Psyllid ID: psy15153

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPGADFIRKG
Secondary Structure (PSIPRED)
cccccHHHHcccHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccHHHHHHHHcccHHccccHHHHHHHHHHHccccEEcccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHcHcHHccccHHHHHHHHHHHcccccEcccccHHHHHHHHHHHcHHHHHHHHccccccEEEEEcccccHHEccc
Coil and Loop (DISEMBL)
mwlttneaSLMGAEEVAARLRVDCRSGLWWKEAELRRQLIgynefcvkeeDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIgynefcvkeeDPLWRKYIEQVRKSVFLLFFYcfpfstkfsvrfppgadfirkg
Flexible Loop (DISEMBL)
mwlttneaslmgaEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFstkfsvrfppgadfirkg
Low Complexity Region (SEG)
MWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPGADFIRKG
Disordered region (IsUnstruct)
************AEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPG*******
Disordered Region (DISOPRED)
*W*T***ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPGADFIRK*
Disordered Region (DISEMBL)
********SLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPGADFIRKG
Disordered Region (DISPRO)
*******ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPGADFI**G
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPGADFIRKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q64566	919	Calcium-transporting ATPa	yes	N/A	0.420	0.077	0.380	5e-09
Q80XR2	918	Calcium-transporting ATPa	no	N/A	0.420	0.077	0.380	5e-09
Q5R5K5	918	Calcium-transporting ATPa	yes	N/A	0.420	0.077	0.380	2e-08
P98194	919	Calcium-transporting ATPa	yes	N/A	0.420	0.077	0.380	2e-08
P57709	953	Calcium-transporting ATPa	yes	N/A	0.420	0.074	0.380	2e-08
Q8R4C1	944	Calcium-transporting ATPa	no	N/A	0.420	0.075	0.366	9e-06
A7L9Z8	944	Calcium-transporting ATPa	no	N/A	0.420	0.075	0.366	1e-05

>sp|Q64566|AT2C1_RAT Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 3  LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
          LT+  AS +   EVA  L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct: 21 LTSKRASELAVSEVAGLLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query: 63 KSVFLLFFIAS 73
            + +L   ++
Sbjct: 81 NPLIMLLLASA 91

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8

>sp|Q80XR2|AT2C1_MOUSE Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 42/71 (59%)

Query: 3  LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
          LT+  AS +   EVA  L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct: 21 LTSKRASELAVSEVAGLLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query: 63 KSVFLLFFIAS 73
            + +L   ++
Sbjct: 81 NPLIMLLLASA 91

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q5R5K5|AT2C1_PONAB Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii GN=ATP2C1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 3  LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
          LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct: 21 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query: 63 KSVFLLFFIAS 73
            + +L   ++
Sbjct: 81 NPLIMLLLASA 91

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P98194|AT2C1_HUMAN Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 3  LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
          LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct: 21 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query: 63 KSVFLLFFIAS 73
            + +L   ++
Sbjct: 81 NPLIMLLLASA 91

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P57709|AT2C1_BOVIN Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 3   LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
           LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct: 55  LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 114

Query: 63  KSVFLLFFIAS 73
             + +L   ++
Sbjct: 115 NPLIMLLLASA 125

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q8R4C1|AT2C2_RAT Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%)

Query: 3   LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
           L   EA     EE+A    VD  SGL       RR + G+NEF     +P+W+KY++Q R
Sbjct: 50  LPPREACKCSKEELARTFHVDLDSGLSEFAVAQRRLVHGWNEFVTDNTEPVWKKYLDQFR 109

Query: 63  KSVFLLFFIAS 73
             + LL   +S
Sbjct: 110 NPLILLLLGSS 120

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|A7L9Z8|AT2C2_MOUSE Calcium-transporting ATPase type 2C member 2 OS=Mus musculus GN=Atp2c2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%)

Query: 3   LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
           L   EA     EE+A    VD  SGL       RR + G+NEF     +P+W+KY++Q R
Sbjct: 50  LPPGEACKCSREELARAFHVDLDSGLSEFAVAQRRLVHGWNEFVTDNAEPVWKKYLDQFR 109

Query: 63  KSVFLLFFIAS 73
             + LL   +S
Sbjct: 110 NPLILLLLGSS 120

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
357606737	1033	hypothetical protein KGM_11072 [Danaus p	0.852	0.139	0.463	1e-30
383848721	941	PREDICTED: calcium-transporting ATPase t	0.437	0.078	0.648	1e-23
350396138	932	PREDICTED: calcium-transporting ATPase t	0.420	0.076	0.647	1e-22
350396135	944	PREDICTED: calcium-transporting ATPase t	0.420	0.075	0.647	1e-22
340719177	944	PREDICTED: calcium-transporting ATPase t	0.420	0.075	0.647	3e-22
307170158	909	Calcium-transporting ATPase type 2C memb	0.467	0.086	0.612	5e-22
328705324	937	PREDICTED: calcium-transporting ATPase t	0.461	0.083	0.615	1e-21
380012583	944	PREDICTED: calcium-transporting ATPase t	0.431	0.077	0.589	2e-21
328781034	944	PREDICTED: calcium-transporting ATPase t	0.431	0.077	0.589	3e-21
332027655	943	Calcium-transporting ATPase type 2C memb	0.420	0.075	0.647	7e-21

>gi|357606737|gb|EHJ65189.1| hypothetical protein KGM_11072 [Danaus plexippus]

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/151 (46%), Positives = 94/151 (62%), Gaps = 7/151 (4%)

Query: 1   MWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
           MW++  E+S++  EEVA RL+VD R GL W++A  R   +G NEF VKE++PLWRKYIEQ
Sbjct: 50  MWISAVESSILSWEEVAERLQVDVRRGLTWRDANDRMNFVGPNEFQVKEQEPLWRKYIEQ 109

Query: 61  VRKSVFLLF-----FIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQL 115
            +  + LL      FI   E   +  +  +   A  VA RL+VD R GL W++A  R   
Sbjct: 110 FQNPLILLLLASQVFIYDLETFGMRCDVRTCGIA--VAERLQVDVRRGLTWRDANDRMNF 167

Query: 116 IGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 146
           +G NEF VKE++PLWRKYIEQ +  + LL  
Sbjct: 168 VGPNEFQVKEQEPLWRKYIEQFQNPLILLLL 198

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848721|ref|XP_003699996.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Megachile rotundata]

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 73  SKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRK 132
           SK EMWLTT EA+ +GAEEVAARL VD R+GLWW+EA+ RRQL+G+NEF VKEE+P W+K
Sbjct: 38  SKPEMWLTTAEAASLGAEEVAARLHVDVRTGLWWQEADHRRQLVGFNEFSVKEEEPTWKK 97

Query: 133 YIEQVRKSVFLLFF 146
           Y+EQ +  + LL  
Sbjct: 98  YLEQFKNPLILLLL 111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396138|ref|XP_003484455.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform 2 [Bombus impatiens]

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 58/71 (81%)

