Psyllid ID: psy15075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQENPCPTYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWKKIKKVKTLVS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEEEEccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEccHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcHHHHHHHccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHcccccccccEEEEEEccccEEccccccEEEEEEEEEEccccccHEEEEcccccc
Coil and Loop (DISEMBL)
ndswtsgsicsqlnpdVLKNIKDCFPDLQTQVKLKLLLSFfhiprrnmDEWKVELEEILEVATVDTEQWVSMVAELMKTypatmslnteigdqdpylieavgfngggthedlsrHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRqgsesssyssgsnnsqmlplECQYLNKSALISVVGQqssvikhftlkrkpKSAALRAELVQKSMDAASNmkkaaaptvpvrsrgmprkmtdttplkgipsrvpsggfrsptlssslsrpimsiprnpagrkdggikllditeQPLGYAQAKkkkkqenpcptygnvvtiklsesqeihplgdpvlvEHHFqmnyntgewkkIKKVKTLVS
Flexible Loop (DISEMBL)
ndswtsgsicsqLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQgsesssyssgsnnsqMLPLECQYLNKSALISVVGQQSSVIkhftlkrkpksaALRAELVQKSMDaasnmkkaaaptvpvrsrgmprkmtdttplkgipsrvpsggfrsptlssslsrpimsiprnpagrkdggikLLDITEQPLGYAQakkkkkqenpcptYGNVVTIKLSESQEIHPLGDPVLVEHHFQMnyntgewkkikkvktlvs
Low Complexity Region (SEG)
NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQgsesssyssgsnnsQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFrsptlssslsrpIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQENPCPTYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWKKIKKVKTLVS
Disordered region (IsUnstruct)
********ICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL*********************PLECQYLNKSALISVVGQQSSVIKHFTL*******************************************************************************************************************TYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWKKIKKV*****
Disordered Region (DISOPRED)
******GSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGF*****************LEEILEVATVDTEQWVSMVAELMKTYPATMSLNT**GEIVENKRIFSDLINDLRKLVK*****************MLPLECQYLNKSALISVVGQQSSVIKHFTLKR******************************************************************************************DITE***********************VVTIKLSES**IHPLGDPVLVEHHFQMNYNTGEWKKIKKVKT***
Disordered Region (DISEMBL)
********ICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV*****************QMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSM***************VRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSRPIMSIPRNPAGRKDGGIKLLDITEQPL*************PCPTYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWKKIKKVKTLVS
Disordered Region (DISPRO)
***WTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKK************************************************************GGIKLLDITEQPLGYAQAKKKKKQENPCPTYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWKKIKKVK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQENPCPTYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWKKIKKVKTLVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q86NP2	1251	Negative elongation facto	yes	N/A	0.526	0.163	0.643	3e-76
Q9H3P2	528	Negative elongation facto	yes	N/A	0.514	0.378	0.436	2e-37
Q8BG30	530	Negative elongation facto	yes	N/A	0.516	0.379	0.423	4e-37

>sp|Q86NP2|NELFA_DROME Negative elongation factor A OS=Drosophila melanogaster GN=Nelf-A PE=1 SV=2

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 174/219 (79%), Gaps = 14/219 (6%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI +  + + IF D++NDLRKL
Sbjct: 71  WKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRKL 130

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           V +            ++  MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR 
Sbjct: 131 VTKH-----------SDLGMLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTL-SSSL 295
           EL+ KS DA S++KKA+APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GFRS T+  ++ 
Sbjct: 180 ELLHKSADAQSSLKKASAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVPGNAA 239

Query: 296 SRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKK 334
            RP +S  R PAGRKDGGIKL++ TEQPLGYA AKK+K+
Sbjct: 240 QRPNLS--RTPAGRKDGGIKLIEFTEQPLGYAAAKKRKR 276

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. Has an essential role in postembryonic development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9H3P2|NELFA_HUMAN Negative elongation factor A OS=Homo sapiens GN=WHSC2 PE=1 SV=3

