Psyllid ID: psy15092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
PSPNFETPVDGNKEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEccEEEcccccccccEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccEEEEEEccccEEEcccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEcEEcEccccccccccccccEEccccccEEEEEEEEcccccccccccccEEEEEEccccccccccEcEEEccEEEcHHHcccccEEEccEEEccEEEcEccccEcccccEEEEHHHcccccEEEcccccEEEEccccccccHHHHcccccHHHHHHHHccccccccccccccccccEEEEEEcccccEEEEccccEEEEccc
Coil and Loop (DISEMBL)
pspnfetpvdgnkekeyehnsiydeksakrnipdveskteentthikeeenvpriekstvenipdvqkkkehvppvkkyieendvsrqscerkplvvkfgdlgwdqwiiepqsfqsyycsgkcsfpipkrkplvvkfgdlgwdqwiiepqsfqsyycsgkcsfpipkalapsshAYLQSAMYlvsgtpgpccvpetltplrvlyqespyITVLRYFQDMRVESCG
Flexible Loop (DISEMBL)
pspnfetpvdgnkekeyehnsiydeksakrnipdveskteentthikeeenvpriekstvenipdvqkkkehvppvkkyieendvsrqscerKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Low Complexity Region (SEG)
PSPNFETPVDGNKEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Disordered region (IsUnstruct)
******************************************************************************************ERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDM******
Disordered Region (DISOPRED)
***********************************************************************************************************************************PLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Disordered Region (DISEMBL)
**********GNKEKEYEHNSIYDEKSAKRNIPD*************EEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Disordered Region (DISPRO)
*****ET*****KEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQ*KKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PSPNFETPVDGNKEKEYEHNSIYDEKSAKRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
P49002	468	Bone morphogenetic protei	yes	N/A	0.426	0.205	0.494	2e-23
Q7T2X7	458	Bone morphogenetic protei	N/A	N/A	0.426	0.209	0.494	3e-23
P22444	475	Bone morphogenetic protei	yes	N/A	0.426	0.202	0.494	3e-23
P12645	472	Bone morphogenetic protei	yes	N/A	0.426	0.203	0.494	4e-23
Q8BHE5	468	Bone morphogenetic protei	yes	N/A	0.426	0.205	0.484	4e-23
Q08DX6	478	Bone morphogenetic protei	no	N/A	0.426	0.200	0.474	2e-22
P55108	476	Bone morphogenetic protei	no	N/A	0.426	0.201	0.464	5e-22
P97737	476	Bone morphogenetic protei	no	N/A	0.426	0.201	0.464	6e-22
Q7T2X6	443	Bone morphogenetic protei	N/A	N/A	0.426	0.216	0.454	1e-21
P55107	478	Bone morphogenetic protei	no	N/A	0.426	0.200	0.444	2e-21

>sp|P49002|BMP3_RAT Bone morphogenetic protein 3 OS=Rattus norvegicus GN=Bmp3 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +VSG
Sbjct: 368 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVSG 427

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M V+SC 
Sbjct: 428 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVDSCA 466

Negatively regulates bone density. Antagonizes the ability of certain osteogenic BMPs to induce osteoprogenitor differentitation and ossification.
Rattus norvegicus (taxid: 10116)

>sp|Q7T2X7|BMP3_XENLA Bone morphogenetic protein 3 OS=Xenopus laevis GN=bmp3 PE=1 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G
Sbjct: 358 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 417

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M VESC 
Sbjct: 418 IPEPCCVPEKMSSLSILFLDENKNVVLKVYPNMTVESCA 456

Dorsalizing factor. Antagonizes mesoderm formation by ventralizing BMPs.

Xenopus laevis (taxid: 8355)

>sp|P22444|BMP3_BOVIN Bone morphogenetic protein 3 OS=Bos taurus GN=BMP3 PE=1 SV=2

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G
Sbjct: 375 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 434

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M VESC 
Sbjct: 435 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCA 473

Induces cartilage and bone formation.

Bos taurus (taxid: 9913)

>sp|P12645|BMP3_HUMAN Bone morphogenetic protein 3 OS=Homo sapiens GN=BMP3 PE=1 SV=2

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G
Sbjct: 372 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 431

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M VESC 
Sbjct: 432 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCA 470

Negatively regulates bone density. Antagonizes the ability of certain osteogenic BMPs to induce osteoprogenitor differentitation and ossification.

Homo sapiens (taxid: 9606)

>sp|Q8BHE5|BMP3_MOUSE Bone morphogenetic protein 3 OS=Mus musculus GN=Bmp3 PE=1 SV=1

 Score =  108 bits (269), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF ++YCSG C FP+PK+L PS+HA +QS   A+ +VSG
Sbjct: 368 RRYLKVDFADIGWSEWIISPKSFDAFYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVSG 427

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M V+SC 
Sbjct: 428 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVDSCA 466

Negatively regulates bone density. Antagonizes the ability of certain osteogenic BMPs to induce osteoprogenitor differentitation and ossification.

Mus musculus (taxid: 10090)

>sp|Q08DX6|BMP3B_BOVIN Bone morphogenetic protein 3B OS=Bos taurus GN=GDF10 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 68/99 (68%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW++WII P+SF +YYCSG C FP+PK + PS+HA +QS   A+ +V G
Sbjct: 378 RRYLKVDFADIGWNEWIISPKSFDAYYCSGACEFPMPKMVRPSNHATIQSIVRAVGIVPG 437

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ ++ L VL+ +     VL+ + +M VE+C 
Sbjct: 438 IPEPCCVPDKMSSLGVLFLDENRNVVLKVYPNMSVETCA 476

Bos taurus (taxid: 9913)

>sp|P55108|BMP3B_RAT Bone morphogenetic protein 3B OS=Rattus norvegicus GN=Gdf10 PE=2 SV=1

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW++WII P+SF +YYC+G C FP+PK + PS+HA +QS   A+ +V G
Sbjct: 376 RRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFPMPKIVRPSNHATIQSIVRAVGIVPG 435

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ +  L VL+ +     VL+ + +M VE+C 
Sbjct: 436 IPEPCCVPDKMNSLGVLFLDENRNVVLKVYPNMSVETCA 474

Rattus norvegicus (taxid: 10116)

>sp|P97737|BMP3B_MOUSE Bone morphogenetic protein 3B OS=Mus musculus GN=Gdf10 PE=2 SV=2

 Score =  104 bits (259), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW++WII P+SF +YYC+G C FP+PK + PS+HA +QS   A+ +V G
Sbjct: 376 RRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFPMPKIVRPSNHATIQSIVRAVGIVPG 435

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ +  L VL+ +     VL+ + +M VE+C 
Sbjct: 436 IPEPCCVPDKMNSLGVLFLDENRNAVLKVYPNMSVETCA 474

Mus musculus (taxid: 10090)

>sp|Q7T2X6|BMP3B_XENLA Bone morphogenetic protein 3B OS=Xenopus laevis GN=gdf10 PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+ K + PS+HA +QS   A+ ++ G
Sbjct: 343 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACEFPMAKVVRPSNHATIQSIVKAVGIIPG 402

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P+ +  L VL+ +     VL+ + +M VESC 
Sbjct: 403 VPEPCCTPDMMNSLSVLFLDEGRNMVLKVYPNMSVESCS 441

Dorsalizing factor. Antagonizes mesoderm formation by nodal-like proteins and ventralizing BMPs. Cooperates with cer1 to promote embryonic head formation.

Xenopus laevis (taxid: 8355)

>sp|P55107|BMP3B_HUMAN Bone morphogenetic protein 3B OS=Homo sapiens GN=GDF10 PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW++WII P+SF +YYC+G C FP+PK + PS+HA +QS   A+ ++ G
Sbjct: 378 RRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFPMPKIVRPSNHATIQSIVRAVGIIPG 437

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ +  L VL+ +     VL+ + +M V++C 
Sbjct: 438 IPEPCCVPDKMNSLGVLFLDENRNVVLKVYPNMSVDTCA 476

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
327273000	683	PREDICTED: bone morphogenetic protein 3-	0.426	0.140	0.515	4e-23
410901407	460	PREDICTED: bone morphogenetic protein 3B	0.422	0.206	0.489	4e-23
47228856	455	unnamed protein product [Tetraodon nigro	0.422	0.208	0.479	9e-23
390336952	541	PREDICTED: bone morphogenetic protein 3-	0.426	0.177	0.474	2e-22
348507198	466	PREDICTED: bone morphogenetic protein 3B	0.422	0.203	0.469	2e-22
374722817	463	GDF10-like protein [Osmerus mordax]	0.813	0.395	0.3	4e-22
326918658	419	PREDICTED: bone morphogenetic protein 3-	0.426	0.229	0.505	5e-22
957226	360	BMP-3 [Rattus sp.]	0.426	0.266	0.494	5e-22
77736633	462	bone morphogenetic protein 3 precursor [	0.426	0.207	0.505	6e-22
194718235	453	bone morphogenetic protein 3/3b [Branchi	0.426	0.211	0.474	6e-22

>gi|327273000|ref|XP_003221271.1| PREDICTED: bone morphogenetic protein 3-like, partial [Anolis carolinensis]

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW  WII P+SF +YYCSG+C FPIPKAL PS+HA +QS   A+ +VSG
Sbjct: 583 RRYLKVDFADIGWSDWIISPKSFDAYYCSGECQFPIPKALKPSNHATIQSIVRAVGVVSG 642

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ ++ L +L+ +     VL+ + +M VESC 
Sbjct: 643 IPEPCCVPDKMSSLSILFFDENMNVVLKVYPNMTVESCA 681

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410901407|ref|XP_003964187.1| PREDICTED: bone morphogenetic protein 3B-like [Takifugu rubripes]

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 69/98 (70%), Gaps = 3/98 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           RK L V F D+GW +W+I P++F +YYC+G C FPIP+ + PS+HA +QS   A+ ++SG
Sbjct: 360 RKNLKVDFADIGWSEWVIAPKAFDAYYCAGMCGFPIPRVVRPSNHATIQSIVRAVGIISG 419

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
            P PCCVPE + PL VL+Q+     VL+ + +M V+SC
Sbjct: 420 IPEPCCVPEKMAPLAVLFQDDSRNPVLKVYPNMSVQSC 457

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47228856|emb|CAG09371.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 69/98 (70%), Gaps = 3/98 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +W++ P++F +YYC+G C FPIPK + PS+HA +QS   A+ +VSG
Sbjct: 355 RRNLRVDFADIGWSEWVMAPKAFDAYYCAGTCGFPIPKVVRPSNHATIQSIVRAVGIVSG 414

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
            P PCCVPE + PL VL+Q+     VL+ + +M ++SC
Sbjct: 415 IPEPCCVPEKMNPLAVLFQDDSKNPVLKIYPNMSIQSC 452

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390336952|ref|XP_786367.2| PREDICTED: bone morphogenetic protein 3-like [Strongylocentrotus purpuratus]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---SG 186
           R  + V F  +GWD ++I P +FQ++YC+G+C+FPI K L PS+HA +QS M+L+   +G
Sbjct: 441 RHSMNVDFQAIGWDDYVIAPATFQAFYCAGQCAFPIQKELHPSNHALIQSIMHLLGVQTG 500

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ + PL +LY E      L+ + DM VESCG
Sbjct: 501 VPTPCCVPDKMEPLVLLYIEQDSTVTLKKYSDMVVESCG 539

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|348507198|ref|XP_003441143.1| PREDICTED: bone morphogenetic protein 3B-like [Oreochromis niloticus]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 70/98 (71%), Gaps = 3/98 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW++W+I P++F +YYC+G C FP+PK + P++HA +QS   A+ ++ G
Sbjct: 366 RRNLRVDFADIGWNEWVIAPKAFDAYYCAGTCGFPMPKVVRPTNHATIQSIVRAVGIIPG 425

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
            P PCCVPE ++PL VLYQ+     VL+ + +M V+SC
Sbjct: 426 IPEPCCVPENMSPLAVLYQDESRNPVLKVYPNMTVQSC 463

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|374722817|gb|AEZ68576.1| GDF10-like protein [Osmerus mordax]

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 110/200 (55%), Gaps = 17/200 (8%)

Query: 29  KRNIPDVESKTEENTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEENDVSRQ 88
           +RN+PD + + + N        ++P +  +T++N  ++ +     P  K    +++  + 
Sbjct: 276 RRNVPDQDMQLQTN--------HLPEVHYNTLKN-HELWQSTYFAPKAKPSTVKDERHKL 326

Query: 89  SCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIE 148
           S E   ++ K   L +D+  ++    + +     CS     R+ L V F D+GW +W++ 
Sbjct: 327 SLEGSEVLSKPQVLSFDERTMKKARRRQWSEPRACS-----RRYLRVDFADIGWSEWVLA 381

Query: 149 PQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSGTPGPCCVPETLTPLRVLYQ 205
           P++F ++YC+G C FPIPK + PS+HA +QS   A+ +V G P PCCVP+ ++PL VL+ 
Sbjct: 382 PKAFDAFYCAGTCGFPIPKVVRPSNHATIQSIVRAVGIVPGVPEPCCVPDKMSPLSVLFL 441

Query: 206 ESPYITVLRYFQDMRVESCG 225
           +     VL+ +  M V++C 
Sbjct: 442 DPDKNMVLKVYPGMSVDTCA 461

Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326918658|ref|XP_003205605.1| PREDICTED: bone morphogenetic protein 3-like [Meleagris gallopavo]

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG+C FPIPKAL PS+HA +QS   A+ +V G
Sbjct: 319 RRYLKVDFADIGWSEWIISPKSFDAYYCSGECQFPIPKALKPSNHATIQSIVRAVGVVPG 378

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ ++ L +L+ +     VL+ + +M VESC 
Sbjct: 379 IPEPCCVPDKMSSLSILFFDENKNVVLKVYPNMTVESCA 417

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|957226|gb|AAB33725.1| BMP-3 [Rattus sp.]

