTVKFLTPCYHPNVDTQ 81

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL +EL       GD  I+   + D+   L  W   + GP  T YE+  Y L +E    Y
Sbjct: 13  RLQQELRTLLMS-GDPGITAFPDGDN---LFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68

Query: 141 PDEPPQCRFVSRINMTCINNT 161
           P +PP  +F +      ++ +
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQS 89

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL++ELE  ++       +  ++  +   L  W G+I  P   PY+   + ++I     Y
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEAN---LLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
           P +PP+  F ++I    I+    + + ++  
Sbjct: 59  PFKPPKITFKTKIYHPNIDEKGQVCLPVISA 89

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 5e-07
 Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 13/97 (13%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPP------------RTPYENR 128
           RL++EL    R     T  + +E  +D  L  W   +                +      
Sbjct: 8   RLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 66

Query: 129 MYSLKIECGPRYPDEPPQCRFVSRINMTCINNTSGIV 165
              L       +P +PP  R V  +         G +
Sbjct: 67  YILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 103

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RL ++    ++       +  L ++    +  W  ++ GP  TPYE   Y  K+     +
Sbjct: 5   RLKQDYLRIKKDPVPYICAEPLPSN----ILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 60

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVIMFW 171
           P +PP    ++       N    + +     
Sbjct: 61  PFKPPSIYMITPNGRFKCNTRLCLSITDFHP 91

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 110 LTHWTGMIIGPPRTPYENRMYSL--KIECGPRYPDEPPQCRFVSRINMTCINN 160
            +     + G    PY    Y++   +     YP  PP C      +MT    
Sbjct: 46  SSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTG 98

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
           RLL+EL+   +    G I  G ++++++    W  +I GPP TPY + +++ K+E    Y
Sbjct: 7   RLLKELQQLIKDSPPG-IVAGPKSENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDY 63

Query: 141 PDEPPQCRFVSRINMTCINNTSGIVVVI 168
           P  PP+  F   I    I     + + I
Sbjct: 64  PLSPPKLTFTPSILHPNIYPNGEVCISI 91

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 81  RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRY 140
            + +E+        DG   +  E D    LT     I GP  TPY   ++ +K+  G  +
Sbjct: 10  LVYKEVTTLTADPPDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 65

Query: 141 PDEPPQCRFVSRINMTCINNT 161
           P  PP+  F+++I    +   
Sbjct: 66  PASPPKGYFLTKIFHPNVGAN 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.98
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.98
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	99.98
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	99.97
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.95
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.95
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.73
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.6
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	95.37
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	93.77
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	84.34
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	82.55

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=1e-35  Score=237.77  Aligned_cols=129  Identities=43%  Similarity=0.817  Sum_probs=112.0

Q ss_pred             CccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         75 VVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        75 ~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      .+||.+||++||++++++.+++.+++.+.++|+.|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         2 ~~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~   81 (136)
T d1jatb_           2 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   81 (136)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             CCchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecccc
Confidence            46899999999999999887777889888888778999999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      ||||+..+|.||++   ++..   +.|+|+++   |.+||++|++||.+|++  ++++||
T Consensus        82 HpnV~~~~G~icl~---~l~~---~~Wsp~~t---i~~IL~~i~~lL~~P~n--~~~~q~  130 (136)
T d1jatb_          82 LPCVNPTTGEVQTD---FHTL---RDWKRAYT---METLLLDLRKEMATPAN--KKLRQP  130 (136)
T ss_dssp             CTTBCTTTCBBCTT---SHHH---HTCCTTCC---HHHHHHHHHHHHTSHHH--HTSCCC
T ss_pred             ccccccCCCeEECC---CCcc---cCcCccCc---HHHHHHHHHHHHcCCCC--CCCCCC
Confidence            99999778999965   4442   36999876   99999999999999876  445555

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=235.21  Aligned_cols=132  Identities=55%  Similarity=0.935  Sum_probs=114.9

Q ss_pred             cCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032         73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus        73 ~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      +++++|.+||+|||++++++++++.+.....++++.|+++|+++|.||.+|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 ~~~~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~   80 (139)
T d2a4da1           1 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK   80 (139)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             CCccchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecC
Confidence            46789999999999999999999877777776666689999999999999999999999999999999999999999999


Q ss_pred             cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        153 INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       153 I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      +|||||+..+|.+|++.++.++     .|+|+++   |++||++|++||.++.  ..+.+|+
T Consensus        81 i~HpnV~~~~g~~~~~~l~~l~-----~Wsp~~t---i~~iL~~i~slL~~pe--N~~~p~~  132 (139)
T d2a4da1          81 INMNGVNSSNGVVDPRAISVLA-----KWQNSYS---IKVVLQELRRLMMSKE--NMKLPQP  132 (139)
T ss_dssp             CCCTTBCTTTCBBCGGGSHHHH-----TCCTTCC---HHHHHHHHHHHHTSTT--TTTCCCC
T ss_pred             cccccCcCCCCEEcceecCccc-----CCCccCc---HHHHHHHHHHHHCCCC--CCCCCCC
Confidence            9999999778888866555655     5889775   9999999999999863  3444443

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=228.06  Aligned_cols=115  Identities=23%  Similarity=0.444  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceee
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN  159 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~  159 (226)
                      -||+||+++|++++++| +++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~L~kEl~~l~~~~~~g-i~~~~~~~~--dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   78 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEG-FSAGLIDDN--DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD   78 (125)
T ss_dssp             HHHHHHHHHHHHSCCTT-EEEEESSTT--CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             chHHHHHHHHHhCCCCC-EEEEeCCCC--CceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC
Confidence            58999999999999998 888876554  799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccchhhcccc---------cCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        160 NTSGIVVVIMFWVMIEA---------KATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       160 ~~~G~ICl~~LsiL~~w---------~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                       .+|.||+   ++|+.+         ..+.|+|+++   +++||++|++||.+|
T Consensus        79 -~~G~iCl---~iL~~~~~~~~~~~~~~~~Wsp~~t---i~~iL~~i~~ll~~P  125 (125)
T d2awfa1          79 -KNGDVCI---SILHEPGEDKYGYEKPEERWLPIHT---VETIMISVISMLADP  125 (125)
T ss_dssp             -TTCBBCC---GGGSCC---------CTTSCCTTCC---HHHHHHHHHHHHSCC
T ss_pred             -CCCEEEe---ccccCccccccccccccCCcCccCc---HHHHHHHHHHHhhCc
Confidence             9999995   466643         2578999876   999999999999875

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=234.06  Aligned_cols=127  Identities=26%  Similarity=0.380  Sum_probs=113.8