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 22/222 (9%)

Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
           K  L EI+++A++D++ WV MVA+++K++P T SLN E+ E   N     D++ +LR+ V
Sbjct: 72  KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPN---VQDILGELREKV 128

Query: 178 KRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                           S MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct: 129 GE-----------CEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177

Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSR 297
           L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P   FRSPT  S  S 
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAP---FRSPTAPSVFSP 234

Query: 298 PIMSIPRNPAG---RKDGGIKLLDITEQPLGYA--QAKKKKK 334
                P  P+    RK+ G+KLLDI+E  +  A  +AK+++K
Sbjct: 235 TGNRTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 276

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex. Probably required to interact with the RNA polymerase II complex.

Homo sapiens (taxid: 9606)

>sp|Q8BG30|NELFA_MOUSE Negative elongation factor A OS=Mus musculus GN=Whsc2 PE=1 SV=1

 Score =  155 bits (393), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 21/222 (9%)

Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
           K  L +I+++AT+D++ WV MVA+++K++P T SLN ++ E   N     D++ +LR+ V
Sbjct: 72  KAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPN---VQDILGELREKV 128

Query: 178 KRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                      S    S MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct: 129 -----------SECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177

Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSR 297
           L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P   FRSPT  S  S 
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAP---FRSPTTPSVFSP 234

Query: 298 PIMSIPRNPAG---RKDGGIKLLDITE-QPLGYAQAKKKKKQ 335
                P  P+    +K+ G+KLLDI+E   +G  +  K++++
Sbjct: 235 SGNRTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRK 276

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex. Probably required to interact with the RNA polymerase II complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
307173912	511	Negative elongation factor A [Camponotus	0.529	0.403	0.671	1e-77
347967560	1261	AGAP002290-PA [Anopheles gambiae str. PE	0.537	0.165	0.648	1e-77
322790733	530	hypothetical protein SINV_08154 [Solenop	0.532	0.390	0.668	4e-77
195399740	1296	GJ14299 [Drosophila virilis] gi|19414203	0.526	0.158	0.642	6e-76
195113921	1273	GI21939 [Drosophila mojavensis] gi|19391	0.526	0.161	0.642	7e-76
345498481	527	PREDICTED: negative elongation factor A-	0.519	0.383	0.669	9e-76
332016858	550	Negative elongation factor A [Acromyrmex	0.521	0.369	0.658	3e-75
242018005	546	Negative elongation factor A, putative [	0.524	0.373	0.637	4e-75
198450592	1258	GA19196 [Drosophila pseudoobscura pseudo	0.532	0.164	0.633	8e-75
195166156	1194	GL27324 [Drosophila persimilis] gi|19410	0.532	0.173	0.633	9e-75

>gi|307173912|gb|EFN64660.1| Negative elongation factor A [Camponotus floridanus]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/219 (67%), Positives = 180/219 (82%), Gaps = 13/219 (5%)

Query: 116 HWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRK 175
            W+VELEEI+EVA++D+E WVSM++E MKT+P+T SLNT+I ++ E++ IF +L+NDLRK
Sbjct: 51  QWRVELEEIIEVASLDSELWVSMLSEAMKTFPSTGSLNTDITDLDEHRPIFGELVNDLRK 110

Query: 176 LVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALR 235
           L+K+Q           N+  MLPLEC YLNK+ALISVVGQQ + +KHFTLKRKPKSAALR
Sbjct: 111 LLKKQ-----------NDPAMLPLECHYLNKTALISVVGQQPTPVKHFTLKRKPKSAALR 159

Query: 236 AELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSL 295
           AEL+QKS DAA+N+KK+ APTVPVRSRGMPRKMTDTTPLKGIPSRVP+ GFRSP+L+S+ 
Sbjct: 160 AELLQKSTDAANNLKKSTAPTVPVRSRGMPRKMTDTTPLKGIPSRVPTSGFRSPSLTSTS 219