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +VSG
Sbjct: 260 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVSG 319

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M V+SC 
Sbjct: 320 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVDSCA 358

Source: Rattus sp.

Species: Rattus sp.

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|77736633|ref|NP_001029991.1| bone morphogenetic protein 3 precursor [Gallus gallus] gi|70611328|gb|AAZ05900.1| bone morphogenetic protein 3 precursor [Gallus gallus]

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG+C FPIPKAL PS+HA +QS   A+ +V G
Sbjct: 362 RRYLKVDFADIGWSEWIISPKSFDAYYCSGECQFPIPKALKPSNHATIQSIVRAVGVVPG 421

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ ++ L +L+ +     VL+ + +M VESC 
Sbjct: 422 IPEPCCVPDKMSSLSILFFDENKNVVLKVYPNMTVESCA 460

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194718235|gb|ACF93445.1| bone morphogenetic protein 3/3b [Branchiostoma japonicum]

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---SG 186
           R+P+ V F D+GW  WII P++F +YYC+G C FP+ K + PS+HA +QS M  V   SG
Sbjct: 353 RRPMRVDFADIGWSDWIISPKAFDAYYCAGTCDFPMSKVMKPSNHATIQSIMRTVGITSG 412

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP+ L+ L +LY +     VL+ + +M VESC 
Sbjct: 413 VPSPCCVPDKLSSLSILYFDENRNVVLKVYPNMSVESCA 451

Source: Branchiostoma japonicum

Species: Branchiostoma japonicum

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
UNIPROTKB|P22444	475	BMP3 "Bone morphogenetic prote	0.844	0.4	0.313	4.5e-24
UNIPROTKB|F1NTA6	462	BMP3 "Uncharacterized protein"	0.422	0.205	0.510	8.4e-24
UNIPROTKB|F1NA57	371	GDF10 "Uncharacterized protein	0.755	0.458	0.322	8.7e-24
ZFIN|ZDB-GENE-120316-1	423	gdf10b "growth differentiation	0.684	0.364	0.351	8.8e-24
MGI|MGI:95684	476	Gdf10 "growth differentiation	0.422	0.199	0.469	1.5e-23
RGD|2212	468	Bmp3 "bone morphogenetic prote	0.422	0.202	0.5	2e-23
UNIPROTKB|G3V903	468	Bmp3 "Bone morphogenetic prote	0.422	0.202	0.5	2e-23
UNIPROTKB|E2R0H4	471	BMP3 "Uncharacterized protein"	0.573	0.273	0.408	2e-23
ZFIN|ZDB-GENE-090312-17	441	gdf10a "growth differentiation	0.866	0.442	0.323	2.4e-23
UNIPROTKB|P12645	472	BMP3 "Bone morphogenetic prote	0.422	0.201	0.5	3.4e-23

UNIPROTKB|P22444 BMP3 "Bone morphogenetic protein 3" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 4.5e-24, P = 4.5e-24
 Identities = 64/204 (31%), Positives = 111/204 (54%)

Query:    27 SAKRNIPDVESKTEENTTHIK---EEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEEN 83
             S  R+ P +E +  + +T +    +   +P  E    E+  +V ++++    ++    + 
Sbjct:   277 SQSRSAPSIERRRRKRSTGVLLPLQNNELPGAEYQYKED--EVWEERKPYKTLQTQPPDK 334

Query:    84 DVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWD 143
               +++  +RK    K   L +D+  ++    + +     C+     R+ L V F D+GW 
Sbjct:   335 SKNKKK-QRKGPQQKSQTLQFDEQTLKKARRKQWIEPRNCA-----RRYLKVDFADIGWS 388

Query:   144 QWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSGTPGPCCVPETLTPL 200
             +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G P PCCVPE ++ L
Sbjct:   389 EWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSL 448

Query:   201 RVLYQESPYITVLRYFQDMRVESC 224
              +L+ +     VL+ + +M VESC
Sbjct:   449 SILFFDENKNVVLKVYPNMTVESC 472

GO:0070700 "BMP receptor binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0040007 "growth" evidence=IEA

UNIPROTKB|F1NTA6 BMP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 8.4e-24, P = 8.4e-24
 Identities = 50/98 (51%), Positives = 69/98 (70%)

Query:   130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
             R+ L V F D+GW +WII P+SF +YYCSG+C FPIPKAL PS+HA +QS   A+ +V G
Sbjct:   362 RRYLKVDFADIGWSEWIISPKSFDAYYCSGECQFPIPKALKPSNHATIQSIVRAVGVVPG 421

Query:   187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
              P PCCVP+ ++ L +L+ +     VL+ + +M VESC
Sbjct:   422 IPEPCCVPDKMSSLSILFFDENKNVVLKVYPNMTVESC 459

GO:0040007 "growth" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0070700 "BMP receptor binding" evidence=IEA

UNIPROTKB|F1NA57 GDF10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 58/180 (32%), Positives = 97/180 (53%)

Query:    48 EEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIEENDVSRQSCERKPLVVKFGDLGWDQW 107
             +   +P +E +   N  D+ +       +K      D  R+  E   ++ K   L +D+ 
Sbjct:   196 QNNELPEVEYNNQYNKHDIWENA--YKSLKPKASRKDRRRKGQENTEMLAKSQVLNFDEK 253

Query:   108 IIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPK 167
              ++    + +     CS     R+ + V F D+GW++WII P+SF +YYC+G C FPIPK
Sbjct:   254 TMKKARRKQWNEPRICS-----RRYMKVDFADIGWNEWIISPKSFDAYYCAGTCEFPIPK 308

Query:   168 ALAPSSHAYLQS---AMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
              + PS+HA +QS   A+ ++ G P PCCVP+ ++ L VL+ +     VL+ + +M VE+C
Sbjct:   309 VVRPSNHATIQSIVKAVGIIPGIPEPCCVPDKMSSLSVLFLDENKNVVLKVYPNMSVETC 368

GO:0005576 "extracellular region" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

ZFIN|ZDB-GENE-120316-1 gdf10b "growth differentiation factor 10b" [Danio rerio (taxid:7955)]

 Score = 258 (95.9 bits), Expect = 8.8e-24, Sum P(2) = 8.8e-24
 Identities = 58/165 (35%), Positives = 95/165 (57%)

Query:    69 KKEHVPPVKKYIEEN-----DVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKC 123
             K+  VP V+ YI+       D +  + + KPL    G  G  +   + ++ +      + 
Sbjct:   258 KENQVPGVR-YIDLKSGGLWDGAFFAKQNKPLTDIEGSRGSQELTFDEKTMKKARRK-QW 315

Query:   124 SFP-IPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS--- 179
             S P +  R+ L V F D+GW +WI+ P++F +YYC+G C+FPIPK + PS+HA +QS   
Sbjct:   316 SEPRVCTRRYLRVDFADIGWSEWILAPKAFDAYYCAGTCAFPIPKVVHPSNHATIQSIVR 375

Query:   180 AMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
             A+ +V G P PCCVP+ ++ L VL+ +S    +++ +  M VE+C
Sbjct:   376 AVGIVPGVPDPCCVPDKMSSLAVLFLDSSRNMLVKIYPSMSVETC 420

GO:0005576 "extracellular region" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0040007 "growth" evidence=IEA

MGI|MGI:95684 Gdf10 "growth differentiation factor 10" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
 Identities = 46/98 (46%), Positives = 67/98 (68%)

Query:   130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
             R+ L V F D+GW++WII P+SF +YYC+G C FP+PK + PS+HA +QS   A+ +V G
Sbjct:   376 RRYLKVDFADIGWNEWIISPKSFDAYYCAGACEFPMPKIVRPSNHATIQSIVRAVGIVPG 435

Query:   187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
              P PCCVP+ +  L VL+ +     VL+ + +M VE+C
Sbjct:   436 IPEPCCVPDKMNSLGVLFLDENRNAVLKVYPNMSVETC 473

GO:0005125 "cytokine activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0008083 "growth factor activity" evidence=IEA

GO:0040007 "growth" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=ISO

RGD|2212 Bmp3 "bone morphogenetic protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 49/98 (50%), Positives = 69/98 (70%)

Query:   130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
             R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +VSG
Sbjct:   368 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVSG 427

Query:   187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
              P PCCVPE ++ L +L+ +     VL+ + +M V+SC
Sbjct:   428 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVDSC 465

GO:0001503 "ossification" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0008083 "growth factor activity" evidence=IDA;TAS

GO:0030154 "cell differentiation" evidence=IEA

GO:0031988 "membrane-bounded vesicle" evidence=IDA

GO:0040007 "growth" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0051216 "cartilage development" evidence=IEA

GO:0070700 "BMP receptor binding" evidence=ISO

UNIPROTKB|G3V903 Bmp3 "Bone morphogenetic protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 49/98 (50%), Positives = 69/98 (70%)

Query:   130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
             R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +VSG
Sbjct:   368 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVSG 427

Query:   187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
              P PCCVPE ++ L +L+ +     VL+ + +M V+SC
Sbjct:   428 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVDSC 465

GO:0005576 "extracellular region" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0040007 "growth" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0070700 "BMP receptor binding" evidence=IEA

UNIPROTKB|E2R0H4 BMP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 56/137 (40%), Positives = 83/137 (60%)

Query:    91 ERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQ 150
             +RK L  K   L +D+  ++    + +     C+     R+ L V F D+GW +WII P+
Sbjct:   337 QRKGLHQKSQTLQFDEQTLKKARRKQWIEPRNCA-----RRYLKVDFADIGWSEWIISPK 391

Query:   151 SFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSGTPGPCCVPETLTPLRVLYQES 207
             SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G P PCCVPE ++ L +L+ + 
Sbjct:   392 SFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSLSILFFDE 451

Query:   208 PYITVLRYFQDMRVESC 224
                 VL+ + +M VESC
Sbjct:   452 NKNVVLKVYPNMTVESC 468

GO:0008083 "growth factor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0040007 "growth" evidence=IEA

ZFIN|ZDB-GENE-090312-17 gdf10a "growth differentiation factor 10a" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 68/210 (32%), Positives = 114/210 (54%)

Query:    22 IYDEKSAKR--NIPDVESKTE-E-NTTHIKEEENVPRIEKSTVENIPDVQKKKEHVPPVK 77
             I D++ A+   + PD+  K E E + T   E   +P +E ++ +   D+ +   +  P+K
Sbjct:   237 IGDQQPAQSPDSSPDIRVKRELELDFTDPIENNELPEVEYNSFKQ-HDMWESAYY--PLK 293

Query:    78 KYIEENDVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVKF 137
                 + +  R+  E      K   L +D+  ++    + +     CS     R+ L V F
Sbjct:   294 PKPFKKERRRKGQEHTDGFGKSQVLRFDEKTMKKARRRQWKEPRSCS-----RRYLKVDF 348

Query:   138 GDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSGTPGPCCVP 194
              D+GW++WI+ P+SF ++YC+G C FPIPK + PS+HA +QS   A+ ++ G P PCCVP
Sbjct:   349 ADIGWNEWILSPKSFDAFYCAGTCEFPIPKVVRPSNHATIQSIVKAVGIIPGIPEPCCVP 408

Query:   195 ETLTPLRVLYQESPYITVLRYFQDMRVESC 224
             E + PL VL+ +     VL+ + +M VE+C
Sbjct:   409 EKMKPLSVLFVDESKNIVLKIYPNMSVETC 438

GO:0008083 "growth factor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|P12645 BMP3 "Bone morphogenetic protein 3" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 3.4e-23, P = 3.4e-23
 Identities = 49/98 (50%), Positives = 68/98 (69%)

Query:   130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
             R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G
Sbjct:   372 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 431

Query:   187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESC 224
              P PCCVPE ++ L +L+ +     VL+ + +M VESC
Sbjct:   432 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESC 469

GO:0040007 "growth" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0070700 "BMP receptor binding" evidence=IPI

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0001501 "skeletal system development" evidence=TAS

GO:0005102 "receptor binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
smart00204	102	smart00204, TGFB, Transforming growth factor-beta	7e-34
pfam00019	105	pfam00019, TGF_beta, Transforming growth factor be	1e-29
PHA02913	172	PHA02913, PHA02913, TGF-beta-like protein; Provisi	8e-04

>gnl|CDD|214556 smart00204, TGFB, Transforming growth factor-beta (TGF-beta) family

 Score =  116 bits (294), Expect = 7e-34
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           +R+ L V F DLGWD WII P+ + +YYC G+C FP+  +L  ++HA +Q+ ++L+    
Sbjct: 2   RRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNATNHAIVQTLVHLLGPNP 61

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP  L+PL +LY +     VLR + +M VE CG
Sbjct: 62  VPKPCCVPTKLSPLSMLYYDDDGNVVLRNYPNMVVEECG 100

Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types. Length = 102

>gnl|CDD|215660 pfam00019, TGF_beta, Transforming growth factor beta like domain

 Score =  105 bits (265), Expect = 1e-29
 Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           + + L V F DLGW  WII P+ + + YC+G+C FP+   L  ++HA LQ+ + L++   
Sbjct: 5   RLRELYVDFRDLGWGDWIIAPEGYIANYCAGECPFPLADDLNLTNHAILQTLVRLLNPRA 64

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVP  L+PL +LY +     VLR + +M V+ CG
Sbjct: 65  VPKPCCVPTKLSPLSMLYLDDSSNVVLRLYPNMVVKECG 103

Length = 105

>gnl|CDD|177497 PHA02913, PHA02913, TGF-beta-like protein; Provisional

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 19/99 (19%)

Query: 135 VKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMY-------LVSG 186
           + F  D+G  +WI++P+   +  C G CS         S+H    + MY       +   
Sbjct: 84  IDFKADMGM-KWILKPEGTHANLCIGICSI--------SNHK-KINLMYGTAFKHHMPDN 133

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           T   CC P  +    + Y+E   I      ++ ++  C 
Sbjct: 134 TIPFCCAPIKMKNFIIAYKEGRKIKT-DNIKNFKILECA 171

Length = 172

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
smart00204	102	TGFB Transforming growth factor-beta (TGF-beta) fa	100.0
KOG3900|consensus	413		100.0
PF00019	105	TGF_beta: Transforming growth factor beta like dom	99.98
PHA02913	172	TGF-beta-like protein; Provisional	99.97
smart00204	102	TGFB Transforming growth factor-beta (TGF-beta) fa	99.42
KOG3900|consensus	413		99.4
PHA02913	172	TGF-beta-like protein; Provisional	99.38
PF00019	105	TGF_beta: Transforming growth factor beta like dom	99.23
smart00041	82	CT C-terminal cystine knot-like domain (CTCK). The	90.61

>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family

Probab=100.00  E-value=9.1e-38  Score=240.59  Aligned_cols=98  Identities=45%  Similarity=1.019  Sum_probs=94.7

Q ss_pred             CCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEEEEE
Q psy15092        128 PKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRVLYQ  205 (225)
Q Consensus       128 c~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~ily~  205 (225)
                      |+|++|+|+|+||||++|||+|++|+|+||.|.|++++...++++|||++|++++..+  .++.|||+|++|++|+|||+
T Consensus         1 Ccr~~l~VdF~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~~~~~~Ha~i~~~~~~~~~~~~~~pCC~P~~~~~l~~ly~   80 (102)
T smart00204        1 CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNATNHAIVQTLVHLLGPNPVPKPCCVPTKLSPLSMLYY   80 (102)
T ss_pred             CceeEEEEEHhhcCCcceEEcCCceeeeEEeeeCCCCcccccCCcchhhhhhhHHhcCCCCCCCCCccCceEecEEEEEE
Confidence            8999999999999999999999999999999999999988889999999999999887  68999999999999999999


Q ss_pred             eCCCeEEEeEeCCeEEccCC
Q psy15092        206 ESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       206 ~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +++|+++++++|||+|++||
T Consensus        81 ~~~~~i~~~~~~~Mvv~~Cg  100 (102)
T smart00204       81 DDDGNVVLRNYPNMVVEECG  100 (102)
T ss_pred             eCCCcEEEEEcCCCEEeeee
Confidence            99999999999999999998

Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.

>KOG3900|consensus

Probab=100.00  E-value=1.9e-36  Score=282.14  Aligned_cols=110  Identities=43%  Similarity=0.872  Sum_probs=101.0

Q ss_pred             cccccCCCCC--CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCC
Q psy15092        115 QSYYCSGKCS--FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGP  190 (225)
Q Consensus       115 ~A~~C~G~C~--~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~p  190 (225)
                      +..++...|.  ...|||++|||+|++|||+||||||+||+||||+|.|+++++. +++||||++|++++..+  .+++|
T Consensus       298 ~~~~~~~~~~~~~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G~C~~p~~~-~~~tnHa~vq~l~~~~~p~~~p~p  376 (413)
T KOG3900|consen  298 RRARRGRNCEGARNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSGTCPFPLAD-HAATNHAIVQTLVHAVNPEPVPKP  376 (413)
T ss_pred             ccccccccCCCCCCceeccceEeehhhcCCcceEeCCCcccCceecCcCCCchhh-cCCcchHHHHHHHHhhCCCCCCCC
Confidence            3344444443  3469999999999999998899999999999999999999999 99999999999999999  78999


Q ss_pred             ceeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        191 CCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       191 CCvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      ||||++|++|+|||+|++++|++++|+||+|++||
T Consensus       377 CCvPtklsplsvLy~d~~~~vv~k~y~nMvV~~Cg  411 (413)
T KOG3900|consen  377 CCVPTKLSPLSVLYFDDNGNVVLKTYPNMVVESCG  411 (413)
T ss_pred             ccccCccCceEEEEEeCCCcEEEEEecCcEEEecc
Confidence            99999999999999999999999999999999998

>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types

Probab=99.98  E-value=1.1e-33  Score=218.02  Aligned_cols=99  Identities=43%  Similarity=0.896  Sum_probs=93.3

Q ss_pred             CCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEEEE
Q psy15092        127 IPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRVLY  204 (225)
Q Consensus       127 lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~ily  204 (225)
                      .|++++++|+|+||||++|||+|++|+|+||.|.|+.++...++.++|++++++++...  .+++|||+|++|++|+|||
T Consensus         3 ~Cc~~~~~v~F~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~~~~~~ha~~~~~~~~~~~~~~~~pCC~P~~~~~l~il~   82 (105)
T PF00019_consen    3 RCCRRSLYVNFKDLGWDDWIIAPEGYNANYCSGSCPFPLSNHNNHSNHAILQSLMHSLNPRSVPQPCCVPTKYSPLSILY   82 (105)
T ss_dssp             BSEEEEEEEECTCTTSTTTEEESSEEEEEEEESBSCSSSSCGCHHHHHHHHHHHHHHHSTTTSTS-EEEEEEEEEEEEEE
T ss_pred             cceeEEEEEEhhhcCCceeEeccCccccccccceecccccccccccccccccccccccccccccCCcEeeeeeceEEEEE
Confidence            58999999999999997899999999999999999999988888889999999998877  7899999999999999999


Q ss_pred             EeCCCeEEEeEeCCeEEccCC
Q psy15092        205 QESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       205 ~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +++++.|++++|+||+|++||
T Consensus        83 ~~~~~~i~~~~~~~m~v~~Cg  103 (105)
T PF00019_consen   83 LDEDGNIVLKTLPNMIVKECG  103 (105)
T ss_dssp             EETTSEEEEEEEEEEEEEEEE
T ss_pred             EECCCcEEEEEeCCEEecccc
Confidence            999999999999999999997

TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....

>PHA02913 TGF-beta-like protein; Provisional

Probab=99.97  E-value=8.9e-31  Score=217.07  Aligned_cols=96  Identities=20%  Similarity=0.419  Sum_probs=79.7

Q ss_pred             CCCCCCCCeeeee-cCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-CCCCCceeccccCceEE
Q psy15092        125 FPIPKRKPLVVKF-GDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-GTPGPCCVPETLTPLRV  202 (225)
Q Consensus       125 ~~lc~R~~l~V~F-~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-~~~~pCCvP~~~~~l~i  202 (225)
                      ...|||++|+|+| +|||| +|||||+||+|+||.|.|+++.   .+.++|++.+.+.+... ..++|||+|++|++|+|
T Consensus        74 ~~~CcR~~lyVDF~~dIGW-dWIIAPkgY~AyyC~G~Cp~p~---~~~~~~~~~~ll~~~~p~~~~~pCCvPtklspLSm  149 (172)
T PHA02913         74 DAICCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICSISN---HKKINLMYGTAFKHHMPDNTIPFCCAPIKMKNFII  149 (172)
T ss_pred             CCCceeEEEEechhhccCc-ceEecCCCeeeeEEeeeCCCCc---chhhHHHHHHHHHhcCCCCCCCCCccccccccEEE
Confidence            4679999999999 99999 8999999999999999999863   22344444333333323 67889999999999999


Q ss_pred             EEEeCCCeEEEeEeCCeEEccCC
Q psy15092        203 LYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       203 ly~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      ||+++ +++++++++||+|++||
T Consensus       150 LY~d~-~nV~~k~~~nMvVeeCG  171 (172)
T PHA02913        150 AYKEG-RKIKTDNIKNFKILECA  171 (172)
T ss_pred             EEECC-CEEEEeECCCcEEeccc
Confidence            99975 68999999999999998

>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family

Probab=99.42  E-value=4.6e-14  Score=108.68  Aligned_cols=44  Identities=48%  Similarity=1.256  Sum_probs=39.9

Q ss_pred             eeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCe
Q psy15092         90 CERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPL  133 (225)
Q Consensus        90 C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l  133 (225)
                      |+|++|+|+|+|+||++|||+|++|+|+||.|.|+.++-...+.
T Consensus         1 Ccr~~l~VdF~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~~~~   44 (102)
T smart00204        1 CRRRQLYVDFKDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNA   44 (102)
T ss_pred             CceeEEEEEHhhcCCcceEEcCCceeeeEEeeeCCCCcccccCC
Confidence            89999999999999999999999999999999999877655443

Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.

>KOG3900|consensus

Probab=99.40  E-value=1.3e-13  Score=128.73  Aligned_cols=52  Identities=44%  Similarity=1.094  Sum_probs=44.9

Q ss_pred             ccccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCeeee
Q psy15092         84 DVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLVVK  136 (225)
Q Consensus        84 ~~~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l~V~  136 (225)
                      ....+.|||++|||+|.++||++|||+|++|.||||.|.|++++.. .+...+
T Consensus       307 ~~~~~~Ccr~~lyV~F~~lGW~dWIIaP~gy~A~yC~G~C~~p~~~-~~~tnH  358 (413)
T KOG3900|consen  307 EGARNRCCRRPLYVDFRDLGWDDWIIAPKGYDANYCSGTCPFPLAD-HAATNH  358 (413)
T ss_pred             CCCCCceeccceEeehhhcCCcceEeCCCcccCceecCcCCCchhh-cCCcch
Confidence            3355679999999999999999999999999999999999999876 444443

>PHA02913 TGF-beta-like protein; Provisional

Probab=99.38  E-value=1.6e-13  Score=114.31  Aligned_cols=41  Identities=27%  Similarity=0.704  Sum_probs=37.5

Q ss_pred             ccCCeeeeCeEEEe-cccCCccceeCCCCccccccCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKF-GDLGWDQWIIEPQSFQSYYCSGKCSFPI  127 (225)
Q Consensus        86 ~~~~C~r~~l~V~F-~dlGw~~WIi~P~~~~A~~C~G~C~~~l  127 (225)
                      ....|+|++|+|+| +|+|| +|||||+||+|+||.|.|+++.
T Consensus        73 ~~~~CcR~~lyVDF~~dIGW-dWIIAPkgY~AyyC~G~Cp~p~  114 (172)
T PHA02913         73 IDAICCIRDFNIDFKADMGM-KWILKPEGTHANLCIGICSISN  114 (172)
T ss_pred             CCCCceeEEEEechhhccCc-ceEecCCCeeeeEEeeeCCCCc
Confidence            45679999999999 99999 6999999999999999998763

>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types

Probab=99.23  E-value=3.2e-12  Score=98.37  Aligned_cols=47  Identities=45%  Similarity=1.129  Sum_probs=41.6

Q ss_pred             CCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCee
Q psy15092         88 QSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPLV  134 (225)
Q Consensus        88 ~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l~  134 (225)
                      ..|+|++|+|+|+|+||++||++|++|+|++|.|.|+.+.-....+.
T Consensus         2 ~~Cc~~~~~v~F~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~~~~~   48 (105)
T PF00019_consen    2 KRCCRRSLYVNFKDLGWDDWIIAPEGYNANYCSGSCPFPLSNHNNHS   48 (105)
T ss_dssp             SBSEEEEEEEECTCTTSTTTEEESSEEEEEEEESBSCSSSSCGCHHH
T ss_pred             CcceeEEEEEEhhhcCCceeEeccCccccccccceeccccccccccc
Confidence            56999999999999999999999999999999999998766544443

TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....