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      |.|.+||++|+++|++++++| +.+.+.++   |++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++||
T Consensus         1 m~~~~Rl~kE~~~l~~~~~~g-i~~~p~~~---~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   76 (154)
T d1yh2a1           1 MQRASRLKRELHMLATEPPPG-ITCWQDKD---QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH   76 (154)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CcHHHHHHHHHHHHHHCcCCC-EEEEECCc---chhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCc
Confidence            458899999999999999999 88888765   69999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |||+ .+|.||   +++++.+..+.|+|+++   +.+||++|++||.+++-  ++|+++.
T Consensus        77 PnV~-~~g~ic---l~~l~~~~~~~w~p~~~---i~~il~~i~~ll~~p~~--~~p~n~e  127 (154)
T d1yh2a1          77 PNID-SAGRIC---LDVLKLPPKGAWRPSLN---IATVLTSIQLLMSEPNP--DDPLMAD  127 (154)
T ss_dssp             TTBC-TTCBBC---CGGGSCTTTSCCCTTSC---HHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred             CCcC-CCCCcc---cccccCCccccCCcccc---HHHHHHHHHHHhccCCC--CCchhHH
Confidence            9999 899999   55787766678999886   99999999999998743  4555543

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-34  Score=222.51  Aligned_cols=111  Identities=22%  Similarity=0.377  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc--ccc
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI--NMT  156 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI--~HP  156 (226)
                      .|||++|+++|++++++| +++.+..+++ |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++  |||
T Consensus         5 ~kRL~kEl~~l~~~~~~~-~~~~~~~~~~-~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hp   82 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPG-MTLNEKSVQN-SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP   82 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTT-CCCCTTCCCC-SCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHhhCCCCC-eEEEEecCCC-CceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccc
Confidence            499999999999999988 6665543322 799999999999999999999999999999999999999999987  999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIR  202 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~  202 (226)
                      ||+ .+|+||++   +|+    +.|+|+++   |++||.+|++||+
T Consensus        83 nv~-~~G~iCl~---~l~----~~Wsp~~t---i~~vl~~i~~lLs  117 (117)
T d2a7la1          83 HVY-SNGHICLS---ILT----EDWSPALS---VQSVCLSIISMLS  117 (117)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTSC---HHHHHHHHHHHTC
T ss_pred             cCc-CCCeEEee---cCc----CCCCCcCc---HHHHHHHHHHHhC
Confidence            999 89999955   665    47999876   9999999999984

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=8.7e-34  Score=231.72  Aligned_cols=129  Identities=22%  Similarity=0.375  Sum_probs=112.2

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.|||++|+++|++++++| +.+.+.+++  |++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 ~a~kRL~~E~~~l~~~~~~g-i~~~p~~e~--nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   79 (164)
T d2ucza_           3 TAQKRLLKELQQLIKDSPPG-IVAGPKSEN--NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   79 (164)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEESSSS--CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             HHHHHHHHHHHHHhhCCCCC-EEEEECCcc--chhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceec
Confidence            36799999999999999998 888876554  799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhccc---------ccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIE---------AKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~---------w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||++   +|+.         |..+.|+|+++   |.+||.+|+++|.+|+.  ++|+++-.+
T Consensus        80 nv~-~~G~vCl~---il~~~~~~~~~~~~~~~~w~p~~t---i~~il~~i~~ll~~p~~--~~p~n~eaa  140 (164)
T d2ucza_          80 NIY-PNGEVCIS---ILHSPGDDPNMYELAEERWSPVQS---VEKILLSVMSMLSEPNI--ESGANIDAC  140 (164)
T ss_dssp             TBC-TTSBBCCG---GGSCCCSCTTSTTTTTTSCCTTCC---HHHHHHHHHHHHHSCCG--GGCCCHHHH
T ss_pred             eEc-CCCCeeec---cccCccccccccccccccCCcccc---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence            999 89999965   5543         34678999876   99999999999999853  566655433

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.1e-33  Score=226.71  Aligned_cols=121  Identities=30%  Similarity=0.524  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      ++|||++|+++|++++++| +++.+.++   |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 a~kRL~~E~~~l~~~~~~~-i~~~~~~~---n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQ-CSAGPVGD---DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   77 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSS-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCC-eEEEECCC---chhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceee
Confidence            5799999999999999988 88888766   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |+ .+|+||   ++++++    +|+|+++   +.+||.+|+++|.+++.  +.+.++.
T Consensus        78 V~-~~G~iC---l~~l~~----~w~p~~~---i~~Il~~i~~ll~~p~~--~~~~n~e  122 (147)
T d1z2ua1          78 IN-SNGSIC---LDILRS----QWSPALT---ISKVLLSICSLLCDPNP--DDPLVPE  122 (147)
T ss_dssp             BC-TTCBBC---CGGGTT----TCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred             EC-CCCCEe---eehhcc----cCCCCCC---HHHHHHHHHHHhccCCC--CCcccHH
Confidence            99 899999   557775    5999776   99999999999999855  4455543

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=2.2e-33  Score=226.15  Aligned_cols=121  Identities=21%  Similarity=0.473  Sum_probs=108.1

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      ++.|||++|+++|++++++| +.+.+.++   |++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||
T Consensus         3 pa~rRl~~E~~~l~~~~~~g-i~~~p~~~---n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   78 (149)
T d1z3da1           3 PSRRRLMRDFKKLQEDPPAG-VSGAPTED---NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP   78 (149)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHhhCCCCC-EEEEECCC---chhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccce
Confidence            57899999999999999998 88887665   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      ||+ .+|.||+   ++|..    +|+|+++   |.+||.+|+++|.+++.  +.+.++
T Consensus        79 nI~-~~G~iCl---~~l~~----~w~p~~~---i~~il~~i~~ll~~p~~--~~p~n~  123 (149)
T d1z3da1          79 NVY-ADGSICL---DILQN----RWSPTYD---VAAILTSIQSLLDEPNP--NSPANS  123 (149)
T ss_dssp             TBC-TTCBBCC---GGGTT----SCCTTCC---HHHHHHHHHHTTSSCCC--SSCSCH
T ss_pred             eEc-CCCCEEe---ccccc----cCCCCCC---HHHHHHHHHHHhCCCCC--CChhhH
Confidence            999 8999995   56764    6999776   99999999999998743  445544

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=3.7e-33  Score=227.06  Aligned_cols=128  Identities=21%  Similarity=0.319  Sum_probs=111.6