Query: 296 SRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKK 334
                SI  +   RKDGGIKLLDI EQPLGYAQAKK+K+
Sbjct: 220 MSNRTSI--SSRIRKDGGIKLLDINEQPLGYAQAKKRKR 256

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967560|ref|XP_001687824.2| AGAP002290-PA [Anopheles gambiae str. PEST] gi|333466239|gb|EDO64811.2| AGAP002290-PA [Anopheles gambiae str. PEST]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/222 (64%), Positives = 176/222 (79%), Gaps = 13/222 (5%)

Query: 115 HHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLR 174
             WK ELEE++EVA +D+E WVSM+AE +KT P T SLNTEI +  E + IF+D++N+LR
Sbjct: 69  EEWKTELEEVIEVAGLDSELWVSMIAETIKTLPTTGSLNTEISDYEETRPIFTDMVNELR 128

Query: 175 KLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAAL 234
           +LV +             +  MLPLECQYLNKSAL+SVVGQQ++ +KHFTLKRKPKSAAL
Sbjct: 129 RLVVKNA-----------DLGMLPLECQYLNKSALVSVVGQQTTPVKHFTLKRKPKSAAL 177

Query: 235 RAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSS 294
           RAEL+QKS DA S +KK +APTVP+RSRG+PRKMTDTTPLKGIPSRVP+GGFRSP  +  
Sbjct: 178 RAELLQKSSDAQSCLKKISAPTVPLRSRGIPRKMTDTTPLKGIPSRVPTGGFRSPPTTPG 237

Query: 295 LSRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQE 336
            +RP MS  R PAGRKDGGIKLL+I EQPLGYA AKK+K+++
Sbjct: 238 QTRPTMS--RTPAGRKDGGIKLLEIGEQPLGYAAAKKRKREQ 277

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790733|gb|EFZ15477.1| hypothetical protein SINV_08154 [Solenopsis invicta]

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/220 (66%), Positives = 178/220 (80%), Gaps = 13/220 (5%)

Query: 115 HHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLR 174
             W+VELEEI+EVA++D+E WVSM++E MKT+P+T SLNT+I ++ E++ IF DL+NDLR
Sbjct: 69  EEWRVELEEIIEVASLDSELWVSMLSEAMKTFPSTGSLNTDITDLDEHRPIFGDLVNDLR 128

Query: 175 KLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAAL 234
           KL+K+Q           N+  MLPLEC YLNK+AL SVVGQQ + +KHFTLKRKPKSAAL
Sbjct: 129 KLLKKQ-----------NDPAMLPLECHYLNKTALTSVVGQQPTPVKHFTLKRKPKSAAL 177

Query: 235 RAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSS 294
           RAEL+QKS DAA+N+KK+ APTVPVRSRGMPRKMTDTTPLKGIPSRVP+ GFRSP+L+++
Sbjct: 178 RAELLQKSTDAANNLKKSTAPTVPVRSRGMPRKMTDTTPLKGIPSRVPTSGFRSPSLTNT 237

Query: 295 LSRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKK 334
                 SI      RKDGGIKLLDI EQPLGYAQAKK+KK
Sbjct: 238 PISNRTSISNR--IRKDGGIKLLDINEQPLGYAQAKKRKK 275

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399740|ref|XP_002058477.1| GJ14299 [Drosophila virilis] gi|194142037|gb|EDW58445.1| GJ14299 [Drosophila virilis]

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 140/218 (64%), Positives = 175/218 (80%), Gaps = 13/218 (5%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI +  + + IF+D++NDLRKL
Sbjct: 71  WKSELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFTDMVNDLRKL 130

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           V +            ++  MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR 
Sbjct: 131 VTKH-----------SDLGMLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLS 296
           EL+ KS DA S++KK++APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GFRSP++  +  
Sbjct: 180 ELLHKSADAQSSLKKSSAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSPSVPGNAQ 239

