Psyllid ID: psy15062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR
ccccccccccccHHHHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccEEEEcEEEEcEEEEccccccEEEccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccEEEEEEcccccEEEEEEEcccccccccccccEEccccccccccccccccccccccEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEccccEEEccccccccccccccEEEEEEEEc
cccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccEEEEEEcccEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHcccccHHHHHHHHHHcEEEEHccccEEEEEEEEccHHHHHcccEEEEcccccccccHHccccccccccccEEEEEEEEEcccccccccEEEEEEEccccccEEEEccccEEcccHHHcccccccccEEEEEEEcc
mspglngianagntCYINSVLQCLSNTPAFRNVllnedipihpdsksqGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTkkfdgnqqQDAQEFLLYLLAALNEeakvvpdqyngstysntsskqvgsFRALHYWEKFqtteasvfsdifvgqlrssvrcsnckrtSTVYEIFWelslpvppgggtlyecqlrssvrcsnckrtSTVYEIFWelslpvppgggtlYECLNKffngetlhntcqyckkqsDLVKlyeiqrlppVLILWFKRFssnftqkvtspikfpreglDMEYYISASgrrvesrytyDLCAVSnhigktalygHYTAYCRregtgrwylyddtvvspvdaqtVESAEAEHGAYILVYQRR
MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVpdqyngstysntsskqVGSFRALHYWEKFQTTEASVFSDIFVGQlrssvrcsnckRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFssnftqkvtspikfpreglDMEYYISASGRRVESRYTYDLCAVSnhigktalygHYTAYCRREGTGRWYLYDDTVVSPVDAQTVesaeaehgaYILVYQRR
MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQefllyllaalneeaKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR
******GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPD***QGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG*********QVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVY***
*SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDI*******S**QLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEA*******************************FQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGG***************CKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYIS*****VESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQ*V**AEAEHGAYILVYQRR
MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR
***GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQ*********SSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPP**************************************GGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
O57429357 Ubiquitin carboxyl-termin yes N/A 0.858 0.901 0.325 8e-49
O75604605 Ubiquitin carboxyl-termin no N/A 0.850 0.527 0.328 3e-45
O88623613 Ubiquitin carboxyl-termin yes N/A 0.858 0.525 0.325 5e-45
Q5U349618 Ubiquitin carboxyl-termin yes N/A 0.856 0.519 0.321 1e-42
Q2KHV7606 Ubiquitin carboxyl-termin no N/A 0.850 0.526 0.320 1e-40
P408181118 Ubiquitin carboxyl-termin no N/A 0.8 0.268 0.299 5e-39
Q80U871080 Ubiquitin carboxyl-termin no N/A 0.802 0.278 0.297 6e-39
Q9UK80565 Ubiquitin carboxyl-termin no N/A 0.864 0.573 0.302 4e-38
Q9QZL6566 Ubiquitin carboxyl-termin no N/A 0.869 0.575 0.293 1e-37
Q2KJ72565 Ubiquitin carboxyl-termin no N/A 0.866 0.575 0.295 8e-37
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2 PE=2 SV=1 Back     alignment and function desciption
 Score =  194 bits (494), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 191/381 (50%), Gaps = 59/381 (15%)

Query: 4   GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDI--PIHPDSKSQGQLVDALVNFMKM 61
           GL G+ N GNTC++NS+LQCLSNT   R+  L       ++ +S+ +  L+      +++
Sbjct: 17  GLTGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLNNNSRMRTALMSEFAKLIQL 76

Query: 62  MW-SSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAK--VVPDQYNG 118
           +W SS N  ++       ++ Y  +F G  QQDAQEFL +LL  L+ E    +V  + N 
Sbjct: 77  LWTSSPNDSVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHGEVNRVLVRPRANA 136

Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
            T  +    +    ++   W ++Q  E S  SD+FVGQL+SS+ CS C   ST ++ FW+
Sbjct: 137 DTLDHLPDDE----KSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWD 192

Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238
           LSLP+P  G                                    G  TL +CL  F   
Sbjct: 193 LSLPIPKKGY-----------------------------------GEVTLMDCLRLFTKE 217

Query: 239 ETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQ--KVTSPIKFPREG 292
           + L      TC  CK ++   K + IQ+ P +L+L  KRFS    +  K+T+ + FP + 
Sbjct: 218 DVLDGDEKPTCCRCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKD 277