Query: 76  EMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIE 135
           EMWLTT EA+ +GAEEVAARL VD R+GLWW+EA+ RRQL+G+NEF VKEE+P W+KY+E
Sbjct: 44  EMWLTTAEAASLGAEEVAARLHVDIRTGLWWQEADHRRQLVGFNEFSVKEEEPTWKKYLE 103

Query: 136 QVRKSVFLLFF 146
           Q +  + LL  
Sbjct: 104 QFKNPLILLLL 114

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396135|ref|XP_003484454.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform 1 [Bombus impatiens]

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 58/71 (81%)

Query: 76  EMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIE 135
           EMWLTT EA+ +GAEEVAARL VD R+GLWW+EA+ RRQL+G+NEF VKEE+P W+KY+E
Sbjct: 44  EMWLTTAEAASLGAEEVAARLHVDIRTGLWWQEADHRRQLVGFNEFSVKEEEPTWKKYLE 103

Query: 136 QVRKSVFLLFF 146
           Q +  + LL  
Sbjct: 104 QFKNPLILLLL 114

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719177|ref|XP_003398033.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Bombus terrestris]

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 58/71 (81%)

Query: 76  EMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIE 135
           EMWLTT EA+ +GAEEVAARL VD R+GLWW+EA+ RRQL+G+NEF VKEE+P W+KY+E
Sbjct: 44  EMWLTTAEAASLGAEEVAARLHVDIRTGLWWQEADHRRQLVGFNEFRVKEEEPTWKKYLE 103

Query: 136 QVRKSVFLLFF 146
           Q +  + LL  
Sbjct: 104 QFKNPLILLLL 114

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170158|gb|EFN62566.1| Calcium-transporting ATPase type 2C member 1 [Camponotus floridanus]

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 1/80 (1%)

Query: 68  LFFIASKE-EMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEE 126
           +F+   K+ EMWLTT E++ +GAEEVAARL VD R+GL W+EA+ RRQLIG+NEF VKEE
Sbjct: 1   MFYTKDKDPEMWLTTAESASLGAEEVAARLHVDVRTGLTWQEADHRRQLIGFNEFTVKEE 60

Query: 127 DPLWRKYIEQVRKSVFLLFF 146
           DP W+KYIEQ +  + LL  
Sbjct: 61  DPPWKKYIEQFKNPLILLLL 80

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705324|ref|XP_001950200.2| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Acyrthosiphon pisum]

 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 56/78 (71%)

Query: 69  FFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDP 128
           F IA  E+MWLTT EAS + AE+V +RLRV  RSGL WKE E RRQ+ GYNEF V + DP
Sbjct: 33  FIIAEHEKMWLTTKEASAISAEDVVSRLRVGFRSGLSWKECEFRRQITGYNEFSVHQGDP 92

Query: 129 LWRKYIEQVRKSVFLLFF 146
           LW+KYIEQ R  + LL  
Sbjct: 93  LWKKYIEQFRNPLILLLL 110

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012583|ref|XP_003690359.1| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Apis florea]

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 59/73 (80%)

Query: 1   MWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
           MWLTT EA+ +GAEEVAARL VD R+GLWW+EA+ R+QL+G+NEF VKE++P W+KY+EQ
Sbjct: 45  MWLTTAEAASLGAEEVAARLHVDVRTGLWWQEADHRKQLVGFNEFSVKEQEPTWKKYLEQ 104

Query: 61  VRKSVFLLFFIAS 73
            +  + LL   ++
Sbjct: 105 FKNPLILLLLASA 117

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781034|ref|XP_001120297.2| PREDICTED: calcium-transporting ATPase type 2C member 1-like [Apis mellifera]

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 59/73 (80%)

Query: 1   MWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
           MWLTT EA+ +GAEEVAARL VD R+GLWW+EA+ R+QL+G+NEF VKE++P W+KY+EQ
Sbjct: 45  MWLTTAEAASLGAEEVAARLHVDIRTGLWWQEADHRKQLVGFNEFSVKEQEPTWKKYLEQ 104

Query: 61  VRKSVFLLFFIAS 73
            +  + LL   ++
Sbjct: 105 FKNPLILLLLASA 117

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027655|gb|EGI67723.1| Calcium-transporting ATPase type 2C member 1 [Acromyrmex echinatior]

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/71 (64%), Positives = 56/71 (78%)

Query: 76  EMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIE 135
           EMWLTT E++ +GAEEVAARL VD R+GL W+EA+ RRQL G+NEF VKEEDP W+KYIE
Sbjct: 44  EMWLTTAESASLGAEEVAARLHVDVRTGLRWQEADHRRQLTGFNEFTVKEEDPPWKKYIE 103

Query: 136 QVRKSVFLLFF 146
           Q +  + LL  
Sbjct: 104 QFKNPLILLLL 114

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
FB|FBgn0052451	1034	SPoCk "Secretory Pathway Calci	0.408	0.066	0.536	1.6e-13
UNIPROTKB|D6REJ1	102	ATP2C1 "Calcium-transporting A	0.414	0.686	0.408	4.7e-09
UNIPROTKB|D6RGE9	82	ATP2C1 "Calcium-transporting A	0.414	0.853	0.408	4.7e-09
UNIPROTKB|D6RHV9	120	ATP2C1 "Calcium-transporting A	0.414	0.583	0.408	4.7e-09
UNIPROTKB|I3LAD4	161	I3LAD4 "Uncharacterized protei	0.414	0.434	0.408	5.9e-09
ZFIN|ZDB-GENE-060503-615	922	atp2c1 "ATPase, Ca++ transport	0.426	0.078	0.413	2.4e-08
MGI|MGI:1889008	918	Atp2c1 "ATPase, Ca++-sequester	0.414	0.076	0.408	3.8e-08
RGD|621311	919	Atp2c1 "ATPase, Ca++ transport	0.414	0.076	0.408	3.8e-08
UNIPROTKB|Q5R5K5	918	ATP2C1 "Calcium-transporting A	0.414	0.076	0.408	1e-07
UNIPROTKB|P98194	919	ATP2C1 "Calcium-transporting A	0.414	0.076	0.408	1e-07

FB|FBgn0052451 SPoCk "Secretory Pathway Calcium atpase" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 37/69 (53%), Positives = 49/69 (71%)

Query:    76 EMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIE 135
             EM L+T+E+S   A EVA RL+VD R+GL W EA+ R ++IG+NE  +  EDP W+KYIE
Sbjct:   133 EMLLSTSESSTHSASEVAGRLQVDVRTGLKWTEAKYRAKIIGHNELLLVAEDPTWKKYIE 192

Query:   136 QVRKSVFLL 144
             Q R  + LL
Sbjct:   193 QFRNPLILL 201

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0015410 "manganese-transporting ATPase activity" evidence=ISS

GO:0051208 "sequestering of calcium ion" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0042044 "fluid transport" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|D6REJ1 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:    21 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    81 NPLIMLL-LAS 90

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|D6RGE9 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:     5 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 64

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    65 NPLIMLL-LAS 74

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|D6RHV9 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:    21 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    81 NPLIMLL-LAS 90

