Psyllid ID: psy15047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MDTEKYYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCSSDQDGQEEGFVTSY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccccccHcccccccccccccccccccccccccccccccccccccccccccHccccHHccccccccccccEcccHHHcccccccccccccHHcHEEEcccccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mdtekyyhthypwdhnekmdkhwaslrpateerysskptdtwnangryshfyhsrenlFKTELcrlhdetgvckfgtgckfahgahelrviprhpryrtklcqsyhqdgfcpygqrcyfiheeksvssrgtsvtssvssrgsgkislsscssdqdgqeegfvtsy
Flexible Loop (DISEMBL)
mdtekyyhthypwdhnekmDKHWASLRPATeerysskptdtwnaNGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEksvssrgtsvtssvssrgsgkislsscssdqdgqeegfvtsy
Low Complexity Region (SEG)
MDTEKYYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEksvssrgtsvtssvssrgsgkislsscssDQDGQEEGFVTSY
Disordered region (IsUnstruct)
*****YYHTHYPWDH*************************TWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH********************************************
Disordered Region (DISOPRED)
*****YY******************************************************ELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFI*********************************************
Disordered Region (DISEMBL)
MDTEKYYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK*****************************************
Disordered Region (DISPRO)
*********************************************************LFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE************************************G*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTEKYYHTHYPWDHNEKMDKHWASLRPATEERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRGTSVTSSVSSRGSGKISLSSCSSDQDGQEEGFVTSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q7ZXW9	363	Zinc finger protein 36, C	N/A	N/A	0.351	0.159	0.619	8e-21
P17431	338	Zinc finger protein 36, C	no	N/A	0.466	0.227	0.531	9e-21
P23950	338	Zinc finger protein 36, C	yes	N/A	0.466	0.227	0.531	9e-21
Q805B4	364	Zinc finger protein 36, C	N/A	N/A	0.351	0.159	0.619	1e-20
Q07352	338	Zinc finger protein 36, C	yes	N/A	0.333	0.162	0.590	1e-20
P47974	494	Zinc finger protein 36, C	no	N/A	0.448	0.149	0.558	2e-20
P23949	367	Zinc finger protein 36, C	no	N/A	0.351	0.158	0.619	4e-20
A4IIN5	333	Zinc finger protein 36, C	no	N/A	0.351	0.174	0.603	5e-20
P47980	436	Protein TIS11 OS=Drosophi	yes	N/A	0.351	0.133	0.587	3e-19
P53781	324	Tristetraprolin OS=Bos ta	no	N/A	0.509	0.259	0.420	8e-17

>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis GN=zfp36l2-A PE=2 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 52/63 (82%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 191

Query: 119 FIH 121
           FIH
Sbjct: 192 FIH 194

Required for tubulogenesis during pronephros development.
Xenopus laevis (taxid: 8355)

>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus GN=Zfp36l1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query: 119 FIH--EEKSVSSRGTSVTS 135
           FIH  EE+   + G  +++
Sbjct: 175 FIHNAEERRALAGGRDLSA 193

Probable regulatory protein involved in regulating the response to growth factors.

Rattus norvegicus (taxid: 10116)

>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query: 119 FIH--EEKSVSSRGTSVTS 135
           FIH  EE+   + G  +++
Sbjct: 175 FIHNAEERRALAGGRDLSA 193

Probable regulatory protein involved in regulating the response to growth factors.

Mus musculus (taxid: 10090)

>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis GN=zfp36l2-B PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 193

Query: 119 FIH 121
           FIH
Sbjct: 194 FIH 196

Required for tubulogenesis during pronephros development.

Xenopus laevis (taxid: 8355)

>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 52/66 (78%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query: 119 FIHEEK 124
           FIH  +
Sbjct: 175 FIHNAE 180

Probable regulatory protein involved in regulating the response to growth factors.

Homo sapiens (taxid: 9606)

>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2 PE=1 SV=3

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 213

Query: 119 FIH---EEKSVSSRGTS 132
           FIH   E +   S G S
Sbjct: 214 FIHNADERRPAPSGGAS 230

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Homo sapiens (taxid: 9606)

>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 52/63 (82%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 186

Query: 119 FIH 121
           FIH
Sbjct: 187 FIH 189

Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.

Mus musculus (taxid: 10090)

>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis GN=zfp36l2 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 161

Query: 119 FIH 121
            IH
Sbjct: 162 LIH 164

Required for tubulogenesis during pronephros development.

Xenopus tropicalis (taxid: 8364)

>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 51/63 (80%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E G CK+G  C+FAHG+HELR + RHP+Y+T+ C+++H  GFCPYG RC+
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCH 195

Query: 119 FIH 121
           F+H
Sbjct: 196 FVH 198

Drosophila melanogaster (taxid: 7227)

>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%)

Query: 34  YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR 93
            + +P+  W+ +        +  + +KTELCR   E+G C++G  C+FAHG  ELR   R
Sbjct: 77  LAPRPSSDWSPSPTSPTATPTTSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQASR 136

Query: 94  HPRYRTKLCQSYHQDGFCPYGQRCYFIH 121
           HP+Y+T+LC  ++  G CPYG RC+FIH
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
72010393	386	PREDICTED: zinc finger protein 36, C3H1	0.606	0.259	0.475	6e-22
427781319	368	hypothetical protein [Rhipicephalus pulc	0.612	0.274	0.445	4e-21
300708890	309	hypothetical protein NCER_100276 [Nosema	0.606	0.323	0.445	2e-20
449688559	332	PREDICTED: zinc finger protein 36, C3H1	0.781	0.388	0.425	2e-20
307947822	503	Tis11-like protein [Ilyanassa obsoleta]	0.393	0.129	0.646	3e-20
449015411	647	unknown zinc finger protein [Cyanidiosch	0.424	0.108	0.571	3e-20
118344116	380	zinc finger protein [Ciona intestinalis]	0.684	0.297	0.418	3e-20
2353340	401	Tis11 family protein [Crassostrea virgin	0.563	0.231	0.473	3e-20
118404606	345	ZFP36 ring finger protein-like 1 [Xenopu	0.503	0.240	0.515	3e-20
312383024	572	hypothetical protein AND_04029 [Anophele	0.424	0.122	0.533	5e-20

>gi|72010393|ref|XP_782811.1| PREDICTED: zinc finger protein 36, C3H1 type-like 2-A-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 73/103 (70%), Gaps = 3/103 (2%)

Query: 31  EERYSSKPTD-TWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR 89
           +E  ++KP D   + + R +   +   + +KTELCR ++E G CK+G  C+FAHG HELR
Sbjct: 89  KENLNNKPRDRALSESDRNNQTRNQNSSRYKTELCRPYEENGTCKYGDKCQFAHGIHELR 148

Query: 90  VIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH--EEKSVSSRG 130
           V+ RHP+Y+T+LC+++H  GFCPYG RC+FIH  +E+ +SS G
Sbjct: 149 VLSRHPKYKTELCRTFHTVGFCPYGPRCHFIHNPDERKLSSPG 191

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|427781319|gb|JAA56111.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 9/110 (8%)

Query: 15  HNEKMDKHWASLR--PATEERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGV 72
           ++E +D+   SL   P T    ++ PT   ++  + S  Y       KTELCR  +E+G 
Sbjct: 115 YSEPVDRSRPSLAGGPPTSPTCATTPTSPPSSVAQNSSRY-------KTELCRPFEESGT 167

Query: 73  CKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHE 122
           CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+FIH 
Sbjct: 168 CKYGDKCQFAHGGHELRTLARHPKYKTELCRTFHTAGFCPYGPRCHFIHN 217

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|300708890|ref|XP_002996616.1| hypothetical protein NCER_100276 [Nosema ceranae BRL01] gi|239605931|gb|EEQ82945.1| hypothetical protein NCER_100276 [Nosema ceranae BRL01]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 38  PTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRY 97
           P +   A     +FY+ +  L+KTE+CR H ETG CK+ + C+FAH  +ELR++ RHPRY
Sbjct: 27  PNNKSKAVSSKEYFYNKKIQLYKTEICRSHSETGYCKYESKCQFAHDVNELRIVNRHPRY 86

Query: 98  RTKLCQSYHQDGFCPYGQRCYFIH-EEKSVSSRGTSVTSSV 137
           +T+ C+++ ++G CPYG+RC FIH + KS+    +S+ SS+
Sbjct: 87  KTETCRTFWEEGSCPYGKRCCFIHIKNKSLEKERSSLESSL 127

Source: Nosema ceranae BRL01

Species: Nosema ceranae

Genus: Nosema

Family: Nosematidae

Phylum: Microsporidia

Superkingdom: Eukaryota

>gi|449688559|ref|XP_002159721.2| PREDICTED: zinc finger protein 36, C3H1 type-like 1-like [Hydra magnipapillata]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 5/134 (3%)

Query: 11  YPWDHNEKMDKHWASLRPATEERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDET 70
           YP   + K DK   ++ P  E   S+   +  +A  R  +  +S    +KTELCR  +E 
Sbjct: 73  YPMPSSPK-DKFSGNVSPFRERAQSASFQEELDAQQRKRNSTNSSR--YKTELCRPFEEN 129

Query: 71  GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIH--EEKSVSS 128
           G CK+G  C+FAHG HELR + RHP+Y+T+ C++YH  GFCPYG RC+FIH  EEK ++ 
Sbjct: 130 GTCKYGDKCQFAHGFHELRGLNRHPKYKTEFCRTYHTIGFCPYGPRCHFIHNDEEKKLAL 189

Query: 129 RGTSVTSSVSSRGS 142
                + S+SS  S
Sbjct: 190 TSLGRSCSISSMDS 203

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|307947822|gb|ABV54790.2| Tis11-like protein [Ilyanassa obsoleta]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E+G CK+G  C+FAHGAHELR + RHP+Y+T+LC++YH  GFCPYG RC+
Sbjct: 147 YKTELCRPFEESGHCKYGDKCQFAHGAHELRNLSRHPKYKTELCRTYHSVGFCPYGPRCH 206

Query: 119 FIHEE 123
           FIH E
Sbjct: 207 FIHNE 211

Source: Ilyanassa obsoleta

Species: Ilyanassa obsoleta

Genus: Ilyanassa

Family: Nassariidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|449015411|dbj|BAM78813.1| unknown zinc finger protein [Cyanidioschyzon merolae strain 10D]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 56/70 (80%)

Query: 53  HSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCP 112
           H+  +L+KTELCR   ETG C++G+ C+FAHG  ELR +PRHP+Y+TK+C+++ ++G CP
Sbjct: 234 HAVNDLYKTELCRSWIETGACRYGSKCQFAHGQEELRPLPRHPKYKTKVCKNFAENGSCP 293

Query: 113 YGQRCYFIHE 122
           YG RC FIHE
Sbjct: 294 YGSRCRFIHE 303

Source: Cyanidioschyzon merolae strain 10D

Species: Cyanidioschyzon merolae

Genus: Cyanidioschyzon

Family: Cyanidiaceae

Order: Cyanidiales

Class: Bangiophyceae

Superkingdom: Eukaryota

>gi|118344116|ref|NP_001071879.1| zinc finger protein [Ciona intestinalis] gi|70571730|dbj|BAE06810.1| zinc finger protein [Ciona intestinalis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 4/117 (3%)