Query: 293 LDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSP 352
           LD+  + S S         Y+L AVSNH G T + GHYTAYC+   +  W+ ++D+ V+P
Sbjct: 278 LDLREFASQSCNHA----VYNLYAVSNHSG-TTMGGHYTAYCKSPISSEWHSFNDSRVTP 332

Query: 353 VDAQTVESAEAEHGAYILVYQ 373
           + +  V S++    AY+L Y+
Sbjct: 333 MSSSHVRSSD----AYLLFYE 349
Hydrolase that deubiquitinates polyubiquitinated target proteins such as MDM2, MDM4 and CCND1. Possesses both ubiquitin-specific peptidase and isopeptidase activities.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2 Back     alignment and function description
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2 PE=1 SV=2 Back     alignment and function description
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus GN=Usp2 PE=1 SV=1 Back     alignment and function description
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2 SV=1 Back     alignment and function description
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1 Back     alignment and function description
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2 Back     alignment and function description
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21 PE=1 SV=1 Back     alignment and function description
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
345490133 823 PREDICTED: hypothetical protein LOC10011 0.866 0.394 0.344 6e-52
350424674 979 PREDICTED: hypothetical protein LOC10074 0.866 0.331 0.349 1e-51
340727179 977 PREDICTED: hypothetical protein LOC10064 0.866 0.332 0.349 1e-51
357604445 913 putative ubiquitin specific protease 41 0.858 0.352 0.353 1e-51
328784869 987 PREDICTED: hypothetical protein LOC40896 0.866 0.329 0.347 3e-51
380020720 1055 PREDICTED: uncharacterized protein LOC10 0.866 0.308 0.347 3e-51
91084663 764 PREDICTED: similar to ubiquitin specific 0.864 0.424 0.344 6e-51
196016423342 hypothetical protein TRIADDRAFT_33494 [T 0.861 0.944 0.324 8e-49
195389480 906 GJ23355 [Drosophila virilis] gi|19415149 0.848 0.350 0.318 1e-47
322801296 886 hypothetical protein SINV_10772 [Solenop 0.866 0.366 0.344 1e-47
>gi|345490133|ref|XP_001599439.2| PREDICTED: hypothetical protein LOC100114408 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 199/383 (51%), Gaps = 58/383 (15%)

Query: 4   GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNE----DIPIHPDSKSQGQLVDALVNFM 59
           GLNG+ N GNTC++NSV+QCLSNT      LLNE    DI     S  +G L+ A    +
Sbjct: 482 GLNGLRNIGNTCFMNSVIQCLSNTRPLLEYLLNEQYLTDINT-TTSSMKGALIKAFSQVI 540

Query: 60  KMMW-SSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG 118
           + +W + G+ V+NT ++   ++ +  +F G  QQDAQEFL YLL  L+E+   V  +   
Sbjct: 541 QELWENDGDHVVNTSSLKSQIQRFAPRFMGYSQQDAQEFLRYLLEGLHEDVNRVTVKPQ- 599

Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
             +++       S +A   W+++  +E S   D+FVGQLRSS+RC+ C   S   + FW+
Sbjct: 600 PIHTDIPDSYSDSMKAAESWKRYLRSEDSTIVDVFVGQLRSSLRCTVCDHVSVTLDPFWD 659

Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238
           LSLP+P   GT+                                     L +CL  F   
Sbjct: 660 LSLPIPSRSGTV------------------------------------RLNQCLEHFTRE 683

Query: 239 ETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFS--SNFTQKVTSPIKFPREG 292
           E L      TC  C+ +    K + IQ+ P +L++  KRFS    F  K++  + FP  G
Sbjct: 684 EVLDGDEKPTCSKCQMRRKCTKSFAIQKFPKILVIHLKRFSPMERFRGKLSVLVDFPLTG 743

Query: 293 LDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSP 352
           L++  + +    RV+   TY+L  V+NH G T   GHYTAYC+   +G W+ Y+D+ V+P
Sbjct: 744 LELSAFAAP---RVQG-CTYNLYGVANHSGTTH-SGHYTAYCKHPYSGEWHEYNDSRVTP 798