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|I3LAD4 I3LAD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 29/71 (40%), Positives = 44/71 (61%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+ +AS +   EVA  L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:     5 LTSKKASELPVSEVAGILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 64

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    65 NPLIMLL-LAS 74

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-060503-615 atp2c1 "ATPase, Ca++ transporting, type 2C, member 1" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query:    73 SKEEMW---LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPL 129
             SK+E     LT+ +AS +   EVA  L+ D + GL  +E E RR   G+NEF + E++PL
Sbjct:    16 SKDETMVPVLTSKKASELPVNEVACALQADLQFGLNREEVERRRTYHGWNEFDISEDEPL 75

Query:   130 WRKYIEQVRKSVFLL 144
             W+KY+ Q +  + LL
Sbjct:    76 WKKYLSQFKDPLILL 90

GO:0046872 "metal ion binding" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1889008 Atp2c1 "ATPase, Ca++-sequestering" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+  AS +   EVA  L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:    21 LTSKRASELAVSEVAGLLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    81 NPLIMLL-LAS 90

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005388 "calcium-transporting ATPase activity" evidence=ISO;TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0006828 "manganese ion transport" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0008544 "epidermis development" evidence=ISO

GO:0015410 "manganese-transporting ATPase activity" evidence=ISO

GO:0016020 "membrane" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO

GO:0030133 "transport vesicle" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO

GO:0030145 "manganese ion binding" evidence=ISO

GO:0031532 "actin cytoskeleton reorganization" evidence=ISO

GO:0032468 "Golgi calcium ion homeostasis" evidence=ISO

GO:0032472 "Golgi calcium ion transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070588 "calcium ion transmembrane transport" evidence=TAS

RGD|621311 Atp2c1 "ATPase, Ca++ transporting, type 2C, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+  AS +   EVA  L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:    21 LTSKRASELAVSEVAGLLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    81 NPLIMLL-LAS 90

GO:0000139 "Golgi membrane" evidence=ISO;ISS

GO:0004871 "signal transducer activity" evidence=ISO;ISS

GO:0005388 "calcium-transporting ATPase activity" evidence=ISO;ISS;IDA

GO:0005509 "calcium ion binding" evidence=ISO;ISS

GO:0005524 "ATP binding" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS;IDA

GO:0005802 "trans-Golgi network" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006816 "calcium ion transport" evidence=ISO;ISS;IMP;IDA

GO:0006828 "manganese ion transport" evidence=ISO;ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO;ISS;IMP

GO:0007165 "signal transduction" evidence=ISO;ISS

GO:0008544 "epidermis development" evidence=ISO;ISS

GO:0015410 "manganese-transporting ATPase activity" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISO;ISS

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO;ISS

GO:0030133 "transport vesicle" evidence=IDA

GO:0030141 "secretory granule" evidence=IDA

GO:0030145 "manganese ion binding" evidence=ISO;ISS

GO:0031532 "actin cytoskeleton reorganization" evidence=ISO;ISS

GO:0032468 "Golgi calcium ion homeostasis" evidence=ISO;ISS

GO:0032472 "Golgi calcium ion transport" evidence=IC;ISO;ISS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0070509 "calcium ion import" evidence=IC

UNIPROTKB|Q5R5K5 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Pongo abelii (taxid:9601)]

 Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:    21 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    81 NPLIMLL-LAS 90

GO:0000139 "Golgi membrane" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0006816 "calcium ion transport" evidence=ISS

GO:0006828 "manganese ion transport" evidence=ISS

GO:0006874 "cellular calcium ion homeostasis" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0008544 "epidermis development" evidence=ISS

GO:0015410 "manganese-transporting ATPase activity" evidence=ISS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS

GO:0030026 "cellular manganese ion homeostasis" evidence=ISS

GO:0030145 "manganese ion binding" evidence=ISS

GO:0031532 "actin cytoskeleton reorganization" evidence=ISS

GO:0032468 "Golgi calcium ion homeostasis" evidence=ISS

GO:0032472 "Golgi calcium ion transport" evidence=ISS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISS

UNIPROTKB|P98194 ATP2C1 "Calcium-transporting ATPase type 2C member 1" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/71 (40%), Positives = 45/71 (63%)

Query:     3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
             LT+ +AS +   EVA+ L+ D ++GL   E   RR   G+NEF + E++PLW+KYI Q +
Sbjct:    21 LTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFK 80

Query:    63 KSVFLLFFIAS 73
               + +L  +AS
Sbjct:    81 NPLIMLL-LAS 90

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IDA;IMP

GO:0006816 "calcium ion transport" evidence=IDA;IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=IDA;IMP

GO:0008544 "epidermis development" evidence=IMP

GO:0016021 "integral to membrane" evidence=NAS

GO:0032468 "Golgi calcium ion homeostasis" evidence=IMP

GO:0032472 "Golgi calcium ion transport" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IDA

GO:0006828 "manganese ion transport" evidence=IDA

GO:0015410 "manganese-transporting ATPase activity" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0031532 "actin cytoskeleton reorganization" evidence=IMP

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA;TAS

GO:0034220 "ion transmembrane transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0007165 "signal transduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	169
TIGR01522	884	TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-	1e-10
pfam00690	69	pfam00690, Cation_ATPase_N, Cation transporter/ATP	8e-10
pfam00690	69	pfam00690, Cation_ATPase_N, Cation transporter/ATP	4e-09
TIGR01522	884	TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-	6e-09
smart00831	75	smart00831, Cation_ATPase_N, Cation transporter/AT	2e-05
smart00831	75	smart00831, Cation_ATPase_N, Cation transporter/AT	5e-05
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	0.001
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	0.004

>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 7  EASLMGAEEVAARLRVDCRSGLWWK-EAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSV 65
          +   +  EE  ++L+ D ++GL    EA  RR   G+NEF V+E++ LW+K++ Q  K+ 
Sbjct: 3  QYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNP 62

Query: 66 FLLFFIAS 73
           +L  IAS
Sbjct: 63 LILLLIAS 70

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884

>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 52.2 bits (126), Expect = 8e-10
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 8  ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFL 67
             +  EEV ARL  D   GL   EAE R +  G NE   K+   LW+ ++ Q  K   +
Sbjct: 1  WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQF-KDPLV 59

Query: 68 LFFIAS 73
          +  + +
Sbjct: 60 IILLIA 65

Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. Length = 69

>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 50.2 bits (121), Expect = 4e-09
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 84  ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFL 143
              +  EEV ARL  D   GL   EAE R +  G NE   K+   LW+ ++ Q  K   +
Sbjct: 1   WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQF-KDPLV 59

Query: 144 L 144
           +
Sbjct: 60  I 60

Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. Length = 69

>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 83  EASLMGAEEVAARLRVDCRSGLWWK-EAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSV 141
           +   +  EE  ++L+ D ++GL    EA  RR   G+NEF V+E++ LW+K++ Q  K+ 
Sbjct: 3   QYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNP 62

Query: 142 FLL 144
            +L
Sbjct: 63  LIL 65

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884

>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 11 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 70
          +  EEV  RL+ D   GL  +EA  R +  G NE    ++     +++ Q   +  +   
Sbjct: 7  LSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQF-HNPLIYIL 65