>smart00041 CT C-terminal cystine knot-like domain (CTCK)

Probab=90.61  E-value=0.5  Score=34.61  Aligned_cols=59  Identities=25%  Similarity=0.503  Sum_probs=39.7

Q ss_pred             cccccccccCCCCCCCCCCCCchHHHHHHHHhcCCCCCCceeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        152 FQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       152 y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~~~~~pCCvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +...+|.|.|.....   ...+.         . ...-.||.|.++....|-+.=.||..+.+.+  |+|++|+
T Consensus        18 v~~~~C~G~C~s~~~---~~~~~---------~-~~~c~CC~p~~~~~~~v~l~C~dg~~~~~~v--~~i~~C~   76 (82)
T smart00041       18 VKNAFCEGKCGSASS---YSIQD---------V-QHSCSCCQPHKTKTRQVRLRCPDGSTVKKTV--MHIEECG   76 (82)
T ss_pred             EEcCcEEeECCCeeE---cCccc---------c-ccCCCccCCceeEEEEEEEECCCCCEEEEEE--EEEEecc
Confidence            788999999975321   11110         0 1126899999999999988778888655555  5666664

The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
2qcq_A	110	Crystal Structure Of Bone Morphogenetic Protein-3 (		1e-23
3qb4_A	117	Crystal Structure Of A Tgf-Beta Ligand-Receptor Com		1e-20
1waq_A	117	Crystal Structure Of Human Growth And Differentiati		2e-20
2bhk_A	120	Crystal Structure Of Human Growth And Differentiati		2e-20
3bmp_A	114	Human Bone Morphogenetic Protein-2 (Bmp-2) Length =		2e-19
1es7_A	116	Complex Between Bmp-2 And Two Bmp Receptor Ia Ectod		2e-19
1m4u_L	139	Crystal Structure Of Bone Morphogenetic Protein-7 (		7e-19
2h64_A	114	Crystal Structure Of A Ternary Ligand-Receptor Comp		2e-18
1reu_A	103	Structure Of The Bone Morphogenetic Protein 2 Mutan		2e-18
3bk3_A	114	Crystal Structure Of The Complex Of Bmp-2 And The F		3e-18
2qcw_A	132	Crystal Structure Of Bone Morphogenetic Protein-6 (		5e-18
2r52_A	143	Crystal Structure Analysis Of Bone Morphogenetic Pr		8e-18
2r53_A	116	Crystal Structure Analysis Of Bone Morphogenetic Pr		9e-18
1zkz_A	110	Crystal Structure Of Bmp9 Length = 110		2e-16
3hh2_A	109	Crystal Structure Of The Myostatin:follistatin 288		2e-10
1nys_B	116	Crystal Structure Of Activin A Bound To The Ecd Of		3e-10
1ktz_A	112	Crystal Structure Of The Human Tgf-Beta Type Ii Rec		6e-06
1tfg_A	112	An Unusual Feature Revealed By The Crystal Structur		8e-06
3rjr_A	363	Crystal Structure Of Pro-tgf Beta 1 Length = 363		4e-04

>pdb|2QCQ|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3) Length = 110

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 3/99 (3%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQS---AMYLVSG 186
           R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS   A+ +V G
Sbjct: 10  RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 69
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCCVPE ++ L +L+ +     VL+ + +M VESC 
Sbjct: 70  IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCA 108

>pdb|3QB4|A Chain A, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex Length = 117

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
           RK L V F D+GWD WII P  +++++C G C FP+   L P++HA +Q+ M  +    T
Sbjct: 18  RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLASHLEPTNHAVIQTLMNSMDPEST 77
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+P+ +L+ +S    V + ++DM VESCG
Sbjct: 78  PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 115

>pdb|1WAQ|A Chain A, Crystal Structure Of Human Growth And Differentiation Factor 5 (Gdf-5) Length = 117

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
           RK L V F D+GWD WII P  +++++C G C FP+   L P++HA +Q+ M  +    T
Sbjct: 18  RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 77
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+P+ +L+ +S    V + ++DM VESCG
Sbjct: 78  PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 115

>pdb|2BHK|A Chain A, Crystal Structure Of Human Growth And Differentiation Factor 5 (Gdf5) Length = 120

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
           RK L V F D+GWD WII P  +++++C G C FP+   L P++HA +Q+ M  +    T
Sbjct: 21  RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 80
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+P+ +L+ +S    V + ++DM VESCG
Sbjct: 81  PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 118

>pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2) Length = 114

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 15  KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     VL+ +QDM VE CG
Sbjct: 75  PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 112

>pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains Length = 116

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 17  KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 76
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     VL+ +QDM VE CG
Sbjct: 77  PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 114

>pdb|1M4U|L Chain L, Crystal Structure Of Bone Morphogenetic Protein-7 (bmp-7) In Complex With The Secreted Antagonist Noggin Length = 139

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           K+  L V F DLGW  WII P+ + +YYC G+C+FP+   +  ++HA +Q+ ++ ++   
Sbjct: 39  KKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPET 98
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 99  VPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG 137

>pdb|2H64|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of Bmp-2 Length = 114

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 15  KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     V + +QDM VE CG
Sbjct: 75  PKACCVPTELSAISMLYLDENEKVVKKDYQDMVVEGCG 112

>pdb|1REU|A Chain A, Structure Of The Bone Morphogenetic Protein 2 Mutant L51p Length = 103

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP    L  ++HA +Q+ +  V S  
Sbjct: 4   KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPPADHLNSTNHAIVQTLVNSVNSKI 63
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     VL+ +QDM VE CG
Sbjct: 64  PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 101

>pdb|3BK3|A Chain A, Crystal Structure Of The Complex Of Bmp-2 And The First Von Willebrand Domain Type C Of Crossveinless-2 Length = 114

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + + YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 15  KRHPLYVDFSDVGWNDWIVAPPGYHAMYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74
Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +L  +     VL+ +QDM VE CG
Sbjct: 75  PKACCVPTELSAISMLMLDENEKVVLKNYQDMVVEGCG 112

>pdb|2QCW|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6) Length = 132

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           ++  L V F DLGW  WII P+ + + YC G+CSFP+   +  ++HA +Q+ ++L++   
Sbjct: 32  RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 91
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 92  VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 130

>pdb|2R52|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6 (Bmp-6) Length = 143

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           ++  L V F DLGW  WII P+ + + YC G+CSFP+   +  ++HA +Q+ ++L++   
Sbjct: 43  RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 102
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 103 VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 141

>pdb|2R53|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6 Variant B2 (b2-bmp-6) Length = 116

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           ++  L V F DLGW  WII P+ + + YC G+CSFP+   +  ++HA +Q+ ++L++   
Sbjct: 16  RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 75
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 76  VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 114

>pdb|1ZKZ|A Chain A, Crystal Structure Of Bmp9 Length = 110

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
           ++  L V F D+GWD WII P+ +++Y C G C FP+   + P+ HA +Q+ ++L   + 
Sbjct: 9   QKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTK 68
Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRY-FQDMRVESCG 225
               CCVP  L+P+ VLY++   +  L+Y ++ M V  CG
Sbjct: 69  VGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECG 108

>pdb|3HH2|A Chain A, Crystal Structure Of The Myostatin:follistatin 288 Complex Length = 109

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 130 RKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPG 189
           R PL V F   GWD WII P+ +++ YCSG+C F   +   P +H   Q+      G+ G
Sbjct: 17  RYPLTVDFEAFGWD-WIIAPKRYKANYCSGECEFVFLQKY-PHTHLVHQAN---PRGSAG 71
Query: 190 PCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           PCC P  ++P+ +LY       +      M V+ CG
Sbjct: 72  PCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCG 107

>pdb|1NYS|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib P41 Length = 116

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 119 CSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQ 178
           C GK    I  +K   V F D+GW+ WII P  + + YC G+C    P  +A +S + L 
Sbjct: 4   CDGK--VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGEC----PSHIAGTSGSSLS 57
Query: 179 SAMYLVS----------GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
               +++               CCVP  L P+ +LY +     + +  Q+M VE CG
Sbjct: 58  FHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG 114

>pdb|1KTZ|A Chain A, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor Extracellular Domain In Complex With Tgf-Beta3 Length = 112

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 131 KPLVVKF-GDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
           +PL + F  DLGW +W+ EP+ + + +CSG C +      A ++H+ +      ++   +
Sbjct: 18  RPLYIDFRQDLGW-KWVHEPKGYYANFCSGPCPY---LRSADTTHSTVLGLYNTLNPEAS 73
Query: 188 PGPCCVPETLTPLRVLY--QESPYITVLRYFQDMRVESC 224
             PCCVP+ L PL +LY    +P +  L    +M V+SC
Sbjct: 74  ASPCCVPQDLEPLTILYYVGRTPKVEQL---SNMVVKSC 109

>pdb|1TFG|A Chain A, An Unusual Feature Revealed By The Crystal Structure At 2.2 Angstroms Resolution Of Human Transforming Growth Factor-Beta2 Length = 112

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 131 KPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GT 187
           +PL + F  DLGW +WI EP+ + + +C+G C +      + + H+ + S    ++   +
Sbjct: 18  RPLYIDFKRDLGW-KWIHEPKGYNANFCAGACPYLWS---SDTQHSRVLSLYNTINPEAS 73
Query: 188 PGPCCVPETLTPLRVLY--QESPYITVLRYFQDMRVESC 224
             PCCV + L PL +LY   ++P I  L    +M V+SC
Sbjct: 74  ASPCCVSQDLEPLTILYYIGKTPKIEQL---SNMIVKSC 109

>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1 Length = 363

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 139 DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVSGTPGPCCVPETLT 198
           DLGW +WI EP+ + + +C G C + I       S        +    +  PCCVP+ L 
Sbjct: 278 DLGW-KWIHEPKGYHANFCLGPCPY-IWSLDTQYSKVLALYNQHNPGASAAPCCVPQALE 335
Query: 199 PLRVLY 204
           PL ++Y
Sbjct: 336 PLPIVY 341

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
2qcq_A	110	Bone morphogenetic protein 3; BMP, TGF-beta, signa	4e-34
1zkz_A	110	Growth/differentiation factor 2; glycoprotein, gro	1e-32
3evs_B	117	Growth/differentiation factor 5; ligand-receptor c	9e-32
2h62_A	114	BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-b	9e-32
1lxi_A	139	Bone morphogenetic protein 7; cystine-knot growth	9e-32
2r52_A	143	BMP-6, bone morphogenetic protein 6; TGF-beta liga	2e-31
2arp_A	116	Inhibin beta A chain; cystine knot, disulfide rich	2e-29
3hh2_A	109	Growth/differentiation factor 8; protein-protein c	2e-27
2tgi_A	112	Transforming growth factor ,beta 2; 1.80A {Homo sa	4e-26
3rjr_A	363	Transforming growth factor beta-1; TGF beta, activ	3e-24
2ask_A	113	Artemin; glial cell derived family ligand, neurotr	1e-13
1agq_A	135	GDNF, glial cell-derived neurotrophic factor; grow	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens} Length = 110

 Score =  117 bits (294), Expect = 4e-34
 Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 3/100 (3%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---S 185
            R+ L V F D+GW +WII P+SF +YYCSG C FP+PK+L PS+HA +QS +  V    
Sbjct: 9   ARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVP 68

Query: 186 GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           G P PCCVPE ++ L +L+ +     VL+ + +M VESC 
Sbjct: 69  GIPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCA 108

>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens} Length = 110

 Score =  113 bits (284), Expect = 1e-32
 Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           ++  L V F D+GWD WII P+ +++Y C G C FP+   + P+ HA +Q+ ++L     
Sbjct: 9   QKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTK 68

Query: 187 TPGPCCVPETLTPLRVLYQ-ESPYITVLRYFQDMRVESCG 225
               CCVP  L+P+ VLY+ +    T+  +++ M V  CG
Sbjct: 69  VGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECG 108

>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} PDB: 1waq_A 3qb4_A 2bhk_A Length = 117

 Score =  111 bits (279), Expect = 9e-32
 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
            RK L V F D+GWD WII P  +++++C G C FP+   L P++HA +Q+ M  +    
Sbjct: 17  SRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPES 76

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           TP  CCVP  L+P+ +L+ +S    V + ++DM VESCG
Sbjct: 77  TPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCG 115

>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A Length = 114

 Score =  111 bits (278), Expect = 9e-32
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 15  KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 74

Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     VL+ +QDM VE CG
Sbjct: 75  PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 112

>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A Length = 139

 Score =  112 bits (280), Expect = 9e-32
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--G 186
           K+  L V F DLGW  WII P+ + +YYC G+C+FP+   +  ++HA +Q+ ++ ++   
Sbjct: 39  KKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPET 98

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 99  VPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG 137

>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens} Length = 143

 Score =  111 bits (278), Expect = 2e-31
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
           ++  L V F DLGW  WII P+ + + YC G+CSFP+   +  ++HA +Q+ ++L+    
Sbjct: 43  RKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEY 102

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 103 VPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACG 141

>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A* Length = 116

 Score =  105 bits (262), Expect = 2e-29
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSS--HAYLQSAMYLVS- 185
            +K   V F D+GW+ WII P  + + YC G+C   I      S   H+ + +   +   
Sbjct: 12  CKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGH 71

Query: 186 ---GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                   CCVP  L P+ +LY +     + +  Q+M VE CG
Sbjct: 72  SPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG 114

>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} PDB: 3sek_B* Length = 109

 Score =   99 bits (249), Expect = 2e-27
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 119 CSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQ 178
           C    +     R PL V F   GWD WII P+ +++ YCSG+C F   +   P +H   Q
Sbjct: 6   CDEHSTESRCCRYPLTVDFEAFGWD-WIIAPKRYKANYCSGECEFVFLQKY-PHTHLVHQ 63

Query: 179 SAMYLVSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                  G+ GPCC P  ++P+ +LY       +      M V+ CG
Sbjct: 64  ---ANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCG 107

>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A Length = 112

 Score = 96.9 bits (241), Expect = 4e-26
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
             +PL + F      +WI EP+ + + +C+G C +      + + H+ + S    +    
Sbjct: 16  CLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLW---SSDTQHSRVLSLYNTINPEA 72

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           +  PCCV + L PL +LY        +    +M V+SC 
Sbjct: 73  SASPCCVSQDLEPLTILYYIGKTP-KIEQLSNMIVKSCK 110