Query: 353 VDAQTVESAEAEHGAYILVYQRR 375
           V A++V S+E    AY+L Y+++
Sbjct: 799 VSARSVVSSE----AYVLFYEQQ 817

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350424674|ref|XP_003493875.1| PREDICTED: hypothetical protein LOC100741560 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340727179|ref|XP_003401926.1| PREDICTED: hypothetical protein LOC100649397 [Bombus terrestris] Back     alignment and taxonomy information
>gi|357604445|gb|EHJ64192.1| putative ubiquitin specific protease 41 [Danaus plexippus] Back     alignment and taxonomy information
>gi|328784869|ref|XP_392493.4| PREDICTED: hypothetical protein LOC408964 [Apis mellifera] Back     alignment and taxonomy information
>gi|380020720|ref|XP_003694227.1| PREDICTED: uncharacterized protein LOC100870505 [Apis florea] Back     alignment and taxonomy information
>gi|91084663|ref|XP_967750.1| PREDICTED: similar to ubiquitin specific protease 41 [Tribolium castaneum] gi|270008628|gb|EFA05076.1| hypothetical protein TcasGA2_TC015173 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|196016423|ref|XP_002118064.1| hypothetical protein TRIADDRAFT_33494 [Trichoplax adhaerens] gi|190579367|gb|EDV19464.1| hypothetical protein TRIADDRAFT_33494 [Trichoplax adhaerens] Back     alignment and taxonomy information
>gi|195389480|ref|XP_002053404.1| GJ23355 [Drosophila virilis] gi|194151490|gb|EDW66924.1| GJ23355 [Drosophila virilis] Back     alignment and taxonomy information
>gi|322801296|gb|EFZ21983.1| hypothetical protein SINV_10772 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
UNIPROTKB|Q9UK80565 USP21 "Ubiquitin carboxyl-term 0.458 0.304 0.362 1.7e-42
UNIPROTKB|F1MH36565 USP21 "Ubiquitin carboxyl-term 0.458 0.304 0.362 1.2e-41
UNIPROTKB|Q2KJ72565 USP21 "Ubiquitin carboxyl-term 0.458 0.304 0.362 2.4e-41
RGD|1588822565 Usp21 "ubiquitin specific pept 0.461 0.306 0.358 1.5e-40
UNIPROTKB|E2RGE7565 USP21 "Ubiquitin carboxyl-term 0.458 0.304 0.357 4.8e-40
MGI|MGI:1353665566 Usp21 "ubiquitin specific pept 0.458 0.303 0.357 4.9e-40
UNIPROTKB|E1BF70421 USP8 "Ubiquitin carboxyl-termi 0.466 0.415 0.368 1.2e-39
UNIPROTKB|F1S196565 USP21 "Ubiquitin carboxyl-term 0.458 0.304 0.352 1.2e-39
RGD|1304979416 Usp8 "ubiquitin specific pepti 0.466 0.420 0.378 6.5e-39
UNIPROTKB|A6QR55963 USP4 "Ubiquitin carboxyl-termi 0.370 0.144 0.387 6.6e-37
UNIPROTKB|Q9UK80 USP21 "Ubiquitin carboxyl-terminal hydrolase 21" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 267 (99.0 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
 Identities = 71/196 (36%), Positives = 106/196 (54%)

Query:   190 LYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPP---GGG--TLYECLNKFFNGETLHN- 243
             L+  QL+S ++C  C   ST +E+F +LSLP+P     GG  +L +C N F   E L + 
Sbjct:   373 LFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESE 432

Query:   244 ---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSN--FTQKVTSPIKFPREGLDMEYY 298
                 C  C++++   K   +QR P +L+L   RFS++    +K +  + FP + L +  +
Sbjct:   433 NAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDF 492

Query:   299 IS-ASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQT 357
              S  +G  V     Y L A+ NH G    YGHYTA CR + TG W++Y+D+ VSPV    
Sbjct:   493 ASDKAGSPV-----YQLYALCNHSGSVH-YGHYTALCRCQ-TG-WHVYNDSRVSPVSENQ 544