Query: 71 IAS 73
          +A+
Sbjct: 66 LAA 68

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases. Length = 75

>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 15/52 (28%), Positives = 24/52 (46%)

Query: 87  MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 138
           +  EEV  RL+ D   GL  +EA  R +  G NE    ++     +++ Q  
Sbjct: 7   LSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFH 58

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases. Length = 75

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 1  MWLTTNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYI 58
            +T+     +  E  E+   L     +GL  +E + R +  G NE   +++  L +K++
Sbjct: 16 TPVTSETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFL 75

Query: 59 EQVRKSVFLLFFIAS 73
           Q +    +L  +A+
Sbjct: 76 RQFKDPFIILLLVAA 90

Length = 917

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 73  SKEEMWLTTNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLW 130
                 +T+     +  E  E+   L     +GL  +E + R +  G NE   +++  L 
Sbjct: 12  KSSSTPVTSETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLL 71

Query: 131 RKYIEQVRKSVFLLFF 146
           +K++ Q +    +L  
Sbjct: 72  KKFLRQFKDPFIILLL 87

Length = 917

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	99.85
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	99.76
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	99.74
KOG0202|consensus	972		99.57
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.52
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	99.49
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.45
PRK15122	903	magnesium-transporting ATPase; Provisional	99.44
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.4
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.4
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.38
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.28
KOG0202|consensus	972		99.25
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.17
KOG0204|consensus	1034		99.11
PRK15122	903	magnesium-transporting ATPase; Provisional	99.1
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.09
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.05
KOG0203|consensus	1019		99.04
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.02
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	98.99
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	98.99
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	98.99
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	98.8
KOG0205|consensus	942		98.79
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	98.51
KOG0203|consensus	1019		98.38
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	98.31
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	98.28
KOG0204|consensus	1034		98.08
KOG0205|consensus	942		97.97
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	97.66
KOG0208|consensus	1140		87.44
KOG0208|consensus	1140		87.18

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.85  E-value=3.5e-21  Score=125.17  Aligned_cols=69  Identities=29%  Similarity=0.448  Sum_probs=66.4

Q ss_pred             hhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHH
Q psy15153         84 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFS  152 (169)
Q Consensus        84 ~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis  152 (169)
                      ||.++++++++.++++..+|||++||++|+++||+|++++++++++|++|+++|.|||+++|+++|+||
T Consensus         1 w~~~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS   69 (69)
T PF00690_consen    1 WHQLSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS   69 (69)
T ss_dssp             -TTSSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence            688999999999998889999999999999999999999999999999999999999999999999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=99.76  E-value=2.4e-18  Score=110.00  Aligned_cols=62  Identities=21%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             HhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153         95 RLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS  156 (169)
Q Consensus        95 ~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~  156 (169)
                      .++++.+.|||++||++|+++||+|++++++++++|++|+++|.|||+++|+++|++|+++|
T Consensus         2 ~l~~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~   63 (64)
T smart00831        2 RLQTSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG   63 (64)
T ss_pred             CCCCCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            36778777999999999999999999999998999999999999999999999999999986

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.74  E-value=6.1e-18  Score=109.83  Aligned_cols=67  Identities=31%  Similarity=0.492  Sum_probs=63.8

Q ss_pred             hhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153          8 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK   74 (169)
Q Consensus         8 ~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~   74 (169)
                      ||+.+++++++.++++..+|||++||++|+++||+|+++..+++++|++|+++|.||++++|++++.
T Consensus         1 w~~~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aai   67 (69)
T PF00690_consen    1 WHQLSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAI   67 (69)
T ss_dssp             -TTSSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHH
Confidence            7899999999999988899999999999999999999999999999999999999999999998875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

>KOG0202|consensus

Probab=99.57  E-value=6.3e-15  Score=131.32  Aligned_cols=81  Identities=27%  Similarity=0.338  Sum_probs=75.7

Q ss_pred             HhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCCC
Q psy15153         83 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPG  162 (169)
Q Consensus        83 ~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~~  162 (169)
                      +.|..+++|++..|++|.++|||++||..|++.||+|+++.++.+++|+++++||.|+++++|+++|+|||+++.+-+|.
T Consensus         3 ~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~   82 (972)
T KOG0202|consen    3 EAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPF   82 (972)
T ss_pred             chhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccce
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999998876664


Q ss_pred             C
Q psy15153        163 A  163 (169)
Q Consensus       163 ~  163 (169)
                      .
T Consensus        83 v   83 (972)
T KOG0202|consen   83 V   83 (972)
T ss_pred             e
Confidence            3

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.52  E-value=2.6e-14  Score=133.50  Aligned_cols=80  Identities=18%  Similarity=0.094  Sum_probs=75.0

Q ss_pred             HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCC
Q psy15153         82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPP  161 (169)
Q Consensus        82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~  161 (169)
                      .+||.++++++++.++++..+|||++||++|+++||+|++++++++++|++|++||.||++++|++++++|++++.+.++
T Consensus         5 ~~~~~~~~~~v~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~~   84 (1053)
T TIGR01523         5 NAYFSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIEG   84 (1053)
T ss_pred             CchhhCCHHHHHHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHHH
Confidence            57899999999999999877899999999999999999999999999999999999999999999999999998876543

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=99.49  E-value=1e-13  Score=88.44  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             HhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153         19 RLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKE   75 (169)
Q Consensus        19 ~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~   75 (169)
                      .+++|...|||++||++|+++||+|+++.++++++|++++++|.||++++|++++..
T Consensus         2 ~l~~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~i   58 (64)
T smart00831        2 RLQTSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVL   58 (64)
T ss_pred             CCCCCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            467787679999999999999999999999999999999999999999999987753

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.45  E-value=2e-13  Score=125.87  Aligned_cols=80  Identities=29%  Similarity=0.488  Sum_probs=74.5

Q ss_pred             HHhhhcCHHHHHHHhCCCcCCCCC-HHHHHHHHHhhcCCcccCCCCChHHHHHHHHH-hhHHHHHHHHHHHHHHHhhccc
Q psy15153         82 NEASLMGAEEVAARLRVDCRSGLW-WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQV-RKSVFLLFFYCFPFSTKFSVRF  159 (169)
Q Consensus        82 ~~~~~~~~~ev~~~l~~~~~~GLs-~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~-~~~~~liL~~aaiis~~~~~~~  159 (169)
                      .+||.++++++++.++++..+||| ++||++|+++||+|+++.++++++|+.|++|| .||++++|++++++|+++|.+.
T Consensus         2 ~~~~~~~~~~v~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~   81 (884)
T TIGR01522         2 KQYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNID   81 (884)
T ss_pred             cchhhCCHHHHHHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchh
Confidence            468999999999999999888999 99999999999999999999999999999999 8999999999999999998765


Q ss_pred             CC
Q psy15153        160 PP  161 (169)
Q Consensus       160 ~~  161 (169)
                      ++
T Consensus        82 ~~   83 (884)
T TIGR01522        82 DA   83 (884)
T ss_pred             hH
Confidence            53