Query: 13  WDHNEKMDKHWASLRPATEERYSSKPTDTWNANGRYSHFYHSRENL---FKTELCRLHDE 69
           ++ N  +  H ASL    EE++ S+     ++          +++    +KTELCR  +E
Sbjct: 83  YNENALLASH-ASLETVNEEKFRSRAFSEGSSVLSQESMQDQQQSATSRYKTELCRPFEE 141

Query: 70  TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV 126
            G CK+G  C+FAHG HELR + RHP+Y+T+LC++YH  GFCPYG RC+FIH ++ V
Sbjct: 142 NGKCKYGDKCQFAHGKHELRRMVRHPKYKTELCRTYHTSGFCPYGPRCHFIHNQEDV 198

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|2353340|gb|AAB69448.1| Tis11 family protein [Crassostrea virginica]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 65/93 (69%)

Query: 32  ERYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVI 91
           +R  S+P  T ++        +   + +KTELCR  +E+G CK+G  C+FAHGAHELR +
Sbjct: 89  DRSMSEPGATLSSAASRQQNQNVNSSRYKTELCRPFEESGHCKYGDKCQFAHGAHELRNL 148

Query: 92  PRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
            RHP+Y+T+LC+++H  GFCPYG RC+FIH ++
Sbjct: 149 NRHPKYKTELCRTFHTIGFCPYGPRCHFIHNDE 181

Source: Crassostrea virginica

Species: Crassostrea virginica

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|118404606|ref|NP_001072758.1| ZFP36 ring finger protein-like 1 [Xenopus (Silurana) tropicalis] gi|116487406|gb|AAI25787.1| hypothetical protein MGC147385 [Xenopus (Silurana) tropicalis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 12/95 (12%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 116 YKTELCRPFEENGSCKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 175

Query: 119 FIH--EEKSVSSRGTSVTSSVSSRGSGKISLSSCS 151
           FIH  EE+ +          VS R   + SLSS S
Sbjct: 176 FIHNAEERRL----------VSGRDQAQFSLSSSS 200

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312383024|gb|EFR28263.1| hypothetical protein AND_04029 [Anopheles darlingi]

 Score =  102 bits (254), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 56/75 (74%)

Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR ++E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 276 YKTELCRPYEEAGECKYGDKCQFAHGMHELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 335

Query: 119 FIHEEKSVSSRGTSV 133
           F+H  +   +   SV
Sbjct: 336 FVHNAEEARNHNRSV 350

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
UNIPROTKB|Q7ZXW9	363	zfp36l2-A "Zinc finger protein	0.381	0.173	0.619	1.5e-21
UNIPROTKB|A7MB98	338	ZFP36L1 "Uncharacterized prote	0.381	0.186	0.619	1.5e-21
UNIPROTKB|E2R2W0	338	ZFP36L1 "Uncharacterized prote	0.381	0.186	0.619	1.5e-21
UNIPROTKB|G3V2D5	176	ZFP36L1 "Zinc finger protein 3	0.381	0.357	0.619	1.5e-21
UNIPROTKB|G3V2P5	207	ZFP36L1 "Zinc finger protein 3	0.381	0.304	0.619	1.5e-21
UNIPROTKB|Q07352	338	ZFP36L1 "Zinc finger protein 3	0.381	0.186	0.619	1.5e-21
UNIPROTKB|I3LB77	338	ZFP36L1 "Uncharacterized prote	0.381	0.186	0.619	1.5e-21
MGI|MGI:107946	338	Zfp36l1 "zinc finger protein 3	0.381	0.186	0.619	1.5e-21
MGI|MGI:107945	367	Zfp36l2 "zinc finger protein 3	0.381	0.171	0.619	1.5e-21
RGD|62009	338	Zfp36l1 "zinc finger protein 3	0.381	0.186	0.619	1.5e-21

UNIPROTKB|Q7ZXW9 zfp36l2-A "Zinc finger protein 36, C3H1 type-like 2-A" [Xenopus laevis (taxid:8355)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 52/63 (82%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   132 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 191

Query:   119 FIH 121
             FIH
Sbjct:   192 FIH 194

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043488 "regulation of mRNA stability" evidence=ISS

GO:0048793 "pronephros development" evidence=ISS

UNIPROTKB|A7MB98 ZFP36L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query:   119 FIH 121
             FIH
Sbjct:   175 FIH 177

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R2W0 ZFP36L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query:   119 FIH 121
             FIH
Sbjct:   175 FIH 177

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3V2D5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:    93 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 152

Query:   119 FIH 121
             FIH
Sbjct:   153 FIH 155

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

UNIPROTKB|G3V2P5 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   121 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 180

Query:   119 FIH 121
             FIH
Sbjct:   181 FIH 183

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q07352 ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query:   119 FIH 121
             FIH
Sbjct:   175 FIH 177

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IDA

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

UNIPROTKB|I3LB77 ZFP36L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query:   119 FIH 121
             FIH
Sbjct:   175 FIH 177

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:107946 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Mus musculus (taxid:10090)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query:   119 FIH 121
             FIH
Sbjct:   175 FIH 177

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0001570 "vasculogenesis" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0043488 "regulation of mRNA stability" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:107945 Zfp36l2 "zinc finger protein 36, C3H type-like 2" [Mus musculus (taxid:10090)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 52/63 (82%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   127 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 186

Query:   119 FIH 121
             FIH
Sbjct:   187 FIH 189

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IGI

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

RGD|62009 Zfp36l1 "zinc finger protein 36, C3H type-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query:    59 FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
             +KTELCR  +E G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct:   115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174

Query:   119 FIH 121
             FIH
Sbjct:   175 FIH 177

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IEA;ISO

GO:0001570 "vasculogenesis" evidence=IEA;ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=IMP

GO:0033077 "T cell differentiation in thymus" evidence=IEA;ISO

GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23950	TISB_MOUSE	No assigned EC number	0.5316	0.4666	0.2278	yes	N/A
Q9C9N3	C3H14_ARATH	No assigned EC number	0.5074	0.4060	0.2161	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	3e-11
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	3e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-05
COG5063	351	COG5063, CTH1, CCCH-type Zn-finger protein [Genera	2e-04
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-04

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 46  GRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSY 105
            R S+       L+KTE+ R   E   C++     FAH      +   HP+Y+T+  + +
Sbjct: 101 PRGSNANK-PYGLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVF 159

Query: 106 HQDGFCPYGQRCYFIH 121
              G+ PY +RC FI 
Sbjct: 160 INPGYVPYSKRCCFIS 175

Length = 351

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 54  SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPR--YRTKLCQSYHQDGFC 111
            ++  F+TE C   +++G C +G  C F HG      +       Y    C++  + G  
Sbjct: 267 KKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAF 326

Query: 112 PYGQRCYFIHEEK 124
           P G       ++K
Sbjct: 327 PSGGAVCKSFDKK 339

Length = 351

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 59 FKTELCRLHDETGVCKFGTGCKFAHG 84
          +KTELCR    TG CK+G  CKFAHG
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function prediction only]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 47  RYSHFYHSRENLFKT--ELCRLHDETGVCKF---GTGCKFA---HGAHELRVIPRHPRYR 98
                    + L+KT  ELC      G C +   G  C+FA   HG +EL+   +   +R
Sbjct: 214 LIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFR 273

Query: 99  TKLCQSYHQDGFCPYGQRCYFIH 121
           T+ C ++ + G+CPYG RC F H
Sbjct: 274 TEPCINWEKSGYCPYGLRCCFKH 296

Length = 351

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 97  YRTKLCQSYHQDGFCPYGQRCYFIH 121
           Y+T+LC+ + + G C YG RC F H
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAH 25

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG1677|consensus	332		99.68
KOG1595|consensus	528		99.29
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.27
KOG1677|consensus	332		98.97
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.94
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.78
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.6
KOG1040|consensus	325		98.47
smart00356	27	ZnF_C3H1 zinc finger.	98.29
KOG2333|consensus	614		98.18
KOG2494|consensus	331		98.04
KOG1040|consensus	325		98.02
smart00356	27	ZnF_C3H1 zinc finger.	98.02
KOG1763|consensus	343		97.93
KOG1595|consensus	528		97.64
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.56
KOG1492|consensus	377		97.53
KOG1492|consensus	377		97.46
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.29
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.28
KOG2185|consensus	486		96.86
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.19
KOG2185|consensus	486		96.11
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.85
COG5152	259	Uncharacterized conserved protein, contains RING a	95.53
COG5152	259	Uncharacterized conserved protein, contains RING a	94.47
KOG2333|consensus	614		94.44
KOG2494|consensus	331		92.58
KOG2202|consensus	260		92.12
KOG1813|consensus	313		91.84
KOG4791|consensus	667		91.62
KOG1039|consensus	344		91.07
KOG1039|consensus	344		90.33
KOG3702|consensus	681		89.5
KOG1813|consensus	313		88.97
KOG4791|consensus	667		88.88
KOG1763|consensus	343		88.08
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	82.97
KOG3702|consensus	681		81.87

>KOG1677|consensus

Probab=99.68  E-value=3.7e-17  Score=139.50  Aligned_cols=96  Identities=39%  Similarity=0.843  Sum_probs=81.2

Q ss_pred             cCCCCCCCCCCCCCCCCCC-------------CcCccCCccccccccccCCCCCC-CCCCccccCCcccc------cccC
Q psy15047         34 YSSKPTDTWNANGRYSHFY-------------HSRENLFKTELCRLHDETGVCKF-GTGCKFAHGAHELR------VIPR   93 (165)
Q Consensus        34 ~~~~~~c~~~~~~~~~h~~-------------~~~~~~~KT~lC~~y~~~G~C~~-Gd~C~FaH~~~elr------~~~~   93 (165)
                      +...+.|.++..|.+.|..             ......+||.+|.+|...|.|+| |++|+|+|+.++++      ....
T Consensus        92 ~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~  171 (332)
T KOG1677|consen   92 YLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGN  171 (332)
T ss_pred             ccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcC
Confidence            4556677777777776664             23456799999999999999999 99999999999999      4456


Q ss_pred             CCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy15047         94 HPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSR  129 (165)
Q Consensus        94 ~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~  129 (165)
                      +++|+|++|..|+++|.|+||.+|+|+|+..+....
T Consensus       172 ~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  172 PPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS  207 (332)
T ss_pred             CCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence            789999999999999999999999999998866554

>KOG1595|consensus

Probab=99.29  E-value=2.2e-12  Score=115.85  Aligned_cols=91  Identities=26%  Similarity=0.594  Sum_probs=73.6