Query:   358 VESAEAEHGAYILVYQ 373
             V S+E     Y+L YQ
Sbjct:   545 VASSEG----YVLFYQ 556
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS;IDA;TAS
GO:0006464 "cellular protein modification process" evidence=NAS
GO:0008234 "cysteine-type peptidase activity" evidence=ISS;IMP
GO:0003713 "transcription coactivator activity" evidence=ISS
GO:0016578 "histone deubiquitination" evidence=ISS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS
GO:0019784 "NEDD8-specific protease activity" evidence=IDA
GO:0004843 "ubiquitin-specific protease activity" evidence=IDA
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|F1MH36 USP21 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ72 USP21 "Ubiquitin carboxyl-terminal hydrolase 21" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1588822 Usp21 "ubiquitin specific peptidase 21" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGE7 USP21 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1353665 Usp21 "ubiquitin specific peptidase 21" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF70 USP8 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S196 USP21 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1304979 Usp8 "ubiquitin specific peptidase 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6QR55 USP4 "Ubiquitin carboxyl-terminal hydrolase 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O57429UBP2_CHICK3, ., 4, ., 1, 9, ., 1, 20.32540.85860.9019yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.766
3rd Layer3.4.19.120.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 4e-70
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 8e-59
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 4e-55
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-52
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 1e-51
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 1e-43
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 1e-37
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 4e-35
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 3e-33
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 5e-32
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-31
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 1e-30
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 6e-26
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 9e-24
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 4e-23
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 2e-22
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-21
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-18
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 4e-17
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-14
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 1e-12
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 2e-09
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 4e-08
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 1e-05
cd02672268 cd02672, Peptidase_C19P, A subfamily of Peptidase 2e-05
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 5e-05
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 9e-05
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 5e-04
cd02670241 cd02670, Peptidase_C19N, A subfamily of Peptidase 8e-04
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information 
 Score =  222 bits (567), Expect = 4e-70
 Identities = 112/376 (29%), Positives = 161/376 (42%), Gaps = 69/376 (18%)

Query: 3   PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMM 62
            G  G+AN GNTCY+NSVLQ L + P  R+ LL     +     S  QL  AL +    +
Sbjct: 1   EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHAL 60

Query: 63  WS--SGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGST 120
            S  S N  ++ K  L AL   + +F G  QQDA EFLL+LL  L+E+            
Sbjct: 61  QSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHED------------ 108

Query: 121 YSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELS 180
                        +L   +       S+ + +F GQL S ++C  CK+ S+  E F +LS
Sbjct: 109 -----------LNSLKKRKSHAAENESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLS 157

Query: 181 LPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGET 240
           LP+             SSV          + E+  E                        
Sbjct: 158 LPIED----------SSSVLKLLTGNFLKLEELEKEEK---------------------- 185

Query: 241 LHNTCQYCKKQSDLVKLYEIQRLPPVLIL---WFKRFSSNFTQKVTSPIKFPREGLDMEY 297
               C  C  + + +K  +I RLPPVLI+    F+ F+    +K++  ++FP E LD+  
Sbjct: 186 --YYCPKCGGKQNAIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLE-LDLSS 242

Query: 298 YISASGRRVESRYT-YDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQ 356
           Y+       E   T Y+L AV  H G +   GHY AY ++    +W  +DD  VS V  +
Sbjct: 243 YLE-EELEGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEE 301

Query: 357 TVESAEAEHGAYILVY 372
            V  +     AYIL Y
Sbjct: 302 EVLRSS----AYILFY 313

Length = 313
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
KOG1865|consensus 545 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
KOG0944|consensus763 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1868|consensus653 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1866|consensus 944 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1867|consensus492 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
KOG1870|consensus842 100.0
KOG1873|consensus877 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
KOG1863|consensus 1093 100.0
KOG4598|consensus 1203 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1872|consensus473 100.0
KOG1864|consensus587 100.0
KOG1871|consensus420 100.0
KOG2026|consensus442 100.0
KOG1275|consensus 1118 99.87
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 99.26
KOG1887|consensus806 98.02
KOG3556|consensus724 97.94
KOG1864|consensus 587 97.43
PF08715320 Viral_protease: Papain like viral protease; InterP 96.67
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 95.38
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 83.63
>KOG1865|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.5e-61  Score=438.89  Aligned_cols=299  Identities=32%  Similarity=0.573  Sum_probs=269.9

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhhhc
Q psy15062          4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYT   83 (375)
Q Consensus         4 ~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~~~   83 (375)
                      -..||.|.|||||+|||||||.+.||+.++|++..+. ..+.....+++++|+..+.........+++|..|+.-|..+.
T Consensus       107 ~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs-~~C~~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~  185 (545)
T KOG1865|consen  107 VGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHS-RSCHRAKFCMLCTFQAHITRALHNPGHPISPSQILSNLRNIS  185 (545)
T ss_pred             CCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhh-hhccccCeeeehHHHHHHHHHhcCCCCccChHHHHHhhhhhc
Confidence            3689999999999999999999999999999987653 444467889999999999988888877999999999999999