>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa} Length = 363

 Score = 97.7 bits (242), Expect = 3e-24
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 84  DVSRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPK---RKPLVVKFGDL 140
           D++      +P ++           +     +    +  C     K    + L + F   
Sbjct: 219 DLATIHGMNRPFLLLMATPLERAQHLHSSRHRRALDTNYCFSSTEKNCCVRQLYIDFRKD 278

Query: 141 GWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SGTPGPCCVPETLT 198
              +WI EP+ + + +C G C +        + ++ + +         +  PCCVP+ L 
Sbjct: 279 LGWKWIHEPKGYHANFCLGPCPYIWS---LDTQYSKVLALYNQHNPGASAAPCCVPQALE 335

Query: 199 PLRVLYQESPYITVLRYFQDMRVESCG 225
           PL ++Y        +    +M V SC 
Sbjct: 336 PLPIVYYVGRKP-KVEQLSNMIVRSCK 361

>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C* Length = 113

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--- 185
           + +  +V    LG      E   F   +CSG C           +      A+       
Sbjct: 17  RLRSQLVPVRALGLGHRSDELVRF--RFCSGSCRRARSPHDLSLASLLGAGALRPPPGSR 74

Query: 186 GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
               PCC P     +  +   S + TV      +   +CG
Sbjct: 75  PVSQPCCRPTRYEAVSFMDVNSTWRTV----DRLSATACG 110

>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B* Length = 135

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 16/102 (15%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAM-----YL 183
               + +   DLG      E   F   YCSG C          + +  +   +       
Sbjct: 43  VLTAIHLNVTDLGLGYETKEELIF--RYCSGSCEAAE------TMYDKILKNLSRSRRLT 94

Query: 184 VSGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                  CC P           +S    V    +    + CG
Sbjct: 95  SDKVGQACCRPVAFDDDLSFLDDS---LVYHILRKHSAKRCG 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 56/181 (30%)

Query: 2   SPNFETPVDGNKEKEYEHNSIYDEKS---AKRNIP-------DVESKTEEN--------- 42
            PN+ +  D +   +   +SI  E       +          +V++    N         
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 43  -TT---HIKEEENVPRIEKSTVENIPDVQKKKEHVPPVKKYIE--ENDVSRQSCERKPLV 96
            TT    + +  +       ++++        E    + KY++    D+ R+     P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 97  VK-FGDL------GWDQW----------IIE-------PQSFQSYYCSGKCS-FP----I 127
           +    +        WD W          IIE       P  ++  +   + S FP    I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHI 387

Query: 128 P 128
           P
Sbjct: 388 P 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
1zkz_A	110	Growth/differentiation factor 2; glycoprotein, gro	100.0
3evs_B	117	Growth/differentiation factor 5; ligand-receptor c	100.0
2qcq_A	110	Bone morphogenetic protein 3; BMP, TGF-beta, signa	100.0
2h62_A	114	BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-b	100.0
2r52_A	143	BMP-6, bone morphogenetic protein 6; TGF-beta liga	100.0
1lxi_A	139	Bone morphogenetic protein 7; cystine-knot growth	100.0
2arp_A	116	Inhibin beta A chain; cystine knot, disulfide rich	100.0
2tgi_A	112	Transforming growth factor ,beta 2; 1.80A {Homo sa	100.0
3hh2_A	109	Growth/differentiation factor 8; protein-protein c	100.0
3rjr_A	363	Transforming growth factor beta-1; TGF beta, activ	99.97
2ask_A	113	Artemin; glial cell derived family ligand, neurotr	99.94
1agq_A	135	GDNF, glial cell-derived neurotrophic factor; grow	99.92
1zkz_A	110	Growth/differentiation factor 2; glycoprotein, gro	99.46
2arp_A	116	Inhibin beta A chain; cystine knot, disulfide rich	99.45
2qcq_A	110	Bone morphogenetic protein 3; BMP, TGF-beta, signa	99.44
2h62_A	114	BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-b	99.43
3evs_B	117	Growth/differentiation factor 5; ligand-receptor c	99.43
2r52_A	143	BMP-6, bone morphogenetic protein 6; TGF-beta liga	99.43
1lxi_A	139	Bone morphogenetic protein 7; cystine-knot growth	99.4
3hh2_A	109	Growth/differentiation factor 8; protein-protein c	99.38
2tgi_A	112	Transforming growth factor ,beta 2; 1.80A {Homo sa	99.34
3rjr_A	363	Transforming growth factor beta-1; TGF beta, activ	99.06
2ask_A	113	Artemin; glial cell derived family ligand, neurotr	98.46
1agq_A	135	GDNF, glial cell-derived neurotrophic factor; grow	98.3

>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}

Probab=100.00  E-value=5.2e-39  Score=249.57  Aligned_cols=101  Identities=36%  Similarity=0.830  Sum_probs=96.6

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEE
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRV  202 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~i  202 (225)
                      ...|+|++|+|+|+||||++|||+|++|+|+||.|+|++++...+++||||++|++++..+  .+++|||+|++|++|+|
T Consensus         5 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~~~~~~~~~tnHaivq~l~~~~~~~~~~~pCCvPt~l~~ls~   84 (110)
T 1zkz_A            5 GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLSPISV   84 (110)
T ss_dssp             CCBSEEEEEEEETTTTTCTTTEEECSEEEEEEEESBCCSSCCTTSCCCHHHHHHHHHHHHSTTTSCCCCEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccCCCchHHHHHHHHhcCCCCCCCCcccceeEccEEE
Confidence            3569999999999999999999999999999999999999988899999999999999887  58999999999999999


Q ss_pred             EEEeCCCeEEEe-EeCCeEEccCC
Q psy15092        203 LYQESPYITVLR-YFQDMRVESCG  225 (225)
Q Consensus       203 ly~~~~g~i~~~-~~~nMiV~~Cg  225 (225)
                      ||+|++|+|+++ +|+||+|++||
T Consensus        85 ly~d~~~~v~~~~~~~~Mvv~~Cg  108 (110)
T 1zkz_A           85 LYKDDMGVPTLKYHYEGMSVAECG  108 (110)
T ss_dssp             EEECTTCCEEEEEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEeeEeCCEEEEecc
Confidence            999999999999 99999999997

>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A

Probab=100.00  E-value=4.6e-39  Score=252.40  Aligned_cols=101  Identities=42%  Similarity=0.903  Sum_probs=96.0

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEE
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRV  202 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~i  202 (225)
                      ...|+|++|+|+|+||||++|||+|++|+|+||.|.|++++...+++||||+||++++..+  .+++|||+|++|++|+|
T Consensus        13 ~~~C~r~~l~V~F~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHa~iq~l~~~~~p~~~~~pCCvPt~l~~ls~   92 (117)
T 3evs_B           13 KARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLSPISI   92 (117)
T ss_dssp             -CBSEEECCEEETGGGTGGGTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEHHHCCCcceeeCCCcccceeeeeECCCCcccccCCchHHHHHHHHHhcCCCCCCCCCEeceeeccEEE
Confidence            4569999999999999999999999999999999999999888889999999999999888  78999999999999999


Q ss_pred             EEEeCCCeEEEeEeCCeEEccCC
Q psy15092        203 LYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       203 ly~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      ||+|++++|++++|+||+|++||
T Consensus        93 ly~d~~~~v~~~~~~~Mvv~~Cg  115 (117)
T 3evs_B           93 LFIDSANNVVYKQYEDMVVESCG  115 (117)
T ss_dssp             EEECTTSCEEEEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEcCCeEEeecc
Confidence            99999899999999999999997

>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}

Probab=100.00  E-value=7.5e-39  Score=248.68  Aligned_cols=100  Identities=48%  Similarity=1.016  Sum_probs=95.0

Q ss_pred             CCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC---CCCCCceeccccCceEE
Q psy15092        126 PIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS---GTPGPCCVPETLTPLRV  202 (225)
Q Consensus       126 ~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~---~~~~pCCvP~~~~~l~i  202 (225)
                      ..|+|++|+|+|+||||++|||+|++|+|+||.|.|+++++..++++|||++|++++..+   .+++|||+|++|++|+|
T Consensus         6 ~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~pl~~~~~~tnHa~vq~l~~~~~~~~~~~~pCCvPt~l~~ls~   85 (110)
T 2qcq_A            6 RNCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSLSI   85 (110)
T ss_dssp             SBSEEECCEEETTTTTCTTTEEECSEEECCEEECBCCSSCCGGGCCCHHHHHHHHHHHTCCSTTCCCCCEEECSEEEEEE
T ss_pred             CCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccCCChhHHHHHHHHhccCCCCCCCCcCCCeeEccEEE
Confidence            459999999999999999999999999999999999999888889999999999999875   67899999999999999


Q ss_pred             EEEeCCCeEEEeEeCCeEEccCC
Q psy15092        203 LYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       203 ly~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      ||+|++|++++++|+||+|++||
T Consensus        86 ly~d~~~~v~~~~~~~Mvv~~Cg  108 (110)
T 2qcq_A           86 LFFDENKNVVLKVYPNMTVESCA  108 (110)
T ss_dssp             EEECTTCCEEEEEEEEEEECCEE
T ss_pred             EEEeCCCCEEEEEcCCcEEeecc
Confidence            99999999999999999999997

>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A

Probab=100.00  E-value=3.7e-39  Score=251.88  Aligned_cols=101  Identities=40%  Similarity=0.915  Sum_probs=96.7

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-CCCCCceeccccCceEEE
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-GTPGPCCVPETLTPLRVL  203 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-~~~~pCCvP~~~~~l~il  203 (225)
                      ...|+|++|+|+|+||||++|||+|++|+|+||.|+|++++...+++||||++|++++..+ .++.|||+|++|++|+||
T Consensus        11 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHaivq~l~~~~~~~~~~pCCvPt~l~~is~l   90 (114)
T 2h62_A           11 KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISML   90 (114)
T ss_dssp             CCBSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCTTSEECHHHHHHHHHHHHCTTSCCCCEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEeeecCCcccEEcCCceEeEeeeeECCCCcccccCCchHHHHHHHHHhcCCCCCCCcccceeeccEEEE
Confidence            3569999999999999999999999999999999999999988899999999999999888 789999999999999999


Q ss_pred             EEeCCCeEEEeEeCCeEEccCC
Q psy15092        204 YQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       204 y~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |+|++++|++++|+||+|++||
T Consensus        91 y~d~~~~v~~~~~~~Mvv~~Cg  112 (114)
T 2h62_A           91 YLDENEKVVLKNYQDMVVEGCG  112 (114)
T ss_dssp             EECTTSCEEEEEEEEEEEEEEE
T ss_pred             EEeCCCCEEEEEcCCeEEeccc
Confidence            9999999999999999999997

>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=257.17  Aligned_cols=101  Identities=36%  Similarity=0.854  Sum_probs=96.6

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEE
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRV  202 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~i  202 (225)
                      ...|+|++|+|+|+||||++|||+|++|+|+||.|.|++++...+++||||+||++++.++  .++.|||+|++|++|+|
T Consensus        39 ~~~C~r~~l~VdF~dlGW~dWIiaP~gy~A~yC~G~C~~pl~~~~~~tnHaivq~l~~~~~p~~~~~pCCvPt~l~~is~  118 (143)
T 2r52_A           39 KTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAISV  118 (143)
T ss_dssp             CCBSEEECCEEETTTTTCGGGEEECSEEECCEEESBCCSSCCTTTTBCHHHHHHHHHHHTCTTTSCCCCEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEHhHCCCceeEEcCCceeeeeeeeECCCccccccCCCchHHHHHHHHhcCCCCCCCCCCcceeeccEEE
Confidence            3569999999999999999999999999999999999999988899999999999999888  68999999999999999


Q ss_pred             EEEeCCCeEEEeEeCCeEEccCC
Q psy15092        203 LYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       203 ly~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      ||+|++|+|++++|+||+|++||
T Consensus       119 Ly~d~~~~v~~k~~~~Mvv~~Cg  141 (143)
T 2r52_A          119 LYFDDNSNVILKKYRNMVVRACG  141 (143)
T ss_dssp             EEECTTCCEEEEEEEEEEEEEEE
T ss_pred             EEEECCCCEEEEEcCCeEEeecc
Confidence            99999999999999999999998

>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A

Probab=100.00  E-value=2.5e-38  Score=254.97  Aligned_cols=101  Identities=36%  Similarity=0.890  Sum_probs=96.1

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEE
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRV  202 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~i  202 (225)
                      ...|+|++|+|+|++|||++|||+|++|+|+||.|.|++++...+++||||++|++++.++  .++.|||+|++|++|+|
T Consensus        35 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~pl~~~~~~tnHaivq~l~~~~~p~~~~~pCCvPt~l~~is~  114 (139)
T 1lxi_A           35 RQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISV  114 (139)
T ss_dssp             -CBSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEEEEEE
T ss_pred             CCcceeEEEEEEhhhCCCceeEECCCceeeeeeeeECCCCcccccCCCchHHHHHHHHhcCCCCCCCCCCcCeeeccEEE
Confidence            3569999999999999999999999999999999999999988899999999999999887  68999999999999999