Q ss_pred             CCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCcc
Q psy15047         40 DTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF  119 (165)
Q Consensus        40 c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F  119 (165)
                      |||.+.+..++.+..+...|..++|+-|. +|.|..||.|.|+|++-|  .+.++.+|+|.+|+.   .|.|+. .-|.|
T Consensus       215 CPf~HpgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfE--cwLHPa~YRT~~CkD---g~~C~R-rvCfF  287 (528)
T KOG1595|consen  215 CPFAHPGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFE--CWLHPARYRTRKCKD---GGYCPR-RVCFF  287 (528)
T ss_pred             CCccCCCcccccCCcccccccCccCcccc-cCCCCCCCccccccceeh--hhcCHHHhccccccC---CCCCcc-ceEee
Confidence            45555555555666677789999999996 799999999999999977  455667899999995   699999 88999


Q ss_pred             CCCCCCCCCCCCCccccc
Q psy15047        120 IHEEKSVSSRGTSVTSSV  137 (165)
Q Consensus       120 ~H~~~~~~~~~~~~~s~~  137 (165)
                      ||.+++|+.......+.+
T Consensus       288 AH~~eqLR~l~~s~~s~~  305 (528)
T KOG1595|consen  288 AHSPEQLRPLPPSTGSDR  305 (528)
T ss_pred             ecChHHhcccCCCCCCCC
Confidence            999999987776544433

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.27  E-value=4.7e-12  Score=107.41  Aligned_cols=96  Identities=22%  Similarity=0.451  Sum_probs=83.8

Q ss_pred             cccCCCCCCCC---CCCCCCC---CCCCc-----CccCCccccccccccCCCCCCCCCCccccCCcccccccCCC--Ccc
Q psy15047         32 ERYSSKPTDTW---NANGRYS---HFYHS-----RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHP--RYR   98 (165)
Q Consensus        32 ~~~~~~~~c~~---~~~~~~~---h~~~~-----~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~--~~k   98 (165)
                      +.+...|+|++   |..|+|+   |+...     +.+.|+|++|..|...|.|+||.+|.|+|+..+...+..++  .|+
T Consensus       234 ~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~  313 (351)
T COG5063         234 ESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYL  313 (351)
T ss_pred             hccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhcccccccccccc
Confidence            45788999999   9999998   88753     55679999999999999999999999999998877666565  788


Q ss_pred             ccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         99 TKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        99 t~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      ..+|+.++..|.|++|.+|.|.|+..-+.
T Consensus       314 ~~~crt~~~~g~~p~g~~~c~~~dkkn~~  342 (351)
T COG5063         314 DGPCRTRAKGGAFPSGGAVCKSFDKKNLD  342 (351)
T ss_pred             ccccccccccCccCCCCchhhccccchhh
Confidence            89999999999999999999999876553

>KOG1677|consensus

Probab=98.97  E-value=4.2e-10  Score=96.12  Aligned_cols=83  Identities=25%  Similarity=0.508  Sum_probs=63.3

Q ss_pred             cCCCCcch-hhhhhh--------hccCcccc--cccCCCCCCCC-CCCCCCCCCCCc-----------CccCCccccccc
Q psy15047         10 HYPWDHNE-KMDKHW--------ASLRPATE--ERYSSKPTDTW-NANGRYSHFYHS-----------RENLFKTELCRL   66 (165)
Q Consensus        10 ~~p~~~n~-~~~~~~--------~~~~~~~~--~~~~~~~~c~~-~~~~~~~h~~~~-----------~~~~~KT~lC~~   66 (165)
                      -+++++.. .+++..        ...+++++  ..+...++|+| +.+|+|+|..+.           .+.+|||++|.+
T Consensus       103 ~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~  182 (332)
T KOG1677|consen  103 SCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPK  182 (332)
T ss_pred             CCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCc
Confidence            45667776 444433        22333444  34789999999 999999998763           245799999999


Q ss_pred             cccCCCCCCCCCCccccCCccccccc
Q psy15047         67 HDETGVCKFGTGCKFAHGAHELRVIP   92 (165)
Q Consensus        67 y~~~G~C~~Gd~C~FaH~~~elr~~~   92 (165)
                      |++.|.|+||.+|+|+|+..+.+...
T Consensus       183 f~~tG~C~yG~rC~F~H~~~~~~~~~  208 (332)
T KOG1677|consen  183 FQKTGLCKYGSRCRFIHGEPEDRASN  208 (332)
T ss_pred             cccCCCCCCCCcCeecCCCccccccc
Confidence            99899999999999999998876644

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.94  E-value=5e-10  Score=95.22  Aligned_cols=76  Identities=38%  Similarity=0.871  Sum_probs=66.8

Q ss_pred             ccCCcc--ccccccccCCCCCC---CCCCccc---cCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         56 ENLFKT--ELCRLHDETGVCKF---GTGCKFA---HGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        56 ~~~~KT--~lC~~y~~~G~C~~---Gd~C~Fa---H~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      ...+|+  .+|.-|-..|.|++   |+.|+|+   ||..++........++|++|..|...|+|+||.+|.|+|+.....
T Consensus       223 ~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i  302 (351)
T COG5063         223 KPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI  302 (351)
T ss_pred             chhhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhc
Confidence            345788  99999988999999   9999999   999998777666779999999999999999999999999998765


Q ss_pred             CCCC
Q psy15047        128 SRGT  131 (165)
Q Consensus       128 ~~~~  131 (165)
                      ....
T Consensus       303 e~~~  306 (351)
T COG5063         303 EMYE  306 (351)
T ss_pred             cccc
Confidence            5443

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.78  E-value=1e-09  Score=61.88  Aligned_cols=26  Identities=58%  Similarity=1.283  Sum_probs=16.9

Q ss_pred             CccccccccccCCCCCCCCCCccccC
Q psy15047         59 FKTELCRLHDETGVCKFGTGCKFAHG   84 (165)
Q Consensus        59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~   84 (165)
                      ||+++|++|+..|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            46777777776677777777777776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.60  E-value=7.1e-09  Score=58.40  Aligned_cols=27  Identities=48%  Similarity=1.223  Sum_probs=21.8

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEE  123 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~  123 (165)
                      +++++|++|+..|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578999999989999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1040|consensus

Probab=98.47  E-value=1.2e-07  Score=81.87  Aligned_cols=74  Identities=24%  Similarity=0.462  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCC
Q psy15047         38 PTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRC  117 (165)
Q Consensus        38 ~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C  117 (165)
                      ..|.-+..|...|....  ...++++|++|+ .|.|..||.|.|+|.. ++.        +...|.+|...|.|..|..|
T Consensus        56 ~~~~~~~~~~~~~~~~~--~~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~--------k~rec~ff~~~g~c~~~~~c  123 (325)
T KOG1040|consen   56 KPCERGPICPKSHNDVS--DSRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLT--------KMRECKFFSLFGECTNGKDC  123 (325)
T ss_pred             CCccCCCCCccccCCcc--ccCCceeehhhh-hhhhhccCcCcchhhh-hhc--------ccccccccccccccccccCC
Confidence            44555566665555432  478899999998 8999999999999987 332        23345555555555555555


Q ss_pred             ccCCCC
Q psy15047        118 YFIHEE  123 (165)
Q Consensus       118 ~F~H~~  123 (165)
                      -|.|..
T Consensus       124 ~y~h~d  129 (325)
T KOG1040|consen  124 PYLHGD  129 (325)
T ss_pred             cccCCC
Confidence            555555

>smart00356 ZnF_C3H1 zinc finger

Probab=98.29  E-value=4.9e-07  Score=49.94  Aligned_cols=25  Identities=52%  Similarity=1.213  Sum_probs=18.0

Q ss_pred             CccccccccccCCCCCCCCCCccccC
Q psy15047         59 FKTELCRLHDETGVCKFGTGCKFAHG   84 (165)
Q Consensus        59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~   84 (165)
                      +|+.+|++| ..|.|.+|++|+|+|+
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            566677777 4777777777777775

>KOG2333|consensus

Probab=98.18  E-value=6.4e-07  Score=80.76  Aligned_cols=62  Identities=27%  Similarity=0.677  Sum_probs=49.5

Q ss_pred             ccccccccccC--CCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCC
Q psy15047         60 KTELCRLHDET--GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE  123 (165)
Q Consensus        60 KT~lC~~y~~~--G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~  123 (165)
                      +..||+..+..  ..|.||++|+|.|+++......  +.....-|+.|.+.|.|+||..|||+-..
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aH  138 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--APDIGPSCPVFESLGFCPYGFKCRFLGAH  138 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhcc--CcccCCccceeeccccCCccceeehhhcc
Confidence            57899999755  4799999999999997754432  22345679999999999999999997443

>KOG2494|consensus

Probab=98.04  E-value=1.6e-06  Score=74.51  Aligned_cols=64  Identities=27%  Similarity=0.570  Sum_probs=50.5

Q ss_pred             CCccccccccccCCCCCCCCC-CccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy15047         58 LFKTELCRLHDETGVCKFGTG-CKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS  128 (165)
Q Consensus        58 ~~KT~lC~~y~~~G~C~~Gd~-C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~  128 (165)
                      +..-++||-|+ .|.|.+||+ |+|+|......+.    .-+-..|-.|+ .|.|.. ++|+|+|+...++.
T Consensus        34 wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~----~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkd   98 (331)
T KOG2494|consen   34 WLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQVS----NGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKD   98 (331)
T ss_pred             hhHHHHHHHHH-hccccCCCccccccCCCCCCCcc----CCeEEEEeccc-cCccCc-ccceecCCChhhhh
Confidence            45569999998 889999999 9999988644321    12445699998 899976 67999999987754

>KOG1040|consensus

Probab=98.02  E-value=3e-06  Score=73.33  Aligned_cols=91  Identities=25%  Similarity=0.539  Sum_probs=67.6

Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCccccccc---------------CCCCc
Q psy15047         33 RYSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP---------------RHPRY   97 (165)
Q Consensus        33 ~~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~---------------~~~~~   97 (165)
                      ++.-.+.|+++..|.|.|.+    ...|...|.||...|.|..|..|.|.|+..+.....               .....
T Consensus        81 K~~l~glC~kgD~C~Flhe~----~~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~  156 (325)
T KOG1040|consen   81 KHWLRGLCKKGDQCEFLHEY----DLTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHE  156 (325)
T ss_pred             hhhhhhhhhccCcCcchhhh----hhcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhh
Confidence            45667999999999999987    456677899998899999999999999984322110               01123


Q ss_pred             cccccccccccccCCCCCC-CccCCCCCCCCC
Q psy15047         98 RTKLCQSYHQDGFCPYGQR-CYFIHEEKSVSS  128 (165)
Q Consensus        98 kt~~C~~f~~~G~C~~G~~-C~F~H~~~~~~~  128 (165)
                      +..+|..|. .|.|+-|.. |.+.|..-++..
T Consensus       157 ~~~~c~~y~-~gfC~~g~q~c~~~hp~~~~~~  187 (325)
T KOG1040|consen  157 RKVLCPPYN-AGFCPKGPQRCDMLHPEFQQPP  187 (325)
T ss_pred             cccCCCchh-hhhccCCCCcccccCCCCCCCh
Confidence            346788776 778888877 888887776655