Q ss_pred             cCCCCCCccchHHHHHHHHHHHHHHhc-cCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceEE
Q psy15062         84 KKFDGNQQQDAQEFLLYLLAALNEEAK-VVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVR  162 (375)
Q Consensus        84 ~~~~~~~QqDa~E~l~~ll~~L~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~  162 (375)
                      ..|..|+|+||||||.++++.++..+- .....                        ....+...+|.++|+|-+.+.++
T Consensus       186 ~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~------------------------~~~sq~ttlv~~iFGG~LrS~vk  241 (545)
T KOG1865|consen  186 AHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQV------------------------DPRSQDTTLVHQIFGGYLRSQIK  241 (545)
T ss_pred             ccccCCchhhHHHHHHHHHHHHHHhhcCCCccC------------------------Ccccccceehhhhhccchhhcee
Confidence            999999999999999999999998872 11000                        01123457899999999999999


Q ss_pred             ecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhccccccc
Q psy15062        163 CSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETLH  242 (375)
Q Consensus       163 C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~~  242 (375)
                      |..|.+++...|+...|.|.|....                                       +|+++|++|+..|.++
T Consensus       242 C~~C~~vS~tyE~~~dltvei~d~~---------------------------------------sl~~AL~qFt~~E~L~  282 (545)
T KOG1865|consen  242 CLHCKGVSDTYEPYLDLTLEIQDAS---------------------------------------SLQQALEQFTKPEKLD  282 (545)
T ss_pred             cccCCCcccccccccceEEEeccch---------------------------------------hHHHHHHHhhhHHhhC
Confidence            9999999999999999999998332                                       8999999999999997


Q ss_pred             c----cccccccccceeEEEEeccCCceEEEEEccccccccccccCcccCCCCCCCcccccccCCCCCCCceeeEEEEEe
Q psy15062        243 N----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVS  318 (375)
Q Consensus       243 ~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L~~vv  318 (375)
                      +    .|++|+++..+.|++.|.++|.||+|+|+||......||.++|.||++ |||.+|++.+.   .....|.|+|||
T Consensus       283 gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~-LDl~PyMS~~~---e~s~~Y~LYavl  358 (545)
T KOG1865|consen  283 GENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPET-LDLQPYMSQPN---EGSTVYKLYAVL  358 (545)
T ss_pred             CccccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCccc-ccccccccCCC---CCCceEEEEEEE
Confidence            7    899999999999999999999999999999999879999999999999 99999999553   467899999999


Q ss_pred             eeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062        319 NHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR  375 (375)
Q Consensus       319 ~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~  375 (375)
                      +|.|....+|||+||||. ..|.||.+||+.|+.++.+.|++..    ||||||.|+
T Consensus       359 VH~g~~~~~GHY~cYvks-~~g~Wy~~DDS~V~~~~~~~VLsq~----AYmLfY~R~  410 (545)
T KOG1865|consen  359 VHLGTSCHSGHYFCYVKS-QNGQWYKMDDSEVTQSSIESVLSQQ----AYILFYARK  410 (545)
T ss_pred             EeccccccCCceEEEEEc-CCCceEEccCceeeeccccceeccc----ceEEEEEee
Confidence            999999899999999999 5899999999999999999999998    999999984

>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944|consensus Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1868|consensus Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866|consensus Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1867|consensus Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870|consensus Back     alignment and domain information
>KOG1873|consensus Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>KOG4598|consensus Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1872|consensus Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>KOG1871|consensus Back     alignment and domain information
>KOG2026|consensus Back     alignment and domain information
>KOG1275|consensus Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1887|consensus Back     alignment and domain information
>KOG3556|consensus Back     alignment and domain information
>KOG1864|consensus Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 9e-41
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-40
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 1e-40
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-39
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 2e-39
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 9e-35
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 2e-33
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 1e-32
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 2e-32
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 2e-32
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 1e-18
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 3e-18
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 3e-18
2f1z_A522 Crystal Structure Of Hausp Length = 522 3e-07
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 3e-07
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 2e-06
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 2e-04
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 5e-04
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 178/384 (46%), Gaps = 65/384 (16%)
Query: 4   GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDI--PIHPDSKSQGQLVDALVNFMKM 61
           GL G+ N GNTC++NS+LQCLSNT   R+  L       +H  S +   LV+     ++ 
Sbjct: 8   GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 67
Query: 62  MW-SSGNLVLNTKAILLALRSYTKKFDGNQQQDAQXXXXXXXXXXXXXXKVVP--DQYNG 118
           +W SS N V++       ++ Y  +F G  QQDAQ                V    + N 
Sbjct: 68  IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 127
Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
               +    + G       W K+   E S   D+FVGQ                      
Sbjct: 128 ENLDHLPDDEKGR----QMWRKYLEREDSRIGDLFVGQ---------------------- 161
Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGG---GTLYECLNKF 235
                           L+SS+ C++C   STV++ FW+LSLP+   G    TL +C+  F
Sbjct: 162 ----------------LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLF 205
Query: 236 FNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFP 289
              + L      TC  C+ +   +K + IQR P +L+L  KRFS +   T K+T+ + FP
Sbjct: 206 TKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFP 265
Query: 290 REGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTV 349
              LD+  + S +         Y+L AVSNH G T + GHYTAYCR  GTG W+ ++D+ 
Sbjct: 266 LRDLDLREFASENTNHA----VYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSS 320
Query: 350 VSPVDAQTVESAEAEHGAYILVYQ 373
           V+P+ +  V +++    AY+L Y+
Sbjct: 321 VTPMSSSQVRTSD----AYLLFYE 340
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-99
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-95
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 3e-91
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 4e-85
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 3e-81
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 4e-79
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 2e-62
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 3e-59
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 4e-43
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-13
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 6e-41
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  298 bits (765), Expect = e-99
 Identities = 122/384 (31%), Positives = 184/384 (47%), Gaps = 57/384 (14%)