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.44  E-value=3.7e-13  Score=124.26  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=72.9

Q ss_pred             hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153         81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP  160 (169)
Q Consensus        81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~  160 (169)
                      ....|..+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|++||.||++++|++++++|++++.+.+
T Consensus        24 ~~~~~~~~~~~v~~~l~~~~-~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~  102 (903)
T PRK15122         24 IAREAANSLEETLANLNTHR-QGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLP  102 (903)
T ss_pred             HHHHHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            35578889999999999984 79999999999999999999999999999999999999999999999999999986653

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.40  E-value=8.4e-13  Score=121.86  Aligned_cols=80  Identities=23%  Similarity=0.183  Sum_probs=73.2

Q ss_pred             hhHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Q psy15153         80 TTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRF  159 (169)
Q Consensus        80 ~~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~  159 (169)
                      .....+..+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|+++|.||++++|++++++|++++.+.
T Consensus        45 ~~~~~~~~~~~~v~~~l~~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~  123 (902)
T PRK10517         45 RCLKAAVMPEEELWKTFDTHP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLF  123 (902)
T ss_pred             HHHHHHcCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHH
Confidence            345677889999999999986 7999999999999999999999999999999999999999999999999999987654


Q ss_pred             C
Q psy15153        160 P  160 (169)
Q Consensus       160 ~  160 (169)
                      +
T Consensus       124 ~  124 (902)
T PRK10517        124 A  124 (902)
T ss_pred             H
Confidence            3

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.40  E-value=7.9e-13  Score=123.25  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153         82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS  156 (169)
Q Consensus        82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~  156 (169)
                      .++|..+.+++++.++++..+|||++||++|+++||+|++++++++++|++|+++|.+|++++|++++++|+++.
T Consensus        15 ~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~   89 (997)
T TIGR01106        15 MDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAY   89 (997)
T ss_pred             CCchhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            368999999999999999888999999999999999999999999999999999999999999999999988764

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.38  E-value=1.1e-12  Score=120.67  Aligned_cols=80  Identities=20%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153         81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP  160 (169)
Q Consensus        81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~  160 (169)
                      ....|.++.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|+++|.+|++++|++++++|++++.+.+
T Consensus        12 ~~~~~~~~~~~~~~~l~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~   90 (867)
T TIGR01524        12 LLKESQMGKETLLRKLGVHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEA   90 (867)
T ss_pred             HHHHHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence            45677889999999999985 79999999999999999999999888999999999999999999999999999887654


Q ss_pred             C
Q psy15153        161 P  161 (169)
Q Consensus       161 ~  161 (169)
                      +
T Consensus        91 ~   91 (867)
T TIGR01524        91 T   91 (867)
T ss_pred             H
Confidence            3

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.28  E-value=1.1e-11  Score=115.14  Aligned_cols=71  Identities=21%  Similarity=0.284  Sum_probs=67.5

Q ss_pred             CHHHHHHHhCCCcCCCCC--HHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153         88 GAEEVAARLRVDCRSGLW--WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR  158 (169)
Q Consensus        88 ~~~ev~~~l~~~~~~GLs--~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~  158 (169)
                      +.+++++.++++.++|||  ++||++|+++||+|++++++++++|+.|++||++|++++|++++++|++++..
T Consensus        43 ~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~  115 (941)
T TIGR01517        43 GAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLP  115 (941)
T ss_pred             CHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhc
Confidence            789999999999888999  99999999999999999999999999999999999999999999999998854

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>KOG0202|consensus

Probab=99.25  E-value=1.9e-11  Score=109.49  Aligned_cols=69  Identities=29%  Similarity=0.462  Sum_probs=65.3

Q ss_pred             HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153          6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK   74 (169)
Q Consensus         6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~   74 (169)
                      .++|..+++|++..|++|...|||++|+..|++.||.|+++.++.++.|+.+++||.|+++++|++++.
T Consensus         2 ~~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~   70 (972)
T KOG0202|consen    2 EEAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAA   70 (972)
T ss_pred             cchhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999998854

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.17  E-value=7.5e-11  Score=110.49  Aligned_cols=69  Identities=22%  Similarity=0.162  Sum_probs=64.5

Q ss_pred             cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      ..+||.++++++++.++++...|||++||++|+++||+|+++.++++++|++|++||.||++++|++++
T Consensus         4 ~~~~~~~~~~~v~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aa   72 (1053)
T TIGR01523         4 FNAYFSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAA   72 (1053)
T ss_pred             CCchhhCCHHHHHHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHH
Confidence            357899999999999999977899999999999999999999999999999999999999999888764

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>KOG0204|consensus

Probab=99.11  E-value=2.2e-10  Score=102.88  Aligned_cols=75  Identities=21%  Similarity=0.308  Sum_probs=71.4

Q ss_pred             CHHHHHHHhCCCcCCCCCH--HHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCCC
Q psy15153         88 GAEEVAARLRVDCRSGLWW--KEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPG  162 (169)
Q Consensus        88 ~~~ev~~~l~~~~~~GLs~--~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~~  162 (169)
                      .+++++++|++|+..||+.  ++...|++-||.|.+++++++++|+..|+++.|...+||.+||++|+.+|++.++.
T Consensus       102 Gv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~  178 (1034)
T KOG0204|consen  102 GVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGI  178 (1034)
T ss_pred             CHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCC
Confidence            6899999999999999988  88899999999999999999999999999999999999999999999999988753

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.10  E-value=2.9e-10  Score=105.27  Aligned_cols=69  Identities=19%  Similarity=0.222  Sum_probs=64.0

Q ss_pred             cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153          5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK   74 (169)
Q Consensus         5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~   74 (169)
                      +...|..+.+++++.++++ .+|||++||++|+++||+|+++.++++++|+.|++||+||++++|++++.
T Consensus        24 ~~~~~~~~~~~v~~~l~~~-~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~   92 (903)
T PRK15122         24 IAREAANSLEETLANLNTH-RQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAA   92 (903)
T ss_pred             HHHHHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence            4678999999999999999 58999999999999999999999999999999999999999998887754

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.09  E-value=2.8e-10  Score=105.26  Aligned_cols=68  Identities=32%  Similarity=0.647  Sum_probs=63.4

Q ss_pred             HHhhcCCHHHHHHHhCCCCCCCCC-HHHHHHHHHHhCCCCCCccCCchHHHHHHHHH-hhHHHHHHHHHH
Q psy15153          6 NEASLMGAEEVAARLRVDCRSGLW-WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQV-RKSVFLLFFIAS   73 (169)
Q Consensus         6 ~~~~~~~~~e~~~~l~~~~~~GLs-~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf-~~p~~llL~~~~   73 (169)
                      ++||.++++++++.+++|..+||| ++||++|+++||+|+++.++++++|+.|++|| .||+.++|++++
T Consensus         2 ~~~~~~~~~~v~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa   71 (884)
T TIGR01522         2 KQYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASA   71 (884)
T ss_pred             cchhhCCHHHHHHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHH
Confidence            578999999999999999888999 99999999999999999999999999999999 999999887653