Q ss_pred             EEEeCCCeEEEeEeCCeEEccCC
Q psy15092        203 LYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       203 ly~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      ||+|++++|++++|+||+|++||
T Consensus       115 ly~d~~~~v~~~~~~~Mvv~~Cg  137 (139)
T 1lxi_A          115 LYFDDSSNVILKKYRNMVVRACG  137 (139)
T ss_dssp             EEECTTSCEEEEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEcCCeEEEecc
Confidence            99999999999999999999997

>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*

Probab=100.00  E-value=1.1e-36  Score=238.51  Aligned_cols=104  Identities=34%  Similarity=0.755  Sum_probs=85.9

Q ss_pred             cCCCCCCCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-------CCCCCc
Q psy15092        119 CSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-------GTPGPC  191 (225)
Q Consensus       119 C~G~C~~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-------~~~~pC  191 (225)
                      |.+.  ...|+|++|+|+|+||||++|||+|++|+|+||.|+|++++.. .++|||+++|+++.+..       .+++||
T Consensus         4 c~~~--~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~p~~~-~~~tn~a~~~~~i~~~~~~~~~p~~~~~pC   80 (116)
T 2arp_A            4 CDGK--VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAG-TSGSSLSFHSTVINHYRMRGHSPFANLKSC   80 (116)
T ss_dssp             CCC----CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC----------CCHHHHHHHHTTSTTCSSCCCCCCC
T ss_pred             CCCC--CCCceeEEEEEEhhhcCCcccEECCCceEeEEEeeeCCCCccc-cCCcchHHHHHHHHhhhccccCCCCCCCCc
Confidence            5542  4579999999999999999999999999999999999999874 48899999998876532       467999


Q ss_pred             eeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        192 CVPETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       192 CvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |+|++|++|+|||+|+++++++++|+||+|++||
T Consensus        81 CvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~Cg  114 (116)
T 2arp_A           81 CVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG  114 (116)
T ss_dssp             EEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEE
T ss_pred             cccccCccEEEEEEeCCCCEEEEEcCCeEEeecc
Confidence            9999999999999999999999999999999997

>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A

Probab=100.00  E-value=1.3e-35  Score=231.15  Aligned_cols=104  Identities=30%  Similarity=0.710  Sum_probs=92.9

Q ss_pred             ccccCCCCCCCCCCCCCeeeeec-CCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCce
Q psy15092        116 SYYCSGKCSFPIPKRKPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCC  192 (225)
Q Consensus       116 A~~C~G~C~~~lc~R~~l~V~F~-dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCC  192 (225)
                      ...|.+. ....|+|++|+|+|+ |||| +|||+|++|+|+||.|.|++++..   ++|||++|++++..+  .+++|||
T Consensus         4 ~~~C~~~-~~~~C~r~~l~VdF~~dlGW-~WIiaP~~y~A~yC~G~C~~p~~~---~tnHa~vq~l~~~~~p~~~~~pCC   78 (112)
T 2tgi_A            4 AAYCFRN-VQDNCCLRPLYIDFKRDLGW-KWIHEPKGYNANFCAGACPYLWSS---DTQHSRVLSLYNTINPEASASPCC   78 (112)
T ss_dssp             HHHHTTC-CCSBSEEECCEEEHHHHHCC-TTEEECSEEECCEEECBCCTTSSB---CSHHHHHHHHHHHHCGGGCCCCCE
T ss_pred             cccccCC-CCCCceeEEEEEEhhhhcCC-ceEcCcCcEEEEEeeeECcCCccc---cchhhHHHHHHHhcCCCCCCCCce
Confidence            4457643 456799999999997 9999 799999999999999999998743   699999999998877  6899999


Q ss_pred             eccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        193 VPETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       193 vP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +|++|++|+|||+|++ ++++++|+||+|++||
T Consensus        79 vPt~l~~ls~ly~d~~-~~~~~~~~~Mvv~~Cg  110 (112)
T 2tgi_A           79 VSQDLEPLTILYYIGK-TPKIEQLSNMIVKSCK  110 (112)
T ss_dssp             EECSEEEEEEEEEETT-EEEEEEEEEEEECCEE
T ss_pred             eceeeccEEEEEEeCC-ceEEEEcCCcEEeecc
Confidence            9999999999999975 6889999999999997

>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*

Probab=100.00  E-value=1.3e-34  Score=224.51  Aligned_cols=103  Identities=32%  Similarity=0.762  Sum_probs=89.8

Q ss_pred             ccccCCCCCCCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCcee
Q psy15092        116 SYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCV  193 (225)
Q Consensus       116 A~~C~G~C~~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCv  193 (225)
                      +..|.+.-....|+|++|+|+|+|||| ||||+|++|+|+||.|.|++++.   +.++|+.+   ++.++  .+++|||+
T Consensus         3 ~~~C~~~~~~~~C~r~~l~V~F~dlGW-dWIiaP~~y~a~yC~G~C~~p~~---~~~~h~~l---~~~~~p~~~~~pCCv   75 (109)
T 3hh2_A            3 GLDCDEHSTESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFL---QKYPHTHL---VHQANPRGSAGPCCT   75 (109)
T ss_dssp             SCBCCTTCCCCBSEEECCEEEHHHHTC-TTEEECSEEECCEEECBCCTTTT---CCCHHHHH---HHHHCCTTCCCCCEE
T ss_pred             cccCCCCCCCCCcEEEEEEEeHHHcCC-CeEeCCCcccceeecccCCCccc---ccCchhhh---hhhcCcccCCCceEe
Confidence            345777655578999999999999999 79999999999999999999863   34678753   44444  68999999


Q ss_pred             ccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        194 PETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       194 P~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |++|++|+|||+|++|+|++++|+||+|++||
T Consensus        76 Pt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~Cg  107 (109)
T 3hh2_A           76 PTKMSPINMLYFNGKEQIIYGKIPAMVVDRCG  107 (109)
T ss_dssp             EEEEEEEEEEEECTTCCEEEEEEEEEEEEEEE
T ss_pred             eeeeccEEEEEEeCCCCEEEEEcCCeEEeeeE
Confidence            99999999999999999999999999999997

>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}

Probab=99.97  E-value=7.7e-32  Score=246.91  Aligned_cols=129  Identities=22%  Similarity=0.524  Sum_probs=101.6

Q ss_pred             eeeCeEEEecccCC--cc-c-eeCCCCccccccCCCCCCCCCCCCCeeeeec-CCCccceEeccCccccccccccCCCCC
Q psy15092         91 ERKPLVVKFGDLGW--DQ-W-IIEPQSFQSYYCSGKCSFPIPKRKPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPI  165 (225)
Q Consensus        91 ~r~~l~V~F~dlGw--~~-W-Ii~P~~~~A~~C~G~C~~~lc~R~~l~V~F~-dlGW~dWIiaP~~y~a~yC~G~C~~~~  165 (225)
                      ..+||+|.|.+.+-  +. . ....++....+|.+. ....|||++|+|+|+ |||| +|||+|+||+|+||.|.|++++
T Consensus       226 ~~~PfLv~~~~~~~~~~~~~~~r~kr~~~~~~c~~~-~~~~Ccr~~~~VdF~~dlGW-~WIiaP~gy~a~yC~G~C~~~~  303 (363)
T 3rjr_A          226 MNRPFLLLMATPLERAQHLHSSRHRRALDTNYCFSS-TEKNCCVRQLYIDFRKDLGW-KWIHEPKGYHANFCLGPCPYIW  303 (363)
T ss_dssp             SSCSEEEEEECCHHHHHC--------CBCTTTTTTS-CCCSSEEECCEEEHHHHHCC-CSEEECSEEECCEEESCCCCTT
T ss_pred             cCCcEEEEEecccccccccccccccccccccccccc-ccCCccccceEEEeecccCc-ceecCCCcccceEeeeeCCCCc
Confidence            56788888875321  00 0 011111222346542 345799999999995 9999 7999999999999999999986


Q ss_pred             CCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        166 PKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       166 ~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      .   ++||||+||++++.++  .+++|||+|++|++|+|||++++++ ++++|+||+|++||
T Consensus       304 ~---~~t~ha~v~~l~~~~~p~~~~~pCCvPt~l~~ls~ly~~~~~~-~~~~~~~Mvv~~Cg  361 (363)
T 3rjr_A          304 S---LDTQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKP-KVEQLSNMIVRSCK  361 (363)
T ss_dssp             T---SCSCCHHHHHHTSSCCSSSSSSCCEEECSEEEEEEEEEETTEE-EEEEEEEEEECCEE
T ss_pred             c---CCCchHHHHHHHHhcCCCcCCCCccccccccceEEEEEeCCee-EEEEcCCcEEEecc
Confidence            4   5799999999999887  6899999999999999999998665 56999999999997

>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*

Probab=99.94  E-value=4.2e-28  Score=188.76  Aligned_cols=89  Identities=19%  Similarity=0.353  Sum_probs=78.2

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHH-HHHHHhc--------CCCCCCceecc
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYL-QSAMYLV--------SGTPGPCCVPE  195 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~i-qsll~~~--------~~~~~pCCvP~  195 (225)
                      ...|++++|+|+|+|||| +| ++|++|+|+||+|+|+++      +|||+++ +++++..        ..+++|||+|+
T Consensus        13 ~~~C~l~~l~V~f~dLGw-~~-~ap~~y~a~yC~G~C~~~------~tnHa~vl~~l~~~~~~~~p~~~~~~~~PCCvPt   84 (113)
T 2ask_A           13 ARGCRLRSQLVPVRALGL-GH-RSDELVRFRFCSGSCRRA------RSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPT   84 (113)
T ss_dssp             CCBSEEEEEEEEGGGGSS-SC-CCCCEEEEEEEECBCGGG------CCHHHHHHHHHHHHTCSCCCSSSCCCSSCEEEEE
T ss_pred             CCCceeEEEEEEHHHcCC-Cc-cCcCeeeeeeeeeeCCCC------CCcHHHHHHHHHHhccccCcccCCCCCCCCccCc
Confidence            346999999999999999 77 469999999999999983      6899987 8888865        25789999999


Q ss_pred             ccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        196 TLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       196 ~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +|++|+||  |  +++++++|+||+|++||
T Consensus        85 ~~~~iS~L--d--~~v~~k~~~~Mva~~Cg  110 (113)
T 2ask_A           85 RYEAVSFM--D--VNSTWRTVDRLSATACG  110 (113)
T ss_dssp             EEEEEEEE--C--TTSCEEEEEEEEEEEEE
T ss_pred             eecceEEE--c--CceeeeecCCcEEeecc
Confidence            99999998  3  46899999999999997

>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*

Probab=99.92  E-value=1.2e-26  Score=184.96  Aligned_cols=89  Identities=19%  Similarity=0.342  Sum_probs=75.3

Q ss_pred             CCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHH-HHHHHh--cC--CCCCCceeccccC-
Q psy15092        125 FPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYL-QSAMYL--VS--GTPGPCCVPETLT-  198 (225)
Q Consensus       125 ~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~i-qsll~~--~~--~~~~pCCvP~~~~-  198 (225)
                      ...|++++|+|+|+|||| .| ++|.+|+|+||+|+|++      ++|||++| ++|++.  ++  .+++|||+|++|+ 
T Consensus        39 ~~~C~l~~L~V~f~dLGw-g~-~spe~y~a~yC~G~C~~------~~TNHAivL~~L~~~~~l~p~~vp~PCCvPt~~s~  110 (135)
T 1agq_A           39 NRGCVLTAIHLNVTDLGL-GY-ETKEELIFRYCSGSCEA------AETMYDKILKNLSRSRRLTSDKVGQACCRPVAFDD  110 (135)
T ss_dssp             CTTSEEEEEEEEGGGGCS-SC-CCCCEEEEEEEESCCCS------CCSHHHHHHHHHHHHC------CCCCCEEEEEECC
T ss_pred             CCCceeEEEEEEHHHhCC-Cc-cCcCeeEeeeeeeeCCC------CCccHHHHHHHHHhhcccCCCCCCCCCccCeecCC
Confidence            356888999999999999 55 68999999999999998      37999998 777763  23  7899999999998 


Q ss_pred             ceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        199 PLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       199 ~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +|+||  |  +++++++|+||+|++||
T Consensus       111 ~IS~L--D--~~~v~k~~~~Mva~~CG  133 (135)
T 1agq_A          111 DLSFL--D--DSLVYHILRKHSAKRCG  133 (135)
T ss_dssp             CEEEE--C--TTSCEEEECSCSEEEEE
T ss_pred             CceEE--c--CCcceeecCcceeeccc
Confidence            99999  3  45689999999999998

>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}

Probab=99.46  E-value=1.5e-14  Score=111.74  Aligned_cols=46  Identities=39%  Similarity=1.068  Sum_probs=41.7

Q ss_pred             cCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCC
Q psy15092         87 RQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKP  132 (225)
Q Consensus        87 ~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~  132 (225)
                      ...|+|++|+|+|+|+||++|||+|++|+|+||.|.|++++-...+
T Consensus         5 ~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~~~~~~~~   50 (110)
T 1zkz_A            5 GSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVT   50 (110)
T ss_dssp             CCBSEEEEEEEETTTTTCTTTEEECSEEEEEEEESBCCSSCCTTSC
T ss_pred             CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCcccccC
Confidence            4579999999999999999999999999999999999998765444

>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*

Probab=99.45  E-value=1.2e-14  Score=113.21  Aligned_cols=43  Identities=37%  Similarity=1.008  Sum_probs=37.1