Query: 2   SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNED--IPIHPDSKSQGQLVDALVNFM 59
           + GL G+ N GNTC++NS+LQCLSNT   R+  L       +H  S +   LV+     +
Sbjct: 6   AQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLI 65

Query: 60  KMMWSSG-NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEE-AKVVPDQYN 117
           + +W+S  N V++       ++ Y  +F G  QQDAQEFL +LL  L+ E  +V     +
Sbjct: 66  QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKS 125

Query: 118 GSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFW 177
                +         +    W K+   E S   D+FVGQL+SS+ C++C   STV++ FW
Sbjct: 126 NPENLDHLPDDEKGRQM---WRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFW 182

Query: 178 ELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFN 237
           +LSLP+                                           TL +C+  F  
Sbjct: 183 DLSLPIAKR-----------------------------------GYPEVTLMDCMRLFTK 207

Query: 238 GETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFS--SNFTQKVTSPIKFPRE 291
            + L      TC  C+ +   +K + IQR P +L+L  KRFS     T K+T+ + FP  
Sbjct: 208 EDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLR 267

Query: 292 GLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVS 351
            LD+  + S +         Y+L AVSNH G T   GHYTAYCR  GTG W+ ++D+ V+
Sbjct: 268 DLDLREFASENTNH----AVYNLYAVSNHSGTTM-GGHYTAYCRSPGTGEWHTFNDSSVT 322

Query: 352 PVDAQTVESAEAEHGAYILVYQRR 375
           P+ +  V +++    AY+L Y+  
Sbjct: 323 PMSSSQVRTSD----AYLLFYELA 342
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 100.0
3mp2_A211 Non-structural protein 3; papain-like protease, TG 97.4
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 96.73
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 90.31
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.1e-66  Score=482.85  Aligned_cols=342  Identities=33%  Similarity=0.625  Sum_probs=278.2

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCC--CCC--CCCChhhHHHHHHHHHHHHhcCCCccccHHHHHH
Q psy15062          2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHP--DSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILL   77 (375)
Q Consensus         2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~--~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~   77 (375)
                      .+|++||.|+||||||||+||+|+++|+||++++.....  .+.  .......+..+|+.||++|+.+....++|..|..
T Consensus         5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~   84 (367)
T 2y6e_A            5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKT   84 (367)
T ss_dssp             CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHH
T ss_pred             CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence            689999999999999999999999999999999875432  111  1134568999999999999998888999999999


Q ss_pred             HHhhhccCCCCCCccchHHHHHHHHHHHHHHhccCC-CCC-CCCCCCCCCcccccchhhhhHHHHhhccCCCccccccce
Q psy15062         78 ALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVP-DQY-NGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVG  155 (375)
Q Consensus        78 ~l~~~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~  155 (375)
                      ++....+.|..++||||+|||.+||+.|+++++... .++ ...+..+.++    ...+...|........++|.++|+|
T Consensus        85 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~----~~~a~~~w~~~~~~~~s~i~~~F~G  160 (367)
T 2y6e_A           85 QVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPD----AVVAKEAWENHRLRNDSVIVDTFHG  160 (367)
T ss_dssp             HHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCH----HHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred             HHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCch----hHHHHHHHHHHHHhcCCccccccCc
Confidence            999999999999999999999999999999984332 222 2222222221    2245566777777788999999999