Q ss_pred             cCCccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032         73 FSVVPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus        73 ~~~~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      .......|||++||++|++++++| +.+.+.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+
T Consensus         5 ~~~~~~~kRl~kEl~~l~~~~~~g-i~~~p~~~---dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~   80 (156)
T d2e2ca_           5 KERHSVSKRLQQELRTLLMSGDPG-ITAFPDGD---NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cccchHHHHHHHHHHHHhHCCCCC-EEEEECCC---cccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeecccc
Confidence            333456899999999999999888 88887654   79999999999999999999999999999999999999999999


Q ss_pred             cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        153 INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       153 I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      +|||||+ .+|.||+   ++|.    +.|+|+++   |.+||++|++||.+|+.  ++|.+...+
T Consensus        81 i~Hpnv~-~~G~icl---~~l~----~~Wsp~~~---i~~vl~~i~~ll~~P~~--~~p~n~~aa  132 (156)
T d2e2ca_          81 CWHPNVD-QSGNICL---DILK----ENWTASYD---VRTILLSLQSLLGEPNN--ASPLNAQAA  132 (156)
T ss_dssp             CCBTTBC-TTCBBCC---GGGT----TTCCTTCC---HHHHHHHHHHHTTSCCC--SSCSCHHHH
T ss_pred             CcCCCCC-CCCCccc---cccC----CCCCCccc---HHHHHHHHHHHHhCCCC--CChhhHHHH
Confidence            9999999 8999995   4665    47999775   99999999999998853  567665443

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=4e-33  Score=224.88  Aligned_cols=123  Identities=22%  Similarity=0.437  Sum_probs=109.4

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      .++.|||++||++|++++++| +.+.+.++   |++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 t~A~kRl~~El~~l~~~~~~g-i~~~p~~~---n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPG-VSASPLPD---NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   77 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhHCCCCC-EEEEECCC---cHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCc
Confidence            457899999999999999988 88887765   79999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |||+ .+|.||+   +++.    +.|+|+++   |.+||.+|++||.+++.  +.+.++.
T Consensus        78 PnI~-~~G~icl---~~l~----~~W~p~~~---i~~il~~i~~ll~~p~~--~~~~n~e  124 (153)
T d1ayza_          78 PNVY-ANGEICL---DILQ----NRWTPTYD---VASILTSIQSLFNDPNP--ASPANVE  124 (153)
T ss_dssp             TTBC-TTSBBCC---GGGT----TTCCTTCC---HHHHHHHHHHHHTCCCC--SSCSSHH
T ss_pred             cCCC-CCCcccc---cccc----ccCCCcCc---HHHHHHHHHHHHcCCCC--CCcHHHH
Confidence            9999 8999994   5666    47999776   99999999999998743  3455543

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=224.96  Aligned_cols=125  Identities=25%  Similarity=0.362  Sum_probs=110.2

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      |..|||++|+++|++++++| +.+.+.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 p~~kRl~~El~~l~~~~~~~-i~~~~~~~---d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   76 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKG-ISAFPESD---NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP   76 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTT-EEEEEETT---EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             CHHHHHHHHHHHHhhCCCCC-EEEEEcCC---cccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcc
Confidence            46799999999999999888 88887655   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccC
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSG  218 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~  218 (226)
                      ||+ .+|.||++   ++.    +.|+|+++   |.+||.+|+++|.+++  .++|++...+.
T Consensus        77 nV~-~~G~icl~---~l~----~~W~p~~~---i~~il~~i~~ll~~p~--~~~p~n~~aa~  125 (146)
T d1i7ka_          77 NVD-TQGNISLD---ILK----EKWSALYD---VRTILLSIQSLLGEPN--IDSPLNTHAAE  125 (146)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCC--TTSCSCHHHHH
T ss_pred             cCC-CCCccccc---ccc----ccCCCCcC---HHHHHHHHHHHHhCCC--CCCchhHHHHH
Confidence            999 89999954   665    47999776   9999999999999884  35666655443

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=228.82  Aligned_cols=127  Identities=13%  Similarity=0.235  Sum_probs=111.7

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++++++++.| +++.+.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~a~~~L~kE~~~l~~~~~~g-i~v~p~~~---n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   79 (148)
T d1yrva1           4 RAYLLLHRDFCDLKENNYKG-ITAKPVSE---DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHP   79 (148)
T ss_dssp             HHHHHHHHHHHHHHHHCCTT-EEEEECST---TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHHHCCCCC-EEEEECCC---cccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccC
Confidence            46789999999999999888 88888776   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||++.+|+||+   ++|.+  .+.|+|+++   |.+||.+|+++|.+++  .++|+++..+
T Consensus        80 nV~~~~G~iC~---~~l~~--~~~W~p~~t---l~~vL~~I~~ll~~p~--~~~p~n~eaa  130 (148)
T d1yrva1          80 NVDPHTGQPCI---DFLDN--PEKWNTNYT---LSSILLALQVMLSNPV--LENPVNLEAA  130 (148)
T ss_dssp             TBCTTTCCBCC---HHHHC--GGGCCTTCC---HHHHHHHHHHHHTSCC--TTSCSCHHHH
T ss_pred             ceecCcccccc---cccCc--hhhcCcccc---HHHHHHHHHHHHhCCC--CCCchhHHHH
Confidence            99977899995   46653  347999775   9999999999999874  4667766443

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=6.4e-33  Score=223.04  Aligned_cols=121  Identities=26%  Similarity=0.489  Sum_probs=107.8

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.|||++|+++|++++++| +.+.+.++   |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         2 ~~~kRi~~E~~~l~~~~~~g-i~~~~~~~---n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   77 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPN-CSAGPKGD---NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHC   77 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTT-EEEEESSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhhCCCCC-EEEEECCc---ccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCc
Confidence            36899999999999999988 88887765   799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      ||+ .+|.||   |+++.+    +|+|+++   +.+||.+|++||.+|+.  +.|.+.
T Consensus        78 nv~-~~G~iC---l~~l~~----~W~p~~~---l~~il~~i~~ll~~p~~--~~p~n~  122 (148)
T d1y6la_          78 NIN-SQGVIC---LDILKD----NWSPALT---ISKVLLSICSLLTDCNP--ADPLVG  122 (148)
T ss_dssp             TBC-TTCBBC---CGGGTT----TCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSH
T ss_pred             eEC-CCCeEE---EEecCC----cCCCcEe---HHHHHHHHHHHHhCCCC--cccccH
Confidence            999 799999   456764    6999775   99999999999998743  445443

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=7.9e-33  Score=222.74  Aligned_cols=124  Identities=19%  Similarity=0.419  Sum_probs=108.7