Query: 297 RPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKK 334
           RP +S  R PAGRKDGGIK+L+ TEQPLGYA AKK+K+
Sbjct: 240 RPNLS--RTPAGRKDGGIKILEFTEQPLGYAAAKKRKR 275

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113921|ref|XP_002001516.1| GI21939 [Drosophila mojavensis] gi|193918110|gb|EDW16977.1| GI21939 [Drosophila mojavensis]

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 140/218 (64%), Positives = 174/218 (79%), Gaps = 13/218 (5%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           WK ELEE++EVA +DTE WVSM+AE MKT+PAT SLNTEI +  + + IF+D++NDLRKL
Sbjct: 71  WKSELEEVIEVAGLDTELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFTDMVNDLRKL 130

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           V +            ++  MLPLECQYLNK+AL+SVVGQQ   +KHFTLKRKPKSA LR 
Sbjct: 131 VTKH-----------SDLGMLPLECQYLNKNALVSVVGQQPVPVKHFTLKRKPKSAQLRT 179

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLS 296
           EL+ KS DA S++KK++APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GFRSP++  +  
Sbjct: 180 ELLHKSADAQSSLKKSSAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSPSVPGNAQ 239

Query: 297 RPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKK 334
           RP +S  R PAGRKDGGIK+L+ TEQPLGYA AKK+K+
Sbjct: 240 RPNLS--RTPAGRKDGGIKILEFTEQPLGYAAAKKRKR 275

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498481|ref|XP_001601394.2| PREDICTED: negative elongation factor A-like [Nasonia vitripennis]

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 148/221 (66%), Positives = 177/221 (80%), Gaps = 19/221 (8%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           W+VELEEI+EVA++D+E WVSM++E MKT+P+T SLNT+I ++ E++ IF DL+NDLRKL
Sbjct: 71  WRVELEEIIEVASLDSELWVSMLSEAMKTFPSTGSLNTDISDLDEHRPIFGDLVNDLRKL 130

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           +K+Q           N+  MLPLEC YLNK+AL SVVG   S  KHFTLKRKPKSAALR+
Sbjct: 131 LKKQ-----------NDPAMLPLECHYLNKTALTSVVGNLPSPTKHFTLKRKPKSAALRS 179

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLS 296
           EL QKS+DAASNMKK  APTVPVRSRGMPRKMTDTTPLKGIPSRVP+ GFRSP L+SS  
Sbjct: 180 ELHQKSLDAASNMKKNTAPTVPVRSRGMPRKMTDTTPLKGIPSRVPTSGFRSPALTSS-- 237

Query: 297 RPIMSIPRNPAG---RKDGGIKLLDITEQPLGYAQAKKKKK 334
            P+ +  R P     RKDGGIKLLDITEQPLG+AQAK++K+
Sbjct: 238 -PMTN--RTPIASRIRKDGGIKLLDITEQPLGHAQAKRRKR 275

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016858|gb|EGI57667.1| Negative elongation factor A [Acromyrmex echinatior]

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 143/217 (65%), Positives = 174/217 (80%), Gaps = 14/217 (6%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           W+ ELEEI+EVA VD+E WVSM++E MKT+P+T SLNT+I ++ E++ IF +L+NDLRKL
Sbjct: 92  WRAELEEIIEVAAVDSELWVSMLSEAMKTFPSTGSLNTDITDLDEHRPIFGELVNDLRKL 151

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           +K+Q           N+  MLPLEC YLNK+AL SVVGQQ + +KHFTLKRKPKSAALRA
Sbjct: 152 LKKQ-----------NDPAMLPLECHYLNKTALTSVVGQQPTPVKHFTLKRKPKSAALRA 200

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLS 296
           EL+QKS DAASN+KK+ APTVPVRSRGMPRKMTDTTPLKGIPSRVP+ GFRSP+L+++  
Sbjct: 201 ELLQKSTDAASNLKKSTAPTVPVRSRGMPRKMTDTTPLKGIPSRVPTSGFRSPSLTNTSM 260