>smart00356 ZnF_C3H1 zinc finger

Probab=98.02  E-value=3.8e-06  Score=46.28  Aligned_cols=26  Identities=50%  Similarity=1.329  Sum_probs=23.0

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEE  123 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~  123 (165)
                      +++.+|++| ..|.|++|+.|+|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            467799999 59999999999999973

>KOG1763|consensus

Probab=97.93  E-value=1.8e-06  Score=73.43  Aligned_cols=69  Identities=28%  Similarity=0.618  Sum_probs=51.3

Q ss_pred             cCCccccccccccCCCCCCCCCCccccCCcccccccC------------------------C--CCcc-ccccccccc--
Q psy15047         57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR------------------------H--PRYR-TKLCQSYHQ--  107 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~------------------------~--~~~k-t~~C~~f~~--  107 (165)
                      ...|+++|-+|. .|.|..|+.|.|+|+....+....                        +  +... ..+|+||+.  
T Consensus        88 vDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv  166 (343)
T KOG1763|consen   88 VDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV  166 (343)
T ss_pred             CCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence            457999999996 899999999999999876543210                        1  1111 247999975  


Q ss_pred             ----ccc---CCCCC-CCccCCCCCCC
Q psy15047        108 ----DGF---CPYGQ-RCYFIHEEKSV  126 (165)
Q Consensus       108 ----~G~---C~~G~-~C~F~H~~~~~  126 (165)
                          .||   ||+|- .|.|.|..++.
T Consensus       167 E~~kYGWfW~CPnGg~~C~YrHaLP~G  193 (343)
T KOG1763|consen  167 ENGKYGWFWECPNGGDKCIYRHALPEG  193 (343)
T ss_pred             hcCCccceeECCCCCCeeeeeecCCcc
Confidence                443   99975 89999998765

>KOG1595|consensus

Probab=97.64  E-value=4.2e-05  Score=69.50  Aligned_cols=67  Identities=30%  Similarity=0.527  Sum_probs=54.1

Q ss_pred             CccCCccccccccccCCCCCCCCCCcccc-CCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy15047         55 RENLFKTELCRLHDETGVCKFGTGCKFAH-GAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV  126 (165)
Q Consensus        55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH-~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~  126 (165)
                      +...||++.|.--    .|.-+..|.|+| +...-|..++.-.|...+|+.|. .|.|+.|+.|.|+|+.=|-
T Consensus       195 rMy~fKir~C~R~----~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfEc  262 (528)
T KOG1595|consen  195 RMYSFKIRRCSRP----RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFEC  262 (528)
T ss_pred             EEEeeeecccCCc----cCCCcccCCccCCCcccccCCcccccccCccCcccc-cCCCCCCCccccccceehh
Confidence            4556899999765    689999999999 55555555555568889999997 6999999999999997543

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.56  E-value=1.4e-05  Score=66.49  Aligned_cols=68  Identities=35%  Similarity=0.681  Sum_probs=51.6

Q ss_pred             cCCccccccccccCCCCCCCCCCccccCCcccccccCC-------------C------Cccccccccccc------cc--
Q psy15047         57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRH-------------P------RYRTKLCQSYHQ------DG--  109 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~-------------~------~~kt~~C~~f~~------~G--  109 (165)
                      ...|+++|-.|. .+.|..|+.|.|+|+.++.|....+             +      ..-.++|+||..      .|  
T Consensus        81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~  159 (299)
T COG5252          81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG  159 (299)
T ss_pred             cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence            457999999997 8999999999999998876653211             1      112367998864      23  


Q ss_pred             -cCCCC-CCCccCCCCCC
Q psy15047        110 -FCPYG-QRCYFIHEEKS  125 (165)
Q Consensus       110 -~C~~G-~~C~F~H~~~~  125 (165)
                       .||+| .+|.|.|...+
T Consensus       160 W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         160 WTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             eeCCCCCceeeeeeccCc
Confidence             39998 68999999876

>KOG1492|consensus

Probab=97.53  E-value=4.8e-05  Score=63.29  Aligned_cols=63  Identities=25%  Similarity=0.643  Sum_probs=36.2

Q ss_pred             ccccccccccCCCCCCCCCCccccCCccccccc---------------CCC--CccccccccccccccCCCCCCCccCCC
Q psy15047         60 KTELCRLHDETGVCKFGTGCKFAHGAHELRVIP---------------RHP--RYRTKLCQSYHQDGFCPYGQRCYFIHE  122 (165)
Q Consensus        60 KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~---------------~~~--~~kt~~C~~f~~~G~C~~G~~C~F~H~  122 (165)
                      ..+.|+||..+|.|-.|..|+|.|....-..-+               .|.  ..+...|++|+ .|.|.. .+|+|.|-
T Consensus       205 savycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldprripacryfl-lgkcnn-pncryvhi  282 (377)
T KOG1492|consen  205 SAVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNN-PNCRYVHI  282 (377)
T ss_pred             ceeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCccccchhhhhh-hccCCC-CCceEEEE
Confidence            446677776677777777777777653211000               000  12334577776 777744 67777765


Q ss_pred             CC
Q psy15047        123 EK  124 (165)
Q Consensus       123 ~~  124 (165)
                      .-
T Consensus       283 hy  284 (377)
T KOG1492|consen  283 HY  284 (377)
T ss_pred             ee
Confidence            43

>KOG1492|consensus

Probab=97.46  E-value=7e-05  Score=62.34  Aligned_cols=84  Identities=21%  Similarity=0.452  Sum_probs=65.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCccccccc---------CC-------CCc
Q psy15047         34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIP---------RH-------PRY   97 (165)
Q Consensus        34 ~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~---------~~-------~~~   97 (165)
                      |-.+|.|--|+-|+|-|..      ....+|+.|+ +|.|...+.|...|..+..|.+.         .+       ..|
T Consensus       212 ynangicgkgaacrfvhep------trkticpkfl-ngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihy  284 (377)
T KOG1492|consen  212 YNANGICGKGAACRFVHEP------TRKTICPKFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHY  284 (377)
T ss_pred             ecCCCcccCCceeeeeccc------cccccChHHh-cCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEee
Confidence            5788999999999887764      3446899998 89999999999999887655432         11       112


Q ss_pred             --cccccccccccccCCCCCCCccCCCCC
Q psy15047         98 --RTKLCQSYHQDGFCPYGQRCYFIHEEK  124 (165)
Q Consensus        98 --kt~~C~~f~~~G~C~~G~~C~F~H~~~  124 (165)
                        ...+|--|.+.|.|..|..|+-.|-..
T Consensus       285 senapicfefakygfcelgtscknqhilq  313 (377)
T KOG1492|consen  285 SENAPICFEFAKYGFCELGTSCKNQHILQ  313 (377)
T ss_pred             cCCCceeeeehhcceeccccccccceeee
Confidence              346799999999999999999888654

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.29  E-value=0.00065  Score=57.95  Aligned_cols=28  Identities=32%  Similarity=0.733  Sum_probs=16.9

Q ss_pred             CCccccccccccCCCCCCCCCCccccCCc
Q psy15047         58 LFKTELCRLHDETGVCKFGTGCKFAHGAH   86 (165)
Q Consensus        58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~   86 (165)
                      .+..++|++|. .|.|+.|..|.|+|+..
T Consensus       101 ~~s~V~c~~~~-~g~c~s~~~c~~lh~~d  128 (285)
T COG5084         101 LSSSVVCKFFL-RGLCKSGFSCEFLHEYD  128 (285)
T ss_pred             ccCCcccchhc-cccCcCCCccccccCCC
Confidence            45556666664 55666666666666554

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.28  E-value=0.0014  Score=55.99  Aligned_cols=82  Identities=27%  Similarity=0.525  Sum_probs=67.0

Q ss_pred             cCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccc--cccC
Q psy15047         34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ--DGFC  111 (165)
Q Consensus        34 ~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~--~G~C  111 (165)
                      +...+.|+-+..|.+.|.......  ....|++|...|.|..|..|.+.|....         .....|..|..  .+.|
T Consensus       109 ~~~~g~c~s~~~c~~lh~~d~~~s--~~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~  177 (285)
T COG5084         109 FFLRGLCKSGFSCEFLHEYDLRSS--QGPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFC  177 (285)
T ss_pred             hhccccCcCCCccccccCCCcccc--cCCCcccccccceeccCCCCCccccCcc---------cccccccccCccccccc
Confidence            567899999999999999876554  6788999976999999999999998722         23346776653  7899


Q ss_pred             CCCCCCccCCCCCCC
Q psy15047        112 PYGQRCYFIHEEKSV  126 (165)
Q Consensus       112 ~~G~~C~F~H~~~~~  126 (165)
                      ++|..|+|.|....+
T Consensus       178 p~g~~c~~~H~~~~~  192 (285)
T COG5084         178 PLGASCKFSHTLKRV  192 (285)
T ss_pred             CCCCccccccccccc
Confidence            999999999998855

>KOG2185|consensus

Probab=96.86  E-value=0.00054  Score=60.85  Aligned_cols=27  Identities=30%  Similarity=0.728  Sum_probs=22.7

Q ss_pred             ccccccccccccccCCCCCCCccCCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEEK  124 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~  124 (165)
                      ..+++|+||+ .|.|+||.+|||.|+..
T Consensus       138 ~sMkpC~ffL-eg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  138 ESMKPCKFFL-EGRCRFGENCRFSHGLD  164 (486)
T ss_pred             hhhccchHhh-ccccccCcccccccCcc
Confidence            4567899998 88999999999999876

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.19  E-value=0.0032  Score=32.46  Aligned_cols=19  Identities=32%  Similarity=0.850  Sum_probs=12.5

Q ss_pred             cccccccCCCCCCCCCCccccC
Q psy15047         63 LCRLHDETGVCKFGTGCKFAHG   84 (165)
Q Consensus        63 lC~~y~~~G~C~~Gd~C~FaH~   84 (165)
                      +|++|.   .|++|++|.|+|.
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            366664   2777777777773

>KOG2185|consensus

Probab=96.11  E-value=0.0021  Score=57.14  Aligned_cols=28  Identities=32%  Similarity=0.850  Sum_probs=24.3

Q ss_pred             CccccccccccCCCCCCCCCCccccCCcc
Q psy15047         59 FKTELCRLHDETGVCKFGTGCKFAHGAHE   87 (165)
Q Consensus        59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e   87 (165)
                      ...++|+||+ .|.|+||++|+|.|+...
T Consensus       138 ~sMkpC~ffL-eg~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  138 ESMKPCKFFL-EGRCRFGENCRFSHGLDV  165 (486)
T ss_pred             hhhccchHhh-ccccccCcccccccCccc
Confidence            3458999998 899999999999998753

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.85  E-value=0.0061  Score=31.41  Aligned_cols=19  Identities=32%  Similarity=0.646  Sum_probs=16.0