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.05  E-value=4.1e-10  Score=105.27  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153          6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK   74 (169)
Q Consensus         6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~   74 (169)
                      .++|..+.+++++.++++...|||++||++|+++||+|+++.++++++|++|+++|.+|++++|++++.
T Consensus        15 ~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~   83 (997)
T TIGR01106        15 MDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAI   83 (997)
T ss_pred             CCchhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHH
Confidence            368999999999999999888999999999999999999999999999999999999999988876643

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>KOG0203|consensus

Probab=99.04  E-value=6e-10  Score=100.01  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             HhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153         83 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP  160 (169)
Q Consensus        83 ~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~  160 (169)
                      +.|.++.+|++++++++..+|||.++|.+++++.|+|.+++++..+.|.+|++|+++-+.++++++|++|++.-.+.+
T Consensus        38 ~~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~  115 (1019)
T KOG0203|consen   38 DDHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQA  115 (1019)
T ss_pred             ccccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Confidence            468999999999999999999999999999999999999999999999999999999999999999999987644333

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.02  E-value=1e-09  Score=101.58  Aligned_cols=67  Identities=25%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      .+.++.+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|++||.||++++|++++
T Consensus        47 ~~~~~~~~~~v~~~l~~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa  113 (902)
T PRK10517         47 LKAAVMPEEELWKTFDTHP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILG  113 (902)
T ss_pred             HHHHcCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHH
Confidence            4568889999999999985 799999999999999999999999999999999999999999887663

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=98.99  E-value=1.5e-09  Score=100.15  Aligned_cols=68  Identities=22%  Similarity=0.218  Sum_probs=62.3

Q ss_pred             cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      +.+.|+.+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.++++|.||++++|++++
T Consensus        12 ~~~~~~~~~~~~~~~l~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a   79 (867)
T TIGR01524        12 LLKESQMGKETLLRKLGVHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLM   79 (867)
T ss_pred             HHHHHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHH
Confidence            45778999999999999984 799999999999999999999999999999999999999998887664

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=98.99  E-value=6.8e-10  Score=101.15  Aligned_cols=58  Identities=17%  Similarity=0.039  Sum_probs=52.8

Q ss_pred             CCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCC
Q psy15153        103 GLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPP  161 (169)
Q Consensus       103 GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~  161 (169)
                      |||++||++|+++||+|+++++ +++.|++|+++|.+|++++|++++++|+++|.+.++
T Consensus         1 GLs~~ea~~r~~~~G~N~~~~~-~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~   58 (755)
T TIGR01647         1 GLTSAEAKKRLAKYGPNELPEK-KVSPLLKFLGFFWNPLSWVMEAAAIIAIALENWVDF   58 (755)
T ss_pred             CcCHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhhcchhhh
Confidence            8999999999999999999974 456789999999999999999999999999876553

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.99  E-value=1e-09  Score=101.80  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=73.7

Q ss_pred             hHHhhhcCHH--HHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153         81 TNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR  158 (169)
Q Consensus        81 ~~~~~~~~~~--ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~  158 (169)
                      ...++..+.+  ++...+.++...|||++|+.+|+++||+|++++.++.++|.+|+.||.+|++++|++++++|++++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~   99 (917)
T COG0474          20 SETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDW   99 (917)
T ss_pred             cccccccccchhhHHHhhcCCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4466777777  99999988888999999999999999999999999999999999999999999999999999999987


Q ss_pred             cC
Q psy15153        159 FP  160 (169)
Q Consensus       159 ~~  160 (169)
                      .+
T Consensus       100 ~~  101 (917)
T COG0474         100 VD  101 (917)
T ss_pred             cc
Confidence            65

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=98.80  E-value=1.3e-08  Score=94.84  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=57.5

Q ss_pred             CHHHHHHHhCCCCCCCCC--HHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153         12 GAEEVAARLRVDCRSGLW--WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus        12 ~~~e~~~~l~~~~~~GLs--~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      +++++++.+++|...|||  ++||++|+++||+|+++.++++++|+.+++||++|++++|++++
T Consensus        43 ~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~a  106 (941)
T TIGR01517        43 GAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAA  106 (941)
T ss_pred             CHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHH
Confidence            688999999999888999  99999999999999999999999999999999999988777654

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>KOG0205|consensus

Probab=98.79  E-value=1.1e-08  Score=90.09  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=67.3

Q ss_pred             hhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh--cccC-
Q psy15153         84 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS--VRFP-  160 (169)
Q Consensus        84 ~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~--~~~~-  160 (169)
                      ....+++||.++|..+. .|||.+|+++|++.||+|++.++ +++.+.+|+..|.||+.++.-+||++++.+.  --.| 
T Consensus        18 l~~~p~eeVfeeL~~t~-~GLt~~E~~eRlk~fG~NkleEk-ken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~   95 (942)
T KOG0205|consen   18 LEAIPIEEVFEELLCTR-EGLTSDEVEERLKIFGPNKLEEK-KESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPP   95 (942)
T ss_pred             cccCchhhhHHHHhcCC-CCCchHHHHHHHHhhCchhhhhh-hhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCc
Confidence            45668999999998754 59999999999999999999954 5678999999999999999999999988774  2222 


Q ss_pred             CCCccc
Q psy15153        161 PGADFI  166 (169)
Q Consensus       161 ~~~~~~  166 (169)
                      .+.+|+
T Consensus        96 DW~DF~  101 (942)
T KOG0205|consen   96 DWQDFV  101 (942)
T ss_pred             chhhhh
Confidence            455553

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.51  E-value=2.5e-07  Score=86.13  Aligned_cols=73  Identities=22%  Similarity=0.300  Sum_probs=66.0

Q ss_pred             CCCcHHhhcCCHH--HHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153          2 WLTTNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK   74 (169)
Q Consensus         2 ~~~~~~~~~~~~~--e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~   74 (169)
                      +.....||..+.+  ++...+.++...|||.+|+.+|+++||+|+++..+..++|..|+.||.+|+..+|+.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~   91 (917)
T COG0474          17 PVTSETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAAL   91 (917)
T ss_pred             cCCcccccccccchhhHHHhhcCCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556678888888  999999998889999999999999999999999999999999999999999998887743

>KOG0203|consensus

Probab=98.38  E-value=7.2e-07  Score=80.68  Aligned_cols=67  Identities=21%  Similarity=0.352  Sum_probs=63.1

Q ss_pred             HhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          7 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         7 ~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      +.|.++.+|+.+++++|..+|||.++|.+++.+.|+|.+++++..+.|.+|++|+.+-+.++++.++
T Consensus        38 ~~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a  104 (1019)
T KOG0203|consen   38 DDHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGA  104 (1019)
T ss_pred             ccccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999999999999999988887664