Query: 297 RPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKK 333
               SI R    RKDGGIKLLDITEQP+G+   K+KK
Sbjct: 261 SNRTSISR---IRKDGGIKLLDITEQPMGFVAKKRKK 294

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018005|ref|XP_002429474.1| Negative elongation factor A, putative [Pediculus humanus corporis] gi|212514406|gb|EEB16736.1| Negative elongation factor A, putative [Pediculus humanus corporis]

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/226 (63%), Positives = 178/226 (78%), Gaps = 22/226 (9%)

Query: 116 HWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRK 175
            W+VELEEILEVA +D+E WVSM+AE+MKT P + SLN++I EI ENKRIFSDL+NDL+K
Sbjct: 70  EWRVELEEILEVAQMDSEPWVSMLAEIMKTLPGSGSLNSDIREIEENKRIFSDLVNDLKK 129

Query: 176 LVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALR 235
           LVK++            +  MLPLEC YL+K AL+S+VGQQ + +KHFTLKRKPKSAALR
Sbjct: 130 LVKKKA-----------DLGMLPLECHYLSKPALLSLVGQQPAQVKHFTLKRKPKSAALR 178

Query: 236 AELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSL 295
           AEL+QKS D  +++KK  APT+P+RSRGMPRK+TDTTPLKGIPSRVP+GGFRSP L+++ 
Sbjct: 179 AELLQKSTDVQNSVKKGPAPTIPLRSRGMPRKVTDTTPLKGIPSRVPTGGFRSPPLTNT- 237

Query: 296 SRPIMSIPRNPAG-----RKDGGIKLLDITEQPLGYAQAKKKKKQE 336
                S+ R P G     RKDGGIKLLDI EQP+GYAQAKK+K+ +
Sbjct: 238 -----SMSRTPLGKSVMKRKDGGIKLLDINEQPMGYAQAKKRKRMQ 278

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450592|ref|XP_001358053.2| GA19196 [Drosophila pseudoobscura pseudoobscura] gi|198131102|gb|EAL27190.2| GA19196 [Drosophila pseudoobscura pseudoobscura]

 Score =  286 bits (733), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 177/221 (80%), Gaps = 14/221 (6%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI +  + + IF+D++NDLRKL
Sbjct: 71  WKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFTDMVNDLRKL 130

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           V +            ++  MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR 
Sbjct: 131 VNKH-----------SDLGMLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTL-SSSL 295
           EL+ KS DA S++KK +APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GFRS T+ +++ 
Sbjct: 180 ELLHKSADAQSSLKKGSAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVPANAA 239

Query: 296 SRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQE 336
            RP +S  R PAGRKDGGIKL++ TEQPLGYA AKK+K+++
Sbjct: 240 QRPNLS--RTPAGRKDGGIKLIEFTEQPLGYAAAKKRKREQ 278

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195166156|ref|XP_002023901.1| GL27324 [Drosophila persimilis] gi|194106061|gb|EDW28104.1| GL27324 [Drosophila persimilis]

 Score =  286 bits (733), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 177/221 (80%), Gaps = 14/221 (6%)

Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
           WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI +  + + IF+D++NDLRKL
Sbjct: 71  WKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFTDMVNDLRKL 130

Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
           V +            ++  MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR 
Sbjct: 131 VNKH-----------SDLGMLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179

Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTL-SSSL 295
           EL+ KS DA S++KK +APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GFRS T+ +++ 
Sbjct: 180 ELLHKSADAQSSLKKGSAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVPANAA 239

Query: 296 SRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQE 336
            RP +S  R PAGRKDGGIKL++ TEQPLGYA AKK+K+++
Sbjct: 240 QRPNLS--RTPAGRKDGGIKLIEFTEQPLGYAAAKKRKREQ 278