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIP  128 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc  128 (225)
                      ....|+|++|+|+|+|+||++|||+|++|+|+||.|.|++++-
T Consensus         7 ~~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~p~~   49 (116)
T 2arp_A            7 KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIA   49 (116)
T ss_dssp             --CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC---
T ss_pred             CCCCceeEEEEEEhhhcCCcccEECCCceEeEEEeeeCCCCcc
Confidence            4467999999999999999999999999999999999998876

>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}

Probab=99.44  E-value=2.1e-14  Score=110.89  Aligned_cols=43  Identities=56%  Similarity=1.388  Sum_probs=39.5

Q ss_pred             cCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCC
Q psy15092         87 RQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPK  129 (225)
Q Consensus        87 ~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~  129 (225)
                      ...|+|++|+|+|+|+||++|||+|++|+|+||.|.|++++..
T Consensus         5 ~~~C~r~~l~VdF~dlGW~~WIiaP~~y~a~yC~G~C~~pl~~   47 (110)
T 2qcq_A            5 PRNCARRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPK   47 (110)
T ss_dssp             CSBSEEECCEEETTTTTCTTTEEECSEEECCEEECBCCSSCCG
T ss_pred             CCCcEEEEEEEEeeccCCcceEECCCceEeEEeEeECCCCccc
Confidence            3469999999999999999999999999999999999987653

>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A

Probab=99.43  E-value=2e-14  Score=111.72  Aligned_cols=46  Identities=41%  Similarity=1.232  Sum_probs=41.0

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRK  131 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~  131 (225)
                      ....|+|++|+|+|+|+||++|||+|++|+|+||.|.|++++....
T Consensus        10 ~~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~   55 (114)
T 2h62_A           10 LKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHL   55 (114)
T ss_dssp             -CCBSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCTTS
T ss_pred             CCCCceeEEEEEEeeecCCcccEEcCCceEeEeeeeECCCCccccc
Confidence            3457999999999999999999999999999999999999876443

>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A

Probab=99.43  E-value=2.5e-14  Score=111.69  Aligned_cols=44  Identities=43%  Similarity=1.134  Sum_probs=39.5

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPK  129 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~  129 (225)
                      ....|+|++|+|+|.|+||++|||+|++|+|+||.|.|++++-.
T Consensus        12 ~~~~C~r~~l~V~F~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~   55 (117)
T 3evs_B           12 LKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRS   55 (117)
T ss_dssp             --CBSEEECCEEETGGGTGGGTEEECSEEECCEEESBCCSSCCG
T ss_pred             CCCCcEEEEEEEEHHHCCCcceeeCCCcccceeeeeECCCCccc
Confidence            34579999999999999999999999999999999999987654

>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}

Probab=99.43  E-value=4e-14  Score=114.17  Aligned_cols=48  Identities=40%  Similarity=1.047  Sum_probs=42.1

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCe
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPL  133 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l  133 (225)
                      ....|+|++|+|+|.|+||++|||+|++|+|+||.|.|++++-...+.
T Consensus        38 ~~~~C~r~~l~VdF~dlGW~dWIiaP~gy~A~yC~G~C~~pl~~~~~~   85 (143)
T 2r52_A           38 LKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNA   85 (143)
T ss_dssp             -CCBSEEECCEEETTTTTCGGGEEECSEEECCEEESBCCSSCCTTTTB
T ss_pred             CCCCceEEEEEEEHhHCCCceeEEcCCceeeeeeeeECCCccccccCC
Confidence            456799999999999999999999999999999999999987654443

>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A

Probab=99.40  E-value=3.1e-14  Score=114.30  Aligned_cols=47  Identities=45%  Similarity=1.176  Sum_probs=40.9

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKP  132 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~  132 (225)
                      ....|+|++|+|+|.|+||++|||+|++|+|+||.|.|++++-...+
T Consensus        34 ~~~~C~r~~l~VdF~dlGW~~WIiaP~gy~a~yC~G~C~~pl~~~~~   80 (139)
T 1lxi_A           34 QRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMN   80 (139)
T ss_dssp             --CBSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGC
T ss_pred             CCCcceeEEEEEEhhhCCCceeEECCCceeeeeeeeECCCCcccccC
Confidence            34679999999999999999999999999999999999998764433

>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*

Probab=99.38  E-value=6.5e-14  Score=108.03  Aligned_cols=41  Identities=44%  Similarity=1.128  Sum_probs=37.9

Q ss_pred             cCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCC
Q psy15092         87 RQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIP  128 (225)
Q Consensus        87 ~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc  128 (225)
                      ...|+|++|+|+|+|+|| +|||+|++|+|+||.|.|++++-
T Consensus        12 ~~~C~r~~l~V~F~dlGW-dWIiaP~~y~a~yC~G~C~~p~~   52 (109)
T 3hh2_A           12 ESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFL   52 (109)
T ss_dssp             CCBSEEECCEEEHHHHTC-TTEEECSEEECCEEECBCCTTTT
T ss_pred             CCCcEEEEEEEeHHHcCC-CeEeCCCcccceeecccCCCccc
Confidence            457999999999999999 59999999999999999998764

>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A

Probab=99.34  E-value=1.6e-13  Score=106.34  Aligned_cols=43  Identities=35%  Similarity=1.039  Sum_probs=38.7

Q ss_pred             ccCCeeeeCeEEEec-ccCCccceeCCCCccccccCCCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIPK  129 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~-dlGw~~WIi~P~~~~A~~C~G~C~~~lc~  129 (225)
                      ....|+|++|+|+|+ |+|| +|||+|++|+|+||.|.|++++-.
T Consensus        11 ~~~~C~r~~l~VdF~~dlGW-~WIiaP~~y~A~yC~G~C~~p~~~   54 (112)
T 2tgi_A           11 VQDNCCLRPLYIDFKRDLGW-KWIHEPKGYNANFCAGACPYLWSS   54 (112)
T ss_dssp             CCSBSEEECCEEEHHHHHCC-TTEEECSEEECCEEECBCCTTSSB
T ss_pred             CCCCceeEEEEEEhhhhcCC-ceEcCcCcEEEEEeeeECcCCccc
Confidence            456799999999998 9999 599999999999999999987653

>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}

Probab=99.06  E-value=2.4e-11  Score=111.13  Aligned_cols=41  Identities=34%  Similarity=1.006  Sum_probs=37.4

Q ss_pred             cCCeeeeCeEEEec-ccCCccceeCCCCccccccCCCCCCCCC
Q psy15092         87 RQSCERKPLVVKFG-DLGWDQWIIEPQSFQSYYCSGKCSFPIP  128 (225)
Q Consensus        87 ~~~C~r~~l~V~F~-dlGw~~WIi~P~~~~A~~C~G~C~~~lc  128 (225)
                      ...|+|++|+|+|. |+|| +|||+|+||+|+||.|.|++++-
T Consensus       263 ~~~Ccr~~~~VdF~~dlGW-~WIiaP~gy~a~yC~G~C~~~~~  304 (363)
T 3rjr_A          263 EKNCCVRQLYIDFRKDLGW-KWIHEPKGYHANFCLGPCPYIWS  304 (363)
T ss_dssp             CCSSEEECCEEEHHHHHCC-CSEEECSEEECCEEESCCCCTTT
T ss_pred             cCCccccceEEEeecccCc-ceecCCCcccceEeeeeCCCCcc
Confidence            35799999999996 9999 69999999999999999998764

>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*

Probab=98.46  E-value=3.3e-08  Score=76.50  Aligned_cols=39  Identities=21%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFP  126 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~  126 (225)
                      ....|++++|+|+|+|+||+ |+ +|+.|.|+||+|.|+++
T Consensus        12 ~~~~C~l~~l~V~f~dLGw~-~~-ap~~y~a~yC~G~C~~~   50 (113)
T 2ask_A           12 GARGCRLRSQLVPVRALGLG-HR-SDELVRFRFCSGSCRRA   50 (113)
T ss_dssp             -CCBSEEEEEEEEGGGGSSS-CC-CCCEEEEEEEECBCGGG
T ss_pred             CCCCceeEEEEEEHHHcCCC-cc-CcCeeeeeeeeeeCCCC
Confidence            34579999999999999997 54 59999999999999884

>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*

Probab=98.30  E-value=1.9e-07  Score=74.24  Aligned_cols=39  Identities=23%  Similarity=0.491  Sum_probs=34.3

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFP  126 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~  126 (225)
                      ....|++++|+|+|.|+||+.  ++|.+|.|+||+|.|+++
T Consensus        38 ~~~~C~l~~L~V~f~dLGwg~--~spe~y~a~yC~G~C~~~   76 (135)
T 1agq_A           38 KNRGCVLTAIHLNVTDLGLGY--ETKEELIFRYCSGSCEAA   76 (135)
T ss_dssp             -CTTSEEEEEEEEGGGGCSSC--CCCCEEEEEEEESCCCSC
T ss_pred             CCCCceeEEEEEEHHHhCCCc--cCcCeeEeeeeeeeCCCC
Confidence            456799999999999999974  579999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d2h62a1	103	g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (	2e-32
d1lxia_	104	g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7)	1e-31
d2arpa1	116	g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Hum	2e-28
d2tgia_	112	g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [Tax	4e-27
d1agqa_	97	g.17.1.2 (A:) Glial cell-derived neurotrophic fact	8e-19

>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-2 (BMP-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 1/98 (1%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV-SGT 187
           KR PL V F D+GW+ WI+ P  + ++YC G+C FP+   L  ++HA +Q+ +  V S  
Sbjct: 4   KRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKI 63

Query: 188 PGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           P  CCVP  L+ + +LY +     VL+ +QDM VE CG
Sbjct: 64  PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCG 101

>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-7 (BMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 1e-31
 Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
           K+  L V F DLGW  WII P+ + +YYC G+C+FP+   +  ++HA +Q+ ++ +    
Sbjct: 4   KKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPET 63

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
            P PCC P  L  + VLY +     +L+ +++M V +CG
Sbjct: 64  VPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACG 102

>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Activin A (Inhibin beta A)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 2e-28
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---- 184
            +K   V F D+GW+ WII P  + + YC G+C   I      SS ++  + +       
Sbjct: 12  CKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTS-GSSLSFHSTVINHYRMRG 70

Query: 185 ---SGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                    CCVP  L P+ +LY +     + +  Q+M VE CG
Sbjct: 71  HSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG 114

>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: TGF-beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.1 bits (244), Expect = 4e-27
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV--SG 186
             +PL + F      +WI EP+ + + +C+G C +      + + H+ + S    +    
Sbjct: 16  CLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLW---SSDTQHSRVLSLYNTINPEA 72

Query: 187 TPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
           +  PCCV + L PL +LY        +    +M V+SC 
Sbjct: 73  SASPCCVSQDLEPLTILYYIGKTP-KIEQLSNMIVKSCK 110

>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Glial cell-derived neurotrophic factor, GDNF
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.1 bits (187), Expect = 8e-19
 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 16/102 (15%)

Query: 129 KRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLV---- 184
               + +   DLG        +     YCSG C          + +  +   +       
Sbjct: 5   VLTAIHLNVTDLGLG--YETKEELIFRYCSGSCEAA------ETMYDKILKNLSRSRRLT 56

Query: 185 -SGTPGPCCVPETLTPLRVLYQESPYITVLRYFQDMRVESCG 225
                  CC P           +S    V    +    + CG
Sbjct: 57  SDKVGQACCRPVAFDDDLSFLDDS---LVYHILRKHSAKRCG 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1lxia_	104	Bone morphogenetic protein-7 (BMP-7) {Human (Homo	100.0
d2h62a1	103	Bone morphogenetic protein-2 (BMP-2) {Human (Homo	100.0
d2arpa1	116	Activin A (Inhibin beta A) {Human (Homo sapiens) [	100.0
d2tgia_	112	TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1agqa_	97	Glial cell-derived neurotrophic factor, GDNF {Rat	99.95
d2arpa1	116	Activin A (Inhibin beta A) {Human (Homo sapiens) [	99.42
d1lxia_	104	Bone morphogenetic protein-7 (BMP-7) {Human (Homo	99.41
d2h62a1	103	Bone morphogenetic protein-2 (BMP-2) {Human (Homo	99.41
d2tgia_	112	TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1agqa_	97	Glial cell-derived neurotrophic factor, GDNF {Rat	98.74

>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-7 (BMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-39  Score=244.78  Aligned_cols=99  Identities=36%  Similarity=0.919  Sum_probs=95.5

Q ss_pred             CCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCceeccccCceEEEE
Q psy15092        127 IPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCVPETLTPLRVLY  204 (225)
Q Consensus       127 lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCvP~~~~~l~ily  204 (225)
                      .|+|++|+|+|+||||++|||+|++|+|+||.|.|++++...++++|||++|++++..+  .+++|||+|++|++|+|||
T Consensus         2 ~C~r~~~~V~F~~lGW~~WIi~P~~y~a~~C~G~C~~p~~~~~~~~~ha~i~~~~~~~~~~~~~~pCC~Pt~~~~lsily   81 (104)
T d1lxia_           2 ACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPKPCCAPTQLNAISVLY   81 (104)
T ss_dssp             BSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGCCCHHHHHHHHHHHHCTTTCCCCCEEEEEEEEEEEEE
T ss_pred             CceeeeeEEEeeecCCcceEEccCccccEECcCCCCCcccccCCCCchhhhhhhhhhcCCCCCCCCccccccccCEEEEE
Confidence            48999999999999998899999999999999999999988899999999999999888  7899999999999999999