Q ss_pred             ccccccccccCCCCCCCccCCC
Q psy15047        101 LCQSYHQDGFCPYGQRCYFIHE  122 (165)
Q Consensus       101 ~C~~f~~~G~C~~G~~C~F~H~  122 (165)
                      +|++|.   .|++|+.|.|.|+
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            588765   4999999999995

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.53  E-value=0.0048  Score=50.45  Aligned_cols=31  Identities=32%  Similarity=0.785  Sum_probs=27.2

Q ss_pred             CCccccccccccCCCCCCCCCCccccCCccc
Q psy15047         58 LFKTELCRLHDETGVCKFGTGCKFAHGAHEL   88 (165)
Q Consensus        58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~el   88 (165)
                      -+...+|+-|..+|+|-|||.|.|.|+.++.
T Consensus       138 D~qpdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         138 DTQPDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             ecCcccccchhhcccccCCchhhhhhhhhhh
Confidence            3566899999889999999999999998754

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.47  E-value=0.014  Score=47.82  Aligned_cols=29  Identities=31%  Similarity=1.070  Sum_probs=25.5

Q ss_pred             cccccccccccccCCCCCCCccCCCCCCC
Q psy15047         98 RTKLCQSYHQDGFCPYGQRCYFIHEEKSV  126 (165)
Q Consensus        98 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~  126 (165)
                      ...+|+.|..+|+|-||+.|.|+|...+.
T Consensus       140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         140 QPDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             CcccccchhhcccccCCchhhhhhhhhhh
Confidence            34679999999999999999999998754

>KOG2333|consensus

Probab=94.44  E-value=0.021  Score=52.29  Aligned_cols=46  Identities=20%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             CCCCCCCCCCCCCCCCcCccC---CccccccccccCCCCCCCCCCcccc
Q psy15047         38 PTDTWNANGRYSHFYHSRENL---FKTELCRLHDETGVCKFGTGCKFAH   83 (165)
Q Consensus        38 ~~c~~~~~~~~~h~~~~~~~~---~KT~lC~~y~~~G~C~~Gd~C~FaH   83 (165)
                      ..|+|+.+|+|.|.+...-..   -=..-|+.|.+.|.|+||-+|+|+-
T Consensus        88 ~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   88 SKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             ccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhh
Confidence            689999999999988642222   2236799999899999999999973

>KOG2494|consensus

Probab=92.58  E-value=0.1  Score=45.28  Aligned_cols=86  Identities=17%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             CCCCCCCCC-CCCCCCCCc-CccCCccccccccccCCCCCCCCCCccccCCcccccccC-------------------CC
Q psy15047         37 KPTDTWNAN-GRYSHFYHS-RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR-------------------HP   95 (165)
Q Consensus        37 ~~~c~~~~~-~~~~h~~~~-~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~-------------------~~   95 (165)
                      .+.|.=+.. |+|.|+... .-+.-+-..|-.++ +|.|.+ ++|+|+|...+++....                   ..
T Consensus        45 rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkdql~ingrn~l~lq~~~aA~~~q~~  122 (331)
T KOG2494|consen   45 RNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKDQLKINGRNNLILQKTAAAMLAQQM  122 (331)
T ss_pred             hccccCCCccccccCCCCCCCccCCeEEEEeccc-cCccCc-ccceecCCChhhhhhhhhcccccHHHHHHHHhhhcccc
Confidence            477877777 999998753 33456678899998 889998 77999999887643210                   01


Q ss_pred             Cc-cccccc--cccccccCCCC-CCCccCCCCCC
Q psy15047         96 RY-RTKLCQ--SYHQDGFCPYG-QRCYFIHEEKS  125 (165)
Q Consensus        96 ~~-kt~~C~--~f~~~G~C~~G-~~C~F~H~~~~  125 (165)
                      .. .+.+|+  .|. .+.|.-| ..|+|.|-...
T Consensus       123 ~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~  155 (331)
T KOG2494|consen  123 QGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPP  155 (331)
T ss_pred             cCCCcccccccccc-ccccccCCCccccccccCC
Confidence            12 456777  554 6677765 46998887774

>KOG2202|consensus

Probab=92.12  E-value=0.052  Score=45.69  Aligned_cols=28  Identities=25%  Similarity=0.757  Sum_probs=23.7

Q ss_pred             ccccccccccccccCCCCCCCccCCCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      ++...|..|. .+.|.+|..|.|.|....
T Consensus       150 ~rea~C~~~e-~~~C~rG~~CnFmH~k~~  177 (260)
T KOG2202|consen  150 FREAICGQFE-RTECSRGGACNFMHVKRL  177 (260)
T ss_pred             hhhhhhcccc-cccCCCCCcCcchhhhhh
Confidence            4667899998 669999999999998753

>KOG1813|consensus

Probab=91.84  E-value=0.052  Score=46.62  Aligned_cols=31  Identities=32%  Similarity=0.852  Sum_probs=27.7

Q ss_pred             CCccccccccccCCCCCCCCCCccccCCccc
Q psy15047         58 LFKTELCRLHDETGVCKFGTGCKFAHGAHEL   88 (165)
Q Consensus        58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~el   88 (165)
                      -|...+|+-|..+|.|-||+.|.|.|+....
T Consensus       183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            4677899999889999999999999998764

>KOG4791|consensus

Probab=91.62  E-value=0.13  Score=47.04  Aligned_cols=78  Identities=19%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCC
Q psy15047         37 KPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQR  116 (165)
Q Consensus        37 ~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~  116 (165)
                      -..|+++..|.|.|.-..   ..-...|++|+..-.|+.  -|.|-|+.-.+.       ....+|-++.....|-. .+
T Consensus        11 ys~cKk~d~c~~rh~E~a---l~n~t~C~~w~~~~~C~k--~C~YRHSe~~~k-------r~e~~CYwe~~p~gC~k-~~   77 (667)
T KOG4791|consen   11 YSTCKKGDSCPFRHCEAA---LGNETVCTLWQEGRCCRK--VCRYRHSEIDKK-------RSEIPCYWENQPTGCQK-LN   77 (667)
T ss_pred             hhhhhccCcCcchhhHHH---hcCcchhhhhhhcCcccc--cccchhhHHhhh-------cCcccceeecCCCccCC-Cc
Confidence            356888888877665432   233467999986667776  999999874332       24568988774344865 89


Q ss_pred             CccCCCCCCCC
Q psy15047        117 CYFIHEEKSVS  127 (165)
Q Consensus       117 C~F~H~~~~~~  127 (165)
                      |-|.|..++|.
T Consensus        78 CgfRH~~pPLk   88 (667)
T KOG4791|consen   78 CGFRHNRPPLK   88 (667)
T ss_pred             cccccCCCchh
Confidence            99999776553

>KOG1039|consensus

Probab=91.07  E-value=0.08  Score=46.42  Aligned_cols=24  Identities=33%  Similarity=0.908  Sum_probs=22.7

Q ss_pred             ccccccccCCCCCCCCCCccccCCc
Q psy15047         62 ELCRLHDETGVCKFGTGCKFAHGAH   86 (165)
Q Consensus        62 ~lC~~y~~~G~C~~Gd~C~FaH~~~   86 (165)
                      .+|++|+ .|.|+||+.|+|.|...
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCc
Confidence            8999998 89999999999999887

>KOG1039|consensus

Probab=90.33  E-value=0.14  Score=44.86  Aligned_cols=25  Identities=28%  Similarity=0.820  Sum_probs=23.1

Q ss_pred             cccccccccccCCCCCCCccCCCCCC
Q psy15047        100 KLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus       100 ~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      .+|++|+ .|.|+||..|+|.|....
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCch
Confidence            6999988 899999999999999884

>KOG3702|consensus

Probab=89.50  E-value=0.53  Score=44.40  Aligned_cols=83  Identities=23%  Similarity=0.415  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCCCCCCCcCccCC-----ccccccccccCCCCCCCCC-----CccccCCccccc--ccCC---C-Ccccc
Q psy15047         37 KPTDTWNANGRYSHFYHSRENLF-----KTELCRLHDETGVCKFGTG-----CKFAHGAHELRV--IPRH---P-RYRTK  100 (165)
Q Consensus        37 ~~~c~~~~~~~~~h~~~~~~~~~-----KT~lC~~y~~~G~C~~Gd~-----C~FaH~~~elr~--~~~~---~-~~kt~  100 (165)
                      -+.|. ++.|.|.|.......+.     -...|-+-  .-.|.+|..     |.|.|+..-...  ...+   + ...+.
T Consensus       550 ~~~Ct-~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks--~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~  626 (681)
T KOG3702|consen  550 GPACT-SAECEFAHPTAAENAKSLPNKKFASKCLKS--HPGCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRG  626 (681)
T ss_pred             CCcCC-chhhhhcCCcchhhhhccccccccccceec--ccccccccccccccCcccccCCCCCCccccCCCCCCCCCccc
Confidence            35565 67778888776522211     11223333  245777664     678888755311  1111   1 23456


Q ss_pred             ccccccccccCCCCCCCccCCCCCCC
Q psy15047        101 LCQSYHQDGFCPYGQRCYFIHEEKSV  126 (165)
Q Consensus       101 ~C~~f~~~G~C~~G~~C~F~H~~~~~  126 (165)
                      +|+|+   |.|+. .-|+|.|+..-.
T Consensus       627 ~CrY~---pnCrn-m~C~F~HPk~cR  648 (681)
T KOG3702|consen  627 LCRYR---PNCRN-MQCKFYHPKTCR  648 (681)
T ss_pred             cceec---cCcCC-ccccccCCcccc
Confidence            78863   56765 668888887644

>KOG1813|consensus

Probab=88.97  E-value=0.12  Score=44.47  Aligned_cols=29  Identities=31%  Similarity=1.068  Sum_probs=25.3

Q ss_pred             cccccccccccccCCCCCCCccCCCCCCC
Q psy15047         98 RTKLCQSYHQDGFCPYGQRCYFIHEEKSV  126 (165)
Q Consensus        98 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~  126 (165)
                      -..+|+.|..+|+|-||+.|.|.|...+.
T Consensus       185 qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            34579999999999999999999997744

>KOG4791|consensus

Probab=88.88  E-value=0.12  Score=47.34  Aligned_cols=55  Identities=25%  Similarity=0.527  Sum_probs=41.4

Q ss_pred             ccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         62 ELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        62 ~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      .-|.||+ ...|++++.|.|.|....+..        ...|.+|+..-.|+.  .|.|.|..=.+.
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n--------~t~C~~w~~~~~C~k--~C~YRHSe~~~k   58 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALGN--------ETVCTLWQEGRCCRK--VCRYRHSEIDKK   58 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhcC--------cchhhhhhhcCcccc--cccchhhHHhhh
Confidence            3477776 678999999999998865432        347999996655664  899999865543

>KOG1763|consensus

Probab=88.08  E-value=0.11  Score=44.69  Aligned_cols=33  Identities=21%  Similarity=0.605  Sum_probs=28.1