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
FB|FBgn0038872	1251	Nelf-A "Negative elongation fa	0.534	0.166	0.613	2.5e-73
ZFIN|ZDB-GENE-030131-6400	542	nelfa "negative elongation fac	0.519	0.372	0.420	7.7e-48
MGI|MGI:1346098	530	Nelfa "negative elongation fac	0.521	0.383	0.392	7.6e-46
UNIPROTKB|E2RCC3	532	WHSC2 "Uncharacterized protein	0.521	0.381	0.401	1.6e-45
UNIPROTKB|F1S8S1	462	WHSC2 "Uncharacterized protein	0.521	0.439	0.401	1.6e-45
RGD|1305556	530	Nelfa "negative elongation fac	0.521	0.383	0.392	1.6e-45
UNIPROTKB|Q9H3P2	528	NELFA "Negative elongation fac	0.521	0.384	0.401	4.1e-45
UNIPROTKB|H0Y3X6	532	NELFA "Protein NELFA" [Homo sa	0.521	0.381	0.401	4.1e-45
UNIPROTKB|F1NCM6	539	WHSC2 "Uncharacterized protein	0.521	0.376	0.383	3.8e-43
UNIPROTKB|B3KSP0	393	NELFA "cDNA FLJ36721 fis, clon	0.357	0.353	0.453	1.3e-36

FB|FBgn0038872 Nelf-A "Negative elongation factor A" [Drosophila melanogaster (taxid:7227)]

 Score = 677 (243.4 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 135/220 (61%), Positives = 166/220 (75%)

Query:   117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
             WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI +  + + IF D++NDLRKL
Sbjct:    71 WKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRKL 130

Query:   177 VKRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
             V +                MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR 
Sbjct:   131 VTKHSDLG-----------MLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179

Query:   237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXX 296
             EL+ KS DA S++KKA+APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GF          
Sbjct:   180 ELLHKSADAQSSLKKASAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVPGNAA 239

Query:   297 XXIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQE 336
                 ++ R PAGRKDGGIKL++ TEQPLGYA AKK+K+++
Sbjct:   240 QR-PNLSRTPAGRKDGGIKLIEFTEQPLGYAAAKKRKREQ 278

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=ISS

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0032021 "NELF complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-030131-6400 nelfa "negative elongation factor complex member A" [Danio rerio (taxid:7955)]

 Score = 378 (138.1 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 92/219 (42%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L EI+++ATVD+E WV MVA+++K++P T SLN ++ E  +N  +  D++ +LR+ V
Sbjct:    72 KEALSEIIQLATVDSEPWVLMVADILKSFPETGSLNLDLEE--QNPNV-QDILGELREKV 128

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNKSAL ++VG  +  IKHF LKRKPKSA LRAE
Sbjct:   129 NECEAST-----------MLPLECQYLNKSALTTLVGPLTPPIKHFQLKRKPKSATLRAE 177

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +KK A      + RG+ +K+  TTPLKGIP + P               
Sbjct:   178 LLQKSTETAQQLKKTAGVPFHSKGRGLVKKIDTTTPLKGIP-KAPFRSPTTPSMFSPPSN 236

Query:   298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
                  P     RK+ G+KLLDI+E  +  A  +AK+++K
Sbjct:   237 RTPIAPARTPLRKERGVKLLDISELDMVGAGREAKRRRK 275

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

MGI|MGI:1346098 Nelfa "negative elongation factor complex member A, Whsc2" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 86/219 (39%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L +I+++AT+D++ WV MVA+++K++P T SLN ++ E  +N  +  D++ +LR+ V
Sbjct:    72 KAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 128

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:   129 SECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P               
Sbjct:   178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPSGN 237

Query:   298 XIMSIPRNPAGRKDGGIKLLDITE-QPLGYA-QAKKKKK 334
                  P     +K+ G+KLLDI+E   +G   +AK+++K
Sbjct:   238 RTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRK 276

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=ISO

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|E2RCC3 WHSC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 374 (136.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 88/219 (40%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L EI+++AT+D++ WV MVA+++K++P T SLN ++ E  +N  +  D++ +LR+ V
Sbjct:    72 KGALAEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 128