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .|.|||++|+++|++++++| +++.+.+++  |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 s~~kRL~~El~~l~~~~~~g-i~~~~~~~~--~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   77 (149)
T d1fzya_           1 SRAKRIMKEIQAVKDDPAAH-ITLEFVSES--DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   77 (149)
T ss_dssp             CHHHHHHHHHHHHHTCGGGC-EEEEESCSS--CSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             CHHHHHHHHHHHHHHCCCCC-EEEEECCCC--chhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCC
Confidence            37899999999999999999 888766544  799999999999999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      ||+..+|.+|+   +++.    ++|+|+++   |.+||.+|++||.+++.  ++|+++.
T Consensus        78 nI~~~~~~~~~---~~~~----~~W~p~~t---i~~il~~i~~ll~~p~~--~~p~n~e  124 (149)
T d1fzya_          78 NISSVTGAICL---DILK----NAWSPVIT---LKSALISLQALLQSPEP--NDPQDAE  124 (149)
T ss_dssp             TBCTTTCCBCC---GGGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSSHH
T ss_pred             cccCCcceeec---hhhc----ccCCCcCC---HHHHHHHHHHHHhCCCC--CChhHHH
Confidence            99966888884   4555    47999776   99999999999998743  5566554

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=9.7e-33  Score=212.29  Aligned_cols=107  Identities=21%  Similarity=0.343  Sum_probs=98.1

Q ss_pred             HHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc-ccceee
Q psy15032         81 RLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRI-NMTCIN  159 (226)
Q Consensus        81 RL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI-~HPNV~  159 (226)
                      ||++|+++|++++++| +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+
T Consensus         2 Rl~kEl~~l~~~~~~g-~~~~~~~~---~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~   77 (109)
T d2fo3a1           2 RIQKELHNFLNNPPIN-CTLDVHPN---NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   77 (109)
T ss_dssp             HHHHHHHHHHHSCCTT-EEEEECTT---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHhCCCCC-EEEEEcCC---cccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC
Confidence            8999999999999998 88887655   699999999999999999999999999999999999999999986 899999


Q ss_pred             CCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy15032        160 NTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIR  202 (226)
Q Consensus       160 ~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~  202 (226)
                       .+|+||++   +|.    +.|+|+++   +++||++|++||+
T Consensus        78 -~~G~iCl~---il~----~~Wsp~~t---i~~vl~~i~~lls  109 (109)
T d2fo3a1          78 -SNGDICLS---LLG----DDYNPSLS---ISGLVLSIISMLS  109 (109)
T ss_dssp             -TTSBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHC
T ss_pred             -CCCeEEee---ccc----CCCCccCC---HHHHHHHHHHHhC
Confidence             89999955   665    47999876   9999999999984

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=7e-33  Score=223.36  Aligned_cols=121  Identities=19%  Similarity=0.340  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .|||++|+++|++++++| +.+.+.++   |++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||
T Consensus         4 ~kRl~kEl~~l~~~~~~g-i~~~p~~~---n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni   79 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPG-IKAEPDES---NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV   79 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTT-EEEEECSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhCCCCC-EEEEECCC---cccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceE
Confidence            489999999999999998 78887665   79999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcc
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~  216 (226)
                      + .+|.||+   +++.+    .|+|+++   +.+||.+|++||.+++.  +.|.+...
T Consensus        80 ~-~~G~icl---~~l~~----~w~p~~~---i~~il~~i~~ll~~p~~--~~p~n~ea  124 (149)
T d1j7db_          80 D-KLGRICL---DILKD----KWSPALQ---IRTVLLSIQALLSAPNP--DDPLANDV  124 (149)
T ss_dssp             C-TTCBBCC---GGGTT----SCCTTSC---HHHHHHHHHHHHHSCCT--TCTTCCSH
T ss_pred             C-CCCcEeh---HHhcC----CCCCCcc---HHHHHHHHHHHHhCCCC--CChhhHHH
Confidence            9 8999994   56664    6888775   99999999999998754  45665543

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=4.2e-33  Score=227.13  Aligned_cols=127  Identities=24%  Similarity=0.418  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      ..||++|+++|++++++| +++.+.+++  |++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~L~kE~~~l~~~~~~g-~~v~~~~~~--dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   78 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDG-FSAGLVDDN--DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI   78 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTT-EEEEESSTT--CTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTB
T ss_pred             ChHHHHHHHHHHhCCCCC-EEEEECCCC--CceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCccc
Confidence            469999999999999999 888876554  69999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhccccc---------CCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        159 NNTSGIVVVIMFWVMIEAK---------ATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~---------~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      + .+|.||   |++|..++         .+.|+|+++   |.+||++|+++|.+|+.  +++.++..+
T Consensus        79 ~-~~G~vc---l~~l~~~~~~~~~~~~~~~~W~p~~~---i~~iL~~i~~ll~~p~~--~~p~n~eaa  137 (161)
T d1pzva_          79 D-KEGNVC---ISILHDPGDDKWGYERPEERWLPVHT---VETILLSVISMLTDPNF--ESPANVDAA  137 (161)
T ss_dssp             C-TTSBBC---CGGGCCC---------CCSSCCTTCC---HHHHHHHHHHHHHSCCC--SSCSCHHHH
T ss_pred             C-CCCccc---hhhcCCcccccccccccccccCcccc---HHHHHHHHHHHHhCCCC--CCccCHHHH
Confidence            9 899999   45776543         245999876   99999999999998753  556665444

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=99.98  E-value=6.4e-33  Score=224.51  Aligned_cols=121  Identities=24%  Similarity=0.380  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      ..|||++|+++|++++++| +.+.+.++   |++.|+++|.||.+|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         4 ~~rRl~~E~~~l~~~~~~g-~~~~p~~~---n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPn   79 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPG-ITAEPHDD---NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN   79 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEEcCC---ccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCc
Confidence            3589999999999999999 88888765   7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |+ .+|.||+   +++..    .|+|+++   |.+||.+|++||.+++-  ++|.++.
T Consensus        80 I~-~~G~icl---~~~~~----~W~p~~~---i~~il~~i~~ll~~P~~--~~p~n~e  124 (152)
T d1jata_          80 ID-RLGRICL---DVLKT----NWSPALQ---IRTVLLSIQALLASPNP--NDPLAND  124 (152)
T ss_dssp             BC-TTCCBCC---GGGTT----TCCTTCC---HHHHHHHHHHHHHSCCT--TSTTCCT
T ss_pred             CC-CCCCeee---ccccc----cCCchhH---HHHHHHHHHHHHcCCCC--CCcccHH
Confidence            99 8999994   46664    6899775   99999999999998743  5565554