Q ss_pred             CccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy15047         96 RYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSR  129 (165)
Q Consensus        96 ~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~  129 (165)
                      ..++.+|-+|. .|.|.-|..|.|+|+....+..
T Consensus        89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~  121 (343)
T KOG1763|consen   89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKK  121 (343)
T ss_pred             CchHHHHHHHh-ccCCCCCCcccccchHHHhhhc
Confidence            35788999997 8999999999999998866544

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=82.97  E-value=0.79  Score=24.81  Aligned_cols=20  Identities=35%  Similarity=0.713  Sum_probs=8.7

Q ss_pred             ccccccccccCCCCCCCccCC
Q psy15047        101 LCQSYHQDGFCPYGQRCYFIH  121 (165)
Q Consensus       101 ~C~~f~~~G~C~~G~~C~F~H  121 (165)
                      +|++-.+.|.|.. ..|.|.|
T Consensus         2 lC~yEl~Gg~Cnd-~~C~~QH   21 (23)
T PF10650_consen    2 LCPYELTGGVCND-PDCEFQH   21 (23)
T ss_pred             CCccccCCCeeCC-CCCCccc
Confidence            3444443335532 3455544

>KOG3702|consensus

Probab=81.87  E-value=3.2  Score=39.32  Aligned_cols=74  Identities=24%  Similarity=0.433  Sum_probs=45.5

Q ss_pred             ccCCCCCCCCCCC-----CCCCCCCCcCccCCccccccccc--cCCCCCCCCC-----CccccCCcccccccCCCCcccc
Q psy15047         33 RYSSKPTDTWNAN-----GRYSHFYHSRENLFKTELCRLHD--ETGVCKFGTG-----CKFAHGAHELRVIPRHPRYRTK  100 (165)
Q Consensus        33 ~~~~~~~c~~~~~-----~~~~h~~~~~~~~~KT~lC~~y~--~~G~C~~Gd~-----C~FaH~~~elr~~~~~~~~kt~  100 (165)
                      +..+-+-|.++..     |.++|.....+..+|+..|.+=+  ..+.|+|+.+     |.|.|..               
T Consensus       581 ~~ks~p~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~pnCrnm~C~F~HPk---------------  645 (681)
T KOG3702|consen  581 CLKSHPGCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYRPNCRNMQCKFYHPK---------------  645 (681)
T ss_pred             ceecccccccccccccccCcccccCCCCCCccccCCCCCCCCCccccceeccCcCCccccccCCc---------------
Confidence            3456666777655     45666665433335665555541  1356777665     5677754               


Q ss_pred             ccccccccccCCCCCCCccCCCCC
Q psy15047        101 LCQSYHQDGFCPYGQRCYFIHEEK  124 (165)
Q Consensus       101 ~C~~f~~~G~C~~G~~C~F~H~~~  124 (165)
                      .|++   ..+|+....|.|.|...
T Consensus       646 ~cRf---~~~c~~~~sc~fYh~r~  666 (681)
T KOG3702|consen  646 TCRF---NTNCPNNPSCTFYHERP  666 (681)
T ss_pred             cccc---cccCCCCcccccccCCc
Confidence            5663   45788878899999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		1e-19
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		2e-16

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR  +E+G CK+G  C+FAHG HELR + RHP+Y+T+LC+++H  GFCPYG RC+
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 63
Query: 119 FIH 121
           FIH
Sbjct: 64  FIH 66

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 59  FKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCY 118
           +KTELCR + E+G C++G  C+FAHG  ELR   RHP+Y+T+LC  +   G CPYG RC+
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCH 69
Query: 119 FIH 121
           FIH
Sbjct: 70  FIH 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-20
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-05
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	2e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 79.2 bits (195), Expect = 2e-20
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query: 54  SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 113
           +  + +KTELCR + E+G C++G  C+FAHG  ELR   RHP+Y+T+LC  +   G CPY
Sbjct: 5   TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPY 64

Query: 114 GQRCYFIHEE 123
           G RC+FIH  
Sbjct: 65  GSRCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 91  IPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEE 123
           +    RY+T+LC++Y + G C YG +C F H  
Sbjct: 4   MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGL 36

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 44 ANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87
          A+G       +R   +KTELC      G C +G+ C F H   E
Sbjct: 33 AHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 15/70 (21%)

Query: 60  KTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119
           K ELC+    TG C     C + HG                 C+ YH  G C  G  C F
Sbjct: 12  KRELCK-FYITGFCARAENCPYMHGDFP--------------CKLYHTTGNCINGDDCMF 56

Query: 120 IHEEKSVSSR 129
            H+  +  +R
Sbjct: 57  SHDPLTEETR 66

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 48  YSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ 107
           + H +HS  +  KT +C+ H   G+CK G  C+F H              +   C  Y +
Sbjct: 3   HHHHHHSHMSGEKTVVCK-HWLRGLCKKGDQCEFLHEYDM---------TKMSECYFYSK 52

Query: 108 DGFCPYGQRCYFIHEE 123
            G C   + C F+H +
Sbjct: 53  FGECS-NKECPFLHID 67

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 60  KTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYF 119
           KT +C+ H   G+CK G  C+F H              +   C  Y + G C   + C F
Sbjct: 9   KTVVCK-HWLRGLCKKGDQCEFLHEYDM---------TKMPECYFYSKFGEC-SNKECPF 57

Query: 120 IHEEKS 125
           +H +  
Sbjct: 58  LHIDPE 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 10/75 (13%)

Query: 11  YPWDHNEKMDK-HWASLRPA-TEERYSSKPTDTWNANGRYSHFYHSRENLF---KTELCR 65
           Y +     M        +P+     Y  +    +N N  ++ +  SR   +   +  L  
Sbjct: 91  YKF----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 66  LHDETGVCKFG-TGC 79
           L     V   G  G 
Sbjct: 147 LRPAKNVLIDGVLGS 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.81
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.51
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.46
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.37
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.23
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.12
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.07
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.92
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.74
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.72
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.66
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.58
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.27
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.18
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.13
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.68
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	97.27
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.11
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.07
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.73
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.71
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	96.5
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.79
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	93.53
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	92.12
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	89.8

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.81  E-value=5.4e-21  Score=130.84  Aligned_cols=71  Identities=49%  Similarity=1.091  Sum_probs=34.7

Q ss_pred             CccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047         55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      .+.++||+||++|+..|.|++|++|+|+|+..+++....++.+++.+|++|...|.|++|.+|+|+|+..+
T Consensus         6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred             CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            35689999999998789999999999999999999877777899999999988999999999999998764

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.51  E-value=1e-14  Score=104.75  Aligned_cols=61  Identities=33%  Similarity=0.625  Sum_probs=52.0

Q ss_pred             CCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047         47 RYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        47 ~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      .++|.+   ...+|+++|++|+ .|.|++|++|+|+|+              +.+|++|+..|.|++|.+|+|+|....
T Consensus         2 ~~sH~~---~~~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A            2 SSGSSG---ELPKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             CCCCCC---CCSCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CccccC---CCCCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            345554   3458999999997 899999999999998              358999987999999999999999653

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.4e-14  Score=97.07  Aligned_cols=64  Identities=27%  Similarity=0.523  Sum_probs=53.8

Q ss_pred             ccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy15047         56 ENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSRG  130 (165)
Q Consensus        56 ~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~  130 (165)
                      ...+|+++|++|+ .|.|++|+.|.|+|+...         .++.+|++|+..|.|. |++|+|+|...+.....
T Consensus         5 ~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~---------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~   68 (77)
T 2d9n_A            5 SSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDM---------TKMPECYFYSKFGECS-NKECPFLHIDPESKIKD   68 (77)
T ss_dssp             CSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCT---------TTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSS
T ss_pred             CCCCcceeCHhHc-cCcCCCCCCCCCcccccc---------CcCCCCcccCCCCccC-CCCeeccCCCccccCCC
Confidence            3568999999998 599999999999999854         2456899999669999 89999999987665443

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.37  E-value=1.6e-13  Score=93.39  Aligned_cols=62  Identities=27%  Similarity=0.520  Sum_probs=51.4

Q ss_pred             CccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      -....++++|++|+ .|.|.+|+.|.|+|+...         .++.+|++|+..|.|.+ ++|+|.|..++.+
T Consensus        10 ~~~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~---------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k   71 (72)
T 2rhk_C           10 HMSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDM---------TKMSECYFYSKFGECSN-KECPFLHIDPESK   71 (72)
T ss_dssp             SSSCCCCSBCHHHH-TTCCCCGGGSSSBCSCCT---------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred             cCCCCcCeeCHHHh-cCCCCCCCCCCCcccccc---------ccCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence            34568899999998 599999999999999743         24668999996699999 9999999987653

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.23  E-value=1.7e-12  Score=87.61  Aligned_cols=65  Identities=26%  Similarity=0.583  Sum_probs=52.7

Q ss_pred             CCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         58 LFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        58 ~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      ..|.++|++|+ .|.|.+|+ .|+|+|+..++...  ....++.+|.+|+ .|.|..| .|+|+|....|+
T Consensus         3 ~~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~--~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A            3 TDRLEVCREYQ-RGNCNRGENDCRFAHPADSTMID--TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             -CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB--TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred             cccchhCHHHh-cCCCCCCCCCCCCccCccccccc--ccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence            45778999997 89999999 59999998765332  1235788999998 6999999 999999987664

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.12  E-value=1.6e-11  Score=83.37  Aligned_cols=54  Identities=30%  Similarity=0.589  Sum_probs=18.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCCcC-----ccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047         34 YSSKPTDTWNANGRYSHFYHSR-----ENLFKTELCRLHDETGVCKFGTGCKFAHGAHE   87 (165)
Q Consensus        34 ~~~~~~c~~~~~~~~~h~~~~~-----~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e   87 (165)
                      |...|.|++|.+|+|+|...+.     ...+||.+|++|...|.|++|++|+|+|+..|
T Consensus        18 f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           18 YSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             GGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred             hhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            5578999999999999998642     34689999998877999999999999999865

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=9.7e-12  Score=89.24  Aligned_cols=66  Identities=27%  Similarity=0.575  Sum_probs=54.2

Q ss_pred             cCCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         57 NLFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      ...|.++|++|+ .|.|.+|+ .|+|+|+..++...  ....+..+|.+|+ .|.|..| .|+|.|....+.
T Consensus        16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~~--~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l~   82 (98)
T 2e5s_A           16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMID--TSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHLQ   82 (98)
T ss_dssp             CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSCC--TTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHHH
T ss_pred             ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhcccc--ccCCccccchhhc-cCCCCCC-CcCccCChHHHH
Confidence            457889999998 69999999 79999998765432  1235678999998 7999999 999999987653

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.92  E-value=3e-10  Score=79.16  Aligned_cols=64  Identities=27%  Similarity=0.543  Sum_probs=51.9