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:   129 NECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P               
Sbjct:   178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPAGN 237

Query:   298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
                  P     RK+ G+KLLDI+E  +  A  +AK+++K
Sbjct:   238 RTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRK 276

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

UNIPROTKB|F1S8S1 WHSC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 374 (136.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 88/219 (40%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L EI+++AT+D++ WV MVA+++K++P T SLN ++ E  +N  +  D++ +LR+ V
Sbjct:     2 KGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 58

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:    59 NECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 107

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P               
Sbjct:   108 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGN 167

Query:   298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
                  P     RK+ G+KLLDI+E  +  A  +AK+++K
Sbjct:   168 RTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRK 206

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

RGD|1305556 Nelfa "negative elongation factor complex member A" [Rattus norvegicus (taxid:10116)]

 Score = 366 (133.9 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 86/219 (39%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L +I+++AT+D++ WV MVA+++K++P T SLN ++ E  +N  +  D++ +LR+ V
Sbjct:    72 KGALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 128

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:   129 SECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P               
Sbjct:   178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPSGN 237

Query:   298 XIMSIPRNPAGRKDGGIKLLDITE-QPLGYA-QAKKKKK 334
                  P     +K+ G+KLLDI+E   +G   +AK+++K
Sbjct:   238 RTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRK 276

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0032021 "NELF complex" evidence=IEA;ISO

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA;ISO

UNIPROTKB|Q9H3P2 NELFA "Negative elongation factor A" [Homo sapiens (taxid:9606)]

 Score = 370 (135.3 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 88/219 (40%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L EI+++A++D++ WV MVA+++K++P T SLN E+ E  +N  +  D++ +LR+ V
Sbjct:    72 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKV 128

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:   129 GECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P               
Sbjct:   178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGN 237

Query:   298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
                  P     RK+ G+KLLDI+E  +  A  +AK+++K
Sbjct:   238 RTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 276

GO:0003682 "chromatin binding" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0032021 "NELF complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H0Y3X6 NELFA "Protein NELFA" [Homo sapiens (taxid:9606)]

 Score = 370 (135.3 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 88/219 (40%), Positives = 128/219 (58%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L EI+++A++D++ WV MVA+++K++P T SLN E+ E  +N  +  D++ +LR+ V
Sbjct:    76 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKV 132

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:   133 GECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 181

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+QKS + A  +K++A      + RG+ RKM  TTPLKGIP + P               
Sbjct:   182 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGN 241

Query:   298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
                  P     RK+ G+KLLDI+E  +  A  +AK+++K
Sbjct:   242 RTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 280

GO:0032021 "NELF complex" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1NCM6 WHSC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 354 (129.7 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
 Identities = 84/219 (38%), Positives = 125/219 (57%)

Query:   118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
             K  L EI+++AT+D++ WV MVA+++K++P T SLN ++ E  +N  +  D++ +LR+ V
Sbjct:    86 KGALTEIVQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 142

Query:   178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
                               MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAE
Sbjct:   143 SEGETSA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 191

Query:   238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
             L+ KS + A  +KK A      + RG+ +K+  TTPLKGIP + P               
Sbjct:   192 LLLKSTETAQQLKKTAGVPFHAKGRGLVKKIDTTTPLKGIPKQAPFRSTSAPSVFNPSGN 251

Query:   298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
                  P     RK+ G+KLL+ +E  +  A  +AK+++K
Sbjct:   252 RNPIPPSRTPLRKERGVKLLEFSELDMVGAGREAKRRRK 290

GO:0032021 "NELF complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|B3KSP0 NELFA "cDNA FLJ36721 fis, clone UTERU2011287, highly similar to Negative elongation factor A" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 64/141 (45%), Positives = 85/141 (60%)