Q ss_pred             EeCCCeEEEeEeCCeEEccCC
Q psy15092        205 QESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       205 ~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      +|++|++++++|+||+|++||
T Consensus        82 ~d~~~~i~~~~~~~Mvv~~Cg  102 (104)
T d1lxia_          82 FDDSSNVILKKYRNMVVRACG  102 (104)
T ss_dssp             ECTTSCEEEEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEcCCcEEEeee
Confidence            999999999999999999997

>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-2 (BMP-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=242.38  Aligned_cols=99  Identities=40%  Similarity=0.943  Sum_probs=95.5

Q ss_pred             CCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-CCCCCceeccccCceEEEEE
Q psy15092        127 IPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-GTPGPCCVPETLTPLRVLYQ  205 (225)
Q Consensus       127 lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-~~~~pCCvP~~~~~l~ily~  205 (225)
                      -|+|++|+|+|+||||++|||+|++|+|+||.|.|++++...++++|||+||++++..+ .+++|||+|++|++|+|||+
T Consensus         2 ~C~r~~l~VdF~~lGW~~wIi~P~~y~a~~C~G~C~~~~~~~~~~t~ha~i~~l~~~~~~~~~~~CC~Pt~~~~l~~ly~   81 (103)
T d2h62a1           2 SCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYL   81 (103)
T ss_dssp             BSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCTTSEECHHHHHHHHHHHHCTTSCCCCEEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEhhccCCcceEEcCCccccceecccCCcccccccCCccHHHHHHHHhhcCCCCCCCCcccceeeCEEEEEE
Confidence            48999999999999998899999999999999999999988899999999999999888 88999999999999999999


Q ss_pred             eCCCeEEEeEeCCeEEccCC
Q psy15092        206 ESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       206 ~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |++++|+++++|||+|++||
T Consensus        82 d~~~~i~~~~~~nMvv~~Cg  101 (103)
T d2h62a1          82 DENEKVVLKNYQDMVVEGCG  101 (103)
T ss_dssp             CTTSCEEEEEEEEEEEEEEE
T ss_pred             eCCCCEEEEECCCcEeeccc
Confidence            99999999999999999997

>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Activin A (Inhibin beta A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-35  Score=226.88  Aligned_cols=106  Identities=33%  Similarity=0.719  Sum_probs=84.8

Q ss_pred             ccCCCCCCCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCC--CCchHHHHHHHHhcC----CCCCCc
Q psy15092        118 YCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALA--PSSHAYLQSAMYLVS----GTPGPC  191 (225)
Q Consensus       118 ~C~G~C~~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~--~tnha~iqsll~~~~----~~~~pC  191 (225)
                      .|.+.  ...|+|++|+|+|++|||++|||+|++|+|+||.|.|++++...++  .++|+.++..+....    .+++||
T Consensus         3 ~c~~~--~~~Ccr~~~~VdF~~lgW~~WIiaP~~y~a~~C~G~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~pC   80 (116)
T d2arpa1           3 ECDGK--VNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHSPFANLKSC   80 (116)
T ss_dssp             SCCC----CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC---------CCHHHHHHHHTTSTTCSSCCCCCCC
T ss_pred             CCCCC--CCceEEEEEEEEeeecCCcceEECCCccccceecccCCCcccccCCccHHHHHHHHHHHhhhccCCCCCCCCC
Confidence            36553  4679999999999999998899999999999999999998755433  344666655544332    578999


Q ss_pred             eeccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        192 CVPETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       192 CvP~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |+|++|++|+|||++++++|++++|+||+|++||
T Consensus        81 CvP~~~~~l~ily~d~~~~i~~~~~~nMvv~~Cg  114 (116)
T d2arpa1          81 CVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECG  114 (116)
T ss_dssp             EEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEE
T ss_pred             cccceecCEEEEEEeCCCeEEEEECCCcEEeccC
Confidence            9999999999999999999999999999999997

>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: TGF-beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=222.06  Aligned_cols=105  Identities=26%  Similarity=0.555  Sum_probs=90.9

Q ss_pred             ccccCCCCCCCCCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC--CCCCCcee
Q psy15092        116 SYYCSGKCSFPIPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS--GTPGPCCV  193 (225)
Q Consensus       116 A~~C~G~C~~~lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~--~~~~pCCv  193 (225)
                      +++|.+.- ...|+|++|+|+|+++||.+|||+|++|+|+||.|.|++++.   +.+||+++|++++..+  .+++|||+
T Consensus         4 ~~~c~~~~-~~~Ccr~~~~V~F~~~~~~~WIi~P~~y~a~yC~G~C~~~~~---~~tnha~i~~~~~~~~~~~~~~pCCv   79 (112)
T d2tgia_           4 AAYCFRNV-QDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWS---SDTQHSRVLSLYNTINPEASASPCCV   79 (112)
T ss_dssp             HHHHTTCC-CSBSEEECCEEEHHHHHCCTTEEECSEEECCEEECBCCTTSS---BCSHHHHHHHHHHHHCGGGCCCCCEE
T ss_pred             cccccCCC-CCCceEEEEEEEEEecCCccceecCCceEeEEecCCCcCCcc---CCCcchhhhhhhhccCCCCCCCCCEe
Confidence            45565542 346999999999987555489999999999999999999863   5589999999999888  78999999


Q ss_pred             ccccCceEEEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        194 PETLTPLRVLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       194 P~~~~~l~ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |++|++|+|||+++++ +++++|+||+|++||
T Consensus        80 P~~~~~lsily~~~~~-~~~~~~~~Mvv~~Cg  110 (112)
T d2tgia_          80 SQDLEPLTILYYIGKT-PKIEQLSNMIVKSCK  110 (112)
T ss_dssp             ECSEEEEEEEEEETTE-EEEEEEEEEEECCEE
T ss_pred             eeeecCEEEEEEECCE-EEEEEcCCeEEeeee
Confidence            9999999999999866 566899999999997

>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Glial cell-derived neurotrophic factor, GDNF
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.8e-29  Score=188.85  Aligned_cols=88  Identities=17%  Similarity=0.341  Sum_probs=76.4

Q ss_pred             CCCCCCeeeeecCCCccceEeccCccccccccccCCCCCCCCCCCCchHHHHHHHHhcC-----CCCCCceeccccCceE
Q psy15092        127 IPKRKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKALAPSSHAYLQSAMYLVS-----GTPGPCCVPETLTPLR  201 (225)
Q Consensus       127 lc~R~~l~V~F~dlGW~dWIiaP~~y~a~yC~G~C~~~~~~~~~~tnha~iqsll~~~~-----~~~~pCCvP~~~~~l~  201 (225)
                      .|+++.|+|+|+|||| +| |+|++|+|+||.|+|+.      +++||+.+++++.+.+     .+++|||+|++|++ .
T Consensus         3 ~C~~~~~~v~f~elGw-~~-~~p~~~~~~YC~G~C~~------~~t~ha~i~~~l~~~~~~~~~~~~~PCCvPtk~~~-~   73 (97)
T d1agqa_           3 GCVLTAIHLNVTDLGL-GY-ETKEELIFRYCSGSCEA------AETMYDKILKNLSRSRRLTSDKVGQACCRPVAFDD-D   73 (97)
T ss_dssp             TSEEEEEEEEGGGGCS-SC-CCCCEEEEEEEESCCCS------CCSHHHHHHHHHHHHC------CCCCCEEEEEECC-C
T ss_pred             cceeeEEEEEHHHcCC-ce-ecCCeeeeeeeccCCCC------CCccHHHHHHHHHHhcccCCCCCCCCceecccccc-e
Confidence            4899999999999999 56 69999999999999976      4589999998886543     67899999999999 6


Q ss_pred             EEEEeCCCeEEEeEeCCeEEccCC
Q psy15092        202 VLYQESPYITVLRYFQDMRVESCG  225 (225)
Q Consensus       202 ily~~~~g~i~~~~~~nMiV~~Cg  225 (225)
                      |+|+|+  +++++++|||+|++||
T Consensus        74 ~l~~d~--~i~~~~~~~Mvv~~Cg   95 (97)
T d1agqa_          74 LSFLDD--SLVYHILRKHSAKRCG   95 (97)
T ss_dssp             EEEECT--TSCEEEECSCSEEEEE
T ss_pred             EEEEcC--CEEEEEcCCcEeeccc
Confidence            888874  4678899999999997

>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Activin A (Inhibin beta A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-14  Score=111.66  Aligned_cols=47  Identities=34%  Similarity=0.902  Sum_probs=36.9

Q ss_pred             ccCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCC
Q psy15092         86 SRQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKP  132 (225)
Q Consensus        86 ~~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~  132 (225)
                      ....|+|++|+|+|+++||++|||+|++|+|+||.|.|++++-....
T Consensus         7 ~~~~Ccr~~~~VdF~~lgW~~WIiaP~~y~a~~C~G~C~~~~~~~~~   53 (116)
T d2arpa1           7 KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSG   53 (116)
T ss_dssp             --CCSEEECCEEEHHHHTCTTTEEECSEEECCEEESCCCC-------
T ss_pred             CCCceEEEEEEEEeeecCCcceEECCCccccceecccCCCcccccCC
Confidence            34579999999999999999999999999999999999987754433

>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-7 (BMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-14  Score=109.63  Aligned_cols=45  Identities=42%  Similarity=1.163  Sum_probs=40.4

Q ss_pred             CeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCe
Q psy15092         89 SCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPL  133 (225)
Q Consensus        89 ~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l  133 (225)
                      .|+|++|+|+|+|+||++|||+|++|+|+||.|.|++++-...+.
T Consensus         2 ~C~r~~~~V~F~~lGW~~WIi~P~~y~a~~C~G~C~~p~~~~~~~   46 (104)
T d1lxia_           2 ACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNA   46 (104)
T ss_dssp             BSEEECCEEEHHHHTCTTTEEECSEEECCEEESBCCSSCCGGGCC
T ss_pred             CceeeeeEEEeeecCCcceEEccCccccEECcCCCCCcccccCCC
Confidence            599999999999999999999999999999999999887644443

>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Bone morphogenetic protein-2 (BMP-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.6e-14  Score=108.58  Aligned_cols=45  Identities=42%  Similarity=1.232  Sum_probs=40.8

Q ss_pred             CeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCCCCCCe
Q psy15092         89 SCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIPKRKPL  133 (225)
Q Consensus        89 ~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc~R~~l  133 (225)
                      .|+|++|+|+|.|+||++|||+|++|+|+||.|.|++++-...+.
T Consensus         2 ~C~r~~l~VdF~~lGW~~wIi~P~~y~a~~C~G~C~~~~~~~~~~   46 (103)
T d2h62a1           2 SCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNS   46 (103)
T ss_dssp             BSEEECCEEEHHHHTCTTTEEECSEEECCEEECBCCSSCCTTSEE
T ss_pred             CceEEEEEEEhhccCCcceEEcCCccccceecccCCcccccccCC
Confidence            599999999999999999999999999999999999887655443

>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: TGF-beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.5e-13  Score=100.68  Aligned_cols=42  Identities=26%  Similarity=0.696  Sum_probs=37.1

Q ss_pred             cCCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCCCC
Q psy15092         87 RQSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFPIP  128 (225)
Q Consensus        87 ~~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~lc  128 (225)
                      ...|+|++|+|+|.+++|.+|||+|++|+|+||.|.|++++-
T Consensus        12 ~~~Ccr~~~~V~F~~~~~~~WIi~P~~y~a~yC~G~C~~~~~   53 (112)
T d2tgia_          12 QDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWS   53 (112)
T ss_dssp             CSBSEEECCEEEHHHHHCCTTEEECSEEECCEEECBCCTTSS
T ss_pred             CCCceEEEEEEEEEecCCccceecCCceEeEEecCCCcCCcc
Confidence            356999999999998766679999999999999999988764

>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Cystine-knot cytokines
superfamily: Cystine-knot cytokines
family: Transforming growth factor (TGF)-beta
domain: Glial cell-derived neurotrophic factor, GDNF
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.3e-09  Score=80.41  Aligned_cols=37  Identities=24%  Similarity=0.566  Sum_probs=33.6

Q ss_pred             CCeeeeCeEEEecccCCccceeCCCCccccccCCCCCCC
Q psy15092         88 QSCERKPLVVKFGDLGWDQWIIEPQSFQSYYCSGKCSFP  126 (225)
Q Consensus        88 ~~C~r~~l~V~F~dlGw~~WIi~P~~~~A~~C~G~C~~~  126 (225)
                      ..|+|+.|+|+|+||||+ | |+|++|.++||.|.|+.+
T Consensus         2 ~~C~~~~~~v~f~elGw~-~-~~p~~~~~~YC~G~C~~~   38 (97)
T d1agqa_           2 RGCVLTAIHLNVTDLGLG-Y-ETKEELIFRYCSGSCEAA   38 (97)
T ss_dssp             TTSEEEEEEEEGGGGCSS-C-CCCCEEEEEEEESCCCSC
T ss_pred             CcceeeEEEEEHHHcCCc-e-ecCCeeeeeeeccCCCCC
Confidence            359999999999999998 6 599999999999999754