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=98.31  E-value=1e-06  Score=83.20  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             CCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153        101 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS  156 (169)
Q Consensus       101 ~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~  156 (169)
                      ..|||++||++|+++||+|+++.+ .+++|+.|++++.+||.+++++++++.++-+
T Consensus       137 ~~GLs~~e~~~r~~~yG~N~i~~~-~~s~~~ll~~~~~~p~~i~~i~~~~l~~~~~  191 (1054)
T TIGR01657       137 SNGLTTGDIAQRKAKYGKNEIEIP-VPSFLELLKEEVLHPFYVFQVFSVILWLLDE  191 (1054)
T ss_pred             ccCCCHHHHHHHHHhcCCCeeecC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhhh
Confidence            469999999999999999999975 5799999999999999999998877765443

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=98.28  E-value=1.3e-06  Score=79.93  Aligned_cols=46  Identities=22%  Similarity=0.136  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153         27 GLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus        27 GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      |||++||++|+++||+|+++. ++++.|..|+++|.+|+.++|++++
T Consensus         1 GLs~~ea~~r~~~~G~N~~~~-~~~~~~~~~~~~~~~~~~~lL~~aa   46 (755)
T TIGR01647         1 GLTSAEAKKRLAKYGPNELPE-KKVSPLLKFLGFFWNPLSWVMEAAA   46 (755)
T ss_pred             CcCHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhchHHHHHHHHH
Confidence            899999999999999999997 4556789999999999988887664

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>KOG0204|consensus

Probab=98.08  E-value=9.7e-06  Score=73.68  Aligned_cols=66  Identities=23%  Similarity=0.389  Sum_probs=60.2

Q ss_pred             CHHHHHHHhCCCCCCCCCH--HHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy15153         12 GAEEVAARLRVDCRSGLWW--KEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEM   77 (169)
Q Consensus        12 ~~~e~~~~l~~~~~~GLs~--~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~~   77 (169)
                      .++.+++.|.+|+..|++.  +|...|++.||.|.+|+++++++|+..++++.|...++|..++....
T Consensus       102 Gv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl  169 (1034)
T KOG0204|consen  102 GVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSL  169 (1034)
T ss_pred             CHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHH
Confidence            5889999999999999996  77889999999999999999999999999999999999988876543

>KOG0205|consensus

Probab=97.97  E-value=1.6e-05  Score=70.67  Aligned_cols=67  Identities=21%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             hcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy15153          9 SLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEM   77 (169)
Q Consensus         9 ~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~~   77 (169)
                      ...+.+++.+.|.++. .|||++|+++|++.||+|+++++ +.+.+.+|+.-|.||...+.-+|+....
T Consensus        19 ~~~p~eeVfeeL~~t~-~GLt~~E~~eRlk~fG~NkleEk-ken~~lKFl~Fm~~PlswVMEaAAimA~   85 (942)
T KOG0205|consen   19 EAIPIEEVFEELLCTR-EGLTSDEVEERLKIFGPNKLEEK-KESKFLKFLGFMWNPLSWVMEAAAIMAI   85 (942)
T ss_pred             ccCchhhhHHHHhcCC-CCCchHHHHHHHHhhCchhhhhh-hhhHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            4557889999998874 59999999999999999999955 5678899999999999887777665433

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=97.66  E-value=6.5e-05  Score=71.16  Aligned_cols=47  Identities=17%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHH
Q psy15153         25 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIA   72 (169)
Q Consensus        25 ~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~   72 (169)
                      ..|||++|+++|++.||+|+++.+ .+++|+.+++++.+|+.++++++
T Consensus       137 ~~GLs~~e~~~r~~~yG~N~i~~~-~~s~~~ll~~~~~~p~~i~~i~~  183 (1054)
T TIGR01657       137 SNGLTTGDIAQRKAKYGKNEIEIP-VPSFLELLKEEVLHPFYVFQVFS  183 (1054)
T ss_pred             ccCCCHHHHHHHHHhcCCCeeecC-CCCHHHHHHHHHhchHHHHHHHH
Confidence            369999999999999999999885 57999999999999998877655

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>KOG0208|consensus

Probab=87.44  E-value=0.91  Score=42.97  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHH
Q psy15153        101 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFL  143 (169)
Q Consensus       101 ~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~l  143 (169)
                      ..||+.+++..|+.-||+|.+.-+. ++.+..++++..+||-+
T Consensus       158 ~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfYl  199 (1140)
T KOG0208|consen  158 SNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFYL  199 (1140)
T ss_pred             cCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHHH
Confidence            4799999999999999999999664 67899999988888653

>KOG0208|consensus

Probab=87.18  E-value=0.82  Score=43.24  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             CCCcHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHH
Q psy15153          2 WLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVF   66 (169)
Q Consensus         2 ~~~~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~   66 (169)
                      |.+..+.........+...... ..||+.+++..|+.-||+|.+.-.. ++.+.+++++.-+|+-
T Consensus       136 w~~~~~~~~~~~~~~~~~~~~~-~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfY  198 (1140)
T KOG0208|consen  136 WPPFQKAEFRDDPRWYSTESYV-SNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFY  198 (1140)
T ss_pred             eccccchhhccchhhhccceec-cCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHH
Confidence            3333333334445555555555 5799999999999999999998764 5789999999888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	2e-08
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	2e-08
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	3e-06
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	3e-06
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	7e-06
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	9e-06
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	3e-04

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 11 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
             EE  A   V   +GL   + +   +  G+NE   +E   LW   IEQ
Sbjct: 8  KSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQ 57

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 87  MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 136
              EE  A   V   +GL   + +   +  G+NE   +E   LW   IEQ
Sbjct: 8   KSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQ 57

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 11  MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 70
           +  +E+  +   D   GL    A+      G N        P W K+  Q+    F +  
Sbjct: 51  LSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQL-FGGFSILL 109

Query: 71  IAS 73
              
Sbjct: 110 WIG 112

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 87  MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 144
           +  +E+  +   D   GL    A+      G N        P W K+  Q+    F +
Sbjct: 51  LSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQL-FGGFSI 107

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 11  MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 70
           +   E+  + +     GL    A       G N        P + K+  Q+         
Sbjct: 56  LSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQL-AGGLQCLM 114

Query: 71  IAS 73
             +
Sbjct: 115 WVA 117

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 87  MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 144
           +   E+  + +     GL    A       G N        P + K+  Q+       
Sbjct: 56  LSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQL-AGGLQC 112

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 72  ASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWR 131
           +S E++   T +   +  EEV  +L+   R GL  +E E R Q+ G N+   ++++    
Sbjct: 2   SSLEDIKNETVDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKL-EEKKESKLL 59

Query: 132 KYIEQ 136
           K++  
Sbjct: 60  KFLGF 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.45
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.42
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.39
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.13
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.1
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.07
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.01
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	98.92
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	98.52
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	98.28

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.45  E-value=1.5e-13  Score=127.23  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=71.0

Q ss_pred             HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153         82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS  156 (169)
Q Consensus        82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~  156 (169)
                      .+||.++++|++++|+++..+|||++||++|+++||+|++++++++++|++|++||.+|++++|++++++|++++
T Consensus        51 ~~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~  125 (1034)
T 3ixz_A           51 INDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAF  125 (1034)
T ss_pred             cchhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            368999999999999999888999999999999999999999999999999999999999999999999998765