Query:   196 MLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAP 255
             MLPLECQYLNK+AL ++ G  +  +KHF LKRKPKSA LRAEL+QKS + A  +K++A  
Sbjct:     1 MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGV 60

Query:   256 TVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXXXIMSIPRNPAGRKDGGIK 315
                 + RG+ RKM  TTPLKGIP + P                    P     RK+ G+K
Sbjct:    61 PFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGNRTPIPPSRTLLRKERGVK 120

Query:   316 LLDITEQPLGYA--QAKKKKK 334
             LLDI+E  +  A  +AK+++K
Sbjct:   121 LLDISELDMVGAGREAKRRRK 141

GO:0032021 "NELF complex" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86NP2	NELFA_DROME	No assigned EC number	0.6438	0.5269	0.1638	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PRK10597	81	DNA damage-inducible protein I; Provisional	80.51

>PRK10597 DNA damage-inducible protein I; Provisional

Probab=80.51  E-value=0.64  Score=38.70  Aligned_cols=59  Identities=24%  Similarity=0.397  Sum_probs=46.6

Q ss_pred             cccccCCHHHHHHHHhhcCCCchhHHHHHH----hhccCCCcccHHHHHHHHHHHHHHhhcChhHHH
Q psy15075          8 SICSQLNPDVLKNIKDCFPDLQTQVKLKLL----LSFFHIPRRNMDEWKVELEEILEVATVDTEQWV   70 (389)
Q Consensus         8 siaslLnkdvL~~I~~cF~~Lst~VKLKLL----LSFLhL~rrl~eE~K~eLeeILqlA~~DsDeWV   70 (389)
                      .+-..|..|+.+.|...|+++...|++|.-    ++.+..++    +-|+.|++|||-.=.|+|+|.
T Consensus        16 ga~~AL~~EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k----~dK~~i~eiLqE~we~AD~Wl   78 (81)
T PRK10597         16 GAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATK----EDKDRISEILQETWESADDWF   78 (81)
T ss_pred             hHHHHHHHHHHHHHHhhCCCCCccEEEeecCCCceEecCCCc----chHHHHHHHHHHHHhChhhhh
Confidence            344568899999999999999977888755    33334434    359999999999999999996

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1ghha_	81	DNA damage-inducible protein DinI {Escherichia col	82.4

>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: DNA damage-inducible protein DinI
superfamily: DNA damage-inducible protein DinI
family: DNA damage-inducible protein DinI
domain: DNA damage-inducible protein DinI
species: Escherichia coli [TaxId: 562]

Probab=82.40  E-value=0.085  Score=40.82  Aligned_cols=62  Identities=19%  Similarity=0.329  Sum_probs=46.2

Q ss_pred             cccccCCHHHHHHHHhhcCCCchhHHHHHHhhccCCC-cccHHHHHHHHHHHHHHhhcChhHHH
Q psy15075          8 SICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIP-RRNMDEWKVELEEILEVATVDTEQWV   70 (389)
Q Consensus         8 siaslLnkdvL~~I~~cF~~Lst~VKLKLLLSFLhL~-rrl~eE~K~eLeeILqlA~~DsDeWV   70 (389)
                      .+-..|..|+.+.|...|++.+..|++|.--+- .|+ -....+-|+.|++|||-.=.|+|+|.
T Consensus        16 ga~~aL~~EL~kRl~~~fpD~~~~v~Vr~~sa~-~lsv~g~~k~dK~~i~~iLqE~wE~AD~W~   78 (81)
T d1ghha_          16 GAIDALAGELSRRIQYAFPDNEGHVSVRYAAAN-NLSVIGATKEDKQRISEILQETWESADDWF   78 (81)
T ss_dssp             THHHHHHHHHHHHHHHHCSSSCCEEEEEEESSC-EEEEESCCHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             hHHHHHHHHHHHHHHhhCCCCcceEEEeecCCC-cceecCCChhhHHHHHHHHHHHHhChHhhh
Confidence            344567889999999999998888888854221 111 11234568999999999999999995