Q ss_pred             cCCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy15047         57 NLFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVS  127 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~  127 (165)
                      .+.+..+|+.|+ .|.|.+|+ .|+|+|....+...    ..+..+|.+|+ .|.|..+ .|+|.|....+.
T Consensus         5 ~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~~----~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~   69 (83)
T 3d2n_A            5 KWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQVE----NGRVIACFDSL-KGRCSRE-NCKYLHPPPHLK   69 (83)
T ss_dssp             GGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCEE----TTEEECCHHHH-TTCCCCS-SCSSCCCCHHHH
T ss_pred             ccccchhcHHHh-cCCCCCCCCCCCCcCCCcccccc----CCceeehhHhh-hccccCC-CcceeCChHHHH
Confidence            467889999998 59999997 99999998654321    23567899998 7999998 899999987553

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=8.7e-09  Score=70.41  Aligned_cols=56  Identities=21%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcccccccCCCCcccccccccc
Q psy15047         37 KPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYH  106 (165)
Q Consensus        37 ~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~  106 (165)
                      .|.|..|.+|.|+|....    .++.+|++|++.|.|. |+.|.|+|...+         .++.+|++|.
T Consensus        18 ~G~C~~G~~C~fsH~~~~----~~~~~C~~f~~~G~C~-~~~C~f~H~~~~---------~~~~~C~~f~   73 (77)
T 2d9n_A           18 RGLCKKGDQCEFLHEYDM----TKMPECYFYSKFGECS-NKECPFLHIDPE---------SKIKDCPWSG   73 (77)
T ss_dssp             TTCCSCTTSSSSBCSCCT----TTSCBCHHHHHTCCCC-CSSCSSBCCCTT---------SSCSSSSCCT
T ss_pred             cCcCCCCCCCCCcccccc----CcCCCCcccCCCCccC-CCCeeccCCCcc---------ccCCCCcccc
Confidence            399999999999998753    3567999999669999 999999999743         4577999997

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.72  E-value=9.7e-09  Score=72.40  Aligned_cols=63  Identities=27%  Similarity=0.568  Sum_probs=51.0

Q ss_pred             cCCccccccccccCCCCCCCC-CCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy15047         57 NLFKTELCRLHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV  126 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd-~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~  126 (165)
                      .+.+..+|+.|+ .|.|..|+ .|+|+|....+...    ..+..+|.+|+ .|.|..+ .|+|.|....+
T Consensus        13 ~~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v~----~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl   76 (89)
T 2rpp_A           13 KWLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQVE----NGRVIACFDSL-KGRCSRE-NCKYLHPPTHL   76 (89)
T ss_dssp             SSSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCCB----TTBEEBCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred             CcchhhhchHHh-cCCCCCCCCCCCCcCCCcccccc----CCceeeehhhh-hCcCCCC-CcceecCHHHH
Confidence            356788999998 69999998 99999998653221    23567899998 7999997 89999998754

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=3.5e-09  Score=71.26  Aligned_cols=46  Identities=30%  Similarity=0.472  Sum_probs=34.6

Q ss_pred             cCCccccccccccCCCCCCCCCCccccCCcccccccC-CCCccccccc
Q psy15047         57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVIPR-HPRYRTKLCQ  103 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~-~~~~kt~~C~  103 (165)
                      ...|++||+.|+ .|.|+||++|.|||+.+||+.... ....++++++
T Consensus        16 P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~   62 (69)
T 2d9m_A           16 PTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNK   62 (69)
T ss_dssp             CCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCS
T ss_pred             CCCCcccCcccC-cCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHH
Confidence            345779999995 889999999999999999987431 1223455555

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.58  E-value=4.4e-08  Score=69.99  Aligned_cols=45  Identities=27%  Similarity=0.400  Sum_probs=39.7

Q ss_pred             cCCCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047         34 YSSKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE   87 (165)
Q Consensus        34 ~~~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e   87 (165)
                      |...|.|.+|.+|.|+|.         +.+|++|+..|.|++|++|+|+|....
T Consensus        18 ~f~~G~C~~G~~C~f~H~---------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           18 FYITGFCARAENCPYMHG---------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             TTTTTCCSCSTTCSSBSS---------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             ccccCcCCCCCCCCCCCC---------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            335799999999999998         688999976899999999999998653

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.27  E-value=4.9e-07  Score=60.56  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=44.0

Q ss_pred             CCCCCCCCCC-CCCCCCCCc---CccCCccccccccccCCCCCCCCCCccccCCcccc
Q psy15047         36 SKPTDTWNAN-GRYSHFYHS---RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR   89 (165)
Q Consensus        36 ~~~~c~~~~~-~~~~h~~~~---~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr   89 (165)
                      ..|.|.-+.+ |.|+|....   .....++.+|.+|+ .|.|.+| .|.|+|...+|+
T Consensus        13 ~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~   68 (70)
T 3d2q_A           13 QRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ   68 (70)
T ss_dssp             HTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred             hcCCCCCCCCCCCCccCcccccccccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence            4599999994 999998753   44578899999998 6999999 999999987765

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=1.4e-07  Score=63.47  Aligned_cols=33  Identities=30%  Similarity=0.751  Sum_probs=28.7

Q ss_pred             CCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy15047         95 PRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS  128 (165)
Q Consensus        95 ~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~  128 (165)
                      |..++.+|+.|. .|.|+||++|.|||+..+|+.
T Consensus        16 P~~k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           16 PTGYFSICDRYM-NGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSCCSBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred             CCCCcccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence            345679999994 899999999999999999875

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.13  E-value=7.3e-07  Score=60.20  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCCCCCCCCcCccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047         36 SKPTDTWNANGRYSHFYHSRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE   87 (165)
Q Consensus        36 ~~~~c~~~~~~~~~h~~~~~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e   87 (165)
                      -.|.|..|.+|.|+|...    ..++.+|++|++.|.|.+ +.|.|.|...+
T Consensus        23 l~G~C~~G~~C~fsH~~~----~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           23 LRGLCKKGDQCEFLHEYD----MTKMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             HTTCCCCGGGSSSBCSCC----TTSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             hcCCCCCCCCCCCccccc----cccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            339999999999999874    346789999995599999 99999998754

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=8.1e-06  Score=58.20  Aligned_cols=51  Identities=20%  Similarity=0.269  Sum_probs=43.2

Q ss_pred             CCCCCCC-CCCCCCCCCc---CccCCccccccccccCCCCCCCCCCccccCCccccc
Q psy15047         38 PTDTWNA-NGRYSHFYHS---RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRV   90 (165)
Q Consensus        38 ~~c~~~~-~~~~~h~~~~---~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~   90 (165)
                      |.|.-+. .|+|+|....   .....++.+|.+|+ .|.|.+| .|+|.|...+++.
T Consensus        29 G~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~l~~   83 (98)
T 2e5s_A           29 GNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAHLQA   83 (98)
T ss_dssp             TCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHHHHH
T ss_pred             CcCCCCCCCCCCcCCchhccccccCCccccchhhc-cCCCCCC-CcCccCChHHHHH
Confidence            9999998 7999999753   23468899999998 7999999 9999999877643

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=97.27  E-value=6.1e-05  Score=47.23  Aligned_cols=29  Identities=28%  Similarity=0.749  Sum_probs=23.7

Q ss_pred             ccccccccccccccCCCCCCCccCCCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      ..+.+|..|.+.|+|++|..|.+.|+.+-
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            46778888888888888888888888653

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.11  E-value=0.00064  Score=55.07  Aligned_cols=46  Identities=24%  Similarity=0.611  Sum_probs=39.7

Q ss_pred             ccccccccccC----CCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047         60 KTELCRLHDET----GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        60 KT~lC~~y~~~----G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      =.++|.+| +.    |.|.+++.|...|                 +|++|. .|.|+| ..|+-.|+..+
T Consensus       150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------IC~~Fl-~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          150 LPEICKSY-KGEGRKQTCGQPQPCERLH-----------------ICEHFT-RGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             SCCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------SCHHHH-TTCCCC-SSCSSCCCTTS
T ss_pred             CchHHHHh-CCCCCCCcCCCCCCCccee-----------------ccchhh-cCCcCC-CCccCccCccC
Confidence            36899999 53    6899999999877                 899998 899999 89999999754

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.07  E-value=0.00032  Score=48.46  Aligned_cols=51  Identities=20%  Similarity=0.266  Sum_probs=41.3

Q ss_pred             CCCCCCC-CCCCCCCCCc-CccCCccccccccccCCCCCCCCCCccccCCccccc
Q psy15047         38 PTDTWNA-NGRYSHFYHS-RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRV   90 (165)
Q Consensus        38 ~~c~~~~-~~~~~h~~~~-~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~   90 (165)
                      |.|.-+. .|+|+|.... ....-+..+|.+|+ .|.|..+ .|+|.|....+..
T Consensus        18 G~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l~~   70 (83)
T 3d2n_A           18 GTCSRPDTECKFAHPSKSCQVENGRVIACFDSL-KGRCSRE-NCKYLHPPPHLKT   70 (83)
T ss_dssp             TCCCSCTTTCSSBCCCTTCCEETTEEECCHHHH-TTCCCCS-SCSSCCCCHHHHH
T ss_pred             CCCCCCCCCCCCcCCCccccccCCceeehhHhh-hccccCC-CcceeCChHHHHH
Confidence            8999996 8999999742 22345789999998 7999998 9999999876543

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.73  E-value=0.00036  Score=43.69  Aligned_cols=29  Identities=24%  Similarity=0.533  Sum_probs=26.8

Q ss_pred             CCccccccccccCCCCCCCCCCccccCCc
Q psy15047         58 LFKTELCRLHDETGVCKFGTGCKFAHGAH   86 (165)
Q Consensus        58 ~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~   86 (165)
                      ..++.+|..|...|.|++|.+|.+.|+++
T Consensus        17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             ccccchhhhccccccCCCCCCCCccccCC
Confidence            47899999999899999999999999985

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.71  E-value=0.00082  Score=54.44  Aligned_cols=62  Identities=26%  Similarity=0.539  Sum_probs=44.5

Q ss_pred             ccccccccCCCCC----CCCCCccccCCcccccc---------------------cCCCCccccccccccc---cccCCC
Q psy15047         62 ELCRLHDETGVCK----FGTGCKFAHGAHELRVI---------------------PRHPRYRTKLCQSYHQ---DGFCPY  113 (165)
Q Consensus        62 ~lC~~y~~~G~C~----~Gd~C~FaH~~~elr~~---------------------~~~~~~kt~~C~~f~~---~G~C~~  113 (165)
                      =+|++|+ -|.|+    .+..|+|.|+.......                     ...|..-..+|.+|..   .|.|.+
T Consensus        90 HLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~YkG~g~~g~C~~  168 (229)
T 3u9g_A           90 HLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSYKGEGRKQTCGQ  168 (229)
T ss_dssp             CCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTCCCSSSCCSCSS
T ss_pred             eechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHhCCCCCCCcCCC
Confidence            3799998 79993    45789999988653211                     0223445679999932   379999


Q ss_pred             CCCCccCCCCC
Q psy15047        114 GQRCYFIHEEK  124 (165)
Q Consensus       114 G~~C~F~H~~~  124 (165)
                      +..|...|.=.
T Consensus       169 ~~~C~kLHIC~  179 (229)
T 3u9g_A          169 PQPCERLHICE  179 (229)
T ss_dssp             SSCCCSBCSCH
T ss_pred             CCCCcceeccc
Confidence            99999998754