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.98  E-value=2.2e-32  Score=222.37  Aligned_cols=125  Identities=23%  Similarity=0.363  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecC--CCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLEN--DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~--~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      +.+||++|+++|+++++.| +.+.+..  +++.|+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++||
T Consensus         3 a~~Rl~~E~~~~~~~~~~g-~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           3 ALSRLAQERKAWRKDHPFG-FVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHSCCTT-CEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             HHHHHHHHHHHHHHCCCCC-eEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            6899999999999999999 6666554  334589999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCC
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQP  214 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~  214 (226)
                      |||+ .+|.||++   +|..  .+.|+|+++   |.+||.+|+++|.+++.  +.|.+.
T Consensus        82 PnV~-~~G~icl~---~l~~--~~~W~p~~t---i~~il~~i~~ll~~p~~--~~p~n~  129 (156)
T d2uyza1          82 PNVY-PSGTVSLS---ILEE--DKDWRPAIT---IKQILLGIQELLNEPNI--QDPAQA  129 (156)
T ss_dssp             TTBC-TTSBBCCG---GGCT--TTTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred             cccc-ccceeeec---ccCc--ccccCCccc---HHHHHHHHHHHhcCCCC--CCccCH
Confidence            9999 89999955   5553  347999765   99999999999988743  455554

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=99.98  E-value=2.4e-32  Score=221.00  Aligned_cols=123  Identities=20%  Similarity=0.309  Sum_probs=109.3

Q ss_pred             ccHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         76 VPRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        76 ~~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ...+|||++||++|++++++| +.+.+.++   |+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||
T Consensus         5 ~~~~kRl~kEl~~l~~~~~~g-i~v~p~~~---dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (151)
T d1zdna1           5 PHIIRLVYKEVTTLTADPPDG-IKVFPNEE---DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   80 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTT-EEEEECSS---CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-eEEEEcCc---chheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCC
Confidence            457899999999999999998 78877665   69999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        156 TCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |||+ .+|.||   ++++.    +.|+|+++   |.+||++|+++|.+++.  +.|.++.
T Consensus        81 PnI~-~~G~ic---~~~l~----~~W~p~~~---l~~il~~i~~~l~~p~~--~~p~n~e  127 (151)
T d1zdna1          81 PNVG-ANGEIC---VNVLK----RDWTAELG---IRHVLLTIKCLLIHPNP--ESALNEE  127 (151)
T ss_dssp             TTBC-TTSBBC---HHHHT----TTCCTTCC---HHHHHHHHHHHHHSCCG--GGCSSHH
T ss_pred             ceec-CCCCcc---ccccc----ccCCcccc---HHHHHHHHHHHHhCCCC--CchhhHH
Confidence            9999 899999   55665    47999775   99999999999998854  4555543

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.97  E-value=1.3e-32  Score=220.56  Aligned_cols=122  Identities=25%  Similarity=0.421  Sum_probs=106.1

Q ss_pred             HHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccceee
Q psy15032         80 FRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCIN  159 (226)
Q Consensus        80 rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV~  159 (226)
                      |||++||++|++++++| +.+.+.+++  |++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 rRl~kEl~~l~~~~~~~-~~~~~~~~~--n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   77 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKN-FRNIQVDEA--NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   77 (144)
T ss_dssp             TTHHHHHTTCSSSCCSS-CEEECSSCS--SSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHhCCCCC-eEEEECCCC--cceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCc
Confidence            89999999999999999 555555443  799999998 99999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        160 NTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       160 ~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                       .+|.||+   ++|..   ++|+|+++   +.+||.+|++||.+++.  +++.++..+
T Consensus        78 -~~G~icl---~~l~~---~~w~p~~~---i~~il~~i~~ll~~p~~--~~p~n~~aa  123 (144)
T d1c4zd_          78 -EKGQVCL---PVISA---ENWKPATK---TDQVIQSLIALVNDPQP--EHPLRADLA  123 (144)
T ss_dssp             -TTCBBCC---TTTSS---SSCCTTCC---HHHHHHHHHHHHHSCCC--SSCSCHHHH
T ss_pred             -cCCcccc---ccccC---CCCCCccc---HHHHHHHHHHHHhCCCC--CCcccHHHH
Confidence             8999994   56764   47999876   99999999999998753  566665443

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.97  E-value=7e-32  Score=217.39  Aligned_cols=121  Identities=21%  Similarity=0.382  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .+||++|+++|++++++| +.+.+.+++  |+..|.+.| ||++|||+||.|+|+|.||++||++||+|+|.|+||||||
T Consensus         2 ~~Rl~kE~~~l~~~~p~g-i~~~~~~~~--~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI   77 (150)
T d1wzva1           2 SMRVVKELEDLQKKPPPY-LRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV   77 (150)
T ss_dssp             HHHHHHHHHHHHHSCCTT-EEEEEECSS--CTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             HHHHHHHHHHHHHCCCCC-EEEEecCCC--ceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceE
Confidence            589999999999999999 776666544  799999865 8999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      + .+|.||   +++|..   ++|+|+++   +.+||.+|+++|.+++.  ++|+++.
T Consensus        78 ~-~~G~ic---l~~l~~---~~W~p~~~---i~~il~~i~~ll~~p~~--~~p~n~e  122 (150)
T d1wzva1          78 D-ENGQIC---LPIISS---ENWKPCTK---TCQVLEALNVLVNRPNI--REPLRMD  122 (150)
T ss_dssp             C-TTCBCC---CGGGCT---TTCCTTCC---HHHHHHHHHHHHHSCCS--SSCSSHH
T ss_pred             C-CCCCcc---cccccc---cCCCchhH---HHHHHHHHHHHHhCCCC--CCchHHH
Confidence            9 899999   456763   57999776   99999999999998743  5555443

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=6.8e-32  Score=218.61  Aligned_cols=125  Identities=25%  Similarity=0.450  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHhHcCC---CCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccc
Q psy15032         78 RNFRLLEELEHGQRGV---GDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRIN  154 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~---~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~  154 (226)
                      +.+||++|+++|+++.   ..+ +.+.+.++   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         5 a~~Rl~kE~~~l~~~~~~~~~~-i~~~~~~~---n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           5 AVQRIKREFKEVLKSEETSKNQ-IKVDLVDE---NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             HHHHHHHHHHHHHHCHHHHTTS-EEEEECSS---SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCc-EEEEcCCC---ChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            6899999999998763   345 88887765   7999999999999999999999999999999999999999999999