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.42  E-value=2.8e-13  Score=124.98  Aligned_cols=78  Identities=22%  Similarity=0.211  Sum_probs=73.3

Q ss_pred             hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153         81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR  158 (169)
Q Consensus        81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~  158 (169)
                      +.+||.++++++++.++++..+|||++||++|+++||+|+++.++++++|+.|++||.+|++++|++++++|+++++.
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~   79 (995)
T 3ar4_A            2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWF   79 (995)
T ss_dssp             CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTS
T ss_pred             cchhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457899999999999999887899999999999999999999988899999999999999999999999999998754

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.39  E-value=3.5e-13  Score=124.70  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy15153         82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSV  157 (169)
Q Consensus        82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~  157 (169)
                      .+||.++++++++.++++..+|||++||++|+++||+|++++++++++|++|++||.+||+++|++++++|++++.
T Consensus        46 ~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~  121 (1028)
T 2zxe_A           46 MDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYG  121 (1028)
T ss_dssp             CCCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHH
T ss_pred             cchhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999987789999999999999999999999899999999999999999999999999988753

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.13  E-value=8.6e-11  Score=108.84  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      .+||.++.+++++.++++..+|||++||++|+++||+|++++++++++|++|++||.+|++++|++++
T Consensus        51 ~~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa  118 (1034)
T 3ixz_A           51 INDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAA  118 (1034)
T ss_pred             cchhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHH
Confidence            36899999999999999987899999999999999999999999999999999999999988887654

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.10  E-value=1e-10  Score=108.00  Aligned_cols=69  Identities=25%  Similarity=0.309  Sum_probs=64.1

Q ss_pred             cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      |.+||.++++++++.+++|..+|||++||++|+++||+|+++..+++++|+.+++||.+|++++|++++
T Consensus         2 ~~~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a   70 (995)
T 3ar4_A            2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAA   70 (995)
T ss_dssp             CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHH
T ss_pred             cchhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999977899999999999999999999999999999999999999988777654

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.07  E-value=1.8e-12  Score=118.33  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153         82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS  156 (169)
Q Consensus        82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~  156 (169)
                      .++|.++.+|+++.++++ .+|||++||++|+++||+|+++.++ +++|++|++||.||++++|++++++|++++
T Consensus        12 ~~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis~~l~   84 (885)
T 3b8c_A           12 VDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALA   84 (885)
T ss_dssp             CCCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGGGGSS
T ss_pred             hhhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367889999999999997 5899999999999999999998776 678899999999999999999999999987

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.01  E-value=2.5e-10  Score=105.68  Aligned_cols=68  Identities=19%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             HhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153          7 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK   74 (169)
Q Consensus         7 ~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~   74 (169)
                      +||.++++++++.++++..+|||++||++|+++||+|+++.++++++|++|++||.+|++++|++++.
T Consensus        47 ~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~  114 (1028)
T 2zxe_A           47 DDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAI  114 (1028)
T ss_dssp             CCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHH
T ss_pred             chhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence            57999999999999999778999999999999999999999999999999999999999988887643

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=98.92  E-value=4.8e-10  Score=102.65  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=58.0

Q ss_pred             HHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Q psy15153         93 AARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRF  159 (169)
Q Consensus        93 ~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~  159 (169)
                      .+.++++..+|||++||++|+++||+|++++++ .++|.+|+.||.+|+.++|++++++++++|.+.
T Consensus        77 ~~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~g~~~  142 (920)
T 1mhs_A           77 EDMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWV  142 (920)
T ss_dssp             STTTTTCCCCCCCSHHHHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTCSCSS
T ss_pred             HHHhCCCcCCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            345788777899999999999999999999654 678999999999999999999999998887654

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=98.52  E-value=1.6e-09  Score=98.89  Aligned_cols=66  Identities=24%  Similarity=0.293  Sum_probs=58.7

Q ss_pred             HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153          6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus         6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      .++|.++.+++++.++++ .+|||++||++|+++||+|+++.++ ++.|+.|++||.||++++|++++
T Consensus        12 ~~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aa   77 (885)
T 3b8c_A           12 VDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAA   77 (885)
T ss_dssp             CCCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHH
T ss_pred             hhhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999998 6899999999999999999998776 77899999999999987776654

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=98.28  E-value=5.6e-07  Score=82.49  Aligned_cols=55  Identities=22%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             HHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153         18 ARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS   73 (169)
Q Consensus        18 ~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~   73 (169)
                      +.++++...|||++||++|+++||+|+++.. ++++|..|+.||.+|+.++|.+++
T Consensus        78 ~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~-~~~~~~~~l~~f~~~~~~ll~~aa  132 (920)
T 1mhs_A           78 DMLQTDTRVGLTSEEVVQRRRKYGLNQMKEE-KENHFLKFLGFFVGPIQFVMEGAA  132 (920)
T ss_dssp             TTTTTCCCCCCCSHHHHHHHHHTSSSSCCCC-CCSSHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcCCCCCHHHHHHHHHhcCCCccCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4578876789999999999999999999865 477899999999999987776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1wpga4	472	f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP	6e-09
d1wpga4	472	f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP	5e-08

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 51.6 bits (123), Expect = 6e-09
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 7  EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVF 66
           A     EE  A   V   +GL   + +   +  G+NE   +E   LW   IEQ    + 
Sbjct: 3  AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLV 62

Query: 67 LLFFIAS 73
           +  +A+
Sbjct: 63 RILLLAA 69

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 83  EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 138
            A     EE  A   V   +GL   + +   +  G+NE   +E   LW   IEQ  
Sbjct: 3   AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFE 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	99.73
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	99.52

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.73  E-value=3.1e-18  Score=144.53  Aligned_cols=80  Identities=21%  Similarity=0.188  Sum_probs=76.4

Q ss_pred             hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153         81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP  160 (169)
Q Consensus        81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~  160 (169)
                      |+++|+.+++|++++|++|+++|||++||++|+++||+|++++++++++|+.|++||+||++++|+++|++|+++|...+
T Consensus         1 m~~~h~~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~   80 (472)
T d1wpga4           1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE   80 (472)
T ss_dssp             CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSC
T ss_pred             CcChhhCCHHHHHHHhCcCcccCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999999999899999999999999999999999999999999999999999999999999999998655

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.52  E-value=8.3e-15  Score=123.26  Aligned_cols=72  Identities=24%  Similarity=0.272  Sum_probs=67.9

Q ss_pred             cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHH
Q psy15153          5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEE   76 (169)
Q Consensus         5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~   76 (169)
                      |+++|+.+++|+++.|++|.++|||++||++|+++||+|++++++++|+|+.+++||+||++++|++++...
T Consensus         1 m~~~h~~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls   72 (472)
T d1wpga4           1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACIS   72 (472)
T ss_dssp             CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred             CcChhhCCHHHHHHHhCcCcccCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            678999999999999999998999999999999999999999999999999999999999999999876543