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=96.50  E-value=0.0018  Score=45.28  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             CCCCCCC-CCCCCCCCCc-CccCCccccccccccCCCCCCCCCCccccCCcccc
Q psy15047         38 PTDTWNA-NGRYSHFYHS-RENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR   89 (165)
Q Consensus        38 ~~c~~~~-~~~~~h~~~~-~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr   89 (165)
                      |.|.-+. .|+|+|.... .-..-+..+|..|+ .|.|..+ .|+|.|....+.
T Consensus        26 G~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~hl~   77 (89)
T 2rpp_A           26 GTCSRSDEECKFAHPPKSCQVENGRVIACFDSL-KGRCSRE-NCKYLHPPTHLK   77 (89)
T ss_dssp             TCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHH-HTCCCCT-TCCSBCCCHHHH
T ss_pred             CCCCCCCCCCCCcCCCccccccCCceeeehhhh-hCcCCCC-CcceecCHHHHH
Confidence            8899887 8999998753 22345789999998 8999997 999999987654

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.79  E-value=0.0015  Score=44.80  Aligned_cols=45  Identities=27%  Similarity=0.486  Sum_probs=32.6

Q ss_pred             cccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy15047         61 TELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSV  126 (165)
Q Consensus        61 T~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~  126 (165)
                      ..+|+++.   .|.. ..|.|+|..             .+.|+++.   .|.. ..|.|.|....+
T Consensus        31 ~~~Cr~g~---~C~~-~~C~f~HP~-------------~~~Crf~~---~C~n-~~C~F~Hp~g~~   75 (80)
T 2lhn_A           31 HIMCREGA---NCTR-IDCLFGHPI-------------NEDCRFGV---NCKN-IYCLFRHPPGRV   75 (80)
Confidence            35788874   5887 679999963             24788654   7888 789999975543

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=93.53  E-value=0.0065  Score=41.65  Aligned_cols=42  Identities=26%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             cccccccccCCCCCCCCCCccccCCcccccccCCCCccccccccccccccCCCCCCCccCCC
Q psy15047         61 TELCRLHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYGQRCYFIHE  122 (165)
Q Consensus        61 T~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~  122 (165)
                      .++|+||.   .|.. +.|.|.|...            ..+|+++   ..|.. ..|.|.|+
T Consensus         9 ~e~CKf~~---~Ctn-~~C~f~Hp~~------------~~~Cr~g---~~C~~-~~C~f~HP   50 (80)
T 2lhn_A            9 LEQCKFGT---HCTN-KRCKYRHARS------------HIMCREG---ANCTR-IDCLFGHP   50 (80)
Confidence            46899995   4999 9999999652            2378875   37887 77999997

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=92.12  E-value=0.033  Score=45.09  Aligned_cols=25  Identities=24%  Similarity=0.688  Sum_probs=22.0

Q ss_pred             cccccccccCCCCCCCCCCccccCCc
Q psy15047         61 TELCRLHDETGVCKFGTGCKFAHGAH   86 (165)
Q Consensus        61 T~lC~~y~~~G~C~~Gd~C~FaH~~~   86 (165)
                      .-+|.||. .|.|++|+.|.|.|...
T Consensus        70 ~~~C~ffa-kG~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           70 LFFCLFFA-KGMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CSBCHHHH-TTCCSCGGGCSSBBSCC
T ss_pred             CeEcCccc-cCCCCCCCCCCccCCCC
Confidence            45999998 69999999999999764

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=89.80  E-value=0.07  Score=43.17  Aligned_cols=26  Identities=23%  Similarity=0.709  Sum_probs=22.5

Q ss_pred             ccccccccccccCCCCCCCccCCCCCC
Q psy15047         99 TKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        99 t~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      ..+|.+|. .|.|+.|..|.|.|..+.
T Consensus        70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFA-KGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred             CeEcCccc-cCCCCCCCCCCccCCCCC
Confidence            35899997 699999999999998664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	9e-11
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-07
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	1e-09
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	5e-07
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-09
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	3e-07

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 9e-11
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 93  RHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
           RHP+Y+T+LC+++H  GFCPYG RC+FIH   
Sbjct: 2   RHPKYKTELCRTFHTIGFCPYGPRCHFIHNAD 33

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 1e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHE 87
          +R   +KTELCR     G C +G  C F H A E
Sbjct: 1  TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 54 SRENLFKTELCRLHDETGVCKFGTGCKFAHGAHELR 89
          +  + +KTELCR + E+G C++G  C+FAHG  ELR
Sbjct: 2  TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 37

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (99), Expect = 5e-07
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 93  RHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
              RY+T+LC++Y + G C YG +C F H   
Sbjct: 3   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLG 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 2e-09
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 59 FKTELCRLHDETGVCKFGTGCKFAHGAHELR 89
          +KTELCR  +E+G CK+G  C+FAHG HELR
Sbjct: 4  YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 3e-07
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 96  RYRTKLCQSYHQDGFCPYGQRCYFIHEEK 124
           RY+T+LC+ + + G C YG++C F H   
Sbjct: 3   RYKTELCRPFEESGTCKYGEKCQFAHGFH 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.37
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.36
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.29
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.15
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.14
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.03
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.11
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.55
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.3
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.83
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	96.22
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	91.04

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.4e-13  Score=82.34  Aligned_cols=36  Identities=50%  Similarity=0.999  Sum_probs=32.0

Q ss_pred             ccCCccccccccccCCCCCCCCCCccccCCcccccc
Q psy15047         56 ENLFKTELCRLHDETGVCKFGTGCKFAHGAHELRVI   91 (165)
Q Consensus        56 ~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~~   91 (165)
                      +.+|||+||++|...|.|++|++|.|||+.+|||.+
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            568999999999888999999999999999999864

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.4e-14  Score=83.22  Aligned_cols=34  Identities=59%  Similarity=1.176  Sum_probs=31.2

Q ss_pred             cCCccccccccccCCCCCCCCCCccccCCccccc
Q psy15047         57 NLFKTELCRLHDETGVCKFGTGCKFAHGAHELRV   90 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~elr~   90 (165)
                      .+|||+||++|...|.|++|++|.|||+.+|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            5899999999987899999999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-13  Score=79.25  Aligned_cols=33  Identities=45%  Similarity=0.954  Sum_probs=26.9

Q ss_pred             CccCCccccccccccCCCCCCCCCCccccCCcc
Q psy15047         55 RENLFKTELCRLHDETGVCKFGTGCKFAHGAHE   87 (165)
Q Consensus        55 ~~~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~~e   87 (165)
                      ++.+|||+||++|...|.|+||++|.|||+.+|
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            346788888888877888888888888888764

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1e-11  Score=74.06  Aligned_cols=36  Identities=36%  Similarity=0.898  Sum_probs=33.3

Q ss_pred             CCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy15047         94 HPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSSR  129 (165)
Q Consensus        94 ~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~  129 (165)
                      ...|||++|++|...|.|++|++|.|+|+.+||+..
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            357999999999989999999999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.4e-12  Score=73.58  Aligned_cols=33  Identities=58%  Similarity=1.417  Sum_probs=30.3

Q ss_pred             CCCCccccccccccccccCCCCCCCccCCCCCC
Q psy15047         93 RHPRYRTKLCQSYHQDGFCPYGQRCYFIHEEKS  125 (165)
Q Consensus        93 ~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~  125 (165)
                      ++|+|||++|++|...|.|+||++|.|+|+..+
T Consensus         2 rhpkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCTTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCCCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            467899999999999999999999999999865

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.3e-11  Score=71.94  Aligned_cols=34  Identities=38%  Similarity=0.980  Sum_probs=31.5

Q ss_pred             CCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy15047         95 PRYRTKLCQSYHQDGFCPYGQRCYFIHEEKSVSS  128 (165)
Q Consensus        95 ~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~  128 (165)
                      .+|||++|++|...|.|++|++|.|+|+.+||+.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            3699999999998899999999999999999985

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.2e-07  Score=48.13  Aligned_cols=26  Identities=38%  Similarity=0.807  Sum_probs=22.2

Q ss_pred             CccccccccccCCCCCCCCCCccccCC
Q psy15047         59 FKTELCRLHDETGVCKFGTGCKFAHGA   85 (165)
Q Consensus        59 ~KT~lC~~y~~~G~C~~Gd~C~FaH~~   85 (165)
                      .|.++|+||+ +|.|.+|++|.|.|+.
T Consensus         4 kkkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhhe-eeeecCCcCcccccCC
Confidence            4678999997 8999999999999863

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.9e-05  Score=42.39  Aligned_cols=26  Identities=31%  Similarity=0.915  Sum_probs=23.0

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEE  123 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~  123 (165)
                      .+..+|++|. .|+|..|++|.|.|++
T Consensus         4 kkkelCKfYv-qGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYI-TGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhhe-eeeecCCcCcccccCC
Confidence            4567999998 8999999999999974

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=2.9e-05  Score=48.19  Aligned_cols=23  Identities=39%  Similarity=0.946  Sum_probs=20.1

Q ss_pred             ccccccccccCCCCCCCccCCCC
Q psy15047        101 LCQSYHQDGFCPYGQRCYFIHEE  123 (165)
Q Consensus       101 ~C~~f~~~G~C~~G~~C~F~H~~  123 (165)
                      +|++|++++.|..|+.|+|.|.+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69999988899999999999953

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00017  Score=44.66  Aligned_cols=23  Identities=39%  Similarity=0.847  Sum_probs=20.8

Q ss_pred             cccccccCCCCCCCCCCccccCC
Q psy15047         63 LCRLHDETGVCKFGTGCKFAHGA   85 (165)
Q Consensus        63 lC~~y~~~G~C~~Gd~C~FaH~~   85 (165)
                      +|+||.+++.|-.|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59999988899999999999954

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0005  Score=38.67  Aligned_cols=27  Identities=30%  Similarity=0.799  Sum_probs=22.3

Q ss_pred             ccccccccccccccCCCCCCCccCCCC
Q psy15047         97 YRTKLCQSYHQDGFCPYGQRCYFIHEE  123 (165)
Q Consensus        97 ~kt~~C~~f~~~G~C~~G~~C~F~H~~  123 (165)
                      -.+.+|..|.+.|+|+.|..|...|+.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCcC
Confidence            356789999889999999999888863

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.041  Score=30.57  Aligned_cols=29  Identities=24%  Similarity=0.539  Sum_probs=25.4

Q ss_pred             cCCccccccccccCCCCCCCCCCccccCC
Q psy15047         57 NLFKTELCRLHDETGVCKFGTGCKFAHGA   85 (165)
Q Consensus        57 ~~~KT~lC~~y~~~G~C~~Gd~C~FaH~~   85 (165)
                      ..-.+.+|..|...|.|+.|.+|.-.|++
T Consensus         9 ~~~~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1           9 RPHPTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CCCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             CCCccchhhhhhhccccCCCCCCcccCcC
Confidence            45678899999889999999999999974