Q ss_pred             cceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCcccC
Q psy15032        155 MTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLSG  218 (226)
Q Consensus       155 HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~~  218 (226)
                      ||||++.+|.||++   ++.    +.|+|+++   |.+||.+|+++|.+++.  ++|+++..+.
T Consensus        81 Hpni~~~~g~ic~~---~~~----~~W~p~~~---i~~il~~i~~ll~~p~~--~~p~n~eaa~  132 (154)
T d2bepa1          81 HPNISSVTGAICLD---ILK----DQWAAAMT---LRTVLLSLQALLAAAEP--DDPQDAVVAN  132 (154)
T ss_dssp             BTTBCTTTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCT--TSCSCHHHHH
T ss_pred             CCCeeCCCCccccc---ccc----ccCCCcCC---HHHHHHHHHHHHcCCCC--CCchHHHHHH
Confidence            99999669999954   565    47999775   99999999999999853  5676665443

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.4e-31  Score=218.75  Aligned_cols=122  Identities=27%  Similarity=0.501  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHhHc-------------CCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCC
Q psy15032         78 RNFRLLEELEHGQR-------------GVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEP  144 (226)
Q Consensus        78 r~rRL~kEL~~L~~-------------~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~P  144 (226)
                      +.+||+||+++|++             +...| +++.+.++   |+++|+++|.||.||||+||.|+|+|.||++||++|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~p   77 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHG-VSAQIVGG---DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP   77 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------C-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCC-eEEEecCC---ccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCC
Confidence            56899999999966             23345 88888866   799999999999999999999999999999999999


Q ss_pred             CeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCc
Q psy15032        145 PQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPY  215 (226)
Q Consensus       145 P~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~  215 (226)
                      |+|+|.|++|||||+..+|.||+   +++.+    +|+|+++   |.+||.+|+++|.+|+.  ++|+++-
T Consensus        78 P~V~F~t~i~HPni~~~~G~icl---~~l~~----~W~p~~s---i~~iL~~I~~ll~~P~~--~dp~n~e  136 (161)
T d2f4za1          78 PKMKFVTKIWHPNISSQTGAICL---DILKH----EWSPALT---IRTALLSIQAMLADPVP--TDPQDAE  136 (161)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCC---GGGTT----TCCTTSC---HHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred             cEEEecCCCCCCceECCCCCeec---Ccccc----cCCCccc---HHHHHHHHHHHHhCCCC--CCchhHH
Confidence            99999999999999868999994   46664    6999776   99999999999998754  4566554

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=4.2e-31  Score=214.70  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccce
Q psy15032         78 RNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTC  157 (226)
Q Consensus        78 r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPN  157 (226)
                      +.|||++|+++|++++++| +++.+.++   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+++|||
T Consensus         2 A~kRl~kE~~~l~~~p~~g-~~~~p~~~---n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~   77 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKDPVPY-ICAEPLPS---NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFK   77 (157)
T ss_dssp             HHHHHHHHHHHHHHSCCTT-EEEEEETT---EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBC
T ss_pred             HHHHHHHHHHHHHhCCCCC-EEEEEcCc---ccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccC
Confidence            6899999999999999998 88888765   7999999999999999999999999999999999999999999988888


Q ss_pred             eeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccc
Q psy15032        158 INNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQV  205 (226)
Q Consensus       158 V~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~  205 (226)
                      ++   |++|+..+++.    ++.|+|+++   |.+||++|++||.+++
T Consensus        78 ~~---g~~~~~~l~~~----~~~Wsp~~t---i~~il~~i~~ll~~p~  115 (157)
T d2f4wa1          78 CN---TRLCLSITDFH----PDTWNPAWS---VSTILTGLLSFMVEKG  115 (157)
T ss_dssp             TT---SCBC--------------CCTTCC---HHHHHHHHHHHHHSCC
T ss_pred             CC---CCeeeeecccc----CCCCCccCc---HHHHHHHHHHHccCCC
Confidence            76   77775533333    358999876   9999999999999984

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.96  E-value=7.9e-30  Score=207.39  Aligned_cols=122  Identities=14%  Similarity=0.266  Sum_probs=103.3

Q ss_pred             cHHHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeecccccc
Q psy15032         77 PRNFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMT  156 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HP  156 (226)
                      .+.+||++|+++|+..+  + +.+.+.+++  |++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 ~a~~Rl~kEl~~l~~~~--~-~~i~~~~~~--~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HP   76 (157)
T d1y8xa1           3 AAQLRIQKDINELNLPK--T-CDISFSDPD--DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP   76 (157)
T ss_dssp             HHHHHHHHHHHTCCCCT--T-EEEECSSTT--CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             HHHHHHHHHHHHhCCCC--C-CcEEEcCCC--cceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCc
Confidence            36799999999997543  3 566655544  799999988 89999999999999999999999999999999999999


Q ss_pred             eeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCCCCCCccc
Q psy15032        157 CINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDRPFQPYLS  217 (226)
Q Consensus       157 NV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~~~q~~~~  217 (226)
                      ||+ .+|+||++   ++.    +.|+|+++   |.+||.+|++||.+|+.  ++|+++..+
T Consensus        77 nv~-~~G~ic~~---~~~----~~W~p~~~---i~~il~~I~~ll~~Pn~--~~p~n~eaa  124 (157)
T d1y8xa1          77 NID-LEGNVCLN---ILR----EDWKPVLT---INSIIYGLQYLFLEPNP--EDPLNKEAA  124 (157)
T ss_dssp             TBC-TTCBBCCG---GGT----TTCCTTCC---HHHHHHHHHHHHHSCCC--SSCSCHHHH
T ss_pred             ccc-ccceeeee---ecc----cCCCCCCc---HHHHHHHHHHHHcCCCC--cChHHHHHH
Confidence            999 89999954   565    37999775   99999999999999844  667665443

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.2e-30  Score=207.77  Aligned_cols=122  Identities=18%  Similarity=0.239  Sum_probs=103.8

Q ss_pred             cHHHHHHHHHHHhHcCCC--CCcEEEEecCCCCCCcceEEEEEeC-CCCCCCCCCe-----------EEEEEEeCCCCCC
Q psy15032         77 PRNFRLLEELEHGQRGVG--DGTISWGLENDDDMTLTHWTGMIIG-PPRTPYENRM-----------YSLKIECGPRYPD  142 (226)
Q Consensus        77 ~r~rRL~kEL~~L~~~~~--~g~is~~~~~~d~~nl~~W~~~I~G-p~~TpYeGG~-----------f~~~I~fP~~YP~  142 (226)
                      .+.+||++||++|++++.  .|.+.+.+.++   |+++|++.|.| |++|||+||.           |+++|.||++||+
T Consensus         4 ~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~d---nl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~   80 (162)
T d1zuoa1           4 QASDRLMKELRDIYRSQSYKTGIYSVELIND---SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF   80 (162)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHTTSEEEEEETT---EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEeecCCC---cccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhh
Confidence            478999999999998765  35567776655   79999999999 8999999986           9999999999999