Q ss_pred             eeeceEEecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhh
Q psy15062        156 QLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKF  235 (375)
Q Consensus       156 ~~~~~~~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~  235 (375)
                      ++.+.++|..|+..+...++|..|+|+||.........        .           .+.. .....+..+|+++|+.|
T Consensus       161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~--------~-----------~~~~-~~~~~~~~sL~~~L~~f  220 (367)
T 2y6e_A          161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEG--------P-----------MLQP-QKKKKTTVALRDCIELF  220 (367)
T ss_dssp             EEEEEEECTTTCCEEEEEEEESSEEEECCC---------------------------------------CEEHHHHHHHH
T ss_pred             EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCccee--------e-----------eecc-ccccCCCCCHHHHHHHh
Confidence            99999999999999999999999999999754210000        0           0000 00011223899999999


Q ss_pred             cccccccc----cccccccccceeEEEEeccCCceEEEEEccccccc--cccccCcccCCCCCCCcccccccCCCCCCCc
Q psy15062        236 FNGETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF--TQKVTSPIKFPREGLDMEYYISASGRRVESR  309 (375)
Q Consensus       236 ~~~e~~~~----~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~--~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~  309 (375)
                      +..|.+++    +|++|+....+.++..|.++|++|+|||+||.++.  ..|+...|.||.+.|||++|+....   ...
T Consensus       221 ~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~---~~~  297 (367)
T 2y6e_A          221 TTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS---ARP  297 (367)
T ss_dssp             TSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS---SCC
T ss_pred             cccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC---CCC
Confidence            99999986    89999999999999999999999999999999875  6899999999973399999987653   345


Q ss_pred             eeeEEEEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhccccCCCceEEEEEEeC
Q psy15062        310 YTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAEAEHGAYILVYQRR  375 (375)
Q Consensus       310 ~~Y~L~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~~~~~~yll~Y~r~  375 (375)
                      ..|+|+|||+|.|.. ++|||+||+|.+.+++|++|||+.|+++++++|....    ||||||+|+
T Consensus       298 ~~Y~L~avv~H~G~~-~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~----aYiLfY~r~  358 (367)
T 2y6e_A          298 YVYDLIAVSNHYGAM-GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKA----AYVLFYQRR  358 (367)
T ss_dssp             CEEEEEEEEEEECSS-SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTT----EEEEEEEEC
T ss_pred             ceEEEEEEeecCCCC-CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCC----cEEEEEEEc
Confidence            799999999999985 9999999999966789999999999999999998766    999999996
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-57
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 1e-53
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 1e-49
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-43
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 9e-31
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  188 bits (478), Expect = 2e-57
 Identities = 113/382 (29%), Positives = 174/382 (45%), Gaps = 57/382 (14%)

Query: 3   PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLN----EDIPIHPDSKSQGQLVDALVNF 58
           P L G+ N GNTCY+NS+LQCL N P   +        +DI        +G++ +     
Sbjct: 13  PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 72

Query: 59  MKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG 118
           MK +W+     ++ K   + +     +F G  QQD+QE LL+L+  L+E+     ++   
Sbjct: 73  MKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRY 132

Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
              +N       +  A H W+K +    S+   +F GQ +S+V+C  C + S  +E F  
Sbjct: 133 KEENNDHLDDFKA--AEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMY 190

Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238
           LSLP+                                           TL +CL  F   
Sbjct: 191 LSLPLA-------------------------------------STSKCTLQDCLRLFSKE 213

Query: 239 ETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSN--FTQKVTSPIKFPREG 292
           E L +     C +C+ + D +K  EI +LPPVL++  KRFS +  + QK+ + + FP E 
Sbjct: 214 EKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLEN 273

Query: 293 LDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSP 352
           LD+  Y+        +   Y+L +VSNH G     GHYTAYC+     RW+ +DD  VS 
Sbjct: 274 LDLSQYVIGPK---NNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSD 329

Query: 353 VDAQTVESAEAEHGAYILVYQR 374
           +   +V+S+     AYIL Y  
Sbjct: 330 ISVSSVKSSA----AYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 90.24
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-58  Score=426.34  Aligned_cols=294  Identities=26%  Similarity=0.386  Sum_probs=251.2