Q ss_pred             CCCeeeeecccccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhccccCCCC
Q psy15032        143 EPPQCRFVSRINMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQVDLTDR  210 (226)
Q Consensus       143 ~PP~V~F~TpI~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~~~~~~~  210 (226)
                      +||+|+|.|++||||+...+|.||+   ++|..   +.|+|+++   |++||++|+++|.+++...+.
T Consensus        81 ~PP~v~f~t~i~hpn~~~~~G~iCl---~iL~~---~~WsP~~t---i~~IL~~i~~ll~~~~p~~~~  139 (162)
T d1zuoa1          81 DPPFVRVVLPVLSGGYVLGGGALCM---ELLTK---QGWSSAYS---IESVIMQINATLVKGKARVQF  139 (162)
T ss_dssp             SCCEEEEEESCEESTTBCGGGBBCC---GGGST---TTCCTTSC---HHHHHHHHHHHHHHTTCEECT
T ss_pred             hcceEEEEEEeeccccccCCceeec---ccccC---CCCCCccc---HHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999995438999994   56753   57999876   999999999999987543333

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.95  E-value=1.5e-28  Score=200.11  Aligned_cols=118  Identities=21%  Similarity=0.308  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccccee
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGPRYPDEPPQCRFVSRINMTCI  158 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~HPNV  158 (226)
                      .|||++|+++|.+++..    +.+ .|   |+++|.++|.||+||||+||.|+++|.||++||.+||+|+|.|++|||||
T Consensus         2 ~rr~~~e~~~l~~~~~~----~~~-~d---~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   73 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK----VYP-SD---TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV   73 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC----EEE-CS---STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHhcCCCc----CCC-CC---CceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCC
Confidence            48999999999987642    333 22   69999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHH-HHHHHhccccCCCCCCCCcc
Q psy15032        159 NNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLI-VCVLIRYQVDLTDRPFQPYL  216 (226)
Q Consensus       159 ~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~-I~sLL~~~~~~~~~~~q~~~  216 (226)
                      ++.+|.||   +++|..    .|+|+++   +.+||+. |+.|+.+++  .++|+++..
T Consensus        74 ~~~~G~vc---l~il~~----~W~p~~~---i~~il~~~i~~ll~~P~--~~~p~N~ea  120 (158)
T d1yf9a1          74 DERSGSVC---LDVINQ----TWTPMYQ---LENIFDVFLPQLLRYPN--PSDPLNVQA  120 (158)
T ss_dssp             CTTTCBBC---HHHHHH----HCCTTCC---THHHHHTHHHHHHHSCC--SSCCSCHHH
T ss_pred             ccCccccc---cccccc----ccCchHh---hhhHHHHHHHHHhcCCC--CCcchhHHH
Confidence            86689999   556764    6898775   9999975 667787764  355665543

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.7e-18  Score=136.45  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=85.1

Q ss_pred             HHHHHHHHhHcCCCCCc--EEEEecCCCCCCcceEEEEEeCCCCCCCCCCeEEE--EEEeCCCCCCCCCeeeeecc----
Q psy15032         81 RLLEELEHGQRGVGDGT--ISWGLENDDDMTLTHWTGMIIGPPRTPYENRMYSL--KIECGPRYPDEPPQCRFVSR----  152 (226)
Q Consensus        81 RL~kEL~~L~~~~~~g~--is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f~~--~I~fP~~YP~~PP~V~F~Tp----  152 (226)
                      +..+|+.++.+.-+...  ......++   +..+|.+.|.|+.+++|+||.|.+  .|.||++||++||.|.|.+.    
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~d---g~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~   94 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFND---GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMT   94 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTT---SCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCE
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCC---CCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCcc
Confidence            55567777665433221  23333333   478999999999999999999998  56689999999999988754    


Q ss_pred             -cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        153 -INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       153 -I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                       ++||||+ .+|+||   +++|++|    |.|.+   ++.+++..++++|.+.
T Consensus        95 ~~~h~~V~-~~G~V~---lp~L~~W----~~~~s---~L~~ll~~L~~~f~~e  136 (141)
T d1s1qa_          95 IKTGKHVD-ANGKIY---LPYLHEW----KHPQS---DLLGLIQVMIVVFGDE  136 (141)
T ss_dssp             ECCSSSBC-TTCBBC---CHHHHTC----CTTTC---CHHHHHHHHHHHHHHS
T ss_pred             ccCCCeEC-CCCCCc---chhhcCC----Ccccc---cHHHHHHHHHHHhCCC
Confidence             6899999 899999   6688864    44433   5999999999999975

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.3e-15  Score=122.26  Aligned_cols=112  Identities=12%  Similarity=0.001  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhHcCCCCCcEE--EEecCCCCCCcceEEEEEeCCCCCCCCCCe---EEEEEEeCCCCCCCCCeeeeecc-
Q psy15032         79 NFRLLEELEHGQRGVGDGTIS--WGLENDDDMTLTHWTGMIIGPPRTPYENRM---YSLKIECGPRYPDEPPQCRFVSR-  152 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is--~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~---f~~~I~fP~~YP~~PP~V~F~Tp-  152 (226)
                      .+|+.+|+..+.++-+.....  ....++   ....+.+.+.|.-..+|+||.   +.+.|.||++||+.||.|+|.++ 
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~d---g~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~   97 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSD---GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN   97 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTT---SCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTT
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCC---CCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCc
Confidence            457778877776543322111  122223   256677888999999999996   67888899999999999999875 


Q ss_pred             ----------cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        153 ----------INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       153 ----------I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                                ++||||| .+|+||   +++|.+|    |.|..   ++.++|.+|+++|.++
T Consensus        98 ~~~~~~~~~i~~hp~Vd-~~G~V~---lp~L~~W----~~~~s---~L~~ll~~l~~~f~~~  148 (152)
T d1uzxa_          98 FDMNTISSSLPIQEYID-SNGWIA---LPILHCW----DPAAM---NLIMVVQELMSLLHEP  148 (152)
T ss_dssp             CCSCC----CGGGGGBC-TTSCBC---CHHHHSC----CTTTC---CHHHHHHHHHTGGGSC
T ss_pred             ccccCCCcccccCCCCC-CCCcEe---hHHhcCC----CCccC---cHHHHHHHHHHHhcCC
Confidence                      5799999 899999   6788864    55544   5999999999999876

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0033  Score=48.48  Aligned_cols=102  Identities=13%  Similarity=0.079  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhHcC------CCCCcEEEEecCCCCCCcceEEEEEeCCCCCCCCCCeE--EEEEEeCCCCCCCCCeeee
Q psy15032         78 RNFRLLEELEHGQRG------VGDGTISWGLENDDDMTLTHWTGMIIGPPRTPYENRMY--SLKIECGPRYPDEPPQCRF  149 (226)
Q Consensus        78 r~rRL~kEL~~L~~~------~~~g~is~~~~~~d~~nl~~W~~~I~Gp~~TpYeGG~f--~~~I~fP~~YP~~PP~V~F  149 (226)
                      ...||.+|+..|-+.      .....+.+....++    +.|.+.---    .+.--.|  .+++.+|..||..||.|..
T Consensus        26 W~~RLKEEy~aLI~Yv~nNK~~dndWF~lesn~~G----T~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~pEi~l   97 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEG----TRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAPEIAV   97 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTS----SEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEeccCCCC----CeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCcceec
Confidence            678999999987541      11223555543332    455432210    1222234  4556789999999999865


Q ss_pred             ecc-cccceeeCCCCeEEccchhhcccccCCCCCCCCCCCCHHHHH
Q psy15032        150 VSR-INMTCINNTSGIVVVIMFWVMIEAKATHYPVDLKTGTPDQVY  194 (226)
Q Consensus       150 ~Tp-I~HPNV~~~~G~ICl~~LsiL~~w~~~~W~Pa~s~~tI~~VL  194 (226)
                      -.= ---.-.| .+|+|||+ ..+..-|-  ...|...   |...+
T Consensus        98 PeLdGKTaKMY-RGGkIClt-~HFkPLWa--rN~PkfG---IaHal  136 (162)
T d2in1a1          98 PELDGKTAKMY-RGGKICLT-DHFKPLWA--RNVPKFG---LAHLM  136 (162)
T ss_dssp             GGGSSSCSSSC-GGGBCCCC-TTSHHHHH--TTTTSCC---HHHHH
T ss_pred             cccCCchhhhh-cCceeecc-ccchhhhh--hcCCchh---HHHHH
Confidence            210 0011234 68999987 45555564  2455554   66543

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.085  Score=37.66  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=39.5

Q ss_pred             HHHHHHHhHcCCCCCcEEEEecCCCCCCcceEEE--EEeCCC--CCCCCCCeEEEEEEeCCCCCCCCCeeeeeccc
Q psy15032         82 LLEELEHGQRGVGDGTISWGLENDDDMTLTHWTG--MIIGPP--RTPYENRMYSLKIECGPRYPDEPPQCRFVSRI  153 (226)
Q Consensus        82 L~kEL~~L~~~~~~g~is~~~~~~d~~nl~~W~~--~I~Gp~--~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI  153 (226)
                      +..|+.-|+.-=++. +...-..+   +...+.+  .+....  +..=......+.+.+|++||..+|.+.+.+.-
T Consensus         6 ~~~EleaL~SIY~d~-~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~   77 (115)
T d2daya1           6 LPSEVEVLESIYLDE-LQVIKGNG---RTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR   77 (115)
T ss_dssp             HHHHHHHHHHHSTTT-EEEECCTT---SSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE
T ss_pred             HHHHHHHHHhHCCCc-eEEeccCC---CCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccC
Confidence            567888888744444 44332222   2333333  333211  11112246788999999999999999877643

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.34  E-value=1.8  Score=31.11  Aligned_cols=114  Identities=13%  Similarity=0.043  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhHcCCCCCcEEEEecCCCCCCcc--eEEEEEeCCC-CCCCCCCeEEEEEEeCCCCCCCCCeeeeeccccc
Q psy15032         79 NFRLLEELEHGQRGVGDGTISWGLENDDDMTLT--HWTGMIIGPP-RTPYENRMYSLKIECGPRYPDEPPQCRFVSRINM  155 (226)
Q Consensus        79 ~rRL~kEL~~L~~~~~~g~is~~~~~~d~~nl~--~W~~~I~Gp~-~TpYeGG~f~~~I~fP~~YP~~PP~V~F~TpI~H  155 (226)
                      ..+-..|+..|+.-=++. +...........-.  ...+.+.... +.......+.+.|.||++||..+|.+.+...-.-
T Consensus        12 ~E~Q~~EleaL~SIY~dd-~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~~~l   90 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSD-FQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAKGL   90 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSS-EEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHHcCCc-eEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecCCCC
Confidence            345567888887533333 33221111100111  2233343211 2233445688999999999999999988654322


Q ss_pred             ceeeCCCCeEEccchhhccc-ccCCCCCCCCCCCCHHHHHHHHHHHHhcc
Q psy15032        156 TCINNTSGIVVVIMFWVMIE-AKATHYPVDLKTGTPDQVYLIVCVLIRYQ  204 (226)
Q Consensus       156 PNV~~~~G~ICl~~LsiL~~-w~~~~W~Pa~s~~tI~~VL~~I~sLL~~~  204 (226)
                      +...  -..++    ..|.. |. + ...   .--|.+++..++..|.+.
T Consensus        91 ~~~~--~~~L~----~~l~~~~~-e-~~G---~~mif~lv~~lqe~L~e~  129 (137)
T d1ukxa_          91 SNES--VNLLK----SHLEELAK-K-QCG---EVMIFELAHHVQSFLSEH  129 (137)
T ss_dssp             SSSH--HHHHH----HHHHHHHH-H-HTT---SCCHHHHHHHHHHHHHHH
T ss_pred             CHHH--HHHHH----HHHHHHHH-H-cCC---CEeHHHHHHHHHHHHHHh
Confidence            2111  01121    12221 11 1 111   113899999999988865

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.55  E-value=0.47  Score=34.27  Aligned_cols=26  Identities=27%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CCeEEEEEEeCCCCCCCCCeeeeecc
Q psy15032        127 NRMYSLKIECGPRYPDEPPQCRFVSR  152 (226)
Q Consensus       127 GG~f~~~I~fP~~YP~~PP~V~F~Tp  152 (226)
                      .....+.+.+|.+||..+|.|...+.
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~~   90 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRSV   90 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             CceEEEEEEecCcCCCcCCceeccCC
Confidence            34688999999999999999987654