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHccCCCCCCCCCCChhhHHHHHHHHHHHHhcCCCccccHHHHHHHHhh
Q psy15062          2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRS   81 (375)
Q Consensus         2 ~~~~~GL~N~gntCy~NsvLQ~L~~~p~~r~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~v~~~~~~~~l~~   81 (375)
                      .||++||.|+||||||||+||+|+++|+||++++....   .......++..+|+.+|..|+... ..+.|..+...+. 
T Consensus         3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~---~~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~~~-   77 (347)
T d1nbfa_           3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT---EGDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG-   77 (347)
T ss_dssp             SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCC---TTCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHTT-
T ss_pred             CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCc---cCCcccchHHHHHHHHHHHHhcCC-CCcChHHHHHhhc-
Confidence            58999999999999999999999999999999986543   233455789999999999999866 5678888877764 


Q ss_pred             hccCCCCCCccchHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcccccchhhhhHHHHhhccCCCccccccceeeeceE
Q psy15062         82 YTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSV  161 (375)
Q Consensus        82 ~~~~~~~~~QqDa~E~l~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~  161 (375)
                       ...|..+.||||+||+..||+.|++++...                               ...+.+.++|.|.+...+
T Consensus        78 -~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~~~~  125 (347)
T d1nbfa_          78 -WETLDSFMQHDVQELCRVLLDNVENKMKGT-------------------------------CVEGTIPKLFRGKMVSYI  125 (347)
T ss_dssp             -CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS-------------------------------TTTTHHHHHHCEEEEEEE
T ss_pred             -hhhcchHHHHHHHHHHHHHHHHHHHHHhhc-------------------------------cccccccceeceEEEEeE
Confidence             345778899999999999999999988422                               123568999999999999


Q ss_pred             EecCCCCcceeecCCeeccccCCCCCCCcceeeecccccccCCCCCCceeeeecccCCCCCCCCCCHHHHHhhhcccccc
Q psy15062        162 RCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL  241 (375)
Q Consensus       162 ~C~~C~~~~~~~~~~~~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~e~~  241 (375)
                      .|..|+..+...++|..|+|+++...                                       ++.++|..++..|.+
T Consensus       126 ~C~~C~~~s~~~e~f~~l~L~i~~~~---------------------------------------~~~~~l~~~~~~e~l  166 (347)
T d1nbfa_         126 QCKEVDYRSDRREDYYDIQLSIKGKK---------------------------------------NIFESFVDYVAVEQL  166 (347)
T ss_dssp             EESSSCCEEEEEEEESSEEEECTTCC---------------------------------------BHHHHHHHHTCCEEE
T ss_pred             EeCCccceeeeecccccccccccccc---------------------------------------chhhhHHhhcchhee
Confidence            99999999999999999999998764                                       899999999999988


Q ss_pred             cc---cccccccccceeEEEEeccCCceEEEEEccccccc----cccccCcccCCCCCCCcccccccCCCCCCCceeeEE
Q psy15062        242 HN---TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNF----TQKVTSPIKFPREGLDMEYYISASGRRVESRYTYDL  314 (375)
Q Consensus       242 ~~---~C~~C~~~~~~~~~~~~~~~P~~L~i~l~R~~~~~----~~k~~~~v~~p~~~l~l~~~~~~~~~~~~~~~~Y~L  314 (375)
                      ++   .|..|.....+.++..|.++|++|+|+|+||.++.    ..|+...|.||.+ |+|++++....  ......|+|
T Consensus       167 ~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~-Ldl~~~~~~~~--~~~~~~Y~L  243 (347)
T d1nbfa_         167 DGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQ-LPLDEFLQKTD--PKDPANYIL  243 (347)
T ss_dssp             CGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSE-EECGGGBSSCC--TTSCCEEEE
T ss_pred             ccccccccccCcceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeee-ecccccccccc--ccCccceee
Confidence            76   45455566778888999999999999999998764    6799999999999 99999987764  245678999


Q ss_pred             EEEeeeccCCCCCCeEEEEEEeCCCCcEEEecCCceeeeCchhhcccc-----------CCCceEEEEEEeC
Q psy15062        315 CAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQTVESAE-----------AEHGAYILVYQRR  375 (375)
Q Consensus       315 ~~vv~H~G~~~~~GHY~a~v~~~~~~~W~~~nD~~V~~~~~~~v~~~~-----------~~~~~yll~Y~r~  375 (375)
                      +|||+|.|.. ++|||+||+|.+.+++|++|||+.|+++++++|+...           ...+||||||+|+
T Consensus       244 ~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~  314 (347)
T d1nbfa_         244 HAVLVHSGDN-HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  314 (347)
T ss_dssp             EEEEEEEEET-TEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred             EEEEEecCCC-CCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEec
Confidence            9999999986 8999999999866789999999999999999997421           1246999999995
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure