Psyllid ID: psy15212
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | 2.2.26 [Sep-21-2011] | |||||||
| P44788 | 451 | Ribosomal RNA small subun | yes | N/A | 0.927 | 0.676 | 0.391 | 2e-60 | |
| Q87KD3 | 427 | Ribosomal RNA small subun | yes | N/A | 0.930 | 0.716 | 0.363 | 3e-58 | |
| A1JRZ3 | 429 | Ribosomal RNA small subun | yes | N/A | 0.924 | 0.708 | 0.360 | 1e-57 | |
| Q9KVU5 | 434 | Ribosomal RNA small subun | yes | N/A | 0.927 | 0.702 | 0.352 | 1e-56 | |
| B5XNC2 | 431 | Ribosomal RNA small subun | yes | N/A | 0.924 | 0.705 | 0.357 | 3e-56 | |
| A6TEU2 | 431 | Ribosomal RNA small subun | yes | N/A | 0.920 | 0.703 | 0.359 | 3e-56 | |
| A8GKG7 | 429 | Ribosomal RNA small subun | yes | N/A | 0.911 | 0.699 | 0.345 | 1e-55 | |
| A7MPE7 | 429 | Ribosomal RNA small subun | yes | N/A | 0.902 | 0.692 | 0.351 | 1e-55 | |
| Q9CKP7 | 446 | Ribosomal RNA small subun | yes | N/A | 0.917 | 0.677 | 0.369 | 2e-55 | |
| A9R925 | 429 | Ribosomal RNA small subun | yes | N/A | 0.908 | 0.696 | 0.356 | 5e-55 |
| >sp|P44788|RSMB_HAEIN Ribosomal RNA small subunit methyltransferase B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsmB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 201/340 (59%), Gaps = 35/340 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++NA+LR FLR++ EI I + W +P W++N++K YPN W+ I++ ++
Sbjct: 132 LVNAVLRRFLREQDEILA-----IIDKNWQTLHPEWFVNKLKKAYPN---WREIIEANNQ 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+N +K L +Y LL++ G+ + T P A+ L PI++ K+P F G ++Q
Sbjct: 184 KPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQ 243
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D +AQ AA LL+ ++ ++LDAC+APGGKT H+LE+A +I++D RL + ENL+
Sbjct: 244 DLSAQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLE 303
Query: 177 RLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP 236
RLN +A ++ D SK + + +I K FDRIL D PC+ +GV+RR+P
Sbjct: 304 RLNQQAIVVCGDASKPD--EWLAEIGKSAAK---------FDRILLDAPCSATGVIRRHP 352
Query: 237 DIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296
DI WLR++ DI +L + KIL+ LW+ LKP G LL+ TCS+ EE+ EQ F H D
Sbjct: 353 DIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHAD 412
Query: 297 SIRLNSP---------GQLLPTVNKKQDYDGFFYSLFQKR 327
+ L+ P Q +P N DGF+Y+ KR
Sbjct: 413 AELLSLPFSDDKSAVGFQFIPQPNSG---DGFYYAKLLKR 449
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 6 |
| >sp|Q87KD3|RSMB_VIBPA Ribosomal RNA small subunit methyltransferase B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 196/336 (58%), Gaps = 30/336 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E+ + + N + + +P W + ++ YP QW++I+D ++K
Sbjct: 113 LINAVLRNYQRNQEELDQMAVSN-NAGKYGHPSWLLKLLQDAYPQ--QWESIVDANNQKA 169
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETT--IIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LLK +++T AIKL P + K+P F G+ S+QD
Sbjct: 170 PMWLRVNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQD 229
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQL+ L + G +LD C+APGGKT H+LE + +++++D + +RL + ENLKR
Sbjct: 230 AAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKR 289
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
LNL+A ++ D N +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 290 LNLQAKVVCGD----------------ARNPQEWWQGEQFDRILLDAPCSATGVIRRHPD 333
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +I + +W LKPGG +++ TCS+ +E+ EQ F D+
Sbjct: 334 IKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADA 393
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKRK 328
L+S PG Q+LP ++D DGF+Y++ K +
Sbjct: 394 QLLDSDPDQPGRQILPG---EEDMDGFYYAVLTKTR 426
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Vibrio parahaemolyticus (taxid: 670) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 202/336 (60%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S++ +P W + ++K+ YP+ QW+ ILD ++KP
Sbjct: 117 LINGVLRQFQRQQVELLERAANN--DSHYLHPSWLLARIKLAYPD--QWQQILDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + I Y +LLK++ +E P A++L TP ++S +P F G+ ++QD
Sbjct: 173 PMWLRVNRLHHSRIEYLELLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A + +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A + + D +T + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LRLHADVRVGD--------------GRTPDEW--CGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI +L++ +I+ +W LK GG +++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA 396
Query: 298 IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
+ + Q LP +D DGF+Y+ KR
Sbjct: 397 DLVETGTVSALGRQNLP---HPEDGDGFYYAKLIKR 429
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 194/335 (57%), Gaps = 30/335 (8%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+INA+LR + R + E ++ + + +P W + +K +YP QW+ I++ + K
Sbjct: 121 LINAVLRNYQRDQ-EGLDAQATSHDAGRYGHPGWLLKLLKESYPE--QWQQIVEANNSKA 177
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N + T Y LL+++G+ TT A+ L TP + ++P F G+ S+QD
Sbjct: 178 PMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD 237
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADIKLISVDNNLSRLNMISENLKR 177
AAAQLA L ++G +LD C+APGGKT H+LE + +++++D + +RL + ENL+R
Sbjct: 238 AAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQR 297
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L A +I D ++++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 298 LELTAQVICGDARYPQ----------------QWWQGEQFDRILLDAPCSATGVIRRHPD 341
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR +DI L++ +IL+ +W+ LKPGG L++ TCS+ +E+ Q F + D+
Sbjct: 342 IKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDA 401
Query: 298 IRLNS----PG-QLLPTVNKKQDYDGFFYSLFQKR 327
+ S PG Q+LP ++ DGF+Y++ K+
Sbjct: 402 RLVGSDPAQPGRQILPG---EEAMDGFYYAVLSKQ 433
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|B5XNC2|RSMB_KLEP3 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella pneumoniae (strain 342) GN=rsmB PE=3 SV=1 | Back alignment and function description |
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Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 197/338 (58%), Gaps = 34/338 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I+D +++P
Sbjct: 117 LINGVLRQFQRQQEALLVE--FAEHENRYLHPKWLLKRLQQAWPQ--QWQEIVDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LLK++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGMKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN+ W+ LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNSTWEHLKPGGTLVYATCSILPEENSQQISAFLARTP 394
Query: 296 DSI-----RLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ + ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQ--NLPGPEEGDGFFYAKLIKRR 430
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Klebsiella pneumoniae (strain 342) (taxid: 507522) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 36/339 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ + + HE+ + +P W + +++ +P QW+ I++ +++P
Sbjct: 117 LINGVLRQFQRQQEALLAE--FAEHENRYLHPKWLLKRLQQAWPE--QWQEIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ + + LL ++GLE T P A++L TP + +P F G+ ++QD
Sbjct: 173 PMWLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L +G +LD C+APGGKT H+LE+A ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + K+ + RF ++ N+ FDRIL D PC+ +GV+RR+
Sbjct: 293 LGVKAEV------------------KQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR DI +L++ +ILN +W LKPGG L++ TCS+ EE+ +Q F
Sbjct: 335 PDIKWLRRDRDIAELAQLQAEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP 394
Query: 296 DSI-----RLNSPGQL-LPTVNKKQDYDGFFYSLFQKRK 328
D+ SPGQ LP V ++ DGFFY+ KR+
Sbjct: 395 DAELHATGTPASPGQQNLPGV---EEGDGFFYAKLIKRR 430
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia proteamaculans (strain 568) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 190/330 (57%), Gaps = 30/330 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + N +S + +P W + +++ YP QW+ I+D ++KP
Sbjct: 117 LINGVLRQFQRQQEELLQRAANN--DSRYLHPSWLLKRIQQAYP--AQWEQIIDANNQKP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+ T Y +L++++G+ A++L P +++ +P F +G+ ++QD
Sbjct: 173 PMWLRVNRLHHTREDYLQLMEQAGIAAEPHAEYRDAVRLLAPCAVTDLPGFADGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD + G +LD C+APGGKT H+LE A +++VD + RL + ENL+R
Sbjct: 233 ASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L L A + K+ + R ++ +K FDRIL D PC+ +GV+RR+
Sbjct: 293 LRLHAEV------------------KQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L+ +I+ +W LK GG +++ TCS+ E+ EQ F + H
Sbjct: 335 PDIKWLRRDSDIAELAALQAEIIEAIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRHA 394
Query: 296 DSIRLNSPGQLLP---TVNKKQDYDGFFYS 322
D+ + + Q P + +D DGFFY+
Sbjct: 395 DARLVETGNQQQPGRQNLPHPEDGDGFFYA 424
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Serratia proteamaculans (strain 568) (taxid: 399741) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 193/333 (57%), Gaps = 36/333 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ ++ ++ W +P+W +N+ + +P +W+ +++ +++P
Sbjct: 117 LINGVLRQFQRQQDELLAE--FSGQDARWLHPMWLLNRFQTAWPR--EWQAVVEANNERP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + + KLL+++G+ I P A++L P +S +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LL ++G +LD C+APGGKT H+LE A +++VD + R++ + ENLKR
Sbjct: 233 ASAQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRF--RFYKNKYFDRILADLPCTGSGVVRRN 235
L +KA + + D RF + FDRIL D PC+ +GV+RR+
Sbjct: 293 LKMKADVKVGD------------------GRFPSTWCGETQFDRILLDAPCSATGVIRRH 334
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PDI WLRR +DI +L++ +IL+ +W LKPGG LL+ TCS+ EE+ EQ F
Sbjct: 335 PDIKWLRRDSDINELAQLQSEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTP 394
Query: 296 DSI-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
D+ +PG Q LP + DGFFY+
Sbjct: 395 DAQLDGTGSTQTPGIQNLPGATEG---DGFFYA 424
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Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|Q9CKP7|RSMB_PASMU Ribosomal RNA small subunit methyltransferase B OS=Pasteurella multocida (strain Pm70) GN=rsmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 194/341 (56%), Gaps = 39/341 (11%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWN--YPIWWINQVKITYPNFFQWKNILDVGHK 58
++N +LR FLR++ E K+ + +W+ +P W +N++K YPN W+ I++ +
Sbjct: 127 LVNGVLRRFLREQ-ETLLVKV----DKHWHTLHPDWLVNRLKEAYPN---WREIVEANNH 178
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETT-IIGPLAIKLHTPISISKIPKFFNGFCSIQ 117
KPP+ LR+NQ+K + +Y LL + G+E P A++L P+++S++P F G S+Q
Sbjct: 179 KPPMWLRVNQQKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQ 238
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLK 176
D AQ +A LL +G +LDAC+APGGKT H+LE A ++++D +RL + ENL
Sbjct: 239 DVNAQWSALLLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLA 298
Query: 177 RLNLKATLILSDISKIN--LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234
R+ +AT+I D ++ LK+L + FDRIL D PC+ +GV+RR
Sbjct: 299 RMQQQATVICGDATQPAQWLKQLSESAVQ-------------FDRILLDAPCSATGVIRR 345
Query: 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294
+PDI WLR+ +DI L +IL LW +LKP G LL+ TCS+ EE+ Q F N+
Sbjct: 346 HPDIKWLRQASDISALVALQKQILQALWTVLKPNGILLYATCSVLPEENALQIEQFLTNN 405
Query: 295 KD---------SIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326
D ++ + Q LPT N DGF+Y+ +K
Sbjct: 406 VDAKLEPLPFTAVEGSVGYQFLPTENGG---DGFYYAKLRK 443
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Pasteurella multocida (strain Pm70) (taxid: 272843) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
| >sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 32/331 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + + N +S++ +P W + ++K YP QW+ ILD +++P
Sbjct: 117 LINGVLRQFQRQQVELLERAVNN--DSHYLHPSWLLARIKQAYPA--QWQQILDANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N++ + Y +LL ++ + E I A++L TP +++ +P F G+ ++QD
Sbjct: 173 PMWLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ LLD ++G +LD C+APGGKT H+LE A +++VD + RL+ + ENL+R
Sbjct: 233 ASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L+A + + D + + ++ FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LQLQAVVRVGDGRAPDT----------------WCGDQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +I+ +W LK GG L++ TCS+ EE+++Q F + H ++
Sbjct: 337 IKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEA 396
Query: 298 I-----RLNSPG-QLLPTVNKKQDYDGFFYS 322
+PG Q LP +D DGFFY+
Sbjct: 397 QLTETGTTAAPGKQNLP---HPEDGDGFFYA 424
|
Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| 445494814 | 467 | ribosomal RNA small subunit methyltransf | 0.927 | 0.653 | 0.5 | 7e-96 | |
| 395760186 | 475 | tRNA and rRNA cytosine-C5-methylases [Ja | 0.927 | 0.642 | 0.490 | 4e-93 | |
| 427402481 | 553 | ribosomal RNA small subunit methyltransf | 0.930 | 0.553 | 0.483 | 3e-88 | |
| 152981119 | 437 | tRNA and rRNA cytosine-C5-methylases [Ja | 0.927 | 0.697 | 0.515 | 2e-86 | |
| 399021791 | 438 | ribosomal RNA small subunit methyltransf | 0.939 | 0.705 | 0.506 | 2e-86 | |
| 300309418 | 424 | RNA methyltransferase [Herbaspirillum se | 0.927 | 0.719 | 0.493 | 1e-85 | |
| 134093422 | 449 | S-adenosyl-L-methionine-dependent RNA me | 0.927 | 0.679 | 0.509 | 4e-84 | |
| 193222202 | 453 | putative 16S rRNA methyltransferase B [H | 0.927 | 0.673 | 0.509 | 4e-84 | |
| 323524427 | 479 | sun protein [Burkholderia sp. CCGE1001] | 0.942 | 0.647 | 0.428 | 6e-83 | |
| 407711817 | 457 | ribosomal RNA small subunit methyltransf | 0.942 | 0.678 | 0.428 | 7e-83 |
| >gi|445494814|ref|ZP_21461858.1| ribosomal RNA small subunit methyltransferase B [Janthinobacterium sp. HH01] gi|444790975|gb|ELX12522.1| ribosomal RNA small subunit methyltransferase B [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 220/326 (67%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + ++ + + WNYP WWI+ K +P W+ +L G+ P
Sbjct: 161 MVNAVLRRFLRERKALLETALLQPL-AKWNYPQWWIDAAKAAWPQ--DWQGVLAAGNGAP 217
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLRIN RKTT+ +Y L+ +G+ T IGP A++L P+ ++ IP F +G S+QDA
Sbjct: 218 PLTLRINARKTTMSAYLATLEAAGMAATQIGPYAVRLAKPVGVTLIPGFADGLVSVQDAG 277
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGKTCH+LE+AD + ++D + RL + ENL+RL
Sbjct: 278 AQLAAPLLDVRDGMRVLDACAAPGGKTCHILELADASVTALDADAKRLARVGENLERLGQ 337
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ATL +D ++ K FDRILAD+PCT SG+VRR+PDI W
Sbjct: 338 QATLRTADAQSAG-----------------WWDGKLFDRILADVPCTASGIVRRHPDIRW 380
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S KIL+NLW+ML PGGKLLFVTCSLW +ESE QA F+ ++ ++RL
Sbjct: 381 LRRKGDTLQLATLSSKILDNLWQMLAPGGKLLFVTCSLWPQESEAQAAAFAVRNQ-AVRL 439
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
++PGQLLP QD+DG FY+LFQK
Sbjct: 440 DAPGQLLPAGGAGQDHDGLFYALFQK 465
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|395760186|ref|ZP_10440855.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 160/326 (49%), Positives = 225/326 (69%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + ++ + + WNYP WWI+ +++ YP W+ IL G+ P
Sbjct: 168 MVNAVLRRFLRERKSLLEAALQQ-PVAQWNYPQWWIDSLRLAYPR--DWQAILTAGNAVP 224
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RK+TL +Y +L ++G+ +GP A++L PI ++ IP F G S+QDA
Sbjct: 225 PLTLRVNRRKSTLEAYLAVLAEAGIAARQVGPFAVRLDKPIGVALIPGFEQGVVSVQDAG 284
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD++ GM VLDAC+APGGKTCH+LE+AD+++ ++D + RL I+ENL+RL L
Sbjct: 285 AQLAAPLLDLQDGMRVLDACAAPGGKTCHILELADVQVTAIDADAKRLPRIAENLERLGL 344
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L D ++ + +DRILAD+PCT SG+VRR+PDI W
Sbjct: 345 DASLKAQDAQSSA-----------------WWDGQQYDRILADVPCTASGIVRRHPDIRW 387
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S KIL+NLW+ML+P GKLLFVTCSLW +ESE QA F+ + ++ RL
Sbjct: 388 LRRKGDAFQLATLSAKILDNLWQMLRPDGKLLFVTCSLWPQESEAQAAAFAVRN-NATRL 446
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT + +QD+DG FY+LFQK
Sbjct: 447 TAPGQLLPTGSAEQDHDGLFYALFQK 472
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427402481|ref|ZP_18893478.1| ribosomal RNA small subunit methyltransferase B [Massilia timonae CCUG 45783] gi|425718287|gb|EKU81234.1| ribosomal RNA small subunit methyltransferase B [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 158/327 (48%), Positives = 224/327 (68%), Gaps = 21/327 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ E ++ + +NYP WWI+ ++ YP W+ +L+ G+ P
Sbjct: 246 MVNAVLRRFLRER-EALVAEALREPLARFNYPQWWIDTMRAAYPR--DWEAVLEAGNVHP 302
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKT + +Y L ++GL+ +G A++L I++++IP F +G S+QDA
Sbjct: 303 PLTLRVNRRKTDVSAYLHALNEAGLQAEQVGLTAVRLAQAINVAQIPGFADGVVSVQDAG 362
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD++ GM VLDAC+APGGK+ H+LE AD++L SVD + +RL + +NL RL L
Sbjct: 363 AQLAAPLLDLKDGMRVLDACAAPGGKSGHILETADVQLTSVDADPARLARVGDNLGRLGL 422
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
ATL+ +D + ++ + +DRILAD+PCT SG+VRR+PDI W
Sbjct: 423 DATLLAADAGSRD-----------------WWDGRQYDRILADVPCTASGIVRRHPDIRW 465
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK+D +L+ S KIL+NLW+ML P GKLLFVTCSLW +ESE QA F+ H D++RL
Sbjct: 466 LRRKSDTSQLATLSSKILDNLWQMLLPDGKLLFVTCSLWPQESEAQAAAFAARH-DAVRL 524
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
++PGQLLP QD+DG FY+LFQK+
Sbjct: 525 DAPGQLLPLGGAGQDHDGLFYALFQKK 551
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] gi|151281196|gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/326 (51%), Positives = 224/326 (68%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NA+LR FLR++ + KS + WNYP WWI++++ YP W+ IL+ G+ P
Sbjct: 130 MVNAVLRRFLRERDALLKSA-GGTQFARWNYPDWWIDRMRSAYPQ--NWQAILEAGNAAP 186
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKTT+ +Y LL + + T IGP A+KL P + +IP F G S+QDAA
Sbjct: 187 PLTLRVNRRKTTVDAYLALLAEQSVAATRIGPDAVKLAQPTPVGQIPGFNEGLVSVQDAA 246
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LLD+R GM VLDAC+APGGK+ H+LE AD++LI++DN R+ I+ENL+RL L
Sbjct: 247 AQLAASLLDLRDGMRVLDACAAPGGKSGHILESADVELIALDNEARRMPRIAENLERLQL 306
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+ATL+ D S + ++ K FDRILAD+PCT SG+VRR+PDI W
Sbjct: 307 QATLLTGDASATD-----------------WWDGKPFDRILADVPCTASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S IL+NLW+ML+P GKLLFVTCSLW +ESE QA F+ + ++ RL
Sbjct: 350 LRRKGDTTQLAAISATILDNLWQMLQPDGKLLFVTCSLWPQESEAQAAAFAVRN-NATRL 408
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT N + D+DG FY+LFQK
Sbjct: 409 PAPGQLLPTANAESDHDGLFYALFQK 434
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399021791|ref|ZP_10723882.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum sp. CF444] gi|398090570|gb|EJL81038.1| ribosomal RNA small subunit methyltransferase RsmB [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/326 (50%), Positives = 225/326 (69%), Gaps = 17/326 (5%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR FLR++ + ++ WNYP WWI+++K YP+ QW++IL G+ P
Sbjct: 127 VVNAILRRFLRERATLLP-QVEKTPAGAWNYPTWWIDRLKAAYPD--QWQDILRAGNAPP 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+RKTT+ +Y + L G+ +GP A++L P +++IP F +G S+QDAA
Sbjct: 184 PLTLRVNRRKTTVAAYLQTLTAQGIGARQVGPDAVRLDKPAPVAQIPGFTDGLASVQDAA 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+ GMYVLDAC+APGGKT HLLE ADI L+++D++ RL I ENL+RL L
Sbjct: 244 AQLAAPLLDVHDGMYVLDACAAPGGKTGHLLECADIDLVALDHDPKRLRRIEENLQRLQL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A L D + ++ K FDRILAD+PCT SG+VRR+PDI W
Sbjct: 304 SAVLKAGDA-------------RSDGAGDGWWDGKQFDRILADVPCTASGIVRRHPDIRW 350
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S +IL+NLW+MLKP GKLL VTCSLW +ESE+QA F++ ++ ++RL
Sbjct: 351 LRRKTDTTQLATLSSQILDNLWQMLKPDGKLLLVTCSLWPQESEDQAAAFAQRNQ-AVRL 409
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT + + D+DG FY+LFQK
Sbjct: 410 PAPGQLLPTASAETDHDGLFYALFQK 435
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300072203|gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 223/326 (68%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NAILR LR++ + + WNYP WWI+++K YP QW+ IL G++ P
Sbjct: 117 VVNAILRRLLRERATLMP-QATKTPPGTWNYPTWWIDRLKAAYPE--QWQAILHAGNQAP 173
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N+R+TT+ Y L+++G+ +GP A++LH P+ + ++P F G S+QDAA
Sbjct: 174 PLTLRVNRRRTTVAQYLDTLQQAGMAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAA 233
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+ GM VLDAC+APGGKT HLLE+AD+ L ++D++ RL I+ENL RL L
Sbjct: 234 AQLAAPLLDVADGMRVLDACAAPGGKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQL 293
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
KA L D + ++ + FDRILAD+PCT SG+VRR+PDI W
Sbjct: 294 KARLTTGDARADD-----------------WWDGQPFDRILADVPCTASGIVRRHPDIRW 336
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK D +L+ S +IL+ LW+ML+P GKLL VTCSLW +ESE+QA+ F++ H ++IRL
Sbjct: 337 LRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQESEQQAVAFAQKH-NAIRL 395
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT ++ D+DG FY+LFQK
Sbjct: 396 PAPGQLLPTASETADHDGLFYALFQK 421
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093422|ref|YP_001098497.1| S-adenosyl-L-methionine-dependent RNA methyltransferase [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 229/326 (70%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NAILR FLR++ + KS + WNYP WWI++++ YP W+ IL+ G+ P
Sbjct: 142 MVNAILRRFLRERDALMKSAA-GTQLARWNYPDWWIDRMRSAYPR--DWQAILEAGNAAP 198
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+NQRK ++ Y LL + G+ T+IGP+A++L P +++IP F +G S+QDAA
Sbjct: 199 PLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAA 258
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGK+ H+LE A ++L ++D++ RL I+ENL+RL L
Sbjct: 259 AQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQL 318
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L++ D T N ++ K F+RILAD+PCT SG+VRR+PDI W
Sbjct: 319 NASLLVGD---------------ATGN--SWWDGKPFERILADVPCTASGIVRRHPDIRW 361
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK+D +L+ S +IL+NLW+ML+ GKLLFVTCSLW +ESE QA F+ ++ +IRL
Sbjct: 362 LRRKSDAVQLAAISAQILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNR-AIRL 420
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT N + D+DG FY+LFQK
Sbjct: 421 PAPGQLLPTANAEDDHDGLFYALFQK 446
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|193222202|emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 317 bits (812), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 229/326 (70%), Gaps = 21/326 (6%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
M+NAILR FLR++ + KS + WNYP WWI++++ YP W+ IL+ G+ P
Sbjct: 146 MVNAILRRFLRERDALMKSAA-GTQLARWNYPDWWIDRMRSAYPR--DWQAILEAGNAAP 202
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+NQRK ++ Y LL + G+ T+IGP+A++L P +++IP F +G S+QDAA
Sbjct: 203 PLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAA 262
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAAPLLD+R GM VLDAC+APGGK+ H+LE A ++L ++D++ RL I+ENL+RL L
Sbjct: 263 AQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQL 322
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
A+L++ D T N ++ K F+RILAD+PCT SG+VRR+PDI W
Sbjct: 323 NASLLVGD---------------ATGN--SWWDGKPFERILADVPCTASGIVRRHPDIRW 365
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRRK+D +L+ S +IL+NLW+ML+ GKLLFVTCSLW +ESE QA F+ ++ +IRL
Sbjct: 366 LRRKSDAVQLAAISAQILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNR-AIRL 424
Query: 301 NSPGQLLPTVNKKQDYDGFFYSLFQK 326
+PGQLLPT N + D+DG FY+LFQK
Sbjct: 425 PAPGQLLPTANAEDDHDGLFYALFQK 450
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|323524427|ref|YP_004226580.1| sun protein [Burkholderia sp. CCGE1001] gi|323381429|gb|ADX53520.1| sun protein [Burkholderia sp. CCGE1001] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 228/348 (65%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ ++ ++ ++WNYP WWI+ V+ +P+ W+++L G+ +
Sbjct: 149 LVNAVLRNFLRER-DVLLTEAQADEVAHWNYPTWWIDAVRRAWPD--AWQDVLAAGNTQG 205
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y +L++ + + +G A+KL TP+ + +IP F G S+QDA
Sbjct: 206 PLTLRVNARHSTVEAYLHVLEQHHIAASKVGEYAVKLATPMPVDRIPGFNEGVVSVQDAG 265
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+++L+++++++SR I ENL+RL L
Sbjct: 266 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKL 325
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 326 EAEVRIGDAGAPS--KWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 371
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL+ LW ++KPGG+LL+VTCS++ EE E QA F H+D++RL
Sbjct: 372 LRRASDIPALVEAQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKHQDAVRL 431
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 432 DAPGQLLPSVARAPADPSAGSHAGEFAERSAGTNSDHDGFFYARFQKR 479
|
Source: Burkholderia sp. CCGE1001 Species: Burkholderia sp. CCGE1001 Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|407711817|ref|YP_006832382.1| ribosomal RNA small subunit methyltransferase B [Burkholderia phenoliruptrix BR3459a] gi|407234001|gb|AFT84200.1| Ribosomal RNA small subunit methyltransferase B [Burkholderia phenoliruptrix BR3459a] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 226/348 (64%), Gaps = 38/348 (10%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR FLR++ + + ++WNYP WWI+ V+ +P+ W+++L G+ +
Sbjct: 127 LVNAVLRNFLRERDALLTEAQAD-EVAHWNYPTWWIDAVRRAWPD--AWQDVLAAGNTQG 183
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
PLTLR+N R +T+ +Y +L++ + + +G A+KL TP+ + +IP F G S+QDA
Sbjct: 184 PLTLRVNARHSTVEAYLHVLEQHHIAASKVGEYAVKLATPMPVDRIPGFNEGVVSVQDAG 243
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180
AQLAA LL +R GM VLDAC+APGGKT HLLE+A+++L+++++++SR I ENL+RL L
Sbjct: 244 AQLAAQLLGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKL 303
Query: 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW 240
+A + + D + K + DI++ FDRILAD+PC+ SG+VRR+PDI W
Sbjct: 304 EAEVRIGDAGAPS--KWHDDIDQP------------FDRILADVPCSASGIVRRHPDIRW 349
Query: 241 LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300
LRR +DI L + +IL+ LW ++KPGG+LL+VTCS++ EE E QA F H+D++RL
Sbjct: 350 LRRASDIPALVEEQRRILDALWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKHQDAVRL 409
Query: 301 NSPGQLLPTVNKK---------------------QDYDGFFYSLFQKR 327
++PGQLLP+V + D+DGFFY+ FQKR
Sbjct: 410 DAPGQLLPSVARAPADPSAGSHAGEFAEPSAGTNSDHDGFFYARFQKR 457
|
Source: Burkholderia phenoliruptrix BR3459a Species: Burkholderia phenoliruptrix Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B5FJI4 | RSMB_SALDC | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3403 | 0.9057 | 0.6946 | yes | N/A |
| A8GKG7 | RSMB_SERP5 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3454 | 0.9118 | 0.6993 | yes | N/A |
| Q1CCX4 | RSMB_YERPN | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| B5R1E5 | RSMB_SALEP | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| B4TJX9 | RSMB_SALHS | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| B5BGV5 | RSMB_SALPK | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| Q3YWX1 | RSMB_SHISS | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| Q664V2 | RSMB_YERPS | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| B5XNC2 | RSMB_KLEP3 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3579 | 0.9240 | 0.7053 | yes | N/A |
| B7LHZ0 | RSMB_ECO55 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| B7UK12 | RSMB_ECO27 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| B5RH47 | RSMB_SALG2 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| Q8ZLM5 | RSMB_SALTY | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| A4TH21 | RSMB_YERPP | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| B2VK95 | RSMB_ERWT9 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3524 | 0.9057 | 0.6946 | yes | N/A |
| B1X6E1 | RSMB_ECODH | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3453 | 0.9027 | 0.6923 | yes | N/A |
| A9N8B3 | RSMB_SALPB | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| Q8ZJ81 | RSMB_YERPE | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| A1JRZ3 | RSMB_YERE8 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3601 | 0.9240 | 0.7086 | yes | N/A |
| C0PZV1 | RSMB_SALPC | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3403 | 0.9057 | 0.6946 | yes | N/A |
| A7MPE7 | RSMB_CROS8 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3513 | 0.9027 | 0.6923 | yes | N/A |
| Q9KVU5 | RSMB_VIBCH | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3522 | 0.9270 | 0.7027 | yes | N/A |
| B4TXB2 | RSMB_SALSV | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3403 | 0.9057 | 0.6946 | yes | N/A |
| Q9CKP7 | RSMB_PASMU | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3695 | 0.9179 | 0.6771 | yes | N/A |
| C4ZUE3 | RSMB_ECOBW | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3453 | 0.9027 | 0.6923 | yes | N/A |
| A9R925 | RSMB_YERPG | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| C6DFR7 | RSMB_PECCP | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3393 | 0.9027 | 0.6923 | yes | N/A |
| Q6D000 | RSMB_ERWCT | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| B2K506 | RSMB_YERPB | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| P44788 | RSMB_HAEIN | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3911 | 0.9270 | 0.6762 | yes | N/A |
| A7FNK4 | RSMB_YERP3 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| Q7VKC4 | RSMB_HAEDU | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3753 | 0.9118 | 0.6896 | yes | N/A |
| Q5PIT6 | RSMB_SALPA | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| B1IQ11 | RSMB_ECOLC | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3453 | 0.9027 | 0.6923 | yes | N/A |
| B7M0Z4 | RSMB_ECO8A | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| A6TEU2 | RSMB_KLEP7 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3598 | 0.9209 | 0.7030 | yes | N/A |
| A7ZSH7 | RSMB_ECO24 | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| B4SUR0 | RSMB_SALNS | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3373 | 0.9057 | 0.6946 | yes | N/A |
| B6I202 | RSMB_ECOSE | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3423 | 0.9027 | 0.6923 | yes | N/A |
| B1JJH6 | RSMB_YERPY | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| Q87KD3 | RSMB_VIBPA | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3630 | 0.9300 | 0.7166 | yes | N/A |
| Q32B61 | RSMB_SHIDS | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3453 | 0.9027 | 0.6923 | yes | N/A |
| Q7MGK4 | RSMB_VIBVY | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3522 | 0.9270 | 0.7159 | yes | N/A |
| A8A593 | RSMB_ECOHS | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3453 | 0.9027 | 0.6923 | yes | N/A |
| Q8DDE5 | RSMB_VIBVU | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3492 | 0.9270 | 0.7159 | yes | N/A |
| Q1C2X7 | RSMB_YERPA | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3564 | 0.9088 | 0.6969 | yes | N/A |
| Q57J62 | RSMB_SALCH | 2, ., 1, ., 1, ., 1, 7, 6 | 0.3403 | 0.9057 | 0.6946 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 329 | |||
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 1e-126 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 1e-71 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 3e-69 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 3e-57 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 3e-57 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 9e-50 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 2e-40 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 3e-31 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 6e-27 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 9e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 0.002 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 366 bits (942), Expect = e-126
Identities = 138/336 (41%), Positives = 206/336 (61%), Gaps = 31/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR F R++ E+ +++ + +N+P W I ++K YP QW+ IL +++P
Sbjct: 114 LVNAVLRRFQREQEELL-AELQADPVARYNHPSWLIKRLKKAYPE--QWQAILAANNQRP 170
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLE--TTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LR+N+R + +Y LL ++G+E +GP AI+L TP+ + ++P F G+ S+QD
Sbjct: 171 PMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQD 230
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177
AAAQLAA LL ++G VLDAC+APGGKT H+LE+A +++++D + RL + ENL+R
Sbjct: 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR 290
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L LKAT+I+ D +++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 291 LGLKATVIVGDARDPA----------------QWWDGQPFDRILLDAPCSATGVIRRHPD 334
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI L+ +IL+ LW +LKPGG LL+ TCS+ EE+E+Q F H D+
Sbjct: 335 IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDA 394
Query: 298 IRL------NSPGQLLPTVNKKQDYDGFFYSLFQKR 327
L QLLP +D DGFFY+L KR
Sbjct: 395 ELLDTGTPQQPGRQLLPGE---EDGDGFFYALLIKR 427
|
Length = 427 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 1e-71
Identities = 104/350 (29%), Positives = 172/350 (49%), Gaps = 42/350 (12%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+NA+LR R + + + +++P W + ++ + + I + P
Sbjct: 26 FVNAVLRRLERSEEALLEEI--LRPAFRYSHPEWLVEKLPDALGED-EAEAIAAALLRPP 82
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P +LR+N K + + L+++G+ +++ I ++P+F G +QD
Sbjct: 83 PRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQD 142
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENL 175
A+QL A +LD + G VLD C+APGGKT HL E+ + +++VD + RL + ENL
Sbjct: 143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENL 202
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
KRL ++ ++++ D + + FDRIL D PC+G+GV+RR+
Sbjct: 203 KRLGVRNVIVVN-----------KDARRLAELLP---GGEKFDRILLDAPCSGTGVIRRD 248
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295
PD+ W R DI +L+K +IL K+LKPGG L++ TCSL EE+EE F + H
Sbjct: 249 PDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308
Query: 296 D----SIRLNSPG-------------QLLPTVNKKQDYDGFFYSLFQKRK 328
D +RL +L P V+ DGFF + +K++
Sbjct: 309 DFELEPVRLPWGPLFEGLGSELGKTRRLYPHVHGT---DGFFIAKLRKKR 355
|
Length = 355 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 3e-69
Identities = 110/339 (32%), Positives = 185/339 (54%), Gaps = 33/339 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++N +LR F R++ E+ + +P W + +++ YP W++I + +++P
Sbjct: 109 LVNGVLRRFQREQEELLAEFNALDAR--YLHPEWLVKRLQKAYPGQ--WQSICEANNQRP 164
Query: 61 PLTLRINQRKTTLISYNKLLKKSGL--ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ K + + LL ++G+ + P A++L TP ++ +P F G+ ++QD
Sbjct: 165 PMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQD 224
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ A L ++ +LDAC+APGGKT H+LE+A +++++D + RL + ENLKR
Sbjct: 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKR 284
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L L + ++ +N+ FDRIL D PC+ +GV+RR+PD
Sbjct: 285 LGLTIK-----AETKDGDGRGPS---------QWAENEQFDRILLDAPCSATGVIRRHPD 330
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD- 296
I WLR+ DI +L++ +IL+ +W +LK GG L++ TCS+ EE+ EQ F + H D
Sbjct: 331 IKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDF 390
Query: 297 ----SIRLNSPG----QLLPTVNKKQDYDGFFYSLFQKR 327
+ Q+LP + DGFFY+ K+
Sbjct: 391 PFEKTGTPEQVRDGGLQILPHAEEG---DGFFYAKLIKK 426
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 3e-57
Identities = 116/345 (33%), Positives = 180/345 (52%), Gaps = 44/345 (12%)
Query: 2 INAILREFLRKK--GEIFK-----SKMYNIHESYWNYPIW----WINQVKIT-YPNFFQW 49
+N ILR++LR + G+ + I S+ P W W+ + + +W
Sbjct: 116 VNGILRQYLRAREAGDPLPLPEDPIERLAILHSF---PDWLVKLWLEWLGLEEAEQLCKW 172
Query: 50 KNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIGPL--AIKL-HTPISISKI 106
N + P L LRIN +T+L L ++G+ T I L ++L P SI ++
Sbjct: 173 FN------QPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQL 226
Query: 107 PKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE-IADI-KLISVDNN 164
P + G+ ++QD +AQL APLLD + G +LDAC+APGGKT H+ E + D ++ +VD +
Sbjct: 227 PGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRS 286
Query: 165 LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL 224
SRL + EN +RL LK+ +K L D + ++ YFDRIL D
Sbjct: 287 ASRLKKLQENAQRLGLKS-----------IKILAADSRNLLELKPQW--RGYFDRILLDA 333
Query: 225 PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284
PC+G G + R+PD W + I++L+ ++L +L +LKPGG L++ TC+L E+E
Sbjct: 334 PCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENE 393
Query: 285 EQAIIFSKNHKDSIRLNSPGQ-LLPTVNKKQDYDGFFYSLFQKRK 328
Q F H D +L P Q + P +QD DGFF ++ +K+
Sbjct: 394 AQIEQFLARHPD-WKLEPPKQKIWP---HRQDGDGFFMAVLRKKS 434
|
Length = 434 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 3e-57
Identities = 109/360 (30%), Positives = 178/360 (49%), Gaps = 64/360 (17%)
Query: 1 MINAILREFLRKKGEIFKS-----KMYNIHESYWNYPIW----WINQ--VKITYPNFFQW 49
+N +LR LR+ K +I S+ P+W WI+Q +
Sbjct: 117 FVNGVLRNILREGLPDIDEIKDPVKRLSIKYSH---PVWLVKRWIDQYGEEKA------- 166
Query: 50 KNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTPISISKIP 107
+ IL+ ++ P ++R+N K ++ + L++ G E + P A+ + +I+
Sbjct: 167 EKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVI-EKGNIAGTD 225
Query: 108 KFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNL 165
F +G +IQD ++ L AP LD + G VLDAC+APGGKT H+ E+ K++++D +
Sbjct: 226 LFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE 285
Query: 166 SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLP 225
+L +I EN KRL ++ I K L D +K + +F + FD+IL D P
Sbjct: 286 HKLKLIEENAKRL---------GLTNIETKAL--DA-RKVHEKF----AEKFDKILVDAP 329
Query: 226 CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285
C+G GV+RR PDI + + K DI+ L + +IL ++ + LK GG L++ TC++ EE+EE
Sbjct: 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEE 389
Query: 286 QAIIFSKNHKD-------------SIRLNSPG--QLLPTVNKKQDY--DGFFYSLFQKRK 328
F + H + + G Q+LP DY DGFF + +K+
Sbjct: 390 VIEAFLEEHPEFELVPLQHEKPDELVYEVKDGYLQILP-----NDYGTDGFFIAKLRKKG 444
|
Length = 444 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 9e-50
Identities = 97/294 (32%), Positives = 152/294 (51%), Gaps = 37/294 (12%)
Query: 52 ILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG---PLAIKLHTPISISKIPK 108
IL+ + PP TLR N KT S + L+ +G++ +G P SI +P
Sbjct: 1 ILEANNCSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPP 60
Query: 109 FFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLS 166
F NG ++QDA++QL A L+ + ++LD C+APGGKT H+ E+ + +++VD N
Sbjct: 61 FENGAVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQ 120
Query: 167 RLNMISENLKRLNLKATLILS-DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLP 225
RL + N++RL + ++ D +I+ K L + FDRIL D P
Sbjct: 121 RLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGE----------------FDRILLDAP 164
Query: 226 CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285
C+G+GV+RR+PDI WLRR+ DI +L++ ++L W ++KPGG L++ TCS+ EE+E
Sbjct: 165 CSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEA 224
Query: 286 QAIIFSKNHKDSIRL------NSPGQLLPTVNK--KQDY------DGFFYSLFQ 325
F + D + L L + K Q DGFF++ +
Sbjct: 225 VIKYFLQKRPD-VELVPTGLSEGKIALAKRIVKGGLQSLPHELNRDGFFFAKLR 277
|
Length = 277 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-40
Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 47/310 (15%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
++NA+LR + + + K +H Y ++P W +N + P + I++ +
Sbjct: 111 LVNAVLR----RLRTVPEPK--ELHLKY-SHPKWLVNYWRSFLPEEAVLR-IMEWNQEPL 162
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISI---------SKIPKFFN 111
P LR+N T K+L + G + G H+P S+ + +
Sbjct: 163 PTMLRVNSLAITREEVIKILAEEG-TEAVPGK-----HSPFSLIVRKLGVNMNDSRVIKD 216
Query: 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLN 169
G ++Q ++Q+ L+++ G+ VLD C+APGGKT + E+ K+++VD + ++
Sbjct: 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276
Query: 170 MISENLKRLNLKATLIL-SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTG 228
++ ++ KRL L + I +D ++ + ++ FDRIL D PCT
Sbjct: 277 LVEKHAKRLKLSSIEIKIADAERLT----------------EYVQDT-FDRILVDAPCTS 319
Query: 229 SGVVRRNPDIPWLRR--KNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286
G R +P++ LRR K D KKLS+ +I++ WK+L+ GG LL+ TC++ EE+ E
Sbjct: 320 LGTARNHPEV--LRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEV 377
Query: 287 AIIFSKNHKD 296
F KD
Sbjct: 378 VKRFVYEQKD 387
|
Length = 431 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-31
Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 40/282 (14%)
Query: 63 TLRINQR--KTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAA 120
TL+IN L + +L+ + E +K +P SI P++ G+ Q+A+
Sbjct: 5 TLKINVEDLLERLENRGVVLEPTCEE----YFFEVKE-SPFSIGSTPEYLFGYYYPQEAS 59
Query: 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRL 178
+ + L+ R VLD +APGGKT + ++ K +++ + + SR + N+ R+
Sbjct: 60 SMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNINRM 119
Query: 179 NLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI 238
+ T++ IN +F Y K FD IL D PC+G GV+R++P
Sbjct: 120 GVLNTIV---------------INAD-GRKFGAYLLK-FDAILLDAPCSGEGVIRKDPSR 162
Query: 239 PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
+ DIK S ++++ LKPGG L++ TCSL EE+EE + D +
Sbjct: 163 KRNWSEEDIKYCSLLQKELIDAAIDALKPGGVLVYSTCSLEVEENEEVIDYILRKRPDVV 222
Query: 299 RLNSPGQLLPTVNKKQDY--------------DGFFYSLFQK 326
G +N + +GFF + +K
Sbjct: 223 EEIIKGDEFFGINIGKGEVKGALRVFPQNYDCEGFFVAKLRK 264
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 48/308 (15%)
Query: 31 YPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII 90
+P W + + Y + + +L ++ P RIN+ KTT K L +
Sbjct: 151 HPEWLLERWIARY-GEERTEAMLSYNNQAPLFGFRINRLKTT---PEKFLAAPADASVTF 206
Query: 91 GPLAIKLHTPISISKIPKFF-------------NGFCSIQDAAAQLAAPLLDIRSGMYVL 137
S +P FF G S+Q+ LA LL+ + G VL
Sbjct: 207 EK-----------SGLPNFFLSKDFSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVL 255
Query: 138 DACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195
D C+APGGK+ + E+ + + +VD +L I + + L ++ I I
Sbjct: 256 DLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH------ASALGITIIETI--- 306
Query: 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255
+ F + D IL D PCTG+GV+ R ++ W + +L
Sbjct: 307 ---------EGDARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQA 357
Query: 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQD 315
++L++ +LKPGG L++ TCS+ EE+E Q F + H + SPG L ++
Sbjct: 358 ELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEVAH 417
Query: 316 YDGFFYSL 323
G +L
Sbjct: 418 PKGAILTL 425
|
Length = 445 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 112 GFCSIQDAAAQL--AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNL--SR 167
G IQ+A++ L AA D + VLD +APG KT + + + + V N SR
Sbjct: 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASR 150
Query: 168 LNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN--NR-FRFYKNKYFDRILADL 224
+ ++ N+ R + + T+ R F + FD IL D
Sbjct: 151 VKVLHANISRCGVSNVAL-------------------THFDGRVFGAALPETFDAILLDA 191
Query: 225 PCTGSGVVRRNPDI--PW-LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281
PC+G G VR++PD W +I + +++ + + LKPGG L++ TC+L
Sbjct: 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQR---ELIESAFHALKPGGTLVYSTCTL--N 246
Query: 282 ESEEQAIIFS--KNHKDSIRLNSPGQLLPTVNKK-----------QDYD--GFFYSLFQK 326
E QA+ + + D++ G L P K Q YD GFF + +K
Sbjct: 247 REENQAVCLWLKETYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRK 306
|
Length = 470 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-06
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 39/140 (27%)
Query: 136 VLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN-LKRLNLKATLILSDISKINL 194
VLD G L ++ VD + L + + L ++ D +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE--- 58
Query: 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 254
++ FD I++D P D+
Sbjct: 59 --------------LPPEADESFDVIISDPPLHHLV-----EDLA--------------- 84
Query: 255 CKILNNLWKMLKPGGKLLFV 274
+ L ++LKPGG L+
Sbjct: 85 -RFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.002
Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 40/182 (21%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRLNLK-ATLIL 186
++SG+ VLD G T L E +++ +D + + EN K+L + I
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60
Query: 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND 246
DI ++ + ++ FD ++++ L D
Sbjct: 61 GDIEELPQLQ---------------LEDNSFDVVISNEV---------------LNHLPD 90
Query: 247 IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL 306
K+L + ++LKPGG L+ L E + +L
Sbjct: 91 P-------DKVLEEIIRVLKPGGVLIVSDPVLLSELPALLEDLERLYAGVLEGAIGKKKL 143
Query: 307 LP 308
L
Sbjct: 144 LT 145
|
This family appears to be have methyltransferase activity. Length = 151 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| KOG1122|consensus | 460 | 100.0 | ||
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| KOG2198|consensus | 375 | 100.0 | ||
| KOG2360|consensus | 413 | 100.0 | ||
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.75 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.73 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.67 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.66 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.66 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.65 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.65 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.64 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.64 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.64 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.64 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.64 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.62 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.62 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.57 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.56 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.53 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.52 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.52 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.52 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.52 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.52 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.51 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.51 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.5 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.49 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.48 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.48 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.47 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.46 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.46 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.46 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.45 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.45 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.45 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.44 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.44 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.44 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.42 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.42 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.41 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.41 | |
| KOG1540|consensus | 296 | 99.41 | ||
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.4 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.39 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.39 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.38 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.38 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.38 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.37 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.37 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.37 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.36 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.36 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.35 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.35 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.35 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.34 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.34 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.33 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.33 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.33 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.32 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.32 | |
| PLN02476 | 278 | O-methyltransferase | 99.32 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.31 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.3 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.3 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.3 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.3 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.3 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.29 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.29 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.29 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.28 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.28 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.27 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.27 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.26 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.26 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| KOG2904|consensus | 328 | 99.25 | ||
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.24 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.24 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.24 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.24 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.24 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.24 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.23 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.23 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.23 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.22 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.22 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.21 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.2 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.19 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.19 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.19 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.18 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.18 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.17 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.16 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.13 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.12 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.12 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.12 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.11 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.11 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.1 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.1 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.09 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.09 | |
| KOG1270|consensus | 282 | 99.09 | ||
| PRK04457 | 262 | spermidine synthase; Provisional | 99.06 | |
| KOG2671|consensus | 421 | 99.05 | ||
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.05 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.04 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.01 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.01 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 99.01 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.01 | |
| KOG1271|consensus | 227 | 99.0 | ||
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.0 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.0 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.99 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.99 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.99 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.99 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.99 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.98 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.97 | |
| KOG2915|consensus | 314 | 98.92 | ||
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.92 | |
| KOG4589|consensus | 232 | 98.92 | ||
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.91 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.89 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.89 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.89 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.88 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.88 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.87 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.87 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.86 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.85 | |
| PLN02366 | 308 | spermidine synthase | 98.84 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.83 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.82 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.82 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.8 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.77 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.77 | |
| KOG3420|consensus | 185 | 98.77 | ||
| PRK05785 | 226 | hypothetical protein; Provisional | 98.77 | |
| KOG2187|consensus | 534 | 98.74 | ||
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.74 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.71 | |
| KOG1663|consensus | 237 | 98.71 | ||
| KOG1541|consensus | 270 | 98.69 | ||
| PRK06202 | 232 | hypothetical protein; Provisional | 98.69 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.68 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.67 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.67 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.66 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.66 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.65 | |
| KOG3191|consensus | 209 | 98.62 | ||
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.62 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.62 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.61 | |
| PLN02823 | 336 | spermine synthase | 98.61 | |
| KOG1596|consensus | 317 | 98.55 | ||
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.54 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.48 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.48 | |
| KOG2899|consensus | 288 | 98.47 | ||
| KOG1661|consensus | 237 | 98.47 | ||
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.47 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.44 | |
| KOG2730|consensus | 263 | 98.39 | ||
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.38 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.34 | |
| KOG4300|consensus | 252 | 98.34 | ||
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.34 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.31 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.3 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 98.29 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.29 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.27 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.27 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.26 | |
| KOG1499|consensus | 346 | 98.25 | ||
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.19 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.18 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.12 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.12 | |
| KOG0820|consensus | 315 | 98.1 | ||
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.07 | |
| KOG1099|consensus | 294 | 98.06 | ||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.97 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.97 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.94 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.94 | |
| KOG1500|consensus | 517 | 97.94 | ||
| KOG3010|consensus | 261 | 97.93 | ||
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 97.91 | |
| KOG1975|consensus | 389 | 97.9 | ||
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.88 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.87 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.86 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.86 | |
| KOG2361|consensus | 264 | 97.85 | ||
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.81 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.81 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.79 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.77 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.76 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.7 | |
| KOG1253|consensus | 525 | 97.69 | ||
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.65 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.62 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.59 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.57 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.53 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.52 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.49 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.48 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.46 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.44 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.44 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.4 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.37 | |
| KOG1098|consensus | 780 | 97.34 | ||
| KOG0024|consensus | 354 | 97.28 | ||
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.24 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.21 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.18 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 97.18 | |
| KOG1709|consensus | 271 | 97.18 | ||
| KOG1227|consensus | 351 | 97.05 | ||
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.04 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.03 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.96 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.91 | |
| KOG3178|consensus | 342 | 96.71 | ||
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.68 | |
| KOG3045|consensus | 325 | 96.65 | ||
| KOG3115|consensus | 249 | 96.59 | ||
| KOG2078|consensus | 495 | 96.51 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.51 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.45 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.36 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.33 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.33 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.27 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.19 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.19 | |
| KOG1269|consensus | 364 | 96.18 | ||
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.08 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.07 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.93 | |
| KOG2782|consensus | 303 | 95.74 | ||
| PRK13699 | 227 | putative methylase; Provisional | 95.63 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.52 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.39 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.21 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.15 | |
| PHA01634 | 156 | hypothetical protein | 94.92 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.88 | |
| KOG3987|consensus | 288 | 94.84 | ||
| KOG2940|consensus | 325 | 94.8 | ||
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.67 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 94.62 | |
| KOG1562|consensus | 337 | 94.61 | ||
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.39 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.26 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.22 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 94.22 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.2 | |
| KOG1501|consensus | 636 | 94.15 | ||
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.05 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.03 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.93 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 93.92 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 93.6 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.49 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 93.31 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 93.22 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 93.15 | |
| KOG1331|consensus | 293 | 92.93 | ||
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.9 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 92.86 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.77 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 92.6 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.56 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 92.56 | |
| KOG2352|consensus | 482 | 92.52 | ||
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 92.51 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.44 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 92.43 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 92.32 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 92.27 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 92.25 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 92.21 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.06 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.98 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.91 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 91.78 | |
| KOG3201|consensus | 201 | 91.72 | ||
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 91.64 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 91.57 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 91.41 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 91.39 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 91.25 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 91.23 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 91.08 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 90.95 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 90.93 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 90.8 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 90.77 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 90.74 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.59 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 90.59 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 90.52 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 90.5 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 90.4 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 90.35 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 90.22 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 90.2 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 90.18 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 90.16 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 90.15 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.95 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.92 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 89.85 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 89.84 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 89.79 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.65 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 89.61 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 89.58 | |
| KOG2651|consensus | 476 | 89.56 | ||
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.54 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.24 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 89.2 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 89.01 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 88.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.95 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 88.94 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 88.94 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 88.86 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 88.8 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 88.79 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 88.78 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 88.78 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 88.66 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.56 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 88.51 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 88.46 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 88.42 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 88.31 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 88.2 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.16 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 88.1 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 87.91 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.9 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 87.85 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 87.81 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 87.68 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.68 | |
| PRK08643 | 256 | acetoin reductase; Validated | 87.59 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 87.59 | |
| KOG0023|consensus | 360 | 87.54 | ||
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 87.42 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 87.42 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 87.41 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 87.4 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.37 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 87.26 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 87.21 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 87.03 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 86.99 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 86.86 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.84 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.77 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.77 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.71 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.61 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 86.54 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 86.53 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 86.4 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 86.21 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 86.18 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 86.17 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 86.16 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 86.0 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 85.96 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.96 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 85.89 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 85.84 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 85.63 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.59 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 85.58 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 85.51 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.49 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 85.47 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 85.44 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.34 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 85.29 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 85.27 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 85.11 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 85.03 | |
| KOG4174|consensus | 282 | 85.01 | ||
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 84.97 | |
| KOG4058|consensus | 199 | 84.91 | ||
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 84.81 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 84.8 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 84.76 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 84.52 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 84.48 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.14 | |
| KOG3673|consensus | 845 | 84.07 | ||
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 84.04 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 84.04 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 83.91 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 83.8 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 83.72 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 83.61 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 83.53 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.44 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.44 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 83.44 | |
| KOG2793|consensus | 248 | 83.43 | ||
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 83.28 | |
| KOG0822|consensus | 649 | 83.24 | ||
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.13 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 83.04 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 82.98 | |
| KOG1201|consensus | 300 | 82.97 | ||
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 82.93 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 82.87 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 82.78 | |
| PRK05717 | 255 | oxidoreductase; Validated | 82.75 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 82.74 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.7 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 82.6 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 82.25 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 81.71 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 81.68 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 81.34 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 81.33 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 81.29 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 81.27 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 81.2 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 80.99 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 80.59 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 80.4 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 80.37 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 80.34 |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-70 Score=522.11 Aligned_cols=307 Identities=33% Similarity=0.562 Sum_probs=272.2
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||++||++.|.......... .....|++|.|++++|.+.||. ++++++++++++++|.++|||+++.+++++.+.|
T Consensus 26 ~~n~~lr~~~r~~~~~~~~~~--~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l 102 (355)
T COG0144 26 FVNAVLRRLERSEEALLEEIL--RPAFRYSHPEWLVEKLPDALGE-DEAEAIAAALLRPPPRSLRVNTLKADVEELLEAL 102 (355)
T ss_pred hhhhhHhhhhhccchhhhhhh--cccccccCcHHHHHHHHHHcCh-HHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHH
Confidence 689999999987655443332 1116799999999999999998 5699999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC---
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--- 155 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--- 155 (329)
.+.++...+ +.+.++.+....++..+++|.+|++++||.+||+++.+|+|+||++|||+||||||||+|+|+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~ 182 (355)
T COG0144 103 EEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEG 182 (355)
T ss_pred hhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCC
Confidence 998776544 345678888888899999999999999999999999999999999999999999999999999987
Q ss_pred CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 156 IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 156 ~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
..|+|+|++++|++.+++|++|+|+. +.+++.|++.+.. .+....+||+||+||||||+|++||
T Consensus 183 ~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~---------------~~~~~~~fD~iLlDaPCSg~G~irr 247 (355)
T COG0144 183 AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE---------------LLPGGEKFDRILLDAPCSGTGVIRR 247 (355)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc---------------cccccCcCcEEEECCCCCCCccccc
Confidence 35699999999999999999999998 7888899876540 1112236999999999999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC-----------
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------- 303 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~----------- 303 (329)
||+++|.++++++..++.+|.+||++|+++|||||+|||||||++++|||+||++||++++++++++..
T Consensus 248 ~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~ 327 (355)
T COG0144 248 DPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPVRLPWGPLFEGLG 327 (355)
T ss_pred CccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998877642
Q ss_pred ------CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 ------GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 ------~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+. +++||||+|+|+|..
T Consensus 328 ~~~~~~~r~~p~~---~~~dGFFia~l~k~~ 355 (355)
T COG0144 328 SELGKTRRLYPHV---HGTDGFFIAKLRKKR 355 (355)
T ss_pred cccCCeEEECCCC---CCCCCeEEEEEEeCC
Confidence 2567887 778999999999963
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=514.35 Aligned_cols=308 Identities=33% Similarity=0.541 Sum_probs=274.6
Q ss_pred Ceeeecchhhhcccccc----cccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHH
Q psy15212 1 MINAILREFLRKKGEIF----KSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISY 76 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~----~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~ 76 (329)
|||||||++.|+.+... .......++++||+|.||+++|.+.||. ++++++++++++++|+++|||++|++++++
T Consensus 115 fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~ 193 (434)
T PRK14901 115 VVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLWLEWLGL-EEAEQLCKWFNQPPSLDLRINPLRTSLEEV 193 (434)
T ss_pred hcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHHHHHhCH-HHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 79999999999744211 1111134788999999999999999997 788999999999999999999999999999
Q ss_pred HHHHHHCCCeeEE--eCCceEEEcCC-CCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHh
Q psy15212 77 NKLLKKSGLETTI--IGPLAIKLHTP-ISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI 153 (329)
Q Consensus 77 ~~~l~~~g~~~~~--~~~~~~~~~~~-~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~ 153 (329)
.+.|+++|+..++ +.++++.+... ..+..+++|.+|.+++||++|++++.++++++|++|||+|||||+||++++++
T Consensus 194 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~ 273 (434)
T PRK14901 194 QAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAEL 273 (434)
T ss_pred HHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHH
Confidence 9999999998766 45788888753 35888999999999999999999999999999999999999999999999998
Q ss_pred CC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccc--cCCCCCCEEEEccCCcc
Q psy15212 154 AD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRF--YKNKYFDRILADLPCTG 228 (329)
Q Consensus 154 ~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~Vl~D~PCsg 228 (329)
++ ++|+|+|+++.|++.+++|++++|+. ++++++|+.... .. ...+.||+|++||||||
T Consensus 274 ~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~----------------~~~~~~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 274 MGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL----------------ELKPQWRGYFDRILLDAPCSG 337 (434)
T ss_pred hCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc----------------cccccccccCCEEEEeCCCCc
Confidence 75 79999999999999999999999997 899999988653 10 12357999999999999
Q ss_pred ccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccC
Q psy15212 229 SGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLP 308 (329)
Q Consensus 229 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p 308 (329)
+|+++++|+++|.++++++..+..+|.++|.+|+++|||||+|||||||++++|||++|.+|+++||++++.+....++|
T Consensus 338 ~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P 417 (434)
T PRK14901 338 LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWP 417 (434)
T ss_pred ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987653322899
Q ss_pred CCCCCCCCCeEEEEEEEecC
Q psy15212 309 TVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 309 ~~~~~~~~~gff~a~l~k~~ 328 (329)
+. +++||||+|+|+|.+
T Consensus 418 ~~---~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 418 HR---QDGDGFFMAVLRKKS 434 (434)
T ss_pred CC---CCCCcEEEEEEEeCC
Confidence 98 899999999999974
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-67 Score=509.26 Aligned_cols=299 Identities=27% Similarity=0.497 Sum_probs=270.1
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.|+.+ +.+++++||+|.||+++|.+.||. ++++++++++++++|+++|||++|++++++.+.|
T Consensus 111 fVNaVLr~~~r~~~-------~~~l~~~~s~P~wl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l 182 (431)
T PRK14903 111 LVNAVLRRLRTVPE-------PKELHLKYSHPKWLVNYWRSFLPE-EAVLRIMEWNQEPLPTMLRVNSLAITREEVIKIL 182 (431)
T ss_pred HHHHHHHHHHHhhc-------chhhhhhhcCcHHHHHHHHHHcCH-HHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHH
Confidence 79999999998621 135788999999999999999997 7899999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcC-CCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--
Q psy15212 81 KKSGLETTI--IGPLAIKLHT-PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-- 155 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-- 155 (329)
+.+|+..++ +.++++.+.. ..++..+++|++|.+++||.+|++++.++++++|++|||+|||||+||++++++++
T Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~ 262 (431)
T PRK14903 183 AEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQ 262 (431)
T ss_pred HHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCC
Confidence 999988765 5578888875 45688899999999999999999999999999999999999999999999999874
Q ss_pred CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 156 IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 156 ~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
++|+|+|++++|++.+++|++++|+. ++++.+|+..+. .+ ..+.||+|++||||||+|++++
T Consensus 263 g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~----------------~~-~~~~fD~Vl~DaPCsg~G~~~~ 325 (431)
T PRK14903 263 GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT----------------EY-VQDTFDRILVDAPCTSLGTARN 325 (431)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh----------------hh-hhccCCEEEECCCCCCCccccC
Confidence 79999999999999999999999997 789999988653 11 2467999999999999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC-----------
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------- 303 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~----------- 303 (329)
+|+++|.++++++..+...|.++|.+++++|||||+|||||||+.++|||++|++||++||++++++..
T Consensus 326 ~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~~~~~~~~~~~~~ 405 (431)
T PRK14903 326 HPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDIRDKLEEFEVEGI 405 (431)
T ss_pred ChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999865532
Q ss_pred -----CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 -----GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 -----~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+ +.+||||+|+|+|.+
T Consensus 406 ~~~~~~~~~P~----~~~dGFf~a~L~k~~ 431 (431)
T PRK14903 406 WDGYGFLMLPD----ETLTPFYVSVLRKMG 431 (431)
T ss_pred cCCCcEEECcC----CCCCcEEEEEEEeCC
Confidence 145676 468999999999974
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=505.50 Aligned_cols=304 Identities=37% Similarity=0.698 Sum_probs=269.4
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.|+.+...+. ...++++||+|.||+++|.+.|++ +++++++++++++|+|+|||+.|++++++.+.|
T Consensus 109 fVNgVLr~i~r~~~~~~~~--~~~l~~~~s~P~wl~~~~~~~~~~--~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l 184 (426)
T TIGR00563 109 LVNGVLRRFQREQEELLAE--FNALDARYLHPEWLVKRLQKAYPG--QWQSICEANNQRPPMWLRINRTKHSRDEWLALL 184 (426)
T ss_pred hHHHHHHHHhhcchhhcch--hHhHHHHcCCCHHHHHHHHHHhHH--HHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHH
Confidence 7999999999975432111 135788999999999999999965 788999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK 157 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~ 157 (329)
+++|+...+ +.++++.+..+..+..++.|++|++++||.+|++++.++++++|++|||+|||||+||++++++++ ++
T Consensus 185 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~ 264 (426)
T TIGR00563 185 AEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQ 264 (426)
T ss_pred HhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCe
Confidence 999988765 567888887766788999999999999999999999999999999999999999999999999887 89
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCceEE--EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC
Q psy15212 158 LISVDNNLSRLNMISENLKRLNLKATL--ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235 (329)
Q Consensus 158 v~avD~~~~rl~~l~~n~~~~g~~v~~--~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~ 235 (329)
|+|+|+++.+++.+++|++++|+.+.+ ..+|..... .+...+.||.|++||||||+|+++++
T Consensus 265 v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~----------------~~~~~~~fD~VllDaPcSg~G~~~~~ 328 (426)
T TIGR00563 265 VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS----------------QWAENEQFDRILLDAPCSATGVIRRH 328 (426)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc----------------ccccccccCEEEEcCCCCCCcccccC
Confidence 999999999999999999999987444 556655432 11134679999999999999999999
Q ss_pred CCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC---------Ccc
Q psy15212 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------GQL 306 (329)
Q Consensus 236 p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------~~~ 306 (329)
|+++|.++++++..+..+|.++|.+|+++|||||+|||||||++++|||++|++|+++||++.+.... .++
T Consensus 329 p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 408 (426)
T TIGR00563 329 PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTPEQVRDGGLQI 408 (426)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCccccCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998754321 257
Q ss_pred cCCCCCCCCCCeEEEEEEEec
Q psy15212 307 LPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 307 ~p~~~~~~~~~gff~a~l~k~ 327 (329)
+|+. +++||||+|+|+|.
T Consensus 409 ~P~~---~~~dGff~a~l~k~ 426 (426)
T TIGR00563 409 LPHA---EEGDGFFYAKLIKK 426 (426)
T ss_pred CCCC---CCCCCeEEEEEEeC
Confidence 8987 89999999999984
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=501.77 Aligned_cols=280 Identities=22% Similarity=0.379 Sum_probs=252.7
Q ss_pred cCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEE--eCCceEEEcCC----CC
Q psy15212 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTP----IS 102 (329)
Q Consensus 29 ~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~----~~ 102 (329)
..+|.||+++|.+.||+.++++++++++++|+|.++|||++|++.+++.+.|++.|+..++ ++++++.+... ..
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~ 81 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALP 81 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCC
Confidence 4599999999999999524799999999999999999999999999999999999987765 56788888642 35
Q ss_pred CCCCcccccceEEEechhHHHHhhhc--CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 103 ISKIPKFFNGFCSIQDAAAQLAAPLL--DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 103 ~~~~~~~~~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
+..+++|..|.+|+||++||+++.+| ++++|++|||+||||||||+++|++++ +.|+|+|+++.|++.+++|++++
T Consensus 82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~ 161 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC 161 (470)
T ss_pred cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 78999999999999999999999999 899999999999999999999999986 79999999999999999999999
Q ss_pred CCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH
Q psy15212 179 NLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 179 g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
|+. +.+++.|+..+. .. ....||+||+||||||+|+++|+|+++|.|+++++..++.+|++|
T Consensus 162 G~~nv~v~~~D~~~~~----------------~~-~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 162 GVSNVALTHFDGRVFG----------------AA-LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL 224 (470)
T ss_pred CCCeEEEEeCchhhhh----------------hh-chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence 997 788999988754 11 235799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE-EecCC---------------CcccCCCCCCCCCCeEEE
Q psy15212 258 LNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI-RLNSP---------------GQLLPTVNKKQDYDGFFY 321 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~-~~~~~---------------~~~~p~~~~~~~~~gff~ 321 (329)
|.+|+++|||||+|||||||++++|||+||++||++|+++. +++.+ .+++|+. +++||||+
T Consensus 225 L~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfFi 301 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFPGAEKALTEEGFLHVFPQI---YDSEGFFV 301 (470)
T ss_pred HHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEeccccccccccccccCCCCeEEECCCC---CCCcceee
Confidence 99999999999999999999999999999999999998843 43221 1578987 89999999
Q ss_pred EEEEecC
Q psy15212 322 SLFQKRK 328 (329)
Q Consensus 322 a~l~k~~ 328 (329)
|+|+|.+
T Consensus 302 A~lrk~~ 308 (470)
T PRK11933 302 ARLRKTA 308 (470)
T ss_pred EEEEecC
Confidence 9999974
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=493.52 Aligned_cols=305 Identities=45% Similarity=0.814 Sum_probs=276.2
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.++++.+.... ..+++++||+|.||+++|.+.||+ +++++++++++++|+|+|||++|++++++.+.|
T Consensus 114 fVNaVLr~i~~~~~~~~~~~-~~~~~~~~s~P~wl~~~~~~~~~~--~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l 190 (427)
T PRK10901 114 LVNAVLRRFQREQEELLAEL-QADPVARYNHPSWLIKRLKKAYPE--QWQAILAANNQRPPMWLRVNRRHHSRDAYLALL 190 (427)
T ss_pred hHHHHHHHhhhhhhhhhhhh-hhchHhHhcCCHHHHHHHHHHhHH--HHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 79999999998755432212 246889999999999999999975 889999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK 157 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~ 157 (329)
+.+|+..++ +.++++.+..+..+..+++|++|++++||.+|++++.++++++|++|||+|||||++|++++++++ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~ 270 (427)
T PRK10901 191 AEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQ 270 (427)
T ss_pred HhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCE
Confidence 999988866 668999998766788999999999999999999999999999999999999999999999999876 79
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCC
Q psy15212 158 LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237 (329)
Q Consensus 158 v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~ 237 (329)
|+|+|+++.+++.+++|++++|+.++++.+|+..+. .+...+.||.|++|||||++|+++++|+
T Consensus 271 v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~----------------~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~ 334 (427)
T PRK10901 271 VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA----------------QWWDGQPFDRILLDAPCSATGVIRRHPD 334 (427)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch----------------hhcccCCCCEEEECCCCCcccccccCcc
Confidence 999999999999999999999988889999998753 1223467999999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC------CcccCCCC
Q psy15212 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVN 311 (329)
Q Consensus 238 ~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~------~~~~p~~~ 311 (329)
++|.++++++..+...|.++|..++++|||||+|||||||++++|||++|..++++|+++++++.. .+++|+.
T Consensus 335 ~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~- 413 (427)
T PRK10901 335 IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQLLPGE- 413 (427)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCCCceEECCCC-
Confidence 999999999999999999999999999999999999999999999999999999999999877632 2678987
Q ss_pred CCCCCCeEEEEEEEec
Q psy15212 312 KKQDYDGFFYSLFQKR 327 (329)
Q Consensus 312 ~~~~~~gff~a~l~k~ 327 (329)
+++||||+|+|+|+
T Consensus 414 --~~~dGff~a~l~k~ 427 (427)
T PRK10901 414 --EDGDGFFYALLIKR 427 (427)
T ss_pred --CCCCCeEEEEEEEC
Confidence 89999999999985
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=479.64 Aligned_cols=304 Identities=26% Similarity=0.383 Sum_probs=264.7
Q ss_pred Ceeeecchhhhcccccccc----cccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHH
Q psy15212 1 MINAILREFLRKKGEIFKS----KMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISY 76 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~----~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~ 76 (329)
|||||||+++++...+... .....++++||+|.||+++|.+.||. +++.+++++++++||+++|||+++++++++
T Consensus 117 fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~ 195 (445)
T PRK14904 117 LVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLERWIARYGE-ERTEAMLSYNNQAPLFGFRINRLKTTPEKF 195 (445)
T ss_pred chHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHHHHHHhCh-HHHHHHHHHhCCCCCceeEeCCCCCCHHHH
Confidence 8999999999975332211 11134678999999999999999997 788999999999999999999999999999
Q ss_pred HHHHHHCCCeeEEeCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-
Q psy15212 77 NKLLKKSGLETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD- 155 (329)
Q Consensus 77 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~- 155 (329)
.+.|..+|+...+....++.+... .....+.|..|.+++||++|++++.++++.+|++|||+|||||+||.+++++++
T Consensus 196 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~ 274 (445)
T PRK14904 196 LAAPADASVTFEKSGLPNFFLSKD-FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQN 274 (445)
T ss_pred HHHHHhCCCceEEcCcceEEEecc-ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 999999998876543235555432 222337999999999999999999999999999999999999999999998764
Q ss_pred -CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 156 -IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 156 -~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
++|+|+|+++.+++.+++|++++|+. ++++.+|+..+. ....||+|++||||||+|+++
T Consensus 275 ~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-------------------~~~~fD~Vl~D~Pcsg~g~~~ 335 (445)
T PRK14904 275 RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-------------------PEEQPDAILLDAPCTGTGVLG 335 (445)
T ss_pred CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-------------------cCCCCCEEEEcCCCCCcchhh
Confidence 69999999999999999999999997 889999987653 245799999999999999999
Q ss_pred cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC----------
Q psy15212 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------- 303 (329)
Q Consensus 234 ~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------- 303 (329)
++|+++|.++++++..+...|.++|.+++++|||||+|||||||++++|||+||++||++|+++..++.+
T Consensus 336 r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~l~~~~~~~ 415 (445)
T PRK14904 336 RRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPSPGSLPEPFHEV 415 (445)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988765421
Q ss_pred ------CcccCCCCCCC-CCCeEEEEEEEecC
Q psy15212 304 ------GQLLPTVNKKQ-DYDGFFYSLFQKRK 328 (329)
Q Consensus 304 ------~~~~p~~~~~~-~~~gff~a~l~k~~ 328 (329)
.+++|+. + ++||||+|+|+|..
T Consensus 416 ~~~~~~~~~~P~~---~~~~dGfF~a~l~k~~ 444 (445)
T PRK14904 416 AHPKGAILTLPGE---HEGFDGGFAQRLRKNA 444 (445)
T ss_pred cCCCCcEEECCCC---CCCCCcEEEEEEEecC
Confidence 1468875 5 78999999999974
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-62 Score=477.30 Aligned_cols=306 Identities=33% Similarity=0.523 Sum_probs=273.2
Q ss_pred Ceeeecchhhhcccc-cccccc-cCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHH
Q psy15212 1 MINAILREFLRKKGE-IFKSKM-YNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNK 78 (329)
Q Consensus 1 ~vNavlr~~~~~~~~-~~~~~~-~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~ 78 (329)
|||||||++.++... +..... ..+++++||+|.||+++|.+.||. +++.++++++++++|+|+|+|+.|++++++.+
T Consensus 117 fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~~~g~-~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~ 195 (444)
T PRK14902 117 FVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWIDQYGE-EKAEKILESLNEPPKASIRVNTLKISVEELIE 195 (444)
T ss_pred HHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHHHhCH-HHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHH
Confidence 799999999987422 111111 134788999999999999999997 78999999999999999999999999999999
Q ss_pred HHHHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-
Q psy15212 79 LLKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD- 155 (329)
Q Consensus 79 ~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~- 155 (329)
.|+++|+...+ +.|+++.++. ..+..++.|++|.+++||.+|++++.++++++|++|||+|||||++|+++++.++
T Consensus 196 ~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~ 274 (444)
T PRK14902 196 KLEEEGYEVEESLLSPEALVIEK-GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKN 274 (444)
T ss_pred HHHHcCceeEEcCCCCCeEEEeC-CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCC
Confidence 99999987765 5678888876 5688999999999999999999999999999999999999999999999999873
Q ss_pred -CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 156 -IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 156 -~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
++|+|+|+++.+++.+++|++++|+. ++++++|+.... ..+ .+.||+|++||||||+|+++
T Consensus 275 ~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~----------------~~~-~~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 275 TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH----------------EKF-AEKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc----------------chh-cccCCEEEEcCCCCCCeeec
Confidence 79999999999999999999999987 899999988753 111 26799999999999999999
Q ss_pred cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC----------
Q psy15212 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------- 303 (329)
Q Consensus 234 ~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------- 303 (329)
++|+++|.+++.++..+..+|.++|+.|+++|||||+|||||||++++|||.+|.+++++|++++.++..
T Consensus 338 ~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~ 417 (444)
T PRK14902 338 RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQHEKPDELVYE 417 (444)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988877642
Q ss_pred -----CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 -----GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 -----~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+. +++||||+|+|+|.+
T Consensus 418 ~~~~~~r~~P~~---~~~dGfF~a~l~k~~ 444 (444)
T PRK14902 418 VKDGYLQILPND---YGTDGFFIAKLRKKG 444 (444)
T ss_pred ccCCeEEECCCC---CCCCCeEEEEEEECC
Confidence 1568887 899999999999974
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=446.08 Aligned_cols=255 Identities=40% Similarity=0.644 Sum_probs=228.4
Q ss_pred HHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEe--CCce--EEEcCCCCCCCCcccccceEEEechhHHHHhhh
Q psy15212 52 ILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLA--IKLHTPISISKIPKFFNGFCSIQDAAAQLAAPL 127 (329)
Q Consensus 52 ~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~ 127 (329)
+|++++.++|.++|||++|++++++.+.|+++|+..++. .+++ +.......+..++.|++|++++||.+||+++.+
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~ 80 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALA 80 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccccccccccc
Confidence 688999999999999999999999999999999998875 4566 344556788999999999999999999999999
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
|.+++|+.|||+||||||||+++|++++ +.|+|+|++.+|+..+++|++++|+. +.++..|++...
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~----------- 149 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLD----------- 149 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHH-----------
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccc-----------
Confidence 9999999999999999999999999998 89999999999999999999999998 777778988764
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC----CCCCEEEEEcCCCCc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML----KPGGKLLFVTCSLWF 280 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L----kpgG~lvysTCS~~~ 280 (329)
.......||+||+||||||+|+++++|+++|.++++++..+..+|.++|++|++++ ||||+|||||||+++
T Consensus 150 -----~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 150 -----PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp -----HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred -----ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 11223469999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccHHHHHHHHhhCCCcEEecCC-----------------CcccCCCCCCCCCCeEEEEEEE
Q psy15212 281 EESEEQAIIFSKNHKDSIRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~ 325 (329)
+|||+||++||++|+++++++.+ .+++|+. +++||||+|+||
T Consensus 225 eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGFFiA~lr 283 (283)
T PF01189_consen 225 EENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHR---HGTDGFFIAKLR 283 (283)
T ss_dssp GGTHHHHHHHHHHSTSEEEECCESSTCEEESSGGCTGGGSEEESTTT---SSSSSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccccCCCCEEEeCCCC---CCCCCEEEEEeC
Confidence 99999999999999999887642 1578887 899999999997
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=420.74 Aligned_cols=286 Identities=26% Similarity=0.469 Sum_probs=259.3
Q ss_pred CCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEeC---CceEEE-c
Q psy15212 23 NIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG---PLAIKL-H 98 (329)
Q Consensus 23 ~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~---~~~~~~-~ 98 (329)
.+.+.+|.+-.++.+.+.+.++- .++.+++++...+.|+++|.||+|+-+-++...|...|+-..+.. .-++.+ .
T Consensus 129 ~~~~~~y~y~~~l~~~~~e~~~~-~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~ 207 (460)
T KOG1122|consen 129 KDGAHYYAYGVFLAEKLMELFPL-VEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFD 207 (460)
T ss_pred hcccceechHHHHHHHhcccccH-HHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEec
Confidence 46788999999999999999985 788899999999999999999999999899999999998776643 456665 4
Q ss_pred CCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHH
Q psy15212 99 TPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 99 ~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~ 176 (329)
+..++..++.|..|++.+|+.+|.+++++|+|+||++||||||+|||||+|+|.+|+ |.|+|+|.+..|++.+++|+.
T Consensus 208 s~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~ 287 (460)
T KOG1122|consen 208 SVVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLH 287 (460)
T ss_pred CccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred HcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH
Q psy15212 177 RLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255 (329)
Q Consensus 177 ~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 255 (329)
++|+. ..+.+.|...++. ..+.. +||+||+||||||+|++.|.+.++|.++..++.++..+|+
T Consensus 288 rlGv~ntiv~n~D~~ef~~---------------~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr 351 (460)
T KOG1122|consen 288 RLGVTNTIVSNYDGREFPE---------------KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQR 351 (460)
T ss_pred HhCCCceEEEccCcccccc---------------cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHH
Confidence 99998 5677889887641 11233 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC------C---------------cccCCCCCCC
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------G---------------QLLPTVNKKQ 314 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~------~---------------~~~p~~~~~~ 314 (329)
++|..|.+++++||+|||||||+.++|||+||+++|+++|++++.|.. | ++.|+. |
T Consensus 352 ~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G~~~~~~~~psl~~~~r~yPh~---h 428 (460)
T KOG1122|consen 352 ELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEGRFRGGRFHPSLKLTRRFYPHV---H 428 (460)
T ss_pred HHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCCCCcccCcccCcchhheeeecCcc---c
Confidence 999999999999999999999999999999999999999999998752 1 467887 9
Q ss_pred CCCeEEEEEEEecC
Q psy15212 315 DYDGFFYSLFQKRK 328 (329)
Q Consensus 315 ~~~gff~a~l~k~~ 328 (329)
.+||||+|+|+|.+
T Consensus 429 nmdgffvaKl~k~s 442 (460)
T KOG1122|consen 429 NMDGFFVAKLKKAS 442 (460)
T ss_pred CCchHHHHHHHhhc
Confidence 99999999999864
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=403.57 Aligned_cols=242 Identities=26% Similarity=0.434 Sum_probs=218.0
Q ss_pred EEEcCCCCCHHHHHHHHHHCCCeeEEeC-CceEEEcC-CCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecC
Q psy15212 64 LRINQRKTTLISYNKLLKKSGLETTIIG-PLAIKLHT-PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACS 141 (329)
Q Consensus 64 ~RvN~~k~~~~~~~~~l~~~g~~~~~~~-~~~~~~~~-~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlca 141 (329)
+|||++|++++++.+.|++.|+..+++. +.++.+.. ...+..+++|.+|++++||.+|++++.++++++|++|||+||
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~a 80 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWCEEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMAA 80 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecCCCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEECC
Confidence 6999999999999999999999887764 35565653 446889999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCC
Q psy15212 142 APGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFD 218 (329)
Q Consensus 142 g~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 218 (329)
|||+||++++++++ +.|+|+|+++.+++.+++|++++|+. +.++..|+..+. ...+.||
T Consensus 81 g~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~------------------~~~~~fD 142 (264)
T TIGR00446 81 APGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG------------------AAVPKFD 142 (264)
T ss_pred CchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh------------------hhccCCC
Confidence 99999999999875 79999999999999999999999986 889999987654 1234699
Q ss_pred EEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE
Q psy15212 219 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 219 ~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
+||+||||||+|+++++|+.+|.++++++..+...|.++|++|+++|||||+|||||||++++|||+||++|+++|+++.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred EecCC-----------------CcccCCCCCCCCCCeEEEEEEEe
Q psy15212 299 RLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 299 ~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~k 326 (329)
..+.. .+++|+. +++||||+|+|+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfF~a~l~k 264 (264)
T TIGR00446 223 EELPKGDEFFGANKGKEEVKGALRVFPQI---YDCEGFFVAKLRK 264 (264)
T ss_pred EeccCCcccccccccccccCCeEEECCCC---CCCCcEEEEEEEC
Confidence 55211 1467887 8999999999987
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=310.14 Aligned_cols=252 Identities=27% Similarity=0.379 Sum_probs=193.7
Q ss_pred HHHHHhCC-ChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHC-----------C--Cee---EEeCCceEEEcC
Q psy15212 37 NQVKITYP-NFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKS-----------G--LET---TIIGPLAIKLHT 99 (329)
Q Consensus 37 ~~~~~~~~-~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~-----------g--~~~---~~~~~~~~~~~~ 99 (329)
.+..+.|. + +++.++.+.+..+.|..+|+.......+++...+++. | ++. .++.|+++.+..
T Consensus 30 ~~~l~~f~~~-~e~~~~~~~ir~~Lps~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~ 108 (375)
T KOG2198|consen 30 YKALDHFDKE-DEFGDFWETIRKPLPSTFRYTALVNNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEK 108 (375)
T ss_pred HHHHhcCcch-HHHHHHHHHHHhccchhhhHHHhccchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhh
Confidence 34444554 4 6899999999999999999987766555544333222 2 221 234444444322
Q ss_pred ---------CCCCCCCccc-----ccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-----CEEEE
Q psy15212 100 ---------PISISKIPKF-----FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-----IKLIS 160 (329)
Q Consensus 100 ---------~~~~~~~~~~-----~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~a 160 (329)
..++.+++.| .-|.++.||.+||+++.+|+++||++|||||||||+||+++.+... +.|+|
T Consensus 109 ~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vva 188 (375)
T KOG2198|consen 109 DVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVA 188 (375)
T ss_pred cCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEe
Confidence 2223344444 3599999999999999999999999999999999999999988654 49999
Q ss_pred EeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCc
Q psy15212 161 VDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP 239 (329)
Q Consensus 161 vD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~ 239 (329)
+|.+..|+..+.+.+++..-. ..+...|+..++ ..++. + .+ -.....||+||||+||||+|+++++|++.
T Consensus 189 ND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p--~~~~~-~--~~----~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~ 259 (375)
T KOG2198|consen 189 NDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP--NIYLK-D--GN----DKEQLKFDRVLVDVPCSGDGTLRKNPNIW 259 (375)
T ss_pred cccCHHHHHHHHHHHhccCCcceeeecccceecc--ccccc-c--Cc----hhhhhhcceeEEecccCCCcccccCchHh
Confidence 999999999999999776554 567777777655 11110 0 00 01336899999999999999999999986
Q ss_pred cc-CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE
Q psy15212 240 WL-RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 240 ~~-~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
-. |..++...|..+|.+||.+++++||+||+|||||||++|-|||.||+..|+...+..
T Consensus 260 ~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~ 319 (375)
T KOG2198|consen 260 KEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAV 319 (375)
T ss_pred hhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcc
Confidence 43 777777889999999999999999999999999999999999999999999886543
|
|
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=276.80 Aligned_cols=252 Identities=28% Similarity=0.356 Sum_probs=204.1
Q ss_pred hCCCCCeeEEEcCCCCCHHHHHHHHHHCCCee-----------EEeCCceEEEcCCCCCCCCcccccceEEEechhHHHH
Q psy15212 56 GHKKPPLTLRINQRKTTLISYNKLLKKSGLET-----------TIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLA 124 (329)
Q Consensus 56 ~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~ 124 (329)
.+.+.|+|+|+||++.+.++.+..|..+++.. .+..+..+.++.+..+..++.|+.|++++||.+|+++
T Consensus 126 ~~~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclp 205 (413)
T KOG2360|consen 126 MKIPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLP 205 (413)
T ss_pred CCCCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcch
Confidence 33589999999999999998888887776651 2222333444445567789999999999999999999
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
+++|+|.+|..|+|+||+||.||+|+|..+. ++|+|+|.+..|.+.+++.+...|++ +..+.+|+....
T Consensus 206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~-------- 277 (413)
T KOG2360|consen 206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTA-------- 277 (413)
T ss_pred hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCC--------
Confidence 9999999999999999999999999999876 89999999999999999999999998 777799988742
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCc--ccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP--WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~--~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
++. .-+....||+||+|||+|+..+.-... -..+++++..+...|..++++|+.+ ..=-+++|||||++
T Consensus 278 ---~~~-----~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~f-p~~k~vvystcs~~ 348 (413)
T KOG2360|consen 278 ---TPE-----KFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTF-PNLKRLVYSTCSLH 348 (413)
T ss_pred ---Ccc-----cccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcC-Cchhheeeecchhh
Confidence 111 124678999999999999987654433 2345688999999999999999883 33458999999999
Q ss_pred ccccHHHHHHHHhhCCCcEEecC----C-----C-----------cccCCCCCCCCCCeEEEEEEEec
Q psy15212 280 FEESEEQAIIFSKNHKDSIRLNS----P-----G-----------QLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 280 ~~Ene~vv~~~l~~~~~~~~~~~----~-----~-----------~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.+|||+||+..|...|++..+.. | + +-.|.. ..++|||+|.+.|.
T Consensus 349 reene~vv~d~l~~~p~~~~l~~kK~~p~w~~rg~~~~~~~e~~lr~~p~~---~~~~gffva~fer~ 413 (413)
T KOG2360|consen 349 REENEQVVQEVLQQNPDAKRLAPKKVLPAWPHRGLSTFSGAEHCLRASPKS---TLTIGFFVALFERV 413 (413)
T ss_pred hhhhhHHHHHHHhhChhHhhhchhhcchhhhhcCCccccccccceecccCC---CCcceEEEEEeecC
Confidence 99999999999998887654432 1 0 223443 89999999988763
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=159.09 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=121.6
Q ss_pred CCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--
Q psy15212 104 SKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-- 181 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-- 181 (329)
.-..+++.|+|..|......+..+. +|.+|||+|||+|+.+++++.....+|+++|+|+.+++.+++|++.+|+.
T Consensus 195 dl~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 195 DIQGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ecccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 3456788999999988777776653 58899999999999998877532259999999999999999999999973
Q ss_pred -eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH
Q psy15212 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260 (329)
Q Consensus 182 -v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~ 260 (329)
++++.+|+.+.. ..+ . ...++||.|++|||+... +...+........+++..
T Consensus 272 ~v~~i~~D~~~~l-~~~------------~-~~~~~fDlVilDPP~f~~-------------~k~~l~~~~~~y~~l~~~ 324 (396)
T PRK15128 272 KAEFVRDDVFKLL-RTY------------R-DRGEKFDVIVMDPPKFVE-------------NKSQLMGACRGYKDINML 324 (396)
T ss_pred cEEEEEccHHHHH-HHH------------H-hcCCCCCEEEECCCCCCC-------------ChHHHHHHHHHHHHHHHH
Confidence 789999987652 100 0 023579999999998632 122333444456788899
Q ss_pred HHhcCCCCCEEEEEcCCCCcc--ccHHHHHHHHhh-CCCcEEe
Q psy15212 261 LWKMLKPGGKLLFVTCSLWFE--ESEEQAIIFSKN-HKDSIRL 300 (329)
Q Consensus 261 a~~~LkpgG~lvysTCS~~~~--Ene~vv~~~l~~-~~~~~~~ 300 (329)
|.++|+|||.|+++|||-+-. +=.+.+.....+ ...++.+
T Consensus 325 a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 325 AIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred HHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 999999999999999995543 333444444333 2344444
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=152.98 Aligned_cols=164 Identities=23% Similarity=0.261 Sum_probs=127.0
Q ss_pred CcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc---
Q psy15212 106 IPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--- 181 (329)
Q Consensus 106 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--- 181 (329)
....+.|.|..|..+...+...+. |.+|||+||.+|+.++++|. .| .+|++||+|...++.+++|++-+|+.
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 345688999999999988887764 99999999999999999996 45 59999999999999999999999985
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
+.++++|+.++- ++.. -.+.+||+|++|||-.+ +++....+..+-..+++..+
T Consensus 270 ~~~i~~Dvf~~l-~~~~-------------~~g~~fDlIilDPPsF~-------------r~k~~~~~~~rdy~~l~~~~ 322 (393)
T COG1092 270 HRFIVGDVFKWL-RKAE-------------RRGEKFDLIILDPPSFA-------------RSKKQEFSAQRDYKDLNDLA 322 (393)
T ss_pred eeeehhhHHHHH-HHHH-------------hcCCcccEEEECCcccc-------------cCcccchhHHHHHHHHHHHH
Confidence 689999998763 1111 13469999999999442 23333455666678899999
Q ss_pred HhcCCCCCEEEEEcCCCCccccH---HHHHHHHhhCCCcEEe
Q psy15212 262 WKMLKPGGKLLFVTCSLWFEESE---EQAIIFSKNHKDSIRL 300 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~~~Ene---~vv~~~l~~~~~~~~~ 300 (329)
.++|+|||+++.||||-+-...+ .+.+.+.......+.+
T Consensus 323 ~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 323 LRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred HHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999997766553 2333333333444444
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=138.51 Aligned_cols=157 Identities=18% Similarity=0.152 Sum_probs=111.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.+++|++++|+. ++++.+|+....
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------------- 185 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------------- 185 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-------------
Confidence 34567999999999999999998776 79999999999999999999999984 889999976432
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHH----HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
.+.+||.|++||||...+.+...+.. +...+... ..-...++.++..+.++|+|||++++.+.. ..
T Consensus 186 ------~~~~fD~Iv~NPPy~~~~~~~~l~~~-~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~---~~ 255 (284)
T TIGR03533 186 ------PGRKYDLIVSNPPYVDAEDMADLPAE-YHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN---SM 255 (284)
T ss_pred ------CCCCccEEEECCCCCCccchhhCCHh-hhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---CH
Confidence 23579999999999877655432211 11111111 112356778999999999999999876442 22
Q ss_pred cHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEE
Q psy15212 283 SEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYS 322 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a 322 (329)
+.+...+..+ ++..... . +..+|||+-
T Consensus 256 --~~v~~~~~~~-~~~~~~~-------~---~~~~~~~~~ 282 (284)
T TIGR03533 256 --EALEEAYPDV-PFTWLEF-------E---NGGDGVFLL 282 (284)
T ss_pred --HHHHHHHHhC-CCceeee-------c---CCCcEEEEE
Confidence 3455555554 2332221 1 688899873
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=154.47 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=120.5
Q ss_pred CCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHH
Q psy15212 91 GPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNM 170 (329)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~ 170 (329)
.++++.+. +.-....+.|.|..|.....++..+. +|.+|||+|||+|+++++++.....+|+++|+|+.+++.
T Consensus 504 ~e~g~~f~----v~~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~ 576 (702)
T PRK11783 504 TEYGAKLL----VNLTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW 576 (702)
T ss_pred EECCEEEE----EEcCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 34555553 33345677899999988887777654 478999999999999999997532589999999999999
Q ss_pred HHHHHHHcCCc---eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHH
Q psy15212 171 ISENLKRLNLK---ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI 247 (329)
Q Consensus 171 l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~ 247 (329)
+++|++.+|+. ++++++|+.++. .. ..++||.|++|||+.+.+- ...+.
T Consensus 577 a~~N~~~ng~~~~~v~~i~~D~~~~l----------------~~-~~~~fDlIilDPP~f~~~~-----------~~~~~ 628 (702)
T PRK11783 577 AERNFALNGLSGRQHRLIQADCLAWL----------------KE-AREQFDLIFIDPPTFSNSK-----------RMEDS 628 (702)
T ss_pred HHHHHHHhCCCccceEEEEccHHHHH----------------HH-cCCCcCEEEECCCCCCCCC-----------ccchh
Confidence 99999999884 789999987642 11 1458999999999875421 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 248 KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 248 ~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
....+.+.+++..+.++|+|||.+++++|+-+....
T Consensus 629 ~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 629 FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 334455778899999999999999999998665543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=125.87 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=90.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
|.+|||+|||+|..+.++++....+++++|+++..++.++.|+...++. ++++++|+.... .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----------------~ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP----------------E 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH----------------H
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch----------------h
Confidence 6799999999999999999886579999999999999999999999884 899999988764 2
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
....++||.|++|||+........ ........+++++.++|+|||.+++.+|
T Consensus 65 ~~~~~~~D~Iv~npP~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 65 PLPDGKFDLIVTNPPYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCceeEEEEECCCCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 235689999999999974321110 1111456789999999999999999876
|
... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=130.14 Aligned_cols=156 Identities=20% Similarity=0.138 Sum_probs=111.8
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
...+.++...+...++.+|||+|||+|..+..+++... +|+++|+++.+++.+++|++.+++.++++.+|.....
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---- 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----
Confidence 34455666666666778999999999999999998655 9999999999999999999998888888888876532
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCcccc-ccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSG-VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G-~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.++||.|+++||+.... ..+.++...+.+.... .-...+.++|+.+.++|+|||++++.++
T Consensus 80 ----------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 80 ----------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK--DGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred ----------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCC--chHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 24899999999985332 1111111111111000 1123467899999999999999999887
Q ss_pred CCCccccHHHHHHHHhhCCCcEEe
Q psy15212 277 SLWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
+.. +...+..++++. ++...
T Consensus 142 ~~~---~~~~~~~~l~~~-gf~~~ 161 (179)
T TIGR00537 142 SLN---GEPDTFDKLDER-GFRYE 161 (179)
T ss_pred ccC---ChHHHHHHHHhC-CCeEE
Confidence 644 355666777765 45443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=134.27 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=115.1
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
.++|.+.+..+....+|||+|||.|..++.+|++.. .+|++||+++.+.+.+++|++.+++. ++++++|+..+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~--- 108 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL--- 108 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh---
Confidence 377888888877788999999999999999999866 89999999999999999999999886 899999998875
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
......+||.|+||||+...|.- .+++-.... ........-.++++.|.++||+||++.+.
T Consensus 109 -------------~~~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~~~---Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-- 169 (248)
T COG4123 109 -------------KALVFASFDLIICNPPYFKQGSR-LNENPLRAI---ARHEITLDLEDLIRAAAKLLKPGGRLAFV-- 169 (248)
T ss_pred -------------hcccccccCEEEeCCCCCCCccc-cCcChhhhh---hhhhhcCCHHHHHHHHHHHccCCCEEEEE--
Confidence 22233579999999999877765 222211000 00001112356899999999999999874
Q ss_pred CCCccccHHHHHHHHhhC
Q psy15212 277 SLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~ 294 (329)
++.|.-.-+-..+.++
T Consensus 170 --~r~erl~ei~~~l~~~ 185 (248)
T COG4123 170 --HRPERLAEIIELLKSY 185 (248)
T ss_pred --ecHHHHHHHHHHHHhc
Confidence 7777666666666664
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-16 Score=132.98 Aligned_cols=123 Identities=25% Similarity=0.319 Sum_probs=98.5
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLK 195 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~ 195 (329)
|+++.+....+...++.+|||+|||+|..++.+++..+ .+|+++|+++..++.+++|++.+++. ++++..|.....
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-- 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-- 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--
Confidence 67888888877666788999999999999999999877 48999999999999999999999998 999999987643
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..++||.|++|||.... . ......+.++++.|.++|+|||.+++..
T Consensus 95 -----------------~~~~fD~Iv~NPP~~~~--------------~---~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 95 -----------------PDGKFDLIVSNPPFHAG--------------G---DDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp -----------------CTTCEEEEEE---SBTT--------------S---HCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------cccceeEEEEccchhcc--------------c---ccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 35799999999994311 1 1122346789999999999999886643
Q ss_pred C
Q psy15212 276 C 276 (329)
Q Consensus 276 C 276 (329)
-
T Consensus 141 ~ 141 (170)
T PF05175_consen 141 N 141 (170)
T ss_dssp E
T ss_pred e
Confidence 3
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=132.98 Aligned_cols=143 Identities=21% Similarity=0.291 Sum_probs=103.9
Q ss_pred ceEEEechhHHHHhhhc---CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLL---DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l---~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D 188 (329)
|.+..|..+ .+....+ .+.++++|||+|||+|..+..++.....+|+++|+++.+++.+++|++..++.+.++.+|
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d 92 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD 92 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc
Confidence 444555544 3343333 467889999999999999999987533599999999999999999999988888888888
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc---cccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT---GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 265 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs---g~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L 265 (329)
+.... ..+.||.|++|||+. ..+...+.|...|....+. ...+..+++.+.++|
T Consensus 93 ~~~~~-------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~L 149 (223)
T PRK14967 93 WARAV-------------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG----RAVLDRLCDAAPALL 149 (223)
T ss_pred hhhhc-------------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH----HHHHHHHHHHHHHhc
Confidence 76532 346899999999864 3333344444444322211 234577999999999
Q ss_pred CCCCEEEEEcCCC
Q psy15212 266 KPGGKLLFVTCSL 278 (329)
Q Consensus 266 kpgG~lvysTCS~ 278 (329)
|+||++++.+.+.
T Consensus 150 k~gG~l~~~~~~~ 162 (223)
T PRK14967 150 APGGSLLLVQSEL 162 (223)
T ss_pred CCCcEEEEEEecc
Confidence 9999999865444
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=136.84 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=103.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+.+|||+|||+|.+++.+++..+ .+|+++|+|+.+++.+++|++.++. +++.+|+.+.. ..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--~~~~~D~~~~l----------------~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--TVHEGDLYDAL----------------PT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--EEEEeechhhc----------------ch
Confidence 45899999999999999998766 6999999999999999999998874 67888876532 00
Q ss_pred cCCCCCCEEEEccCCcccccccc-CCCCcccCChhHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRR-NPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
...++||.|++||||..++.+.+ .|+.++......+ ......++++++.+.++|+|||++++.+.. ...++ +
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~-v 224 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPL-A 224 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHH-H
Confidence 01257999999999998887765 4444432211111 134567889999999999999999998653 33334 4
Q ss_pred HHHHhhC
Q psy15212 288 IIFSKNH 294 (329)
Q Consensus 288 ~~~l~~~ 294 (329)
...++++
T Consensus 225 ~~~l~~~ 231 (251)
T TIGR03704 225 VEAFARA 231 (251)
T ss_pred HHHHHHC
Confidence 4455544
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=142.99 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=99.2
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
+.+.++++|+.|||+|||+|+.+..++. .+..++|+|+++.+++.++.|++++|+. +.++.+|+.+++
T Consensus 175 ~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~---------- 243 (329)
T TIGR01177 175 VNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP---------- 243 (329)
T ss_pred HHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC----------
Confidence 3445678999999999999999988765 4679999999999999999999999987 789999998865
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
...+.||.|++||||....... ......++.++|+.+.+.|+|||++++.+++-
T Consensus 244 --------~~~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------LSSESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------cccCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 2346899999999997422111 01234567889999999999999999998764
|
This family is found exclusively in the Archaea. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.7e-16 Score=141.56 Aligned_cols=146 Identities=27% Similarity=0.332 Sum_probs=106.8
Q ss_pred CCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 103 ISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 103 ~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+.-....+.|.|..|.....++.... .|.+|||++|.+|+++++++. .| .+|++||.|...++.+++|++.+|++
T Consensus 97 v~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 97 VDLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp EESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EEcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 34445678999999999999887764 488999999999999999885 45 69999999999999999999999975
Q ss_pred ---eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 182 ---ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 182 ---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
++++.+|+.+.- ..+ ...++||+|++|||..+-|. + .+ .+-..+++
T Consensus 173 ~~~~~~~~~Dvf~~l-~~~--------------~~~~~fD~IIlDPPsF~k~~--------~-----~~---~~~y~~L~ 221 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFL-KRL--------------KKGGRFDLIILDPPSFAKSK--------F-----DL---ERDYKKLL 221 (286)
T ss_dssp CTCEEEEES-HHHHH-HHH--------------HHTT-EEEEEE--SSEESST--------C-----EH---HHHHHHHH
T ss_pred ccceEEEecCHHHHH-HHH--------------hcCCCCCEEEECCCCCCCCH--------H-----HH---HHHHHHHH
Confidence 789999987642 111 12468999999999664321 1 11 23466899
Q ss_pred HHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 259 NNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
..++++|+|||.|+.+|||-+-..+
T Consensus 222 ~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 222 RRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp HHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred HHHHHhcCCCCEEEEEcCCcccCHH
Confidence 9999999999999999999776654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=118.65 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=85.0
Q ss_pred CCCeEEeecCCCchHHHHHHHh-CCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCc-cccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDI-SKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~-~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~-~~~~~~~~~~~~~~~~~~ 207 (329)
||.+|||+|||+|..+..++++ .+.+|+|+|+|+.+++.+++++.+.+.. ++++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------------- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------------- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--------------
Confidence 6889999999999999999985 3479999999999999999999766664 89999999 2222
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.||.|+++. .+.... ... ..+.++|+++.+.|+|||++++++|
T Consensus 67 -----~~~~~D~v~~~~-~~~~~~----------------~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 -----FLEPFDLVICSG-FTLHFL----------------LPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -----TSSCEEEEEECS-GSGGGC----------------CHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -----cCCCCCEEEECC-Cccccc----------------cch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 246799999765 211101 111 4466789999999999999999998
|
... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=134.60 Aligned_cols=224 Identities=17% Similarity=0.157 Sum_probs=138.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCC-CHHHH---HHHHHH--CCCeeE------EeCCceEEEcCC
Q psy15212 33 IWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKT-TLISY---NKLLKK--SGLETT------IIGPLAIKLHTP 100 (329)
Q Consensus 33 ~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~-~~~~~---~~~l~~--~g~~~~------~~~~~~~~~~~~ 100 (329)
.|..++|.+ +. .+++-++.......+.+++.|..+. +.+.. .+.+.+ .|.+.. ++....+.+.
T Consensus 9 ~~~~~~l~~--~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~-- 83 (275)
T PRK09328 9 REATARLAS--PR-LDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVS-- 83 (275)
T ss_pred HHHHHHHhC--cH-HHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEEC--
Confidence 566666765 54 5677788888888888898887664 44332 222222 222211 0000011111
Q ss_pred CCCCCCcccccceEEEechhHHHHhhh---cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHH
Q psy15212 101 ISISKIPKFFNGFCSIQDAAAQLAAPL---LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 101 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~---l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~ 176 (329)
.+.+.....+..++-.+ +...++.+|||+|||+|..+..++...+ .+++++|+++.+++.+++|++
T Consensus 84 ----------~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 84 ----------PGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ----------CCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 11122222222222222 2355678999999999999999998875 799999999999999999998
Q ss_pred HcCC-ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc-CCCCcccCChhHH---HHHH
Q psy15212 177 RLNL-KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR-NPDIPWLRRKNDI---KKLS 251 (329)
Q Consensus 177 ~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~~~~~~~~~---~~l~ 251 (329)
.... .+.++.+|+.... ..++||+|++||||...+.+.. .+++++......+ ....
T Consensus 154 ~~~~~~i~~~~~d~~~~~-------------------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~ 214 (275)
T PRK09328 154 HGLGARVEFLQGDWFEPL-------------------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGL 214 (275)
T ss_pred hCCCCcEEEEEccccCcC-------------------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHH
Confidence 3222 3889999885432 2468999999999988776542 2333211110011 1234
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 252 ~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
..+..+++.+.++|+|||++++.+. .... +.+..++...
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~g---~~~~-~~~~~~l~~~ 253 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEIG---YDQG-EAVRALLAAA 253 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEEC---chHH-HHHHHHHHhC
Confidence 5677899999999999999998542 2222 3455566554
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=128.44 Aligned_cols=121 Identities=23% Similarity=0.426 Sum_probs=97.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~ 198 (329)
....+..+.+.+|++|||+|||+|-.+..+++..+ ++|+++|+|+.||+.+++.+...|.. ++++++|+.+++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP----- 114 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP----- 114 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-----
Confidence 44455566666999999999999999999999887 89999999999999999999998877 999999999987
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
+++++||.|.+ +.|. ++.. ...+.|+++.|.|||||+++.- .+
T Consensus 115 -------------f~D~sFD~vt~-----~fgl----------------rnv~-d~~~aL~E~~RVlKpgG~~~vl--e~ 157 (238)
T COG2226 115 -------------FPDNSFDAVTI-----SFGL----------------RNVT-DIDKALKEMYRVLKPGGRLLVL--EF 157 (238)
T ss_pred -------------CCCCccCEEEe-----eehh----------------hcCC-CHHHHHHHHHHhhcCCeEEEEE--Ec
Confidence 57899999985 2222 1111 1345799999999999987753 44
Q ss_pred Ccccc
Q psy15212 279 WFEES 283 (329)
Q Consensus 279 ~~~En 283 (329)
++-++
T Consensus 158 ~~p~~ 162 (238)
T COG2226 158 SKPDN 162 (238)
T ss_pred CCCCc
Confidence 44445
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=134.63 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=103.0
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILS-DISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~ 197 (329)
-|...+.+..+++|+.|||.+||+||+...+. ++|++++|+|++..|++.++.|++.+++. ..+... |+++++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---- 259 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---- 259 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC----
Confidence 35666777789999999999999999988776 57889999999999999999999999987 555555 999886
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.+..||.|++|||+.-+-. .....+.++..++|+.+.+.||+||++|+.+-
T Consensus 260 --------------l~~~~vdaIatDPPYGrst~-------------~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 --------------LRDNSVDAIATDPPYGRSTK-------------IKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred --------------CCCCccceEEecCCCCcccc-------------cccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 34457999999999862211 12223667789999999999999999999865
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=115.95 Aligned_cols=140 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred cccceEEEechhHHHHhhh--cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEe
Q psy15212 109 FFNGFCSIQDAAAQLAAPL--LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLIL 186 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~--l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~ 186 (329)
+.+-+.+.-+.++.++..+ .+.-.|..|+|+|||+|..++.++-+...+|+|+|++++.++.+++|..+++..+.++.
T Consensus 20 ~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~ 99 (198)
T COG2263 20 GLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVV 99 (198)
T ss_pred cceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEE
Confidence 3344444455566555444 34556778999999999999998865548999999999999999999999777799999
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 266 (329)
+|++++. ..||.|+.||| .|..++|+| +.+|..|++..
T Consensus 100 ~dv~~~~---------------------~~~dtvimNPP---FG~~~rhaD-----------------r~Fl~~Ale~s- 137 (198)
T COG2263 100 ADVSDFR---------------------GKFDTVIMNPP---FGSQRRHAD-----------------RPFLLKALEIS- 137 (198)
T ss_pred cchhhcC---------------------CccceEEECCC---CccccccCC-----------------HHHHHHHHHhh-
Confidence 9999875 67999999999 566677776 35678888774
Q ss_pred CCCEEEEEcCCCCccccHHHHHHHHhhCCC
Q psy15212 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 267 pgG~lvysTCS~~~~Ene~vv~~~l~~~~~ 296 (329)
..||| +|..-+.+.++++...+.+
T Consensus 138 ---~vVYs---iH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 138 ---DVVYS---IHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred ---heEEE---eeccccHHHHHHHHHhcCC
Confidence 68885 8888899999999888753
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=115.33 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=104.6
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~ 197 (329)
-..+....|.+++|++++|+|||+|+.++.+|...+ ++|+|+|.++++++.+++|++++|++ ++++.+|+-+.-
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L---- 97 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL---- 97 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh----
Confidence 345556678899999999999999999999995444 89999999999999999999999997 899999987653
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ....||.|++. |.|. ...+|+.++..|||||+||.-.-+
T Consensus 98 ------------~--~~~~~daiFIG----Gg~~----------------------i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 98 ------------P--DLPSPDAIFIG----GGGN----------------------IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ------------c--CCCCCCEEEEC----CCCC----------------------HHHHHHHHHHHcCcCCeEEEEeec
Confidence 1 11279999973 2222 356899999999999999975443
Q ss_pred CCccccHHHHHHHHhhCCC
Q psy15212 278 LWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~ 296 (329)
.||+...-..++++..
T Consensus 138 ---lE~~~~a~~~~~~~g~ 153 (187)
T COG2242 138 ---LETLAKALEALEQLGG 153 (187)
T ss_pred ---HHHHHHHHHHHHHcCC
Confidence 6778877777777744
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=128.30 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=92.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.+++|++++++. ++++++|+.+..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----------------- 197 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----------------- 197 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-----------------
Confidence 6899999999999999998776 79999999999999999999999874 889999976432
Q ss_pred ccCCCCCCEEEEccCCcccccccc-------CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRR-------NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~-------~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..++||.|++||||.+.+.+.. .|...+.-.. .-....+.+++.+.++|+|||++++.
T Consensus 198 --~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~----dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 198 --PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGD----DGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred --CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCC----chHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2357999999999988765432 2221111111 11245678999999999999999875
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=122.30 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=89.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~ 197 (329)
......++++++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|++++|+. ++++.+|+....
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~---- 141 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW---- 141 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC----
Confidence 34555677889999999999999999999998865 67999999999999999999999986 899999987642
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....||+|++++++.. +.+...+.|+|||+|+...
T Consensus 142 --------------~~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 --------------EPLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred --------------cccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEEE
Confidence 12358999999987541 2334567799999999763
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-13 Score=115.50 Aligned_cols=155 Identities=21% Similarity=0.164 Sum_probs=106.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~ 197 (329)
+.+....+...++.+|||+|||+|..+..++.. +.+|+++|+++.+++.+++++...++. +.++.+|..+..
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----
Confidence 455555555678889999999999999999987 679999999999999999999988875 778888876532
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.+..||.|++|||+...+-..+..+ .|................+++.+.++|||||.+++..++
T Consensus 87 ---------------~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 87 ---------------RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ---------------cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 2347999999999864332111100 000000000011234567899999999999999988777
Q ss_pred CCccccHHHHHHHHhhCCCcEEe
Q psy15212 278 LWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
+... +.+..++++. +++..
T Consensus 151 ~~~~---~~l~~~~~~~-g~~~~ 169 (188)
T PRK14968 151 LTGE---DEVLEYLEKL-GFEAE 169 (188)
T ss_pred cCCH---HHHHHHHHHC-CCeee
Confidence 5432 3345566655 45433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=126.91 Aligned_cols=129 Identities=26% Similarity=0.389 Sum_probs=87.5
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYI 199 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~ 199 (329)
.+...+.+++|++|||+|||+|-.+..+++..+ ++|+++|+|+.+++.+++++++.+.. ++++++|+.+++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp------ 111 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP------ 111 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--------
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc------
Confidence 445556788999999999999999999998765 79999999999999999999998875 999999999987
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.+++||.|.+ +.|. +.-|+ +.+.|+++.+.|||||+++.... +
T Consensus 112 ------------~~d~sfD~v~~-----~fgl-rn~~d----------------~~~~l~E~~RVLkPGG~l~ile~--~ 155 (233)
T PF01209_consen 112 ------------FPDNSFDAVTC-----SFGL-RNFPD----------------RERALREMYRVLKPGGRLVILEF--S 155 (233)
T ss_dssp ------------S-TT-EEEEEE-----ES-G-GG-SS----------------HHHHHHHHHHHEEEEEEEEEEEE--E
T ss_pred ------------CCCCceeEEEH-----HhhH-HhhCC----------------HHHHHHHHHHHcCCCeEEEEeec--c
Confidence 46789999984 2332 22222 34579999999999999987543 3
Q ss_pred ccccHHHHHHHHhhC
Q psy15212 280 FEESEEQAIIFSKNH 294 (329)
Q Consensus 280 ~~Ene~vv~~~l~~~ 294 (329)
..+|. .+..+..-+
T Consensus 156 ~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 156 KPRNP-LLRALYKFY 169 (233)
T ss_dssp B-SSH-HHHHHHHH-
T ss_pred CCCCc-hhhceeeee
Confidence 44453 455555544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.7e-13 Score=127.95 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=118.1
Q ss_pred EechhHHHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 116 IQDAAAQLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
....+..++..++. +.++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.+++|+++++.+++++.+|+....
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 33444455554443 45667999999999999999987655 79999999999999999999999888899999986532
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCC-CCcccCChhH----HHHHHHHHHHHHHHHHhcCCCC
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP-DIPWLRRKND----IKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p-~~~~~~~~~~----~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
.....+||.|++|||+...+-....+ +.++ .+.. ...-....+++++.+.+.|+||
T Consensus 314 -----------------l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~--EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 314 -----------------MPSEGKWDIIVSNPPYIENGDKHLLQGDLRF--EPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred -----------------cccCCCccEEEECCCCCCcchhhhcchhhhc--CHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 01235799999999997665432221 1111 1100 0112234678999999999999
Q ss_pred CEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 269 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 269 G~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
|.+++.. .. ...+.+..++++. ++..+. +.++. .+.+=|.+++..|
T Consensus 375 G~lilEi---G~-~Q~e~V~~ll~~~-Gf~~v~----v~kDl---~G~dR~v~~~~~~ 420 (423)
T PRK14966 375 GFLLLEH---GF-DQGAAVRGVLAEN-GFSGVE----TLPDL---AGLDRVTLGKYMK 420 (423)
T ss_pred cEEEEEE---Cc-cHHHHHHHHHHHC-CCcEEE----EEEcC---CCCcEEEEEEEhh
Confidence 9987642 23 3334555566554 343322 23443 4556666655433
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=129.78 Aligned_cols=129 Identities=20% Similarity=0.228 Sum_probs=102.3
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
.|.+|.+....+......+|||+|||+|..+..++++.+ .+|+++|+|+.+++.+++|++++++..+++..|....
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--- 257 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--- 257 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---
Confidence 466777777777655566999999999999999998876 6999999999999999999999998877787886542
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.||.|++|||.- .|. ......-.++++.+.+.|||||.|++.+
T Consensus 258 -----------------~~~~fDlIvsNPPFH-~g~----------------~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 258 -----------------IKGRFDMIISNPPFH-DGI----------------QTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred -----------------cCCCccEEEECCCcc-CCc----------------cccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 146899999999953 111 0001123568999999999999999999
Q ss_pred CCCCccc
Q psy15212 276 CSLWFEE 282 (329)
Q Consensus 276 CS~~~~E 282 (329)
.++.+-+
T Consensus 304 n~~l~y~ 310 (342)
T PRK09489 304 NAFLPYP 310 (342)
T ss_pred eCCCChH
Confidence 9888755
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=122.13 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=94.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|||+|||+|..++.++...+ .+|+|+|+|+.+++.+++|++++++. ++++.+|..+..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----------------- 178 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----------------- 178 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-----------------
Confidence 6899999999999999998776 79999999999999999999999985 889999976532
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhH-H---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND-I---KKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~-~---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+||+|++|||+.....+...++... ..+.. + ..-....+.++..+.++|+|||.+++.++.
T Consensus 179 --~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 179 --AGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred --cCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 2347999999999986654332232211 01100 0 112346788999999999999999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=121.65 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=101.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+.+|||+|||+|..+..+++..+ ..++++|+++.+++.++++++..++. ++++.+|+....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------------- 150 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------------- 150 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC----------------
Confidence 345899999999999999998766 69999999999999999999999987 889999986532
Q ss_pred cccCCCCCCEEEEccCCccccccccCC-CCcccCChhHH----HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNP-DIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p-~~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene 284 (329)
..++||.|++|||+...+.+.... +.+. ..+... ..-......+++.+.++|+|||.+++.. + .. ..
T Consensus 151 ---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~--~~-~~ 222 (251)
T TIGR03534 151 ---PGGKFDLIVSNPPYIPEADIHLLDPEVRF-HEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-G--YD-QG 222 (251)
T ss_pred ---cCCceeEEEECCCCCchhhhhhcChhhhh-cCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-C--cc-HH
Confidence 346899999999999776544321 1110 000000 0112334578999999999999999863 2 22 23
Q ss_pred HHHHHHHhhCCCcE
Q psy15212 285 EQAIIFSKNHKDSI 298 (329)
Q Consensus 285 ~vv~~~l~~~~~~~ 298 (329)
+.+..+++++ +++
T Consensus 223 ~~~~~~l~~~-gf~ 235 (251)
T TIGR03534 223 EAVRALFEAA-GFA 235 (251)
T ss_pred HHHHHHHHhC-CCC
Confidence 4455556655 343
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=116.40 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=101.2
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
.++....++...+++.++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|++++++. ++++.+|+...
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~- 93 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE- 93 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-
Confidence 3455556666677888899999999999999999998765 79999999999999999999998876 78888886421
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
....||+|+++..- + . ..++++.+.+.|+|||++++
T Consensus 94 -------------------~~~~~D~v~~~~~~---~---------------~-------~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 94 -------------------LPGKADAIFIGGSG---G---------------N-------LTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred -------------------cCcCCCEEEECCCc---c---------------C-------HHHHHHHHHHhcCCCeEEEE
Confidence 13579999975320 0 0 13468889999999999998
Q ss_pred EcCCCCccccHHHHHHHHhhC
Q psy15212 274 VTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 274 sTCS~~~~Ene~vv~~~l~~~ 294 (329)
... ..++...+..+++++
T Consensus 130 ~~~---~~~~~~~~~~~l~~~ 147 (187)
T PRK08287 130 TFI---LLENLHSALAHLEKC 147 (187)
T ss_pred EEe---cHhhHHHHHHHHHHC
Confidence 643 245666677778776
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=116.72 Aligned_cols=152 Identities=20% Similarity=0.134 Sum_probs=101.2
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+++|++|||+|||+|.++.++++..+ ++|+|+|+++.+++.+.+++++. -.+.++.+|+.....
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~------------ 134 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPER------------ 134 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcch------------
Confidence 6788999999999999999999999875 79999999999999888887653 237788889865310
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc------CCCCc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT------CSLWF 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT------CS~~~ 280 (329)
.+. ..+.||.|++|.+- | | ....+|+.+.++|||||+++.+. +...+
T Consensus 135 -~~~--l~~~~D~i~~d~~~---------p---~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 135 -YAH--VVEKVDVIYQDVAQ---------P---N------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred -hhh--ccccCCEEEECCCC---------h---h------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 000 12469999987541 1 0 01346889999999999999842 22222
Q ss_pred cccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 281 EESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.+--+.....++.. +|+.+... .+.| .+.+.|+.+++++
T Consensus 188 ~~~~~~~~~~l~~a-GF~~i~~~-~l~p------~~~~h~~~v~~~~ 226 (226)
T PRK04266 188 KEIFKEEIRKLEEG-GFEILEVV-DLEP------YHKDHAAVVARKK 226 (226)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEE-cCCC------CcCCeEEEEEEcC
Confidence 11111122444444 56655421 1222 3357888888764
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-13 Score=118.32 Aligned_cols=137 Identities=22% Similarity=0.258 Sum_probs=110.7
Q ss_pred EEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHH
Q psy15212 95 IKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMIS 172 (329)
Q Consensus 95 ~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~ 172 (329)
+.+-.+.....+..++.+.=.+--+.+.+++..+++.||++|||+|+|+|..|..+|...+ |+|+..|+.+..++.++
T Consensus 57 f~vl~p~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~ 136 (256)
T COG2519 57 FYVLKPTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136 (256)
T ss_pred EEEeCCCHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHH
Confidence 3444444444444577777777777788888899999999999999999999999997655 89999999999999999
Q ss_pred HHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH
Q psy15212 173 ENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 250 (329)
Q Consensus 173 ~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l 250 (329)
+|++..|+. +++..+|..+.. ....||.|++|.|--
T Consensus 137 ~Nl~~~~l~d~v~~~~~Dv~~~~-------------------~~~~vDav~LDmp~P----------------------- 174 (256)
T COG2519 137 ENLSEFGLGDRVTLKLGDVREGI-------------------DEEDVDAVFLDLPDP----------------------- 174 (256)
T ss_pred HHHHHhccccceEEEeccccccc-------------------cccccCEEEEcCCCh-----------------------
Confidence 999999885 788889988754 235899999999822
Q ss_pred HHHHHHHHHHHHhcCCCCCEE-EEEcCC
Q psy15212 251 SKYSCKILNNLWKMLKPGGKL-LFVTCS 277 (329)
Q Consensus 251 ~~~q~~lL~~a~~~LkpgG~l-vysTCS 277 (329)
-+.|+++.+.|+|||.+ +|+.|.
T Consensus 175 ----W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 175 ----WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ----HHHHHHHHHHhCCCcEEEEEcCCH
Confidence 24799999999999954 566664
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-13 Score=116.14 Aligned_cols=129 Identities=24% Similarity=0.342 Sum_probs=98.6
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~ 196 (329)
..++...+++.+|++|||+|||+|..+..++...+ ++|+++|+++.+++.+++|++.+|+ . +.++.+|+.+..
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l--- 105 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL--- 105 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH---
Confidence 34444456788999999999999999999988754 6999999999999999999999995 3 788888886532
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.. ....||.|+++.... ....+++.+.+.|+|||++++.+|
T Consensus 106 -------------~~-~~~~~D~V~~~~~~~-------------------------~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 106 -------------FT-INEKFDRIFIGGGSE-------------------------KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred -------------hh-cCCCCCEEEECCCcc-------------------------cHHHHHHHHHHHcCCCcEEEEEee
Confidence 11 235799999853100 124578999999999999999888
Q ss_pred CCCccccHHHHHHHHhhC
Q psy15212 277 SLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~ 294 (329)
++ ++...+...++++
T Consensus 147 ~~---~~~~~~~~~l~~~ 161 (198)
T PRK00377 147 LL---ETVNNALSALENI 161 (198)
T ss_pred cH---HHHHHHHHHHHHc
Confidence 54 4445555666655
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=124.32 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=96.8
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCcccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISKI 192 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~~ 192 (329)
|.++.+....+....+.+|||+|||+|..++.+++..+ .+|+++|+|+.+++.+++|++.++.. ++++..|+...
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 77888888887665567999999999999999999876 79999999999999999999988642 57777776542
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
. ...+||.|++|||+..-..+ +. . .-.++++.+.+.|+|||.|+
T Consensus 294 ~-------------------~~~~fDlIlsNPPfh~~~~~----------~~-~------ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 294 V-------------------EPFRFNAVLCNPPFHQQHAL----------TD-N------VAWEMFHHARRCLKINGELY 337 (378)
T ss_pred C-------------------CCCCEEEEEECcCcccCccC----------CH-H------HHHHHHHHHHHhcccCCEEE
Confidence 1 24589999999997521110 11 1 12468999999999999998
Q ss_pred EEcCC
Q psy15212 273 FVTCS 277 (329)
Q Consensus 273 ysTCS 277 (329)
+..-.
T Consensus 338 iV~nr 342 (378)
T PRK15001 338 IVANR 342 (378)
T ss_pred EEEec
Confidence 87533
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=113.18 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=99.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+|.+|||+|||+|..+..++...+ ++|+|+|.++.+++.+++++++.++. ++++.+|+.+..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------------- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------------- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----------------
Confidence 378999999999999999987665 79999999999999999999999986 899999987653
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
..+.||.|++++ . + ....+++.+.++|+|||+++.. +....+..+..
T Consensus 106 ---~~~~fD~I~s~~--~--~----------------------~~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~ 152 (181)
T TIGR00138 106 ---HEEQFDVITSRA--L--A----------------------SLNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEE 152 (181)
T ss_pred ---ccCCccEEEehh--h--h----------------------CHHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHH
Confidence 246899999753 0 0 0124677778999999999875 44555666666
Q ss_pred HHhhC--CCcEEecCCCcccCC
Q psy15212 290 FSKNH--KDSIRLNSPGQLLPT 309 (329)
Q Consensus 290 ~l~~~--~~~~~~~~~~~~~p~ 309 (329)
..++. -+++.++.+..++|+
T Consensus 153 ~~e~~~~~~~~~~~~~~~~~~~ 174 (181)
T TIGR00138 153 AKRKCQVLGVEPLEVPPLTGPD 174 (181)
T ss_pred HHHhhhhcCceEeeccccCCCc
Confidence 66653 366777666666664
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=115.46 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=98.0
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI 189 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~ 189 (329)
|.-..|...+.+....+.+.++++|||+|||+|..+..++...+ ++|+++|+++.+++.+++|++++++. ++++.+|+
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~ 99 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA 99 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence 43456788888888888888999999999999999999987655 79999999999999999999999886 88999987
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.... .. ....+|.|++|... . ..++++.+.+.|+|||
T Consensus 100 ~~~~----------------~~-~~~~~d~v~~~~~~-------------------~-------~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 100 PECL----------------AQ-LAPAPDRVCIEGGR-------------------P-------IKEILQAVWQYLKPGG 136 (196)
T ss_pred HHHH----------------hh-CCCCCCEEEEECCc-------------------C-------HHHHHHHHHHhcCCCe
Confidence 6421 01 12346888775310 0 1457899999999999
Q ss_pred EEEEEcCC
Q psy15212 270 KLLFVTCS 277 (329)
Q Consensus 270 ~lvysTCS 277 (329)
++++.+++
T Consensus 137 ~li~~~~~ 144 (196)
T PRK07402 137 RLVATASS 144 (196)
T ss_pred EEEEEeec
Confidence 99998876
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=117.16 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=90.9
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
|....+.........++++++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.|+. ++++.+|
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd 135 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD 135 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44444444455566677889999999999999999999998865 69999999999999999999999986 8999999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+.... .....||+|+++.-.. ++.....+.||||
T Consensus 136 ~~~~~------------------~~~~~fD~I~~~~~~~----------------------------~~~~~l~~~Lkpg 169 (212)
T PRK13942 136 GTLGY------------------EENAPYDRIYVTAAGP----------------------------DIPKPLIEQLKDG 169 (212)
T ss_pred cccCC------------------CcCCCcCEEEECCCcc----------------------------cchHHHHHhhCCC
Confidence 87532 2346899999864311 1122345579999
Q ss_pred CEEEEE
Q psy15212 269 GKLLFV 274 (329)
Q Consensus 269 G~lvys 274 (329)
|+|+..
T Consensus 170 G~lvi~ 175 (212)
T PRK13942 170 GIMVIP 175 (212)
T ss_pred cEEEEE
Confidence 998864
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-12 Score=117.16 Aligned_cols=154 Identities=23% Similarity=0.184 Sum_probs=116.8
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCce-EEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKA-TLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v-~~~~~D~~~~~~ 194 (329)
-|..|.+...-|....+.+|||+|||.|-.++.+++..+ .+|+-+|+|...++.++.|++.++++. .++..|.....
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 588899999999888777999999999999999999987 899999999999999999999999985 67777766532
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.++||.|++|||.- .| .......-.+|++.|.+.|++||.|...
T Consensus 222 -------------------~~kfd~IisNPPfh-~G----------------~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 222 -------------------EGKFDLIISNPPFH-AG----------------KAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred -------------------cccccEEEeCCCcc-CC----------------cchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 24899999999954 11 1111223357899999999999999887
Q ss_pred cCCCCccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 275 TCSLWFEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
.-...+- ...|++. .+.+.+ ....||+|=+-+|
T Consensus 266 an~~l~y------~~~L~~~Fg~v~~l-------------a~~~gf~Vl~a~k 299 (300)
T COG2813 266 ANRHLPY------EKKLKELFGNVEVL-------------AKNGGFKVLRAKK 299 (300)
T ss_pred EcCCCCh------HHHHHHhcCCEEEE-------------EeCCCEEEEEEec
Confidence 6654442 2334443 233333 3556887766554
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.1e-13 Score=116.65 Aligned_cols=115 Identities=17% Similarity=0.316 Sum_probs=87.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc-cccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI-SKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~-~~~~~~~~~~~~~~~~~~~ 208 (329)
++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.++++++..++. ++++++|+ ..+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~--------------- 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL--------------- 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH---------------
Confidence 578999999999999999998776 69999999999999999999998875 89999998 5433
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.++.||.|+++.|.. |......... ..+..+|+.+.++|||||+++++|+
T Consensus 105 -~~~~~~~~D~V~~~~~~p------------~~~~~~~~~~--~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 105 -DMFPDGSLDRIYLNFPDP------------WPKKRHHKRR--LVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred -HHcCccccceEEEECCCC------------CCCccccccc--cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 112456899999876521 1110000000 1246789999999999999998864
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=114.90 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=86.5
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
......++++++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|+++.++. ++++.+|+....
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~--- 137 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL--- 137 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC---
Confidence 34445667788999999999999999999998875 79999999999999999999999875 789999987642
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....||.|+++.... .+.....+.|+|||+|++.
T Consensus 138 ---------------~~~~~fD~Ii~~~~~~----------------------------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 138 ---------------EKHAPFDAIIVTAAAS----------------------------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ---------------ccCCCccEEEEccCcc----------------------------hhhHHHHHhcCcCcEEEEE
Confidence 1236899999886522 1123456779999999875
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-13 Score=111.60 Aligned_cols=108 Identities=25% Similarity=0.329 Sum_probs=88.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHh-CC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEI-AD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~-~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.+.+|||+|||+|..+..+++. .+ ++++++|+|+.+++.+++++++.++. +++.++|+.+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~-------------- 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP-------------- 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC--------------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc--------------
Confidence 46789999999999999999954 33 79999999999999999999999997 999999999854
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+. +.||.|+++.++.... ....+++.+.++|++||.++.+.+.
T Consensus 68 --~~~~-~~~D~I~~~~~l~~~~----------------------~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 68 --QELE-EKFDIIISNGVLHHFP----------------------DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --GCSS-TTEEEEEEESTGGGTS----------------------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --cccC-CCeeEEEEcCchhhcc----------------------CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1112 6899999987752110 1346789999999999999988776
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=102.99 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=86.4
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+.+.++++|||+|||+|..+..+++..+ .+|+++|+++.+++.++++++.+++. ++++..|+....
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------- 82 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL---------- 82 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC----------
Confidence 345667788999999999999999999876 79999999999999999999998876 788888876422
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ....+||.|+++.+- . ...++++.+.+.|+|||+++.+.
T Consensus 83 ------~-~~~~~~D~v~~~~~~------------------~-------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 ------E-DSLPEPDRVFIGGSG------------------G-------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ------h-hhcCCCCEEEECCcc------------------h-------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 0 123589999985420 0 12478999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=119.54 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=106.6
Q ss_pred cceEEEechhHHHHhhhc-CCCCCC-eEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEe
Q psy15212 111 NGFCSIQDAAAQLAAPLL-DIRSGM-YVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLIL 186 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l-~~~~g~-~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~ 186 (329)
.+.+.....+..++-.++ .....+ +|||+|||+|..++.++...+ ..|+|+|+|+..++.+++|++++|+. +.++.
T Consensus 87 ~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 87 EGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred CCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 355555666666665543 222223 799999999999999998877 69999999999999999999999974 45555
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhH----HHHHHHHHHHHHHHHH
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND----IKKLSKYSCKILNNLW 262 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~----~~~l~~~q~~lL~~a~ 262 (329)
+|..... .++||+|++||||-..-.....|+.... .+.. -..-....++++..+.
T Consensus 167 ~dlf~~~--------------------~~~fDlIVsNPPYip~~~~~~~~~~~~~-EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 167 SDLFEPL--------------------RGKFDLIVSNPPYIPAEDPELLPEVVRY-EPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred eeccccc--------------------CCceeEEEeCCCCCCCcccccChhhhcc-CHHHHHccCccHHHHHHHHHHhhH
Confidence 5655432 2489999999999655422222221100 0100 0022446788999999
Q ss_pred hcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 263 KMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 263 ~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
++|+|||.++.- + .....+.+.+.|.+..
T Consensus 226 ~~l~~~g~l~le-~--g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 226 DILKPGGVLILE-I--GLTQGEAVKALFEDTG 254 (280)
T ss_pred HHcCCCcEEEEE-E--CCCcHHHHHHHHHhcC
Confidence 999999988854 2 2233445555554443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-12 Score=110.85 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=96.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..++...+ ++|+++|.++.+++.+++++++.++. ++++.+|+.+..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~--------------- 108 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG--------------- 108 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC---------------
Confidence 3488999999999999999997655 79999999999999999999999986 899999987764
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
. .++||.|+++. .+ . -..+++.+.++|+|||++++....... ..+.
T Consensus 109 ---~-~~~fDlV~~~~----~~---------------~-------~~~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~ 154 (187)
T PRK00107 109 ---Q-EEKFDVVTSRA----VA---------------S-------LSDLVELCLPLLKPGGRFLALKGRDPE----EEIA 154 (187)
T ss_pred ---C-CCCccEEEEcc----cc---------------C-------HHHHHHHHHHhcCCCeEEEEEeCCChH----HHHH
Confidence 1 46899999752 00 0 135788999999999999987655333 3344
Q ss_pred HHHhhCCCcEEecCCCcccCCC
Q psy15212 289 IFSKNHKDSIRLNSPGQLLPTV 310 (329)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~p~~ 310 (329)
...+.. +..+...-...+|+.
T Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~ 175 (187)
T PRK00107 155 ELPKAL-GGKVEEVIELTLPGL 175 (187)
T ss_pred HHHHhc-CceEeeeEEEecCCC
Confidence 444443 444433222345664
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-12 Score=116.68 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=82.7
Q ss_pred HHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 121 AQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 121 s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|.|++.++ .+++|++|||+|||||.++.++|+..+ ++|+|+|+++.+++.+.+..+.. -.+.++..|++..
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p 193 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYP 193 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccCh
Confidence 66776663 478999999999999999999999985 79999999988776666655432 2367888898753
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH-HHHHHHHhcCCCCCEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC-KILNNLWKMLKPGGKL 271 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~-~lL~~a~~~LkpgG~l 271 (329)
. . +. ...+.||+|++|.. .|+ |. .++.++.++|||||++
T Consensus 194 ~--~------------y~-~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~ 233 (293)
T PTZ00146 194 Q--K------------YR-MLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHF 233 (293)
T ss_pred h--h------------hh-cccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEE
Confidence 2 0 00 12247999999974 111 33 3455788999999999
Q ss_pred EEE
Q psy15212 272 LFV 274 (329)
Q Consensus 272 vys 274 (329)
+.+
T Consensus 234 vI~ 236 (293)
T PTZ00146 234 IIS 236 (293)
T ss_pred EEE
Confidence 985
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=111.62 Aligned_cols=122 Identities=26% Similarity=0.327 Sum_probs=88.2
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE---------EEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK---------LISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~---------v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
+.....+.++++|+.|||.+||+|++.+..|.... .. ++|+|+++..++.+++|++..|+. +.+...|
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 33444556788999999999999999988876544 33 899999999999999999999986 7899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
++.++ ...+.+|.|++|||+- ........+..+..++++.+.+.|++
T Consensus 97 ~~~l~------------------~~~~~~d~IvtnPPyG--------------~r~~~~~~~~~ly~~~~~~~~~~l~~- 143 (179)
T PF01170_consen 97 ARELP------------------LPDGSVDAIVTNPPYG--------------RRLGSKKDLEKLYRQFLRELKRVLKP- 143 (179)
T ss_dssp GGGGG------------------GTTSBSCEEEEE--ST--------------TSHCHHHHHHHHHHHHHHHHHCHSTT-
T ss_pred hhhcc------------------cccCCCCEEEECcchh--------------hhccCHHHHHHHHHHHHHHHHHHCCC-
Confidence 99875 2456899999999964 22333445577889999999999998
Q ss_pred CEEEEEcC
Q psy15212 269 GKLLFVTC 276 (329)
Q Consensus 269 G~lvysTC 276 (329)
+.++.|+
T Consensus 144 -~~v~l~~ 150 (179)
T PF01170_consen 144 -RAVFLTT 150 (179)
T ss_dssp -CEEEEEE
T ss_pred -CEEEEEE
Confidence 4444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=114.55 Aligned_cols=114 Identities=20% Similarity=0.423 Sum_probs=90.3
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~ 198 (329)
......+.+++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.++. ++++.+|+...+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----- 109 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP----- 109 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-----
Confidence 3444566788899999999999999999998764 69999999999999999999988876 889999987754
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+..++||.|+++-. ++..++ ..++|+.+.+.|+|||+++..+
T Consensus 110 -------------~~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 110 -------------FDDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred -------------CCCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 24578999987532 111111 2357899999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=112.55 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=83.6
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI 189 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~ 189 (329)
.|....|----....++|++++|++||++|||+|..+..||++.+ +|+++|+.+...+.+++|++.+|+. +.++++|.
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 466666665566677888999999999999999999999999876 9999999999999999999999995 99999998
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
..- |.....||+|++.+-+.
T Consensus 130 ~~G------------------~~~~aPyD~I~Vtaaa~ 149 (209)
T COG2518 130 SKG------------------WPEEAPYDRIIVTAAAP 149 (209)
T ss_pred ccC------------------CCCCCCcCEEEEeeccC
Confidence 762 23457999999876543
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=114.45 Aligned_cols=137 Identities=23% Similarity=0.304 Sum_probs=108.7
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-------CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCccc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-------IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISK 191 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-------~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~ 191 (329)
+.+..|+|.+|.+|||+|+|+|-.+..+.+..+ .+|+.+|+|+++|+..+++.++.++. +.++.+|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 445677899999999999999999999988754 59999999999999999999888774 6789999999
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
++ +++..||...+ +.|+ |.-++ ..+.|++|++.|||||++
T Consensus 171 Lp------------------Fdd~s~D~yTi-----afGI-RN~th----------------~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 171 LP------------------FDDDSFDAYTI-----AFGI-RNVTH----------------IQKALREAYRVLKPGGRF 210 (296)
T ss_pred CC------------------CCCCcceeEEE-----ecce-ecCCC----------------HHHHHHHHHHhcCCCcEE
Confidence 87 56788998763 2332 11111 134689999999999988
Q ss_pred EEEcCCCCccccHHHHHHHHhhCCCcEEecCC
Q psy15212 272 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP 303 (329)
Q Consensus 272 vysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~ 303 (329)
. |--++.+|.+.+++|.+.+ -+..+|..
T Consensus 211 ~---cLeFskv~~~~l~~fy~~y-sf~Vlpvl 238 (296)
T KOG1540|consen 211 S---CLEFSKVENEPLKWFYDQY-SFDVLPVL 238 (296)
T ss_pred E---EEEccccccHHHHHHHHhh-hhhhhchh
Confidence 7 7777788878899998877 45556654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=121.46 Aligned_cols=107 Identities=16% Similarity=0.240 Sum_probs=87.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++++|||+|||+|+.+..+++..+.+|+|+|+++.+++.++++.+..|+. ++++.+|+...+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--------------- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--------------- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---------------
Confidence 678899999999999999999877779999999999999999999988874 899999998765
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|++. ..+.+.++ ..++++++.++|||||+++.+++.
T Consensus 182 ---~~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 182 ---FEDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ---CCCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 356789999852 11111111 246789999999999999998753
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=111.73 Aligned_cols=114 Identities=25% Similarity=0.229 Sum_probs=89.0
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccch
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINL 194 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~ 194 (329)
.+-........++.++++++|||+|||+|..+..+++.. ++|+++|+++.+++.+++++++.++. ++++.+|+....
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW- 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-
Confidence 333333444556788899999999999999999888765 49999999999999999999999986 899999976532
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+.||+|++++++.. +.+...+.|+|||+++.+
T Consensus 140 -----------------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 140 -----------------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred -----------------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEEEEE
Confidence 12368999999876431 123456789999999987
Q ss_pred cC
Q psy15212 275 TC 276 (329)
Q Consensus 275 TC 276 (329)
..
T Consensus 175 ~~ 176 (212)
T PRK00312 175 VG 176 (212)
T ss_pred Ec
Confidence 54
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=120.21 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=88.6
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|...-..+...+++++|++|||+|||.|+.+..+|+..+.+|+++.+|+...+.+++.+++.|+. +++...|.++++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~- 125 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP- 125 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-
Confidence 33444566777789999999999999999999999988889999999999999999999999996 889999988765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+||+|+ +.|++.+-+.. ....+++.+.++|||||+++.-
T Consensus 126 --------------------~~fD~Iv------Si~~~Ehvg~~--------------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 --------------------GKFDRIV------SIEMFEHVGRK--------------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---------------------S-SEEE------EESEGGGTCGG--------------GHHHHHHHHHHHSETTEEEEEE
T ss_pred --------------------CCCCEEE------EEechhhcChh--------------HHHHHHHHHHHhcCCCcEEEEE
Confidence 3899998 34555433211 1246789999999999999877
Q ss_pred cCCCC
Q psy15212 275 TCSLW 279 (329)
Q Consensus 275 TCS~~ 279 (329)
+++..
T Consensus 166 ~i~~~ 170 (273)
T PF02353_consen 166 TITHR 170 (273)
T ss_dssp EEEE-
T ss_pred ecccc
Confidence 65543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=121.02 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=70.6
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+...++.+|||+|||+|..++.+|+.. .+|+|+|+++.+++.+++|++.+|+. ++++.+|+..+.
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~------------- 234 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA------------- 234 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH-------------
Confidence 333457899999999999999999854 69999999999999999999999996 899999987653
Q ss_pred ccccccCCCCCCEEEEccCCccc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.. ..+.||.|++|||+.|.
T Consensus 235 ---~~-~~~~~D~Vv~dPPr~G~ 253 (315)
T PRK03522 235 ---TA-QGEVPDLVLVNPPRRGI 253 (315)
T ss_pred ---Hh-cCCCCeEEEECCCCCCc
Confidence 10 12469999999998764
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=116.26 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=105.0
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|-..-.++...|.++||++|||+|||-|+.+..+|+..+.+|+|+++|++..+.+++++...|+. +++...|..++.
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 44445566677789999999999999999999999998899999999999999999999999997 889999988765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.||+|+ +.|++.+-.. +....+++.+.+.|+|||+++.-
T Consensus 136 --------------------e~fDrIv------SvgmfEhvg~--------------~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 136 --------------------EPFDRIV------SVGMFEHVGK--------------ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred --------------------cccceee------ehhhHHHhCc--------------ccHHHHHHHHHhhcCCCceEEEE
Confidence 4599998 4455432211 12456899999999999999887
Q ss_pred cCCCCccccHHHHHHHHhhC
Q psy15212 275 TCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~ 294 (329)
|-+....+-. -...|+.++
T Consensus 176 ~I~~~~~~~~-~~~~~i~~y 194 (283)
T COG2230 176 SITGPDQEFR-RFPDFIDKY 194 (283)
T ss_pred EecCCCcccc-cchHHHHHh
Confidence 6554332222 334445544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=115.80 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=85.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
-+|.+|||+|||-|..+..||++ |..|+|+|++++.++.++......|+.+......+.++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~----------------- 119 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA----------------- 119 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-----------------
Confidence 36899999999999999999975 579999999999999999999999988766666665544
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+++||+|+| .+-+++... ...+++.+.+++||||.++.||-.
T Consensus 120 -~~~~~FDvV~c---------------------mEVlEHv~d-p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 120 -SAGGQFDVVTC---------------------MEVLEHVPD-PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -hcCCCccEEEE---------------------hhHHHccCC-HHHHHHHHHHHcCCCcEEEEeccc
Confidence 12479999996 222333332 345999999999999999999754
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=113.23 Aligned_cols=115 Identities=22% Similarity=0.360 Sum_probs=88.0
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHH---cCC-ceEEEecCccccchhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKR---LNL-KATLILSDISKINLKK 196 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~---~g~-~v~~~~~D~~~~~~~~ 196 (329)
++...+.+.++++|||+|||+|..+..+++..+ ++|+|+|+|+.+++.++++... .+. .++++.+|+..++
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp--- 140 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP--- 140 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---
Confidence 444566778899999999999999999988754 6999999999999999887642 123 3789999998865
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.++.||.|++.- +++.-++ ..++|+++.+.|||||+++.++.
T Consensus 141 ---------------~~~~sfD~V~~~~------~l~~~~d----------------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 141 ---------------FDDCYFDAITMGY------GLRNVVD----------------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ---------------CCCCCEeEEEEec------ccccCCC----------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 3567899998521 1111111 34579999999999999998865
Q ss_pred C
Q psy15212 277 S 277 (329)
Q Consensus 277 S 277 (329)
+
T Consensus 184 ~ 184 (261)
T PLN02233 184 N 184 (261)
T ss_pred C
Confidence 5
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=116.19 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=87.5
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
-+...++...+++.||++||+.|+|+|+.|..++...+ |+|+..|.++.+++.+++|+++.|+. +++.+.|.....
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 34445556688999999999999999999999998765 89999999999999999999999996 899999986532
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC-CCCCEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML-KPGGKLL 272 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L-kpgG~lv 272 (329)
. ....+..||.|++|.|.- |. .+.++.+.| ++||+++
T Consensus 106 ~---------------~~~~~~~~DavfLDlp~P------------w~---------------~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 106 F---------------DEELESDFDAVFLDLPDP------------WE---------------AIPHAKRALKKPGGRIC 143 (247)
T ss_dssp ----------------STT-TTSEEEEEEESSSG------------GG---------------GHHHHHHHE-EEEEEEE
T ss_pred c---------------cccccCcccEEEEeCCCH------------HH---------------HHHHHHHHHhcCCceEE
Confidence 0 000136799999999943 32 588889999 8999664
Q ss_pred -EEcC
Q psy15212 273 -FVTC 276 (329)
Q Consensus 273 -ysTC 276 (329)
||.|
T Consensus 144 ~fsP~ 148 (247)
T PF08704_consen 144 CFSPC 148 (247)
T ss_dssp EEESS
T ss_pred EECCC
Confidence 5555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=114.50 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=103.6
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
--++..++..+|+ .++|.+|||+|||+|-.++.++++...+|+|+|+++..++.+++|++++++. ++....+....
T Consensus 145 ~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 145 THPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred CChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 4667788888875 6789999999999999999999765579999999999999999999999987 33333332222
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
...++||+|++| -|+..-.++...+.+.|||||+++
T Consensus 225 -------------------~~~~~~DvIVAN-------------------------ILA~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 225 -------------------PENGPFDVIVAN-------------------------ILAEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred -------------------cccCcccEEEeh-------------------------hhHHHHHHHHHHHHHHcCCCceEE
Confidence 134699999954 256667788999999999999999
Q ss_pred EEcCCCCccccHHHHHHHHhhCCCcEEec
Q psy15212 273 FVTCSLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 273 ysTCS~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.|- +..+. ++.|...+.+. ++++++
T Consensus 261 lSG--Il~~q-~~~V~~a~~~~-gf~v~~ 285 (300)
T COG2264 261 LSG--ILEDQ-AESVAEAYEQA-GFEVVE 285 (300)
T ss_pred EEe--ehHhH-HHHHHHHHHhC-CCeEeE
Confidence 985 55555 44455555443 566654
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-12 Score=124.02 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=72.3
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.+.+.+|++|||+|||+|..++.+|+.. .+|+|+|+|+.+++.+++|++.+|+. ++++.+|+.+.. ...
T Consensus 292 ~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~~~-------- 361 (443)
T PRK13168 292 WLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-TDQ-------- 361 (443)
T ss_pred HhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-hhh--------
Confidence 4456788999999999999999999865 59999999999999999999999986 899999986532 000
Q ss_pred cccccccCCCCCCEEEEccCCccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
. +.++.||+|++|||++|.
T Consensus 362 ----~-~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 362 ----P-WALGGFDKVLLDPPRAGA 380 (443)
T ss_pred ----h-hhcCCCCEEEECcCCcCh
Confidence 0 123579999999998853
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=123.86 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=97.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
++.+|||+|||+|..++.++...+ .+|+|+|+|+.+++.+++|++++++. +.++.+|+....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--------------- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--------------- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC---------------
Confidence 356899999999999999998765 79999999999999999999999874 788888875421
Q ss_pred ccccCCCCCCEEEEccCCcccccccc-CCCCcccCChhH----HHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRR-NPDIPWLRRKND----IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~~~~~~~~----~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
..++||+|++|||+....-... .++..- ..+.. -..-....+++++.+.++|+|||.+++. + .....
T Consensus 203 ----~~~~fDlIvsNPPYi~~~~~~~l~~~v~~-~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-i--g~~q~ 274 (506)
T PRK01544 203 ----EKQKFDFIVSNPPYISHSEKSEMAIETIN-YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-I--GFKQE 274 (506)
T ss_pred ----cCCCccEEEECCCCCCchhhhhcCchhhc-cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-E--CCchH
Confidence 2457999999999986544211 111110 00000 0112235678999999999999999875 2 23333
Q ss_pred HHHHHHHHhhC
Q psy15212 284 EEQAIIFSKNH 294 (329)
Q Consensus 284 e~vv~~~l~~~ 294 (329)
+.|..++.++
T Consensus 275 -~~v~~~~~~~ 284 (506)
T PRK01544 275 -EAVTQIFLDH 284 (506)
T ss_pred -HHHHHHHHhc
Confidence 3444444443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=112.92 Aligned_cols=108 Identities=21% Similarity=0.346 Sum_probs=86.3
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..+.+|++|||+|||+|..+..++...+ ++|+++|+++.+++.++++....++. ++++.+|+..++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~----------- 141 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP----------- 141 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-----------
Confidence 4577899999999999998888887665 58999999999999999999998886 788889987654
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||.|+++.- +...|+ ..+++++++++|||||+++++.
T Consensus 142 -------~~~~~fD~Vi~~~v------~~~~~d----------------~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 -------VADNSVDVIISNCV------INLSPD----------------KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred -------CCCCceeEEEEcCc------ccCCCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 24568999997631 211111 1357999999999999999874
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=106.88 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=93.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccch-hhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.++|.+|||+|||||..+..+++..+ +.|+|+|+++. .+. .++++++|+..... ..+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~------- 110 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALL------- 110 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHH-------
Confidence 35788999999999999999999875 69999999881 122 27899999887530 0000
Q ss_pred cccccccCCCCCCEEEEcc-CCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccH
Q psy15212 206 NNRFRFYKNKYFDRILADL-PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~-PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene 284 (329)
..+..+.||.|++|+ |.. .|. | ..+..........+|+.+.++|||||+++..+ +..+..
T Consensus 111 ----~~~~~~~~D~V~S~~~~~~-~g~----~-------~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~ 171 (209)
T PRK11188 111 ----ERVGDSKVQVVMSDMAPNM-SGT----P-------AVDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGF 171 (209)
T ss_pred ----HHhCCCCCCEEecCCCCcc-CCC----h-------HHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCH
Confidence 012357899999986 321 111 0 01111112224578999999999999999753 334443
Q ss_pred HHHHHHHhh-CCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 285 EQAIIFSKN-HKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 285 ~vv~~~l~~-~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
..+-..+.+ +..++... |...+....+.|++|+
T Consensus 172 ~~~l~~l~~~f~~v~~~K------p~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 172 DEYLREIRSLFTKVKVRK------PDSSRARSREVYIVAT 205 (209)
T ss_pred HHHHHHHHhCceEEEEEC------CccccccCceeEEEee
Confidence 333333433 23333332 3222235667888875
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=113.90 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=93.3
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
..+++.++..++. ..+|++|||+|||+|..+..++.+...+|+|+|+++.+++.+++|+..+++. +.+...|....
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~ 221 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP 221 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc
Confidence 3456666655553 5678999999999999998888653369999999999999999999999886 45555552221
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
..++||+|+++... ....+++..+.++|||||+++
T Consensus 222 --------------------~~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 222 --------------------IEGKADVIVANILA-------------------------EVIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred --------------------cCCCceEEEEecCH-------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence 24689999987421 112457889999999999999
Q ss_pred EEcCCCCccccHHHHHHHHhhC
Q psy15212 273 FVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 273 ysTCS~~~~Ene~vv~~~l~~~ 294 (329)
.|.. ..++.++ +...++.+
T Consensus 257 ~sgi--~~~~~~~-v~~~~~~~ 275 (288)
T TIGR00406 257 LSGI--LETQAQS-VCDAYEQG 275 (288)
T ss_pred EEeC--cHhHHHH-HHHHHHcc
Confidence 8764 3333334 44444543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=111.09 Aligned_cols=193 Identities=19% Similarity=0.157 Sum_probs=118.6
Q ss_pred CCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCC-C------CCHH---HHHHHHHHCCCeeEEeCCceEEEcC
Q psy15212 30 NYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQR-K------TTLI---SYNKLLKKSGLETTIIGPLAIKLHT 99 (329)
Q Consensus 30 s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~-k------~~~~---~~~~~l~~~g~~~~~~~~~~~~~~~ 99 (329)
.+|.++.+.+...+|....|.+.++.+-...|-.+-.+.. . .+.+ .+...|.. +. ++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~--p~--------- 88 (314)
T TIGR00452 22 TLPAQIANWQRQQHGLFKQWSNAVEFLPEIKPYRLDLLMLVCNDKSNPLSAGQIKRILEEIMA--LM--PW--------- 88 (314)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCcCeeeccCccccCCCCCCCHHHHHHHHHHHHh--cC--CC---------
Confidence 4666665544456898778999999888877765555442 0 1121 12222222 11 11
Q ss_pred CCCCCCCcccccceEEEechhHHHH----hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHH
Q psy15212 100 PISISKIPKFFNGFCSIQDAAAQLA----APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL 175 (329)
Q Consensus 100 ~~~~~~~~~~~~G~~~~Qd~~s~l~----~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~ 175 (329)
..-+...+|+.+.-+-.|.+. ...+.+.+|.+|||+|||+|..+..++......|+|+|.|+.++..++..-
T Consensus 89 ----~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~ 164 (314)
T TIGR00452 89 ----RKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVR 164 (314)
T ss_pred ----CCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHH
Confidence 111111233333323334332 223356778999999999999998888764468999999999987654433
Q ss_pred HHcCC--ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHH
Q psy15212 176 KRLNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 253 (329)
Q Consensus 176 ~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~ 253 (329)
+..+. .+.+...|+..++ ....||.|++ .|++-+.++
T Consensus 165 ~~~~~~~~v~~~~~~ie~lp-------------------~~~~FD~V~s------~gvL~H~~d---------------- 203 (314)
T TIGR00452 165 KLLDNDKRAILEPLGIEQLH-------------------ELYAFDTVFS------MGVLYHRKS---------------- 203 (314)
T ss_pred HHhccCCCeEEEECCHHHCC-------------------CCCCcCEEEE------cchhhccCC----------------
Confidence 33222 3667777776654 1247999994 344433221
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 254 SCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 254 q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
....|+++.+.|||||.||.+|..+..
T Consensus 204 p~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 204 PLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 235789999999999999998765443
|
Known examples to date are restricted to the proteobacteria. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=113.01 Aligned_cols=117 Identities=24% Similarity=0.326 Sum_probs=85.6
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
|....|-..-....++|+++||++|||+|||+|..|..++.+.+ ++|+++|+++..++.+++|+++++.. +.++.+|
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 33343333344455677899999999999999999999999876 68999999999999999999999996 8999999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
..... .....||+|++.+.|.. +=...++.|++|
T Consensus 132 g~~g~------------------~~~apfD~I~v~~a~~~----------------------------ip~~l~~qL~~g 165 (209)
T PF01135_consen 132 GSEGW------------------PEEAPFDRIIVTAAVPE----------------------------IPEALLEQLKPG 165 (209)
T ss_dssp GGGTT------------------GGG-SEEEEEESSBBSS------------------------------HHHHHTEEEE
T ss_pred hhhcc------------------ccCCCcCEEEEeeccch----------------------------HHHHHHHhcCCC
Confidence 86532 13468999999876541 112234568999
Q ss_pred CEEEEE
Q psy15212 269 GKLLFV 274 (329)
Q Consensus 269 G~lvys 274 (329)
|+||.-
T Consensus 166 GrLV~p 171 (209)
T PF01135_consen 166 GRLVAP 171 (209)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999953
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=108.97 Aligned_cols=138 Identities=12% Similarity=0.213 Sum_probs=97.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+.+|||+|||+|..+..+|+..+ ..++|+|+++.+++.+++++.+.++. ++++.+|+..+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~--------------- 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD--------------- 80 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH---------------
Confidence 456999999999999999998876 79999999999999999999999886 8999999976430
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
..+..+.+|.|+++.|.- |........+ -.+.++++.+.+.|||||.|+++|-. ..--++.+ .
T Consensus 81 ~~~~~~~~d~v~~~~pdp------------w~k~~h~~~r--~~~~~~l~~~~r~LkpgG~l~~~td~--~~~~~~~~-~ 143 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDP------------WPKKRHNKRR--ITQPHFLKEYANVLKKGGVIHFKTDN--EPLFEDML-K 143 (194)
T ss_pred hhCCCCceeEEEEECCCc------------CCCCCccccc--cCCHHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHH-H
Confidence 112345899999997632 1110000000 12456899999999999999887522 11122222 2
Q ss_pred HHhhCCCcEEec
Q psy15212 290 FSKNHKDSIRLN 301 (329)
Q Consensus 290 ~l~~~~~~~~~~ 301 (329)
.+..+++++.+.
T Consensus 144 ~~~~~~~f~~~~ 155 (194)
T TIGR00091 144 VLSENDLFENTS 155 (194)
T ss_pred HHHhCCCeEecc
Confidence 334556666543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=118.38 Aligned_cols=128 Identities=20% Similarity=0.322 Sum_probs=100.2
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
++|+.-.+. .+....+..+||+|||+|..++++|...+ ..++|+|+++.++..+.+++.+.|+. +.++.+|+..+.
T Consensus 108 ~~d~~~~~~--~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll 185 (390)
T PRK14121 108 ILDIDNFLD--FISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL 185 (390)
T ss_pred cCCHHHHHH--HhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh
Confidence 455443322 23345677999999999999999999887 79999999999999999999999987 899999987653
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
..+.++.+|.|++..|+- |..... .++ .+..+|+.+.++|+|||.+.+
T Consensus 186 ----------------~~~~~~s~D~I~lnFPdP------------W~KkrH--RRl--v~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 186 ----------------ELLPSNSVEKIFVHFPVP------------WDKKPH--RRV--ISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred ----------------hhCCCCceeEEEEeCCCC------------ccccch--hhc--cHHHHHHHHHHHcCCCcEEEE
Confidence 123567899999987754 332221 222 367899999999999999999
Q ss_pred EcCC
Q psy15212 274 VTCS 277 (329)
Q Consensus 274 sTCS 277 (329)
.|.+
T Consensus 234 ~TD~ 237 (390)
T PRK14121 234 RTDS 237 (390)
T ss_pred EEEC
Confidence 9886
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=109.02 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=93.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
.++...++...++.+|||+|||+|.-++.++..++ ++|+++|+++++++.+++|+++.|+. ++++.+|+.+.- +.
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L-~~ 135 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL-DQ 135 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HH
Confidence 44555555666678999999999999999988765 79999999999999999999999985 899999987642 11
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+. .....+.||.|++|++= .....+++.+.++|+|||.++...+
T Consensus 136 l~-----------~~~~~~~fD~VfiDa~k-------------------------~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 136 LL-----------NNDPKPEFDFAFVDADK-------------------------PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HH-----------hCCCCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 10 00013589999999751 1133578888999999999997665
Q ss_pred CC
Q psy15212 277 SL 278 (329)
Q Consensus 277 S~ 278 (329)
-+
T Consensus 180 l~ 181 (234)
T PLN02781 180 LW 181 (234)
T ss_pred Cc
Confidence 43
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=122.19 Aligned_cols=111 Identities=19% Similarity=0.334 Sum_probs=84.9
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.++.+.++++|||+|||+|..++.+|+.. .+|+|+|+++.+++.+++|++.+|+. ++++.+|+.... +.+
T Consensus 286 ~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-~~~------- 356 (431)
T TIGR00479 286 EALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-PKQ------- 356 (431)
T ss_pred HHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH-HHH-------
Confidence 34456788999999999999999999865 49999999999999999999999986 899999987532 100
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. .....||+|++|||..|.. .++++... .++|++ ++|.+|.
T Consensus 357 -----~-~~~~~~D~vi~dPPr~G~~------------------------~~~l~~l~-~l~~~~-ivyvsc~ 397 (431)
T TIGR00479 357 -----P-WAGQIPDVLLLDPPRKGCA------------------------AEVLRTII-ELKPER-IVYVSCN 397 (431)
T ss_pred -----H-hcCCCCCEEEECcCCCCCC------------------------HHHHHHHH-hcCCCE-EEEEcCC
Confidence 0 1235799999999987531 23444333 367765 8888896
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=117.95 Aligned_cols=150 Identities=19% Similarity=0.314 Sum_probs=104.1
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~ 194 (329)
.-++.+++..++. ..+|++|||+|||+|..++.++.+...+|+|+|+++..++.+++|++.+|+..++........
T Consensus 144 ~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~-- 221 (295)
T PF06325_consen 144 HHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDL-- 221 (295)
T ss_dssp HCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCT--
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccc--
Confidence 3556777777775 678999999999999999988876447999999999999999999999999744433221111
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+||+|+.|- +......++....++|+|||+|+.|
T Consensus 222 ------------------~~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 ------------------VEGKFDLVVANI-------------------------LADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp ------------------CCS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ------------------ccccCCEEEECC-------------------------CHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 237899999652 2223456777788899999999975
Q ss_pred cCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 275 TCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
-+..++.+.+++.+ ++ +++++.. ...+++..-.++|+
T Consensus 259 --GIl~~~~~~v~~a~-~~--g~~~~~~-----------~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 259 --GILEEQEDEVIEAY-KQ--GFELVEE-----------REEGEWVALVFKKK 295 (295)
T ss_dssp --EEEGGGHHHHHHHH-HT--TEEEEEE-----------EEETTEEEEEEEE-
T ss_pred --cccHHHHHHHHHHH-HC--CCEEEEE-----------EEECCEEEEEEEeC
Confidence 34455555565555 43 7776643 23456666666664
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-11 Score=109.43 Aligned_cols=129 Identities=12% Similarity=0.107 Sum_probs=100.5
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDIS 190 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~ 190 (329)
.+.....++...++...+..+|||+|++.|.-|+.+|..++ ++|+++|.++++++.+++|+++.|+. ++++.+|+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 44555666677777777788999999999999999998775 79999999999999999999999996 899999987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
+.- +.+. .....+.||.|++|++= ....+.++.+.++|+|||.
T Consensus 181 e~L-~~l~-----------~~~~~~~FD~VFIDa~K-------------------------~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 181 ESL-KSMI-----------QNGEGSSYDFAFVDADK-------------------------RMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred HHH-HHHH-----------hcccCCCCCEEEECCCH-------------------------HHHHHHHHHHHHhcCCCcE
Confidence 742 1110 00013589999999971 1245678888999999999
Q ss_pred EEEEcCCCCc
Q psy15212 271 LLFVTCSLWF 280 (329)
Q Consensus 271 lvysTCS~~~ 280 (329)
+|.-..-++.
T Consensus 224 IV~DNvL~~G 233 (278)
T PLN02476 224 IVMDNVLWHG 233 (278)
T ss_pred EEEecCccCC
Confidence 9987665443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=106.12 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=85.0
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
.....+...++.+|||+|||+|..+..+|+. +.+|+|+|+|+.+++.+++++...++. +++...|+....
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-------- 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC--------
Confidence 3344555667789999999999999999986 459999999999999999999998886 788888876654
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+ ++.||.|++... +. | ..++ ....+++.+.++|+|||++++.
T Consensus 92 ----------~-~~~fD~I~~~~~------~~------~-~~~~-------~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 ----------F-DGEYDFILSTVV------LM------F-LEAK-------TIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ----------c-CCCcCEEEEecc------hh------h-CCHH-------HHHHHHHHHHHHcCCCcEEEEE
Confidence 1 357999995321 10 0 0111 2456899999999999986554
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-11 Score=108.15 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=98.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+.++.+|||+|||+|..+..++.+.+ .+|+++|+++.+++.+++++. .++++++|+..+.
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~-------------- 122 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFE-------------- 122 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhc--------------
Confidence 455567999999999999999988764 699999999999999988742 3788999988654
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE--EEEcCCC-CccccH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL--LFVTCSL-WFEESE 284 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l--vysTCS~-~~~Ene 284 (329)
...+||.|++|||+.....-.+.....|.-.......+ .-.++++.+..+|+|+|.+ +||.--+ |..-..
T Consensus 123 -----~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l--~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~ 195 (279)
T PHA03411 123 -----SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVM--TLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKS 195 (279)
T ss_pred -----ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccc--cHHHHHhhhHheecCCceEEEEEeccccccccCCH
Confidence 24689999999998865433222221221000000000 0246788888999999954 4554222 333444
Q ss_pred HHHHHHHhhCCCcEEec
Q psy15212 285 EQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 285 ~vv~~~l~~~~~~~~~~ 301 (329)
+....+|+.+ +|...+
T Consensus 196 ~~y~~~l~~~-g~~~~~ 211 (279)
T PHA03411 196 NKYLKWSKQT-GLVTYA 211 (279)
T ss_pred HHHHHHHHhc-CcEecC
Confidence 5567778776 555443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=106.85 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..++.++.....+|+++|+++..++.+++|++.+|+. ++++.+|+....
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l---------------- 115 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL---------------- 115 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH----------------
Confidence 568899999999999998765544479999999999999999999999986 899999986532
Q ss_pred cccCCCCCCEEEEccCCc
Q psy15212 210 RFYKNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCs 227 (329)
.. ....||+|++|||+-
T Consensus 116 ~~-~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 116 AQ-PGTPHNVVFVDPPFR 132 (199)
T ss_pred hh-cCCCceEEEECCCCC
Confidence 11 134699999999953
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=111.39 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=92.5
Q ss_pred cccceEEEech-hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEec
Q psy15212 109 FFNGFCSIQDA-AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILS 187 (329)
Q Consensus 109 ~~~G~~~~Qd~-~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~ 187 (329)
|..|++..... ....+...+.+.++.+|||+|||+|..+..++...+++|+++|+++.+++.++++... .-.+.+..+
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~ 106 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEAN 106 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEEC
Confidence 34455555422 2333445567889999999999999999999876667999999999999999988754 223788889
Q ss_pred CccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH-HHHHHHHHHHHhcCC
Q psy15212 188 DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS-KYSCKILNNLWKMLK 266 (329)
Q Consensus 188 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~-~~q~~lL~~a~~~Lk 266 (329)
|+...+ +.++.||+|++-.- +.+.. .....+|+++.++||
T Consensus 107 D~~~~~------------------~~~~~FD~V~s~~~---------------------l~h~~~~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 107 DILKKD------------------FPENTFDMIYSRDA---------------------ILHLSYADKKKLFEKCYKWLK 147 (263)
T ss_pred CcccCC------------------CCCCCeEEEEEhhh---------------------HHhCCHHHHHHHHHHHHHHcC
Confidence 987654 34578999985210 11111 124568999999999
Q ss_pred CCCEEEEEc
Q psy15212 267 PGGKLLFVT 275 (329)
Q Consensus 267 pgG~lvysT 275 (329)
|||+++.+.
T Consensus 148 PGG~lvi~d 156 (263)
T PTZ00098 148 PNGILLITD 156 (263)
T ss_pred CCcEEEEEE
Confidence 999999875
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=106.07 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=83.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.+..++++.....|....+
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----------- 90 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA----------- 90 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-----------
Confidence 34555556679999999999999999985 469999999999999999999888887777777765443
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+ ++.||.|++..+... ... .....+++.+.++|+|||++++.+
T Consensus 91 -------~-~~~fD~I~~~~~~~~-------------~~~-------~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 91 -------L-NEDYDFIFSTVVFMF-------------LQA-------GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred -------c-cCCCCEEEEeccccc-------------CCH-------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1 357999996543210 011 123467899999999999866543
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=103.36 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.+++|++|||+|||+|+.+.+++.... ++|+++|+++.+ ... .++++.+|+.+... ..+.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~--~i~~~~~d~~~~~~~~~l~------- 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIE--NVDFIRGDFTDEEVLNKIR------- 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCC--CceEEEeeCCChhHHHHHH-------
Confidence 467899999999999999999998764 689999999865 111 26677788765320 0000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....+.||+|++|+++...|.+ . ..... -...+..+|..+.+.|+|||+++..
T Consensus 92 ----~~~~~~~~D~V~~~~~~~~~g~~--------~--~~~~~-~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 92 ----ERVGDDKVDVVMSDAAPNISGYW--------D--IDHLR-SIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ----HHhCCCCccEEEcCCCCCCCCCc--------c--ccHHH-HHHHHHHHHHHHHHHccCCCEEEEE
Confidence 01234679999999764333332 1 11111 1234678899999999999999975
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=106.80 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=88.3
Q ss_pred hHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 120 AAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
.+.++...+. +.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.+++|++.+++...+. +.
T Consensus 105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~------~~---- 174 (250)
T PRK00517 105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVY------LP---- 174 (250)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEE------Ec----
Confidence 3444444443 56789999999999998887776433679999999999999999999988731111 11
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+..||.|+++.. ......++..+.+.|||||++++|...
T Consensus 175 --------------~~~~~fD~Vvani~-------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 175 --------------QGDLKADVIVANIL-------------------------ANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred --------------cCCCCcCEEEEcCc-------------------------HHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 01126999997632 012346788999999999999987543
Q ss_pred CCccccHHHHHHHHhhCCCcEEec
Q psy15212 278 LWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.+..+-+...++++ +++.+.
T Consensus 216 ---~~~~~~v~~~l~~~-Gf~~~~ 235 (250)
T PRK00517 216 ---EEQADEVLEAYEEA-GFTLDE 235 (250)
T ss_pred ---HhhHHHHHHHHHHC-CCEEEE
Confidence 23344455555655 566553
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-11 Score=118.26 Aligned_cols=114 Identities=24% Similarity=0.387 Sum_probs=88.6
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
....+.+.++.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.++++....+..+++..+|+...+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~---------- 327 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT---------- 327 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC----------
Confidence 3444556788999999999999999999877779999999999999999988755545889999987654
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+++++||.|++. +++.+.++ ...+|+++.+.|||||+++.++-.
T Consensus 328 --------~~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 328 --------YPDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred --------CCCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 245689999952 22222111 246799999999999999988643
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-12 Score=110.18 Aligned_cols=99 Identities=22% Similarity=0.391 Sum_probs=76.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+++|+.|+||+||-|.+++.+|...+ ..|+|+|+++..++.+++|++.++++ +.++++|++.+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------------- 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------------- 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------------
Confidence 67899999999999999999998555 68999999999999999999999997 789999998875
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
....||.|+++.|-++ .++|..+..++++||.+.|
T Consensus 166 ------~~~~~drvim~lp~~~--------------------------~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 166 ------PEGKFDRVIMNLPESS--------------------------LEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -------TT-EEEEEE--TSSG--------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred ------CccccCEEEECChHHH--------------------------HHHHHHHHHHhcCCcEEEC
Confidence 2578999999999552 2468889999999999877
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=110.31 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.+|.+|||+|||+|..+..+++. +.+|+|+|.++++++.++.+....+. .++++++|+.++.
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-------------- 193 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-------------- 193 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--------------
Confidence 457889999999999999999864 56999999999999999988776554 3788899987654
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+++||+|++ .+++.+ + .-...+|+...++|||||.++++|
T Consensus 194 ----~~~~~FD~Vi~------~~vLeH---------------v-~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 194 ----DEGRKFDAVLS------LEVIEH---------------V-ANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred ----hccCCCCEEEE------hhHHHh---------------c-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 23568999995 222221 1 123468999999999999999886
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=109.18 Aligned_cols=112 Identities=25% Similarity=0.299 Sum_probs=83.0
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC--CceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN--LKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g--~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...+.+.+|.+|||+|||+|..+..++......|+|+|.|+.++...+...+..+ .+++++.+|+..++
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-------- 185 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-------- 185 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC--------
Confidence 34455566789999999999999999998755689999999998876555444333 24788888887765
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. .+.||.|++ .|++.+..+ ...+|+.+.+.|+|||.++++|-
T Consensus 186 ----------~-~~~FD~V~s------~~vl~H~~d----------------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 186 ----------A-LKAFDTVFS------MGVLYHRRS----------------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ----------C-cCCcCEEEE------CChhhccCC----------------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 2 468999994 344432211 23578999999999999998753
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=118.13 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=88.3
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...++..++++|||+.||.|++++++|... .+|+|+|+++..++.+++|++.+|+. +++..+|+..+..
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~-------- 355 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP-------- 355 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh--------
Confidence 3445567788999999999999999999654 49999999999999999999999998 8999999988751
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+.....||.|++|||-+|.+ .++++...++ +| -++||++|
T Consensus 356 -------~~~~~~~~d~VvvDPPR~G~~------------------------~~~lk~l~~~-~p-~~IvYVSC 396 (432)
T COG2265 356 -------AWWEGYKPDVVVVDPPRAGAD------------------------REVLKQLAKL-KP-KRIVYVSC 396 (432)
T ss_pred -------hccccCCCCEEEECCCCCCCC------------------------HHHHHHHHhc-CC-CcEEEEeC
Confidence 111345899999999988763 2345555554 33 35899999
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=106.87 Aligned_cols=109 Identities=26% Similarity=0.339 Sum_probs=76.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+|.+|||+|||+|+.++.++.+...+|+.||.++..++.+++|++..++. ++++..|+...- ..+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l-~~~------------ 108 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL-LKL------------ 108 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH-HHH------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH-Hhh------------
Confidence 68999999999999999998876579999999999999999999999986 789999976542 110
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH--hcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW--KMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~--~~LkpgG~lvysTC 276 (329)
. ....+||+|++|||+-.. .. + .+++.... .+|+++|.+|+-+-
T Consensus 109 ~-~~~~~fDiIflDPPY~~~----------------~~--~----~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 109 A-KKGEKFDIIFLDPPYAKG----------------LY--Y----EELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp H-HCTS-EEEEEE--STTSC----------------HH--H----HHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred c-ccCCCceEEEECCCcccc----------------hH--H----HHHHHHHHHCCCCCCCEEEEEEec
Confidence 0 135789999999997621 10 1 22333333 78999998887643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.3e-12 Score=95.80 Aligned_cols=95 Identities=21% Similarity=0.390 Sum_probs=73.4
Q ss_pred EeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCC
Q psy15212 137 LDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKY 216 (329)
Q Consensus 137 LDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (329)
||+|||+|..+..+++..+..|+++|+++.+++.++++....++ .+..+|+..++ +.++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~------------------~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGV--SFRQGDAEDLP------------------FPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTE--EEEESBTTSSS------------------S-TT-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCc--hheeehHHhCc------------------ccccc
Confidence 89999999999999998347999999999999999998876554 48889988876 46789
Q ss_pred CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 217 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 217 fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
||.|++.- ++. | + ..+.++++++.+.|||||++++
T Consensus 61 fD~v~~~~------~~~------~---------~-~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFSNS------VLH------H---------L-EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEEES------HGG------G---------S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccc------cee------e---------c-cCHHHHHHHHHHHcCcCeEEeC
Confidence 99999531 111 0 1 3366789999999999999974
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=110.62 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=87.9
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
+|...+......+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++.. ...++.+|+..++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~-- 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLP-- 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCc--
Confidence 57777777777776666789999999999999888864 4699999999999999887743 2457788887654
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||.|+++.+ ..|.. ....+|.++.+.|+|||.++++|
T Consensus 99 ----------------~~~~~fD~V~s~~~------------l~~~~----------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 99 ----------------LATATFDLAWSNLA------------VQWCG----------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ----------------CCCCcEEEEEECch------------hhhcC----------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 24568999996532 11211 13467899999999999999986
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=110.58 Aligned_cols=105 Identities=16% Similarity=0.257 Sum_probs=83.0
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
...++++++++|||+|||+|..+..+++..+ +.|+++|+++.+++.++++++++|+. +.++.+|+....
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-------- 144 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-------- 144 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc--------
Confidence 3455688999999999999999999998876 58999999999999999999999987 888899976543
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....||+|+++.... .+.....+.|+|||+++...
T Consensus 145 ----------~~~~~fD~Ii~~~g~~----------------------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 ----------PEFAPYDVIFVTVGVD----------------------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ----------cccCCccEEEECCchH----------------------------HhHHHHHHhcCCCCEEEEEe
Confidence 1235799999874311 12233566799999988753
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=104.42 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=101.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+..+||+|||+|.+++.++..++ +.|+|+|+|+.+++.+.+|++++++. +.+++.++..-...
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~------------- 214 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASD------------- 214 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccc-------------
Confidence 355899999999999999998777 89999999999999999999999986 66665544321100
Q ss_pred ccc-cCCCCCCEEEEccCCccccccc-cCCCCcccCChhHH---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 209 FRF-YKNKYFDRILADLPCTGSGVVR-RNPDIPWLRRKNDI---KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 209 ~~~-~~~~~fD~Vl~D~PCsg~G~~~-~~p~~~~~~~~~~~---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
+. ...+++|.+++||||-..--++ -+|+++.....-.+ ..-......++.-|.++|+|||.+++.+--. .+.
T Consensus 215 -~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~ 291 (328)
T KOG2904|consen 215 -EHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEH 291 (328)
T ss_pred -ccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccC
Confidence 00 2357999999999996443332 25655432211111 1223445677888999999999999986532 344
Q ss_pred HHHHHHHHhh
Q psy15212 284 EEQAIIFSKN 293 (329)
Q Consensus 284 e~vv~~~l~~ 293 (329)
...|..++..
T Consensus 292 ~~lv~~~m~s 301 (328)
T KOG2904|consen 292 SYLVRIWMIS 301 (328)
T ss_pred cHHHHHHHHh
Confidence 4556665543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=115.24 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=67.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..++.+|... .+|+|+|+++..++.+++|++.+++. ++++.+|+.++.
T Consensus 231 ~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~--------------- 294 (374)
T TIGR02085 231 EIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA--------------- 294 (374)
T ss_pred hcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH---------------
Confidence 3457899999999999999999654 69999999999999999999999985 899999987643
Q ss_pred ccccCCCCCCEEEEccCCcc
Q psy15212 209 FRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg 228 (329)
.. ....||.|++|||..|
T Consensus 295 -~~-~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 295 -TA-QMSAPELVLVNPPRRG 312 (374)
T ss_pred -Hh-cCCCCCEEEECCCCCC
Confidence 00 1245999999999754
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=105.89 Aligned_cols=114 Identities=22% Similarity=0.336 Sum_probs=85.3
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
|...+......+.+.++.+|||+|||+|..+..+++..+ ++|+|+|+|+.+++.++++.. .+.++.+|+..+.
T Consensus 16 ~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~-- 89 (258)
T PRK01683 16 RTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQ-- 89 (258)
T ss_pred hhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccC--
Confidence 333333334455677889999999999999999998875 799999999999999987742 2677888876543
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...+||+|+++.... |.. .+..+++.+.+.|||||+++.++
T Consensus 90 -----------------~~~~fD~v~~~~~l~------------~~~----------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -----------------PPQALDLIFANASLQ------------WLP----------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -----------------CCCCccEEEEccChh------------hCC----------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 245899999764311 111 13468999999999999998864
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-11 Score=106.85 Aligned_cols=122 Identities=14% Similarity=0.213 Sum_probs=85.7
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLKATLILSDIS 190 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~ 190 (329)
+..+.++.++.. ...+.+|||+|||+|..++.+++.+. ..|+|+|+++.+++.+++|+. .+.++.+|+.
T Consensus 35 TP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~ 107 (241)
T PHA03412 35 TPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADAL 107 (241)
T ss_pred CCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchh
Confidence 344444444322 22367999999999999999998642 599999999999999998864 2678889987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
... ...+||.|++|||+.-.+. ++...+. + -......+++.|.+++++|+.
T Consensus 108 ~~~-------------------~~~~FDlIIsNPPY~~~~~--~d~~ar~--~------g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 108 TTE-------------------FDTLFDMAISNPPFGKIKT--SDFKGKY--T------GAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccc-------------------ccCCccEEEECCCCCCccc--cccCCcc--c------ccHHHHHHHHHHHHHcCCCEE
Confidence 543 2358999999999986442 1111100 0 122456789999998888776
Q ss_pred EE
Q psy15212 271 LL 272 (329)
Q Consensus 271 lv 272 (329)
++
T Consensus 159 IL 160 (241)
T PHA03412 159 II 160 (241)
T ss_pred Ee
Confidence 55
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-11 Score=114.09 Aligned_cols=112 Identities=23% Similarity=0.245 Sum_probs=86.7
Q ss_pred HHHHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~ 197 (329)
+.+++..+... ++.+|||++||+|..++.+|...+ .+|+++|+++..++.+++|++.+++. ++++.+|+..+.
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---- 120 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---- 120 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH----
Confidence 33444444333 457999999999999999988766 59999999999999999999999997 778999987643
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ....||+|++||| |++ ..+|..|++.+++||.+.+| |+
T Consensus 121 ------------~--~~~~fD~V~lDP~--Gs~------------------------~~~l~~al~~~~~~gilyvS-At 159 (382)
T PRK04338 121 ------------H--EERKFDVVDIDPF--GSP------------------------APFLDSAIRSVKRGGLLCVT-AT 159 (382)
T ss_pred ------------h--hcCCCCEEEECCC--CCc------------------------HHHHHHHHHHhcCCCEEEEE-ec
Confidence 0 1357999999998 332 24688888889998866555 44
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=106.70 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=82.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC--C-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA--D-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~--~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+.++.+|||+|||+|..+..+++.. + ++++|+|+|+.+++.+++++.+++.. ++++.+|+...+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~----------- 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA----------- 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----------
Confidence 3578899999999999999888743 3 79999999999999999999988774 889999987654
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH-HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS-KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~-~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+|.|++.-. +..+. ..+..+++++.+.|||||.++.+.-
T Consensus 123 ---------~~~~D~vv~~~~---------------------l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 123 ---------IENASMVVLNFT---------------------LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred ---------CCCCCEEehhhH---------------------HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 135899885311 11111 1235689999999999999999863
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=108.30 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=79.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...+.+.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.++++ + ++++.+|+..+.
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~---------- 85 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G--VDARTGDVRDWK---------- 85 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C--CcEEEcChhhCC----------
Confidence 3445567889999999999999999998865 6999999999999988653 2 567788886543
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+.||.|++....- |. ..+.++++++.+.|||||+++..
T Consensus 86 ---------~~~~fD~v~~~~~l~------------~~----------~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 86 ---------PKPDTDVVVSNAALQ------------WV----------PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ---------CCCCceEEEEehhhh------------hC----------CCHHHHHHHHHHhCCCCcEEEEE
Confidence 246899999754311 11 11356899999999999999876
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-11 Score=107.84 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=82.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...|+. ++++++|+.++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~--------------- 106 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA--------------- 106 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh---------------
Confidence 45679999999999999999986 469999999999999999999998874 788999987653
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ...+.||+|++.... ..+ .-...+|+.+.++|||||+++...
T Consensus 107 -~-~~~~~fD~V~~~~vl---------------------~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 107 -Q-HLETPVDLILFHAVL---------------------EWV-ADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred -h-hcCCCCCEEEehhHH---------------------Hhh-CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 1 134689999964321 111 112467999999999999997653
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-11 Score=113.21 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=109.1
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC--------CCEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--------DIKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~--------~~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
.|.++--..-+.+++.++.+.++++|+|.|||+|++.+.+.+.. ...++|+|+++..+..++.|+.-.|..
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 36666666777888888899999999999999999999988743 369999999999999999998777764
Q ss_pred --eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc--CCCCcccCChhHHHHHHHHHHHH
Q psy15212 182 --ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR--NPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 182 --v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~--~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
..+..+|..... .......||.||++||.+..+.... ..+.+|..... .-...+..+
T Consensus 105 ~~~~i~~~d~l~~~----------------~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~F 165 (311)
T PF02384_consen 105 SNINIIQGDSLEND----------------KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFP---PKSNAEYAF 165 (311)
T ss_dssp BGCEEEES-TTTSH----------------SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSS---STTEHHHHH
T ss_pred cccccccccccccc----------------ccccccccccccCCCCccccccccccccccccccccCC---Cccchhhhh
Confidence 358888876543 1112468999999999987743111 11223332100 000112347
Q ss_pred HHHHHhcCCCCCEEEEEcCC--CCcc-ccHHHHHHHHhhCCCcEEecCCCcccCC
Q psy15212 258 LNNLWKMLKPGGKLLFVTCS--LWFE-ESEEQAIIFSKNHKDSIRLNSPGQLLPT 309 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS--~~~~-Ene~vv~~~l~~~~~~~~~~~~~~~~p~ 309 (329)
+.++++.|++||++++.+-+ +... ......+.+++.+---.++..|..+++.
T Consensus 166 i~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 166 IEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSS
T ss_pred HHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecc
Confidence 88999999999987766533 2232 2334555666654211234445556654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=113.58 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=88.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..++++.++ .|||++||.|.+|+.+|.... +|+|+|+++.+++.+++|++.+++. ++++.+++.++.. .+. ..
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~-~~~--~~- 263 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAK-ALA--KA- 263 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCC-HHC--CS-
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhH-HHH--hh-
Confidence 445566665 899999999999999997655 9999999999999999999999997 8999888765420 000 00
Q ss_pred ccccccc--ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 204 KTNNRFR--FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 204 ~~~~~~~--~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
..-.+.. ......+|.|++|||-+|.+- .+++.+.+ + .++||..|. |.
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPPR~G~~~------------------------~~~~~~~~-~---~~ivYvSCn--P~ 313 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPPRAGLDE------------------------KVIELIKK-L---KRIVYVSCN--PA 313 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---TT-SCH------------------------HHHHHHHH-S---SEEEEEES---HH
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCCCCCchH------------------------HHHHHHhc-C---CeEEEEECC--HH
Confidence 0000000 012346899999999887642 12222222 2 489999995 32
Q ss_pred ccHHHHHHHHhhCCCcEEecC-CCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 282 ESEEQAIIFSKNHKDSIRLNS-PGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 282 Ene~vv~~~l~~~~~~~~~~~-~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
-=..-+..+ .+ ++++... +...+|++ +..+- ++.|+|+
T Consensus 314 tlaRDl~~L-~~--~y~~~~v~~~DmFP~T---~HvE~--v~lL~rk 352 (352)
T PF05958_consen 314 TLARDLKIL-KE--GYKLEKVQPVDMFPQT---HHVET--VALLERK 352 (352)
T ss_dssp HHHHHHHHH-HC--CEEEEEEEEE-SSTTS---S--EE--EEEEEE-
T ss_pred HHHHHHHHH-hh--cCEEEEEEEeecCCCC---CcEEE--EEEEEeC
Confidence 212222222 22 4554432 23568876 44444 6777664
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=103.40 Aligned_cols=113 Identities=19% Similarity=0.383 Sum_probs=86.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
...+.+.++.+|||+|||+|..+..++...+ ++++++|+++.+++.++++....+..+++...|+...+
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------- 82 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP--------- 82 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC---------
Confidence 3456678899999999999999999998873 79999999999999999984444444788888887654
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||.|+++-. +.. ......+++++.++|+|||.++++.+.
T Consensus 83 ---------~~~~~~D~v~~~~~------~~~----------------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 ---------FPDGSFDAVRSDRV------LQH----------------LEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ---------CCCCCceEEEEech------hhc----------------cCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 24568999996422 110 011345789999999999999988764
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-10 Score=99.60 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=99.0
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEe-cCcccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLIL-SDISKI 192 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~-~D~~~~ 192 (329)
...-.+...++......+||++|++.|.-++.||..++ ++++++|+++++.+.+++|+++.|+. ++++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 55566777777777788999999999999999999887 89999999999999999999999996 67777 587764
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
- .....+.||.|+.|+-=+ .+.+.++.+.++|+|||.+|
T Consensus 125 l----------------~~~~~~~fDliFIDadK~-------------------------~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 125 L----------------SRLLDGSFDLVFIDADKA-------------------------DYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred H----------------HhccCCCccEEEEeCChh-------------------------hCHHHHHHHHHHhCCCcEEE
Confidence 3 111357999999997511 24568999999999999998
Q ss_pred EEcCCCC
Q psy15212 273 FVTCSLW 279 (329)
Q Consensus 273 ysTCS~~ 279 (329)
.-.-.+.
T Consensus 164 ~DNvl~~ 170 (219)
T COG4122 164 ADNVLFG 170 (219)
T ss_pred EeecccC
Confidence 7766655
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=111.86 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=86.3
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
...+...+.+++|++|||+|||+|+.+.++++..+.+|+|+|+|+.+++.++++.+ ++.+++...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-------- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-------- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc--------
Confidence 34455566788999999999999999999998777899999999999999999885 44567777776543
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
++.||.|++- +++.+-+. .....+++.+.++|||||+++..+.+
T Consensus 226 -------------~~~fD~Ivs~------~~~ehvg~--------------~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 -------------NGQFDRIVSV------GMFEHVGP--------------KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred -------------CCCCCEEEEe------CchhhCCh--------------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 2579999852 22211110 11245789999999999999987643
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=99.42 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=82.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
-.|.+|||++||+|+.++.++.+....++.+|.|...++.+++|++.+++. ++++.+|+.... +.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L-~~------------ 108 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL-KQ------------ 108 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH-Hh------------
Confidence 468999999999999999999886689999999999999999999999964 889999988542 10
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH-HHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI-LNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpgG~lvysT 275 (329)
.-..+.||.|++|||+- .|. ...+..+ +-.-..+|+|+|.+|.-+
T Consensus 109 --~~~~~~FDlVflDPPy~-~~l-------------------~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 109 --LGTREPFDLVFLDPPYA-KGL-------------------LDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred --cCCCCcccEEEeCCCCc-cch-------------------hhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 01123599999999976 221 1111222 222456799999888543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=114.96 Aligned_cols=126 Identities=14% Similarity=0.213 Sum_probs=90.1
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+++..+|.+|||+|||+|..+..+++..+ ++++|+|+|+.+++.++++....+..+.++.+|+..++
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp------------ 480 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS------------ 480 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc------------
Confidence 44555788999999999999999988766 79999999999999999998777766888889987654
Q ss_pred cccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..+.++.||.|++.++--.. ..+. .....| . .....++|+.+.+.|||||+++.+.-++
T Consensus 481 ----~~fedeSFDvVVsn~vLH~L~syIp-~~g~~f--~-------~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 481 ----SSFEKESVDTIVYSSILHELFSYIE-YEGKKF--N-------HEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred ----cccCCCCEEEEEEchHHHhhhhhcc-cccccc--c-------HHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 22356789999975431100 0000 000001 1 1234678999999999999999875433
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=100.39 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=106.2
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKL 197 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~ 197 (329)
++...++......+||++|++.|.-|+++|+.++ ++|+++|+++.+.+.+++++++.|+. ++++.+|+.+.- +.+
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l-~~l 113 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL-PEL 113 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH-HHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH-HHH
Confidence 3444444333446999999999999999998876 89999999999999999999999995 899999998752 111
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. .....+.||.|++|+.=+ .+...++.+.++|+|||.++.-..-
T Consensus 114 ~-----------~~~~~~~fD~VFiDa~K~-------------------------~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 114 A-----------NDGEEGQFDFVFIDADKR-------------------------NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp H-----------HTTTTTSEEEEEEESTGG-------------------------GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred H-----------hccCCCceeEEEEccccc-------------------------chhhHHHHHhhhccCCeEEEEcccc
Confidence 1 001135899999998611 1345677888999999999987655
Q ss_pred CCc------cccHH--HHHHH---HhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 278 LWF------EESEE--QAIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 278 ~~~------~Ene~--vv~~~---l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
+.. .++.. .+..| +.++|.+..+- +| -+||..+++
T Consensus 158 ~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~l-----lp------igdGl~l~~ 203 (205)
T PF01596_consen 158 WRGSVADPDDEDPKTVAIREFNEYIANDPRFETVL-----LP------IGDGLTLAR 203 (205)
T ss_dssp GGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEE-----EC------STTEEEEEE
T ss_pred ccceecCccchhhhHHHHHHHHHHHHhCCCeeEEE-----EE------eCCeeEEEE
Confidence 432 12222 23344 44567765443 33 458888775
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-11 Score=93.76 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=74.8
Q ss_pred EEeecCCCchHHHHHHHhC--C--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA--D--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~--~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
|||+|||+|..+..+++.. + .+++++|+|+.+++.++++....+.+++++++|+.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~------------------ 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP------------------ 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc------------------
Confidence 7999999999999999886 2 69999999999999999999988888999999998865
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
...++||.|++ ++. ++. + .+++ .+..++++..++|+|||
T Consensus 63 ~~~~~~D~v~~----~~~-~~~------~-~~~~-------~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 FSDGKFDLVVC----SGL-SLH------H-LSPE-------ELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHSSSEEEEEE-----TT-GGG------G-SSHH-------HHHHHHHHHHHTEEEEE
T ss_pred ccCCCeeEEEE----cCC-ccC------C-CCHH-------HHHHHHHHHHHHhCCCC
Confidence 23569999995 211 111 1 1222 25678999999999998
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=123.12 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=113.3
Q ss_pred cceEEEechhHHHHhhhcCCC-----CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC----
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIR-----SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL---- 180 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~-----~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~---- 180 (329)
.|-++..+.+-.++-. |... ++.+|||+|||+|..++.+++..+ .+|+|+|+|+.+++.+++|++++++
T Consensus 93 p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~ 171 (1082)
T PLN02672 93 PSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDG 171 (1082)
T ss_pred CCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccc
Confidence 3555556655555544 4322 246899999999999999998876 7999999999999999999998643
Q ss_pred -------------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc-CCCCc-------
Q psy15212 181 -------------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR-NPDIP------- 239 (329)
Q Consensus 181 -------------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~-~p~~~------- 239 (329)
+++++++|..... .. ...+||+|+.+||+-..+-+.. .|+++
T Consensus 172 ~~~~~~~~~~l~~rV~f~~sDl~~~~----------------~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~ 234 (1082)
T PLN02672 172 LPVYDGEGKTLLDRVEFYESDLLGYC----------------RD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEF 234 (1082)
T ss_pred ccccccccccccccEEEEECchhhhc----------------cc-cCCceEEEEECCCcCCCcchhhcChhhhhcccccc
Confidence 2788999986542 00 1136999999999977664322 22222
Q ss_pred -ccCC-hhHH------HHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcE
Q psy15212 240 -WLRR-KNDI------KKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 240 -~~~~-~~~~------~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
+..+ ...+ ..-....++++..+.++|+|||.+++ -+.....+.+.+.++++. ++.
T Consensus 235 ~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~~~-gf~ 297 (1082)
T PLN02672 235 LYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFERR-GFR 297 (1082)
T ss_pred ccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHHHC-CCC
Confidence 1000 0000 22345678899999999999999985 455666666664555554 343
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=100.57 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=67.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|.+|||+|||+|+.++.++.+...+|+++|.++..++.+++|++.+++. ++++.+|+.... ..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l-~~------------- 114 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL-KF------------- 114 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH-HH-------------
Confidence 58899999999999999999875579999999999999999999999985 789999986542 00
Q ss_pred ccc-CCCCCCEEEEccCCc
Q psy15212 210 RFY-KNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~-~~~~fD~Vl~D~PCs 227 (329)
.. ....||+|++|||+.
T Consensus 115 -~~~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 115 -LAKKPTFDNVIYLDPPFF 132 (189)
T ss_pred -hhccCCCceEEEECcCCC
Confidence 01 123589999999986
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=112.51 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc-cccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN-NRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~-~~~~ 210 (329)
+.+|||+|||+|..++.++... .+|+|+|+++.+++.+++|++.+|+. ++++.+|+.++. +.+. .....+ ....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l-~~~~--~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT-QAMN--GVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH-HHHh--hcccccccccc
Confidence 3579999999999999998765 49999999999999999999999996 899999987642 1110 000000 0000
Q ss_pred ccCCCCCCEEEEccCCcc
Q psy15212 211 FYKNKYFDRILADLPCTG 228 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg 228 (329)
.....+||.|++|||.+|
T Consensus 283 ~~~~~~~D~v~lDPPR~G 300 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAG 300 (362)
T ss_pred cccCCCCCEEEECCCCCC
Confidence 000225999999999764
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=108.88 Aligned_cols=141 Identities=21% Similarity=0.247 Sum_probs=105.9
Q ss_pred ccceEEEechhHHHHhhhc---------CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 110 FNGFCSIQDAAAQLAAPLL---------DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 110 ~~G~~~~Qd~~s~l~~~~l---------~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
.+|..+-.|.+......-+ ...+|++|+||+||-|.+|+.+|.....+|+|+|+|+..++.+++|++.+++
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v 236 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV 236 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc
Confidence 4577777888753332222 2567999999999999999999987665699999999999999999999999
Q ss_pred c--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 181 K--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 181 ~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
. +..+++|++... .....||.|++.-|-+ ..+++
T Consensus 237 ~~~v~~i~gD~rev~------------------~~~~~aDrIim~~p~~--------------------------a~~fl 272 (341)
T COG2520 237 EGRVEPILGDAREVA------------------PELGVADRIIMGLPKS--------------------------AHEFL 272 (341)
T ss_pred cceeeEEeccHHHhh------------------hccccCCEEEeCCCCc--------------------------chhhH
Confidence 7 789999999876 1226799999988844 34579
Q ss_pred HHHHhcCCCCCEEEEEcCCCCcc---ccHHHHHHHHhhC
Q psy15212 259 NNLWKMLKPGGKLLFVTCSLWFE---ESEEQAIIFSKNH 294 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~~~~---Ene~vv~~~l~~~ 294 (329)
..|.+.+++||.+.|-+-.-... ..+..+..+..+.
T Consensus 273 ~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 273 PLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred HHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 99999999999887754321111 1335555555444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=96.64 Aligned_cols=84 Identities=26% Similarity=0.403 Sum_probs=61.6
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..|+|+|||.||-++++|.... +|+|+|+++.+++.+++|++-+|+. ++++++|..+.. ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~----------------~~ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL----------------KR 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG----------------GG
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH----------------hh
Confidence 3699999999999999998755 9999999999999999999999985 999999998754 11
Q ss_pred cC-CCCCCEEEEccCCcccccccc
Q psy15212 212 YK-NKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 212 ~~-~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.. ...||.|+++||-.|....++
T Consensus 64 ~~~~~~~D~vFlSPPWGGp~Y~~~ 87 (163)
T PF09445_consen 64 LKSNKIFDVVFLSPPWGGPSYSKK 87 (163)
T ss_dssp B------SEEEE---BSSGGGGGS
T ss_pred ccccccccEEEECCCCCCcccccc
Confidence 11 122899999999988777654
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-10 Score=103.54 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=80.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++.+++...|+....
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~------------------ 180 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS------------------ 180 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc------------------
Confidence 3459999999999999999985 469999999999999999999998888888888876543
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+++||.|++...+. . ... .....+++.+.+.|+|||++++.
T Consensus 181 -~~~~fD~I~~~~vl~------~-------l~~-------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 -IQEEYDFILSTVVLM------F-------LNR-------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred -ccCCccEEEEcchhh------h-------CCH-------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 246899999643211 0 011 12346889999999999996653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-10 Score=109.71 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=65.5
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccc--ccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKT--NNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~--~~~~~ 210 (329)
.+|||+|||+|.+++.++.... +|+|+|+++.+++.+++|++.+|+. ++++.+|+.++. .... ..... .....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~-~~~~--~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT-QAMN--GVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH-HHHh--hccccccccccc
Confidence 4799999999999999998764 9999999999999999999999996 899999987653 1100 00000 00000
Q ss_pred ccCCCCCCEEEEccCCcc
Q psy15212 211 FYKNKYFDRILADLPCTG 228 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg 228 (329)
.....||.|++|||-+|
T Consensus 275 -~~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 275 -LKSYNCSTIFVDPPRAG 291 (353)
T ss_pred -cccCCCCEEEECCCCCC
Confidence 00124899999999654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-10 Score=95.09 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=69.2
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+..+++.++++|||+|||+|..+..+++. +.+|+++|+++.+++.+++++... -+++++++|+.+..
T Consensus 6 ~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~----------- 72 (169)
T smart00650 6 VRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFD----------- 72 (169)
T ss_pred HHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCC-----------
Confidence 34556778899999999999999999987 469999999999999999998652 24789999998865
Q ss_pred ccccccccCCCCCCEEEEccCCc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
..+..||.|+.|+|+.
T Consensus 73 -------~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 73 -------LPKLQPYKVVGNLPYN 88 (169)
T ss_pred -------ccccCCCEEEECCCcc
Confidence 2334699999999975
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-10 Score=97.59 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=102.0
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|-|.+-.++...+|.-..-.++||+|||.|..|.+||.+.. .++++|+++..++.+++++.... .|++.+.|.....
T Consensus 25 ~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 25 WYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLP-HVEWIQADVPEFW 102 (201)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT--
T ss_pred HHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCC
Confidence 344544444444344434446899999999999999999875 99999999999999999997542 3899999986643
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCCh-hHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRK-NDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~-~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+.++||+|++ | ++.+..+. ++ ...++......|+|||.||
T Consensus 103 -------------------P~~~FDLIV~----S---------EVlYYL~~~~~-------L~~~l~~l~~~L~pgG~LV 143 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----S---------EVLYYLDDAED-------LRAALDRLVAALAPGGHLV 143 (201)
T ss_dssp --------------------SS-EEEEEE----E---------S-GGGSSSHHH-------HHHHHHHHHHTEEEEEEEE
T ss_pred -------------------CCCCeeEEEE----e---------hHhHcCCCHHH-------HHHHHHHHHHHhCCCCEEE
Confidence 5689999994 3 33344443 33 3456788888999999999
Q ss_pred EEc-----CC--CCccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 273 FVT-----CS--LWFEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 273 ysT-----CS--~~~~Ene~vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
..+ |+ -|+. ..+-|..+++++ -.++.+... +. ...+++.+|+|+|.
T Consensus 144 ~g~~rd~~c~~wgh~~-ga~tv~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 144 FGHARDANCRRWGHAA-GAETVLEMLQEHLTEVERVECR-----GG---SPNEDCLLARFRNP 197 (201)
T ss_dssp EEEE-HHHHHHTT-S---HHHHHHHHHHHSEEEEEEEEE------S---STTSEEEEEEEE--
T ss_pred EEEecCCcccccCccc-chHHHHHHHHHHhhheeEEEEc-----CC---CCCCceEeeeecCC
Confidence 975 33 2233 444445555443 233333221 11 45679999999885
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=98.90 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=80.6
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
++|||+|||+|+.+..+++..+ .+|+++|+|+..++.+++++...|+. ++++..|+...+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~----------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP----------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----------------
Confidence 3799999999999999998875 79999999999999999999998875 788888875533
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.||+|++ .+++. . ......+++.+.++|||||+++.++.
T Consensus 64 --~~~~fD~I~~------~~~l~---------------~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 --FPDTYDLVFG------FEVIH---------------H-IKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred --CCCCCCEeeh------HHHHH---------------h-CCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1357999983 11111 1 11235689999999999999998753
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=108.69 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=88.0
Q ss_pred echhHHHHhhhcCCCCC---CeEEeecCCCchHHHHHHHhC-C-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCcc
Q psy15212 117 QDAAAQLAAPLLDIRSG---MYVLDACSAPGGKTCHLLEIA-D-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDIS 190 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g---~~VLDlcag~G~kt~~la~~~-~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~ 190 (329)
.|.+-..+..+.....+ -+|||++||+|..++.++... + .+|+++|+++..++.+++|++.+++. +++++.|+.
T Consensus 26 RDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~ 105 (374)
T TIGR00308 26 RDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA 105 (374)
T ss_pred ccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH
Confidence 34444333333333333 489999999999999999875 3 69999999999999999999999987 889999988
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
.+. .. ...+||+|.+||+-+ . ..+|..|.+.+++||.
T Consensus 106 ~~l----------------~~-~~~~fDvIdlDPfGs--~------------------------~~fld~al~~~~~~gl 142 (374)
T TIGR00308 106 NVL----------------RY-RNRKFHVIDIDPFGT--P------------------------APFVDSAIQASAERGL 142 (374)
T ss_pred HHH----------------HH-hCCCCCEEEeCCCCC--c------------------------HHHHHHHHHhcccCCE
Confidence 753 11 135799999999622 1 2478999999999985
Q ss_pred EEEEcCC
Q psy15212 271 LLFVTCS 277 (329)
Q Consensus 271 lvysTCS 277 (329)
|. .|||
T Consensus 143 L~-vTaT 148 (374)
T TIGR00308 143 LL-VTAT 148 (374)
T ss_pred EE-EEec
Confidence 54 4444
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=98.37 Aligned_cols=106 Identities=16% Similarity=0.318 Sum_probs=81.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+.++.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++++..+. .++++.+|+...+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------- 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------
Confidence 3577899999999999999999864 26999999999999999999988765 3789999988764
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...+|.|++.-. +. |. .. .....+++++.+.|+|||.++.+.
T Consensus 120 ---------~~~~d~v~~~~~------l~------~~-~~-------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 ---------IKNASMVILNFT------LQ------FL-PP-------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ---------CCCCCEEeeecc------hh------hC-CH-------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 135898874221 10 10 11 113468999999999999999874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=95.87 Aligned_cols=115 Identities=24% Similarity=0.408 Sum_probs=87.4
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLY 198 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~ 198 (329)
.....+.+.++.+|||+|||+|..+..++...+ .+++++|+++.+++.+++++...+.. +.++.+|+....
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----- 116 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP----- 116 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-----
Confidence 344455566788999999999999999998875 79999999999999999998876553 788888887654
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+.||+|++.- ++...+ ....+|+.+.++|+|||.+++++-+
T Consensus 117 -------------~~~~~~D~I~~~~------~l~~~~----------------~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 117 -------------FPDNSFDAVTIAF------GLRNVP----------------DIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred -------------CCCCCccEEEEec------ccccCC----------------CHHHHHHHHHHhccCCcEEEEEEec
Confidence 2346899998521 111111 1245788999999999999887544
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=83.15 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=80.1
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
+|+|+|||+|..+..++.....+++++|+++..++.++++....+.. ++++..|..+.. . ..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP----------------P-EA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc----------------c-cc
Confidence 58999999999999998733379999999999999988655444443 788888887754 1 13
Q ss_pred CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 214 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...||.|+++++|... ...+..+++.+.+.+++||.++++
T Consensus 64 ~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4689999999998742 223567889999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=99.53 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=83.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C----ceEEEecCccccchhhhhhhhccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L----KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~----~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...+|||+|||.|+.+..+++..+ .+|+++|+++..++.+++.+...+ . +++++.+|+..+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l----------- 144 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV----------- 144 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH-----------
Confidence 456999999999999999987644 699999999999999999987642 2 2789999998753
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. ..++||+|++|.+-. .| | . ..+ ...++++.+.+.|+|||.++.-+-+
T Consensus 145 -----~~-~~~~yDvIi~D~~dp-~~-----~-------~---~~l--~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 145 -----AE-TENSFDVIIVDSTDP-VG-----P-------A---EGL--FTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred -----hh-CCCcccEEEECCCCC-CC-----c-------h---hhh--hHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 11 246899999996411 00 0 0 011 2357888899999999998875433
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.8e-10 Score=100.66 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-------eEEEecCccccchhhhhhhhc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-------ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-------v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+..|.+|||+|||.|-.+.+||.+ ++.|+|+|.++.+++.+++.....-.. +++.+.|+....
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--------- 156 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--------- 156 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---------
Confidence 445788999999999999999974 579999999999999999983322111 223334433322
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.||.|+| | ++.++.+...+++...+++|||||+|+.+|-
T Consensus 157 ------------~~fDaVvc----s------------------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 157 ------------GKFDAVVC----S------------------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred ------------cccceeee----H------------------HHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 46999994 2 3444444456799999999999999999863
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-09 Score=96.56 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=91.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.++.+|||+|+|.|..+..+++..+ .+|+++|+++..++.+++++...+. +++++.+|+..+-
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l-------------- 130 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI-------------- 130 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH--------------
Confidence 3456899999999999999998876 7999999999999999999865543 3889999988753
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
.. ..++||+|++|+- .+.+. |. +. ...++++.+.+.|+|||.++.-..+-.+ .....+
T Consensus 131 --~~-~~~~yD~I~~D~~-~~~~~----~~--~l-----------~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l 188 (262)
T PRK04457 131 --AV-HRHSTDVILVDGF-DGEGI----ID--AL-----------CTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYL 188 (262)
T ss_pred --Hh-CCCCCCEEEEeCC-CCCCC----cc--cc-----------CcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHH
Confidence 11 2358999999963 22221 11 00 1257899999999999999885443222 223445
Q ss_pred HHHHhhCC
Q psy15212 288 IIFSKNHK 295 (329)
Q Consensus 288 ~~~l~~~~ 295 (329)
+.+-+.++
T Consensus 189 ~~l~~~F~ 196 (262)
T PRK04457 189 ERLESSFE 196 (262)
T ss_pred HHHHHhcC
Confidence 54444443
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-10 Score=106.33 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=115.8
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHH-------HHHHHHHHcCCc---eEEEecC
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLN-------MISENLKRLNLK---ATLILSD 188 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~-------~l~~n~~~~g~~---v~~~~~D 188 (329)
.-|.+.+....++||+.|.|.+.|+|+.....|. .|+.|+|-||+-.++. ..+.|++++|.. ..++.+|
T Consensus 195 eLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 195 ELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred hHHHHHhhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 3366667777799999999999999999888886 5679999999988777 478899999975 6789999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC---CCCccc--------CChhHHHHHHHHHHHH
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN---PDIPWL--------RRKNDIKKLSKYSCKI 257 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~---p~~~~~--------~~~~~~~~l~~~q~~l 257 (329)
..+.+ +.....||.|+||||+.----.++. -..+.. ........+..+...+
T Consensus 274 ~sn~~-----------------~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dl 336 (421)
T KOG2671|consen 274 FSNPP-----------------LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDL 336 (421)
T ss_pred ccCcc-----------------hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhH
Confidence 98875 3346789999999998522111111 111100 0112344666777889
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEe
Q psy15212 258 LNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
|.-+++.|..||++|+ +.|.-+|+.....+-.|+.+.++
T Consensus 337 l~fss~~L~~ggrlv~----w~p~~~e~~~~~~~P~h~~lsl~ 375 (421)
T KOG2671|consen 337 LCFSSRRLVDGGRLVF----WLPTITEEYGEDDIPSHPYLSLI 375 (421)
T ss_pred HHhhHhhhhcCceEEE----ecCchhhccCcccCCCCcchhhh
Confidence 9999999999999995 34566666666666666666544
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=94.51 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=82.2
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
.....|.+. .+++.-++.++||+|||.|.-++.+|++ |-.|+|+|+|+..++.+++..++.+++++....|.....
T Consensus 15 ~~~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-- 90 (192)
T PF03848_consen 15 LTPTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-- 90 (192)
T ss_dssp B----HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--
T ss_pred CCCCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc--
Confidence 334445544 3445445669999999999999999985 559999999999999999999999999999999987765
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.++.||.|++. .++.. . .++. ..++++..-+.++|||++++.|
T Consensus 91 -----------------~~~~yD~I~st------~v~~f------L-~~~~-------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 -----------------FPEEYDFIVST------VVFMF------L-QREL-------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ------------------TTTEEEEEEE------SSGGG------S--GGG-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred -----------------ccCCcCEEEEE------EEecc------C-CHHH-------HHHHHHHHHhhcCCcEEEEEEE
Confidence 23679999842 22211 1 1111 2346777788899999999854
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-10 Score=100.54 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=87.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhhhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~ 201 (329)
+....|+.|++|||.|.|-|..++..+++...+|+.+|.++.-++.+.-|--..++. ++++.+|+.+.-
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-------- 198 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-------- 198 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH--------
Confidence 345567889999999999999999998865469999999999999888775444442 689999998764
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+.+++||.||-|||-.+. .. ++. -.++-++.+++|||||+|+--
T Consensus 199 --------~~~~D~sfDaIiHDPPRfS~-------------Ag-eLY-----seefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 199 --------KDFDDESFDAIIHDPPRFSL-------------AG-ELY-----SEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred --------hcCCccccceEeeCCCccch-------------hh-hHh-----HHHHHHHHHHHcCcCCcEEEE
Confidence 33567899999999994321 11 111 235778888999999988743
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=98.58 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=90.8
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~ 197 (329)
...+...++..++.+|||+|||+|..+..+++..+ .+++++|. +..++.+++++++.|+. ++++.+|+.+..
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---- 212 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----
Confidence 34445556677889999999999999999999887 79999997 78999999999999985 889999987643
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ..+|.|++ + +++. .+..+ .-.++|+++.+.|+|||+++.....
T Consensus 213 --------------~--~~~D~v~~----~--~~lh-------~~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 213 --------------Y--PEADAVLF----C--RILY-------SANEQ-------LSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred --------------C--CCCCEEEe----E--hhhh-------cCChH-------HHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1 23798874 1 1111 11111 1246899999999999999887654
Q ss_pred CCcccc
Q psy15212 278 LWFEES 283 (329)
Q Consensus 278 ~~~~En 283 (329)
+...++
T Consensus 257 ~~~~~~ 262 (306)
T TIGR02716 257 IDDPEN 262 (306)
T ss_pred cCCCCC
Confidence 444333
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-09 Score=99.05 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=81.5
Q ss_pred CCCeEEeecCCCchHHHHHHH--hCC-CEEEEEeCChhHHHHHHHHHHH-cCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLE--IAD-IKLISVDNNLSRLNMISENLKR-LNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~--~~~-~~v~avD~~~~rl~~l~~n~~~-~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
++++|+|+|||||+.|..++. +.+ ++++++|+++.+++.+++++++ .|+. +++..+|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~------------ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT------------ 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc------------
Confidence 668999999999987666543 344 7999999999999999999965 7774 899999998753
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ..+.||+|++++ +-+ |. .+.+.++|++..+.|+|||.+++-+
T Consensus 191 ----~--~l~~FDlVF~~A-Li~-----------~d---------k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 ----E--SLKEYDVVFLAA-LVG-----------MD---------KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ----c--ccCCcCEEEEec-ccc-----------cc---------cccHHHHHHHHHHhcCCCcEEEEec
Confidence 1 136799999873 110 10 0125678999999999999999886
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.5e-09 Score=91.15 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=101.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
+++|..|+|+||+|||.+-.+++.++ +.|+|+|+.+-..- . .+.++.+|++.... ..+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~--------~--~V~~iq~d~~~~~~~~~l~-------- 104 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI--------P--GVIFLQGDITDEDTLEKLL-------- 104 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC--------C--CceEEeeeccCccHHHHHH--------
Confidence 46799999999999999999999887 57999999765431 1 17889999887541 1110
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
..+....+|+|++|+----+|.. ... ......+-...++-|...|+|||.++ |.....++++.
T Consensus 105 ---~~l~~~~~DvV~sD~ap~~~g~~--------~~D---h~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~ 167 (205)
T COG0293 105 ---EALGGAPVDVVLSDMAPNTSGNR--------SVD---HARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFED 167 (205)
T ss_pred ---HHcCCCCcceEEecCCCCcCCCc--------ccc---HHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHH
Confidence 12234568999999875545542 111 12222233445677888999999998 45666777777
Q ss_pred HHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 287 v~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
+-+.++++-......- |...+....+=|++++..|.
T Consensus 168 ~l~~~~~~F~~v~~~K-----P~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 168 LLKALRRLFRKVKIFK-----PKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred HHHHHHHhhceeEEec-----CccccCCCceEEEEEecccc
Confidence 6677766522222211 22222244577888876554
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-10 Score=89.22 Aligned_cols=97 Identities=27% Similarity=0.337 Sum_probs=60.6
Q ss_pred EeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 137 LDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 137 LDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
||+|||+|..+..+++..+ .+++++|+|+.+++.+++++...+.. ...+..+..+.. .....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF----------------DYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-------------------CCC-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh----------------hcccc
Confidence 7999999999999999876 79999999999999999999988754 344443333322 11123
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
++||.|++- +++.+- +....+|+++.++|+|||+|
T Consensus 65 ~~fD~V~~~------~vl~~l----------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVAS------NVLHHL----------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-------TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhh------hhHhhh----------------hhHHHHHHHHHHHcCCCCCC
Confidence 589999942 332211 22347899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=90.79 Aligned_cols=120 Identities=24% Similarity=0.334 Sum_probs=89.2
Q ss_pred CeEEeecCCCchHHHHHHHhC-CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~-~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
++|||+|||.|.....|++.. .+.++++|.|+..++.++...++.|.+ +++.+.|.....
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~----------------- 131 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD----------------- 131 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-----------------
Confidence 399999999999999998742 268999999999999999999999997 899999988765
Q ss_pred ccCCCCCCEEEEccCCccccccc---cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVR---RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~---~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
+..++||+|+ --|++. -+|+-.-.+ . .-.+...-++|+|||++|+..|-+...|-.+.+
T Consensus 132 -~~~~qfdlvl------DKGT~DAisLs~d~~~~r----~-------~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 132 -FLSGQFDLVL------DKGTLDAISLSPDGPVGR----L-------VVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred -ccccceeEEe------ecCceeeeecCCCCcccc----e-------eeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 3457888887 233332 233321110 0 123566677899999999999998887554443
Q ss_pred H
Q psy15212 288 I 288 (329)
Q Consensus 288 ~ 288 (329)
+
T Consensus 194 ~ 194 (227)
T KOG1271|consen 194 E 194 (227)
T ss_pred h
Confidence 3
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.8e-09 Score=93.98 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=86.8
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+....+.+.++.+|||+|||+|..+..+++. +.+++++|+++..++.+++++...+..+.++..|+....
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 108 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA--------- 108 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh---------
Confidence 4444445667889999999999999999875 468999999999999999999888777777777776543
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...+.||+|++.-... ..++ ...+|+.+.++|+|||+++.+++.
T Consensus 109 -------~-~~~~~fD~Ii~~~~l~------~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 109 -------A-EHPGQFDVVTCMEMLE------HVPD----------------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred -------h-hcCCCccEEEEhhHhh------ccCC----------------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 1 1246899999632211 1111 235789999999999999988764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=94.35 Aligned_cols=111 Identities=22% Similarity=0.168 Sum_probs=82.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-----ceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-----KATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-----~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+||++|+|.|+.+..+++..+ .+++++|+++..++.+++++...+. .++++.+|+...-
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l------------- 139 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL------------- 139 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-------------
Confidence 45999999999999988887654 6899999999999999998866431 2678888887643
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.. ..++||+|++|++.. .+. . . .+ ...++++.+.+.|+|||.++..+++-
T Consensus 140 ---~~-~~~~yDvIi~D~~~~-~~~-----~-------~---~l--~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 140 ---AD-TENTFDVIIVDSTDP-VGP-----A-------E---TL--FTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred ---Hh-CCCCccEEEEeCCCC-CCc-----c-------c---ch--hHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 11 246899999998732 111 0 0 01 12467888899999999999887653
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-09 Score=95.89 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=72.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
..+|.+++|..++|++||.||.|..+++..+ ++|+|+|.++.+++.+++++.. .-.++++++|+.++.
T Consensus 12 l~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~--------- 81 (296)
T PRK00050 12 VDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK--------- 81 (296)
T ss_pred HHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH---------
Confidence 4456688999999999999999999999875 7999999999999999999876 334899999998864
Q ss_pred ccccccccccCC--CCCCEEEEccCCccc
Q psy15212 203 KKTNNRFRFYKN--KYFDRILADLPCTGS 229 (329)
Q Consensus 203 ~~~~~~~~~~~~--~~fD~Vl~D~PCsg~ 229 (329)
..... ..+|.|++|.=+|+.
T Consensus 82 -------~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 82 -------EVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred -------HHHHcCCCccCEEEECCCcccc
Confidence 11111 279999999888766
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=90.21 Aligned_cols=112 Identities=26% Similarity=0.423 Sum_probs=84.0
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
...+...++.+|||+|||+|..+..+++..+ ++++++|+++..++.++++.. ....++++.+|+.+..
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~--------- 101 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP--------- 101 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC---------
Confidence 3344455789999999999999999998776 599999999999999999876 2223788888887754
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||+|++.- .+...+ + -..+|+.+.++|+|||+++..+.+
T Consensus 102 ---------~~~~~~D~i~~~~------~~~~~~---------~-------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 102 ---------FEDNSFDAVTIAF------GLRNVT---------D-------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ---------CCCCcEEEEEEee------eeCCcc---------c-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 2346899998521 111100 1 235789999999999999987654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=95.02 Aligned_cols=152 Identities=22% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.++.+|||+||||||++..++++.+ ++|+|+|+.+. ...+ +..+.+|..+..... .+ .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~-~i--~---- 82 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIK-DI--R---- 82 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSH-HG--G----
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHH-hh--h----
Confidence 33458999999999999999999883 79999999877 1122 555567765532100 00 0
Q ss_pred ccccccC--CCCCCEEEEcc--CCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 207 NRFRFYK--NKYFDRILADL--PCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 207 ~~~~~~~--~~~fD~Vl~D~--PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
.... .+.||+|++|. +|+|... .+.....++....|.-|.+.|++||.+|.-+-. ..+
T Consensus 83 ---~~~~~~~~~~dlv~~D~~~~~~g~~~-------------~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~--~~~ 144 (181)
T PF01728_consen 83 ---KLLPESGEKFDLVLSDMAPNVSGDRN-------------IDEFISIRLILSQLLLALELLKPGGTFVIKVFK--GPE 144 (181)
T ss_dssp ---GSHGTTTCSESEEEE-------SSHH-------------SSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS--STT
T ss_pred ---hhccccccCcceeccccccCCCCchh-------------hHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc--Ccc
Confidence 1111 26899999998 4443211 112222344555666888899999998865443 223
Q ss_pred cHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 283 SEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
.++++..+-..+..+..+. |...+....+-|++|+
T Consensus 145 ~~~~~~~l~~~F~~v~~~K------p~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 145 IEELIYLLKRCFSKVKIVK------PPSSRSESSEEYLVCR 179 (181)
T ss_dssp SHHHHHHHHHHHHHEEEEE-------TTSBTTCBEEEEESE
T ss_pred HHHHHHHHHhCCeEEEEEE------CcCCCCCccEEEEEEc
Confidence 3455555444332333333 2222224556666653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=100.45 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..+..+++..+ .+++++|+++.+++.++++.... .++++.+|+...+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~i~gD~e~lp---------------- 173 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECKIIEGDAEDLP---------------- 173 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--CCeEEeccHHhCC----------------
Confidence 4678999999999999999988765 69999999999999999886532 2677889987654
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.++.||+|++.. ++..-++ ...+|+++.++|||||++++.
T Consensus 174 --~~~~sFDvVIs~~------~L~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 174 --FPTDYADRYVSAG------SIEYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred --CCCCceeEEEEcC------hhhhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 2456899999632 1211111 234799999999999998875
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=95.44 Aligned_cols=101 Identities=29% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+.+|||+|||+|..+..+++..+ .+++++|+++.+++.+++++.. .+.++.+|+...+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~----------------- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLP----------------- 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCC-----------------
Confidence 356899999999999999998876 6899999999999988877642 4678888887654
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||+|+++-... |. .-..++|+.+.++|+|||.+++++
T Consensus 94 -~~~~~fD~vi~~~~l~------------~~----------~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 94 -LEDSSFDLIVSNLALQ------------WC----------DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -CCCCceeEEEEhhhhh------------hc----------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 2456899999754321 11 012357899999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-09 Score=93.38 Aligned_cols=125 Identities=12% Similarity=0.061 Sum_probs=93.4
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
....++...++....-.+||++|++.|.-|+.+|..++ ++|+++|.++++.+.+++++++.|+. ++++.+|+.+.-
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 44455555555555556999999999999999998775 89999999999999999999999985 899999987742
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
+.+.- .....++||.|++|+-= ......++.+.++|+|||.++.
T Consensus 145 -~~l~~----------~~~~~~~fD~iFiDadK-------------------------~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 145 -DQMIE----------DGKYHGTFDFIFVDADK-------------------------DNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred -HHHHh----------ccccCCcccEEEecCCH-------------------------HHhHHHHHHHHHhcCCCeEEEE
Confidence 11100 00012589999999740 1134567778899999999887
Q ss_pred EcCCC
Q psy15212 274 VTCSL 278 (329)
Q Consensus 274 sTCS~ 278 (329)
-..-+
T Consensus 189 DNvl~ 193 (247)
T PLN02589 189 DNTLW 193 (247)
T ss_pred cCCCC
Confidence 65543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.1e-09 Score=96.96 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccchhhhhhhhccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.++.+|||+|||+|.+|..+++.+ +.+++++|+|+.+++.+++++... ++++..+++|+....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~------------- 128 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL------------- 128 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-------------
Confidence 457799999999999999999886 369999999999999999998764 355778899987632
Q ss_pred ccccccCCCCC---CE--EEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYF---DR--ILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~f---D~--Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.+ . ..+ +. ++++-+ .|.+ .+++ ..++|+.+.+.|+|||.+++..-+.
T Consensus 129 ---~~-~-~~~~~~~~~~~~~gs~---~~~~----------~~~e-------~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 129 ---AL-P-PEPAAGRRLGFFPGST---IGNF----------TPEE-------AVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred ---hh-h-cccccCCeEEEEeccc---ccCC----------CHHH-------HHHHHHHHHHhcCCCCEEEEeccCC
Confidence 11 1 112 33 322221 1111 1222 4578999999999999999875443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=91.77 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=95.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
..++..+|++.||++|++.|.|+|+.+..++...+ |+++.+|....|.+.+.+.++..|+. +++++-|......
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF-- 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF-- 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc--
Confidence 34556788999999999999999999999998876 89999999999999999999999986 7888888776430
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC-EEEEEc
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG-KLLFVT 275 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG-~lvysT 275 (329)
...+..+|.|++|.|-- | ..+-+|++.||.+| ++
T Consensus 172 --------------~~ks~~aDaVFLDlPaP------------w---------------~AiPha~~~lk~~g~r~---- 206 (314)
T KOG2915|consen 172 --------------LIKSLKADAVFLDLPAP------------W---------------EAIPHAAKILKDEGGRL---- 206 (314)
T ss_pred --------------cccccccceEEEcCCCh------------h---------------hhhhhhHHHhhhcCceE----
Confidence 11357899999999932 2 24677788888766 44
Q ss_pred CCCCccccHHHHHHHH
Q psy15212 276 CSLWFEESEEQAIIFS 291 (329)
Q Consensus 276 CS~~~~Ene~vv~~~l 291 (329)
||+.|- .++|+.-+
T Consensus 207 csFSPC--IEQvqrtc 220 (314)
T KOG2915|consen 207 CSFSPC--IEQVQRTC 220 (314)
T ss_pred EeccHH--HHHHHHHH
Confidence 667663 34555444
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=102.13 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=83.8
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..+...+.+.++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.+++.. ...-.++++.+|+.....
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~------- 97 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDL------- 97 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEeccccccc-------
Confidence 344455666678899999999999999999875 49999999999998765422 111137888899864320
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+ +..++||.|++..++.- .... ...++|+++.+.|||||++++...++.
T Consensus 98 --------~-~~~~~fD~I~~~~~l~~-------------l~~~-------~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 98 --------N-ISDGSVDLIFSNWLLMY-------------LSDK-------EVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred --------C-CCCCCEEEEehhhhHHh-------------CCHH-------HHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 1 24578999997654220 0111 125689999999999999988654333
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=86.07 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=106.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILS-DISKINLKKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~~~~~~~~~ 205 (329)
..|+++|||+||+||+.+-.+-++.+ |.|.++|+-. -.... +.++.+ |.++.. .+..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----------~~p~~Ga~~i~~~dvtdp~---~~~k----- 127 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----------IEPPEGATIIQGNDVTDPE---TYRK----- 127 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----------ccCCCCcccccccccCCHH---HHHH-----
Confidence 46799999999999999998888875 8999999821 11122 445554 776643 1111
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHH
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~ 285 (329)
.|+.+++...|+||.|.---.+|+ +..+...+..+=...|.-|..+++|+|.++ |-+...+.+.
T Consensus 128 --i~e~lp~r~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e~~ 191 (232)
T KOG4589|consen 128 --IFEALPNRPVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSEEA 191 (232)
T ss_pred --HHHhCCCCcccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCchH
Confidence 112245678999999987666766 233445555666677888899999999998 8777666666
Q ss_pred HHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 286 QAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 286 vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
-.+.-+..+ ..++.+. |...+....+-||+|+=.|.
T Consensus 192 ~l~r~l~~~f~~Vk~vK------P~Asr~eS~E~y~v~~~~k~ 228 (232)
T KOG4589|consen 192 LLQRRLQAVFTNVKKVK------PDASRDESAETYLVCLNFKG 228 (232)
T ss_pred HHHHHHHHHhhhcEeeC------CccccccccceeeeeeeccC
Confidence 666655543 3344443 54444467788998876654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=90.47 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=81.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+.+|||+|||+|..+..+++. +..++++|+++.+++.+++++...+. .+++...|+.+.. .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----------------~ 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA----------------E 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh----------------c
Confidence 4789999999999999988875 45899999999999999999998887 4888888877653 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+.||.|++... + ........+|+.+.+.|++||.++.+++.
T Consensus 108 -~~~~~~D~i~~~~~------l----------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 108 -KGAKSFDVVTCMEV------L----------------EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -CCCCCccEEEehhH------H----------------HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 11368999996321 1 11112346889999999999999988763
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-08 Score=88.35 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=75.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.++.+|||+|||+|..+..++.. +.+|+|+|+++.+++.+++++...+. .+.+.++|+....
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------------- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-------------- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--------------
Confidence 456889999999999999999875 45999999999999999999988776 3788888876532
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.||.|++- .++.. ... ..+..++.++.+.+++++.+.++
T Consensus 118 -------~~fD~ii~~------~~l~~-------~~~-------~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 -------GEFDIVVCM------DVLIH-------YPA-------SDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred -------CCcCEEEEh------hHHHh-------CCH-------HHHHHHHHHHHHHhCCCEEEEEC
Confidence 579999851 11100 001 12345677787888876666554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=95.89 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=78.6
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHH--H---HHcCC---ceEEEecCccccchhhhhhhhcc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISEN--L---KRLNL---KATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n--~---~~~g~---~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+||++|+|.|+.+..+++..+ .+|+++|+++.+++.+++. + .+.+. +++++.+|+..+.
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL---------- 220 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL---------- 220 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH----------
Confidence 35999999999998877777544 6999999999999999962 1 22222 3889999998753
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ...++||+|++|.|-.... ....+ ...++++.+.+.|+|||.++.-..
T Consensus 221 ------~-~~~~~YDVIIvDl~DP~~~---------------~~~~L--yT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 ------S-SPSSLYDVIIIDFPDPATE---------------LLSTL--YTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ------H-hcCCCccEEEEcCCCcccc---------------chhhh--hHHHHHHHHHHhcCCCcEEEEecC
Confidence 1 1246899999998632100 00111 125688999999999999887644
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=90.12 Aligned_cols=137 Identities=22% Similarity=0.354 Sum_probs=96.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
...+||+|||.|...+++|...+ ..++|+|++..++..+...+.+.+++ +.++.+|+...- . .
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l-~--------------~ 82 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL-R--------------R 82 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-H--------------H
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-h--------------h
Confidence 34899999999999999999888 79999999999999999999999997 899999998842 1 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~ 290 (329)
.+.++.+|.|.+.=|+- |.+....-.++ ++.++|+...+.|+|||.|.+.|-. .+--+...+.+
T Consensus 83 ~~~~~~v~~i~i~FPDP------------WpK~rH~krRl--~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~ 146 (195)
T PF02390_consen 83 LFPPGSVDRIYINFPDP------------WPKKRHHKRRL--VNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQF 146 (195)
T ss_dssp HSTTTSEEEEEEES-----------------SGGGGGGST--TSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHH
T ss_pred cccCCchheEEEeCCCC------------Ccccchhhhhc--CCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHH
Confidence 23457899999988754 22221111121 3567899999999999999887653 22233333333
Q ss_pred HhhCCCcEEe
Q psy15212 291 SKNHKDSIRL 300 (329)
Q Consensus 291 l~~~~~~~~~ 300 (329)
.+.++.++..
T Consensus 147 ~~~~~~f~~~ 156 (195)
T PF02390_consen 147 EESHPGFENI 156 (195)
T ss_dssp HHHSTTEEEE
T ss_pred HhcCcCeEEc
Confidence 3336777766
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=94.28 Aligned_cols=84 Identities=21% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-CCc--eEEEe-cCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-NLK--ATLIL-SDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-g~~--v~~~~-~D~~~~~~~~~~~~~~~~~~ 206 (329)
++.+|||+|||+|.....++.... .+++|+|+++..++.+++|++.+ ++. ++++. .|...+. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~-~----------- 181 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF-K----------- 181 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh-h-----------
Confidence 467999999999999998887654 69999999999999999999999 785 66653 3433321 0
Q ss_pred ccccc-cCCCCCCEEEEccCCcccc
Q psy15212 207 NRFRF-YKNKYFDRILADLPCTGSG 230 (329)
Q Consensus 207 ~~~~~-~~~~~fD~Vl~D~PCsg~G 230 (329)
.. ...+.||.|+|+||+-.++
T Consensus 182 ---~i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 182 ---GIIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred ---cccccCCceEEEEeCCCCcCcc
Confidence 00 1246899999999987554
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=92.71 Aligned_cols=94 Identities=19% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.++.+|||+|||+|..+..+++..+ ..++|+|+|+.+++.++++. -.+.+..+|+..++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp------------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLP------------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCC-------------
Confidence 4567899999999999999987654 37999999999999987653 23678888888765
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||.|++-- .| ..+++..+.|||||+++.++
T Consensus 147 -----~~~~sfD~I~~~~----------~~-------------------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 147 -----FADQSLDAIIRIY----------AP-------------------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred -----CcCCceeEEEEec----------CC-------------------CCHHHHHhhccCCCEEEEEe
Confidence 3467899998410 01 12456677899999999865
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-08 Score=91.88 Aligned_cols=120 Identities=20% Similarity=0.323 Sum_probs=96.9
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..+||+|||.|...+++|+..+ ..++|+|+....+..+.+.+.+.++ ++.++..|+..+- .+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l----------------~~ 113 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL----------------DY 113 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH----------------Hh
Confidence 5899999999999999999888 7899999999999999999999999 7999999998864 33
Q ss_pred cC-CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 212 YK-NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 212 ~~-~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
+. +++.|.|.+.=|+- |.+....-.++ +|..+|+...+.|+|||.|.+.|- +++..++
T Consensus 114 ~~~~~sl~~I~i~FPDP------------WpKkRH~KRRl--~~~~fl~~~a~~Lk~gG~l~~aTD------~~~y~e~ 172 (227)
T COG0220 114 LIPDGSLDKIYINFPDP------------WPKKRHHKRRL--TQPEFLKLYARKLKPGGVLHFATD------NEEYFEW 172 (227)
T ss_pred cCCCCCeeEEEEECCCC------------CCCcccccccc--CCHHHHHHHHHHccCCCEEEEEec------CHHHHHH
Confidence 33 44999999988854 43333222333 477899999999999999998764 4555555
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=89.74 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH------------H-cCCceEEEecCccccchhhh
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK------------R-LNLKATLILSDISKINLKKL 197 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~------------~-~g~~v~~~~~D~~~~~~~~~ 197 (329)
.++.+|||+|||.|.-+..+|++ |-.|+|+|+|+..++.+..... + .+..++++++|+..+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---- 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT---- 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC----
Confidence 46779999999999999999975 5699999999999997633211 0 1224788899988765
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...+.||.|+- - +.+..- . .....+.++...++|||||++++.|-+
T Consensus 108 ------------~-~~~~~fD~i~D-~-----~~~~~l-------~-------~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 108 ------------A-ADLGPVDAVYD-R-----AALIAL-------P-------EEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ------------c-ccCCCcCEEEe-c-----hhhccC-------C-------HHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 1 01256898862 1 111100 0 112345788899999999987777655
Q ss_pred C
Q psy15212 278 L 278 (329)
Q Consensus 278 ~ 278 (329)
.
T Consensus 155 ~ 155 (213)
T TIGR03840 155 Y 155 (213)
T ss_pred c
Confidence 4
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.9e-09 Score=91.18 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=92.7
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~ 194 (329)
.+.++.-|.++. .+.+-.+|.|+|||||..|..++++.+ +.|+|+|.|+.|++.+++.+ .++++..+|++...
T Consensus 15 RtRPa~dLla~V-p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~- 88 (257)
T COG4106 15 RTRPARDLLARV-PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK- 88 (257)
T ss_pred ccCcHHHHHhhC-CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC-
Confidence 345555555543 245567999999999999999999988 89999999999999886554 34788889988765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+...+|+++.++- ..|. + -.-++|.+.+..|.|||.|..-
T Consensus 89 ------------------p~~~~dllfaNAv------------lqWl--p--------dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 89 ------------------PEQPTDLLFANAV------------LQWL--P--------DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred ------------------CCCccchhhhhhh------------hhhc--c--------ccHHHHHHHHHhhCCCceEEEE
Confidence 4578999987653 1232 1 1245788888889999999865
Q ss_pred cCCCCccccHHHHHHHHh
Q psy15212 275 TCSLWFEESEEQAIIFSK 292 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~ 292 (329)
----+.+..-..+....+
T Consensus 129 mPdN~depsH~~mr~~A~ 146 (257)
T COG4106 129 MPDNLDEPSHRLMRETAD 146 (257)
T ss_pred CCCccCchhHHHHHHHHh
Confidence 433333333334444443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=95.01 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC------CceEEEecCccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN------LKATLILSDISK 191 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g------~~v~~~~~D~~~ 191 (329)
+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.+..+ ..+.+...|+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5789999999999999999975 4699999999999999999988752 225677777543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=89.36 Aligned_cols=109 Identities=16% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C---ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L---KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~---~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
...+||++|+|.|+.+..+++.-+ .+|+.+|+++..++.+++.+...+ + +++++.+|+..+-
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l------------ 158 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL------------ 158 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH------------
Confidence 457999999999999999987644 699999999999999999886542 2 3899999987653
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+++||+|++|.+-.. | | ...+ ...++++.+.+.|+|||.++.-
T Consensus 159 ----~~~~~~~yDvIi~D~~dp~-~-----~----------~~~L--~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 159 ----KNAPEGTYDAIIVDSSDPV-G-----P----------AQEL--FEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred ----hhccCCCCCEEEEcCCCCC-C-----c----------hhhh--hHHHHHHHHHHhcCCCcEEEEC
Confidence 1112468999999976321 1 1 0011 2356889999999999998753
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=92.42 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=104.8
Q ss_pred CCCcccccceEEEechhH---HHHhh---hcCCCCCCeEEeecCCCchHHHHHHHhCC--C-------------------
Q psy15212 104 SKIPKFFNGFCSIQDAAA---QLAAP---LLDIRSGMYVLDACSAPGGKTCHLLEIAD--I------------------- 156 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s---~l~~~---~l~~~~g~~VLDlcag~G~kt~~la~~~~--~------------------- 156 (329)
+..++++.||=.-+.++. .|++. +.+.+++..++|.-||+|.+.+.+|.+.. +
T Consensus 157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l 236 (381)
T COG0116 157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL 236 (381)
T ss_pred CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence 334677788777766662 33333 33567788999999999999999887652 1
Q ss_pred -------------------EEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCC
Q psy15212 157 -------------------KLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNK 215 (329)
Q Consensus 157 -------------------~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (329)
.++|+|+++.+++.++.|+++.|+. |++..+|++.+. ..+ +
T Consensus 237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~----------------~~~--~ 298 (381)
T COG0116 237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK----------------EPL--E 298 (381)
T ss_pred HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC----------------CCC--C
Confidence 3789999999999999999999997 899999999876 111 6
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+|+||+|||+. . .-.+-.....++.++.+.+.+.++--++.|++|-
T Consensus 299 ~~gvvI~NPPYG-e-------------Rlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 299 EYGVVISNPPYG-E-------------RLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred cCCEEEeCCCcc-h-------------hcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 899999999976 1 1111133444677888888888887778887653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-08 Score=85.31 Aligned_cols=129 Identities=13% Similarity=0.135 Sum_probs=86.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
...++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.++++.. .+.+..+|+.. +
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~-------------- 100 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-P-------------- 100 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-C--------------
Confidence 345678999999999999999998754 799999999999999988653 25677788766 3
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--------CC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--------LW 279 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--------~~ 279 (329)
+.+++||+|++. +++.+- ++ ....++++++.+.+ ++.++.+..- ..
T Consensus 101 ----~~~~sfD~V~~~------~vL~hl-------~p-------~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~ 154 (204)
T TIGR03587 101 ----FKDNFFDLVLTK------GVLIHI-------NP-------DNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYR 154 (204)
T ss_pred ----CCCCCEEEEEEC------ChhhhC-------CH-------HHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeee
Confidence 245789999952 232211 11 12345677777765 4566654321 11
Q ss_pred cccc----HHHHHHHHhhCCCcEEecC
Q psy15212 280 FEES----EEQAIIFSKNHKDSIRLNS 302 (329)
Q Consensus 280 ~~En----e~vv~~~l~~~~~~~~~~~ 302 (329)
..+. -+..+++++..|+.+++.-
T Consensus 155 ~~~~~~~~~d~~~~~~~~~~~l~~~~~ 181 (204)
T TIGR03587 155 GNSGRLWKRDFAGEMMDRYPDLKLVDY 181 (204)
T ss_pred CCcchhhhhhHHHHHHHhCCcceeeec
Confidence 1110 1235778888888888763
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=91.92 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCCCeEEeecCCCch----HHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHH----cC-----------------
Q psy15212 131 RSGMYVLDACSAPGG----KTCHLLEIAD------IKLISVDNNLSRLNMISENLKR----LN----------------- 179 (329)
Q Consensus 131 ~~g~~VLDlcag~G~----kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~----~g----------------- 179 (329)
.++.+|||+|||+|. .+..+++..+ .+|+|+|+|+.+++.+++.+-. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 4555555432 5899999999999999885310 00
Q ss_pred -----C--ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH-H
Q psy15212 180 -----L--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL-S 251 (329)
Q Consensus 180 -----~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l-~ 251 (329)
+ .+++..+|+.... ...+.||+|+| . .+ +..+ .
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~------------------~~~~~fD~I~c----r--nv---------------l~yf~~ 218 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES------------------PPLGDFDLIFC----R--NV---------------LIYFDE 218 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC------------------CccCCCCEEEe----c--hh---------------HHhCCH
Confidence 1 2566777776643 23578999995 2 11 1111 1
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 252 KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 252 ~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.++++...+.|+|||+|+....
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 3467899999999999999998744
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=93.42 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=74.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKKLY 198 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~~~ 198 (329)
...++..+++.+++.|||+|||+|..|..+++.. .+|+|+|+|+.+++.+++++...+. . ++++.+|+....
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~----- 98 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE----- 98 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-----
Confidence 4445556678899999999999999999999864 5899999999999999999988774 3 899999998754
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccc
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
...||.|+.|+|+..+
T Consensus 99 ---------------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 ---------------FPYFDVCVANVPYQIS 114 (294)
T ss_pred ---------------ccccCEEEecCCcccC
Confidence 1368999999999744
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=83.90 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=73.3
Q ss_pred HHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 122 QLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 122 ~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
.++..+.. ..++.+|||+|||.|..+..+++. +.+++++|+++.+++. ..+.....+.....
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~------- 73 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK---------RNVVFDNFDAQDPP------- 73 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH---------TTSEEEEEECHTHH-------
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh---------hhhhhhhhhhhhhh-------
Confidence 34444443 467889999999999999999765 4499999999999987 21222222222221
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..++.||.|++. .++.+.++ ...+|+...++|||||+++.++-.
T Consensus 74 -----------~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 74 -----------FPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -----------CHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -----------ccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 235799999953 33333221 346899999999999999998743
|
... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-07 Score=82.48 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=115.9
Q ss_pred cCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCC-C------CC---HHHHHHHHHHCCCe-eEEeCCceEEE
Q psy15212 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQR-K------TT---LISYNKLLKKSGLE-TTIIGPLAIKL 97 (329)
Q Consensus 29 ~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~-k------~~---~~~~~~~l~~~g~~-~~~~~~~~~~~ 97 (329)
-.+|.++.+.+...+|....+.+.++++-.-.+-.+-.+.. . .+ .+.+.+.|...... .-|+.-+++.+
T Consensus 15 ~~l~~~~~~~~~~~~g~~~~w~~~l~~lp~~~~~~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~l~PWRKGPf~l~gi~I 94 (315)
T PF08003_consen 15 ETLPAQLAAWLERRHGDLPRWQEALEQLPDLEPSSVDLSDSVTIGSASDLSAEQRQQLEQLLKALMPWRKGPFSLFGIHI 94 (315)
T ss_pred HHhHHHHHHHHHhccCCHHHHHHHHHHcCCCCCcEEecCCcEEeCCCCCCCHHHHHHHHHHHHhhCCcccCCcccCCEee
Confidence 34677777777667888788888888887755533322221 0 11 22333334432211 01112234444
Q ss_pred cCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 98 HTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 98 ~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
++ +|.. |--=..+...+..-.|.+|||+|||.|..+..|+......|+|+|.+..-+...+---+-
T Consensus 95 Dt--------EWrS------d~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~ 160 (315)
T PF08003_consen 95 DT--------EWRS------DWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHF 160 (315)
T ss_pred cc--------cccc------cchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHH
Confidence 32 1111 111122233333446899999999999999999987657999999998876664444444
Q ss_pred cCCceEEEec--CccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH
Q psy15212 178 LNLKATLILS--DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255 (329)
Q Consensus 178 ~g~~v~~~~~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 255 (329)
.|.+..+... -...++ ..+.||.|+ ++|++-|..+ ..
T Consensus 161 lg~~~~~~~lplgvE~Lp-------------------~~~~FDtVF------~MGVLYHrr~----------------Pl 199 (315)
T PF08003_consen 161 LGQDPPVFELPLGVEDLP-------------------NLGAFDTVF------SMGVLYHRRS----------------PL 199 (315)
T ss_pred hCCCccEEEcCcchhhcc-------------------ccCCcCEEE------EeeehhccCC----------------HH
Confidence 4444222222 222222 136899999 5888744222 23
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
..|......|++||.||.-|--+..++
T Consensus 200 ~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 200 DHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred HHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 457777888999999999876555443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=92.74 Aligned_cols=86 Identities=23% Similarity=0.235 Sum_probs=69.5
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..+...+++.+|++|||+|||+|..|..+++..+ +|+|+|+++.+++.+++++.. -.++++++|+..++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~------- 101 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDL------- 101 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCH-------
Confidence 3445566788899999999999999999998865 999999999999999988753 248899999987651
Q ss_pred cccccccccccCCCCCCEEEEccCCcc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg 228 (329)
.+..+|.|+.++|+.-
T Consensus 102 -----------~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 -----------SELQPLKVVANLPYNI 117 (272)
T ss_pred -----------HHcCcceEEEeCCccc
Confidence 1111699999999863
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.7e-08 Score=97.82 Aligned_cols=114 Identities=27% Similarity=0.320 Sum_probs=83.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHH--HHHc---CC---ceEEEecCccccchhhhhhhh
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISEN--LKRL---NL---KATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n--~~~~---g~---~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.+..+|||+|+|.|..+..+++..+ .+|+++|+|++.++.++++ +... .. +++++.+|+.+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l-------- 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL-------- 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH--------
Confidence 4457999999999999999987644 6999999999999999994 3222 12 2789999998753
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.. ..++||+|++|+|... .|.. .++ ...++++.+.+.|+|||.++..+++-
T Consensus 368 --------~~-~~~~fDvIi~D~~~~~------~~~~---------~~L--~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 368 --------RK-LAEKFDVIIVDLPDPS------NPAL---------GKL--YSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred --------Hh-CCCCCCEEEEeCCCCC------Ccch---------hcc--chHHHHHHHHHhcCCCeEEEEecCCc
Confidence 11 2468999999987431 0110 000 12567888899999999999877653
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.7e-09 Score=85.30 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=67.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
-+|.+++|+|||.|..+++.+......|+|+|+++..++...+|++...+.+.++++|..+..
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle----------------- 109 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE----------------- 109 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-----------------
Confidence 468899999999999997666433379999999999999999999999998999999988865
Q ss_pred ccCCCCCCEEEEccCC
Q psy15212 211 FYKNKYFDRILADLPC 226 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PC 226 (329)
+..+.||.++.|||.
T Consensus 110 -~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 -LKGGIFDTAVINPPF 124 (185)
T ss_pred -ccCCeEeeEEecCCC
Confidence 245899999999994
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=87.98 Aligned_cols=91 Identities=13% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.+++.. ..+++|+..++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp------------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALP------------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCC------------------
Confidence 47799999999999999999875569999999999999887641 34678887765
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
+.+++||.|++- .+ ++.-++ ..+.|++..+.|||.+
T Consensus 106 ~~d~sfD~v~~~-----~~-l~~~~d----------------~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSS-----FA-LHASDN----------------IEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEec-----Ch-hhccCC----------------HHHHHHHHHHHhcCce
Confidence 356899999952 11 221111 2457889999999843
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-08 Score=96.90 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=84.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...++...+..++|+|||+|.+++.+|+... +|+++++++..+.-++.|++.+|++ .+++++.+.++- +.+.
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~-~sl~----- 448 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF-PSLL----- 448 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhhcc-chhc-----
Confidence 4455677889999999999999999998655 9999999999999999999999998 899999776643 1110
Q ss_pred cccccccccCCCCCC-EEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 204 KTNNRFRFYKNKYFD-RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD-~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
.. .-..-+ ++++|||-.|.-. .+++ +.+..+.--+++|.+|..+-.
T Consensus 449 ------~~-~~~~~~~v~iiDPpR~Glh~------------------------~~ik-~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 449 ------TP-CCDSETLVAIIDPPRKGLHM------------------------KVIK-ALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred ------cc-CCCCCceEEEECCCcccccH------------------------HHHH-HHHhccCccceEEEEcCHHHh
Confidence 00 001334 8899999665311 1222 222233334899999987753
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-08 Score=89.60 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=70.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
....+..+++.+++.|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++... -.++++++|+..++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~-~~v~ii~~D~~~~~------- 88 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAA-GNVEIIEGDALKVD------- 88 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccC-CCEEEEEeccccCC-------
Confidence 444555667888999999999999999999987 459999999999999999988652 13889999998764
Q ss_pred hcccccccccccCCCCCCEEEEccCCcc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg 228 (329)
+ ..||.|+.++|+.-
T Consensus 89 -----------~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 -----------L--PEFNKVVSNLPYQI 103 (258)
T ss_pred -----------c--hhceEEEEcCCccc
Confidence 1 35899999999863
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=84.83 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=78.3
Q ss_pred chhHHHHhhh--cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH------------H-cCCce
Q psy15212 118 DAAAQLAAPL--LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK------------R-LNLKA 182 (329)
Q Consensus 118 d~~s~l~~~~--l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~------------~-~g~~v 182 (329)
.+...+...+ +.+.++.+|||+|||.|.-+..+|++ |..|+|+|+|+..++.+.+... + .+.++
T Consensus 21 ~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 21 EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 4444555443 23456789999999999999999974 5699999999999998642110 0 01236
Q ss_pred EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH-HHHHHHHHHHH
Q psy15212 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL-SKYSCKILNNL 261 (329)
Q Consensus 183 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l-~~~q~~lL~~a 261 (329)
++.++|+..+. .. ....||.|+- .++ +..+ .....+.++..
T Consensus 100 ~~~~~D~~~l~----------------~~-~~~~fd~v~D------~~~---------------~~~l~~~~R~~~~~~l 141 (218)
T PRK13255 100 TIYCGDFFALT----------------AA-DLADVDAVYD------RAA---------------LIALPEEMRERYVQQL 141 (218)
T ss_pred EEEECcccCCC----------------cc-cCCCeeEEEe------hHh---------------HhhCCHHHHHHHHHHH
Confidence 78888888764 11 1247888872 111 1111 12345678899
Q ss_pred HhcCCCCCEEEEEc
Q psy15212 262 WKMLKPGGKLLFVT 275 (329)
Q Consensus 262 ~~~LkpgG~lvysT 275 (329)
.++|+|||++++.|
T Consensus 142 ~~lL~pgG~~~l~~ 155 (218)
T PRK13255 142 AALLPAGCRGLLVT 155 (218)
T ss_pred HHHcCCCCeEEEEE
Confidence 99999999755544
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=81.74 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=99.9
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDI 189 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~ 189 (329)
+.+-+.-.++...++..-...++||+|.-+|.-++.+|...+ |+|+++|+++...+...+..+..|+. ++++++++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 444566667777777666678999999999999999998887 89999999999999999999999996 89999988
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.+.- .++. .....+.||.+++|+- . .+ .....+++.+++|+||
T Consensus 135 ~esL-d~l~-----------~~~~~~tfDfaFvDad---------------K------~n----Y~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 135 LESL-DELL-----------ADGESGTFDFAFVDAD---------------K------DN----YSNYYERLLRLLRVGG 177 (237)
T ss_pred hhhH-HHHH-----------hcCCCCceeEEEEccc---------------h------HH----HHHHHHHHHhhccccc
Confidence 7632 1111 1124578999999973 1 11 2267889999999999
Q ss_pred EEEEEcCCC
Q psy15212 270 KLLFVTCSL 278 (329)
Q Consensus 270 ~lvysTCS~ 278 (329)
.|++-.-++
T Consensus 178 vi~~DNvl~ 186 (237)
T KOG1663|consen 178 VIVVDNVLW 186 (237)
T ss_pred EEEEecccc
Confidence 999976443
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=82.85 Aligned_cols=144 Identities=23% Similarity=0.329 Sum_probs=100.0
Q ss_pred ceEEEechhHHHHhhhcCCCC--CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCc
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRS--GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDI 189 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~--g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~ 189 (329)
-.+++|-+-+.-+.++|+... ..-|||+|||+|--+..+.+-. -..+++|+|+.|++.+.+. .+ ...++.+|+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~--e~--egdlil~DM 102 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVER--EL--EGDLILCDM 102 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHh--hh--hcCeeeeec
Confidence 346789998888888887655 5689999999998887776533 4889999999999998872 22 245777887
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHH-HHHHHHHHHHHHHHHhcCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI-KKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~-~~l~~~q~~lL~~a~~~Lkpg 268 (329)
..-- + +.++.||.+|. .+ .+.|.-+...- ..-.+....+....+..|++|
T Consensus 103 G~Gl----------------p-frpGtFDg~IS------IS------AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 103 GEGL----------------P-FRPGTFDGVIS------IS------AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred CCCC----------------C-CCCCccceEEE------ee------eeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 6532 2 36789999883 11 12343221111 111122344667778899999
Q ss_pred CEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 269 GKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 269 G~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
++-|+- ...||+++++.++..
T Consensus 154 ~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 154 ARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred ceeEEE----ecccchHHHHHHHHH
Confidence 999874 567999999988764
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=85.85 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=56.8
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
..+...++.+|||+|||+|..+..+++.. + .+|+|+|+++.+++.++++....++. +...|+..+.
T Consensus 54 ~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~l~------- 124 (232)
T PRK06202 54 PALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVT--FRQAVSDELV------- 124 (232)
T ss_pred HhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCe--EEEEeccccc-------
Confidence 33444567899999999999999888643 2 49999999999999999887655544 3334443333
Q ss_pred hcccccccccccCCCCCCEEEEc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILAD 223 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D 223 (329)
..+++||.|++.
T Consensus 125 -----------~~~~~fD~V~~~ 136 (232)
T PRK06202 125 -----------AEGERFDVVTSN 136 (232)
T ss_pred -----------ccCCCccEEEEC
Confidence 134689999963
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=94.41 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=95.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---------CEEEEEeCChhHHHHHHHHHHHcC-CceEEEecCccccchhhhhhhhc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---------IKLISVDNNLSRLNMISENLKRLN-LKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---------~~v~avD~~~~rl~~l~~n~~~~g-~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+.+|||.|||+|++.++++.... ..++|+|+++..+..++.|+...+ ..+.+.+.|.......
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~------- 104 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL------- 104 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-------
Confidence 45899999999999999987552 378999999999999999998876 2355555554432100
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCC-----CC--cccCCh----hHHH-------------HHHHHHHHH-
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP-----DI--PWLRRK----NDIK-------------KLSKYSCKI- 257 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p-----~~--~~~~~~----~~~~-------------~l~~~q~~l- 257 (329)
.. . ...+.||+|+.+||+.......+.- +. .+.-.. +... ........+
T Consensus 105 -~~----~-~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f 178 (524)
T TIGR02987 105 -NI----E-SYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVF 178 (524)
T ss_pred -cc----c-cccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHH
Confidence 00 0 0125799999999998654322110 00 000000 0000 001122333
Q ss_pred HHHHHhcCCCCCEEEEEcCC-CCccccHHHHHHHHhhCCCcE-EecC--CCcccCCC
Q psy15212 258 LNNLWKMLKPGGKLLFVTCS-LWFEESEEQAIIFSKNHKDSI-RLNS--PGQLLPTV 310 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS-~~~~Ene~vv~~~l~~~~~~~-~~~~--~~~~~p~~ 310 (329)
++.+.++|++||++.+.+-+ +........+...+-.+.... +... ...++++.
T Consensus 179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v 235 (524)
T TIGR02987 179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGV 235 (524)
T ss_pred HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCC
Confidence 46789999999999987633 334444444555443332332 2222 23566654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-08 Score=85.91 Aligned_cols=150 Identities=17% Similarity=0.099 Sum_probs=98.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+=.++||+|||+|-.+..+-.+.. +++++|+|..|++.+.++ |+--++.++|+..+. ..
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl----------------~~ 183 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFL----------------ED 183 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhc----cchHHHHHHHHHHHh----------------hh
Confidence 347999999999988888776554 999999999999987664 221234445554432 11
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc----------
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE---------- 281 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~---------- 281 (329)
..+++||.|. ..++..+..--..++.-+..+|+|||.+.||.-+...+
T Consensus 184 ~~~er~DLi~----------------------AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R 241 (287)
T COG4976 184 LTQERFDLIV----------------------AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR 241 (287)
T ss_pred ccCCcccchh----------------------hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh
Confidence 2467899996 24454444445678889999999999999998665433
Q ss_pred --ccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEE
Q psy15212 282 --ESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 282 --Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~ 325 (329)
..+..|...++.+ +++.+.....++-......-..+.|+|+.+
T Consensus 242 yAH~~~YVr~~l~~~-Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 242 YAHSESYVRALLAAS-GLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hccchHHHHHHHHhc-CceEEEeecccchhhcCCCCCCceEEEecC
Confidence 3567778888776 666655432111110001344577888754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-07 Score=94.98 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=79.2
Q ss_pred CCcccccceEEEechhH---HHHhhhc---CC-CCCCeEEeecCCCchHHHHHHHhC-----------------------
Q psy15212 105 KIPKFFNGFCSIQDAAA---QLAAPLL---DI-RSGMYVLDACSAPGGKTCHLLEIA----------------------- 154 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s---~l~~~~l---~~-~~g~~VLDlcag~G~kt~~la~~~----------------------- 154 (329)
..+.++.|+=..+.++. .+++.+| +. ++++.++|.+||+|.+.+.+|.+.
T Consensus 156 g~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~ 235 (702)
T PRK11783 156 GESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEA 235 (702)
T ss_pred CCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHH
Confidence 34566667654444442 3444333 23 568899999999999998887531
Q ss_pred --------------------CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 155 --------------------DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 155 --------------------~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
..+|+|+|+++.+++.+++|+..+|+. +++..+|+.++. ...
T Consensus 236 ~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~----------------~~~ 299 (702)
T PRK11783 236 LWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLK----------------NPL 299 (702)
T ss_pred HHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcc----------------ccc
Confidence 126999999999999999999999996 789999998764 111
Q ss_pred CCCCCCEEEEccCCc
Q psy15212 213 KNKYFDRILADLPCT 227 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCs 227 (329)
..+.||.|++|||+.
T Consensus 300 ~~~~~d~IvtNPPYg 314 (702)
T PRK11783 300 PKGPTGLVISNPPYG 314 (702)
T ss_pred ccCCCCEEEECCCCc
Confidence 235799999999976
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=81.81 Aligned_cols=161 Identities=24% Similarity=0.282 Sum_probs=100.1
Q ss_pred hHHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccc
Q psy15212 120 AAQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISK 191 (329)
Q Consensus 120 ~s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~ 191 (329)
.|.|++.++ .+++|.+||-+||++|..-.|+++..+ |.|+|+|.++...+.+-...++. -++-.+.+|++.
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~DAr~ 133 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPILEDARH 133 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEES-TTS
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-CceeeeeccCCC
Confidence 377777765 367899999999999999999999877 89999999999998888666653 346678899998
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH-HHHHHhcCCCCCE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI-LNNLWKMLKPGGK 270 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l-L~~a~~~LkpgG~ 270 (329)
+. ++..+ -+.+|+|++|..= | -|.++ +.+|-.+||+||.
T Consensus 134 P~--------------~Y~~l-v~~VDvI~~DVaQ---------p----------------~Qa~I~~~Na~~fLk~gG~ 173 (229)
T PF01269_consen 134 PE--------------KYRML-VEMVDVIFQDVAQ---------P----------------DQARIAALNARHFLKPGGH 173 (229)
T ss_dssp GG--------------GGTTT-S--EEEEEEE-SS---------T----------------THHHHHHHHHHHHEEEEEE
T ss_pred hH--------------Hhhcc-cccccEEEecCCC---------h----------------HHHHHHHHHHHhhccCCcE
Confidence 65 01111 2589999999861 1 15554 4567789999999
Q ss_pred EEEEc--CCC-CccccHHHHHHHHhhC--CCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 271 LLFVT--CSL-WFEESEEQAIIFSKNH--KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 271 lvysT--CS~-~~~Ene~vv~~~l~~~--~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
++.+- -|+ ...+.+++.+.-.++- .+++.+.. ..+-|- +..--.++++.+|
T Consensus 174 ~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~-i~LePy----~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 174 LIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ-ITLEPY----ERDHAMVVGRYRK 229 (229)
T ss_dssp EEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE-EE-TTT----STTEEEEEEEE--
T ss_pred EEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE-eccCCC----CCCcEEEEEEecC
Confidence 98774 222 2334555555544432 24554431 122343 3334455665543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=90.92 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=99.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..+..+||+|||.|..++++|...+ ..++|+|++...+..+...+.+.|+. +.++..|+..+.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~--------------- 410 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL--------------- 410 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH---------------
Confidence 3467899999999999999999887 79999999999999999999999987 778888876543
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
..+.++++|.|.+.=|+- |.+....-.++ +|..+|+...+.|||||.+.+.|-. .+--+..+.
T Consensus 411 -~~~~~~sv~~i~i~FPDP------------WpKkrh~krRl--~~~~fl~~~~~~Lk~gG~i~~~TD~--~~y~~~~~~ 473 (506)
T PRK01544 411 -NDLPNNSLDGIYILFPDP------------WIKNKQKKKRI--FNKERLKILQDKLKDNGNLVFASDI--ENYFYEAIE 473 (506)
T ss_pred -HhcCcccccEEEEECCCC------------CCCCCCccccc--cCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHH
Confidence 234567899999988854 32222222222 3667899999999999999987653 222222222
Q ss_pred HHHhhCCCcEEe
Q psy15212 289 IFSKNHKDSIRL 300 (329)
Q Consensus 289 ~~l~~~~~~~~~ 300 (329)
.+..++.++..
T Consensus 474 -~~~~~~~f~~~ 484 (506)
T PRK01544 474 -LIQQNGNFEII 484 (506)
T ss_pred -HHHhCCCeEec
Confidence 33456667654
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-07 Score=83.16 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=73.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+|.+++|..++|+-+|-||-|..+++..+ ++|+|+|.++..++.++++++.++-.++++++++.++. ..+
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~-~~l------ 85 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF-EHL------ 85 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH-HHH------
Confidence 4456788999999999999999999999875 89999999999999999999877555889999988764 000
Q ss_pred cccccccccCCCCCCEEEEccCCccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.......+|.|++|-=+|+.
T Consensus 86 ------~~~~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 86 ------DELLVTKIDGILVDLGVSSP 105 (305)
T ss_pred ------HhcCCCcccEEEEeccCCHh
Confidence 00122469999999877765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-07 Score=76.53 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=96.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
...++++|||+|-.++.+++..+ ...++.|+|+..++...+.++.+++.+.++..|...--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l----------------- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL----------------- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-----------------
Confidence 46899999999999999998876 68899999999999999999999999889999876532
Q ss_pred ccCCCCCCEEEEccCCcccc--ccc-cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSG--VVR-RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G--~~~-~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
..++.|+++.+||+--+- -+. +.-+..|.-. ..-...-.++|...-.+|.|.|.++..+|.-+ +.+-|
T Consensus 107 --~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG----~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---~p~ei 177 (209)
T KOG3191|consen 107 --RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGG----KDGREVTDRLLPQVPDILSPRGVFYLVALRAN---KPKEI 177 (209)
T ss_pred --ccCCccEEEECCCcCcCCcccchhHHHHHHHhcC----cchHHHHHHHHhhhhhhcCcCceEEeeehhhc---CHHHH
Confidence 348999999999985321 100 0001112100 11123345678888889999998888777522 22334
Q ss_pred HHHHhhC
Q psy15212 288 IIFSKNH 294 (329)
Q Consensus 288 ~~~l~~~ 294 (329)
-++++..
T Consensus 178 ~k~l~~~ 184 (209)
T KOG3191|consen 178 LKILEKK 184 (209)
T ss_pred HHHHhhc
Confidence 4466654
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-07 Score=81.08 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=50.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDI 189 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~ 189 (329)
.++.+|||+|||+|..+..+++.. ..|+++|+++.+++.++++....+. .+.+..+|.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc
Confidence 567899999999999999998754 5899999999999999999998887 378888883
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=84.66 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=73.9
Q ss_pred HHHHhhhcCCCCCC--eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc------CC---c-eEEEecC
Q psy15212 121 AQLAAPLLDIRSGM--YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL------NL---K-ATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g~--~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~------g~---~-v~~~~~D 188 (329)
.+..+.++++++|. +|||++||.|.-++.++.+ |++|+++|.++.....+++++++. +. . ++++++|
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 46678888889988 8999999999999999986 558999999999999999999995 32 3 7788888
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+..+- .. ....||+|.+|||+.
T Consensus 154 a~~~L----------------~~-~~~~fDVVYlDPMfp 175 (250)
T PRK10742 154 SLTAL----------------TD-ITPRPQVVYLDPMFP 175 (250)
T ss_pred HHHHH----------------hh-CCCCCcEEEECCCCC
Confidence 87653 11 124799999999987
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=79.19 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=56.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.||.+|||+|||.|....++.+..+...+|+|+++..+..+.+ .|+ .++++|+..--
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rGv--~Viq~Dld~gL---------------- 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RGV--SVIQGDLDEGL---------------- 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cCC--CEEECCHHHhH----------------
Confidence 56799999999999999999888666899999999998765443 354 57888876532
Q ss_pred cccCCCCCCEEEE
Q psy15212 210 RFYKNKYFDRILA 222 (329)
Q Consensus 210 ~~~~~~~fD~Vl~ 222 (329)
..++++.||.|++
T Consensus 69 ~~f~d~sFD~VIl 81 (193)
T PF07021_consen 69 ADFPDQSFDYVIL 81 (193)
T ss_pred hhCCCCCccEEeh
Confidence 2357899999995
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=83.60 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=88.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC-----CceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN-----LKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g-----~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..+||-+|.|.|+.+..+++..+ .+|+++|+++..++.+++.+...+ -+++++.+|+..+-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L------------- 170 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL------------- 170 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-------------
Confidence 35899999999999988887554 689999999999999999886432 23889999998763
Q ss_pred ccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHH-HHHhcCCCCCEEEEEcCCCC----c
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILN-NLWKMLKPGGKLLFVTCSLW----F 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpgG~lvysTCS~~----~ 280 (329)
. ...++||+|++|.+-... |. |. . -...++++ .+.+.|+|||.++.-.-|.. +
T Consensus 171 ---~-~~~~~yDvIi~D~~dp~~~~~----~~-----------~--Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~ 229 (336)
T PLN02823 171 ---E-KRDEKFDVIIGDLADPVEGGP----CY-----------Q--LYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHK 229 (336)
T ss_pred ---h-hCCCCccEEEecCCCccccCc----ch-----------h--hccHHHHHHHHHHhcCCCcEEEEeccCcchhccH
Confidence 1 124689999999752110 10 00 0 01245676 67889999998875433322 2
Q ss_pred cccHHHHHHHHhhCCCcE
Q psy15212 281 EESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~ 298 (329)
+....+++.+-+-.+...
T Consensus 230 ~~~~~i~~tl~~vF~~v~ 247 (336)
T PLN02823 230 EVFSSIYNTLRQVFKYVV 247 (336)
T ss_pred HHHHHHHHHHHHhCCCEE
Confidence 223344444444444443
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=9e-07 Score=78.69 Aligned_cols=132 Identities=22% Similarity=0.216 Sum_probs=101.3
Q ss_pred HHHHhhhcC------CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 121 AQLAAPLLD------IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 121 s~l~~~~l~------~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|.|++.++. ++||.+||=+||++|..-.|+++..+ +.|+|+|.|...=..|..+.++. -++..+..|++.+
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-tNiiPIiEDArhP 217 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-TNIIPIIEDARHP 217 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-CCceeeeccCCCc
Confidence 778877763 78999999999999999999999887 89999999988777776665543 3366677899876
Q ss_pred chhhhhhhhcccccccccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH-HHHhcCCCCCE
Q psy15212 193 NLKKLYIDINKKTNNRFRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN-NLWKMLKPGGK 270 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpgG~ 270 (329)
. .+ +.-...|.|+.|.+-+ .|.+++. +|..+||+||.
T Consensus 218 ~----------------KYRmlVgmVDvIFaDvaqp-------------------------dq~RivaLNA~~FLk~gGh 256 (317)
T KOG1596|consen 218 A----------------KYRMLVGMVDVIFADVAQP-------------------------DQARIVALNAQYFLKNGGH 256 (317)
T ss_pred h----------------heeeeeeeEEEEeccCCCc-------------------------hhhhhhhhhhhhhhccCCe
Confidence 5 11 1224789999998732 2555554 68889999999
Q ss_pred EEEE---cCCCCccccHHHHHHHHhhC
Q psy15212 271 LLFV---TCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 271 lvys---TCS~~~~Ene~vv~~~l~~~ 294 (329)
+|.| .|+-....+|.|.+.-.++.
T Consensus 257 fvisikancidstv~ae~vFa~Ev~kl 283 (317)
T KOG1596|consen 257 FVISIKANCIDSTVFAEAVFAAEVKKL 283 (317)
T ss_pred EEEEEecccccccccHHHHHHHHHHHH
Confidence 9987 58888888888877665543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=81.41 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=82.5
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+.+-|+|||+|..+..+|+... +|+|++.++.+.+.+++|++-.|.. ++++++|++... +
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~-rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~------------------f 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE-RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD------------------F 94 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc-eEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc------------------c
Confidence 7999999999999998887654 9999999999999999999888876 899999999876 2
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+..|.|+|. .-+..-+.+.|...+.+++++||..++++
T Consensus 95 --e~ADvvicE--------------------mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 --ENADVVICE--------------------MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred --cccceeHHH--------------------HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 578999863 22334455678889999999999999886
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-07 Score=84.94 Aligned_cols=112 Identities=22% Similarity=0.360 Sum_probs=72.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc-------C----CceEEEecCccccchhhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL-------N----LKATLILSDISKINLKKLYID 200 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~-------g----~~v~~~~~D~~~~~~~~~~~~ 200 (329)
++.+|||||||-||=..-.....-..++|+|++...++.++++.+.+ . ....++.+|.....+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~----- 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR----- 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH-----
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh-----
Confidence 78999999999999877776542279999999999999999998321 1 2256788887653311
Q ss_pred hcccccccccccCC--CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 201 INKKTNNRFRFYKN--KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 201 ~~~~~~~~~~~~~~--~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.. .+||+|=|=- .+++....+. .-+.+|..+...|+|||+++-.|
T Consensus 137 ---------~~~~~~~~~FDvVScQF------------alHY~Fese~------~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 137 ---------EKLPPRSRKFDVVSCQF------------ALHYAFESEE------KARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp ---------CTSSSTTS-EEEEEEES-------------GGGGGSSHH------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---------hhccccCCCcceeehHH------------HHHHhcCCHH------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 11222 4899995411 1122222111 23558999999999999988764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=80.01 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=67.3
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.-+...++..++++|||+|||+|..|..+++... .|+++|+++.+++.+++++.. .-+++++++|+...+.
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~------- 89 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDL------- 89 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCCh-------
Confidence 3344456678899999999999999999998765 899999999999999988754 2237899999987651
Q ss_pred cccccccccccCCCCCC---EEEEccCCc
Q psy15212 202 NKKTNNRFRFYKNKYFD---RILADLPCT 227 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD---~Vl~D~PCs 227 (329)
..|| .|+.++|+.
T Consensus 90 -------------~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 -------------PDFPKQLKVVSNLPYN 105 (253)
T ss_pred -------------hHcCCcceEEEcCChh
Confidence 1355 999999964
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-07 Score=79.98 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=42.5
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
+..+||+||-+|..|+++|+..+ ..|+|+||++..++.++++++..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 56899999999999999999888 69999999999999999998764
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=78.16 Aligned_cols=101 Identities=23% Similarity=0.336 Sum_probs=78.9
Q ss_pred hcC--CCCCCeEEeecCCCchHHHHHHHhCC--C-EEEEEeCChhHHHHHHHHHHHcC--------C---ceEEEecCcc
Q psy15212 127 LLD--IRSGMYVLDACSAPGGKTCHLLEIAD--I-KLISVDNNLSRLNMISENLKRLN--------L---KATLILSDIS 190 (329)
Q Consensus 127 ~l~--~~~g~~VLDlcag~G~kt~~la~~~~--~-~v~avD~~~~rl~~l~~n~~~~g--------~---~v~~~~~D~~ 190 (329)
+|+ .+||...||+|+|+|..|..++.+.+ + ...++|..++.++..++|+.+.- + +..++++|.+
T Consensus 75 ~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 75 YLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred HHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 455 78999999999999999999997766 3 44999999999999999998653 1 1567788877
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
... ....+||+|.|-|--| ++.++.+..|++||+
T Consensus 155 ~g~------------------~e~a~YDaIhvGAaa~----------------------------~~pq~l~dqL~~gGr 188 (237)
T KOG1661|consen 155 KGY------------------AEQAPYDAIHVGAAAS----------------------------ELPQELLDQLKPGGR 188 (237)
T ss_pred ccC------------------CccCCcceEEEccCcc----------------------------ccHHHHHHhhccCCe
Confidence 643 3567999999876533 234555667999999
Q ss_pred EEE
Q psy15212 271 LLF 273 (329)
Q Consensus 271 lvy 273 (329)
|+.
T Consensus 189 lli 191 (237)
T KOG1661|consen 189 LLI 191 (237)
T ss_pred EEE
Confidence 986
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8e-07 Score=88.77 Aligned_cols=169 Identities=17% Similarity=0.121 Sum_probs=112.7
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHcCCc--eEE
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRLNLK--ATL 184 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~g~~--v~~ 184 (329)
|.++--..-+.+.+.++.|+++.+|+|.|||+||..+..++.++ ..++|.|+++.....++.|+--.|+. +.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 88888788889999999998999999999999999999887764 46899999999999999999988886 466
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC-CCC-cccCChhHHHHHHHHH-HHHHHHH
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN-PDI-PWLRRKNDIKKLSKYS-CKILNNL 261 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~-p~~-~~~~~~~~~~~l~~~q-~~lL~~a 261 (329)
.++|...-+.. . ......+||.|+.+||.|+.+...-. ... .|.............. ..++.+.
T Consensus 246 ~~~dtl~~~~~----------~---~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~ 312 (489)
T COG0286 246 RHGDTLSNPKH----------D---DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHI 312 (489)
T ss_pred cccccccCCcc----------c---ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHH
Confidence 66665443200 0 00134689999999999866654321 111 0100000000000001 4578888
Q ss_pred HhcCCCCCEEE--EEcCCCCccccHHHHHHHHhh
Q psy15212 262 WKMLKPGGKLL--FVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 262 ~~~LkpgG~lv--ysTCS~~~~Ene~vv~~~l~~ 293 (329)
...|+|||+.. ...-.+...-+|..|...+-.
T Consensus 313 ~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 313 LYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 88999987433 223334444467777776654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-06 Score=75.53 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=74.8
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+..+|.+.++...+|.--|-||.+..+++.++ ++++|+|.++..++.+++.+..++-.+.+++..+.++.. .+
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-~l---- 89 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-AL---- 89 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH-HH----
Confidence 45677899999999999999999999999887 789999999999999999999988778999988776541 00
Q ss_pred cccccccccccCCCCCCEEEEccCCccc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
......++|.||+|-=-|+.
T Consensus 90 --------~~~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 90 --------KELGIGKVDGILLDLGVSSP 109 (314)
T ss_pred --------HhcCCCceeEEEEeccCCcc
Confidence 00123588999998655543
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-07 Score=79.91 Aligned_cols=110 Identities=18% Similarity=0.276 Sum_probs=80.4
Q ss_pred cccceEEEechh--HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEE
Q psy15212 109 FFNGFCSIQDAA--AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATL 184 (329)
Q Consensus 109 ~~~G~~~~Qd~~--s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~ 184 (329)
+.+|++.+--+. -.++......-.-+.|+|..||-||-|++.|.... .|+++|+++-++..+++|++-+|++ +++
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred cccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEE
Confidence 346777664332 22222222222456899999999999999997654 9999999999999999999999997 899
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
+++|..+.- ..+. +....+|.|+.-||-+|.|..+
T Consensus 148 I~GD~ld~~-~~lq-------------~~K~~~~~vf~sppwggp~y~~ 182 (263)
T KOG2730|consen 148 ICGDFLDLA-SKLK-------------ADKIKYDCVFLSPPWGGPSYLR 182 (263)
T ss_pred EechHHHHH-HHHh-------------hhhheeeeeecCCCCCCcchhh
Confidence 999988753 1111 1223578999999999887754
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=79.04 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=72.8
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.-++...++.+++.||++|+|.|+.|..+++... +|+|+|+|+..+..+++.+. ..-+++++++|+.+.+.
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~------- 90 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDF------- 90 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcc-------
Confidence 4455667788899999999999999999999765 89999999999999999887 22348999999998762
Q ss_pred cccccccccccCCC-CCCEEEEccCCccc
Q psy15212 202 NKKTNNRFRFYKNK-YFDRILADLPCTGS 229 (329)
Q Consensus 202 ~~~~~~~~~~~~~~-~fD~Vl~D~PCsg~ 229 (329)
..- .+++|+.+-||.-+
T Consensus 91 -----------~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 91 -----------PSLAQPYKVVANLPYNIS 108 (259)
T ss_pred -----------hhhcCCCEEEEcCCCccc
Confidence 111 68999999998743
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-06 Score=75.18 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=79.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-----ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-----KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-----~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
...+||=+|.|.|+.+..+.+..+ .+|++||+++..++.+++-+..... +++++.+|+..+-
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l------------ 143 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL------------ 143 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH------------
Confidence 456999999999999999987654 6999999999999999998765321 3899999998764
Q ss_pred cccccccCCC-CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNK-YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~-~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.. ..+ +||+|++|.+- ..|.. .. . .-.++++.+.+.|+|||.++.-.
T Consensus 144 ----~~-~~~~~yDvIi~D~~d-p~~~~-----~~-l-----------~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 144 ----KE-TQEEKYDVIIVDLTD-PDGPA-----PN-L-----------FTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ----HT-SSST-EEEEEEESSS-TTSCG-----GG-G-----------SSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----Hh-ccCCcccEEEEeCCC-CCCCc-----cc-c-----------cCHHHHHHHHhhcCCCcEEEEEc
Confidence 11 224 89999999874 11110 00 1 12467888899999999988754
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=75.24 Aligned_cols=116 Identities=15% Similarity=0.237 Sum_probs=82.2
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eE-EEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-AT-LILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~-~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
..||++|||||..--.+- ..+ ..|+++|.++++-+.+...++...-. +. ++++++.+++ +
T Consensus 78 ~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~----------------~ 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP----------------Q 140 (252)
T ss_pred cceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc----------------c
Confidence 368999999996533322 122 69999999999999999998887544 54 8999999876 2
Q ss_pred ccCCCCCCEEEEccC-CccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 211 FYKNKYFDRILADLP-CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~P-Csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
+.+.++|.|++.-- ||-. -+.+.|.+..++|+|||++++-- |-.+.-.-...
T Consensus 141 -l~d~s~DtVV~TlvLCSve-----------------------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~~n~ 193 (252)
T KOG4300|consen 141 -LADGSYDTVVCTLVLCSVE-----------------------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGFWNR 193 (252)
T ss_pred -cccCCeeeEEEEEEEeccC-----------------------CHHHHHHHHHHhcCCCcEEEEEe---cccccchHHHH
Confidence 35789999986432 5511 15678999999999999998752 22333334444
Q ss_pred HHhh
Q psy15212 290 FSKN 293 (329)
Q Consensus 290 ~l~~ 293 (329)
+++.
T Consensus 194 i~q~ 197 (252)
T KOG4300|consen 194 ILQQ 197 (252)
T ss_pred HHHH
Confidence 4443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=70.18 Aligned_cols=130 Identities=23% Similarity=0.256 Sum_probs=95.3
Q ss_pred hHHHHhhhcC------CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 120 AAQLAAPLLD------IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 120 ~s~l~~~~l~------~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.|.|++.+|. +++|++||=+||++|....|++...+ |.|+|+|.++.....+-..+++. -++-.+.+|++.+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA~~P 136 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDARKP 136 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeecccCCc
Confidence 3677777664 67899999999999999999999988 99999999999999888887763 2366778999886
Q ss_pred chhhhhhhhcccccccccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH-HHHHhcCCCCCE
Q psy15212 193 NLKKLYIDINKKTNNRFRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL-NNLWKMLKPGGK 270 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL-~~a~~~LkpgG~ 270 (329)
. .+ .--+..|+|..|..- .-|.+++ .+|-.+||+||.
T Consensus 137 ~----------------~Y~~~Ve~VDviy~DVAQ-------------------------p~Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 137 E----------------KYRHLVEKVDVIYQDVAQ-------------------------PNQAEILADNAEFFLKKGGY 175 (231)
T ss_pred H----------------HhhhhcccccEEEEecCC-------------------------chHHHHHHHHHHHhcccCCe
Confidence 5 11 112579999998751 1256654 578899999996
Q ss_pred EEEE--cCCCCcc-ccHHHHHHHH
Q psy15212 271 LLFV--TCSLWFE-ESEEQAIIFS 291 (329)
Q Consensus 271 lvys--TCS~~~~-Ene~vv~~~l 291 (329)
++.+ +-|+... +-+++.+.-.
T Consensus 176 ~~i~iKArSIdvT~dp~~vf~~ev 199 (231)
T COG1889 176 VVIAIKARSIDVTADPEEVFKDEV 199 (231)
T ss_pred EEEEEEeecccccCCHHHHHHHHH
Confidence 6665 4455433 4445555343
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=83.61 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=79.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC----C-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA----D-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~----~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+..|||+|||+|..+...++.. + .+|+|+|.++.....+++.+++.+.. |+++.+|+++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~------------ 254 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE------------ 254 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC------------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC------------
Confidence 4679999999999987776544 2 69999999999999999888888884 999999999876
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCcccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEES 283 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~En 283 (329)
.+.++|+|+.-. +|.+.-+ + +--+.|..+-++|||||+++=+.++ +.|-+.
T Consensus 255 -------lpekvDIIVSEl----LGsfg~n---------E-------l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss 307 (448)
T PF05185_consen 255 -------LPEKVDIIVSEL----LGSFGDN---------E-------LSPECLDAADRFLKPDGIMIPSSYTSYLAPISS 307 (448)
T ss_dssp -------HSS-EEEEEE-------BTTBTT---------T-------SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-
T ss_pred -------CCCceeEEEEec----cCCcccc---------c-------cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeC
Confidence 246899999532 2222111 1 1234678888999999999844433 334444
Q ss_pred HHHHH
Q psy15212 284 EEQAI 288 (329)
Q Consensus 284 e~vv~ 288 (329)
+..-+
T Consensus 308 ~~l~~ 312 (448)
T PF05185_consen 308 PKLYQ 312 (448)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-06 Score=73.36 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=72.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|.+||=+| -+-.+...+.+.+ .+|+.+|+++..++-+++..++.|++++.++.|.++.-
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~L---------------- 105 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPL---------------- 105 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS------------------
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccC----------------
Confidence 467887554 5544433333333 79999999999999999999999999999999999853
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc-ccH-HHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE-ESE-EQA 287 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~-Ene-~vv 287 (329)
+..-.++||.++.|||++-.|+ .-+|.++...||.-|...|-..|..+. -.+ ..+
T Consensus 106 P~~~~~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~ 162 (243)
T PF01861_consen 106 PEELRGKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEV 162 (243)
T ss_dssp -TTTSS-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHH
T ss_pred CHHHhcCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHH
Confidence 1112478999999999986554 347899999999766455555554331 122 357
Q ss_pred HHHHhhCCCcEE
Q psy15212 288 IIFSKNHKDSIR 299 (329)
Q Consensus 288 ~~~l~~~~~~~~ 299 (329)
++++.+. ++..
T Consensus 163 Q~~l~~~-gl~i 173 (243)
T PF01861_consen 163 QRFLLEM-GLVI 173 (243)
T ss_dssp HHHHHTS---EE
T ss_pred HHHHHHC-CcCH
Confidence 7777754 4443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=98.29 E-value=8e-07 Score=83.02 Aligned_cols=93 Identities=23% Similarity=0.303 Sum_probs=65.1
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+..+|.++++..++|+--|.||.|.++++..+ ++|+|+|.|+..++.++++++.++-.+.++++++.++. ...
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~--~~l---- 85 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD--EYL---- 85 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH--HHH----
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH--HHH----
Confidence 34566789999999999999999999999877 89999999999999999999877666899999988764 111
Q ss_pred cccccccccc-CCCCCCEEEEccCCccc
Q psy15212 203 KKTNNRFRFY-KNKYFDRILADLPCTGS 229 (329)
Q Consensus 203 ~~~~~~~~~~-~~~~fD~Vl~D~PCsg~ 229 (329)
... ....+|.||+|-=+|+.
T Consensus 86 -------~~~~~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 86 -------KELNGINKVDGILFDLGVSSM 106 (310)
T ss_dssp -------HHTTTTS-EEEEEEE-S--HH
T ss_pred -------HHccCCCccCEEEEccccCHH
Confidence 011 23589999999888765
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.29 E-value=4e-06 Score=73.47 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++++|||+|||+|..+..+++..+..++++|+++.+++.+++ .+ ++++.+|+.... .
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~--~~~~~~d~~~~l----------------~ 69 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG--VNVIQGDLDEGL----------------E 69 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC--CeEEEEEhhhcc----------------c
Confidence 4678999999999999988887655688999999999888754 23 456677765421 0
Q ss_pred ccCCCCCCEEEEcc
Q psy15212 211 FYKNKYFDRILADL 224 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~ 224 (329)
.+.+++||.|++..
T Consensus 70 ~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 70 AFPDKSFDYVILSQ 83 (194)
T ss_pred ccCCCCcCEEEEhh
Confidence 12356899999754
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.9e-06 Score=75.38 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHH-HCCCeeEEeCCceEEEcCCCCCCCCcc
Q psy15212 30 NYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLK-KSGLETTIIGPLAIKLHTPISISKIPK 108 (329)
Q Consensus 30 s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 108 (329)
++|+.+...+.....+ +++.++|....+.... +..+..+.-...++..+- ...+ +|+
T Consensus 7 eL~~~l~~~Fvql~~D-~ET~~FL~~S~e~S~~-~~~ql~~~l~~~~L~~f~S~T~i-------NG~------------- 64 (265)
T PF05219_consen 7 ELPEELQSKFVQLSPD-EETQEFLDRSYEKSDW-FFTQLWHSLASSILSWFMSKTDI-------NGI------------- 64 (265)
T ss_pred cCCHHHHHHHhhcCCC-HHHHHHHHHhHHhHHH-HHHHHHHHHHHHHHHHHHhHHhH-------hhh-------------
Confidence 3899999999998876 8899999876654332 111111111111222111 1000 111
Q ss_pred cccceEEEechhHHHHhhhcCCC--------CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 109 FFNGFCSIQDAAAQLAAPLLDIR--------SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~l~~~--------~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
...|.+++=.. +-...+|... ...++||+|||-|+.|..++.... +|+|-|.|+.|..+ +++.|.
T Consensus 65 LgRG~MFvfS~--~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~r----L~~kg~ 137 (265)
T PF05219_consen 65 LGRGSMFVFSE--EQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWR----LSKKGF 137 (265)
T ss_pred hcCCcEEEecH--HHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHH----HHhCCC
Confidence 01233333211 1122222211 356899999999999999998776 99999999998655 445565
Q ss_pred ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH
Q psy15212 181 KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260 (329)
Q Consensus 181 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~ 260 (329)
. ++..| +.. ..+.+||+|-| ..++.|.-+ ...+|+.
T Consensus 138 ~--vl~~~--~w~------------------~~~~~fDvIsc------LNvLDRc~~----------------P~~LL~~ 173 (265)
T PF05219_consen 138 T--VLDID--DWQ------------------QTDFKFDVISC------LNVLDRCDR----------------PLTLLRD 173 (265)
T ss_pred e--EEehh--hhh------------------ccCCceEEEee------hhhhhccCC----------------HHHHHHH
Confidence 4 22222 222 12357999964 344444321 3568999
Q ss_pred HHhcCCCCCEEEEE
Q psy15212 261 LWKMLKPGGKLLFV 274 (329)
Q Consensus 261 a~~~LkpgG~lvys 274 (329)
+.+.|+|+|+++.+
T Consensus 174 i~~~l~p~G~lilA 187 (265)
T PF05219_consen 174 IRRALKPNGRLILA 187 (265)
T ss_pred HHHHhCCCCEEEEE
Confidence 99999999999987
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.6e-06 Score=73.87 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=77.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHH------------HH-cCCceEEEecCccccchhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL------------KR-LNLKATLILSDISKINLKK 196 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~------------~~-~g~~v~~~~~D~~~~~~~~ 196 (329)
+.+|.+||+.+||.|.-...+|+. |-.|+|+|+|+..++.+.+.. .+ .+..++++++|+..++..
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~- 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI- 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-
Confidence 446789999999999999999985 458999999999999875521 11 134589999999886400
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH-HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL-SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l-~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ...+.||.|. |-- -+..+ ..+..+..++..++|+|||+++..|
T Consensus 119 -------------~-~~~~~fD~Vy-Dra--------------------~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 -------------A-NNLPVFDIWY-DRG--------------------AYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred -------------c-cccCCcCeee-eeh--------------------hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0 0125799986 110 11111 1233457888889999999988876
Q ss_pred CCC
Q psy15212 276 CSL 278 (329)
Q Consensus 276 CS~ 278 (329)
-..
T Consensus 164 ~~~ 166 (226)
T PRK13256 164 MEH 166 (226)
T ss_pred Eec
Confidence 543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.3e-06 Score=70.76 Aligned_cols=97 Identities=24% Similarity=0.273 Sum_probs=76.9
Q ss_pred eEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+++|+|+|.|-=++.+|-..+ .+++.+|.+.+++.-+++-...+|++ +++++.++.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------------------- 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE------------------- 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-------------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-------------------
Confidence 899999999999999988777 79999999999999999999999998 999999887722
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
....||.|++=|=.+ ...+++-+..++++||+++.---
T Consensus 112 ~~~~fd~v~aRAv~~--------------------------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 112 YRESFDVVTARAVAP--------------------------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp TTT-EEEEEEESSSS--------------------------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred cCCCccEEEeehhcC--------------------------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 347899998533211 23578889999999998876533
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-06 Score=77.18 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+..|||+|||+|..+...|+....+|+|+|-|.-. +.+++.+..+++. ++++.+.+.+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~---------------- 122 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE---------------- 122 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe----------------
Confidence 578999999999999999998665899999976655 9999999999997 789888888765
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
++.++.|+|+.. |. ....-+..+....|-+==+.|+|||.++=++|+++-
T Consensus 123 --LP~eKVDiIvSE----------------WM---Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 123 --LPVEKVDIIVSE----------------WM---GYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred --cCccceeEEeeh----------------hh---hHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 234789999831 21 111111122233333334789999999888888663
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.1e-05 Score=69.30 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.-+|||+|||+|.--+-+.+..+ ..|.-.|.++.-++..++.++..|+. +++.++|+.+..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-------------- 201 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-------------- 201 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh--------------
Confidence 45899999999998887776655 58999999999999999999999997 499999998754
Q ss_pred ccccc-CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 208 RFRFY-KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 208 ~~~~~-~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.+. .....+++++ +|+..--|| .+ +-.+.|......+.|||+|||..=-+||+ -+.
T Consensus 202 --~l~~l~p~P~l~iV------sGL~ElF~D-------n~------lv~~sl~gl~~al~pgG~lIyTgQPwHPQ--le~ 258 (311)
T PF12147_consen 202 --SLAALDPAPTLAIV------SGLYELFPD-------ND------LVRRSLAGLARALEPGGYLIYTGQPWHPQ--LEM 258 (311)
T ss_pred --HhhccCCCCCEEEE------ecchhhCCc-------HH------HHHHHHHHHHHHhCCCcEEEEcCCCCCcc--hHH
Confidence 110 1235688875 444322222 11 23345777888899999999988788884 456
Q ss_pred HHHHHhhCCC
Q psy15212 287 AIIFSKNHKD 296 (329)
Q Consensus 287 v~~~l~~~~~ 296 (329)
|+..|..|.+
T Consensus 259 IAr~LtsHr~ 268 (311)
T PF12147_consen 259 IARVLTSHRD 268 (311)
T ss_pred HHHHHhcccC
Confidence 8999998853
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=71.41 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--Cc--eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--LK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...|.+||++|||.|--++.++.+.+ .+|++-|.++ .++.++.|++.++ .. +.+...|=.+....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~--------- 112 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDS--------- 112 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHH---------
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccc---------
Confidence 34678999999999999999998734 7999999999 9999999999887 22 55555443221100
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
.......||+||. + |+-|. . .....+++...++++++|.++.+ +.....
T Consensus 113 -----~~~~~~~~D~Ila------s-------Dv~Y~--~-------~~~~~L~~tl~~ll~~~~~vl~~-~~~R~~ 161 (173)
T PF10294_consen 113 -----DLLEPHSFDVILA------S-------DVLYD--E-------ELFEPLVRTLKRLLKPNGKVLLA-YKRRRK 161 (173)
T ss_dssp -----HHHS-SSBSEEEE------E-------S--S---G-------GGHHHHHHHHHHHBTT-TTEEEE-EE-S-T
T ss_pred -----cccccccCCEEEE------e-------cccch--H-------HHHHHHHHHHHHHhCCCCEEEEE-eCEecH
Confidence 1123468999984 1 22221 1 22345677777789999984444 444433
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.1e-06 Score=80.87 Aligned_cols=101 Identities=25% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+-+|||.-||+|.-++..+...+ .+|+++|+|+..++.++.|++.+++. +++.+.|+..+-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll-------------- 115 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL-------------- 115 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH--------------
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh--------------
Confidence 34899999999999999998744 69999999999999999999999986 478888887642
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. .....||+|=+||==| -..+|+.|++.++.|| +++.|||
T Consensus 116 --~-~~~~~fD~IDlDPfGS--------------------------p~pfldsA~~~v~~gG-ll~vTaT 155 (377)
T PF02005_consen 116 --Y-SRQERFDVIDLDPFGS--------------------------PAPFLDSALQAVKDGG-LLCVTAT 155 (377)
T ss_dssp --C-HSTT-EEEEEE--SS----------------------------HHHHHHHHHHEEEEE-EEEEEE-
T ss_pred --h-hccccCCEEEeCCCCC--------------------------ccHhHHHHHHHhhcCC-EEEEecc
Confidence 0 1357899999998422 2358999999999998 4556666
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.5e-05 Score=68.95 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC----Cc-eEEEecCccccchhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN----LK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g----~~-v~~~~~D~~~~~~~~~~ 198 (329)
+.+..+.+ .+||=+|-|.|+.+-.+++..+ .+++.||+++..++.+++-+.... -+ ++++..|+.++-
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v----- 143 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL----- 143 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH-----
Confidence 33344666 5999999999999999998876 799999999999999999887654 12 789999998864
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. ...+||+|++|---- .|. . +.. ...++.+.+.+.|+++|.++.-+-|
T Consensus 144 -----------~~-~~~~fDvIi~D~tdp-~gp---~-~~L-------------ft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 144 -----------RD-CEEKFDVIIVDSTDP-VGP---A-EAL-------------FTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred -----------Hh-CCCcCCEEEEcCCCC-CCc---c-ccc-------------CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 11 234899999985311 011 0 001 2356889999999999999887544
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=72.44 Aligned_cols=124 Identities=16% Similarity=0.247 Sum_probs=89.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...+.++++.||++|-|||..|..|.+... +|+|+|+++.++..++++.+-.-.. .+++++|+.+.+
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 3344688999999999999999999998654 9999999999999999999866543 789999998865
Q ss_pred ccccccccccCCCCCCEEEEccCC--cccccccc--CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPC--TGSGVVRR--NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PC--sg~G~~~~--~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
...||.++.+-|+ |+.+++.- ++.+.|. ...-+|+++ |.+++..-|-..|+--|+
T Consensus 121 -----------~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~-------AvlmfQ~Ef---a~RLva~pgd~~Ycrlsi 179 (315)
T KOG0820|consen 121 -----------LPRFDGCVSNLPYQISSPLVFKLLLHRPVFRC-------AVLMFQREF---ALRLVARPGDSLYCRLSI 179 (315)
T ss_pred -----------CcccceeeccCCccccCHHHHHhcCCCCCcce-------eeeehhhhh---hhhhccCCCCchhceeeh
Confidence 2479999999997 55555432 3333321 112245544 555666667777754444
Q ss_pred C
Q psy15212 279 W 279 (329)
Q Consensus 279 ~ 279 (329)
.
T Consensus 180 n 180 (315)
T KOG0820|consen 180 N 180 (315)
T ss_pred h
Confidence 3
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=66.33 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=85.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...++..|--||++|.|+|-+|-.+.+++- ..++++|.|++-...+.+.... ++++++|+..+.- ++
T Consensus 41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~----~~ii~gda~~l~~---~l--- 110 (194)
T COG3963 41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----VNIINGDAFDLRT---TL--- 110 (194)
T ss_pred HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC----ccccccchhhHHH---HH---
Confidence 3344688898999999999999999998754 6999999999999887765432 5688999877540 00
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
....+..||.|++-.|--+.- . ..-.++|+.+...|.+||.+|--|-+
T Consensus 111 -------~e~~gq~~D~viS~lPll~~P-------------~-------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 -------GEHKGQFFDSVISGLPLLNFP-------------M-------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -------hhcCCCeeeeEEeccccccCc-------------H-------HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 123567899999877732111 0 12346899999999999999876655
|
|
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=71.50 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=75.0
Q ss_pred CeEEeecCCCchHHHHHHHhCC----------CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD----------IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~----------~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.+|+|+||+||+++-.+++.+- .+|+|||+.+-. -++ |..+.+|.+...-.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~sta------- 104 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTA------- 104 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHH-------
Confidence 5899999999999999987642 249999985421 234 66778898875410
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH----HHhcCCCCCEEEEEcCCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN----LWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~----a~~~LkpgG~lvysTCS~ 278 (329)
..-+..+.+++.|.|+||-.---+|+ .++.++. |.++|.. +...|||||.+| --+
T Consensus 105 ---e~Ii~hfggekAdlVvcDGAPDvTGl-------------Hd~DEy~--Q~qLllaAl~i~t~Vlk~Gg~FV---aKi 163 (294)
T KOG1099|consen 105 ---EAIIEHFGGEKADLVVCDGAPDVTGL-------------HDLDEYV--QAQLLLAALNIATCVLKPGGSFV---AKI 163 (294)
T ss_pred ---HHHHHHhCCCCccEEEeCCCCCcccc-------------ccHHHHH--HHHHHHHHHHHHhheecCCCeee---hhh
Confidence 00112345679999999965333333 3455554 4444544 457899999998 356
Q ss_pred CccccHHHHH
Q psy15212 279 WFEESEEQAI 288 (329)
Q Consensus 279 ~~~Ene~vv~ 288 (329)
+..++-..+.
T Consensus 164 fRg~~tslLy 173 (294)
T KOG1099|consen 164 FRGRDTSLLY 173 (294)
T ss_pred hccCchHHHH
Confidence 6666655443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.9e-05 Score=67.46 Aligned_cols=114 Identities=20% Similarity=0.168 Sum_probs=80.4
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
....+..+..+|+|+|.|.|..+..+++..+ .+++..|. +..++.+++ .-.++++.+|+....
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~---------- 156 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPL---------- 156 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCC----------
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhh----------
Confidence 3445566677999999999999999999988 79999998 777777777 223899999988321
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC--CEEEEEcCCCCcc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG--GKLLFVTCSLWFE 281 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg--G~lvysTCS~~~~ 281 (329)
+. +|+|++- . +...|+.++. ..||+++.+.|+|| |+|+....-+...
T Consensus 157 ----------P~-~D~~~l~------~-------vLh~~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 157 ----------PV-ADVYLLR------H-------VLHDWSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp ----------SS-ESEEEEE------S-------SGGGS-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred ----------cc-ccceeee------h-------hhhhcchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 23 9999861 1 1223444443 56899999999999 9999887655444
Q ss_pred ccHH
Q psy15212 282 ESEE 285 (329)
Q Consensus 282 Ene~ 285 (329)
..+.
T Consensus 206 ~~~~ 209 (241)
T PF00891_consen 206 RTGP 209 (241)
T ss_dssp SSSH
T ss_pred CCCc
Confidence 4333
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=64.38 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=76.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
+.+|+|+|+|.|-=++.+|-..+ .+|+-+|...+|+.-++.-.+.+|++ ++++++.+.++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~----------------- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG----------------- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc-----------------
Confidence 57999999999999999885455 67999999999999999999999998 999999888765
Q ss_pred ccCCCC-CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 211 FYKNKY-FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 211 ~~~~~~-fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
.... ||.|.+=|=++ -..+.+-+..++|+||.++
T Consensus 131 --~~~~~~D~vtsRAva~--------------------------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 131 --QEKKQYDVVTSRAVAS--------------------------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred --cccccCcEEEeehccc--------------------------hHHHHHHHHHhcccCCcch
Confidence 1223 99998533222 1346777889999988765
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.2e-05 Score=68.88 Aligned_cols=40 Identities=28% Similarity=0.264 Sum_probs=34.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHH
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNM 170 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~ 170 (329)
.+|..|||+|||||++|..+++....+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3678999999999999999998633699999999987764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-05 Score=65.32 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=57.8
Q ss_pred EEEeCChhHHHHHHHHHHHcC---C-ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 159 ISVDNNLSRLNMISENLKRLN---L-KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 159 ~avD~~~~rl~~l~~n~~~~g---~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
+|+|+|+.+++.++++.+..+ . .++++.+|+.+++ +.++.||.|++. .+. +.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp------------------~~~~~fD~v~~~-----~~l-~~ 56 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP------------------FDDCEFDAVTMG-----YGL-RN 56 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC------------------CCCCCeeEEEec-----chh-hc
Confidence 489999999999988765432 2 3789999998876 356789999852 111 11
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
-+ -..+.|+++.+.|||||+++....+
T Consensus 57 ~~----------------d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 57 VV----------------DRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CC----------------CHHHHHHHHHHHcCcCeEEEEEECC
Confidence 11 1356899999999999999887655
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=7e-05 Score=69.82 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|..|||+|||+|..+..+|+....+|+|+|- .++.+.++..++.+.+. +.++.+...++.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---------------- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIE---------------- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCcccccc----------------
Confidence 36789999999999999888765589999995 46888889888888774 778888777665
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCccccHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEESEE 285 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~Ene~ 285 (329)
.+++.|+||..| +|.+ ..++.. .+---+|.++|||.|.++=..-- +.|--+|.
T Consensus 240 ---LPEk~DviISEP----MG~m--------L~NERM--------LEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~ 294 (517)
T KOG1500|consen 240 ---LPEKVDVIISEP----MGYM--------LVNERM--------LESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQ 294 (517)
T ss_pred ---CchhccEEEecc----chhh--------hhhHHH--------HHHHHHHHhhcCCCCcccCcccceeecccchHH
Confidence 357899999765 2332 111111 11223566999999988633322 23444444
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=68.25 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=65.7
Q ss_pred HHhhhcCCCCCC-eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhh
Q psy15212 123 LAAPLLDIRSGM-YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYI 199 (329)
Q Consensus 123 l~~~~l~~~~g~-~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~ 199 (329)
+...+....++. .++|+|||+|-.+..+|+... +|+|+|+|+.+|+.++......-.. ..+...+...+.
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~------ 95 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL------ 95 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh-hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc------
Confidence 333344455555 799999999966666676655 9999999999999777654322221 333333333322
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
-.+++.|.|++ +-|- +|- --.++.+.+.+.||+.|
T Consensus 96 ------------g~e~SVDlI~~-Aqa~-----------HWF-----------dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 96 ------------GGEESVDLITA-AQAV-----------HWF-----------DLERFYKEAYRVLRKDG 130 (261)
T ss_pred ------------CCCcceeeehh-hhhH-----------Hhh-----------chHHHHHHHHHHcCCCC
Confidence 12578999985 1111 221 12357788899999876
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00031 Score=70.65 Aligned_cols=147 Identities=13% Similarity=0.117 Sum_probs=92.0
Q ss_pred cceEEEechhHHHHhhhcCCC--CCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHcCCc--
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIR--SGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRLNLK-- 181 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~--~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~g~~-- 181 (329)
.|.++.-..-+.+.+.++.+. |++.|.|+|||+|+.........+ ..+++.+....+...++.|+.-.+..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 466777666677777777764 678999999999998876554332 47899999999999999998766653
Q ss_pred -eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccc---cccccCCCCcccCChhHHHHHHHHHHHH
Q psy15212 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS---GVVRRNPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 182 -v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~---G~~~~~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
.....+|..... .+....+||.|+.|||.+.. |.+....+..+.+....+..+.......
T Consensus 274 t~~~~~~dtl~~~----------------d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~af 337 (501)
T TIGR00497 274 NFNIINADTLTTK----------------EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAF 337 (501)
T ss_pred ccCcccCCcCCCc----------------cccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHH
Confidence 223334432211 11223579999999999853 1111000111111000011223345678
Q ss_pred HHHHHhcCCCCCEEEE
Q psy15212 258 LNNLWKMLKPGGKLLF 273 (329)
Q Consensus 258 L~~a~~~LkpgG~lvy 273 (329)
+.++...|++||+...
T Consensus 338 i~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 338 VLHALYVLGQEGTAAI 353 (501)
T ss_pred HHHHHHhcCCCCeEEE
Confidence 8889999999997443
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.8e-05 Score=70.65 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=87.4
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC-------CceEEEecCccccc
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN-------LKATLILSDISKIN 193 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g-------~~v~~~~~D~~~~~ 193 (329)
|+|+-... ++++.++|||||-||=.+-.-...=+.++++||.+-.++.++.+.+.+. ..+.++.+|...-.
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 56665554 5789999999999998877664322799999999999998888765432 23678888877643
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
+.. +++ ..+.+||+|=|--.| +|.+..+. .-+.+|.++++.|+|||+++=
T Consensus 186 l~d-----------~~e-~~dp~fDivScQF~~------------HYaFetee------~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 186 LMD-----------LLE-FKDPRFDIVSCQFAF------------HYAFETEE------SARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHH-----------hcc-CCCCCcceeeeeeeE------------eeeeccHH------HHHHHHHHHHhhcCCCcEEEE
Confidence 211 111 123349988542221 22222211 124579999999999998874
Q ss_pred EcCCCCccccHHHHHHHHhhC
Q psy15212 274 VTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 274 sTCS~~~~Ene~vv~~~l~~~ 294 (329)
. -.|-++|-+=|+..
T Consensus 236 T------iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 236 T------IPDSDVIIKRLRAG 250 (389)
T ss_pred e------cCcHHHHHHHHHhc
Confidence 2 23555665555543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.88 E-value=1e-05 Score=72.48 Aligned_cols=110 Identities=23% Similarity=0.243 Sum_probs=72.6
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH-c-----------CC-ceEEEecCccccchh
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR-L-----------NL-KATLILSDISKINLK 195 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~-~-----------g~-~v~~~~~D~~~~~~~ 195 (329)
...++.+||+.|||.|.-...+|+. |-.|+|+|+|+..++.+.+.... . .. .++++++|+..+.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~-- 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP-- 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG--
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC--
Confidence 4567789999999999999999986 45999999999999987332111 1 11 1578899998865
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.. ..++||.|. | |+..-.+ +|+ ...+..++..++|+|||++++.|
T Consensus 111 --------------~~-~~g~fD~iy-D--r~~l~Al--pp~---------------~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 111 --------------PE-DVGKFDLIY-D--RTFLCAL--PPE---------------MRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp --------------GS-CHHSEEEEE-E--CSSTTTS---GG---------------GHHHHHHHHHHCEEEEEEEEEEE
T ss_pred --------------hh-hcCCceEEE-E--ecccccC--CHH---------------HHHHHHHHHHHHhCCCCcEEEEE
Confidence 11 124799996 2 1111111 122 12346777888999999966655
Q ss_pred C
Q psy15212 276 C 276 (329)
Q Consensus 276 C 276 (329)
-
T Consensus 156 l 156 (218)
T PF05724_consen 156 L 156 (218)
T ss_dssp E
T ss_pred E
Confidence 3
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00021 Score=63.32 Aligned_cols=118 Identities=20% Similarity=0.164 Sum_probs=85.1
Q ss_pred EEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
|.|+||-=|.....|++... .+++|+|+++.-++.++++++++|+. +++..+|....- .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l------------------~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL------------------K 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc------------------C
Confidence 68999999999999998655 58999999999999999999999986 899999977642 1
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHh
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSK 292 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~ 292 (329)
+.+..|.|+. .|+|- .+..+||++....++...+||. .|..+...+..+|.
T Consensus 63 ~~e~~d~ivI----AGMGG--------------------~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~ 113 (205)
T PF04816_consen 63 PGEDVDTIVI----AGMGG--------------------ELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLY 113 (205)
T ss_dssp GGG---EEEE----EEE-H--------------------HHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHH
T ss_pred CCCCCCEEEE----ecCCH--------------------HHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHH
Confidence 2233677774 45553 2356789998888877778886 46678888999998
Q ss_pred hCCCcEEec
Q psy15212 293 NHKDSIRLN 301 (329)
Q Consensus 293 ~~~~~~~~~ 301 (329)
.+ +|.++.
T Consensus 114 ~~-gf~I~~ 121 (205)
T PF04816_consen 114 EN-GFEIID 121 (205)
T ss_dssp HT-TEEEEE
T ss_pred HC-CCEEEE
Confidence 87 666543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.6e-05 Score=70.48 Aligned_cols=167 Identities=18% Similarity=0.176 Sum_probs=94.8
Q ss_pred HHHHHHhCCChHHHHHHHHHhCC--CCCeeEEEcCCCCCHH-H-----------HHHHHHHCCCeeEEe---CC--ceEE
Q psy15212 36 INQVKITYPNFFQWKNILDVGHK--KPPLTLRINQRKTTLI-S-----------YNKLLKKSGLETTII---GP--LAIK 96 (329)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~~~~--~~p~~~RvN~~k~~~~-~-----------~~~~l~~~g~~~~~~---~~--~~~~ 96 (329)
+....+.+|..+++..+++++.. +.--.+||-+.-++.. + +.+.|++.|+-...- .| ..+.
T Consensus 73 ~~~~~~~lp~~DRi~pi~~~~~~~~~~~~~l~vE~pDtne~k~l~~fcrkf~~pLr~aL~~~g~l~~~~~~~~p~lh~~f 152 (357)
T PRK11760 73 VGELLKDLPPEDRISPIVAALQGVVPKFGELRVETPDTNEGKELSKFCRKFTVPLRQALRKAGVLTAKENPKRPVLHVFF 152 (357)
T ss_pred hhhHhhcCCcccchHHHHHHHhhcccccceeEEecCCCccchHHHHHHHHhHHHHHHHHHhCCccCCccCCCCcEEEEEE
Confidence 45555667765678888888863 3335677776644322 1 334566766543211 01 1111
Q ss_pred EcCC------CCCCCCcccccceEEEech---hHHHHhhhc--------------CCCCCCeEEeecCCCchHHHHHHHh
Q psy15212 97 LHTP------ISISKIPKFFNGFCSIQDA---AAQLAAPLL--------------DIRSGMYVLDACSAPGGKTCHLLEI 153 (329)
Q Consensus 97 ~~~~------~~~~~~~~~~~G~~~~Qd~---~s~l~~~~l--------------~~~~g~~VLDlcag~G~kt~~la~~ 153 (329)
+.+. ....++..|-.|-.-+..+ -|.-.-.+. .+.+|.++||+||+|||.|-.++++
T Consensus 153 ~~~~~~~vG~s~~~~~s~~~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 153 IAPGCCYVGYSYSNNSSPWPMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred EeCCEEEEEeccCCCCCcCCCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc
Confidence 1110 1113344455565544332 232221111 1368999999999999999999986
Q ss_pred CCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 154 ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 154 ~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+++|+|||..+ +...+... -.|+...+|..... + ..+.+|.|+||.-|.
T Consensus 233 -G~~V~AVD~g~-----l~~~L~~~-~~V~h~~~d~fr~~----------------p--~~~~vDwvVcDmve~ 281 (357)
T PRK11760 233 -GMFVTAVDNGP-----MAQSLMDT-GQVEHLRADGFKFR----------------P--PRKNVDWLVCDMVEK 281 (357)
T ss_pred -CCEEEEEechh-----cCHhhhCC-CCEEEEeccCcccC----------------C--CCCCCCEEEEecccC
Confidence 45999999543 22222221 12677777766543 1 146899999998766
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=65.36 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=67.6
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHH-------HcCCc---eEEEecCccccch
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK-------RLNLK---ATLILSDISKINL 194 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~-------~~g~~---v~~~~~D~~~~~~ 194 (329)
..+++.+++.++|+|||.|...+++|...+ .+.+|+|+.+...+.++.+.+ .+|.. +++..+|+.+.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 456788999999999999999999887767 579999999998877665433 34553 6788888876541
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.. .. -...|+|+++-=|.+. ++ ..-|...+..||+|-++| |
T Consensus 116 ~~-------------~~--~s~AdvVf~Nn~~F~~----------------~l-------~~~L~~~~~~lk~G~~II-s 156 (205)
T PF08123_consen 116 VK-------------DI--WSDADVVFVNNTCFDP----------------DL-------NLALAELLLELKPGARII-S 156 (205)
T ss_dssp HH-------------HH--GHC-SEEEE--TTT-H----------------HH-------HHHHHHHHTTS-TT-EEE-E
T ss_pred Hh-------------hh--hcCCCEEEEeccccCH----------------HH-------HHHHHHHHhcCCCCCEEE-E
Confidence 10 00 1357999998766522 11 112344455678776655 7
Q ss_pred cCCCCcc
Q psy15212 275 TCSLWFE 281 (329)
Q Consensus 275 TCS~~~~ 281 (329)
|-++.+.
T Consensus 157 ~~~~~~~ 163 (205)
T PF08123_consen 157 TKPFCPR 163 (205)
T ss_dssp SS-SS-T
T ss_pred CCCcCCC
Confidence 7666654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.1e-05 Score=67.85 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=74.8
Q ss_pred eEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+||.+|||.|.....+.+-.+ -+|+|+|.|+..++.++++....--.+...+.|++...+. ..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~--------------~~ 139 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLK--------------EP 139 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhcc--------------CC
Confidence 899999999999999988655 4999999999999999998876554466677777654310 11
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+.+|.|.+=---| - ..++ .+...++...++|||||.|++-
T Consensus 140 ~~~~svD~it~IFvLS------A-------i~pe-------k~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLS------A-------IHPE-------KMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred CCcCccceEEEEEEEe------c-------cChH-------HHHHHHHHHHHHhCCCcEEEEe
Confidence 2456788765311001 0 0111 2345688899999999999975
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00048 Score=60.69 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=43.8
Q ss_pred chhHHHHhhhcCCCC---CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHH
Q psy15212 118 DAAAQLAAPLLDIRS---GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 118 d~~s~l~~~~l~~~~---g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~ 177 (329)
..+|-+.-..+...+ +-.++|.|||.|...+.+.-+-+ ..|+|.|+++..++.++.|+.-
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 455666655554332 23799999999999998886554 6999999999999998888763
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.7e-05 Score=71.48 Aligned_cols=101 Identities=24% Similarity=0.248 Sum_probs=81.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
..+|+|.-+|+|.-++.+|.-.+ .+|+.+|+|+..++.+++|++.+ +.+..+++.|+..+- .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm-~--------------- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL-H--------------- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH-H---------------
Confidence 56999999999999999998777 49999999999999999999999 445777778876543 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
-....||+|=+||==| ...+++.|++.++.||.|.. |||
T Consensus 117 -~~~~~fd~IDiDPFGS--------------------------PaPFlDaA~~s~~~~G~l~v-TAT 155 (380)
T COG1867 117 -ELHRAFDVIDIDPFGS--------------------------PAPFLDAALRSVRRGGLLCV-TAT 155 (380)
T ss_pred -hcCCCccEEecCCCCC--------------------------CchHHHHHHHHhhcCCEEEE-Eec
Confidence 1236899999998422 23579999999999997765 444
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.5e-06 Score=64.45 Aligned_cols=99 Identities=24% Similarity=0.194 Sum_probs=42.2
Q ss_pred EeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 137 LDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 137 LDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
|++|++.|.-|..+++.+. ++++++|..+. .+..++.+++.++. ++++.+|....- +
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l-~--------------- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFL-P--------------- 63 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHH-H---------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHH-H---------------
Confidence 5789999999999998765 37999999996 44455555555554 889999986642 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.+..++||.|++|.+-+.. ....-++.+.+.|+|||.+++-.
T Consensus 64 ~~~~~~~dli~iDg~H~~~-----------------------~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 64 SLPDGPIDLIFIDGDHSYE-----------------------AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHHH--EEEEEEES---HH-----------------------HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred HcCCCCEEEEEECCCCCHH-----------------------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1124689999999863311 23446888999999999998743
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.78 E-value=9e-05 Score=68.22 Aligned_cols=90 Identities=23% Similarity=0.284 Sum_probs=69.5
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
..-++..+++.+++.|||+|+|+|..|..+++.. .+++++|+++..++.+++.+. ..-.++++.+|+..+....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~---- 92 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYD---- 92 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGG----
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHH----
Confidence 3444556678899999999999999999999887 599999999999999998776 2223899999999876110
Q ss_pred hcccccccccccCCCCCCEEEEccCCc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
........|+.+.|++
T Consensus 93 -----------~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 93 -----------LLKNQPLLVVGNLPYN 108 (262)
T ss_dssp -----------HCSSSEEEEEEEETGT
T ss_pred -----------hhcCCceEEEEEeccc
Confidence 0123566899999974
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=67.58 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.|.+|||+|+|+|--++..+......|++.|+++...+.++-|.+.+|+.+.++..|... +
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~------------------ 139 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S------------------ 139 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C------------------
Confidence 488999999999998888886544799999999999999999999999999999888665 2
Q ss_pred cCCCCCCEEEE
Q psy15212 212 YKNKYFDRILA 222 (329)
Q Consensus 212 ~~~~~fD~Vl~ 222 (329)
+..||+||+
T Consensus 140 --~~~~Dl~La 148 (218)
T COG3897 140 --PPAFDLLLA 148 (218)
T ss_pred --CcceeEEEe
Confidence 467999995
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.5e-05 Score=70.76 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=60.2
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
+|+|+|||.||.+..+.+..-..++++|+++..++..+.|.... ++.+|..++. .....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~----------------~~~~~ 60 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-----LIEGDITKID----------------EKDFI 60 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCc----------------hhhcC
Confidence 68999999999988887642257899999999999999887432 5667777764 10002
Q ss_pred CCCCEEEEccCCcccccccc
Q psy15212 215 KYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~ 234 (329)
..+|+|+.+|||.+....++
T Consensus 61 ~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 61 PDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred CCCCEEEeCCCChhhhHHhh
Confidence 46999999999988777655
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0004 Score=61.14 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-e-EEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-A-TLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v-~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+.+||+++||+|-.+.+.|+.++ ..-.-.|.++..+..++..+...+++ + ..+..|+....-+ ....
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~--------~~~~- 95 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP--------WELP- 95 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc--------cccc-
Confidence 344699999999999999999998 57778899999999999999888876 2 4556677654200 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE-EEcCCC----Ccccc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL-FVTCSL----WFEES 283 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv-ysTCS~----~~~En 283 (329)
.......||.|++ .. + -++... ..-..+++.|.++|++||.|+ |.--.. .++-|
T Consensus 96 -~~~~~~~~D~i~~----~N--~-------------lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN 154 (204)
T PF06080_consen 96 -APLSPESFDAIFC----IN--M-------------LHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESN 154 (204)
T ss_pred -cccCCCCcceeee----hh--H-------------HHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHH
Confidence 0012458999984 11 1 111111 123458999999999999654 554332 23444
Q ss_pred HHHHHHHHh-hCCC
Q psy15212 284 EEQAIIFSK-NHKD 296 (329)
Q Consensus 284 e~vv~~~l~-~~~~ 296 (329)
+. ....|+ +.|.
T Consensus 155 ~~-FD~sLr~rdp~ 167 (204)
T PF06080_consen 155 AA-FDASLRSRDPE 167 (204)
T ss_pred HH-HHHHHhcCCCC
Confidence 44 444554 3443
|
The function of this family is unknown. |
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=3e-05 Score=75.63 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=85.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
-.++-+|||.-+|+|--++..|...+ .+|+|+|.++..++..++|++.+++. ++..+.|+...-..
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~---------- 176 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE---------- 176 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh----------
Confidence 34567999999999999999998887 69999999999999999999999886 67788887654210
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.......||+|=+||==| -..+|+.|++.++.|| |++.|||
T Consensus 177 ----~~~~~~~FDvIDLDPyGs--------------------------~s~FLDsAvqav~~gG-LL~vT~T 217 (525)
T KOG1253|consen 177 ----HPMVAKFFDVIDLDPYGS--------------------------PSPFLDSAVQAVRDGG-LLCVTCT 217 (525)
T ss_pred ----ccccccccceEecCCCCC--------------------------ccHHHHHHHHHhhcCC-EEEEEec
Confidence 001236899999998422 1247999999999999 5567887
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00022 Score=62.88 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=84.5
Q ss_pred cceEEEechhHHHHhhhc--CCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCceE
Q psy15212 111 NGFCSIQDAAAQLAAPLL--DIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLKAT 183 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l--~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~v~ 183 (329)
-|.-.+|.+.-+++-+.+ +.+| +.|+.+|.+-||-++..|.++ + ++|+++|++-...........-+.-.++
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~ 88 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRIT 88 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEE
T ss_pred CCeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceE
Confidence 367777888777766644 3555 599999999999998887643 2 7999999965554332222222222389
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++.+|..+... +. .-...........|+.|.--+.. .....|+.-..
T Consensus 89 ~i~Gds~d~~~--~~--------~v~~~~~~~~~vlVilDs~H~~~-----------------------hvl~eL~~y~p 135 (206)
T PF04989_consen 89 FIQGDSIDPEI--VD--------QVRELASPPHPVLVILDSSHTHE-----------------------HVLAELEAYAP 135 (206)
T ss_dssp EEES-SSSTHH--HH--------TSGSS----SSEEEEESS----S-----------------------SHHHHHHHHHH
T ss_pred EEECCCCCHHH--HH--------HHHHhhccCCceEEEECCCccHH-----------------------HHHHHHHHhCc
Confidence 99999877541 00 00000112345688888653211 13445777888
Q ss_pred cCCCCCEEEEEc--CCCCccc------------cHHHHHHHHhhCCCcEEec
Q psy15212 264 MLKPGGKLLFVT--CSLWFEE------------SEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 264 ~LkpgG~lvysT--CS~~~~E------------ne~vv~~~l~~~~~~~~~~ 301 (329)
++++|+++|... |+..++. -...|..||+.|++|+.-.
T Consensus 136 lv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 136 LVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp T--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEEET
T ss_pred cCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEecc
Confidence 999999987542 1122221 2456899999999976544
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0008 Score=55.43 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=45.2
Q ss_pred CCCCCeEEeecCCCch-HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 130 IRSGMYVLDACSAPGG-KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~-kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
...+.+|||+|+|+|. .+..+++ .+..|+|+|+++.+++.++++ + ++++..|..+..
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~----~--~~~v~dDlf~p~ 71 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL----G--LNAFVDDLFNPN 71 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh----C--CeEEECcCCCCC
Confidence 3456799999999996 6666665 467999999999988877665 3 578889988865
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=57.98 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=69.2
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 157 KLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 157 ~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
+|+|+|+.++.++..+++++..++. ++++...-..+. .+...+.+|.|+. +.|.+-.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~----------------~~i~~~~v~~~iF-----NLGYLPg 59 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD----------------EYIPEGPVDAAIF-----NLGYLPG 59 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG----------------GT--S--EEEEEE-----EESB-CT
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH----------------hhCccCCcCEEEE-----ECCcCCC
Confidence 6999999999999999999999884 788877666654 2323347888875 4565532
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc--ccHHHHHHHHhhCC--CcEEe
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE--ESEEQAIIFSKNHK--DSIRL 300 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~--Ene~vv~~~l~~~~--~~~~~ 300 (329)
. ...+......-..-|+.|+++|+|||.++...-.-|+. |-.+.|..|++..+ .|.+.
T Consensus 60 g--------Dk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 60 G--------DKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp S---------TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred C--------CCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 1 11111122233456889999999999998887777763 33334555665542 45443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0007 Score=59.67 Aligned_cols=139 Identities=17% Similarity=0.133 Sum_probs=76.4
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~ 198 (329)
|--.++..+....++-.|-|+|||-+..+..+.. +-+|.+.|+... .-.++.+|+.+.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vP----- 117 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVP----- 117 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S-----
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCc-----
Confidence 3333444444444467999999999977644321 147999998432 1247789998877
Q ss_pred hhhcccccccccccCCCCCCEEEEccCC-ccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc-C
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPC-TGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-C 276 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PC-sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT-C 276 (329)
+.++..|++++ | |=+|+ -...+|.+|.+.||+||.|.++- +
T Consensus 118 -------------L~~~svDv~Vf---cLSLMGT---------------------n~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 118 -------------LEDESVDVAVF---CLSLMGT---------------------NWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ---------------TT-EEEEEE---ES---SS----------------------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -------------CCCCceeEEEE---EhhhhCC---------------------CcHHHHHHHHheeccCcEEEEEEec
Confidence 45788999985 3 22232 13468999999999999888764 4
Q ss_pred CCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 277 SLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
| .-+|.......++.. +|++.... ....=|++..|+|..
T Consensus 161 S--Rf~~~~~F~~~~~~~-GF~~~~~d----------~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 161 S--RFENVKQFIKALKKL-GFKLKSKD----------ESNKHFVLFEFKKIR 199 (219)
T ss_dssp G--G-S-HHHHHHHHHCT-TEEEEEEE------------STTEEEEEEEE-S
T ss_pred c--cCcCHHHHHHHHHHC-CCeEEecc----------cCCCeEEEEEEEEcC
Confidence 4 333555555556655 77665421 233456777777653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00081 Score=63.58 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHcCC---ceEEEecCccccchhhhhhhhc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRLNL---KATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~g~---~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.++..++|+|||.|.|+..+++.+. ...+++|+|...++.+.+++..... .+.-+++|.....
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l--------- 145 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL--------- 145 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH---------
Confidence 4677999999999999998877553 4789999999999999999983333 3566888886642
Q ss_pred ccccccccccC----CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh-cCCCCCEEEEEc
Q psy15212 203 KKTNNRFRFYK----NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK-MLKPGGKLLFVT 275 (329)
Q Consensus 203 ~~~~~~~~~~~----~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~-~LkpgG~lvysT 275 (329)
.+.. ......|+. |=|+.|.+ .+. ....+|+...+ .|+|||.|+.+.
T Consensus 146 -------~~l~~~~~~~~~r~~~f--lGSsiGNf----------~~~-------ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 146 -------AWLKRPENRSRPTTILW--LGSSIGNF----------SRP-------EAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred -------hhcccccccCCccEEEE--eCccccCC----------CHH-------HHHHHHHHHHHhhCCCCCEEEEec
Confidence 1111 123445542 33333432 121 23467888888 999999999875
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=59.75 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=70.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC--Cc---eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN--LK---ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g--~~---v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+.| .+||=+|.|-|+..-.+++.- .+|+-||+++..++.+++-+.... .+ ++++. ...+
T Consensus 71 ~~p-k~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~------------- 134 (262)
T PRK00536 71 KEL-KEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD------------- 134 (262)
T ss_pred CCC-CeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh-------------
Confidence 444 699999999999999999874 499999999999999999554432 22 44443 1110
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
...++||+||+|-..+ .++.+.+.+.|+|||.+|.-+-|..
T Consensus 135 -------~~~~~fDVIIvDs~~~---------------------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 135 -------LDIKKYDLIICLQEPD---------------------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred -------ccCCcCCEEEEcCCCC---------------------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 1236899999994211 2345677888999999998654443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00029 Score=62.47 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..+.||+|||-|..|-+++...-.+|-.+|..++-++.+++.+...+-. .++++.-..++.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------------------ 117 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------------------ 117 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc------------------
Confidence 4689999999999998875322259999999999999999876653333 467777666654
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCccc---CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWL---RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~---~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+||+|.+ .|- .+.+++ .++|+++.+.|+|||.+|.=
T Consensus 118 P~~~~YDlIW~----------------QW~lghLTD~dl-------v~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 118 PEEGKYDLIWI----------------QWCLGHLTDEDL-------VAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp --TT-EEEEEE----------------ES-GGGS-HHHH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCcEeEEEe----------------hHhhccCCHHHH-------HHHHHHHHHhCcCCcEEEEE
Confidence 12468999975 232 233332 46899999999999988863
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00036 Score=62.48 Aligned_cols=77 Identities=25% Similarity=0.249 Sum_probs=51.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce-EEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA-TLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
-+|..+||+||.+||+|-.+.+....+|+|+|+....+..- + |....+ .+-..|++.+.. .
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---L-R~d~rV~~~E~tN~r~l~~------------~-- 139 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---L-RNDPRVIVLERTNVRYLTP------------E-- 139 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---H-hcCCcEEEEecCChhhCCH------------H--
Confidence 35889999999999999999987557999999977555421 1 112222 333445555431 1
Q ss_pred cccCCCCCCEEEEccCCc
Q psy15212 210 RFYKNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCs 227 (329)
.-.+..|.|++|...-
T Consensus 140 --~~~~~~d~~v~DvSFI 155 (245)
T COG1189 140 --DFTEKPDLIVIDVSFI 155 (245)
T ss_pred --HcccCCCeEEEEeehh
Confidence 1124789999998754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=57.16 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=48.9
Q ss_pred eEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISK 191 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~ 191 (329)
.|||+||+.|..+..+++..+ .+|+++|.++..++.+++|++.+++. ++++......
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998766 59999999999999999999998875 6666655443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00034 Score=61.59 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=59.5
Q ss_pred CCeEEeecCCCchHHHHH----HHhCC------CEEEEEeCChhHHHHHHHH--------------HHHcC---------
Q psy15212 133 GMYVLDACSAPGGKTCHL----LEIAD------IKLISVDNNLSRLNMISEN--------------LKRLN--------- 179 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~l----a~~~~------~~v~avD~~~~rl~~l~~n--------------~~~~g--------- 179 (329)
.-+|+.+||++|-=.-.+ .+..+ .+|+|.|+|+..++.+++- .+++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 358999999999744333 33111 3999999999999988762 11110
Q ss_pred C------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHH
Q psy15212 180 L------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKY 253 (329)
Q Consensus 180 ~------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~ 253 (329)
+ .|++...|..+. ....+.||+|+| |+--+ .--.+.
T Consensus 112 v~~~lr~~V~F~~~NL~~~------------------~~~~~~fD~I~C-----------RNVlI---------YF~~~~ 153 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP------------------DPPFGRFDLIFC-----------RNVLI---------YFDPET 153 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------------------------EEEEEE------------SSGG---------GS-HHH
T ss_pred EChHHcCceEEEecccCCC------------------CcccCCccEEEe-----------cCEEE---------EeCHHH
Confidence 0 023333333321 113468999996 11111 111345
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 254 SCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 254 q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
|.++++...+.|+|||+|+.+..-
T Consensus 154 ~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 154 QQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred HHHHHHHHHHHcCCCCEEEEecCc
Confidence 788999999999999999987543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00054 Score=63.79 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=31.8
Q ss_pred CeEEeecCCCchHHHHHH----HhCC-----CEEEEEeCChhHHHHHHHH
Q psy15212 134 MYVLDACSAPGGKTCHLL----EIAD-----IKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la----~~~~-----~~v~avD~~~~rl~~l~~n 174 (329)
-+|+.+||++|-=.-.+| +..+ .+|+|.|+|...++.+++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 589999999997444333 3222 4899999999999998875
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0039 Score=53.45 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=91.9
Q ss_pred cCCCchHHHHHHHhCC--CEE--EEEeCChhHHH---HHHHHHHHc---CCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 140 CSAPGGKTCHLLEIAD--IKL--ISVDNNLSRLN---MISENLKRL---NLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 140 cag~G~kt~~la~~~~--~~v--~avD~~~~rl~---~l~~n~~~~---g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
|=|.-+++..+++..+ ..| ++.|......+ .+..|++.+ |+. .+...|++++.
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~-V~~~VDat~l~---------------- 66 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVT-VLHGVDATKLH---------------- 66 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCc-cccCCCCCccc----------------
Confidence 3444556666776655 344 45555444333 233565554 433 24567888876
Q ss_pred ccc--CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 210 RFY--KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 210 ~~~--~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
... ....||+|+-+-|+.|.|. ......+.....+-..+++.|.++|+++|.+..+-|.-.|- +...|
T Consensus 67 ~~~~~~~~~FDrIiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i 136 (166)
T PF10354_consen 67 KHFRLKNQRFDRIIFNFPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNI 136 (166)
T ss_pred ccccccCCcCCEEEEeCCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccH
Confidence 222 4578999999999997433 11234566667778899999999999999999998887663 66777
Q ss_pred HHHHhhCCCcEEec---CCCcccCCC
Q psy15212 288 IIFSKNHKDSIRLN---SPGQLLPTV 310 (329)
Q Consensus 288 ~~~l~~~~~~~~~~---~~~~~~p~~ 310 (329)
....++. ++.+.. .....+|+.
T Consensus 137 ~~lA~~~-gl~l~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 137 EELAAEA-GLVLVRKVPFDPSDYPGY 161 (166)
T ss_pred HHHHHhc-CCEEEEEecCCHHHCCCc
Confidence 7666654 665543 334556664
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=60.24 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c--------------------------
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-------------------------- 181 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-------------------------- 181 (329)
..|.++||+||||--.. +..... .+|+..|..+.-.+.+++-++.-+. .
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35789999999994332 221222 5899999999988887776654332 0
Q ss_pred --e-EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 182 --A-TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 182 --v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
| +++.+|.++.+ +-++. ...+.+||.|+.=- .-+-+..-.....+.+
T Consensus 133 ~~Vk~Vv~cDV~~~~----------pl~~~--~~~p~~~D~v~s~f------------------cLE~a~~d~~~y~~al 182 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPN----------PLDPP--VVLPPKFDCVISSF------------------CLESACKDLDEYRRAL 182 (256)
T ss_dssp HHEEEEEE--TTSSS----------TTTTS---SS-SSEEEEEEES------------------SHHHH-SSHHHHHHHH
T ss_pred HhhceEEEeeccCCC----------CCCcc--ccCccchhhhhhhH------------------HHHHHcCCHHHHHHHH
Confidence 1 13333333321 00000 00123588887411 1111222223466789
Q ss_pred HHHHhcCCCCCEEEEEcC---C---CC------ccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 259 NNLWKMLKPGGKLLFVTC---S---LW------FEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTC---S---~~------~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
++..++|||||+|+.... | +. -.=|++.|...++.. ++.+.... + -.. ..+.+|.|++.=+|
T Consensus 183 ~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a-G~~i~~~~-~-~~~---~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 183 RNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA-GFDIEDLE-K-QSK---VSDYEGMFFLVARK 256 (256)
T ss_dssp HHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT-TEEEEEEE-G--TT---TB---EEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc-CCEEEecc-c-ccC---cCCCCcEEEEEEeC
Confidence 999999999999998742 1 11 114889999999886 66655443 1 111 15778998887765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1098|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00046 Score=68.99 Aligned_cols=123 Identities=20% Similarity=0.261 Sum_probs=73.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccc----cchhhhhhhhc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISK----INLKKLYIDIN 202 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~----~~~~~~~~~~~ 202 (329)
++++..|||+||+||++.-.+++.++ +.|+|+|+-+-.. ++ +..++.|++. ..+.
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp-----------~~~c~t~v~dIttd~cr~~l~------- 103 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP-----------IPNCDTLVEDITTDECRSKLR------- 103 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc-----------CCccchhhhhhhHHHHHHHHH-------
Confidence 46788999999999999999999888 7999999865331 11 2233333332 1111
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
......+.|+||.|..-+-.|. | . .+...-..+-..-|+-|..+|..||.+|-- +++.+
T Consensus 104 -------k~l~t~~advVLhDgapnVg~~--------w--~-~DA~~q~~L~l~al~LA~~~l~~~g~fvtk---vfrs~ 162 (780)
T KOG1098|consen 104 -------KILKTWKADVVLHDGAPNVGGN--------W--V-QDAFQQACLTLRALKLATEFLAKGGTFVTK---VFRSE 162 (780)
T ss_pred -------HHHHhCCCcEEeecCCCccchh--------H--H-HHHHHhhHHHHHHHHHHHHHHHhcCccccc---cccCC
Confidence 1122345699999865332222 2 2 223333334455678889999999997633 34444
Q ss_pred cHHHHHHHH
Q psy15212 283 SEEQAIIFS 291 (329)
Q Consensus 283 ne~vv~~~l 291 (329)
.-.-+-+.+
T Consensus 163 dy~~ll~v~ 171 (780)
T KOG1098|consen 163 DYNGLLRVF 171 (780)
T ss_pred cchHHHHHH
Confidence 444344433
|
|
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=60.90 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=72.0
Q ss_pred hhcCCCCCCeEEeecCCCch-HHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc-hhhhhhhhc
Q psy15212 126 PLLDIRSGMYVLDACSAPGG-KTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN-LKKLYIDIN 202 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~-kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~-~~~~~~~~~ 202 (329)
..-++++|.+||=+||||=| .|...|+.++ .+|+.+|+++.|++.+++ +|..+........... +.++. .
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v---~ 235 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELV---E 235 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHH---H
Confidence 34468999999999999955 4555567777 799999999999998876 6776322222211111 00000 0
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+....||+.+ -|||... -++.|...++.||+++..-|
T Consensus 236 -------~~~g~~~~d~~~---dCsG~~~-------------------------~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 236 -------KALGKKQPDVTF---DCSGAEV-------------------------TIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred -------hhccccCCCeEE---EccCchH-------------------------HHHHHHHHhccCCEEEEecc
Confidence 112235689887 4776533 46677888999999888755
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=59.43 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=57.3
Q ss_pred HHHHhhhcCCCCCC--eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC----C------ceEEEecC
Q psy15212 121 AQLAAPLLDIRSGM--YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN----L------KATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g~--~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g----~------~v~~~~~D 188 (329)
....+.+.++++|. +|||+-||-|.=++.+|.. |++|+++|.|+-....++.-++++. . .++++++|
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 35566677777764 8999999999999999975 6799999999998888887766541 2 27899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPC 226 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PC 226 (329)
+..+- . .....||+|.+||=.
T Consensus 141 ~~~~L----------------~-~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 141 ALEYL----------------R-QPDNSFDVVYFDPMF 161 (234)
T ss_dssp CCCHC----------------C-CHSS--SEEEE--S-
T ss_pred HHHHH----------------h-hcCCCCCEEEECCCC
Confidence 88763 1 235789999999953
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0031 Score=58.09 Aligned_cols=123 Identities=22% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCeEEeecCCCch----HHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHH-----cCCc----eE-EEecCcccc
Q psy15212 133 GMYVLDACSAPGG----KTCHLLEIAD------IKLISVDNNLSRLNMISENLKR-----LNLK----AT-LILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~----kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~-----~g~~----v~-~~~~D~~~~ 192 (329)
.-+|+-++|++|- .+..+.+..+ .+|+|.|+|...++.++.-.=. -+++ -+ +.......+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3489999999996 3444444442 5999999999999988763211 2332 01 212211111
Q ss_pred ch-hhhhhhhcccccccc-cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 193 NL-KKLYIDINKKTNNRF-RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 193 ~~-~~~~~~~~~~~~~~~-~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
.+ +.+.--..=..-+.+ +.+..+.||+|+| |+--+- --...|.++++.-+..|+|||.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC-----------RNVLIY---------Fd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC-----------RNVLIY---------FDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEE-----------cceEEe---------eCHHHHHHHHHHHHHHhCCCCE
Confidence 10 000000000000000 0112467999997 111111 1134689999999999999999
Q ss_pred EEEEc
Q psy15212 271 LLFVT 275 (329)
Q Consensus 271 lvysT 275 (329)
|+...
T Consensus 237 LflG~ 241 (268)
T COG1352 237 LFLGH 241 (268)
T ss_pred EEEcc
Confidence 99753
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=61.65 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=77.4
Q ss_pred CCeEEeecCCCchHHHHHH-HhCCCEEEEEeCChhHHHHHHHHHHHc-CCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLL-EIADIKLISVDNNLSRLNMISENLKRL-NLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la-~~~~~~v~avD~~~~rl~~l~~n~~~~-g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.-++||+|+|.-.+--.|+ ...+-+.+|.|+++..++.+++|++++ ++. |+++...-....+..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i----------- 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI----------- 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS-----------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh-----------
Confidence 4579999999987754444 334469999999999999999999999 886 7776543221110000
Q ss_pred ccccCCCCCCEEEEccCCccccc-c-----cc------------CCCCcccCCh-hHHHH--HHHHHHHHHHHHHhcCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGV-V-----RR------------NPDIPWLRRK-NDIKK--LSKYSCKILNNLWKMLKP 267 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~-~-----~~------------~p~~~~~~~~-~~~~~--l~~~q~~lL~~a~~~Lkp 267 (329)
....+.||..+|+||...+.- . ++ .|..-..-+. +-... =...-.+|+++...+-
T Consensus 172 --~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~-- 247 (299)
T PF05971_consen 172 --IQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLK-- 247 (299)
T ss_dssp --TT--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHG--
T ss_pred --hcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhC--
Confidence 012468999999999754421 1 11 1111111011 11111 1234466777776652
Q ss_pred CCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 268 GGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 268 gG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
....+|+ |=+...+|-..+...|++..
T Consensus 248 ~~v~WfT-smvgKkssL~~l~~~L~~~~ 274 (299)
T PF05971_consen 248 DQVRWFT-SMVGKKSSLKPLKKELKKLG 274 (299)
T ss_dssp GGEEEEE-EEESSGGGHHHHHHHHHHTT
T ss_pred CCcEEEe-ecccCcccHHHHHHHHHhcC
Confidence 2455654 55788899999999998763
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00054 Score=64.30 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=58.0
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKN 214 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (329)
+++|+|||.||.+.-+-+..-..+.|+|+++...+..+.|.. .+..+|..+..... ++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~---------------l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSD---------------LPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHH---------------HHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------cccccccccccccc---------------ccc
Confidence 689999999999998876432589999999999999999987 67788888865211 122
Q ss_pred CCCCEEEEccCCcccccccc
Q psy15212 215 KYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.+|+++.-|||.+....++
T Consensus 61 -~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 61 -DVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp -T-SEEEEE---TTTSTTST
T ss_pred -cceEEEeccCCceEecccc
Confidence 5999999999998877764
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.004 Score=54.99 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=73.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|.+||.+|-|-|...+.+-+.-+.+-+-++-++.-+++++.+--+-.-+|.++.+-=.+.. +
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl----------------~ 163 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL----------------N 163 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh----------------c
Confidence 578899999999999998887765567778899999999888875544333444443222211 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+.++.||.|+-|.= ..+.+--+.+-.++.++|||+|.+-|.
T Consensus 164 ~L~d~~FDGI~yDTy----------------------~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 164 TLPDKHFDGIYYDTY----------------------SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccccCcceeEeech----------------------hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 135677999998741 112222344556999999999988774
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00045 Score=63.66 Aligned_cols=95 Identities=18% Similarity=0.167 Sum_probs=69.0
Q ss_pred cccceEEEechhHHHHhh--------hcC-CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 109 FFNGFCSIQDAAAQLAAP--------LLD-IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~--------~l~-~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
..+|-.+.=|+.-.+... ++. --.|+.|.||.||-|.+|+...-..+ ..|+|+|.++..++.++++++.+
T Consensus 162 v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N 241 (351)
T KOG1227|consen 162 VQNGITQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEAN 241 (351)
T ss_pred hhcCeEEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhc
Confidence 345777766766443321 111 12368999999999999994443445 69999999999999999999999
Q ss_pred CCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEE
Q psy15212 179 NLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILA 222 (329)
Q Consensus 179 g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~ 222 (329)
++. ..++.+|-+... .....|.|.+
T Consensus 242 ~V~~r~~i~~gd~R~~~-------------------~~~~AdrVnL 268 (351)
T KOG1227|consen 242 NVMDRCRITEGDNRNPK-------------------PRLRADRVNL 268 (351)
T ss_pred chHHHHHhhhccccccC-------------------ccccchheee
Confidence 875 567778877654 3467888865
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.027 Score=50.01 Aligned_cols=123 Identities=16% Similarity=0.064 Sum_probs=95.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
++.+.++.|+||==|.....+.+... ..+++.|+++.-++.+.+|++++++. +++..+|....-
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l------------- 80 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL------------- 80 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-------------
Confidence 34567799999999999999998655 69999999999999999999999986 788888885432
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
-.+..+|.|+. .|+|- .+-.+||++..+.|+.--++|. -|.-++..
T Consensus 81 -----~~~d~~d~ivI----AGMGG--------------------~lI~~ILee~~~~l~~~~rlIL-----QPn~~~~~ 126 (226)
T COG2384 81 -----ELEDEIDVIVI----AGMGG--------------------TLIREILEEGKEKLKGVERLIL-----QPNIHTYE 126 (226)
T ss_pred -----CccCCcCEEEE----eCCcH--------------------HHHHHHHHHhhhhhcCcceEEE-----CCCCCHHH
Confidence 13447888774 34443 1356789999888875557774 68888899
Q ss_pred HHHHHhhCCCcEEe
Q psy15212 287 AIIFSKNHKDSIRL 300 (329)
Q Consensus 287 v~~~l~~~~~~~~~ 300 (329)
+..+|..+ ++.+.
T Consensus 127 LR~~L~~~-~~~I~ 139 (226)
T COG2384 127 LREWLSAN-SYEIK 139 (226)
T ss_pred HHHHHHhC-Cceee
Confidence 99999887 55443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0067 Score=57.57 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCcccccceEEE--echhH---HHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHH-
Q psy15212 105 KIPKFFNGFCSI--QDAAA---QLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLK- 176 (329)
Q Consensus 105 ~~~~~~~G~~~~--Qd~~s---~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~- 176 (329)
+...|.+|-+.. .|+-. .++-..+. ++.-++||-+|-|-|--.-.+.+.-+ .+|+-+|+++++++.++++..
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 455666665433 33332 22222222 34456899999999977777776433 799999999999999996533
Q ss_pred -HcC---C---ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH
Q psy15212 177 -RLN---L---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249 (329)
Q Consensus 177 -~~g---~---~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~ 249 (329)
..+ . .++++..|+.++- .. ....||.||+|-|--.+ |.+. ++.+
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wl----------------r~-a~~~fD~vIVDl~DP~t------ps~~------rlYS 386 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWL----------------RT-AADMFDVVIVDLPDPST------PSIG------RLYS 386 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHH----------------Hh-hcccccEEEEeCCCCCC------cchh------hhhh
Confidence 221 1 1788999988764 11 23589999999985422 2111 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCC-CCccccHHHHHHHHhhCCCcEEec
Q psy15212 250 LSKYSCKILNNLWKMLKPGGKLLFVTCS-LWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 250 l~~~q~~lL~~a~~~LkpgG~lvysTCS-~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.++-..+.+.|+++|.+|.-.-| +...+--.-|..-+++. ++...|
T Consensus 387 -----~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~A-G~~~~P 433 (508)
T COG4262 387 -----VEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSA-GYRVWP 433 (508)
T ss_pred -----HHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhC-cceeee
Confidence 23455566789999988865433 33434444455555553 344333
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0052 Score=58.35 Aligned_cols=95 Identities=18% Similarity=0.313 Sum_probs=65.3
Q ss_pred CCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+++||++|+=.|+| -|..++++|+.++++|+|+|++++.++.+++ +|....+...|.....
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~----lGAd~~i~~~~~~~~~-------------- 224 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK----LGADHVINSSDSDALE-------------- 224 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH----hCCcEEEEcCCchhhH--------------
Confidence 47899998888776 4567788888778999999999999876554 5554222211222211
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
. ..+.||.||.-.| . .-+..++++|++||+++..
T Consensus 225 --~--~~~~~d~ii~tv~-~----------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 225 --A--VKEIADAIIDTVG-P----------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred --H--hHhhCcEEEECCC-h----------------------------hhHHHHHHHHhcCCEEEEE
Confidence 0 1234999998666 3 2367788889999998864
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0029 Score=52.52 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=44.1
Q ss_pred CCCCeEEeecCCCchHHHHHHH-----hCCCEEEEEeCChhHHHHHHHHHHHcC
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLE-----IADIKLISVDNNLSRLNMISENLKRLN 179 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~-----~~~~~v~avD~~~~rl~~l~~n~~~~g 179 (329)
.+...|+|+|||-|..+..++. ..+.+|+++|.++..++.+..+.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 6678999999999999999998 434799999999999999999998887
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=55.35 Aligned_cols=103 Identities=23% Similarity=0.291 Sum_probs=77.7
Q ss_pred hhcCCCCC----CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 126 PLLDIRSG----MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 126 ~~l~~~~g----~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.++....| ...+|+|+|.|..+-++....+ +|-+++.+..-+-....++. .| |+.+.+|+..-.
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~-------- 234 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDT-------- 234 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-CC--cceecccccccC--------
Confidence 34444445 7899999999999999998666 79999999988888888776 55 666777776532
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcc---cCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPW---LRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~---~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+-|+|++ +| .|+.++. .++|+++++.|+|||.++..-+
T Consensus 235 -------------P~~daI~m----------------kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 -------------PKGDAIWM----------------KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -------------CCcCeEEE----------------EeecccCChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 23457764 33 3566664 4689999999999999998766
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.022 Score=45.18 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=68.2
Q ss_pred EEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccc--cchhhhhhhhccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISK--INLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~--~~~~~~~~~~~~~~~~~~~ 210 (329)
++|+|||+|..+ .++.... ..++++|.++.++...+......+.. +.+...|... .+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP----------------- 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-----------------
Confidence 999999999877 5554444 38999999999999855554432222 4666666554 22
Q ss_pred ccCC-CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 211 FYKN-KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 211 ~~~~-~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
+.. ..||.+....... +. . ....+..+.+.++|+|.+++++......
T Consensus 114 -~~~~~~~d~~~~~~~~~------------~~-~----------~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 114 -FEDSASFDLVISLLVLH------------LL-P----------PAKALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred -CCCCCceeEEeeeeehh------------cC-C----------HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence 122 3788884322111 00 0 3457888888999999999987765443
|
|
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.037 Score=50.36 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=60.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
...|-|+|||-+-.+. .....|.++|+.+ +.-+++.+|+++.+ +
T Consensus 181 ~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vP------------------l 224 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVP------------------L 224 (325)
T ss_pred ceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCc------------------C
Confidence 4578999999986554 2225899999732 22468889999977 4
Q ss_pred CCCCCCEEEEccCC-ccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 213 KNKYFDRILADLPC-TGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 213 ~~~~fD~Vl~D~PC-sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+++.|++++ | |=+|+ -...++++|.++|++||.+.++--
T Consensus 225 ~d~svDvaV~---CLSLMgt---------------------n~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 225 EDESVDVAVF---CLSLMGT---------------------NLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccCcccEEEe---eHhhhcc---------------------cHHHHHHHHHHHhccCceEEEEeh
Confidence 6789999885 4 22222 134689999999999999888753
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0068 Score=53.09 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC-------Cc-eEEEecCccccchhhhhhhhcc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN-------LK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g-------~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.-.+.|+|||-||....++.+.+ -.|+|.|+..+-.+..+++++.++ .+ +.+...++..+- +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l-p-------- 131 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL-P-------- 131 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc-c--------
Confidence 34789999999999999998888 789999998888888888877665 33 455555555432 1
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
.++..+..+..+.=-| +|.-+-.....+ -.+..++.+-.-+|++||.++++|-- .|-
T Consensus 132 ------n~f~kgqLskmff~fp---------dpHfk~~khk~r-----ii~~~l~~eyay~l~~gg~~ytitDv---~el 188 (249)
T KOG3115|consen 132 ------NFFEKGQLSKMFFLFP---------DPHFKARKHKWR-----IITSTLLSEYAYVLREGGILYTITDV---KEL 188 (249)
T ss_pred ------chhhhcccccceeecC---------ChhHhhhhccce-----eechhHHHHHHhhhhcCceEEEEeeH---HHH
Confidence 1122222222221111 111110111111 12345677777889999999988742 233
Q ss_pred HHHHHHHHhhCCCcEEec
Q psy15212 284 EEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 284 e~vv~~~l~~~~~~~~~~ 301 (329)
-+-....+++||-|+.+.
T Consensus 189 h~wm~~~~e~hplfe~lt 206 (249)
T KOG3115|consen 189 HEWMVKHLEEHPLFERLT 206 (249)
T ss_pred HHHHHHHHHhCcHhhhcc
Confidence 333444567787776554
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0014 Score=63.05 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKIN 193 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~ 193 (329)
.++|+.|-|+|||-|-.++.++... .+|+|+|.++++++.++.|+..+.+. ++++++|+..+-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4689999999999999999998754 69999999999999999999988885 789999987753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0041 Score=61.34 Aligned_cols=101 Identities=20% Similarity=0.375 Sum_probs=58.9
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEE---eCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISV---DNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~av---D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.+||+|||.|+++.+|.++ +..++++ |..+..++.+ -+-|+...+-..-...++
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfa----leRGvpa~~~~~~s~rLP------------------ 176 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFA----LERGVPAMIGVLGSQRLP------------------ 176 (506)
T ss_pred EEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhh----hhcCcchhhhhhcccccc------------------
Confidence 6999999999999999975 2233332 2222222222 223555222111112232
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.++.||.|= ||.-.+ .|.. .+ --+|-+.-++|+|||++|+|.--+.
T Consensus 177 fp~~~fDmvH----csrc~i-------~W~~--~~--------g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 177 FPSNAFDMVH----CSRCLI-------PWHP--ND--------GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred CCccchhhhh----cccccc-------cchh--cc--------cceeehhhhhhccCceEEecCCccc
Confidence 3678999996 443322 2321 11 1257778889999999999976665
|
; GO: 0008168 methyltransferase activity |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.009 Score=56.52 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=58.2
Q ss_pred EEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCC
Q psy15212 136 VLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNK 215 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (329)
|+|++||.||.+.-+-+..--.+.|+|+++..++..+.|... .++.+|..++... .-.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~-----------------~~~ 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPS-----------------DIP 58 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhh-----------------hCC
Confidence 689999999999888753224677899999999999988642 3445777765410 113
Q ss_pred CCCEEEEccCCccccccccCC
Q psy15212 216 YFDRILADLPCTGSGVVRRNP 236 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p 236 (329)
.+|+++.-|||.+....++..
T Consensus 59 ~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 59 DFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CcCEEEecCCCcccchhcccC
Confidence 589999999998887765543
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=53.12 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=61.9
Q ss_pred CeEEeecCCCchHHHHHHH-h-C-CCEEEEEeCChhHHHHHHHHHH-HcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLE-I-A-DIKLISVDNNLSRLNMISENLK-RLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~-~-~-~~~v~avD~~~~rl~~l~~n~~-~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+|+=+|+||=-.|..+.. . + +..|.++|+++.+.+.+++.++ ..|+. +.++.+|.....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-------------- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-------------- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG---------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc--------------
Confidence 4999999999877766554 2 2 2689999999999999999888 45553 789999987654
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..-..||.|++-+==. . +.+ .-.++|++..+.++||..++|=
T Consensus 188 ----~dl~~~DvV~lAalVg------~--------~~e-------~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 188 ----YDLKEYDVVFLAALVG------M--------DAE-------PKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----GG----SEEEE-TT-S-------------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ----cccccCCEEEEhhhcc------c--------ccc-------hHHHHHHHHHhhCCCCcEEEEe
Confidence 1125799999743211 0 000 1246899999999999999875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0095 Score=55.47 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=51.8
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
.+++++|+.+.. ..+.+++||+|++|||+.. |.-..+..-.|. .........+++..+
T Consensus 9 ~~i~~gD~~~~l----------------~~l~~~siDlIitDPPY~~-~~~~~~~~~~~~-----~~~~~~~l~~~l~~~ 66 (284)
T PRK11524 9 KTIIHGDALTEL----------------KKIPSESVDLIFADPPYNI-GKNFDGLIEAWK-----EDLFIDWLYEWIDEC 66 (284)
T ss_pred CEEEeccHHHHH----------------HhcccCcccEEEECCCccc-cccccccccccc-----HHHHHHHHHHHHHHH
Confidence 468888988753 1235678999999999953 110001111121 223334456889999
Q ss_pred HhcCCCCCEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 262 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
.++|||||.++.. |+.. ....+..+++.
T Consensus 67 ~rvLK~~G~i~i~-~~~~---~~~~~~~~~~~ 94 (284)
T PRK11524 67 HRVLKKQGTMYIM-NSTE---NMPFIDLYCRK 94 (284)
T ss_pred HHHhCCCcEEEEE-cCch---hhhHHHHHHhc
Confidence 9999999998875 4432 22334555543
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0073 Score=57.45 Aligned_cols=83 Identities=17% Similarity=0.295 Sum_probs=61.8
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
-+++|+|||-||..+-+.+..---+.++|+++..++..+.|... ..+...|........ ..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~---------------~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEA---------------LR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhh---------------cc
Confidence 47999999999999777653225889999999999999998764 345556666544100 11
Q ss_pred CCCCCEEEEccCCccccccccC
Q psy15212 214 NKYFDRILADLPCTGSGVVRRN 235 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~ 235 (329)
...+|+|+--|||-+..+..+.
T Consensus 65 ~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 65 KSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred ccCCCEEEeCCCCcchhhcCcc
Confidence 1179999999999988887665
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0082 Score=55.91 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
.+|+.|||.++|+|..++++. .++-+.+|+|++++-++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999997665544 5667999999999999999999864
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.021 Score=52.97 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=37.6
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
.+|||+|||||.-+..+.+..+ .+++++|.|+.+++..+..++..
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4899999999987777666655 59999999999999888877654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.048 Score=52.28 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=64.6
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc-ccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDIS-KINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~-~~~~~~~~~~~~~~~~ 206 (329)
..++.+|+=+|||| |-.+.++++..+ .+|+++|.++.|++.+++.. +..+ +..... .... ...
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~--~~~~~~~~~~~-~~~-------- 231 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADV--VVNPSEDDAGA-EIL-------- 231 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeE--eecCccccHHH-HHH--------
Confidence 44555999999999 445577777777 79999999999999887643 2221 111111 1000 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.......||.|+- |||. ...+..+.+++++||++++.--
T Consensus 232 ---~~t~g~g~D~vie---~~G~-------------------------~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 232 ---ELTGGRGADVVIE---AVGS-------------------------PPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ---HHhCCCCCCEEEE---CCCC-------------------------HHHHHHHHHHhcCCCEEEEEec
Confidence 0112347999983 6652 1257888999999999988643
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0079 Score=57.88 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=79.1
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
...++..++|++||-|+.+..++...+..++++|.++..+.+........+++ ..++..|..+.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~------------- 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP------------- 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------------
Confidence 46788899999999999999999876689999999999999988888888775 445777887765
Q ss_pred ccccccCCCCCCEEEE-ccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 207 NRFRFYKNKYFDRILA-DLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~-D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+++..||.+-+ |.=|- ...-...+++.++.++|||..+
T Consensus 174 -----fedn~fd~v~~ld~~~~-----------------------~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 174 -----FEDNTFDGVRFLEVVCH-----------------------APDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred -----CCccccCcEEEEeeccc-----------------------CCcHHHHHHHHhcccCCCceEE
Confidence 45678998753 22222 1112346788888899999776
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.046 Score=56.96 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=77.5
Q ss_pred CeEEeecCCCchHHHHHHHhC-------C------CEEEEEeCChhHHHHHHHHH--------------HH-----cCC-
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA-------D------IKLISVDNNLSRLNMISENL--------------KR-----LNL- 180 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~-------~------~~v~avD~~~~rl~~l~~n~--------------~~-----~g~- 180 (329)
=+|+|+|=|+|...+.+.+.. + -+++++|..+-..+.+.+.+ +. .|+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 579999999999877766433 1 38899998663333222221 11 122
Q ss_pred ---------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEcc--CCccccccccCCCCcccCChhHHHH
Q psy15212 181 ---------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL--PCTGSGVVRRNPDIPWLRRKNDIKK 249 (329)
Q Consensus 181 ---------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~--PCsg~G~~~~~p~~~~~~~~~~~~~ 249 (329)
..++..+|+...- ..+ ...||.|++|+ | .++|++ |
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~----------------~~~-~~~~d~~~lD~FsP-------~~np~~-W--------- 184 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELL----------------PQL-DARADAWFLDGFAP-------AKNPDM-W--------- 184 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHH----------------Hhc-cccccEEEeCCCCC-------ccChhh-c---------
Confidence 2345667776532 111 24699999996 4 356775 3
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEec
Q psy15212 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 250 l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
..++++...+++++||+++-.|++ ..|..-|... +|++..
T Consensus 185 ----~~~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~~~-GF~v~~ 224 (662)
T PRK01747 185 ----SPNLFNALARLARPGATLATFTSA-------GFVRRGLQEA-GFTVRK 224 (662)
T ss_pred ----cHHHHHHHHHHhCCCCEEEEeehH-------HHHHHHHHHc-CCeeee
Confidence 246788899999999999844443 5677777765 665543
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.021 Score=52.38 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|..|+=+| ---.|..++.+.+ -+|..+|+++..++-.++-++.+|++ ++.+..|.+++- +
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~pl-p------------- 215 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPL-P------------- 215 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccC-h-------------
Confidence 356788887 3333333333444 69999999999999999999999998 999999999864 1
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
....++||+++.|||.+
T Consensus 216 --e~~~~kFDvfiTDPpeT 232 (354)
T COG1568 216 --EDLKRKFDVFITDPPET 232 (354)
T ss_pred --HHHHhhCCeeecCchhh
Confidence 11236899999999966
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.014 Score=51.58 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
-.+|+.|||.+||+|..+.++. .++-+.+++|+++.-++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 4679999999999997665555 466699999999999988764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2782|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0075 Score=53.36 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=67.9
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...|.|.+|...+||--|.||.|..+.+... .+++|.|.+|-.-+.++......-- ....+.+.+..+. ++--+
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~--~l~~~- 111 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIK--SLIAD- 111 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHH--HHHHH-
Confidence 45567899999999999999999999999877 7999999999988887777643211 1222333333321 11000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGV 231 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~ 231 (329)
....+..+|.||+|--||++-+
T Consensus 112 --------~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 112 --------TGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred --------hCCCcCCcceEEeecCcccccc
Confidence 0124578999999999998743
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.027 Score=50.71 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=40.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
-.+|+.|||.+||+|+.+.++. .++...+|+|+++.-.+.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4689999999999997666555 45668999999999999999988764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=51.90 Aligned_cols=48 Identities=8% Similarity=-0.021 Sum_probs=38.8
Q ss_pred CCCCCeEEeecCCCch-HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSAPGG-KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~-kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++++|+=+|||+=| .++..|..+|+.|+++|+++.+++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCe
Confidence 5679999999999865 4556677788899999999999887665 5765
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.065 Score=48.67 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=47.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.+.++|+|+|||-=-.++......+ ..++|.|++...++.+..-+..+|....+...|...-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD 166 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc
Confidence 3367999999999888876665443 6999999999999999999999999888888887654
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.073 Score=53.02 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=59.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh-hhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY-IDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~-~~~~~~~~~~~~~ 211 (329)
.-+++|++||.||.+.-+-....-.|.++|+++...+.-+.|.... -...++..|...+...... +..+.. -..+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~-~~~~~- 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD-PATHRFNEDIRDITLSHKEGVSDEEA-AEHIR- 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC-CccceeccChhhCccccccccchhhh-hhhhh-
Confidence 4589999999999999886542247799999999999988885211 1134555666655310000 000000 00000
Q ss_pred cCCCCCCEEEEccCCcccccccc
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
..-..+|+++.-|||.+..+.++
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS~AG~ 187 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFSLAGV 187 (467)
T ss_pred ccCCCCCEEEEcCCCCccchhcc
Confidence 00125899999999987766543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.034 Score=50.11 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=43.8
Q ss_pred EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH
Q psy15212 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW 262 (329)
Q Consensus 183 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~ 262 (329)
+++++|+.+.- ..++++++|+|+.|||+.- |.-.+... .+ ... ...+...+.+.++.
T Consensus 3 ~l~~gD~le~l----------------~~lpd~SVDLIiTDPPY~i-~~~~~~~~-~~--~~~---~~~ew~~~~l~E~~ 59 (227)
T PRK13699 3 RFILGNCIDVM----------------ARFPDNAVDFILTDPPYLV-GFRDRQGR-TI--AGD---KTDEWLQPACNEMY 59 (227)
T ss_pred eEEechHHHHH----------------HhCCccccceEEeCCCccc-ccccCCCc-cc--ccc---cHHHHHHHHHHHHH
Confidence 56778877642 2246789999999999952 21111100 00 001 12233457889999
Q ss_pred hcCCCCCEEEEEcCCCC
Q psy15212 263 KMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 263 ~~LkpgG~lvysTCS~~ 279 (329)
++|||||.++. .|+..
T Consensus 60 RVLKpgg~l~i-f~~~~ 75 (227)
T PRK13699 60 RVLKKDALMVS-FYGWN 75 (227)
T ss_pred HHcCCCCEEEE-Eeccc
Confidence 99999987753 45543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.07 Score=43.44 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=42.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
.|.+|+|+||+-|.-++..+-....+|+|++.+++..+..++|++-+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4789999999999999998865447999999999999999999987644
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.24 Score=46.96 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+|++||=.|||+ |..++++|+.++. +|+++|.++++++.++ ++|..
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~ 216 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGAD 216 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCc
Confidence 355789998877532 3334555666664 7999999999987664 45754
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.009 Score=52.54 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=59.1
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
.++||+|||.|-.|.+++-... +|+|-|.|..|..+++ +.+..+-. ..+-.+ .
T Consensus 114 ~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~----kk~ynVl~-~~ew~~---------------------t 166 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLK----KKNYNVLT-EIEWLQ---------------------T 166 (288)
T ss_pred eeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHh----hcCCceee-ehhhhh---------------------c
Confidence 5899999999999999985444 8999999888876544 44444211 011111 1
Q ss_pred CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC-CCEEEEE
Q psy15212 214 NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP-GGKLLFV 274 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp-gG~lvys 274 (329)
+-+||+|+| ..++.|+-+ ..++|+.....|+| .|+++.+
T Consensus 167 ~~k~dli~c------lNlLDRc~~----------------p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 167 DVKLDLILC------LNLLDRCFD----------------PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred CceeehHHH------HHHHHhhcC----------------hHHHHHHHHHHhccCCCcEEEE
Confidence 236888863 222222211 24578888888888 8887765
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.033 Score=49.86 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=73.3
Q ss_pred HHHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 122 QLAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 122 ~l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
.++-.+.+.+ ....++|+||+-|...-|+....-.+++-+|.|..+++.++.-- ..++.+..+++|-..++
T Consensus 61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ld------- 132 (325)
T KOG2940|consen 61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLD------- 132 (325)
T ss_pred HHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhccc-------
Confidence 3444444443 35689999999999999987643379999999999998765432 24555566777766655
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.+++||+||. +.+. .|. ..+. .-...+...|||+|.++-|
T Consensus 133 -----------f~ens~DLiis-----Slsl-------HW~------NdLP----g~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 133 -----------FKENSVDLIIS-----SLSL-------HWT------NDLP----GSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred -----------ccccchhhhhh-----hhhh-------hhh------ccCc----hHHHHHHHhcCCCccchhH
Confidence 46789999982 2222 232 1111 1233455678999988743
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.19 Score=47.55 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++|++||=.|+|+ |..+.++|+.++. .|++++.++.+++.++ .+|..
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK----SLGAM 207 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc
Confidence 3467889988886533 2233455666665 4899999999887653 45653
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.15 Score=49.31 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=39.6
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISEN 174 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n 174 (329)
...+.+|++||..|+|+ |..+.++|+..+. +|+++|.++++++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 44577899999998887 7788888888884 799999999998877764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.16 Score=47.10 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=86.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C---ceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L---KATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~---~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
-++||=+|-|-|+..-..+.+-. +.|.-+|++..-++..++-+..+- . ++.+..+|...+-
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl------------- 188 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL------------- 188 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH-------------
Confidence 46899999999999887776633 689999999998888777665542 2 2788889987764
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....+.||+|++|-. +| ........|+.+.....+.||+||+++. ..|+..+
T Consensus 189 ---~~~~~~~~dVii~dss---------dp---------vgpa~~lf~~~~~~~v~~aLk~dgv~~~------q~ec~wl 241 (337)
T KOG1562|consen 189 ---EDLKENPFDVIITDSS---------DP---------VGPACALFQKPYFGLVLDALKGDGVVCT------QGECMWL 241 (337)
T ss_pred ---HHhccCCceEEEEecC---------Cc---------cchHHHHHHHHHHHHHHHhhCCCcEEEE------ecceehH
Confidence 2234578999999842 11 1234455678888888888999998863 3466666
Q ss_pred HHHHHhh
Q psy15212 287 AIIFSKN 293 (329)
Q Consensus 287 v~~~l~~ 293 (329)
-..+++.
T Consensus 242 ~~~~i~e 248 (337)
T KOG1562|consen 242 HLDYIKE 248 (337)
T ss_pred HHHHHHH
Confidence 5555553
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.57 Score=44.27 Aligned_cols=50 Identities=6% Similarity=-0.090 Sum_probs=35.9
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+.+|++++.++++++.+ +++|..
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a----~~~Ga~ 211 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLA----LALGAA 211 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH----HHhCCc
Confidence 4678899999888643 2244556666677899999999987654 457765
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.18 Score=40.37 Aligned_cols=91 Identities=22% Similarity=0.392 Sum_probs=59.0
Q ss_pred CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEE
Q psy15212 142 APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRIL 221 (329)
Q Consensus 142 g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl 221 (329)
|-|..++++|+..+.+|+++|.++.+++.++ ++|.. .++..+-.++. ..+. ....+..+|.|+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~----~~Ga~-~~~~~~~~~~~-~~i~-----------~~~~~~~~d~vi 63 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK----ELGAD-HVIDYSDDDFV-EQIR-----------ELTGGRGVDVVI 63 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH----HTTES-EEEETTTSSHH-HHHH-----------HHTTTSSEEEEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH----hhccc-ccccccccccc-cccc-----------cccccccceEEE
Confidence 3578899999998899999999999987654 56643 22222222111 0000 111235799997
Q ss_pred EccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 222 ADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 222 ~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
- |+|.+ ..+..+++++++||+++.....
T Consensus 64 d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 64 D---CVGSG-------------------------DTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp E---SSSSH-------------------------HHHHHHHHHEEEEEEEEEESST
T ss_pred E---ecCcH-------------------------HHHHHHHHHhccCCEEEEEEcc
Confidence 3 44422 3588889999999999876544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.28 Score=45.16 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=32.9
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+...+|++||=.|+ |+.+ .++|+..+. .|+++|.++.+++.+++ +|..
T Consensus 116 ~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~ 167 (280)
T TIGR03366 116 AGDLKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT 167 (280)
T ss_pred ccCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc
Confidence 34568999998865 4444 445555664 59999999998876544 5654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.44 Score=40.62 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=70.7
Q ss_pred hhHHHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 119 AAAQLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 119 ~~s~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
-+..++-.+++ ..++.+|+=+||=+-...+.-....+..++-.|.+..- +.+|-+ .++.-|...+. .+
T Consensus 11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~~~-~F~fyD~~~p~--~~ 79 (162)
T PF10237_consen 11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFGGD-EFVFYDYNEPE--EL 79 (162)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcCCc-ceEECCCCChh--hh
Confidence 33444444444 34567898887765544433311122588888886543 233333 35555655432 00
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ..+ .++||+|++|||.-. + + .+......+-.++|+++.++.+
T Consensus 80 --------~---~~l-~~~~d~vv~DPPFl~---------------~-e------c~~k~a~ti~~L~k~~~kii~~--- 122 (162)
T PF10237_consen 80 --------P---EEL-KGKFDVVVIDPPFLS---------------E-E------CLTKTAETIRLLLKPGGKIILC--- 122 (162)
T ss_pred --------h---hhc-CCCceEEEECCCCCC---------------H-H------HHHHHHHHHHHHhCccceEEEe---
Confidence 0 112 468999999999631 1 1 1223334444456778999875
Q ss_pred CCccccHHHHHHHH
Q psy15212 278 LWFEESEEQAIIFS 291 (329)
Q Consensus 278 ~~~~Ene~vv~~~l 291 (329)
.++++++.+.+.+
T Consensus 123 -Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 -TGEEMEELIKKLL 135 (162)
T ss_pred -cHHHHHHHHHHHh
Confidence 4688999988888
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.22 Score=47.86 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=34.9
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+. +|+++|.++.+++.++ ++|..
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~----~~Ga~ 238 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR----ELGAT 238 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----HcCCc
Confidence 3578899988887543 3344555666665 7999999999988764 35654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.1 Score=50.76 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=46.3
Q ss_pred eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 135 YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
.|||+|+|+|-.+.+++..++-.|+|+++-..+.+.+++-..++|.+ +.++.-.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 59999999999988888766579999999999999999999999985 6555433
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.27 Score=46.88 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=35.2
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+. +|+++|.++.+++.++ ++|..
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 3567899999886533 3344556666665 6999999999988774 45653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.34 Score=46.11 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeC---ChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDN---NLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~---~~~rl~~l~~n~~~~g~~ 181 (329)
+++|++||=.|+|+ |..+.++|+..+.+|++++. ++++++.+ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 46789999887653 33455666666778999987 57776654 456764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.34 Score=45.22 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||..++| .|..+.++|+..+.+|++++.++.+.+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 46788999997654 2666777777777789999999988776643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.66 Score=41.79 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.| |+|+.+.++++.+- .+|+.++.+...++.+...+...+..+.++.+|..+..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEA 74 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 466788777 57788888887643 69999999998888888777766666778899988754
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.81 Score=43.43 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=37.6
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+.+|+++|.++++++.++ .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH----HhCCc
Confidence 3567899999998855 55556677777778999999999987664 34654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.34 Score=45.61 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=33.9
Q ss_pred hcCCCCCCeEEeecCCCchHHH---HHHHhCCCE-EEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTC---HLLEIADIK-LISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~---~la~~~~~~-v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+.+++|++||=.|+ |+.+. ++|+.++.+ |++++.++++.+.++ ++|..
T Consensus 158 ~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~----~~ga~ 210 (339)
T cd08239 158 RVGVSGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELAK----ALGAD 210 (339)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC
Confidence 345778999988864 55544 455556656 999999999877654 45653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.46 Score=44.50 Aligned_cols=50 Identities=12% Similarity=0.293 Sum_probs=37.1
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |-|..+.++|+..+.+|++++.++++.+.++ .+|..
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~----~lGa~ 185 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK----KLGFD 185 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcCCC
Confidence 45788999987774 4566667777777789999999988876663 46764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=1 Score=39.94 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++.+||=.| |+|+.+.++++.+. .+|++++.++..++.+.+.++..+.++.++.+|+.+..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPA 69 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 356777554 57888888886543 58999999988888777777666656888889988753
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.25 Score=45.20 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=52.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|..-.|+||.|||.|-++.++. -.|+|+|.-+-+ +++...|. ++-...|..++.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~ma-----~sL~dtg~-v~h~r~DGfk~~---------------- 265 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGPMA-----QSLMDTGQ-VTHLREDGFKFR---------------- 265 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc-eEEEEeccchhh-----hhhhcccc-eeeeeccCcccc----------------
Confidence 5689999999999999999998753 499999964422 23333332 667778888775
Q ss_pred cccCCCCCCEEEEccC
Q psy15212 210 RFYKNKYFDRILADLP 225 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~P 225 (329)
+ ...+.|..+||.-
T Consensus 266 P--~r~~idWmVCDmV 279 (358)
T COG2933 266 P--TRSNIDWMVCDMV 279 (358)
T ss_pred c--CCCCCceEEeehh
Confidence 1 2568999999863
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.14 Score=47.24 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.|..++|.|||.|--+.. .+ ..++++|++...+..++ +.|. ..+..+|+.+.+
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak----~~~~-~~~~~ad~l~~p----------------- 98 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAK----RSGG-DNVCRADALKLP----------------- 98 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccc----cCCC-ceeehhhhhcCC-----------------
Confidence 488999999999933211 12 57899998777665432 2222 257788988876
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC-EEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG-KLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG-~lvys 274 (329)
+.+..||.+|. ..+ +.|..+.. .-...+++..+.|+||| .+||+
T Consensus 99 -~~~~s~d~~ls------iav------ihhlsT~~-------RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 99 -FREESFDAALS------IAV------IHHLSTRE-------RRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred -CCCCccccchh------hhh------hhhhhhHH-------HHHHHHHHHHHHhcCCCceEEEE
Confidence 35678998872 111 11221211 22457888889999999 46775
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.4 Score=39.96 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=44.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++.++|-.| |+|+.+.++++.+ +..|++++.++..++.+.+.+...+..+.++..|.++..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 71 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYA 71 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHH
Confidence 466888887 4667777777643 358999999988887777677666555677888987643
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.5 Score=39.40 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.| |+|+.+..+++.+ +.+|+..+.++..++.+.+.++..|.++..+..|+.+..
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~ 72 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHD 72 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHH
Confidence 366888777 4678888887654 368999999998888888778776766778888987743
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.8 Score=38.37 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.++++.+ +.+|+.++.++...+.+...+...+..+.++..|..+..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 69 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYE 69 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHH
Confidence 457787774 788888887653 369999999988887777667666656778889987654
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.58 Score=41.01 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=32.8
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCCh
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNL 165 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~ 165 (329)
+..+++|++|+|+--|.|.+|..++...+ |.|++.=..+
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 44689999999999999999999998877 7888865443
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.11 Score=49.42 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=23.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHH
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLN 169 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~ 169 (329)
..|||+|+|||.-..++-...+ ..++-++.|+..-+
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk 152 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK 152 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH
Confidence 4699999999976655555444 35555666665433
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.91 Score=41.95 Aligned_cols=44 Identities=16% Similarity=0.038 Sum_probs=36.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~ 176 (329)
...+||-.|||-|..+..+|.+ |-.+.|+|.|-.|+-...-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHc
Confidence 4568999999999999999986 6699999999999866555444
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.98 Score=44.78 Aligned_cols=114 Identities=15% Similarity=0.250 Sum_probs=78.5
Q ss_pred CCCCC-eEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGM-YVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~-~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..+-+ ++|-+|||.=-.+.++-+-+--.|+.+|+|+-.++.....-.+-.-...+...|+....
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~--------------- 109 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV--------------- 109 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc---------------
Confidence 34556 89999999988887777532269999999999998766554322122788888988765
Q ss_pred ccccCCCCCCEEEEccCCccccccccC---CCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRN---PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~---p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
++++.||.||. -|++..- .+..|. ...-...+....+++++||+.+-.||
T Consensus 110 ---fedESFdiVId------kGtlDal~~de~a~~~---------~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 110 ---FEDESFDIVID------KGTLDALFEDEDALLN---------TAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ---CCCcceeEEEe------cCccccccCCchhhhh---------hHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 46788999883 3443321 111111 12234578889999999999988888
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.2 Score=42.26 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=46.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+..||=.|+ +|+.+.++++.+ +.+|+.++.++.+++.+.+.++..|..+.++..|..+..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDAD 69 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence 3556776655 567777777654 369999999999999988888888877778888987643
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.26 Score=44.27 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHh-CCCEEEEEeCChhHHHHHHHHHHHc-CCc--eEEEec-Cccccchhhhhhhhcccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKRL-NLK--ATLILS-DISKINLKKLYIDINKKT 205 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~-~~~~v~avD~~~~rl~~l~~n~~~~-g~~--v~~~~~-D~~~~~~~~~~~~~~~~~ 205 (329)
.++-++||+|.|.--+--.+-.+ .+-+.++.|+++..++.++.++..+ +++ ++++.. |...+- ..
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if-~g--------- 146 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIF-NG--------- 146 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccc-cc---------
Confidence 45668999987754332222211 1248899999999999999999887 665 554432 222110 00
Q ss_pred cccccccCCCCCCEEEEccCCccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
..-..+.||.++|+||.-.+
T Consensus 147 ----iig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 147 ----IIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ----cccccceeeeEecCCCcchh
Confidence 01125789999999997543
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.9 Score=38.58 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=44.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.| |+|+.+.++++.+- .+|+..+.++..+..+.+.+...+..+..+..|..+..
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 71 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQ 71 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHH
Confidence 55777777 45678888876543 69999999988888887777766655677788887653
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.51 Score=41.08 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
..|.+++-.|.-..+ ...|+..+ -...++...+.+++ |.+|.--+|+.|.-.++.+..++++..
T Consensus 76 ~adv~~I~VpTP~~~--~~~~Dls~-------------v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 76 DADVVFICVPTPSDE--DGSPDLSY-------------VESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp H-SEEEE----EBET--TTSBETHH-------------HHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ccceEEEecCCCccc--cCCccHHH-------------HHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhhhhc
Confidence 578888777643222 22333222 12345566666777 455555688899999989999998754
Q ss_pred ----CcEEecCCCcccCC
Q psy15212 296 ----DSIRLNSPGQLLPT 309 (329)
Q Consensus 296 ----~~~~~~~~~~~~p~ 309 (329)
++.+.-.|-++.|+
T Consensus 140 ~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 140 GKKEDFHLAYSPERLREG 157 (185)
T ss_dssp CTTTCEEEEE------TT
T ss_pred ccccCCeEEECCCccCCC
Confidence 34444444444444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.78 Score=43.73 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=38.5
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |-|..+.++|+..+.+|++++.++.+.+.+++ .+|..
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~---~lGa~ 206 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKN---KLGFD 206 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---hcCCC
Confidence 35788999988876 36667788888888889999999888766542 35654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=2.4 Score=40.18 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=46.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+..||=.| |+|+.+..+++.+ +.+|+.++.++..++.+.+.++..|.++.++.+|..+..
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~ 70 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAE 70 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHH
Confidence 355677666 4567777776644 369999999999999888888887877888889988754
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.93 Score=43.69 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=34.7
Q ss_pred cCCCCCCeEEeecCCCchHHHH---HHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCH---LLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~---la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+.. +|+..+. +|+++|.++.+++.+++ +|..
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~ 245 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT 245 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc
Confidence 45788999998875 555544 5555665 79999999999887743 5664
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.7 Score=38.77 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=46.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.| |+|+.+.++++.+. .+|++++.++...+.+...++..+..+.++.+|..+..
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 66 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEE 66 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 45677554 57888999887643 58999999999888887777776766888889988644
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.3 Score=39.70 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.++.+...++.+.+.++..+..+..+..|..+..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 71 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQ 71 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 36688888764 56777777654 369999999999988888887776655777888987653
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.1 Score=44.07 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=32.7
Q ss_pred CCCCeEEeecCCCchHHHH-HHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 131 RSGMYVLDACSAPGGKTCH-LLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~-la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
-+|++|+=+|+|+=|.... +++.+|++|+.+|+++.|+..++.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 4699999999998555444 445566799999999999876643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.99 Score=41.97 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=37.2
Q ss_pred hcCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||=.|+ +.|..+.++|+..+.+|++++.++++.+.+++ +|+.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~ 190 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD 190 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC
Confidence 345788999887763 45556677777777899999999988776644 5664
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.2 Score=42.53 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCeEEeecCCCch-HHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGG-KTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~-kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
|.+||++|+|--+ -++++|...+ ..|..-|-++..++.++....++... +.++..+.....
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq------------- 96 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ------------- 96 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH-------------
Confidence 6789999988544 4445554444 68899999999998888776655222 222221111110
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.......||.|++ +-|. -+.+....+.+....+|+|-|.-++
T Consensus 97 ---sq~eq~tFDiIla-ADCl---------------------FfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 97 ---SQQEQHTFDIILA-ADCL---------------------FFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ---HHHhhCcccEEEe-ccch---------------------hHHHHHHHHHHHHHHHhCcccceeE
Confidence 0013458999985 2232 3333445677788888999876443
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.1 Score=42.37 Aligned_cols=48 Identities=25% Similarity=0.262 Sum_probs=33.8
Q ss_pred hhcCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHHH
Q psy15212 126 PLLDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMISE 173 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~~ 173 (329)
....+++|++||-.++|. |..+.++|+.++.+ |++++.++.+.+.+++
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 345678899988876543 55566667777755 9999988888766644
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=2.4 Score=37.73 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.++|=.| |+|+.+.++++.+- .+|+.++.++...+.+...+...+..+..+..|..+..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPD 68 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 355677555 66788888887543 69999999887777776666554444667788887653
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=2.5 Score=37.36 Aligned_cols=131 Identities=9% Similarity=0.104 Sum_probs=71.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
++.+||=.|+ +|+.+.++++.+. .+++.+.. ++...+.+.+.+...+..+.++..|..+.. .+.-..+. ..
T Consensus 4 ~~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~--~~~~~~~~-~~- 78 (245)
T PRK12937 4 SNKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAA--AVTRLFDA-AE- 78 (245)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH--HHHHHHHH-HH-
Confidence 3556666665 5788888887543 46666554 345566666667666666888889987743 11000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
. ..+..|.|+..+.-.+.+.+. ..+.++.... ..-...+++.+.+.++.+|.+++.+++.
T Consensus 79 --~--~~~~id~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 142 (245)
T PRK12937 79 --T--AFGRIDVLVNNAGVMPLGTIA-------DFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSV 142 (245)
T ss_pred --H--HcCCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecc
Confidence 0 114689999866422111111 1122222211 1223345667777777889999987653
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.39 E-value=2.3 Score=41.31 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc---ccccccccccCCC
Q psy15212 142 APGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN---KKTNNRFRFYKNK 215 (329)
Q Consensus 142 g~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 215 (329)
|-|..++.+|.... .+|+|+|+++++++.+.+-- ..+..-+....- +.. +... -+++.. .-.
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~------~~i~e~~~~~~v-~~~-v~~g~lraTtd~~----~l~ 83 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE------SYIEEPDLDEVV-KEA-VESGKLRATTDPE----ELK 83 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc------ceeecCcHHHHH-HHH-HhcCCceEecChh----hcc
Confidence 56666666665433 69999999999998764321 122222211100 000 0000 011110 012
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
.-|+++.=.|---.+ .+.||..+. ..-.+...+.|++|-.+++- .|..|.-.|+++.++++..+
T Consensus 84 ~~dv~iI~VPTPl~~--~~~pDls~v-------------~~aa~sIa~~L~kG~LVIlE-ST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 84 ECDVFIICVPTPLKK--YREPDLSYV-------------ESAARSIAPVLKKGDLVILE-STTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred cCCEEEEEecCCcCC--CCCCChHHH-------------HHHHHHHHHhcCCCCEEEEe-cCCCCCcHHHHHHHHHhhcC
Confidence 567777666633333 266665432 23455667789988877665 66789999999999999754
Q ss_pred CcE------EecCCCcccCCC
Q psy15212 296 DSI------RLNSPGQLLPTV 310 (329)
Q Consensus 296 ~~~------~~~~~~~~~p~~ 310 (329)
+.+ +--.|-+.+|+.
T Consensus 148 gL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 148 GLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred CCcccceeeEeeCccccCCCc
Confidence 443 322355666653
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=3.4 Score=37.34 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.++|=.|++ |+.+.+++..+ +.+|+.++.++..++.+...++..+.++.++.+|..+..
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 72 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDED 72 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 45577777766 45666666543 368999999999988888888877767788889988754
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.4 Score=41.52 Aligned_cols=50 Identities=10% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCCCC--CeEEeecC--CCchHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSG--MYVLDACS--APGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g--~~VLDlca--g~G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++| ++||=.|+ |.|..+.++|+..+. +|++++.++++.+.+++. +|..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~ 203 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD 203 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc
Confidence 35555 88888775 456667778887786 899999998887766553 5654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=2 Score=38.41 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.+.+||=.| |+|+.+.++++.+. .+|++++.++++++.+...+...+.++.++..|+.+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 70 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDY 70 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence 466788776 66778888876643 5899999999998888887766655677888888764
|
|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.59 Score=36.76 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC-CCC-ccccHHHHHHHHhh
Q psy15212 216 YFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC-SLW-FEESEEQAIIFSKN 293 (329)
Q Consensus 216 ~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC-S~~-~~Ene~vv~~~l~~ 293 (329)
+||+|+-+||+............. . .-..+..-+++.+.++| +|.+.|.|- ++. ..+.-.....++-.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~--~------~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK--K------KKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc--c------ccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 599999999997554322111100 0 12334556888999988 999988764 455 45555556666544
Q ss_pred CCCcE-EecCCC--cccCCC
Q psy15212 294 HKDSI-RLNSPG--QLLPTV 310 (329)
Q Consensus 294 ~~~~~-~~~~~~--~~~p~~ 310 (329)
...+. +...+. .++.+.
T Consensus 72 ~~~i~~i~~f~~~~~vF~~a 91 (106)
T PF07669_consen 72 NTNIKKIIDFGERKKVFEDA 91 (106)
T ss_pred CCCeeEEEECCCcccCCCCC
Confidence 43443 333322 256654
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.8 Score=36.57 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.|+ +|+.+.+++..+- .+|+.++.++..++.+...+...+..+..+..|..+..
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDED 67 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHH
Confidence 3567776654 6678888776543 69999999998888888777766666788889987643
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=2.6 Score=38.60 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=45.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.|+ +|+.+.++++.+. .+|+.+|.+...++.+.+.++..+.++.++..|..+..
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~ 68 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHRE 68 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 567887766 4677888776543 68999999998888777777766666778888988754
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=3.8 Score=36.61 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+..+++.+ +.+|+.++.++..++.+...+++.+..+.++.+|..+..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEE 73 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 4668887774 666777777654 369999999998888888777777766778888987643
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.52 Score=41.98 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=78.3
Q ss_pred hhHHHHhhhcCC----CC----CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc
Q psy15212 119 AAAQLAAPLLDI----RS----GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDIS 190 (329)
Q Consensus 119 ~~s~l~~~~l~~----~~----g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~ 190 (329)
.+|.+.+.+|.. .. .-++||+||=+.......... -.|+++|+++.- -.+...|+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~--fdvt~IDLns~~--------------~~I~qqDFm 93 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW--FDVTRIDLNSQH--------------PGILQQDFM 93 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc--eeeEEeecCCCC--------------CCceeeccc
Confidence 356666666641 11 248999998755433322211 469999996521 346678887
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
+.+++. ...++||+|.+ | =+++=-|+.. .--++|+++.++|+|+|.
T Consensus 94 ~rplp~---------------~~~e~FdvIs~----S--LVLNfVP~p~-------------~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 94 ERPLPK---------------NESEKFDVISL----S--LVLNFVPDPK-------------QRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cCCCCC---------------CcccceeEEEE----E--EEEeeCCCHH-------------HHHHHHHHHHHHhCCCCc
Confidence 765321 23578999974 2 2333333321 123589999999999999
Q ss_pred -----EEEEc---CCCC-ccccHHHHHHHHhhCCCcEEec
Q psy15212 271 -----LLFVT---CSLW-FEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 271 -----lvysT---CS~~-~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
|+..+ |--+ .-=+++....+++.- +|..+.
T Consensus 140 ~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~L-Gf~~~~ 178 (219)
T PF11968_consen 140 SLFPSLFLVLPLPCVTNSRYMTEERLREIMESL-GFTRVK 178 (219)
T ss_pred cCcceEEEEeCchHhhcccccCHHHHHHHHHhC-CcEEEE
Confidence 77764 4322 223566667777665 565443
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.5 Score=41.55 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=32.3
Q ss_pred CCCCCCeEEeecCCCchH-HHHHHHh-CC-CEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSAPGGK-TCHLLEI-AD-IKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~k-t~~la~~-~~-~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||=.|||+=|. +.++++. ++ .+|+++|.++.+++.++.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 357899999998754332 2455554 44 589999999999888753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=3.1 Score=37.31 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH--cCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR--LNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~--~g~~v~~~~~D~~~~~ 193 (329)
|.+||-.|++ |+.+.++++.+ +.+|+.++.++..++.+.+.+.. .+..+.++..|..+..
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAA 71 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHH
Confidence 5678877764 67787777654 36999999999988888877766 3444778888987643
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.52 E-value=2.8 Score=37.52 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=. .|+|+.+.++++.+- ..|+.++.++...+.+.+.+...+..+.++.+|..+..
T Consensus 7 ~~~vlIt-Gasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (262)
T PRK13394 7 GKTAVVT-GAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNED 69 (262)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHH
Confidence 5677744 556788888776543 58999999998888888887776666778889988754
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=3.7 Score=36.80 Aligned_cols=130 Identities=8% Similarity=0.022 Sum_probs=72.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|.++|=.|+ +|+.+..+++.+. .+|+.++.+.+.++.+..++... +.++.++.+|..+... +.-..+. ..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~--~~~~~~~-~~ 83 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDED--RRAILDW-VE 83 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHH--HHHHHHH-HH
Confidence 3667777766 5567777776543 68999999998888888777665 4457788889876430 0000000 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCC--CCCEEEEEcCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLK--PGGKLLFVTCS 277 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lk--pgG~lvysTCS 277 (329)
. .-+.+|.|+..+-... ..|. +..+.++..... .-...+++.+.+.++ ++|.+++.++.
T Consensus 84 ---~--~~g~id~li~~ag~~~-----~~~~--~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~ 148 (257)
T PRK09242 84 ---D--HWDGLHILVNNAGGNI-----RKAA--IDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSV 148 (257)
T ss_pred ---H--HcCCCCEEEECCCCCC-----CCCh--hhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECcc
Confidence 0 1246899887553211 1111 122333333221 122345566655553 46788887664
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=3.6 Score=36.74 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+..+++.+. .+|+.++.++..++.+.+.++..+.++.++..|+.+..
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 69 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDA 69 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 567887775 5667777765443 69999999999888888888777766788889987643
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=4 Score=36.65 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=42.2
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||=.| |+|+.+.++++.+ +.+|++++.++...+.+.+.+...+..+.++..|..+..
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 63 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAE 63 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 566454 6677888877543 369999999988877777777666656778888987753
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.22 E-value=4 Score=36.87 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=46.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++.++|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.+...+..+.++..|..+..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE 72 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 4668888875 677888887654 369999999998888777777666656778888987754
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.5 Score=37.63 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=52.3
Q ss_pred CeEEeecCCCch--HHHHHH---HhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 134 MYVLDACSAPGG--KTCHLL---EIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 134 ~~VLDlcag~G~--kt~~la---~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..+++.|++-|. .|+.|| ...+|+++++-.++..+...++.+..+|+. ++++.+|.....+
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~------------ 110 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM------------ 110 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH------------
Confidence 468888766443 344443 335589999999999999999999988886 6888888543111
Q ss_pred ccccccCCCCCCEEEEcc
Q psy15212 207 NRFRFYKNKYFDRILADL 224 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~ 224 (329)
. .-...|.+++|.
T Consensus 111 ---~--~~~~iDF~vVDc 123 (218)
T PF07279_consen 111 ---P--GLKGIDFVVVDC 123 (218)
T ss_pred ---h--hccCCCEEEEeC
Confidence 1 125799999985
|
The function of this family is unknown. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.8 Score=40.74 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=37.8
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |-|..+.++|+..+.+|++.+.++++.+.+++. +|..
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~ 199 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFD 199 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCc
Confidence 45789999998775 455566777777778999999888887766543 4654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=90.16 E-value=3 Score=38.41 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=62.9
Q ss_pred CeEEeecCCCc--hHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 134 MYVLDACSAPG--GKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 134 ~~VLDlcag~G--~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
...||+|||-= +.+=++|+... ++|+-+|+++--+...+..+....-. ..++.+|++++. .+. ........
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~--~iL--~~p~~~~~ 145 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE--AIL--AHPEVRGL 145 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH--HHH--CSHHHHCC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH--HHh--cCHHHHhc
Confidence 57999999943 34555666543 89999999999999999998876432 689999999865 110 00000000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
++ .++..=+++ .|++..-|+ .++ ...++......|.||.+|++|-.+
T Consensus 146 lD--~~rPVavll-------~~vLh~v~D------~~d-------p~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LD--FDRPVAVLL-------VAVLHFVPD------DDD-------PAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp ----TTS--EEEE-------CT-GGGS-C------GCT-------HHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CC--CCCCeeeee-------eeeeccCCC------ccC-------HHHHHHHHHHhCCCCceEEEEecC
Confidence 11 112222333 234433333 122 345788889999999999999655
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=90.15 E-value=2.2 Score=37.99 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=42.3
Q ss_pred EEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+|=.| |+|+.+.++++.+ +.+|+.++.+..+++.+.+.+...+..+.++.+|..+..
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 62 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKD 62 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 44444 5678888877654 369999999988888777777777766888889987643
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.9 Score=37.86 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=67.8
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|..+|=.|+++ +|.+..+++.+. .+|+.++.+....+.+++..+.. +..+..+..|+.+... +.--.+. ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~--v~~~~~~-~~ 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEE--ITACFET-IK 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHH--HHHHHHH-HH
Confidence 467899999884 888888887543 58888776533233333333333 3346677889877541 0000000 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. .-+++|.++.++-....+.+. .+ .+..+.++.... ......+.+.+...++++|++|..+
T Consensus 83 ---~--~~g~ld~lv~nag~~~~~~~~-~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 83 ---E--EVGVIHGVAHCIAFANKEDLR-GE--FLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred ---H--hCCCccEEEECcccCCCCcCC-Cc--cccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 0 125789888766322110000 01 111222222211 1122234566677777889887654
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.6 Score=38.93 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=34.7
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
..+|++||..|+|+ |..+.++++..+.+|++++.++.+.+.++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 37899999999886 66667777777789999999988877664
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=3.6 Score=36.21 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
+..||=.| |+|+.+.++++.+ +.+|++++.++...+.+.+.+... ..++++.+|+.+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~ 66 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDE 66 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCH
Confidence 56788777 4788888887654 368999999988887776666543 3377888888764
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=89.84 E-value=3.1 Score=37.66 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=33.9
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMISE 173 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~~ 173 (329)
...+++|++||=.++|+ |..+.++|+.++.+ |++++.++++.+.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 44678899988886544 44556677777766 9999999998765443
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.79 E-value=2.4 Score=44.42 Aligned_cols=132 Identities=13% Similarity=0.158 Sum_probs=71.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+|..||=.|+ +|+.+.++++.+ +.+|+++|.++..++.+...+... ..+.++..|..+... +.-..+. .
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~--v~~~~~~-~--- 492 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAA--VQAAFEE-A--- 492 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHH--HHHHHHH-H---
Confidence 5677886665 567777777653 369999999998887766655432 246778888876430 0000000 0
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC---CCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP---GGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---gG~lvysTC 276 (329)
....+.+|.|+..+-.+..+.+...+...|. ..+.....-...+++.+.+.++. ||.+|+.+.
T Consensus 493 --~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 493 --ALAFGGVDIVVSNAGIAISGPIEETSDEDWR---RSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred --HHHcCCCCEEEECCCCCCCCChhhCCHHHHH---HHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 0012468999877644333322211111111 01111122234466667766665 687777654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.5 Score=42.35 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=33.5
Q ss_pred cCCCCCCeEEeecCCCchHHHH---HHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCH---LLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~---la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+.. +|+..+. .|+++|.++.+.+.+ +.+|+.
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a----~~lGa~ 240 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA----KTFGVT 240 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----HHcCCc
Confidence 35778999998865 555544 4555564 699999999887765 346764
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=3.2 Score=38.37 Aligned_cols=130 Identities=11% Similarity=0.065 Sum_probs=70.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCCh-hHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNL-SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~-~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|.++|=.|+ +|+.+.+++..+ +.+|+.++.+. ..++.+...++..+.++.++..|+.+... +.-.....
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~--~~~~~~~i--- 118 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAF--CKDAVEET--- 118 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHH--HHHHHHHH---
Confidence 3667887775 566777777654 36888888875 34555556666666667788899877431 10000000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHH----HHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK----KLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~----~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
......+|.|+..+-.+ .... + . ...+.++.. ....-...+++.+.+.++++|.+|+.+.
T Consensus 119 ---~~~~~~iD~lI~~Ag~~---~~~~-~-~-~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 ---VRELGRLDILVNNAAFQ---YPQQ-S-L-EDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred ---HHHcCCCCEEEECCccc---CCCC-C-c-ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 00113689998766321 1100 0 0 011122221 2222344566777777778888888654
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.2 Score=40.01 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
..+|++||-.++|. |..+.++|+.++. +|++++.++.+.+.++
T Consensus 163 ~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 163 DLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 34788998876554 5566677777775 8999999888776443
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.95 Score=43.56 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHH
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLN 169 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~ 169 (329)
|.++..+.+-.+=+.|+|+|||.|..+..++-..+-.|+|+|-|....+
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ 190 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVE 190 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHH
Confidence 4555555555666799999999999999998767789999998854333
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=4.5 Score=36.54 Aligned_cols=131 Identities=11% Similarity=0.004 Sum_probs=68.7
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|-.|+++| |++..+|+.+ +.+|+.++.+....+.+++..+..+ .+.++..|+.+... +.--.+ ....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~--v~~~~~-~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQ--LEAVFA-RIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHH--HHHHHH-HHHH
Confidence 4678999999984 8888887664 3688888888654444444333332 23467788876531 000000 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+..|.++.++-....... ....+..+.++..... .-...+.+.+...++.+|.++..
T Consensus 85 -----~~g~ld~lv~nAg~~~~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 85 -----EWGRLDFLLHSIAFAPKEDL---HGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred -----HcCCCCEEEEcCccCCcccc---cCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 11468999987632211000 0001122333332221 22334556677777778887764
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.34 Score=42.51 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCC
Q psy15212 217 FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 217 fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~ 296 (329)
.|+|+.|||+.....- .+.. .+ ..............+.+..+.++|||||.+++. |......+ ..+..+.+...+
T Consensus 1 VdliitDPPY~~~~~~-~~~~-~~-~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g~ 75 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYF-DY-GDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFGG 75 (231)
T ss_dssp EEEEEE---TSSSCS-------CS-CHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCc-chhh-hc-cCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhhh
Confidence 4899999998632210 0000 00 011235666777888999999999999987764 44333222 244445554323
Q ss_pred cEE
Q psy15212 297 SIR 299 (329)
Q Consensus 297 ~~~ 299 (329)
+..
T Consensus 76 ~~~ 78 (231)
T PF01555_consen 76 FFL 78 (231)
T ss_dssp -EE
T ss_pred hhe
Confidence 443
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=89.20 E-value=2.3 Score=39.84 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=32.6
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMIS 172 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~ 172 (329)
...+.+|++||-.++|. |..+.++|+..+.. |++++.++.+.+.++
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 44577899999986544 55666677777754 999988887766553
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=5 Score=36.59 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=44.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.| |+|+.+.++++.+. .+|+.+|.+...++...+.+...+.++.++.+|+.+..
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 68 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAA 68 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 45777555 55778888876543 68999999988887777766665666778899988743
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.97 E-value=4 Score=37.28 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccchhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKINLKKL 197 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~~~~~ 197 (329)
+++.....+...+|+|+|+-.||..+...+. .+-+.+|++..-++...+-+.+- ++.+.-+.+|....-
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~L---- 146 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELAL---- 146 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHH----
Confidence 3344455688999999999999999887654 58899999999888655554443 455666777765421
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
... ++.-.++++ -+-|+.|.+ ++++. ..+|......+.||-.+...+--
T Consensus 147 ------------a~~-~~~~~Rl~~-flGStlGN~----------tp~e~-------~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 147 ------------AEL-PRGGRRLFV-FLGSTLGNL----------TPGEC-------AVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred ------------hcc-cCCCeEEEE-EecccccCC----------ChHHH-------HHHHHHHHhcCCCcceEEEeccc
Confidence 011 122334443 233555543 33333 23677777889999999988755
Q ss_pred CCcc
Q psy15212 278 LWFE 281 (329)
Q Consensus 278 ~~~~ 281 (329)
..+.
T Consensus 196 ~k~A 199 (321)
T COG4301 196 RKPA 199 (321)
T ss_pred cCHH
Confidence 5544
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=8.1 Score=34.22 Aligned_cols=125 Identities=12% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCCh-hHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNL-SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~-~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
|.++|-.|+ +|+.+.++++.+ +.+|++++.+. ...+.+...++..+..+.++.+|.++... +.-..+ ....
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~--~~~~~~-~~~~- 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEES--VAALMD-TARE- 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHH--HHHHHH-HHHH-
Confidence 567887764 567888887653 25888887764 45555555565555557788899887541 000000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+..|.|+..+.-+... ...++..+. ....-...+++.+.+.++.+|++|+.+
T Consensus 81 ----~~~~~d~vi~~ag~~~~~--~~~~~~~~~-------vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 81 ----EFGGLDALVLNASGGMES--GMDEDYAMR-------LNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred ----hCCCCcEEEECCCCCCCC--CCCcceeeE-------eeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 113689988776422110 111111111 111123456777777777677777664
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.29 Score=39.85 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
..||.|++|+- | -.++|++ |. .++++...+++++||++.--||+ ..|..-|...
T Consensus 49 ~~~Da~ylDgF-s----P~~nPel-Ws-------------~e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-S----PAKNPEL-WS-------------EELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGG-SS-------------HHHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-C----CcCCccc-CC-------------HHHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 68999999973 2 1456773 32 46889999999999988755443 5578888776
Q ss_pred CCcEEecC
Q psy15212 295 KDSIRLNS 302 (329)
Q Consensus 295 ~~~~~~~~ 302 (329)
+|.+...
T Consensus 103 -GF~v~~~ 109 (124)
T PF05430_consen 103 -GFEVEKV 109 (124)
T ss_dssp -TEEEEEE
T ss_pred -CCEEEEc
Confidence 7766544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=4.6 Score=36.08 Aligned_cols=59 Identities=7% Similarity=0.067 Sum_probs=42.4
Q ss_pred CeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.++|-.|+ +|+.+.++++.+ +..|+.++.+..+++.+.+.+...+-.+.++..|..+..
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPE 63 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 46676665 555777776553 369999999998888887777665545778888987643
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.1 Score=39.87 Aligned_cols=42 Identities=14% Similarity=-0.046 Sum_probs=28.1
Q ss_pred CCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 131 RSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 131 ~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
.+|++||=+|+|+ |..++++|+.++. .|+++|.++.+++.+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 4577888776542 3345556666674 5778899988877554
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=4.6 Score=35.74 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+..+++.+. .+|++++.++...+.+.+.++..+..+.++.+|.++..
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPE 68 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHH
Confidence 456777774 7888888876543 59999999998887777777665555778889988754
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.79 E-value=5 Score=35.52 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=45.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.+++..+- .+|+.++.+....+.+...+...+..+.++.+|..+..
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 65 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRD 65 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 567777765 5778888776543 58999999998888888777766656788889987643
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=88.78 E-value=3.5 Score=40.06 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=32.0
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+|+ |..+.++|+..+. .|++.|.++.+++.+++ +|..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~ 232 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE 232 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe
Confidence 4567899887765532 2233455666664 56778998888877654 5654
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=6.8 Score=35.78 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=42.6
Q ss_pred eEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+|=.|+ |+.+.++++.+. .+|+.+|.++..++.+.+.++..+.++.++..|..+..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~ 62 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRE 62 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHH
Confidence 4555554 689999887654 68999999988887777777666666778888987753
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=5.3 Score=35.93 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=41.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|++ |+.+..++..+ |.+|++++.++..++.+...+ ..+..+.++..|..+..
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~ 66 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEA 66 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHH
Confidence 5567766554 66777766543 369999999998887776665 33445778888987754
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.56 E-value=3.5 Score=39.42 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++|++||=.|+|+ |..++++|+..+.+|++++.+..+... .++++|..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~---~~~~~Ga~ 230 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDE---AINRLGAD 230 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhh---HHHhCCCc
Confidence 46789988876532 334455566666788888887665432 23346754
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.51 E-value=7.1 Score=34.46 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=44.0
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.+++..+ +.+|++++.++..+..+...+...+..+.++.+|..+..
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRA 68 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 567886664 677777776543 358999999988887777777666655788888987643
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=88.46 E-value=3.9 Score=39.88 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=34.3
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHH
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIAD---IKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n 174 (329)
.+++|++||=.|+ +-|..++++|+.++ .+|+++|.++.+++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4678999887753 34555666777654 3899999999999988775
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.42 E-value=2.6 Score=40.26 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=32.0
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
..+++|+.||=.|+|. |..+.++|+..+. .++++|.++.+.+.++
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3467888988886533 4455566666774 7999999998877554
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=6.3 Score=35.43 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=43.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.++.++.+++.+.+.+... +.++..+..|..+..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 72 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEA 72 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHH
Confidence 36678877754 56777777654 369999999998888777766554 234677888887754
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.20 E-value=6.9 Score=34.98 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|+.++.+...++.+...++..+.++.++..|+++..
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 73 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 678888885 566777776643 368999999988888887777776666778889988754
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=8.6 Score=33.98 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=45.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
+|.++|=.|+ .|+.+..+++.+ +.+|+.+|.++.+++.+.+.+...+..+.++..|..+.
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 66 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDE 66 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 3668887765 577788777654 36899999999888888777776666677888898764
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.10 E-value=8.4 Score=34.12 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=43.1
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||=.| |+|+.+.++++.+ +.+|++++.++...+.+...+...+..+.++.+|..+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKED 63 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 455555 5678888887654 368999999998888888777666656788888987643
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.91 E-value=4.6 Score=40.68 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=46.6
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.++++.+. .+|+.++.+...++.+.+.++..|..+.++.+|.++..
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 377 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDAD 377 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 456776654 7778888876653 58999999999888888888777777888889998754
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.4 Score=42.91 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=41.6
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHH
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~ 176 (329)
+...+-..+|++.|+++||=+++| |--.+.++...+.+|+|||+|+.....++=.+.
T Consensus 22 EDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 22 EDPRVDMEALNIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCcHHHHHHhCCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 334444668889999999999655 555555554455899999999988877665544
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=7.1 Score=34.51 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=64.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
|.+||=.|+ +|+.+.++++.+. .+|++++.+...++.+.+ +.+..+.++..|..+.....-.+.. .
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~-------~ 74 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARA---ELGESALVIRADAGDVAAQKALAQA-------L 74 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH---HhCCceEEEEecCCCHHHHHHHHHH-------H
Confidence 456665554 5778888776543 689999988766654443 3355567778887764310000000 0
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. -..+.+|.|+..+..+..+.+ +.++.++.... ..--..+++.+.+.++.+|.+++.+.
T Consensus 75 ~-~~~~~id~vi~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S 137 (249)
T PRK06500 75 A-EAFGRLDAVFINAGVAKFAPL-------EDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGS 137 (249)
T ss_pred H-HHhCCCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0 011468999887643321111 11222222211 12233456666666655666666543
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=6.4 Score=35.35 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH-cCC-ceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR-LNL-KATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~-~g~-~v~~~~~D~~~~~ 193 (329)
.+.++|=.|++..+.+..+++.+ +..|+.+|.+...++...+.++. ++. .+.++..|..+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 82 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEA 82 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHH
Confidence 46778888765335666666543 36899999999888887777765 443 4778888987643
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.6 Score=39.24 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=30.4
Q ss_pred CCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++|++||=.|+| -|..+.++|+.++.++++++.++++...+ ++++|..
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~---~~~~Ga~ 227 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEA---LEHLGAD 227 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH---HHhcCCc
Confidence 3678888877442 23334556666667888888877664433 3446764
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=7.4 Score=35.66 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=68.5
Q ss_pred CCCeEEeecCCC-chHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|+++ +|.+..+|+.+ +.+|+.++.+....+.+++..+..+.. ..+..|+.+... +.--.+. ..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~--v~~~~~~-i~- 78 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEH--FKSLAES-LK- 78 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHH--HHHHHHH-HH-
Confidence 367888888874 67888877654 368888888754333444444444433 467788887541 1000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+.+|.++.++-....... ..| .+..+.++.... ..-...+.+.++..++.+|++|+.+.
T Consensus 79 ----~~~g~iDilVnnAG~~~~~~~-~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 79 ----KDLGKIDFIVHSVAFAPKEAL-EGS--FLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred ----HHcCCCCEEEECCccCccccc-ccc--cccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 012578999887632210000 000 111223332222 11223455666777777888877643
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=87.59 E-value=8.6 Score=34.28 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=44.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.| |+|+.+.++++.+- .+|+.++.+...++.+...+...+..+.++.+|..+..
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD 64 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 34555444 66778888876543 69999999998888888888776666778889988754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=7.1 Score=35.36 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+..+++.+ +.+|+.++.+...++.+.+.+... +.++.++..|+.+..
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKRE 71 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHH
Confidence 35677766655 56777777654 369999999999888887776553 445778888988754
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=87.54 E-value=2.9 Score=39.54 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCCCCeEEeecC-CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce
Q psy15212 130 IRSGMYVLDACS-APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182 (329)
Q Consensus 130 ~~~g~~VLDlca-g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v 182 (329)
..||..|-=.|+ |-|..+.++|+.|+.+|+++|.+...- ++.++++|.+.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kk---eea~~~LGAd~ 229 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKK---EEAIKSLGADV 229 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhH---HHHHHhcCcce
Confidence 568887655554 479999999999999999999987443 34466678763
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=3.8 Score=36.77 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=39.1
Q ss_pred eEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
++|-.|+ +|+.+..+++.+. .+|++++.++..++.+...+. +..+.++.+|+.+..
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~ 61 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRA 61 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHH
Confidence 4565554 4777777776543 699999999888777666543 344778889987743
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=87.42 E-value=4.3 Score=38.81 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=34.1
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+ .++|+.++. .|+++|.++.+++.++ .+|..
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~----~lGa~ 233 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAK----KFGAT 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 35688999988864 4444 445566665 7999999999987664 35654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=4.5 Score=36.19 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CE-EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IK-LISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~-v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.| |+|+.+.++++.+. .+ |+.++.++.........+...+..+.++..|..+..
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 69 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVE 69 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 356777666 46778888876543 45 999999887777666666555555777888887643
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=6.1 Score=35.83 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=42.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~ 193 (329)
+..+|-.| |+|+.+.++++.+ +..|++++.++..++.+.+.+...+. .+.++.+|..+..
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 67 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQN 67 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHH
Confidence 44566555 5666777776543 35999999998888877776665554 3788889988754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.3 Score=34.64 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=42.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||-.|++ |+.+.++++.+ +.+|++++.++..++.+...+...+ .++++.+|..+..
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~ 66 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTE 66 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHH
Confidence 5688888874 77888887654 3699999999988877655554433 3677888887643
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=11 Score=34.91 Aligned_cols=128 Identities=9% Similarity=-0.050 Sum_probs=70.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCCh--hHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNL--SRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~--~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|.+||=.|+ +|+.+.++++.+. .+|+....+. ...+.+.+.++..+.++.++.+|..+... ..+.-...
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--- 129 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV--- 129 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH---
Confidence 3667887774 6778888776543 5777666543 34555556666666667788899887531 00000000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. .-+..|.++.++-.... ..+ ....+.++.... ..-...+++.+.+.++++|.+|+.+
T Consensus 130 ----~--~~g~iD~lV~nAg~~~~----~~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 130 ----K--ELGGLDILVNIAGKQTA----VKD--IADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred ----H--HhCCCCEEEECCcccCC----CCC--hhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 0 11468999987742210 000 011122222222 2233457777888888889888754
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=7.4 Score=34.65 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=52.7
Q ss_pred CeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+||=.|+ +|+.+.++++.+ +.+|++.+.++...+.+.......+..+.++.+|..+.. .+. .
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~-----------~ 68 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAI--DRA-----------Q 68 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHH--HHH-----------H
Confidence 45676655 677888777654 369999999888887777777766666788888987753 000 0
Q ss_pred ccCCCCCCEEEEccC
Q psy15212 211 FYKNKYFDRILADLP 225 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~P 225 (329)
......|.|+.++-
T Consensus 69 -~~~~~id~vi~~ag 82 (257)
T PRK09291 69 -AAEWDVDVLLNNAG 82 (257)
T ss_pred -HhcCCCCEEEECCC
Confidence 11247899998764
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=9.3 Score=33.82 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=44.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+. .+|+.++.++.+++.+...+... +..+.++..|..+..
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 66 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHD 66 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHH
Confidence 34677666 57788888887643 59999999999988877776544 445788889988753
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.5 Score=39.74 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhH-HHHHHHHHHHcCCc
Q psy15212 131 RSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSR-LNMISENLKRLNLK 181 (329)
Q Consensus 131 ~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~r-l~~l~~n~~~~g~~ 181 (329)
++|++||=.|+|+ |..+.++|+.++.+|++++.+..+ .+. ++.+|..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~----a~~lGa~ 225 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREA----IDRLGAD 225 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHH----HHhCCCc
Confidence 5789988776532 334455566667789999887543 333 3456764
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=5.1 Score=35.69 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc-CCc-eEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL-NLK-ATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~-g~~-v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.+++..+. .+|+.++.++..++.+.+.+... +-. +.++.+|+.+..
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 68 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQE 68 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHH
Confidence 556776665 5778888887643 58999999988887777666432 323 566688988753
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=8.1 Score=33.99 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.+++..+ +.+|+.+ +.++...+.+.+.+...+..+.++..|..+..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEE 68 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 34666666 4678888877643 3588888 99888888777777765555788899988754
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=9.8 Score=33.68 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=41.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEE-EeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLIS-VDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~a-vD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+- .+|+. .+.+....+.+.+.++..+..+.++.+|..+..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVE 67 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 557776665 5788888876543 46665 466777777776677666666778889987653
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=8 Score=34.19 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=42.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+...+.. +..+.++.+|..+..
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~ 66 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEA 66 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHH
Confidence 456666654 567777776543 35899999999888777766654 455788889988754
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=86.71 E-value=9.4 Score=33.44 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=45.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.++...+.+...++..+.++.++.+|..+..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEA 67 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 457886665 788888887654 358999999998888777777766766788889987643
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.8 Score=37.98 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=33.7
Q ss_pred cCCCCCCeEEeecCC-CchHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSA-PGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag-~G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++|++||=.++| -|..+.++|+..+. .++++|.++.+.+.++ .+|..
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK----EYGAT 213 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCc
Confidence 346788898887543 23344556666664 7999999998876665 45653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=18 Score=33.76 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=42.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC----------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN----------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~----------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|-.|++ +|++..+++.+ +.+|+.++.+ +++++.+.+.++..+..+.++..|..+..
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 80 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPE 80 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 36678888755 45777777654 3688888886 34666666667666666677889988754
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=86.53 E-value=9.3 Score=31.47 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=69.0
Q ss_pred EEeecCCCchHHHHHHHhC---C-CEEEEEeCC--hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---D-IKLISVDNN--LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~-~~v~avD~~--~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
||=.|++ |+.+..+++.+ + ..|+.+..+ ..+++.+.+.++..+.++.++..|..+...-+-.+ +.. ..
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~--~~~-~~-- 76 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALI--EEV-IK-- 76 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHH--HHH-HH--
T ss_pred EEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccc--ccc-cc--
Confidence 4444444 56666665542 2 488888888 78888888888888866899999988754100000 000 00
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
....+|.++..+.....+.+... +.+...+.. .....+.+.+.. +++|.+|+.+
T Consensus 77 ---~~~~ld~li~~ag~~~~~~~~~~-------~~~~~~~~~~~n~~~~~~~~~~~~~--~~~g~iv~~s 134 (167)
T PF00106_consen 77 ---RFGPLDILINNAGIFSDGSLDDL-------SEEELERVFRVNLFGPFLLAKALLP--QGGGKIVNIS 134 (167)
T ss_dssp ---HHSSESEEEEECSCTTSBSGGGS-------HHHHHHHHHHHHTHHHHHHHHHHHH--HTTEEEEEEE
T ss_pred ---ccccccccccccccccccccccc-------cchhhhhccccccceeeeeeehhee--ccccceEEec
Confidence 12579999987765544443322 222222221 122233444444 6788877765
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=11 Score=33.48 Aligned_cols=133 Identities=13% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.+||=.| |+|+.+.++++.+. .+|+.+ ..+...++.+...+...+..+.++..|..+... +.-..... ...
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~--i~~~~~~~-~~~ 81 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDG--VKKLVEQL-KNE 81 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHH--HHHHHHHH-HHH
Confidence 45777666 57889999887543 466553 556655555554454444457788899887541 10000000 000
Q ss_pred ccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHH----HHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK----KLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~----~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.. ......|.|+..+--...+.+ +..+.+... ........+++.+.+.++..|.+|+.+.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTI-------ENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 000 011368999876522211111 111222222 2223344566666776677788777643
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.21 E-value=5.4 Score=38.07 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=33.9
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|+ |+.+ .++|+..+. +|+++|.++.+.+.++ .+|+.
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~----~~ga~ 231 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK----EFGAT 231 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 34678999988764 5544 445666665 7999999999887764 35653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.18 E-value=9.8 Score=35.18 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.+.+.++.+.+.+...+..+.++..|..+..
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLD 102 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 456776664 577888887654 369999999999988888877766666778889987643
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=9.9 Score=33.84 Aligned_cols=132 Identities=11% Similarity=0.116 Sum_probs=66.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
|..+|=.|+ +|+.+.++++.+. ..|+..+ .+...++.+...+...+..+..+..|..+... ....-........
T Consensus 4 ~k~~lItGa-s~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 4 GKVALVTGA-SRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 556776764 4567888876543 5776654 45566666655565555556667778776430 0000000000000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. +.....|.++.++--+..+.+. ..+.++... ...--..+++.+++.++.+|++|+.+
T Consensus 83 ~---~g~~~id~lv~~Ag~~~~~~~~-------~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~is 144 (252)
T PRK12747 83 R---TGSTKFDILINNAGIGPGAFIE-------ETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINIS 144 (252)
T ss_pred h---cCCCCCCEEEECCCcCCCCCcc-------cCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEEC
Confidence 0 0113689998876432222111 112222221 12223446666777777778888764
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=10 Score=33.81 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=44.6
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..-++.++|-.|++ |+.+.++++.+ +.+|++++.++..++.+.+...+. ++.++..|+.+..
T Consensus 6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~ 71 (264)
T PRK12829 6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA--KVTATVADVADPA 71 (264)
T ss_pred hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHH
Confidence 334467899988775 77888877654 368999999988777665554432 4677888887644
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.00 E-value=7.5 Score=34.18 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=50.8
Q ss_pred EEEechhHHHHhhhc--CCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEE
Q psy15212 114 CSIQDAAAQLAAPLL--DIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLK-ATLI 185 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l--~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~ 185 (329)
=.+|.++-+..-+.| ..+| +.|++.|..-||-++..|..+ | .+|+++|++-.-+...... ++ +.++
T Consensus 50 p~~k~p~D~~~yQellw~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~ 123 (237)
T COG3510 50 PCIKSPSDMWNYQELLWELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFI 123 (237)
T ss_pred cccCCHHHHHHHHHHHHhcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEE
Confidence 344555555444432 2344 599999999999998887654 2 5999999987665543332 44 8899
Q ss_pred ecCccccc
Q psy15212 186 LSDISKIN 193 (329)
Q Consensus 186 ~~D~~~~~ 193 (329)
.++.+.+.
T Consensus 124 egss~dpa 131 (237)
T COG3510 124 EGSSTDPA 131 (237)
T ss_pred eCCCCCHH
Confidence 99988765
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.96 E-value=24 Score=32.29 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|.. |..-+|+=-.+.++.... -++.++|+.++-...+++|+. -+-++++..+|...-. ..
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~-~d~~vrv~~~DG~~~l-~a------------- 149 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFA-GDRRVRVLRGDGFLAL-KA------------- 149 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhC-CCcceEEEecCcHHHH-hh-------------
Confidence 344544 666666655554444322 599999999999999999998 2334889999975432 00
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
...+.++=-.||+|||+- .+++...+.+ -|+++++-. ++|+. |-+.|--+-+.++.
T Consensus 150 ~LPP~erRglVLIDPPfE---------------~~~eY~rvv~----~l~~~~kRf-~~g~y----aiWYPik~r~~~~~ 205 (279)
T COG2961 150 HLPPKERRGLVLIDPPFE---------------LKDEYQRVVE----ALAEAYKRF-ATGTY----AIWYPIKDRRQIRR 205 (279)
T ss_pred hCCCCCcceEEEeCCCcc---------------cccHHHHHHH----HHHHHHHhh-cCceE----EEEEeecchHHHHH
Confidence 001223456999999965 1223333332 334444333 45543 23678888888999
Q ss_pred HHhhC
Q psy15212 290 FSKNH 294 (329)
Q Consensus 290 ~l~~~ 294 (329)
|++..
T Consensus 206 f~~~L 210 (279)
T COG2961 206 FLRAL 210 (279)
T ss_pred HHHHH
Confidence 98765
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=12 Score=33.87 Aligned_cols=133 Identities=10% Similarity=0.032 Sum_probs=65.0
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++.| |.+..+++.+ +.+|+.++.+....+.+++..+..|.. .++..|+.+... +.--.+. ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~--v~~~~~~-~~- 81 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKS--ISNLFDD-IK- 81 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHH--HHHHHHH-HH-
Confidence 3567888888775 6666666543 368888887743333344433333432 355788877531 0000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+..|.++.++-......+. .+ .+..+.++..... .-...+++.+...++.+|++|..+.
T Consensus 82 ----~~~g~iDilVnnag~~~~~~~~-~~--~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS 147 (260)
T PRK06603 82 ----EKWGSFDFLLHGMAFADKNELK-GR--YVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTY 147 (260)
T ss_pred ----HHcCCccEEEEccccCCccccc-Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Confidence 0125689888755322110000 01 1122233322221 2233456666777777888876543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=6.8 Score=35.41 Aligned_cols=58 Identities=14% Similarity=-0.024 Sum_probs=43.0
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+||-.| |+|+.+.++++.+ +.+|+.++.+...++.+...+...+-.+.++.+|..+..
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 62 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYS 62 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 455454 5677888877654 369999999998888887777776666778888987643
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.84 E-value=4.7 Score=38.27 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=61.3
Q ss_pred CCCCCCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 129 DIRSGMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 129 ~~~~g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..++|++||=.|++ -|..++++|+..++.++++-.+++..+ .++++|.. +.....|..+.- .
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v-~--------- 204 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQV-R--------- 204 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHH-H---------
Confidence 47889999988753 456778888877756666666665444 45566765 233333322211 0
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
....+..+|.|+ |+- | .+.+..+++.|+++|+++....+
T Consensus 205 -----~~t~g~gvDvv~-D~v--G--------------------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 205 -----ELTGGKGVDVVL-DTV--G--------------------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred -----HHcCCCCceEEE-ECC--C--------------------------HHHHHHHHHHhccCCEEEEEecC
Confidence 111334799997 221 0 13466678889999999876553
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=8.8 Score=34.34 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCC----hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNN----LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~----~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+.+||=.| |+|+.+.++++.+. .+|+.++.+ ....+.+.+.++..+..+.++..|..+.. .+.-.... .
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~--~~~~~~~~-~ 83 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAA--AVEKLFDD-A 83 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHH--HHHHHHHH-H
Confidence 55777666 56678888886543 466666543 34444555555555656778889988653 11000000 0
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. . ..+..|.++..+- .....+ .+..+.++.... ..-...+++.+.+.++++|.+++.++|
T Consensus 84 ~---~--~~~~id~li~~ag-----~~~~~~--~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss 147 (257)
T PRK12744 84 K---A--AFGRPDIAINTVG-----KVLKKP--IVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTS 147 (257)
T ss_pred H---H--hhCCCCEEEECCc-----ccCCCC--cccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecc
Confidence 0 0 1146899887652 211111 122223333221 112234677777778888887775444
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.59 E-value=12 Score=33.60 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCCeEEeecCC-CchHHHHHHHhCC---CEEEEEeCCh--hHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIAD---IKLISVDNNL--SRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKK 204 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~~---~~v~avD~~~--~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~ 204 (329)
.|..+|=.|+| ++|.+..+++.+. .+|+..+.+. +.++.+.+ ..+-.+..+..|..+... ..+. +
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~i~~~~-~---- 77 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLPEPAPVLELDVTNEEHLASLA-D---- 77 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcCCCCcEEeCCCCCHHHHHHHH-H----
Confidence 36789999986 6888888887543 6888888753 33343333 223245677888877541 0000 0
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. . ....+.+|.++.++--.....+. .+ ....+.++... ...-...+.+.+...++++|.+|..+
T Consensus 78 --~-~-~~~~g~iD~li~nAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 78 --R-V-REHVDGLDGVVHSIGFAPQSALG-GN--FLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred --H-H-HHHcCCCcEEEEccccccccccC-CC--cccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 0 0 00125799998766321100000 01 00111222221 11122345666777788889887654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=13 Score=33.06 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.++..+.++.++..|..+..
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEA 68 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 556776655 467777777653 369999999999988888888777766778888987754
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.51 E-value=15 Score=33.85 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=69.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCC--hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNN--LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~--~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|.++|-.|+ +|+.+.++++.+. .+|+.++.+ ....+.+.+.+...+..+.++..|+.+... +.-..+..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~--~~~~~~~~-- 122 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKF--ARSLVHEA-- 122 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHH--HHHHHHHH--
Confidence 4568888885 5777887776543 578877654 345666666666666667778889887431 00000000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...-+..|.++..+--+. ..... ...+.++.... ..-...+++.+.+.++.+|.+|+.+
T Consensus 123 ----~~~~g~id~lv~~Ag~~~--~~~~~----~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 123 ----HKALGGLDIMALVAGKQV--AIPDI----ADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred ----HHHhCCCCEEEECCCCCc--CCCCh----hhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 001246898887653210 00000 11122333222 2223356677777777889888753
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=7.3 Score=34.50 Aligned_cols=129 Identities=12% Similarity=-0.008 Sum_probs=68.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.+||-.| |+|+.+.++++.+. ..++.+. .+..........+...+..+.++..|..+.. .+.-..+ ..
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~----~~ 78 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTRE--GCETLAK----AT 78 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHH--HHHHHHH----HH
Confidence 56788777 56778888876543 4665543 4455555544555555555667778887643 0000000 00
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. .-...|.|+..+.....+.+. ..+.+.... ...-...+++.+.+.++.+|.+++.+..
T Consensus 79 ~~--~~~~~d~vi~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~ 142 (252)
T PRK06077 79 ID--RYGVADILVNNAGLGLFSPFL-------NVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASV 142 (252)
T ss_pred HH--HcCCCCEEEECCCCCCCCChh-------hCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcch
Confidence 00 014689999877543222211 111111111 1122344566667777778888887654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=6.5 Score=36.33 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=40.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||-.|+ +|+.+.++++.+. .+|+.++.++..++.+.+.+.. +..+..+..|..+..
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHH
Confidence 4667887764 5667777776543 6999999998887766655432 333555668887643
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=9.5 Score=33.76 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=41.2
Q ss_pred eEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
+|+-.| |+|+.+.++++.+- .+|++++.++...+.+.+.+... +..+.++.+|..+..
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTA 64 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChH
Confidence 566555 56788888776543 59999999998887666665443 234788889988753
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=11 Score=34.29 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=67.4
Q ss_pred CCCeEEeecCCC-chHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|..+|-.|++. +|.+..+|+.+ +.+|+.++.+....+.+++..+..|. ...+..|+.+... ..+. +
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~-~~~~~~Dv~d~~~v~~~~-~------ 77 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS-DFVLPCDVEDIASVDAVF-E------ 77 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC-ceEEeCCCCCHHHHHHHH-H------
Confidence 367899999886 47777777654 36888888776544444444444443 2356788877541 0000 0
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCC--CCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNP--DIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p--~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. . ....+..|.++.++- .....| ......+.++..... .--..+++.++..++.+|.+|..+.
T Consensus 78 ~-~-~~~~g~iD~lVnnAG-----~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS 146 (271)
T PRK06505 78 A-L-EKKWGKLDFVVHAIG-----FSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTY 146 (271)
T ss_pred H-H-HHHhCCCCEEEECCc-----cCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcC
Confidence 0 0 001257899887663 211110 000112223222211 1123355666677777788877543
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=8 Score=35.20 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=68.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhH-------HHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSR-------LNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~r-------l~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.|.++|=.|| +|+.+.++++.+. ..|+.++.+... ++.+.+.+...+.++.++.+|+++.. .+.-..
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~--~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDED--QVAAAV 81 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHH--HHHHHH
Confidence 3556775555 6778888876543 689998886542 44444555555666778889987754 110000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC--CCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK--PGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk--pgG~lvysT 275 (329)
.. -.. .-+.+|.|+..+.....+.+ +..+.++.... ..-...+++.+...++ .+|.+++.+
T Consensus 82 ~~----~~~--~~g~id~li~~ag~~~~~~~-------~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~is 148 (273)
T PRK08278 82 AK----AVE--RFGGIDICVNNASAINLTGT-------EDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLS 148 (273)
T ss_pred HH----HHH--HhCCCCEEEECCCCcCCCCc-------ccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 00 000 11468999988754332221 11222222211 1223445555555554 357777765
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
..
T Consensus 149 s~ 150 (273)
T PRK08278 149 PP 150 (273)
T ss_pred Cc
Confidence 43
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=13 Score=34.72 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.+||=.| |+|+.+.++++.+. .+|++++.++.+++.+...+.. +.++.+|..+... +.--.. .
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~----v~~~~~Dl~d~~~--v~~~~~-----~ 92 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG----VEVVMLDLADLES--VRAFAE-----R 92 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh----CeEEEccCCCHHH--HHHHHH-----H
Confidence 356788777 45778888887543 5999999998877766554432 5678889887541 100000 0
Q ss_pred ccccCCCCCCEEEEccCC
Q psy15212 209 FRFYKNKYFDRILADLPC 226 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PC 226 (329)
+ .......|.|+.++..
T Consensus 93 ~-~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 F-LDSGRRIDILINNAGV 109 (315)
T ss_pred H-HhcCCCCCEEEECCCC
Confidence 0 0012468999988754
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.11 E-value=6.1 Score=36.96 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=34.0
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
...+++|++||-.++|. |..+.++|+..+.+|+++..++++.+.++
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAR 200 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH
Confidence 34567899999986543 55667777777789999988888776653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.03 E-value=8.7 Score=34.41 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+..+++.+ +..|+.++.+ ...+.+.+.+...+-.+.++..|..+..
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 76 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPE 76 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 36678877764 56777776554 3688888887 5566666666666655778889988754
|
|
| >KOG4174|consensus | Back alignment and domain information |
|---|
Probab=85.01 E-value=24 Score=32.28 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhH------HHHHHHH---HHHcCCceEEEecCccccchhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSR------LNMISEN---LKRLNLKATLILSDISKINLKKLYI 199 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~r------l~~l~~n---~~~~g~~v~~~~~D~~~~~~~~~~~ 199 (329)
...+||-+|=|-=.++..++...+ +.|+|..++..- .-.++.| ++++|+.| +...|++.+...
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I-~h~Vdv~sl~~~---- 130 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTI-LHGVDVTSLKFH---- 130 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCce-EecccceeEEec----
Confidence 356888888888888888887766 445444443322 2234445 45566542 333455554310
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK-PGGKLLFVTCSL 278 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk-pgG~lvysTCS~ 278 (329)
..+.-+.||.|+-+-|-+|.|.- ...+ ..-+....++-+.+|+.|-.+|+ ..|.++.+--+.
T Consensus 131 ----------~~~~~~~~d~IiFNFPH~G~g~~-~e~d------~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t 193 (282)
T KOG4174|consen 131 ----------ADLRLQRYDNIIFNFPHSGKGIK-FEQD------RNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTT 193 (282)
T ss_pred ----------ccccccccceEEEcCCCCCCCcc-cccc------hHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 01234789999999999999874 1111 11122355677889999999999 778777653222
Q ss_pred CccccHHHHHHHHhhCCCcEE
Q psy15212 279 WFEESEEQAIIFSKNHKDSIR 299 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~~ 299 (329)
.| -|...++.+.+.. +..+
T Consensus 194 ~P-~~~W~ik~Lak~~-gl~L 212 (282)
T KOG4174|consen 194 YP-FNPWNIKFLAKEF-GLTL 212 (282)
T ss_pred CC-CchhhhhHhhhhc-cccc
Confidence 33 2446666555443 4443
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=84.97 E-value=6.3 Score=36.93 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=30.5
Q ss_pred cCCCCCCeEEeecCCCchHH---HHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACSAPGGKT---CHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt---~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
+.+++|++||=.|+ |..+ .++|+.++.+|++++.++++++.++
T Consensus 159 ~~~~~~~~vlV~g~--g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 159 SGAKPGDLVAVQGI--GGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred cCCCCCCEEEEECC--cHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 45778888888763 4444 4455556678999999988877663
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.7 Score=36.42 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=50.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
.+..+.+|+|+|-|..-++.++..--..+++|+++-.+...+-..-|.|+. ..+..-|.-+.+
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 454589999999999999888643357899999999998888888888885 677777777665
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.81 E-value=13 Score=33.54 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=38.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+ +.+|+.+|.+...++.+.+. .+.++.++.+|..+..
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~ 65 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LGERARFIATDITDDA 65 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCCeeEEEEecCCCHH
Confidence 55777666 4567777777654 36999999988766554433 3445778888987753
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.80 E-value=12 Score=33.18 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=43.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDIS 190 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~ 190 (329)
..++.+||=.| |+|+.+..+++.+ +.+|++++.+...++.+.+.+...+.. +.++..|+.
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 34577888887 4677888777654 359999999998888877777766543 667777775
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.76 E-value=7.5 Score=34.44 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+.++++.+- ..|+.++.+. ...+.+.+++.+..+.++..|+.+..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~ 65 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRFLSLTADLSDIE 65 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCCceEEEECCCCCHH
Confidence 36678877774 667777776543 5899988764 34455556666655788889988754
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=12 Score=33.04 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=42.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|| +|+.+.++++.+ +.+|++++.+...+......+. .+..+.++.+|..+..
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~ 66 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAE 66 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHH
Confidence 456776665 577888887653 2589999998887776666655 4555788889988754
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.48 E-value=11 Score=34.10 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=42.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.++.+ ..++.+.+.++..+.++.++..|..+..
T Consensus 5 ~~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 67 (272)
T PRK08589 5 ENKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQ 67 (272)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHH
Confidence 3556776655 456777777654 3699999998 6777766677666666778888987653
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=16 Score=33.22 Aligned_cols=133 Identities=10% Similarity=-0.003 Sum_probs=68.8
Q ss_pred CCCeEEeecCC-CchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++ ++|.+..+|+.+. .+|+.++.+....+.+++..+..+. ...+..|..+... +.--.. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~--v~~~~~----~ 81 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEAS--IDAVFE----T 81 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHH--HHHHHH----H
Confidence 35678888887 5889988887653 5887776654333444444444442 3457788876431 100000 0
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ....+..|.++.++-....+... .| .+..+.++.... ..-...+++.+...++.+|.++..+.
T Consensus 82 -~-~~~~g~iD~lv~nAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss 149 (272)
T PRK08159 82 -L-EKKWGKLDFVVHAIGFSDKDELT-GR--YVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY 149 (272)
T ss_pred -H-HHhcCCCcEEEECCcccCccccc-cC--cccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 0 00124689999877432110000 00 011122222222 12234566677777777888876653
|
|
| >KOG3673|consensus | Back alignment and domain information |
|---|
Probab=84.07 E-value=3.8 Score=41.23 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH--HHHhcCCCCCEEE
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN--NLWKMLKPGGKLL 272 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~--~a~~~LkpgG~lv 272 (329)
........|.-.|-.| ++.++....-|.-+.. -|+.++++||.++
T Consensus 351 ~GVHf~MADGGFSVEG-------------QeNiQEILSKqLyLCQfL~aL~IvR~gG~F~ 397 (845)
T KOG3673|consen 351 LGVHFMMADGGFSVEG-------------QENIQEILSKQLYLCQFLVALCIVREGGNFF 397 (845)
T ss_pred cceEEEEecCCccccc-------------hhhHHHHHHHHHHHHHHHHHheeeecCCeEE
Confidence 3456666666555333 3556666555544333 5678999999887
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=84.04 E-value=5.4 Score=37.35 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCCCCCeEEeecCC-CchHHHHHHHhCC-CEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSA-PGGKTCHLLEIAD-IKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag-~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||-.++| .|..+.++|+..+ ..|++++.++.+.+.+++
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 46788999996653 2556666777777 489999888877765543
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.04 E-value=2.4 Score=39.11 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=41.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g 179 (329)
-.+|+.|||..+|+|....+.. .++...+++|+++.-++.+.+++.+..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~-~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAK-NLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHH-HcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 4679999999999997766555 455689999999999999999988653
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=19 Score=36.97 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-----CC----ceEEEecCccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-----NL----KATLILSDISKIN 193 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-----g~----~v~~~~~D~~~~~ 193 (329)
+.+.|..||=.|+ +|+.+.++++.+ |.+|++++.+..+++.+.+.+... |. .+.++.+|+.+..
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 3456767776665 688888887654 358999999999887776665442 21 2678889988754
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.80 E-value=15 Score=32.87 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=43.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+- .+|+.++ .+...++.+...++..+..+.++..|..+..
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLP 65 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 346777775 5678888887543 5777764 4666777777777777777888899988754
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=83.72 E-value=15 Score=34.08 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=32.2
Q ss_pred cCCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHH
Q psy15212 128 LDIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMI 171 (329)
Q Consensus 128 l~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l 171 (329)
....+|++||-.++| .|..+.++|+..+.+|++++.++.+.+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA 202 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 456788899988664 45555556666667899999998887665
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=16 Score=32.10 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=42.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISK 191 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~ 191 (329)
+|.+||=.| |+|+.+.++++.+. .+|+.++.++.+++.+...+...+- .+.++..|..+
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 356788887 56778888776543 6899999999988887777765543 35566667643
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=83.53 E-value=11 Score=34.95 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=33.7
Q ss_pred cCCCCCCeEEeecCCCchHHHHH---HHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHL---LEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~l---a~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++|++||=.| .|+.+..+ |+.++.+|++++.++++.+.+++ +|..
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~ 201 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE 201 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc
Confidence 4567888988874 45655554 45556689999999988877664 5654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.44 E-value=13 Score=34.52 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=31.1
Q ss_pred hcCCCCCCeEEeecCC-CchHHHHHHHhCCCE-EEEEeCChhHHHHH
Q psy15212 127 LLDIRSGMYVLDACSA-PGGKTCHLLEIADIK-LISVDNNLSRLNMI 171 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag-~G~kt~~la~~~~~~-v~avD~~~~rl~~l 171 (329)
....++|++||..|+| .|..+.++|+..+.+ |++++.++++.+.+
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA 200 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 4457789999998643 134455566666644 89999998887665
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=6.3 Score=35.41 Aligned_cols=130 Identities=10% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|..+|-.|++. +|.+..+++.+. .+|+.++.+....+.+++. . +-.+.++..|+.+... ..+. + . ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~v~~~~-~--~-~~ 78 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-V--DEEDLLVECDVASDESIERAF-A--T-IK 78 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-c--cCceeEEeCCCCCHHHHHHHH-H--H-HH
Confidence 367899999886 678888876543 6888888774322222221 1 2236678889876531 0000 0 0 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+.+|.++.++-......+ ..| .+..+.++..... .-...+.+.+...++.+|++++.+.
T Consensus 79 ---~--~~g~iD~lv~nAg~~~~~~~-~~~--~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss 144 (252)
T PRK06079 79 ---E--RVGKIDGIVHAIAYAKKEEL-GGN--VTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY 144 (252)
T ss_pred ---H--HhCCCCEEEEcccccccccc-cCC--cccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence 0 11568999887632210000 001 1112233332221 1233455666677777888776543
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=12 Score=33.91 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=38.1
Q ss_pred EEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
+|=.| |+|+.+.++++.+ +..|+.++.++..++.+.+.+...+.. +.++..|..+..
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYD 63 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHH
Confidence 33344 4667777776643 368999999888887777776655544 455678887643
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=83.43 E-value=4.4 Score=36.95 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 123 LAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 123 l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
+.+..+..+ ..-+||.+|+|+|--++.+|...+..+.--| .+..+..++.|..+
T Consensus 76 ~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD-~~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 76 LTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTD-LPKVVENLKFNRDK 130 (248)
T ss_pred hhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCC-chhhHHHHHHhhhh
Confidence 333344333 3557999999999888777765666776666 45555555555433
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.28 E-value=19 Score=32.31 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=52.7
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCC-----------hhHHHHHHHHHHHcCCceEEEecCccccch-h
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNN-----------LSRLNMISENLKRLNLKATLILSDISKINL-K 195 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~-----------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~ 195 (329)
+|.+||=.|++. |+.+.++++.+. .+|+..+.+ ......+.+.+++.|..+.++..|..+... .
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 467899899874 688888776543 577766432 233445566677777777888899876430 0
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
.+.-... . .-+..|.|+.++-+.
T Consensus 85 ~~~~~~~-------~--~~g~id~li~~ag~~ 107 (256)
T PRK12859 85 ELLNKVT-------E--QLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHH-------H--HcCCCcEEEECCCCC
Confidence 0000000 0 113589999988654
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.7 Score=43.53 Aligned_cols=101 Identities=26% Similarity=0.299 Sum_probs=66.8
Q ss_pred eEEeecCCCchHHHH---HHHhCC--CEEEEEeCChhHHHHHHH-HHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 135 YVLDACSAPGGKTCH---LLEIAD--IKLISVDNNLSRLNMISE-NLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 135 ~VLDlcag~G~kt~~---la~~~~--~~v~avD~~~~rl~~l~~-n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|+=+|||-|-..-. +|+... .+++|+|.++.++..++. |++-.+-.|+++..|++.+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~--------------- 434 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN--------------- 434 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC---------------
Confidence 578899999975544 444444 699999999999988876 23333445999999999876
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.+.++.|.++..- .|.+.-+ . +--+-|.-|-++|||.|+-+=
T Consensus 435 ---ap~eq~DI~VSEL----LGSFGDN-----E-----------LSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 435 ---APREQADIIVSEL----LGSFGDN-----E-----------LSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ---CchhhccchHHHh----hccccCc-----c-----------CCHHHHHHHHhhcCCCceEcc
Confidence 1236788876211 1222111 0 112467888889999987763
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=18 Score=32.78 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=36.6
Q ss_pred CCCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++. +|.+..+++.+. ..|+.++.+. +++...+.+....-.+..+..|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDA 69 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHH
Confidence 366788889887 488777776543 5888888763 332222222222213456778887754
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.04 E-value=8 Score=34.33 Aligned_cols=60 Identities=13% Similarity=-0.053 Sum_probs=43.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.|..+|=.|++. +.+..++..+ +..|+.++.+...++.+.+.++..+.++..+..|..+.
T Consensus 4 ~~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~ 66 (227)
T PRK08862 4 KSSIILITSAGS-VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQ 66 (227)
T ss_pred CCeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCH
Confidence 356777777666 4566665443 36899999999999888887877776666677787654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=16 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=39.9
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+. .+|+.+|.+...++.+.+.+ +..+.++.+|..+..
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~ 65 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---GPAAIAVSLDVTRQD 65 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHH
Confidence 45677665 66778888886543 69999999988777655443 334677888887653
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=82.97 E-value=30 Score=32.40 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCeEEeecCCCch---HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGG---KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~---kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|+.||=-|+|.|- .+.++|++ +++++..|++.+-.....+.+++.| .+.....|.++.. +++--. ++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~e--ei~~~a-----~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDRE--EIYRLA-----KK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHH--HHHHHH-----HH
Confidence 47899999999884 33444443 3599999999999999999999887 7788888988754 111000 00
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH--------HHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL--------SKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l--------~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.. ..-+..|.++.+| |++..++- +..+.+.++.. -..-+.+|....+ ++.|++|-.
T Consensus 108 Vk-~e~G~V~ILVNNA-----GI~~~~~l--l~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~--~~~GHIV~I 171 (300)
T KOG1201|consen 108 VK-KEVGDVDILVNNA-----GIVTGKKL--LDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLE--NNNGHIVTI 171 (300)
T ss_pred HH-HhcCCceEEEecc-----ccccCCCc--cCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHh--cCCceEEEe
Confidence 00 0225788888776 44433321 23344444432 2223445555444 267888743
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.93 E-value=15 Score=32.93 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=43.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|++++.++..++.+...+... +..+.++..|..+..
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~ 70 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPE 70 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHH
Confidence 567777774 566777776543 369999999998888877777654 445778888887643
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=7.3 Score=34.91 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=39.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|-.|+ +|+.+..+++.+ +.+|+.++.+. .+.+.+.++..+.++.++..|..+..
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGRKFHFITADLIQQK 68 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCCeEEEEEeCCCCHH
Confidence 4677887775 567888877654 36888887653 24445555556666778889988754
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=82.78 E-value=3.7 Score=37.49 Aligned_cols=120 Identities=17% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---C---CEEEEEeCCh--------------------------hHHHHHHHHHHHcC
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---D---IKLISVDNNL--------------------------SRLNMISENLKRLN 179 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~---~~v~avD~~~--------------------------~rl~~l~~n~~~~g 179 (329)
|| .|+++|+--|+.+..++..+ + -+|++.|.-+ ..++..++|+.++|
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 45 89999999999877665432 2 4788888522 13556667777777
Q ss_pred C---ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHH
Q psy15212 180 L---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCK 256 (329)
Q Consensus 180 ~---~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~ 256 (329)
+ +++++.+.+.+.- +..+.+++-++-+|.- +.+--+.
T Consensus 154 l~~~~v~~vkG~F~dTL----------------p~~p~~~IAll~lD~D------------------------lYesT~~ 193 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTL----------------PDAPIERIALLHLDCD------------------------LYESTKD 193 (248)
T ss_dssp TSSTTEEEEES-HHHHC----------------CC-TT--EEEEEE---------------------------SHHHHHH
T ss_pred CCcccEEEECCcchhhh----------------ccCCCccEEEEEEecc------------------------chHHHHH
Confidence 6 2788888765422 1112345555555532 1111345
Q ss_pred HHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 257 ILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 257 lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
.|+..+..|.|||++++-.-.. +.. ...|..|.+++
T Consensus 194 aLe~lyprl~~GGiIi~DDY~~-~gc-r~AvdeF~~~~ 229 (248)
T PF05711_consen 194 ALEFLYPRLSPGGIIIFDDYGH-PGC-RKAVDEFRAEH 229 (248)
T ss_dssp HHHHHGGGEEEEEEEEESSTTT-HHH-HHHHHHHHHHT
T ss_pred HHHHHHhhcCCCeEEEEeCCCC-hHH-HHHHHHHHHHc
Confidence 7899999999999999765443 333 34567788777
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=82.75 E-value=15 Score=32.68 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+. .+|+.+|.++.+...+.+ ..+..+.++.+|.++..
T Consensus 10 ~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~ 69 (255)
T PRK05717 10 GRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALGENAWFIAMDVADEA 69 (255)
T ss_pred CCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcCCceEEEEccCCCHH
Confidence 567886665 5778888877653 699999988776554433 33434678889988753
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.74 E-value=27 Score=32.26 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=42.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.| |+|+.+.++++.+. .+|+.++.+....+.+.+.+... +..+.++..|..+..
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA 80 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence 456777555 56788888886543 58999999888877666665543 234778888988754
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=11 Score=35.13 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC-hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN-LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~-~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|++ |+.+.++++.+ +.+|+.+|.+ ...++.+.+.+...|..+.++..|+.+..
T Consensus 12 ~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~ 75 (306)
T PRK07792 12 GKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRA 75 (306)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 5677755554 66777777654 3689988874 45566666666666666778888987743
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=82.60 E-value=10 Score=35.96 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCCeEEeecCCCchHHHH---HHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 131 RSGMYVLDACSAPGGKTCH---LLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~---la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++|++||=.++ |+.+.. +|+.++. +|++++.++.+.+.++ ++|+.
T Consensus 176 ~~g~~vlI~g~--g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~ 224 (361)
T cd08231 176 GAGDTVVVQGA--GPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGAD 224 (361)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCC
Confidence 47888887753 565544 5555665 8999999888876553 45654
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=33 Score=30.98 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=43.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.|++ |+.+.+++..+ +..|+.++.+...++.+.+.+...+..+.++.+|..+..
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 72 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKE 72 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 5567766654 56777776654 369999999988888777777766666778889987643
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.71 E-value=19 Score=32.04 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.|+ +|+.+.++++.+ +..|+.++.++... .+.+.+...+.++.++..|..+..
T Consensus 7 ~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~ 68 (258)
T PRK08628 7 DKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDA 68 (258)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHH
Confidence 557776665 577888887654 25888888888776 444555555666788889988754
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.68 E-value=16 Score=32.64 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=42.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCCh-hHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNL-SRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~-~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.| |+|+.+.++++.+. .+|+.++.+. ..++.+.+.++..+..+..+..|..+..
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 71 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKA 71 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 55777665 56678888887543 5899999865 4566666667666656777888987653
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.34 E-value=21 Score=33.00 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHH-cCCceEEEecCccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKR-LNLKATLILSDISKIN 193 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~-~g~~v~~~~~D~~~~~ 193 (329)
..+.++|=-||.. |++..+|+.+. ..++-+-.+.+++..+.+.++. .|+.+.++..|..+..
T Consensus 4 ~~~~~~lITGASs-GIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~ 69 (265)
T COG0300 4 MKGKTALITGASS-GIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPE 69 (265)
T ss_pred CCCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChh
Confidence 3466777777655 57777776543 5999999999999999999886 4677999999988764
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=81.33 E-value=12 Score=35.78 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=14.8
Q ss_pred CeEEeecCCCchHHHHHHH
Q psy15212 134 MYVLDACSAPGGKTCHLLE 152 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~ 152 (329)
-+|.|+||+.|..|+.+..
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp EEEEEES--SSHHHHHHHH
T ss_pred eEEEecCCCCCccHHHHHH
Confidence 4799999999999988765
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=25 Score=31.05 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|-.|+ +|+.+.++++.+ +..|+.+. .++...+...+.++..+.++.++..|..+..
T Consensus 6 ~~~~lItG~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 69 (247)
T PRK12935 6 GKVAIVTGG-AKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVE 69 (247)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 568888884 688888888754 35776654 3555665555555555656788889988754
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.27 E-value=12 Score=34.14 Aligned_cols=53 Identities=6% Similarity=-0.022 Sum_probs=37.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
+..||=.|| +|+.+.++++.+. .+|++++.++..++.+.. .+ ++++..|..+.
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~--~~~~~~Dl~d~ 59 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG--LEAFQLDYAEP 59 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC--ceEEEccCCCH
Confidence 556776665 6788888876543 699999999887765543 23 56677888764
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=16 Score=33.07 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=38.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..||=.| |+|+.+.++++.+ +.+|++++.++..++.+.+.. +-.+.++..|+.+..
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~ 62 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---GDRLLPLALDVTDRA 62 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---cCCeeEEEccCCCHH
Confidence 34677776 4678888887654 258999999888776554432 223667788887643
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=80.99 E-value=33 Score=32.25 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=41.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCcc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDIS 190 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~ 190 (329)
.|..+|=.|| +||.+.++|..+ |.+|+.++.++++++.+.+.++.. +..+..+..|..
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3677887775 556777777654 358999999999999888777653 234666677765
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.59 E-value=14 Score=34.81 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=31.0
Q ss_pred hcCCCCCCeEEeecCC-CchHHHHHHHhCCC-EEEEEeCChhHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSA-PGGKTCHLLEIADI-KLISVDNNLSRLNMIS 172 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag-~G~kt~~la~~~~~-~v~avD~~~~rl~~l~ 172 (329)
...+++|++||=.++| .|..+.++|+..+. .|++++.++++.+.++
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 3456788888777542 23334455666665 8999999999887664
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=25 Score=31.31 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCeEEeecCCC-chHHHHHHHhCC---CEEEEEeCC------------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAP-GGKTCHLLEIAD---IKLISVDNN------------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~-G~kt~~la~~~~---~~v~avD~~------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..||=.|++. |+.+.++++.+. ..|+.++.+ ..... +...+...+..+.++..|..+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHH
Confidence 56788888875 788888876543 588888876 22222 44445555656788889987743
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=80.37 E-value=14 Score=33.70 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=34.8
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++|+.||=.++ +-|..+.++|+..+.+|+++..++.+.+.+. .+|+.
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~----~~g~~ 189 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK----ELGAD 189 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hcCCc
Confidence 3677888887765 4566667777777788999998887765553 35653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.34 E-value=18 Score=32.32 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|..+|=.|+ +|+.+.++++.+ +.+|+++|.+.. ..+.+.+...+..+..+..|..+.
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~ 69 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKI 69 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCH
Confidence 556776664 677888888754 368888887543 333444555555577788888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 329 | ||||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 2e-51 | ||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 4e-23 | ||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 2e-21 | ||
| 2frx_A | 479 | Crystal Structure Of Yebu, A M5c Rna Methyltransfer | 1e-14 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 4e-14 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 3e-13 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 3e-13 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 8e-13 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 3e-12 | ||
| 2b9e_A | 309 | Human Nsun5 Protein Length = 309 | 2e-06 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 3e-06 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 3e-06 |
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-115
Identities = 112/336 (33%), Positives = 194/336 (57%), Gaps = 32/336 (9%)
Query: 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKP 60
+IN +LR+F R++ E+ + ++ + +P W + +++ YP QW++I++ +++P
Sbjct: 117 LINGVLRQFQRQQEELLAEFNAS--DARYLHPSWLLKRLQKAYPE--QWQSIVEANNQRP 172
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSIQD 118
P+ LRIN+ + S+ LL ++G++ P A++L TP + +P F +G+ ++QD
Sbjct: 173 PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQD 232
Query: 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKR 177
A+AQ L ++G ++LD C+APGGKT H+LE+A + ++++VD + RL+ + +NLKR
Sbjct: 233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR 292
Query: 178 LNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237
L +KAT+ D + ++ + FDRIL D PC+ +GV+RR+PD
Sbjct: 293 LGMKATVKQGDGRYPS----------------QWCGEQQFDRILLDAPCSATGVIRRHPD 336
Query: 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS 297
I WLRR DI +L++ +IL+ +W LK GG L++ TCS+ EE+ Q F + D+
Sbjct: 337 IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA 396
Query: 298 IRLNSPG------QLLPTVNKKQDYDGFFYSLFQKR 327
+ Q LP ++ DGFFY+ K+
Sbjct: 397 ELCETGTPEQPGKQNLPG---AEEGDGFFYAKLIKK 429
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 289 bits (743), Expect = 9e-96
Identities = 85/343 (24%), Positives = 155/343 (45%), Gaps = 34/343 (9%)
Query: 2 INAILREFLRKKGEIFKSKMYNIHESYWNY--PIWWINQVKITYPNFFQW-KNILDVGHK 58
+ + L K E + + E W Y P W I +VK + + V +
Sbjct: 126 VGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIERVKGILGD--ETEDFFRSVNKR 183
Query: 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCSI 116
+++R+N K + L++ G+E P +K+ P + F G +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISEN 174
Q+ A+ +A+ +LD + G V+D +APGGKT HL E+ K + + D + R+ + +
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 175 LKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
+KR+ +K ++ D K + D++L D PCT SG +
Sbjct: 304 VKRMGIKIVKPLVKDARKAP----------------EIIGEEVADKVLLDAPCTSSGTIG 347
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293
+NP++ W R++ I ++S+ ++L + +++KPGG+LL+ TCS++ EE+E+ F
Sbjct: 348 KNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407
Query: 294 HKDSIRLNSPGQLLPTVNK--------KQDYDGFFYSLFQKRK 328
H + + P + + GFFY+L +K K
Sbjct: 408 HPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKSK 450
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 9e-62
Identities = 81/325 (24%), Positives = 127/325 (39%), Gaps = 49/325 (15%)
Query: 28 YWNYPIW----WINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKS 83
Y + + K P R+N K ++ K L K
Sbjct: 13 RLGYSKLFADRYFQLWGERAIRIAEAME------KPLPRCFRVNTLKISVQDLVKRLNKK 66
Query: 84 GLETTII--GPLAIKL-HTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDAC 140
G + + L P SI+ P+F G IQ+A++ LD + G V D
Sbjct: 67 GFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMA 126
Query: 141 SAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198
+APGGKT +L ++ + + D + +RL NL RL + ++ S ++ +L
Sbjct: 127 AAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL-HIGEL- 184
Query: 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258
N FD+IL D PCTGSG + +NP+ W R +DIK ++L
Sbjct: 185 ---------------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLL 229
Query: 259 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK---DSIRLNSPG-------QLLP 308
++LKPGG L++ TCSL EE+E N ++ P +L
Sbjct: 230 EKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSE 289
Query: 309 TVNK-------KQDYDGFFYSLFQK 326
+ + GFF + +K
Sbjct: 290 EIKNARRLYPDVHETSGFFIAKIRK 314
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 2e-60
Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 54/309 (17%)
Query: 60 PPLTLRINQRKTTLISYNKLLKKSGLETTIIG--------------------PLAIKLHT 99
P +R+N KT K+ G P +
Sbjct: 10 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPA 69
Query: 100 PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IK 157
+ + P + G +QD A+ L A LLD G +V+DAC+APG KT HL + K
Sbjct: 70 QTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGK 129
Query: 158 LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYF 217
+ + D + RL ++ L R + + D + Y
Sbjct: 130 IFAFDLDAKRLASMATLLARAGVS-----------CCELAEED-FLAVSPSDPRYHE--V 175
Query: 218 DRILADLPCTGSGVVRRNPDIPWLRRKNDIK--KLSKYSCKILNNLWKMLKPGGKLLFVT 275
IL D C+GSG+ R + P + ++ L+ + + L + +L++ T
Sbjct: 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYST 234
Query: 276 CSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN---------------KKQDYDGFF 320
CSL EE+E+ + + + RL P + GFF
Sbjct: 235 CSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFF 294
Query: 321 YSLFQKRKE 329
++ ++ +
Sbjct: 295 VAVIERVEV 303
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 2e-60
Identities = 69/291 (23%), Positives = 131/291 (45%), Gaps = 34/291 (11%)
Query: 52 ILDVGHKKPPLTLRINQRKTTLISYNKLLKKSG--LETTIIGPLAIKLHTPISISKIPKF 109
++ V + +R+N K K L+ G LE T + +P SI P++
Sbjct: 1 MMIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEY 60
Query: 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSR 167
G+ Q ++ + +L+ R ++LD C+APGGKT HL ++ K +++V+ + +R
Sbjct: 61 LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTR 120
Query: 168 LNMISENLKRLNLKATLILS-DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPC 226
+ N+ R+ + T+I++ D+ K + +FD+IL D PC
Sbjct: 121 TKALKSNINRMGVLNTIIINADMRKY--------------KDYLLKNEIFFDKILLDAPC 166
Query: 227 TGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286
+G+ + +N ++ + DIK S ++++ +LK G+L++ TCS+ EE+EE
Sbjct: 167 SGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEV 222
Query: 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDY-----------DGFFYSLFQK 326
+ D + +N K+ Y + FF + +K
Sbjct: 223 IKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPPNEPFFIAKLRK 273
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 4e-58
Identities = 67/331 (20%), Positives = 139/331 (41%), Gaps = 46/331 (13%)
Query: 25 HESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSG 84
+ + +P ++ Q++ P+ + + L + ++R+N K ++ + +L G
Sbjct: 3 QHTVY-FPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYG 61
Query: 85 LETTIIG--PLAIKL----HTPISISKIPKFFNGFCSIQDAAAQLAAPLL--DIRSGMYV 136
T I + + + + +G IQ+A++ L L D + V
Sbjct: 62 WTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRV 121
Query: 137 LDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194
+D +APG KT + + + +++ + + SR+ ++ N+ R + +
Sbjct: 122 MDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVAL--------- 172
Query: 195 KKLYIDINKKTNN---RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 251
T+ F + FD IL D PC+G GVVR++PD ++++
Sbjct: 173 ----------THFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIA 222
Query: 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN 311
+++++ + L+PGG L++ TC+L EE+E + + + D++ G L P N
Sbjct: 223 ATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGAN 282
Query: 312 K-------------KQDYDGFFYSLFQKRKE 329
K D +GFF + +K +
Sbjct: 283 KALTEEGFLHVFPQIYDCEGFFVARLRKTQA 313
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 7e-53
Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 53/326 (16%)
Query: 30 NYPIW----WINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGL 85
P + + +FF + R N K + + L
Sbjct: 7 TLPQQFIKKYRLLLGEEASDFF-----SALEQGSVKKGFRWNPLKPAGLDMVQTYHSEEL 61
Query: 86 ETTIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGG 145
+ K G+ Q+ +A + + G VLD C+APGG
Sbjct: 62 QPAPYSNEGFLGTVN---GKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGG 118
Query: 146 KTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203
K+ L K L++ + R ++SEN++R + ++
Sbjct: 119 KSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIV------------------ 160
Query: 204 KTNN---RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260
TN+ + + +FDRI+ D PC+G G+ R++P+ + K +IL++
Sbjct: 161 -TNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSS 219
Query: 261 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLL----------PTV 310
KMLK G+L++ TC+ EE+EE +N+ +I Q + +
Sbjct: 220 AIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGL 279
Query: 311 NK-------KQDYDGFFYSLFQKRKE 329
K K +G F + +
Sbjct: 280 EKTIRIWPHKDQGEGHFVAKLTFHGQ 305
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-52
Identities = 70/296 (23%), Positives = 112/296 (37%), Gaps = 49/296 (16%)
Query: 58 KKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG--PLAIKLHTPISISKIPKFFNGFCS 115
K LR+N K + S I P F+ G
Sbjct: 28 GKRTYGLRVNTLKLPP---EAFQRISPWPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISE 173
IQ+ +AQ LLD + G VLD +APGGKT HL K L++ + + R+ + E
Sbjct: 85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNK---YFDRILADLPCTGSG 230
N++R T R YF R+L D PC+G G
Sbjct: 145 NVERWGAP--------------------LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEG 184
Query: 231 VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
+ R++ + + K++++ +L ++L PGG L++ TC+ EE+E F
Sbjct: 185 MFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHF 244
Query: 291 SKNHKD----SIRLNSPG--------QLLPTVNK-------KQDYDGFFYSLFQKR 327
K H + RL+ + P + K + + +G F + F+K
Sbjct: 245 LKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGEGHFLARFRKE 300
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-05
Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 36/193 (18%)
Query: 101 ISISKIPKFFNGFCSIQD--------AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLE 152
I++SK+ F N ++ + A L G V D + G + L
Sbjct: 10 IALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL 69
Query: 153 IADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212
+ ++I V+ + ++++ ENL K + + D+S+ N +
Sbjct: 70 LGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR----------------- 112
Query: 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI----LNNLWKMLKPG 268
D ++ + P G R++ D P+L + +I + + K
Sbjct: 113 ----VDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEH 165
Query: 269 GKLLFVTCSLWFE 281
G ++ + E
Sbjct: 166 GFVVTHRLTTKIE 178
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 20/176 (11%), Positives = 47/176 (26%), Gaps = 39/176 (22%)
Query: 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182
+ VLD + + K ++ + +L + N K
Sbjct: 14 FLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL 73
Query: 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLR 242
+ DI K+ +K++ + G+ R D+
Sbjct: 74 NISKGDIRKLP------------------FKDESMSFVY----SYGTIFHMRKNDVK--- 108
Query: 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSI 298
+ ++ + ++LKPGG + +E + + +
Sbjct: 109 -------------EAIDEIKRVLKPGGLACINFLT-TKDERYNKGEKIGEGEFLQL 150
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-05
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 27/164 (16%)
Query: 126 PLLDIRSGMYVLDACSAPGGKTCHLLEI--ADIKLISVDNNLSRLNMISENLKRLNLKAT 183
P G VLD G ++ K+I VD + + K + A
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN---QLEVARKYVEYHAE 133
Query: 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRR 243
S+ N++ L I + D +++ + V + +
Sbjct: 134 KFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS------NCVCNLSTNKL---- 183
Query: 244 KNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287
+ + ++L+ GG+L F SE
Sbjct: 184 ------------ALFKEIHRVLRDGGELYFSDVYADRRLSEAAQ 215
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 43/154 (27%)
Query: 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLKRLNLK-AT 183
++ GM VLD + G +L ++ K+ ++D +N E + +L LK
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRR 243
++ S+ +KI L + D I + +
Sbjct: 92 VLKSEENKIPLP------------------DNTVDFIFM------AFTFHELSEPL---- 123
Query: 244 KNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
K L L ++ KP L +
Sbjct: 124 ------------KFLEELKRVAKPFAYLAIIDWK 145
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 52/342 (15%), Positives = 105/342 (30%), Gaps = 91/342 (26%)
Query: 36 INQVKITYPNFFQWKN------ILD-VGHKKPPLTLR-INQRKTTLISYNKLLKKSGLET 87
I+ ++ + K +L V + K N L+ T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKILL------------T 271
Query: 88 T----IIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAP 143
T + L+ T IS+ D L LD R +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRPQDLPREVL--- 323
Query: 144 GGKTCHLLEIADIKLI--SVDNNLSRLNMISENLKRLNLKA--TLILSDISKIN---LKK 196
T + ++ +I S+ + L+ +N K +N T+I S ++ + +K
Sbjct: 324 ---TTNPRRLS---IIAESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 197 LY---------IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD-----IPWLR 242
++ I + F K ++ + +V + P IP +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIY 432
Query: 243 RKNDIKKLSKYSC--KILN--NLWKMLKPGGKLLFVTCSLWFE---------ESEEQAII 289
+ +K ++Y+ I++ N+ K + ++ E E+ +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 290 FS-----------KNHKDSIRLNSPGQLLPTVNKKQDYDGFF 320
F K DS N+ G +L T+ + + Y +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 31/162 (19%)
Query: 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDI 189
+R G VLD S GG ++VD +L L ++ + RL L+ + +
Sbjct: 212 VRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEA 270
Query: 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249
R + F +L D P ++R ++
Sbjct: 271 LPT----------------LRGLEGP-FHHVLLDPP-------------TLVKRPEELPA 300
Query: 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFS 291
+ ++ ++ ++L G L +CS + +
Sbjct: 301 MKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARR 342
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 9e-04
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 43/175 (24%)
Query: 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177
+ + + + ++ + D GG+T L ++ +D +++ + N ++
Sbjct: 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQ 91
Query: 178 LNL--KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
L + T I+ + + ++N+ D I + G + N
Sbjct: 92 SGLQNRVTGIVGSMDDLP------------------FRNEELDLIWS------EGAI-YN 126
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290
+ LN K LK GG L CS + +E + F
Sbjct: 127 IGFE----------------RGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDF 165
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.84 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.77 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.77 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.76 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.75 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.75 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.74 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.74 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.74 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.73 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.72 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.71 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.69 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.69 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.69 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.68 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.68 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.68 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.67 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.67 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.65 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.64 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.63 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.63 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.63 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.62 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.61 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.6 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.6 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.6 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.59 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.59 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.58 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.58 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.57 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.57 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.56 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.56 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.55 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.55 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.55 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.54 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.53 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.51 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.51 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.51 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.51 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.5 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.5 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.5 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.5 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.5 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.49 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.49 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.49 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.49 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.49 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.48 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.48 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.48 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.48 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.47 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.47 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.47 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.47 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.46 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.46 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.46 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.46 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.46 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.45 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.45 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.44 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.44 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.43 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.43 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.42 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.42 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.42 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.42 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.42 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.42 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.42 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.41 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.41 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.41 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.41 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.41 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.41 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.4 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.39 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.39 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.39 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.39 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.38 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.38 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.38 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.38 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.38 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.38 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.38 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.37 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.37 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.37 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.36 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.36 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.36 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.36 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.36 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.35 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.35 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.35 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.35 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.35 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.35 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.34 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.34 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.34 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.33 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.33 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.33 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.33 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.33 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.33 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.33 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.32 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.32 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.32 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.31 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.3 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.3 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.29 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.29 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.28 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.28 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.28 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.27 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.27 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.27 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.26 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.26 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.26 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.25 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.25 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.25 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.25 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.25 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.25 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.25 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.25 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.25 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.24 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.24 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.24 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.24 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.24 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.24 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.24 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.24 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.23 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.23 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.23 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.23 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.23 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.22 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.22 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.22 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.22 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.22 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.21 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.21 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.21 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.2 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.2 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.2 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.2 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.2 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.2 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.2 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.19 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.18 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.18 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.17 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.17 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.17 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.16 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.16 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.16 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.16 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.14 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.14 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.14 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.14 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.13 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.12 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.12 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.12 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.11 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.1 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.09 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.09 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.09 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.08 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.06 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.06 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.05 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.05 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.05 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.04 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.03 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.03 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.02 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.02 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.01 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.0 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.99 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.99 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.98 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.97 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.97 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.96 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.95 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.95 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.95 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.95 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.94 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.94 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.93 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.92 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.91 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.91 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.9 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.89 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.88 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.86 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.84 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.84 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.83 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.82 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.81 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.78 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.77 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.77 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.75 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.67 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.65 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.63 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.63 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.62 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.62 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.59 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.53 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.5 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.46 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.45 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.41 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.36 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.35 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.32 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.3 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.29 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.26 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.24 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.23 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.19 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.18 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 98.12 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.1 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 98.08 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.91 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.83 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.83 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.58 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.52 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.31 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.28 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 97.24 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.15 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 97.06 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.99 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.99 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.85 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.85 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.8 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.74 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.68 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.63 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.58 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.57 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.56 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.55 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.5 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.49 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.48 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.43 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.32 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.31 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.22 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.21 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.2 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.19 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.19 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.16 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.07 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 96.03 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.03 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.03 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.02 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.88 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.84 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.83 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.81 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.76 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.75 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.75 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.7 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.69 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 95.62 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.61 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 95.6 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.55 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.48 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.47 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.43 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.42 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.35 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 95.28 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.18 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.16 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.13 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.13 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 95.13 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.09 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.05 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.99 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.98 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.9 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.86 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.83 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.77 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.76 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.71 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.69 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 94.69 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 94.68 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.66 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.65 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.61 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.58 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.5 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.47 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 94.44 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 94.34 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.33 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 94.32 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.31 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.27 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 94.24 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 94.18 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 94.15 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 94.09 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 94.07 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.02 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 94.02 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.99 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.99 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 93.98 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 93.98 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.98 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 93.97 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 93.95 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 93.94 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 93.93 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 93.87 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 93.76 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.7 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 93.67 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.67 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 93.62 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 93.57 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.52 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 93.42 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.41 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 93.38 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 93.37 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.34 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 93.33 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 93.31 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 93.25 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.17 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 93.15 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.15 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 93.13 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 93.12 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 93.11 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.09 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 93.06 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 93.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 92.98 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 92.93 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 92.92 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 92.89 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 92.86 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 92.84 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 92.84 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 92.83 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 92.82 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 92.82 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.78 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 92.75 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.72 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 92.69 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 92.63 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.6 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 92.58 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 92.58 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.54 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 92.54 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.52 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 92.34 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 92.33 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 92.29 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 92.28 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 92.27 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 92.21 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 92.19 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 92.13 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 92.13 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.11 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 92.11 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 92.06 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 92.02 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 92.01 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 91.99 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.92 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 91.89 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.86 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 91.78 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.76 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 91.75 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 91.73 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.71 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.64 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 91.63 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 91.55 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 91.48 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 91.38 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 91.38 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 91.36 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 91.28 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 91.26 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 91.03 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 90.96 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.95 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.94 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 90.94 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 90.9 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 90.88 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 90.81 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.8 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 90.74 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 90.72 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 90.68 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 90.39 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 90.39 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 90.37 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 90.37 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 90.36 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 90.29 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 90.28 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 90.28 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 90.26 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.22 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 90.2 |
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=480.62 Aligned_cols=304 Identities=37% Similarity=0.673 Sum_probs=275.4
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLL 80 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l 80 (329)
|||||||++.|+.+.+..... .+++ +||+|.||+++|.+.||+ +++++++++++++|+++|||++|++++++.+.|
T Consensus 117 fvN~vL~~~~r~~~~~~~~~~-~~~~-~~~~p~w~~~~~~~~~g~--~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l 192 (429)
T 1sqg_A 117 LINGVLRQFQRQQEELLAEFN-ASDA-RYLHPSWLLKRLQKAYPE--QWQSIVEANNQRPPMWLRINRTHHSRDSWLALL 192 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TSGG-GGCSCHHHHHHHHHHCTT--THHHHHHHHTSCCCEEEEECTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHhhhcccccch-hhhh-hhcCcHHHHHHHHHHhhH--HHHHHHHhCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 699999999987655432221 2345 899999999999999996 789999999999999999999999999999999
Q ss_pred HHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CE
Q psy15212 81 KKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IK 157 (329)
Q Consensus 81 ~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~ 157 (329)
.+.|+...+ +.++++.+..+..+..++.|..|.+++||.+|++++.++++++|++|||+|||||++|.++++.++ ++
T Consensus 193 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~ 272 (429)
T 1sqg_A 193 DEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQ 272 (429)
T ss_dssp HHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCE
T ss_pred HhCCCceeecCCCCCEEEECCCCCcccChHHhCCCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCE
Confidence 999998765 467899998777889999999999999999999999999999999999999999999999999887 79
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCC
Q psy15212 158 LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD 237 (329)
Q Consensus 158 v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~ 237 (329)
|+|+|+++.+++.+++|++++|+.++++.+|+.... ..+.++.||+|++||||||+|+++++|+
T Consensus 273 v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~----------------~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~ 336 (429)
T 1sqg_A 273 VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS----------------QWCGEQQFDRILLDAPCSATGVIRRHPD 336 (429)
T ss_dssp EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH----------------HHHTTCCEEEEEEECCCCCGGGTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhch----------------hhcccCCCCEEEEeCCCCcccccCCCcc
Confidence 999999999999999999999998899999998764 2223468999999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecC------CCcccCCCC
Q psy15212 238 IPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS------PGQLLPTVN 311 (329)
Q Consensus 238 ~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~------~~~~~p~~~ 311 (329)
++|.++++++..+...|.++|++++++|||||+|||||||++++|||++|.+++++|+++++++. ..+++|+.
T Consensus 337 ~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~- 415 (429)
T 1sqg_A 337 IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA- 415 (429)
T ss_dssp HHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECSSBCSSSBSEEECCCT-
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeCCCCCCCCeEEECCCC-
Confidence 99999999999999999999999999999999999999999999999999999999999998761 13689988
Q ss_pred CCCCCCeEEEEEEEec
Q psy15212 312 KKQDYDGFFYSLFQKR 327 (329)
Q Consensus 312 ~~~~~~gff~a~l~k~ 327 (329)
+++||||+|+|+|.
T Consensus 416 --~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 416 --EEGDGFFYAKLIKK 429 (429)
T ss_dssp --TSCCSEEEEEEEC-
T ss_pred --CCCCceEEEEEEEC
Confidence 89999999999984
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-62 Score=482.52 Aligned_cols=305 Identities=27% Similarity=0.451 Sum_probs=274.5
Q ss_pred CeeeecchhhhcccccccccccCCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhC-CCCCeeEEEcCCCCCHHHHHHH
Q psy15212 1 MINAILREFLRKKGEIFKSKMYNIHESYWNYPIWWINQVKITYPNFFQWKNILDVGH-KKPPLTLRINQRKTTLISYNKL 79 (329)
Q Consensus 1 ~vNavlr~~~~~~~~~~~~~~~~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~-~~~p~~~RvN~~k~~~~~~~~~ 79 (329)
|||||||++.|++..+.+.. ..++++||+|.||+++|.+.||+ ++++++++++ +++|+++|||++|++++++.+.
T Consensus 129 fvNgvL~~~~r~~~~~~~~~--~~~~~~~~~P~w~~~~~~~~~g~--~~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~ 204 (450)
T 2yxl_A 129 YFWDLLDKIFEYKPNPKNEL--EELEWKYLAPSWLIERVKGILGD--ETEDFFRSVNKRHEWISIRVNTLKANVEEVIGE 204 (450)
T ss_dssp HHHHHHHHHHTCCCCCCSHH--HHHHHHHTSCHHHHHHHHHHHGG--GHHHHHHHHHCCCCEEEEEECTTTCCHHHHHHH
T ss_pred chHHHHHHHhhccccccchh--hhhhhHhcCcHHHHHHHHHHhhH--HHHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHH
Confidence 69999999998752221111 34678899999999999999995 8999999999 9999999999999999999999
Q ss_pred HHHCCCeeEE--eCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--
Q psy15212 80 LKKSGLETTI--IGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-- 155 (329)
Q Consensus 80 l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-- 155 (329)
|+++|+...+ +.++++.+.....+..++.|.+|.+++||.+|++++.++++++|++|||+|||||++|.++++.++
T Consensus 205 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~ 284 (450)
T 2yxl_A 205 LEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNK 284 (450)
T ss_dssp HHHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTC
T ss_pred HHhCCccceecCccCceEEeCCCCCcccCchhhCceEEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCC
Confidence 9999998765 567899986656789999999999999999999999999999999999999999999999999875
Q ss_pred CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc
Q psy15212 156 IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 156 ~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
++|+|+|+++.+++.+++|++++|+. ++++.+|+..+. ..+.++.||+|++||||||+|++++
T Consensus 285 ~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~----------------~~~~~~~fD~Vl~D~Pcsg~g~~~~ 348 (450)
T 2yxl_A 285 GKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP----------------EIIGEEVADKVLLDAPCTSSGTIGK 348 (450)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS----------------SSSCSSCEEEEEEECCCCCGGGTTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc----------------hhhccCCCCEEEEcCCCCCCeeecc
Confidence 69999999999999999999999995 899999998764 2123368999999999999999999
Q ss_pred CCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC-----------
Q psy15212 235 NPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------- 303 (329)
Q Consensus 235 ~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~----------- 303 (329)
+|+++|.++++++..+...|.++|+++.++|||||+|+|+|||++++|||++|.+|+++|+++++++..
T Consensus 349 ~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~ 428 (450)
T 2yxl_A 349 NPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGT 428 (450)
T ss_dssp STTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCCCSSSEECSSTTC
T ss_pred ChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeecccccccccCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 ~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+. +++||||+|+|+|++
T Consensus 429 ~~~~P~~---~~~dGff~a~l~k~~ 450 (450)
T 2yxl_A 429 MRAWPHR---HSTIGFFYALLEKSK 450 (450)
T ss_dssp EEECHHH---HSSCCEEEEEEECC-
T ss_pred EEECCCC---CCCCceEEEEEEECC
Confidence 2578887 899999999999964
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=441.20 Aligned_cols=281 Identities=31% Similarity=0.424 Sum_probs=248.7
Q ss_pred CCchhhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEe--CCceEEEcC-
Q psy15212 23 NIHESYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHT- 99 (329)
Q Consensus 23 ~~~~~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~- 99 (329)
..++++||+|.||+++|.+.||+ +++++++++++++|+++|||++|++++++.+.|++.|+...+. .++++.+..
T Consensus 8 ~~l~~~~~~P~w~~~~~~~~~g~--~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~ 85 (315)
T 1ixk_A 8 LDKLLRLGYSKLFADRYFQLWGE--RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTRE 85 (315)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHTT--HHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEEC
T ss_pred HHHHHHhCCcHHHHHHHHHHccH--HHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCC
Confidence 35788999999999999999996 8999999999999999999999999999999999999987664 467888753
Q ss_pred CCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHH
Q psy15212 100 PISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 100 ~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~ 177 (329)
+..+..++.|.+|++++||.+|++++.++++++|++|||+|||||++|.++++.++ ++|+|+|+++.+++.+++|+++
T Consensus 86 ~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~ 165 (315)
T 1ixk_A 86 PFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR 165 (315)
T ss_dssp SSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999874 7999999999999999999999
Q ss_pred cCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHH
Q psy15212 178 LNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCK 256 (329)
Q Consensus 178 ~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~ 256 (329)
+|+. ++++++|+..+. . ..+.||+|++||||||+|+++++|+++|.++.+++..+...|.+
T Consensus 166 ~g~~~v~~~~~D~~~~~----------------~--~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~ 227 (315)
T 1ixk_A 166 LGVLNVILFHSSSLHIG----------------E--LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMR 227 (315)
T ss_dssp HTCCSEEEESSCGGGGG----------------G--GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHH
T ss_pred hCCCeEEEEECChhhcc----------------c--ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHH
Confidence 9995 899999998765 1 24579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC---------------------CcccCCCCCCCC
Q psy15212 257 ILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------------------GQLLPTVNKKQD 315 (329)
Q Consensus 257 lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------------------~~~~p~~~~~~~ 315 (329)
+|++++++|||||+|+|||||++++|||++|+++++++ +++.++.+ .+++|+. ++
T Consensus 228 ~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~ 303 (315)
T 1ixk_A 228 LLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF-DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDV---HE 303 (315)
T ss_dssp HHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS-SEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTT---SS
T ss_pred HHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcC-CCEEecCCccccCcccccccccccccCCEEEECCCC---CC
Confidence 99999999999999999999999999999999999987 57766543 1467887 89
Q ss_pred CCeEEEEEEEec
Q psy15212 316 YDGFFYSLFQKR 327 (329)
Q Consensus 316 ~~gff~a~l~k~ 327 (329)
+||||+|+|+|.
T Consensus 304 ~dGfF~A~l~k~ 315 (315)
T 1ixk_A 304 TSGFFIAKIRKL 315 (315)
T ss_dssp SCSEEEEEEEEC
T ss_pred cccEEEEEEEEC
Confidence 999999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-60 Score=462.88 Aligned_cols=276 Identities=24% Similarity=0.351 Sum_probs=250.9
Q ss_pred CCcHHHHHHHHHhCCChHHHHHHHHHhCCC-CCeeEEEcCCCCCHHHHHHHHHHCCCeeEEeCCceEEEcCCCCCCCCcc
Q psy15212 30 NYPIWWINQVKITYPNFFQWKNILDVGHKK-PPLTLRINQRKTTLISYNKLLKKSGLETTIIGPLAIKLHTPISISKIPK 108 (329)
Q Consensus 30 s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~-~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 108 (329)
.+|.||+++|.+.||+ ++++++++++++ +|+++|||++|++++++.+.| .......+++++++++.....+..+++
T Consensus 1 ~lP~w~~~~~~~~~g~--e~~~~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l-~~~~~~~~~~~~g~~l~~~~~~~~~~~ 77 (464)
T 3m6w_A 1 MLPKAFLSRMAELLGE--EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRIS-PWPLRPIPWCQEGFYYPEEARPGPHPF 77 (464)
T ss_dssp CCCHHHHHHHHHHHGG--GHHHHHHHHHTSCCCCEEEECTTTCCHHHHHHHC-SSCCEEETTEEEEEECCTTCCCSSSHH
T ss_pred CCcHHHHHHHHHHHHH--HHHHHHHHcCCCCCCeEEEEcCCCCCHHHHHHHc-CCCceecCCCCceEEECCCCCcccChH
Confidence 3899999999999997 799999999999 999999999999999998777 222334456678999886666889999
Q ss_pred cccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEe
Q psy15212 109 FFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLIL 186 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~ 186 (329)
|.+|.+++||++|++++.++++++|++|||+|||||++|+++|++++ ++|+|+|+++.+++.+++|++++|+.+.+++
T Consensus 78 ~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~ 157 (464)
T 3m6w_A 78 FYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQ 157 (464)
T ss_dssp HHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEEC
T ss_pred HhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEE
Confidence 99999999999999999999999999999999999999999999876 7999999999999999999999999888999
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 266 (329)
+|+..+. .. ..+.||+|++||||||+|+++++|++.|.++++++..+...|.++|++|+++||
T Consensus 158 ~Da~~l~----------------~~-~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk 220 (464)
T 3m6w_A 158 APPRALA----------------EA-FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG 220 (464)
T ss_dssp SCHHHHH----------------HH-HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCHHHhh----------------hh-ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9988764 11 246899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC----------------------CcccCCCCCCCCCCeEEEEEE
Q psy15212 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP----------------------GQLLPTVNKKQDYDGFFYSLF 324 (329)
Q Consensus 267 pgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~----------------------~~~~p~~~~~~~~~gff~a~l 324 (329)
|||+|||||||++++|||++|++|+++|+++++++.. .+++|+. +++||||+|+|
T Consensus 221 pGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfF~A~l 297 (464)
T 3m6w_A 221 PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHR---LEGEGHFLARF 297 (464)
T ss_dssp EEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEECCCCSTTSEECCGGGTTTCGGGGGSEEECTTT---SSSSCEEEEEE
T ss_pred CCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEecccccccccCcccccccccccCCeEEECCCC---CCceeEEEEEE
Confidence 9999999999999999999999999999999887752 1578887 89999999999
Q ss_pred EecC
Q psy15212 325 QKRK 328 (329)
Q Consensus 325 ~k~~ 328 (329)
+|.+
T Consensus 298 ~k~~ 301 (464)
T 3m6w_A 298 RKEG 301 (464)
T ss_dssp EECS
T ss_pred EECC
Confidence 9974
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-59 Score=458.31 Aligned_cols=280 Identities=22% Similarity=0.382 Sum_probs=247.2
Q ss_pred hcCCcHHHHHHHHHhCCChH-HHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEE--eCCceEEEcCC----
Q psy15212 28 YWNYPIWWINQVKITYPNFF-QWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTI--IGPLAIKLHTP---- 100 (329)
Q Consensus 28 ~~s~P~w~~~~~~~~~~~~~-~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~---- 100 (329)
.|++|.||+++|.+.||+ + +++++++++++++|+++|||++|++++++.+.|.+.|+...+ ++++++.+...
T Consensus 5 ~~~~P~~~~~~~~~~~g~-~~~~~~~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
T 2frx_A 5 TVYFPDAFLTQMREAMPS-TLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDA 83 (479)
T ss_dssp --CCCHHHHHHHGGGCC-----CHHHHHHHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC--------
T ss_pred cccCcHHHHHHHHHHcCc-cHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecCcccc
Confidence 478999999999999997 4 578999999999999999999999999999999999987655 45678877532
Q ss_pred CCCCCCcccccceEEEechhHHHHhhhcCCC--CCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHH
Q psy15212 101 ISISKIPKFFNGFCSIQDAAAQLAAPLLDIR--SGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 101 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~--~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~ 176 (329)
..+..+++|..|.+++||++||+++.+++++ +|++|||+|||||+||+++|++++ +.|+|+|+++.|++.+++|++
T Consensus 84 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~ 163 (479)
T 2frx_A 84 LPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANIS 163 (479)
T ss_dssp -CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHH
T ss_pred cCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 2678899999999999999999999999988 999999999999999999999875 799999999999999999999
Q ss_pred HcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH
Q psy15212 177 RLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255 (329)
Q Consensus 177 ~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 255 (329)
++|+. +.++++|+..+. .. ..+.||+|++||||||+|+++++|++.|.|+++++..+...|.
T Consensus 164 r~g~~nv~~~~~D~~~~~----------------~~-~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~ 226 (479)
T 2frx_A 164 RCGISNVALTHFDGRVFG----------------AA-VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQR 226 (479)
T ss_dssp HHTCCSEEEECCCSTTHH----------------HH-STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHH
T ss_pred HcCCCcEEEEeCCHHHhh----------------hh-ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHH
Confidence 99996 899999998764 11 2468999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCc-EEecCC---------------CcccCCCCCCCCCCeE
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDS-IRLNSP---------------GQLLPTVNKKQDYDGF 319 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~-~~~~~~---------------~~~~p~~~~~~~~~gf 319 (329)
++|++|+++|||||+|||||||++++|||++|++++++++++ .+++.. .+++|+. +++|||
T Consensus 227 ~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r~~P~~---~~~dGf 303 (479)
T 2frx_A 227 ELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANKALTEEGFLHVFPQI---YDCEGF 303 (479)
T ss_dssp HHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTTEEECCCTTSSTTGGGGBCTTSCEEECTTT---TTSCCE
T ss_pred HHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCceecccccccccccccccccCCeEEECCCC---CCcCcc
Confidence 999999999999999999999999999999999999999986 443321 1568887 899999
Q ss_pred EEEEEEecC
Q psy15212 320 FYSLFQKRK 328 (329)
Q Consensus 320 f~a~l~k~~ 328 (329)
|+|+|+|.+
T Consensus 304 F~A~l~k~~ 312 (479)
T 2frx_A 304 FVARLRKTQ 312 (479)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEEcC
Confidence 999999975
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=458.42 Aligned_cols=271 Identities=22% Similarity=0.288 Sum_probs=242.8
Q ss_pred cCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCC-eeEEEcCCCCCHHHHHHHHHHCCCe---eEEeCCceEEEcCCCCCC
Q psy15212 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPP-LTLRINQRKTTLISYNKLLKKSGLE---TTIIGPLAIKLHTPISIS 104 (329)
Q Consensus 29 ~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p-~~~RvN~~k~~~~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~~~ 104 (329)
+++|.||+++|.+.||+ +++++++++++++| +++|||++|+ +++.+.+ ...++ ..++++++++ . ..+.
T Consensus 6 ~~~P~w~~~~~~~~~g~--e~~~~~~a~~~~~~~~~lRvN~lk~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~--~~~~ 77 (456)
T 3m4x_A 6 TTLPQQFIKKYRLLLGE--EASDFFSALEQGSVKKGFRWNPLKP--AGLDMVQ-TYHSEELQPAPYSNEGFL-G--TVNG 77 (456)
T ss_dssp -CCCHHHHHHHHHHHGG--GHHHHHHHHHHCCCCCEEECCTTST--THHHHHH-HHTCSSCCBCTTCTTEEE-S--CCCT
T ss_pred hhChHHHHHHHHHHhCH--HHHHHHHHcCCCCCCcEEEEcCccH--HHHHHhc-CCcccccCCCCCCcceEE-c--CCCC
Confidence 68999999999999997 69999999999999 9999999998 6665543 22333 5567788888 3 2358
Q ss_pred CCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 105 KIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
.+++|.+|.+++||++||+++.++++++|++|||+|||||+||+++|++++ ++|+|+|+++.+++.+++|++++|+.
T Consensus 78 ~~~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n 157 (456)
T 3m4x_A 78 KSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN 157 (456)
T ss_dssp TSHHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS
T ss_pred CChHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 899999999999999999999999999999999999999999999999865 79999999999999999999999997
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
+.++++|+..+. .. .++.||+||+||||||+|+++++|+++|.++.+++..+...|+++|++|
T Consensus 158 v~v~~~Da~~l~----------------~~-~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a 220 (456)
T 3m4x_A 158 AIVTNHAPAELV----------------PH-FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSA 220 (456)
T ss_dssp EEEECCCHHHHH----------------HH-HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCHHHhh----------------hh-ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHH
Confidence 889999988764 11 2468999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC---------------------CcccCCCCCCCCCCeEE
Q psy15212 262 WKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------------------GQLLPTVNKKQDYDGFF 320 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------------------~~~~p~~~~~~~~~gff 320 (329)
+++|||||+|||||||++++|||++|++|+++|+ +++++.+ .+++|+. +++||||
T Consensus 221 ~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGFF 296 (456)
T 3m4x_A 221 IKMLKNKGQLIYSTCTFAPEENEEIISWLVENYP-VTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHK---DQGEGHF 296 (456)
T ss_dssp HHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS-EEEECCCCSSCCEECCGGGSSSTTGGGSEEECTTT---SSSSCEE
T ss_pred HHhcCCCcEEEEEEeecccccCHHHHHHHHHhCC-CEEEeccccccccccccccccccccCCeEEECCCC---CCCcCeE
Confidence 9999999999999999999999999999999998 8887642 1578887 8999999
Q ss_pred EEEEEecC
Q psy15212 321 YSLFQKRK 328 (329)
Q Consensus 321 ~a~l~k~~ 328 (329)
+|+|+|.+
T Consensus 297 ~A~l~k~~ 304 (456)
T 3m4x_A 297 VAKLTFHG 304 (456)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 99999974
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-55 Score=411.53 Aligned_cols=252 Identities=24% Similarity=0.308 Sum_probs=207.5
Q ss_pred CCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEe--------------------CCceEEEcCCCCCCCCcccccceEEE
Q psy15212 57 HKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--------------------GPLAIKLHTPISISKIPKFFNGFCSI 116 (329)
Q Consensus 57 ~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~G~~~~ 116 (329)
..++|+++|||++|++++++.+.|+++|+...+. .++++.++....+..+++|++|.+++
T Consensus 7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~ 86 (309)
T 2b9e_A 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLIL 86 (309)
T ss_dssp --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEE
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEE
Confidence 4578999999999999999999999999987653 24567776666789999999999999
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
||++||+++.++++++|++|||+|||||+||+++|++++ ++|+|+|+++.+++.+++|++++|+. ++++.+|+..+.
T Consensus 87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~ 166 (309)
T 2b9e_A 87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS 166 (309)
T ss_dssp CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC
Confidence 999999999999999999999999999999999999864 79999999999999999999999986 899999988764
Q ss_pred hhhhhhhhcccccccccccC-CCCCCEEEEccCCccccccccCCCCcccC--ChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 194 LKKLYIDINKKTNNRFRFYK-NKYFDRILADLPCTGSGVVRRNPDIPWLR--RKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~--~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
.... ...||+||+||||||+|+++++|+++|.+ +++++..+...|.++|++|+++++ ||+
T Consensus 167 ----------------~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~ 229 (309)
T 2b9e_A 167 ----------------PSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQR 229 (309)
T ss_dssp ----------------TTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCE
T ss_pred ----------------ccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCE
Confidence 1000 14799999999999999999999998854 678899999999999999999987 999
Q ss_pred EEEEcCCCCccccHHHHHHHHhhCCC-cEEecCC-----------------CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 271 LLFVTCSLWFEESEEQAIIFSKNHKD-SIRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 271 lvysTCS~~~~Ene~vv~~~l~~~~~-~~~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
|||||||++++|||++|++||++|++ +++++.. .+++|+. +++||||+|+|+|.+
T Consensus 230 lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfF~A~l~k~~ 302 (309)
T 2b9e_A 230 LVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPET---TLSSGFFVAVIERVE 302 (309)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHH---HSSCSEEEEEEEEC-
T ss_pred EEEECCCCChHHhHHHHHHHHHhCCCcEEEeccccccccccccccCCCCCeEEECCCC---CCCCCeEEEEEEECC
Confidence 99999999999999999999999998 8876532 1356766 799999999999975
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-55 Score=415.04 Aligned_cols=272 Identities=20% Similarity=0.261 Sum_probs=226.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeE----------------Ee--------
Q psy15212 35 WINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT----------------II-------- 90 (329)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~----------------~~-------- 90 (329)
|.+++.+.||+ +|..+..+++.|++..+|+|+.+ +.+++.+.|+..|..-. ..
T Consensus 23 Fd~~Y~~~~G~--~W~~~r~aL~~~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 99 (359)
T 4fzv_A 23 FDMTYSVQFGD--LWPSIRVSLLSEQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWA 99 (359)
T ss_dssp HHHHHHHHHGG--GHHHHHHHHTSCCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHHHH
T ss_pred HHHHHHHHhhh--hhHHHHHHHcCcchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCccccc
Confidence 77788888997 99999999999999999999985 67888888888775420 00
Q ss_pred CCce--EEEcCCCCCCCCcccccc-----eEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEe
Q psy15212 91 GPLA--IKLHTPISISKIPKFFNG-----FCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVD 162 (329)
Q Consensus 91 ~~~~--~~~~~~~~~~~~~~~~~G-----~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD 162 (329)
.+.. +.+.....+..+|.|.+| .+|+||++||+++.+|+++||++|||+||||||||+|+|+++. +.|+|+|
T Consensus 100 ~~~~l~~~~~~~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D 179 (359)
T 4fzv_A 100 CSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAAND 179 (359)
T ss_dssp SCSSCCEEECCTTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEEC
T ss_pred CCccceEEecCCCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEc
Confidence 0001 222233456777777765 5889999999999999999999999999999999999999877 7999999
Q ss_pred CChhHHHHHHHHHHHcCC-------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccc--cccc
Q psy15212 163 NNLSRLNMISENLKRLNL-------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS--GVVR 233 (329)
Q Consensus 163 ~~~~rl~~l~~n~~~~g~-------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~--G~~~ 233 (329)
+++.|++.+++|++++|+ .+.+...|++.+. . ...+.||+||+||||||+ |+++
T Consensus 180 ~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~----------------~-~~~~~fD~VLlDaPCSg~g~g~~r 242 (359)
T 4fzv_A 180 LSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG----------------E-LEGDTYDRVLVDVPCTTDRHSLHE 242 (359)
T ss_dssp SCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH----------------H-HSTTCEEEEEEECCCCCHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc----------------h-hccccCCEEEECCccCCCCCcccc
Confidence 999999999999999875 2678889988764 1 235789999999999997 7889
Q ss_pred cCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecC-----C-----
Q psy15212 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS-----P----- 303 (329)
Q Consensus 234 ~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~-----~----- 303 (329)
++|+++|.++++++..+..+|.+||.+|+++|||||+|||||||++++|||+||++||++++++..++. .
T Consensus 243 ~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~ 322 (359)
T 4fzv_A 243 EENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRV 322 (359)
T ss_dssp CTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_pred cChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCcccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999998876433221 0
Q ss_pred --------------CcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 304 --------------GQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 304 --------------~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
.+++|+.. .++||||+|+|+|.+
T Consensus 323 ~~~~~~~~~~~~~g~r~~P~~~--~~~gGFFiA~L~KvS 359 (359)
T 4fzv_A 323 FMDTFCFFSSCQVGELVIPNLM--ANFGPMYFCKMRRLT 359 (359)
T ss_dssp HTTTCEECTTCSSSEEEECBTT--BCCCCEEEEEEEECC
T ss_pred cccccccCccccceEEECCCCC--CCCCCEEEEEEEECC
Confidence 14778751 467889999999974
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-49 Score=362.47 Aligned_cols=249 Identities=25% Similarity=0.426 Sum_probs=204.5
Q ss_pred HHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEE-eCCceEEE-cCCCCCCCCcccccceEEEechhHHHHhhhcCC
Q psy15212 53 LDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTI-IGPLAIKL-HTPISISKIPKFFNGFCSIQDAAAQLAAPLLDI 130 (329)
Q Consensus 53 l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~-~~~~~~~~-~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~ 130 (329)
++++++++|+++|||++|++++++.+.|++.|+...+ +.++++.+ ..+..+..++.|..|++++||.+|++++.++++
T Consensus 2 m~~~~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~ 81 (274)
T 3ajd_A 2 MIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNP 81 (274)
T ss_dssp -------CCEEEEECTTTCCHHHHHHHHHTTTCEEEECSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHHCC
T ss_pred hhhhCCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecCCCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHhCC
Confidence 4566789999999999999999999999999987764 55688888 455678899999999999999999999999999
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
++|++|||+|||||++|.++++.++ ++|+|+|+++.+++.+++|++++|+. ++++.+|+..+.
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~-------------- 147 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYK-------------- 147 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHH--------------
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcc--------------
Confidence 9999999999999999999999764 79999999999999999999999985 899999988764
Q ss_pred ccccc--CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHH
Q psy15212 208 RFRFY--KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285 (329)
Q Consensus 208 ~~~~~--~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~ 285 (329)
... ..+.||+|++||||||+|+++++| .++.+++..+...|.++|++++++|||||+|+|+|||++++|||+
T Consensus 148 --~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p----~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~ 221 (274)
T 3ajd_A 148 --DYLLKNEIFFDKILLDAPCSGNIIKDKNR----NVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEE 221 (274)
T ss_dssp --HHHHHTTCCEEEEEEEECCC----------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHH
T ss_pred --hhhhhccccCCEEEEcCCCCCCcccccCC----CCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHH
Confidence 100 146899999999999999999998 456778888888999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEecCC-----------------CcccCCCCCCCCCCeEEEEEEEec
Q psy15212 286 QAIIFSKNHKDSIRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 286 vv~~~l~~~~~~~~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
+|++++++|+++++++.. .+++|+. + + ||+|+|+|.
T Consensus 222 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~---~--~-ff~a~l~k~ 274 (274)
T 3ajd_A 222 VIKYILQKRNDVELIIIKANEFKGINIKEGYIKGTLRVFPPN---E--P-FFIAKLRKI 274 (274)
T ss_dssp HHHHHHHHCSSEEEECCCSTTCTTSCEEECSSTTCEEECTTS---C--C-EEEEEEEEC
T ss_pred HHHHHHHhCCCcEEecCccccccCcccccccCCCeEEECCCC---C--C-EEEEEEEEC
Confidence 999999999999887653 1356764 3 4 999999984
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-21 Score=182.62 Aligned_cols=164 Identities=19% Similarity=0.242 Sum_probs=132.7
Q ss_pred CCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceE
Q psy15212 104 SKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKAT 183 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~ 183 (329)
.....++.|.|..|..+..++..++ ++|++|||+|||+|++++++|.. ++.|+|+|+|+.+++.+++|++.+|+..+
T Consensus 188 d~~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~~ 264 (393)
T 4dmg_A 188 PLALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRVD 264 (393)
T ss_dssp ETTTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCCE
T ss_pred echhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCCc
Confidence 3456788999999999999888765 46899999999999999999985 55699999999999999999999999867
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
+.++|+.... .... +.||+|++||||.. .+...+....+.+.+++..+.+
T Consensus 265 ~~~~D~~~~l----------------~~~~-~~fD~Ii~dpP~f~-------------~~~~~~~~~~~~~~~ll~~a~~ 314 (393)
T 4dmg_A 265 IRHGEALPTL----------------RGLE-GPFHHVLLDPPTLV-------------KRPEELPAMKRHLVDLVREALR 314 (393)
T ss_dssp EEESCHHHHH----------------HTCC-CCEEEEEECCCCCC-------------SSGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEccHHHHH----------------HHhc-CCCCEEEECCCcCC-------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 7789987753 1122 34999999999852 2344677778888999999999
Q ss_pred cCCCCCEEEEEcCCCCccccH--HHHHHHHhh-CCCcEEe
Q psy15212 264 MLKPGGKLLFVTCSLWFEESE--EQAIIFSKN-HKDSIRL 300 (329)
Q Consensus 264 ~LkpgG~lvysTCS~~~~Ene--~vv~~~l~~-~~~~~~~ 300 (329)
+|+|||+|+|+|||.+..+++ +++.....+ ...++.+
T Consensus 315 ~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 315 LLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp TEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 999999999999999988877 566665543 3344443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=8e-18 Score=152.61 Aligned_cols=189 Identities=17% Similarity=0.120 Sum_probs=125.3
Q ss_pred cceEEEechh-------HHHHhhhcCCC-CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 111 NGFCSIQDAA-------AQLAAPLLDIR-SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 111 ~G~~~~Qd~~-------s~l~~~~l~~~-~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
.+..+.|+.. +.+.+.++.+. ++.+|||+|||+|..+..+++..+.+|+|+|+++.+++.+++|++.+++.
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~ 99 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED 99 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcc
Confidence 4555567776 78888888888 89999999999999999999876579999999999999999999999985
Q ss_pred -eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHH
Q psy15212 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259 (329)
Q Consensus 182 -v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~ 259 (329)
++++++|+.++. ..+..++||+|++||||... +.-...|+..+.... .........+++
T Consensus 100 ~v~~~~~D~~~~~----------------~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~l~ 160 (259)
T 3lpm_A 100 QIEIIEYDLKKIT----------------DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR---HEVMCTLEDTIR 160 (259)
T ss_dssp TEEEECSCGGGGG----------------GTSCTTCEEEEEECCCC--------------------------HHHHHHHH
T ss_pred cEEEEECcHHHhh----------------hhhccCCccEEEECCCCCCCccccCCCCchHHHhhh---ccccCCHHHHHH
Confidence 899999998765 22245789999999999765 211222221111100 011123457899
Q ss_pred HHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 260 NLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 260 ~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.+.++|||||++++. ++.+....+...++.+ ++..... ..+.|.. .....+++..++|.
T Consensus 161 ~~~~~LkpgG~l~~~----~~~~~~~~~~~~l~~~-~~~~~~~-~~v~~~~---~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 161 VAASLLKQGGKANFV----HRPERLLDIIDIMRKY-RLEPKRI-QFVHPRS---DREANTVLVEGIKD 219 (259)
T ss_dssp HHHHHEEEEEEEEEE----ECTTTHHHHHHHHHHT-TEEEEEE-EEEESST---TSCCSEEEEEEEET
T ss_pred HHHHHccCCcEEEEE----EcHHHHHHHHHHHHHC-CCceEEE-EEeecCC---CCCcEEEEEEEEeC
Confidence 999999999999985 3344455555666665 4433221 1122322 33345566666554
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-19 Score=167.95 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=129.1
Q ss_pred CCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eE
Q psy15212 105 KIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-AT 183 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~ 183 (329)
....+..|+|..|.....+++.+ +|++|||+|||+|+++.++|.. ..+|+++|+++.+++.+++|++.+|+. ++
T Consensus 186 ~~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~ 260 (382)
T 1wxx_A 186 LRAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVR 260 (382)
T ss_dssp CSTTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEE
T ss_pred chhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCce
Confidence 34567778888888887776654 6889999999999999999987 569999999999999999999999987 89
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++.+|+.+.. ..+ ...+.+||+|++|||+.+. +...+......+.+++..+.+
T Consensus 261 ~~~~d~~~~~-~~~-------------~~~~~~fD~Ii~dpP~~~~-------------~~~~~~~~~~~~~~~l~~~~~ 313 (382)
T 1wxx_A 261 VLEANAFDLL-RRL-------------EKEGERFDLVVLDPPAFAK-------------GKKDVERAYRAYKEVNLRAIK 313 (382)
T ss_dssp EEESCHHHHH-HHH-------------HHTTCCEEEEEECCCCSCC-------------STTSHHHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHH-HHH-------------HhcCCCeeEEEECCCCCCC-------------ChhHHHHHHHHHHHHHHHHHH
Confidence 9999988753 000 0014689999999997643 233456677788899999999
Q ss_pred cCCCCCEEEEEcCCCCcccc--HHHHHHH-HhhCCCcEEe
Q psy15212 264 MLKPGGKLLFVTCSLWFEES--EEQAIIF-SKNHKDSIRL 300 (329)
Q Consensus 264 ~LkpgG~lvysTCS~~~~En--e~vv~~~-l~~~~~~~~~ 300 (329)
+|+|||+|++++|+.+..++ ++.+... .+.+..++.+
T Consensus 314 ~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 314 LLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp TEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 99999999999999887765 4556544 4444456554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-19 Score=161.20 Aligned_cols=234 Identities=14% Similarity=0.073 Sum_probs=152.5
Q ss_pred HHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHH------CCCeeEEeCCceEEEcCCCCCCCCccc-ccceEEEechh
Q psy15212 48 QWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKK------SGLETTIIGPLAIKLHTPISISKIPKF-FNGFCSIQDAA 120 (329)
Q Consensus 48 ~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~Qd~~ 120 (329)
+++.+++.....++.++++|..+.-.++..+.+.+ .+.+..-+. + ...+.....+ ..|.++.+..+
T Consensus 23 ~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~--g-----~~~f~~~~~~~~~~~~ipr~~t 95 (276)
T 2b3t_A 23 DAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLT--G-----VREFWSLPLFVSPATLIPRPDT 95 (276)
T ss_dssp HHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHS--C-----EEEETTEEEECCTTSCCCCTTH
T ss_pred HHHHHHHHHhCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHcCCChhHee--e-----eeEECCceEEeCCCCcccCchH
Confidence 45667777777777888888765433332222221 222110000 0 0000111111 22334445555
Q ss_pred HHHHhhhcCC--CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDI--RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~--~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~ 196 (329)
..++..+++. .++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++|++++|+. ++++.+|+....
T Consensus 96 e~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~--- 172 (276)
T 2b3t_A 96 ECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL--- 172 (276)
T ss_dssp HHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---
T ss_pred HHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---
Confidence 5665555432 5678999999999999999998766 79999999999999999999999986 899999987642
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCcccc-------ccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG-------VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G-------~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
..+.||.|++||||.+.+ ++.+.|...+.- .......+.++++.+.++|+|||
T Consensus 173 ----------------~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~----~~~g~~~~~~~l~~~~~~LkpgG 232 (276)
T 2b3t_A 173 ----------------AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVA----ADSGMADIVHIIEQSRNALVSGG 232 (276)
T ss_dssp ----------------TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBC----HHHHTHHHHHHHHHHGGGEEEEE
T ss_pred ----------------ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcC----CCcHHHHHHHHHHHHHHhcCCCC
Confidence 246899999999998774 444455444321 11222445789999999999999
Q ss_pred EEEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 270 KLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 270 ~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
++++.++. .+.+.+..+++++ ++..+ .+.++. .+.+.|++|+
T Consensus 233 ~l~~~~~~----~~~~~~~~~l~~~-Gf~~v----~~~~d~---~g~~r~~~~~ 274 (276)
T 2b3t_A 233 FLLLEHGW----QQGEAVRQAFILA-GYHDV----ETCRDY---GDNERVTLGR 274 (276)
T ss_dssp EEEEECCS----SCHHHHHHHHHHT-TCTTC----CEEECT---TSSEEEEEEE
T ss_pred EEEEEECc----hHHHHHHHHHHHC-CCcEE----EEEecC---CCCCcEEEEE
Confidence 99998553 3445566777765 44322 233444 6778888875
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=148.88 Aligned_cols=131 Identities=20% Similarity=0.126 Sum_probs=100.3
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+++|++|||+|||||+++.++|+.++ ++|+|+|+++.+++.+.+..++. -.+.++.+|++....
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~~------------ 139 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQS------------ 139 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGGG------------
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccchh------------
Confidence 388999999999999999999999865 79999999999987776665543 248889999987530
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH-HHHhcCCCCCEEEEE---cC---CCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN-NLWKMLKPGGKLLFV---TC---SLW 279 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~-~a~~~LkpgG~lvys---TC---S~~ 279 (329)
.....+.||+|++|.+- | .|.++|. .+.++|||||+|+++ +| +..
T Consensus 140 ---~~~~~~~~D~I~~d~a~---------~----------------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~ 191 (232)
T 3id6_C 140 ---YKSVVENVDVLYVDIAQ---------P----------------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKD 191 (232)
T ss_dssp ---TTTTCCCEEEEEECCCC---------T----------------THHHHHHHHHHHHEEEEEEEEEEEC-------CC
T ss_pred ---hhccccceEEEEecCCC---------h----------------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCC
Confidence 00123689999999762 1 1445554 455599999999987 89 999
Q ss_pred ccccHHHHHHHHhhCCCcEEec
Q psy15212 280 FEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 280 ~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
++||.+.+.++|+.+ +|+++.
T Consensus 192 ~~e~~~~~~~~L~~~-gf~~~~ 212 (232)
T 3id6_C 192 PKEIYKTEVEKLENS-NFETIQ 212 (232)
T ss_dssp SSSSTTHHHHHHHHT-TEEEEE
T ss_pred HHHHHHHHHHHHHHC-CCEEEE
Confidence 999999999999988 587665
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=165.93 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=126.2
Q ss_pred CCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--
Q psy15212 103 ISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-- 180 (329)
Q Consensus 103 ~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-- 180 (329)
+.....+++|.|..|....+++..+ .+|++|||+|||+|++++++|.....+|+|+|+++.+++.+++|++.+|+
T Consensus 194 v~~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~ 270 (396)
T 3c0k_A 194 VDIQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL 270 (396)
T ss_dssp ECTTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred EeccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 3444567789998888887777766 47889999999999999999986436999999999999999999999998
Q ss_pred -ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH
Q psy15212 181 -KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259 (329)
Q Consensus 181 -~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~ 259 (329)
.++++.+|+.... ..+ . ..+.+||+|++|||+.+.+. .. +......+.+++.
T Consensus 271 ~~v~~~~~D~~~~~-~~~------------~-~~~~~fD~Ii~dpP~~~~~~-----~~--------~~~~~~~~~~~l~ 323 (396)
T 3c0k_A 271 SKAEFVRDDVFKLL-RTY------------R-DRGEKFDVIVMDPPKFVENK-----SQ--------LMGACRGYKDINM 323 (396)
T ss_dssp GGEEEEESCHHHHH-HHH------------H-HTTCCEEEEEECCSSTTTCS-----SS--------SSCCCTHHHHHHH
T ss_pred cceEEEECCHHHHH-HHH------------H-hcCCCCCEEEECCCCCCCCh-----hH--------HHHHHHHHHHHHH
Confidence 4899999987753 000 0 01358999999999864321 00 0111123567899
Q ss_pred HHHhcCCCCCEEEEEcCCCCcc--ccHHHHHHHH-hhCCCcEEe
Q psy15212 260 NLWKMLKPGGKLLFVTCSLWFE--ESEEQAIIFS-KNHKDSIRL 300 (329)
Q Consensus 260 ~a~~~LkpgG~lvysTCS~~~~--Ene~vv~~~l-~~~~~~~~~ 300 (329)
.+.++|+|||++++++|+.+.. ++++++...+ +.+..++.+
T Consensus 324 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 324 LAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp HHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999997765 5677777444 444455544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=148.20 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=125.9
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDIS 190 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~ 190 (329)
.+++..+.+...++...++.+|||+|||+|..+.++|+.++ ++|+++|+++.+++.+++|+++.|+. ++++.+|+.
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 120 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH
Confidence 34566777777777777788999999999999999998753 79999999999999999999999985 899999987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
+.. +.+ . .....+.||.|++|+++... ....+++..+ ++|||||+
T Consensus 121 ~~l-~~~--------~---~~~~~~~fD~V~~d~~~~~~----------------------~~~~~~~~~~-~~LkpgG~ 165 (221)
T 3u81_A 121 DLI-PQL--------K---KKYDVDTLDMVFLDHWKDRY----------------------LPDTLLLEKC-GLLRKGTV 165 (221)
T ss_dssp HHG-GGT--------T---TTSCCCCCSEEEECSCGGGH----------------------HHHHHHHHHT-TCCCTTCE
T ss_pred HHH-HHH--------H---HhcCCCceEEEEEcCCcccc----------------------hHHHHHHHhc-cccCCCeE
Confidence 642 000 0 00012689999999864411 1123456666 99999999
Q ss_pred EEEEcCCCCccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 271 LLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 271 lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
|++.+|.... ......++..++.++....+ ..+|.. ...|||++++++..
T Consensus 166 lv~~~~~~~~---~~~~~~~l~~~~~~~~~~~~-~~~~~~---~~~dG~~~~~~~g~ 215 (221)
T 3u81_A 166 LLADNVIVPG---TPDFLAYVRGSSSFECTHYS-SYLEYM---KVVDGLEKAIYQGP 215 (221)
T ss_dssp EEESCCCCCC---CHHHHHHHHHCTTEEEEEEE-EEETTT---TEEEEEEEEEECCC
T ss_pred EEEeCCCCcc---hHHHHHHHhhCCCceEEEcc-cccccC---CCCCceEEEEEeCC
Confidence 9999888532 23445666778887655432 344555 67899999998753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=172.91 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=126.1
Q ss_pred EeCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHH
Q psy15212 89 IIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRL 168 (329)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl 168 (329)
++.++++.+. +.....++.|.+..|....+++.... +|.+|||+|||+|+++++++.....+|+++|+|+.++
T Consensus 503 ~v~E~g~~~~----v~~~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al 575 (703)
T 3v97_A 503 EVTEYNAHLW----VNLTDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYL 575 (703)
T ss_dssp EEEETTEEEE----ECSSSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred EEEECCEEEE----EeccccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHH
Confidence 3455666654 22345678899999999988887754 6889999999999999999974336899999999999
Q ss_pred HHHHHHHHHcCCc---eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChh
Q psy15212 169 NMISENLKRLNLK---ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245 (329)
Q Consensus 169 ~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~ 245 (329)
+.+++|++.+|+. ++++++|+.+.. . ...++||+|++||||.+.+.- ..
T Consensus 576 ~~a~~N~~~ngl~~~~v~~i~~D~~~~l----------------~-~~~~~fD~Ii~DPP~f~~~~~-----------~~ 627 (703)
T 3v97_A 576 EWAERNLRLNGLTGRAHRLIQADCLAWL----------------R-EANEQFDLIFIDPPTFSNSKR-----------ME 627 (703)
T ss_dssp HHHHHHHHHTTCCSTTEEEEESCHHHHH----------------H-HCCCCEEEEEECCCSBC-----------------
T ss_pred HHHHHHHHHcCCCccceEEEecCHHHHH----------------H-hcCCCccEEEECCccccCCcc-----------ch
Confidence 9999999999985 899999998743 1 124689999999999754321 01
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 246 ~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
+.....+.+.+++..+.++|+|||+|++|+|+-....+++..+
T Consensus 628 ~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~ 670 (703)
T 3v97_A 628 DAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA 670 (703)
T ss_dssp -CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH
Confidence 1123345678899999999999999999999966666655443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=161.24 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=127.2
Q ss_pred cccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEE
Q psy15212 107 PKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATL 184 (329)
Q Consensus 107 ~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~ 184 (329)
..++.|.+..|.....++..++ ++|++|||+|||+|+++.++|.....+|+|+|+++.+++.+++|++.+|+. +++
T Consensus 194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~ 271 (396)
T 2as0_A 194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKF 271 (396)
T ss_dssp SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE
Confidence 4566788877888877777654 478999999999999999999862259999999999999999999999984 899
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhc
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKM 264 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~ 264 (329)
+.+|+.... ..+ .....+||+|++|||+.+. +...+......+.+++..++++
T Consensus 272 ~~~d~~~~~-~~~-------------~~~~~~fD~Vi~dpP~~~~-------------~~~~~~~~~~~~~~~l~~~~~~ 324 (396)
T 2as0_A 272 IVGSAFEEM-EKL-------------QKKGEKFDIVVLDPPAFVQ-------------HEKDLKAGLRAYFNVNFAGLNL 324 (396)
T ss_dssp EESCHHHHH-HHH-------------HHTTCCEEEEEECCCCSCS-------------SGGGHHHHHHHHHHHHHHHHTT
T ss_pred EECCHHHHH-HHH-------------HhhCCCCCEEEECCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHh
Confidence 999987653 000 0024689999999997632 3345666677788999999999
Q ss_pred CCCCCEEEEEcCCCCccc--cHHHHHHHHhh-CCCcEEec
Q psy15212 265 LKPGGKLLFVTCSLWFEE--SEEQAIIFSKN-HKDSIRLN 301 (329)
Q Consensus 265 LkpgG~lvysTCS~~~~E--ne~vv~~~l~~-~~~~~~~~ 301 (329)
|+|||+|+|++|+.+..+ .++.+...... ...++.+.
T Consensus 325 LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 325 VKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp EEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 999999999999976654 35555544443 33455544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=147.30 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=122.5
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISK 191 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~ 191 (329)
++...+.+...++...++.+|||+|||+|..+..+++.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+..
T Consensus 47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 126 (248)
T 3tfw_A 47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ 126 (248)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 3455666666666667789999999999999999998864 79999999999999999999999985 8999999876
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.. + .....+.||+|++|+++.. ...+++.+.++|||||+|
T Consensus 127 ~l-~--------------~~~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~LkpGG~l 166 (248)
T 3tfw_A 127 SL-E--------------SLGECPAFDLIFIDADKPN-------------------------NPHYLRWALRYSRPGTLI 166 (248)
T ss_dssp HH-H--------------TCCSCCCCSEEEECSCGGG-------------------------HHHHHHHHHHTCCTTCEE
T ss_pred HH-H--------------hcCCCCCeEEEEECCchHH-------------------------HHHHHHHHHHhcCCCeEE
Confidence 42 0 1112348999999987441 234788999999999999
Q ss_pred EEEcCCCC--------ccccHHHHHHH---HhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 272 LFVTCSLW--------FEESEEQAIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 272 vysTCS~~--------~~Ene~vv~~~---l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
++.++.+. ..++...+..| +..++++.....+ .+ +. ...|||++|++++.
T Consensus 167 v~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~--~~-g~---~~~DG~~i~~~~~~ 227 (248)
T 3tfw_A 167 IGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQ--TV-GT---KGWDGFTLAWVNAA 227 (248)
T ss_dssp EEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEE--EC-ST---TCSEEEEEEEECCC
T ss_pred EEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEee--cC-CC---CCCCeeEEEEEeCC
Confidence 99888755 22223334444 4456776643220 01 22 46799999999875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-18 Score=163.60 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=119.7
Q ss_pred CCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC---c
Q psy15212 105 KIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL---K 181 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~---~ 181 (329)
....+++|.|..|.....+...++ .+|.+|||+|||+|++++++|.....+|+++|+|+.+++.+++|++.+|+ .
T Consensus 187 ~~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~ 264 (385)
T 2b78_A 187 LNDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMAN 264 (385)
T ss_dssp SSSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTT
T ss_pred ccccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence 345567788877777777777665 57889999999999999999975335999999999999999999999998 4
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
++++.+|+.+.. +.+ ...+.+||+|++|||+.+.+. .......+.+.+++..+
T Consensus 265 v~~~~~D~~~~l-~~~-------------~~~~~~fD~Ii~DPP~~~~~~-------------~~~~~~~~~~~~ll~~~ 317 (385)
T 2b78_A 265 HQLVVMDVFDYF-KYA-------------RRHHLTYDIIIIDPPSFARNK-------------KEVFSVSKDYHKLIRQG 317 (385)
T ss_dssp EEEEESCHHHHH-HHH-------------HHTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHHHH
T ss_pred eEEEECCHHHHH-HHH-------------HHhCCCccEEEECCCCCCCCh-------------hhHHHHHHHHHHHHHHH
Confidence 789999987642 000 002358999999999864321 01112334467789999
Q ss_pred HhcCCCCCEEEEEcCCCCc--cccHHHHHHHHhhC
Q psy15212 262 WKMLKPGGKLLFVTCSLWF--EESEEQAIIFSKNH 294 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~~--~Ene~vv~~~l~~~ 294 (329)
.++|+|||.|++++|+-.. ++..+.+.....+.
T Consensus 318 ~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~ 352 (385)
T 2b78_A 318 LEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQ 352 (385)
T ss_dssp HHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTC
T ss_pred HHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHc
Confidence 9999999999999998664 44555666666554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-17 Score=143.24 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=119.7
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
+....++...++...++.+|||+|||+|..+.++++.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+...
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 122 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS 122 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 455666666666667788999999999999999999874 79999999999999999999999984 89999998764
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
. +.+ .....+.||.|++|+++.. ...+++.+.++|+|||.++
T Consensus 123 ~-~~~------------~~~~~~~fD~v~~d~~~~~-------------------------~~~~l~~~~~~L~pgG~lv 164 (223)
T 3duw_A 123 L-QQI------------ENEKYEPFDFIFIDADKQN-------------------------NPAYFEWALKLSRPGTVII 164 (223)
T ss_dssp H-HHH------------HHTTCCCCSEEEECSCGGG-------------------------HHHHHHHHHHTCCTTCEEE
T ss_pred H-HHH------------HhcCCCCcCEEEEcCCcHH-------------------------HHHHHHHHHHhcCCCcEEE
Confidence 2 000 0001257999999988541 2357889999999999999
Q ss_pred EEcCCCCc--------cccHHHHHHH---HhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 273 FVTCSLWF--------EESEEQAIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 273 ysTCS~~~--------~Ene~vv~~~---l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
+.++.+.. .++...+..| +..++.+.....| +. +. .++|||++|+++|
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p--~~-~~---~~~dG~~~~~~~~ 223 (223)
T 3duw_A 165 GDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQ--TV-GS---KGYDGFIMAVVKE 223 (223)
T ss_dssp EESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEE--EE-ET---TEEEEEEEEEEC-
T ss_pred EeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEe--cc-CC---CCCCeeEEEEEeC
Confidence 87665441 2222333444 4456666543221 11 12 5789999999876
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=152.65 Aligned_cols=158 Identities=17% Similarity=0.112 Sum_probs=115.2
Q ss_pred CcccccceEEEechhHHHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---
Q psy15212 106 IPKFFNGFCSIQDAAAQLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--- 181 (329)
Q Consensus 106 ~~~~~~G~~~~Qd~~s~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--- 181 (329)
...++.|.+..|......+...+. ..++.+|||+|||+|+.++.++... .+|+++|+|+.+++.+++|++.+++.
T Consensus 126 ~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g-a~V~~VD~s~~al~~a~~n~~~~gl~~~~ 204 (332)
T 2igt_A 126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG-AEVTHVDASKKAIGWAKENQVLAGLEQAP 204 (332)
T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHHHTCTTSC
T ss_pred CccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCccc
Confidence 455667888888888776666664 4567899999999999999999854 49999999999999999999999984
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
++++++|+.++.. .. ....++||+|++||||.+.+.-. + +......+.++++.+
T Consensus 205 v~~i~~D~~~~l~-~~-------------~~~~~~fD~Ii~dPP~~~~~~~~---~---------~~~~~~~~~~ll~~~ 258 (332)
T 2igt_A 205 IRWICEDAMKFIQ-RE-------------ERRGSTYDIILTDPPKFGRGTHG---E---------VWQLFDHLPLMLDIC 258 (332)
T ss_dssp EEEECSCHHHHHH-HH-------------HHHTCCBSEEEECCCSEEECTTC---C---------EEEHHHHHHHHHHHH
T ss_pred eEEEECcHHHHHH-HH-------------HhcCCCceEEEECCccccCCchH---H---------HHHHHHHHHHHHHHH
Confidence 7899999877530 00 00146899999999998654210 0 011233456789999
Q ss_pred HhcCCCCCE-EEEEcCCCCccccHHHHHHHHh
Q psy15212 262 WKMLKPGGK-LLFVTCSLWFEESEEQAIIFSK 292 (329)
Q Consensus 262 ~~~LkpgG~-lvysTCS~~~~Ene~vv~~~l~ 292 (329)
.++|+|||. ++..+|+... +.+....+++
T Consensus 259 ~~~LkpgG~lli~~~~~~~~--~~~~~~~~l~ 288 (332)
T 2igt_A 259 REILSPKALGLVLTAYSIRA--SFYSMHELMR 288 (332)
T ss_dssp HHTBCTTCCEEEEEECCTTS--CHHHHHHHHH
T ss_pred HHhcCcCcEEEEEECCCCCC--CHHHHHHHHH
Confidence 999999998 4555676543 3334444443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-17 Score=145.28 Aligned_cols=127 Identities=16% Similarity=0.222 Sum_probs=105.4
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
|...+|...+.++..++.+.++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.|+. ++++.+|
T Consensus 34 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 113 (233)
T 2gpy_A 34 QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD 113 (233)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC
T ss_pred CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 44567788888888888878899999999999999999999875 79999999999999999999999984 8999999
Q ss_pred ccccchhhhhhhhccccccccccc-CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFY-KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP 267 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp 267 (329)
+.... ... ..+.||+|++|++++ .+..+++.+.++|+|
T Consensus 114 ~~~~~----------------~~~~~~~~fD~I~~~~~~~-------------------------~~~~~l~~~~~~L~p 152 (233)
T 2gpy_A 114 ALQLG----------------EKLELYPLFDVLFIDAAKG-------------------------QYRRFFDMYSPMVRP 152 (233)
T ss_dssp GGGSH----------------HHHTTSCCEEEEEEEGGGS-------------------------CHHHHHHHHGGGEEE
T ss_pred HHHHH----------------HhcccCCCccEEEECCCHH-------------------------HHHHHHHHHHHHcCC
Confidence 87742 011 136899999999865 135689999999999
Q ss_pred CCEEEEEcCCCC
Q psy15212 268 GGKLLFVTCSLW 279 (329)
Q Consensus 268 gG~lvysTCS~~ 279 (329)
||+++++++.+.
T Consensus 153 gG~lv~~~~~~~ 164 (233)
T 2gpy_A 153 GGLILSDNVLFR 164 (233)
T ss_dssp EEEEEEETTTC-
T ss_pred CeEEEEEcCCcC
Confidence 999999976443
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-18 Score=161.17 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=116.5
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc---------------CC
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL---------------NL 180 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~---------------g~ 180 (329)
|.....+...++...+|.+|||+|||+|.+++.+|...+ .+|+++|+++.+++.+++|++++ |+
T Consensus 32 ~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl 111 (378)
T 2dul_A 32 MALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE 111 (378)
T ss_dssp GHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC
Confidence 454544433333323688999999999999999999866 68999999999999999999999 88
Q ss_pred c-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH
Q psy15212 181 K-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259 (329)
Q Consensus 181 ~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~ 259 (329)
. ++++++|+..+. .. ..+.||+|++||||+. .++|+
T Consensus 112 ~~i~v~~~Da~~~~----------------~~-~~~~fD~I~lDP~~~~--------------------------~~~l~ 148 (378)
T 2dul_A 112 KTIVINHDDANRLM----------------AE-RHRYFHFIDLDPFGSP--------------------------MEFLD 148 (378)
T ss_dssp SEEEEEESCHHHHH----------------HH-STTCEEEEEECCSSCC--------------------------HHHHH
T ss_pred CceEEEcCcHHHHH----------------Hh-ccCCCCEEEeCCCCCH--------------------------HHHHH
Confidence 7 899999988753 11 1357999999999872 35789
Q ss_pred HHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEE-ecC--------------------CCcccCCCCCCCCCCe
Q psy15212 260 NLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIR-LNS--------------------PGQLLPTVNKKQDYDG 318 (329)
Q Consensus 260 ~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~-~~~--------------------~~~~~p~~~~~~~~~g 318 (329)
.|++.|++|| ++|.||+-....+.......+.++...-. .+. ...+.|.. ...+|
T Consensus 149 ~a~~~lk~gG-~l~vt~td~~~l~~~~~~~~~~~yg~~p~~~~~~~e~~~ri~l~~~~~~~~~~g~~i~P~~---~~~~~ 224 (378)
T 2dul_A 149 TALRSAKRRG-ILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVIL---AYYKD 224 (378)
T ss_dssp HHHHHEEEEE-EEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEE---EEEET
T ss_pred HHHHhcCCCC-EEEEEeecchhhccccHHHHHHHccCCCcccccccchhHHHHHHHHHHhcCcCCcEEEEEE---EEecC
Confidence 9999999999 77889975543322233334433321100 000 01345544 46679
Q ss_pred EEEEEEEec
Q psy15212 319 FFYSLFQKR 327 (329)
Q Consensus 319 ff~a~l~k~ 327 (329)
||++++.|.
T Consensus 225 ~y~rv~vrv 233 (378)
T 2dul_A 225 HYFRAFVKL 233 (378)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999998874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=138.81 Aligned_cols=169 Identities=18% Similarity=0.153 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHCCCeeEEe-------CCceEEEcCCCCCCCCcccccceEEEechhH-HHHhhhcC--CCCCCeEEee
Q psy15212 70 KTTLISYNKLLKKSGLETTII-------GPLAIKLHTPISISKIPKFFNGFCSIQDAAA-QLAAPLLD--IRSGMYVLDA 139 (329)
Q Consensus 70 k~~~~~~~~~l~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s-~l~~~~l~--~~~g~~VLDl 139 (329)
.++.+++.+.|.+.|+...+. .+.....+. ......+.+..+...++++.. .....++. ++++.+|||+
T Consensus 6 ~~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~-~~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDi 84 (226)
T 1i1n_A 6 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKC-NPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDV 84 (226)
T ss_dssp CSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSS-CTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEE
T ss_pred CchHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCC-ccCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 467889999999998742110 011111111 122233333344455666552 22233443 7889999999
Q ss_pred cCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC------ceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 140 CSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL------KATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 140 cag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
|||+|.++.++++.++ ++|+++|+++.+++.+++++.+.++ .++++.+|+....
T Consensus 85 G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------------------ 146 (226)
T 1i1n_A 85 GSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY------------------ 146 (226)
T ss_dssp TCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC------------------
T ss_pred cCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc------------------
Confidence 9999999999998864 6999999999999999999998764 3889999987543
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHH
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~ 285 (329)
...+.||+|+++++|.. +++.+.+.|||||+|++++|+...+++..
T Consensus 147 ~~~~~fD~i~~~~~~~~----------------------------~~~~~~~~LkpgG~lv~~~~~~~~~~~~~ 192 (226)
T 1i1n_A 147 AEEAPYDAIHVGAAAPV----------------------------VPQALIDQLKPGGRLILPVGPAGGNQMLE 192 (226)
T ss_dssp GGGCCEEEEEECSBBSS----------------------------CCHHHHHTEEEEEEEEEEESCTTSCEEEE
T ss_pred ccCCCcCEEEECCchHH----------------------------HHHHHHHhcCCCcEEEEEEecCCCceEEE
Confidence 12457999999998741 24567889999999999999987766654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-18 Score=155.71 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=117.4
Q ss_pred HHHHhCCCCCeeEEEcCCCCCHHHH-HHHHHHCCCee-EEeCCceEEEcCCCCCCCCcccccceEEEechhHHHHhhhcC
Q psy15212 52 ILDVGHKKPPLTLRINQRKTTLISY-NKLLKKSGLET-TIIGPLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLD 129 (329)
Q Consensus 52 ~l~~~~~~~p~~~RvN~~k~~~~~~-~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~l~~~~l~ 129 (329)
++.+.++.++++.|+|+.+.+.+.+ .+.|...++.. .......+....+........+..+...+++..+..+...++
T Consensus 28 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (275)
T 1yb2_A 28 ILVSEDEYGKFDESTNSILVKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCG 107 (275)
T ss_dssp EEECSSCCEEEETTTTEEEC-CCEEECC-CCCCCTTCEEEETTEEEEEECCCGGGHHHHC------------------CC
T ss_pred EEEecCCCCceeccccceeccCCccchhheeCCCCCcEEEECCeEEEEeCCCHHHHHhhccccccccChhhHHHHHHHcC
Confidence 3457788889999999666543322 12233333311 112222232323333334455566777788888888888889
Q ss_pred CCCCCeEEeecCCCchHHHHHHHh-CC-CEEEEEeCChhHHHHHHHHHHHc-CCc-eEEEecCccccchhhhhhhhcccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEI-AD-IKLISVDNNLSRLNMISENLKRL-NLK-ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~-~~-~~v~avD~~~~rl~~l~~n~~~~-g~~-v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+.++.+|||+|||+|..+.++++. .+ ++|+++|+++.+++.+++++++. |.. ++++.+|+....
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~------------ 175 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI------------ 175 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC------------
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC------------
Confidence 999999999999999999999987 33 79999999999999999999998 875 899999987632
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.++.||+|++|+|.. .++|+.+.+.|||||++++++|+.
T Consensus 176 -------~~~~fD~Vi~~~~~~---------------------------~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 176 -------SDQMYDAVIADIPDP---------------------------WNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp -------CSCCEEEEEECCSCG---------------------------GGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -------cCCCccEEEEcCcCH---------------------------HHHHHHHHHHcCCCCEEEEEeCCH
Confidence 346899999988721 146889999999999999998864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-17 Score=149.65 Aligned_cols=220 Identities=13% Similarity=0.071 Sum_probs=140.0
Q ss_pred cHHHHHHHHHhCCC-hHHHHHHHHHhCCCCCeeEEEcC--CC-CCHHHHHHHHHH--CCCeeEEeC----CceEEEcCCC
Q psy15212 32 PIWWINQVKITYPN-FFQWKNILDVGHKKPPLTLRINQ--RK-TTLISYNKLLKK--SGLETTIIG----PLAIKLHTPI 101 (329)
Q Consensus 32 P~w~~~~~~~~~~~-~~~~~~~l~~~~~~~p~~~RvN~--~k-~~~~~~~~~l~~--~g~~~~~~~----~~~~~~~~~~ 101 (329)
=.|..++|.+.+.+ ..+++-++......++.+++.|. .. .+.+.+.+.+.+ .+.+..-+. ..+..+.
T Consensus 20 ~~~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~p~~yi~g~~~f~~~~~~--- 96 (284)
T 1nv8_A 20 IRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFL--- 96 (284)
T ss_dssp HHHHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEE---
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCHHHHHHHHHHHHCCCCCeEEeeeeEECCeEEE---
Confidence 34667777665422 13566788888888888888876 22 222344444332 332211000 0111111
Q ss_pred CCCCCcccccceEEEechhHHHHhhhcC---CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHH
Q psy15212 102 SISKIPKFFNGFCSIQDAAAQLAAPLLD---IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 102 ~~~~~~~~~~G~~~~Qd~~s~l~~~~l~---~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~ 177 (329)
...|.++.+..+..++..++. ..++.+|||+|||+|..+..++.. + .+|+|+|+|+.+++.+++|+++
T Consensus 97 -------v~~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 97 -------VEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp -------CCTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHH
T ss_pred -------eCCCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 012333444555555544442 346789999999999999999988 5 7999999999999999999999
Q ss_pred cCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCC---CEEEEccCCccccccccCCCCcccCChhHHHHHHH
Q psy15212 178 LNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYF---DRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 252 (329)
Q Consensus 178 ~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~f---D~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~ 252 (329)
+|+. ++++.+|+.... . ++| |+|++||||.+.+. ...++++|. +.....-..
T Consensus 169 ~~l~~~v~~~~~D~~~~~-------------------~-~~f~~~D~IvsnPPyi~~~~-~l~~~v~~e--p~~al~~~~ 225 (284)
T 1nv8_A 169 HGVSDRFFVRKGEFLEPF-------------------K-EKFASIEMILSNPPYVKSSA-HLPKDVLFE--PPEALFGGE 225 (284)
T ss_dssp TTCTTSEEEEESSTTGGG-------------------G-GGTTTCCEEEECCCCBCGGG-SCTTSCCCS--CHHHHBCTT
T ss_pred cCCCCceEEEECcchhhc-------------------c-cccCCCCEEEEcCCCCCccc-ccChhhccC--cHHHhcCCC
Confidence 9985 899999988643 1 357 99999999998887 555665532 111000000
Q ss_pred HHHHHHHHHH-hcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 253 YSCKILNNLW-KMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 253 ~q~~lL~~a~-~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
....+++.+. +.|+|||.+++. +...+++++.+
T Consensus 226 dgl~~~~~i~~~~l~pgG~l~~e---~~~~q~~~v~~ 259 (284)
T 1nv8_A 226 DGLDFYREFFGRYDTSGKIVLME---IGEDQVEELKK 259 (284)
T ss_dssp TSCHHHHHHHHHCCCTTCEEEEE---CCTTCHHHHTT
T ss_pred cHHHHHHHHHHhcCCCCCEEEEE---ECchHHHHHHH
Confidence 0125788888 999999999964 34445555433
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-17 Score=145.95 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=120.3
Q ss_pred eEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 113 FCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 113 ~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
.+.++....++...++...++.+|||+|||+|..+..+|+.++ ++|+++|+++.+++.+++++++.|+. ++++.+|
T Consensus 41 ~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd 120 (242)
T 3r3h_A 41 NMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP 120 (242)
T ss_dssp GTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC
T ss_pred CCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 3456677777777777767788999999999999999999774 79999999999999999999999985 8999999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+.... ..+. .....+.||+|++|++... ...+++.+.++|+||
T Consensus 121 a~~~l-~~~~-----------~~~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~LkpG 163 (242)
T 3r3h_A 121 ALDTL-HSLL-----------NEGGEHQFDFIFIDADKTN-------------------------YLNYYELALKLVTPK 163 (242)
T ss_dssp HHHHH-HHHH-----------HHHCSSCEEEEEEESCGGG-------------------------HHHHHHHHHHHEEEE
T ss_pred HHHHH-HHHh-----------hccCCCCEeEEEEcCChHH-------------------------hHHHHHHHHHhcCCC
Confidence 87643 0000 0001368999999987321 234688899999999
Q ss_pred CEEEEEcCCCCc-----ccc---HHHHHHH---HhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 269 GKLLFVTCSLWF-----EES---EEQAIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 269 G~lvysTCS~~~-----~En---e~vv~~~---l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
|.|++..+.+.. ..+ ...+..| +..++++... ++| .+|||++|+.+|.
T Consensus 164 G~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp------~~dG~~~~~k~~~ 222 (242)
T 3r3h_A 164 GLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVS-----LLA------IADGMFLVQPIAE 222 (242)
T ss_dssp EEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEE-----EES------SSSCEEEEEEC--
T ss_pred eEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEE-----EEE------ccCceEEEEEcCC
Confidence 999987665432 222 2233333 4456666543 234 3589999997765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-16 Score=145.18 Aligned_cols=139 Identities=21% Similarity=0.170 Sum_probs=111.5
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC-C-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-D-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLY 198 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~-~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~ 198 (329)
.....++..+++..|||+|||+|..+..++... + .+|+|+|+++.+++.+++|+++.|+. +++.++|+.++.
T Consensus 193 ~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~----- 267 (354)
T 3tma_A 193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP----- 267 (354)
T ss_dssp HHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG-----
T ss_pred HHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc-----
Confidence 334455677889999999999999999999876 3 79999999999999999999999996 899999999865
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.....||.|++||||.- + ......+...+.++++.+.+.|+|||++++.||
T Consensus 268 -------------~~~~~~D~Ii~npPyg~------------r--~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-- 318 (354)
T 3tma_A 268 -------------RFFPEVDRILANPPHGL------------R--LGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-- 318 (354)
T ss_dssp -------------GTCCCCSEEEECCCSCC------------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEES--
T ss_pred -------------cccCCCCEEEECCCCcC------------c--cCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC--
Confidence 12356999999999851 1 111245566788999999999999999999988
Q ss_pred CccccHHHHHHHHhhCCCcEEe
Q psy15212 279 WFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
|++.+..+++ .+++..
T Consensus 319 ----~~~~~~~~~~--~g~~~~ 334 (354)
T 3tma_A 319 ----RPALLKRALP--PGFALR 334 (354)
T ss_dssp ----CHHHHHHHCC--TTEEEE
T ss_pred ----CHHHHHHHhh--cCcEEE
Confidence 4566777776 466543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=143.27 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=100.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+++|++|||+|||+|+.+..+|+....+|+|+|+|+.+++.+++|++.+|+. ++++++|+.++.
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~-------------- 188 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------------- 188 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------------
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc--------------
Confidence 4678999999999999999999876557999999999999999999999986 889999998875
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC---CccccH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL---WFEESE 284 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~---~~~Ene 284 (329)
..+.||+|++|||++. .+++..+.++|+|||++++++|+- ..++..
T Consensus 189 -----~~~~fD~Vi~~~p~~~--------------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 237 (278)
T 2frn_A 189 -----GENIADRILMGYVVRT--------------------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPF 237 (278)
T ss_dssp -----CCSCEEEEEECCCSSG--------------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTH
T ss_pred -----ccCCccEEEECCchhH--------------------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHH
Confidence 2578999999999652 246888999999999999999983 234555
Q ss_pred HHHHHHHhhC
Q psy15212 285 EQAIIFSKNH 294 (329)
Q Consensus 285 ~vv~~~l~~~ 294 (329)
+.+...+++.
T Consensus 238 ~~i~~~~~~~ 247 (278)
T 2frn_A 238 ETFKRITKEY 247 (278)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 5666666665
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=135.42 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=101.4
Q ss_pred CCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+++|.+|||+||| +|..+..+++..+.+|+|+|+++.+++.+++|++.+++.++++.+|+..+.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--------------- 117 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK--------------- 117 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSST---------------
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhh---------------
Confidence 5688999999999 999999999875569999999999999999999999988899999976543
Q ss_pred ccccCCCCCCEEEEccCCccccccccC-CCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRN-PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~-p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
. +.++.||+|++|||+...+.-... |...|....... ....++++.+.++|||||++++.+.+- .+..+.+
T Consensus 118 -~-~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~ 189 (230)
T 3evz_A 118 -G-VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGE----EFSVKLLEEAFDHLNPGGKVALYLPDK--EKLLNVI 189 (230)
T ss_dssp -T-TCCSCEEEEEECCCCC---------------CCSSSC----HHHHHHHHHHGGGEEEEEEEEEEEESC--HHHHHHH
T ss_pred -h-cccCceeEEEECCCCcCCccccccChhhhhccCccch----HHHHHHHHHHHHHhCCCeEEEEEeccc--HhHHHHH
Confidence 1 234789999999999765442211 111111110111 123678999999999999999875432 2344455
Q ss_pred HHHHhhCCCcEE
Q psy15212 288 IIFSKNHKDSIR 299 (329)
Q Consensus 288 ~~~l~~~~~~~~ 299 (329)
...++++ ++..
T Consensus 190 ~~~l~~~-g~~~ 200 (230)
T 3evz_A 190 KERGIKL-GYSV 200 (230)
T ss_dssp HHHHHHT-TCEE
T ss_pred HHHHHHc-CCce
Confidence 5566665 4443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-15 Score=128.53 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=104.8
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
....++...+.+.++++|||+|||+|..+..+++. +.+|+|+|+++.+++.+++|++++|+. ++++.+|+....
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--- 117 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--- 117 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG---
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc---
Confidence 33445556677889999999999999999999987 679999999999999999999999986 899999988732
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.....||.|++++.. .+. +++.+.+.|||||+++++++
T Consensus 118 ---------------~~~~~~D~v~~~~~~--------------------------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 118 ---------------ADLPLPEAVFIGGGG--------------------------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp ---------------TTSCCCSEEEECSCC--------------------------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred ---------------ccCCCCCEEEECCcc--------------------------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 122579999987621 023 78999999999999999988
Q ss_pred CCCccccHHHHHHHHhhCCCcEEe
Q psy15212 277 SLWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
+ .++...+..+++++. ++..
T Consensus 156 ~---~~~~~~~~~~l~~~g-~~i~ 175 (204)
T 3njr_A 156 T---LESETLLTQLHARHG-GQLL 175 (204)
T ss_dssp S---HHHHHHHHHHHHHHC-SEEE
T ss_pred C---cccHHHHHHHHHhCC-CcEE
Confidence 6 356666666676653 4433
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=130.18 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=94.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.+|++|||+|||+|..+..+++. +++|+|+|+|+.+++.++++++..|+. ++++..|...+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~--------------- 83 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD--------------- 83 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG---------------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH---------------
Confidence 568999999999999999999987 679999999999999999999999986 888887776643
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc---ccHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE---ESEE 285 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~---Ene~ 285 (329)
.+ .++.||.|++++++-..+ ...+......+..+|+.+.+.|||||+++.+.++-++. |.+.
T Consensus 84 -~~-~~~~fD~v~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 148 (185)
T 3mti_A 84 -HY-VREPIRAAIFNLGYLPSA-------------DKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDA 148 (185)
T ss_dssp -GT-CCSCEEEEEEEEC------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHH
T ss_pred -hh-ccCCcCEEEEeCCCCCCc-------------chhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHH
Confidence 12 357899999987543110 11122223445678999999999999999988775543 3444
Q ss_pred HHHHHHhhC
Q psy15212 286 QAIIFSKNH 294 (329)
Q Consensus 286 vv~~~l~~~ 294 (329)
+..+++..
T Consensus 149 -~~~~~~~l 156 (185)
T 3mti_A 149 -VLEYVIGL 156 (185)
T ss_dssp -HHHHHHHS
T ss_pred -HHHHHHhC
Confidence 44445443
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-15 Score=128.27 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=108.9
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
+|.+ .++.....+...+.+.++++|||+|||+|..+..+++..+ .+|+++|+++.+++.+++|+++.|+. ++++.+|
T Consensus 20 ~g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d 98 (204)
T 3e05_A 20 KKLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF 98 (204)
T ss_dssp TTTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC
T ss_pred CCcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3666 4444445555667888999999999999999999999875 79999999999999999999999986 8999999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+.... .....||.|+++.+.. ...++++.+.++|+||
T Consensus 99 ~~~~~------------------~~~~~~D~i~~~~~~~-------------------------~~~~~l~~~~~~Lkpg 135 (204)
T 3e05_A 99 APEGL------------------DDLPDPDRVFIGGSGG-------------------------MLEEIIDAVDRRLKSE 135 (204)
T ss_dssp TTTTC------------------TTSCCCSEEEESCCTT-------------------------CHHHHHHHHHHHCCTT
T ss_pred hhhhh------------------hcCCCCCEEEECCCCc-------------------------CHHHHHHHHHHhcCCC
Confidence 86543 1225799999987632 1246899999999999
Q ss_pred CEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 269 GKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 269 G~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
|++++++++. ++.+.+...++++
T Consensus 136 G~l~~~~~~~---~~~~~~~~~l~~~ 158 (204)
T 3e05_A 136 GVIVLNAVTL---DTLTKAVEFLEDH 158 (204)
T ss_dssp CEEEEEECBH---HHHHHHHHHHHHT
T ss_pred eEEEEEeccc---ccHHHHHHHHHHC
Confidence 9999987653 4556666677766
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=137.12 Aligned_cols=162 Identities=15% Similarity=0.070 Sum_probs=116.7
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISK 191 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~ 191 (329)
++....++...++...++.+|||+|||+|..+..+++.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+.+
T Consensus 54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 133 (237)
T 3c3y_A 54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133 (237)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 3455566666666556678999999999999999999865 79999999999999999999999985 8999999876
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.. +.+. . .....+.||.|++|+++. .+..+++.+.++|+|||.+
T Consensus 134 ~l-~~l~--~--------~~~~~~~fD~I~~d~~~~-------------------------~~~~~l~~~~~~L~pGG~l 177 (237)
T 3c3y_A 134 AL-DNLL--Q--------GQESEGSYDFGFVDADKP-------------------------NYIKYHERLMKLVKVGGIV 177 (237)
T ss_dssp HH-HHHH--H--------STTCTTCEEEEEECSCGG-------------------------GHHHHHHHHHHHEEEEEEE
T ss_pred HH-HHHH--h--------ccCCCCCcCEEEECCchH-------------------------HHHHHHHHHHHhcCCCeEE
Confidence 42 0000 0 000146899999998754 1346788899999999999
Q ss_pred EEEcCCCC-----ccc-c-------HHHH---HHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEE
Q psy15212 272 LFVTCSLW-----FEE-S-------EEQA---IIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLF 324 (329)
Q Consensus 272 vysTCS~~-----~~E-n-------e~vv---~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l 324 (329)
++.+|.+. +++ + ...+ .+.+..++++.... +| ..||+++++-
T Consensus 178 v~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~-----lp------~~dG~~~~~~ 235 (237)
T 3c3y_A 178 AYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVH-----LP------LGDGITFCRR 235 (237)
T ss_dssp EEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEE-----EC------STTCEEEEEE
T ss_pred EEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEE-----EE------eCCceEEEEE
Confidence 99987544 211 2 1222 33345677766543 34 3589999864
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=140.07 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=98.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+++|++|||+|||+|++++.+|.....+|+|+|+|+..++.+++|++.+|+. ++++++|++++.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------------- 188 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------------- 188 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------------
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--------------
Confidence 5789999999999999999999876579999999999999999999999996 899999998875
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE-cC--CCCccccH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV-TC--SLWFEESE 284 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys-TC--S~~~~Ene 284 (329)
....||.|++|+|+++. ++|..|.++||+||.|.|. .+ .....+..
T Consensus 189 -----~~~~~D~Vi~~~p~~~~--------------------------~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~ 237 (278)
T 3k6r_A 189 -----GENIADRILMGYVVRTH--------------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPF 237 (278)
T ss_dssp -----CCSCEEEEEECCCSSGG--------------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTH
T ss_pred -----cccCCCEEEECCCCcHH--------------------------HHHHHHHHHcCCCCEEEEEeeecccccchhHH
Confidence 34789999999997732 3577888999999988653 22 22334445
Q ss_pred HHHHHHHhhC
Q psy15212 285 EQAIIFSKNH 294 (329)
Q Consensus 285 ~vv~~~l~~~ 294 (329)
+.++.+.+..
T Consensus 238 e~i~~~~~~~ 247 (278)
T 3k6r_A 238 ETFKRITKEY 247 (278)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6677776655
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=135.12 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=104.2
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHH---cCCc--eEEEecCcccc
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR---LNLK--ATLILSDISKI 192 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~---~g~~--v~~~~~D~~~~ 192 (329)
..+.+.+.++.+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++|++. +++. ++++++|+.+.
T Consensus 23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~ 102 (260)
T 2ozv_A 23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR 102 (260)
T ss_dssp CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence 4567777778888899999999999999999999876 6999999999999999999998 8885 89999999876
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
...... ..+..++||+|++|||+...+ -...++...... ..........+++.+.++|||||+++
T Consensus 103 ~~~~~~-----------~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a---~~~~~~~~~~~l~~~~~~LkpgG~l~ 167 (260)
T 2ozv_A 103 AKARVE-----------AGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEA---HAMTEGLFEDWIRTASAIMVSGGQLS 167 (260)
T ss_dssp HHHHHH-----------TTCCTTCEEEEEECCCC-------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhhh-----------hccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHH---hhcCcCCHHHHHHHHHHHcCCCCEEE
Confidence 200000 012356899999999998664 122232211100 00011124578999999999999998
Q ss_pred EEcCCCCccccHHHHHHHHhh
Q psy15212 273 FVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 273 ysTCS~~~~Ene~vv~~~l~~ 293 (329)
+.. +.+....+...+++
T Consensus 168 ~~~----~~~~~~~~~~~l~~ 184 (260)
T 2ozv_A 168 LIS----RPQSVAEIIAACGS 184 (260)
T ss_dssp EEE----CGGGHHHHHHHHTT
T ss_pred EEE----cHHHHHHHHHHHHh
Confidence 753 33333334444444
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-15 Score=132.05 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=99.5
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISK 191 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~ 191 (329)
.++.....+...++...++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.|+. ++++.+|+..
T Consensus 54 ~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (232)
T 3ntv_A 54 IVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE 133 (232)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred CcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence 34566666666677667788999999999999999998654 79999999999999999999999984 8999999987
Q ss_pred cchhhhhhhhccccccccc-ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 192 INLKKLYIDINKKTNNRFR-FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~-~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
.. . . ..++||+|++|+++.. +..+++.+.++|||||+
T Consensus 134 ~~----------------~~~-~~~~fD~V~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~ 171 (232)
T 3ntv_A 134 QF----------------ENV-NDKVYDMIFIDAAKAQ-------------------------SKKFFEIYTPLLKHQGL 171 (232)
T ss_dssp CH----------------HHH-TTSCEEEEEEETTSSS-------------------------HHHHHHHHGGGEEEEEE
T ss_pred HH----------------Hhh-ccCCccEEEEcCcHHH-------------------------HHHHHHHHHHhcCCCeE
Confidence 53 1 1 1468999999987541 34589999999999999
Q ss_pred EEEEcCCC
Q psy15212 271 LLFVTCSL 278 (329)
Q Consensus 271 lvysTCS~ 278 (329)
|++..+-+
T Consensus 172 lv~d~~~~ 179 (232)
T 3ntv_A 172 VITDNVLY 179 (232)
T ss_dssp EEEECTTG
T ss_pred EEEeeCCc
Confidence 99865443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=132.53 Aligned_cols=109 Identities=13% Similarity=0.198 Sum_probs=90.0
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhhhhhhcc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.++++.+|||+|||+|..+..+|+.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+.+..
T Consensus 53 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l---------- 122 (221)
T 3dr5_A 53 NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM---------- 122 (221)
T ss_dssp CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG----------
T ss_pred CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH----------
Confidence 344556999999999999999999764 79999999999999999999999985 899999987753
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
....+++||+|++|++... ..++++.+.++|||||.+++.++.+
T Consensus 123 ------~~~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 123 ------SRLANDSYQLVFGQVSPMD-------------------------LKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp ------GGSCTTCEEEEEECCCTTT-------------------------HHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred ------HHhcCCCcCeEEEcCcHHH-------------------------HHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 1123578999999976320 2347888999999999999988765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-16 Score=136.30 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=78.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..+..+++..+ .+++++|+++.+++.+++|+...+..++++.+|+.... ...
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~------------ 95 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWL-IER------------ 95 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHH-HHH------------
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhh-hhh------------
Confidence 6788999999999999999999875 59999999999999999999988877778888877632 000
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhH----HHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND----IKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~----~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~ 285 (329)
....++||+|++|||+...+.+...+.......+.. ...-.....++++.+.++|||||++++.++. ....+
T Consensus 96 -~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~ 171 (215)
T 4dzr_A 96 -AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---HNQAD 171 (215)
T ss_dssp -HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---TSCHH
T ss_pred -hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---CccHH
Confidence 001378999999999987766543222110000000 0001122367899999999999995555444 33445
Q ss_pred HHHHHHh
Q psy15212 286 QAIIFSK 292 (329)
Q Consensus 286 vv~~~l~ 292 (329)
.+..+++
T Consensus 172 ~~~~~l~ 178 (215)
T 4dzr_A 172 EVARLFA 178 (215)
T ss_dssp HHHHHTG
T ss_pred HHHHHHH
Confidence 5666666
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=137.58 Aligned_cols=153 Identities=15% Similarity=0.072 Sum_probs=111.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHH--cCC---ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR--LNL---KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~--~g~---~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.+.+|||+|||+|+.+..+++..+ .+|+++|+|+.+++.+++++.. .++ .++++.+|+....
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l------------ 157 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV------------ 157 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG------------
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH------------
Confidence 457999999999999999998755 7999999999999999999865 222 3899999987642
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCcccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEES 283 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~En 283 (329)
. ...++||+|++|+|+...|.. ... .+.++++.+.+.|+|||.+++.+|+ +..++.
T Consensus 158 ----~-~~~~~fD~Ii~d~~~~~~~~~----~~l-------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 215 (296)
T 1inl_A 158 ----R-KFKNEFDVIIIDSTDPTAGQG----GHL-------------FTEEFYQACYDALKEDGVFSAETEDPFYDIGWF 215 (296)
T ss_dssp ----G-GCSSCEEEEEEEC--------------C-------------CSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHH
T ss_pred ----h-hCCCCceEEEEcCCCcccCch----hhh-------------hHHHHHHHHHHhcCCCcEEEEEccCcccCHHHH
Confidence 1 124689999999987522210 000 1356889999999999999999988 556777
Q ss_pred HHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 284 EEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 284 e~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
..+++.+.+.++.+.........+| .+..||++|.
T Consensus 216 ~~~~~~l~~~F~~v~~~~~~vp~~p-----~g~~~f~~as 250 (296)
T 1inl_A 216 KLAYRRISKVFPITRVYLGFMTTYP-----SGMWSYTFAS 250 (296)
T ss_dssp HHHHHHHHHHCSEEEEEEEECTTST-----TSEEEEEEEE
T ss_pred HHHHHHHHHHCCceEEEEeecCccC-----CCceEEEEec
Confidence 8888888877776554432223344 3668898885
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=134.27 Aligned_cols=126 Identities=12% Similarity=0.087 Sum_probs=97.1
Q ss_pred EEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcc
Q psy15212 115 SIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDIS 190 (329)
Q Consensus 115 ~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~ 190 (329)
.++....++...++...++.+|||+|||+|..+..+++.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+.
T Consensus 62 ~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~ 141 (247)
T 1sui_A 62 TTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL 141 (247)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence 34556666666666666778999999999999999999864 79999999999999999999999984 899999987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
... +.+. . .....+.||.|++|+++. ....+++.+.++|+|||+
T Consensus 142 ~~l-~~l~--~--------~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~LkpGG~ 185 (247)
T 1sui_A 142 PVL-DEMI--K--------DEKNHGSYDFIFVDADKD-------------------------NYLNYHKRLIDLVKVGGV 185 (247)
T ss_dssp HHH-HHHH--H--------SGGGTTCBSEEEECSCST-------------------------THHHHHHHHHHHBCTTCC
T ss_pred HHH-HHHH--h--------ccCCCCCEEEEEEcCchH-------------------------HHHHHHHHHHHhCCCCeE
Confidence 642 0000 0 000146899999997632 124578889999999999
Q ss_pred EEEEcC
Q psy15212 271 LLFVTC 276 (329)
Q Consensus 271 lvysTC 276 (329)
|++.++
T Consensus 186 lv~d~~ 191 (247)
T 1sui_A 186 IGYDNT 191 (247)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 998764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=137.08 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=110.6
Q ss_pred ccccceEEEechhHHHHhhhc-CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEE
Q psy15212 108 KFFNGFCSIQDAAAQLAAPLL-DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-KATL 184 (329)
Q Consensus 108 ~~~~G~~~~Qd~~s~l~~~~l-~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~ 184 (329)
.|..++...|+..+.+..... ...+|.+|||+| |+|..+..++.... ++|+++|+++.+++.+++|++++|+ .+++
T Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~ 225 (373)
T 2qm3_A 147 EFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEI 225 (373)
T ss_dssp GGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred hcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE
Confidence 455667777777766664422 234688999999 99999999998765 7999999999999999999999998 4899
Q ss_pred EecCccc-cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 185 ILSDISK-INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 185 ~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
+.+|+.. ++ . ...+.||+|++||||+.. . ...+|+.+.+
T Consensus 226 ~~~D~~~~l~----------------~-~~~~~fD~Vi~~~p~~~~-------------------~----~~~~l~~~~~ 265 (373)
T 2qm3_A 226 FTFDLRKPLP----------------D-YALHKFDTFITDPPETLE-------------------A----IRAFVGRGIA 265 (373)
T ss_dssp ECCCTTSCCC----------------T-TTSSCBSEEEECCCSSHH-------------------H----HHHHHHHHHH
T ss_pred EEChhhhhch----------------h-hccCCccEEEECCCCchH-------------------H----HHHHHHHHHH
Confidence 9999987 43 1 013589999999998721 1 2678999999
Q ss_pred cCCCCC-EEEEEcCCCCccccH---HHHHHHHh-hC
Q psy15212 264 MLKPGG-KLLFVTCSLWFEESE---EQAIIFSK-NH 294 (329)
Q Consensus 264 ~LkpgG-~lvysTCS~~~~Ene---~vv~~~l~-~~ 294 (329)
.||||| .++|++|+ ..++. ..+..++. +.
T Consensus 266 ~LkpgG~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 299 (373)
T 2qm3_A 266 TLKGPRCAGYFGITR--RESSLDKWREIQKLLLNEF 299 (373)
T ss_dssp TBCSTTCEEEEEECT--TTCCHHHHHHHHHHHHHTS
T ss_pred HcccCCeEEEEEEec--CcCCHHHHHHHHHHHHHhc
Confidence 999999 55888886 23444 55666665 54
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=124.76 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+|.+|||+|||+|..+..+++....+|+|+|+|+.+++.+++|++.+++. ++++++|+.++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------------- 106 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVV---------------- 106 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHH----------------
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHH----------------
Confidence 578899999999999999888754469999999999999999999999985 899999988754
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh--cCCCCCEEEEEcCCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK--MLKPGGKLLFVTCSL 278 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~--~LkpgG~lvysTCS~ 278 (329)
.....+.||+|++|||+... . ....+++..+.+ +|+|||++++.+.+-
T Consensus 107 ~~~~~~~fD~i~~~~p~~~~--------------~-------~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 107 AAGTTSPVDLVLADPPYNVD--------------S-------ADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHCCSSCCSEEEECCCTTSC--------------H-------HHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred hhccCCCccEEEECCCCCcc--------------h-------hhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 11235789999999996521 1 123456777777 999999999987653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=126.60 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=92.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+++|.+|||+|||||+++..+++. +++|+|+|+++.. ... ++++.+|+..........
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~--------- 81 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDID--------- 81 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHH---------
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHH---------
Confidence 578999999999999999999987 6799999999852 223 789999988753100000
Q ss_pred ccccC---CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHH
Q psy15212 209 FRFYK---NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEE 285 (329)
Q Consensus 209 ~~~~~---~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~ 285 (329)
..+. .++||+|++|+++..+|.. ..+......++..+|+.+.++|||||+|+.. +...++..
T Consensus 82 -~~~~~~~~~~~D~Vlsd~~~~~~g~~-----------~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k---~~~~~~~~ 146 (191)
T 3dou_A 82 -RALREEGIEKVDDVVSDAMAKVSGIP-----------SRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK---QFQGDMTN 146 (191)
T ss_dssp -HHHHHHTCSSEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---EECSTHHH
T ss_pred -HHhhcccCCcceEEecCCCcCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHccCCCEEEEE---EcCCCCHH
Confidence 0011 1389999999998766652 1223344566788999999999999999954 44455666
Q ss_pred HHHHHHhhC
Q psy15212 286 QAIIFSKNH 294 (329)
Q Consensus 286 vv~~~l~~~ 294 (329)
.+.+.++.+
T Consensus 147 ~~~~~l~~~ 155 (191)
T 3dou_A 147 DFIAIWRKN 155 (191)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHh
Confidence 667777664
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-15 Score=130.17 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=95.3
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISK 191 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~ 191 (329)
++.....+...++...++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.++. ++++.+|+..
T Consensus 40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 119 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG 119 (210)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence 3444555555555445678999999999999999998764 79999999999999999999999884 8999999876
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.. +. ..+ ||.|++|+++. .+..+++.+.++|+|||++
T Consensus 120 ~~----------------~~-~~~-fD~v~~~~~~~-------------------------~~~~~l~~~~~~LkpgG~l 156 (210)
T 3c3p_A 120 IA----------------AG-QRD-IDILFMDCDVF-------------------------NGADVLERMNRCLAKNALL 156 (210)
T ss_dssp HH----------------TT-CCS-EEEEEEETTTS-------------------------CHHHHHHHHGGGEEEEEEE
T ss_pred Hh----------------cc-CCC-CCEEEEcCChh-------------------------hhHHHHHHHHHhcCCCeEE
Confidence 42 11 235 99999996533 1346789999999999999
Q ss_pred EEEcCCCC
Q psy15212 272 LFVTCSLW 279 (329)
Q Consensus 272 vysTCS~~ 279 (329)
++.++.+.
T Consensus 157 v~~~~~~~ 164 (210)
T 3c3p_A 157 IAVNALRR 164 (210)
T ss_dssp EEESSSSC
T ss_pred EEECcccc
Confidence 99876543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-15 Score=128.02 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--c-eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--K-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
++.+|||+|||+|..+..++.....+|+|+|+|+.+++.+++|++..|+ . ++++.+|+....
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~--------------- 117 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL--------------- 117 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT---------------
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH---------------
Confidence 6789999999999999987776446999999999999999999999998 4 899999987653
Q ss_pred ccccCCCC-CCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH--HhcCCCCCEEEEEcCCCC
Q psy15212 209 FRFYKNKY-FDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL--WKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 209 ~~~~~~~~-fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpgG~lvysTCS~~ 279 (329)
....++. ||+|++|||+. .+. ..++++.+ .++|+|||.+++++|+..
T Consensus 118 -~~~~~~~~fD~I~~~~~~~-~~~----------------------~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 118 -KQPQNQPHFDVVFLDPPFH-FNL----------------------AEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp -TSCCSSCCEEEEEECCCSS-SCH----------------------HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred -HhhccCCCCCEEEECCCCC-Ccc----------------------HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 1112467 99999999953 111 12345555 678999999999998765
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=126.39 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=106.1
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+.++.+|||+|||+|..+..++...+ .+|+|+|+|+.+++.++++++++|+. ++++++|+.++..
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------ 134 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ------------ 134 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTT------------
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcc------------
Confidence 345688999999999999999997655 79999999999999999999999986 8999999876540
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....+.||.|++++.. ....+++.+.++|+|||++++..+....+|-++.
T Consensus 135 ---~~~~~~~fD~V~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~ 185 (240)
T 1xdz_A 135 ---RKDVRESYDIVTARAVA--------------------------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAG 185 (240)
T ss_dssp ---CTTTTTCEEEEEEECCS--------------------------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHH
T ss_pred ---cccccCCccEEEEeccC--------------------------CHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHH
Confidence 00014689999986520 0346899999999999999998777655444333
Q ss_pred HHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 287 v~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
...++.+ ++.........+|. .....++..++|.
T Consensus 186 -~~~l~~~-g~~~~~~~~~~~~~-----~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 186 -KKAITTL-GGELENIHSFKLPI-----EESDRNIMVIRKI 219 (240)
T ss_dssp -HHHHHHT-TEEEEEEEEEECTT-----TCCEEEEEEEEEC
T ss_pred -HHHHHHc-CCeEeEEEEEecCC-----CCCceEEEEEEec
Confidence 3445554 45544322122342 2234555556654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=127.89 Aligned_cols=161 Identities=18% Similarity=0.122 Sum_probs=114.0
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccc
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISK 191 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~ 191 (329)
++.....+...++...++.+|||+|||+|..+.++++.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+..
T Consensus 48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (225)
T 3tr6_A 48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence 4455566666666666788999999999999999998764 79999999999999999999999985 8999999865
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.. +.+. .....+.||.|++|++.. .+..+++.+.++|+|||+|
T Consensus 128 ~~-~~~~-----------~~~~~~~fD~v~~~~~~~-------------------------~~~~~l~~~~~~L~pgG~l 170 (225)
T 3tr6_A 128 TL-AELI-----------HAGQAWQYDLIYIDADKA-------------------------NTDLYYEESLKLLREGGLI 170 (225)
T ss_dssp HH-HHHH-----------TTTCTTCEEEEEECSCGG-------------------------GHHHHHHHHHHHEEEEEEE
T ss_pred HH-HHhh-----------hccCCCCccEEEECCCHH-------------------------HHHHHHHHHHHhcCCCcEE
Confidence 42 0000 000116899999998732 1345788999999999999
Q ss_pred EEEcCCCCcc----c----cHHHHHHHH---hhCCCcEEecCCCcccCCCCCCCCCCeEEEEEE
Q psy15212 272 LFVTCSLWFE----E----SEEQAIIFS---KNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLF 324 (329)
Q Consensus 272 vysTCS~~~~----E----ne~vv~~~l---~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l 324 (329)
++..+.+... + ....+..|. ..++++.... +| ..||+.+++-
T Consensus 171 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----lp------~~dG~~~~~k 223 (225)
T 3tr6_A 171 AVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMIL-----IP------IGDGLTLARK 223 (225)
T ss_dssp EEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE-----EC------STTCEEEEEE
T ss_pred EEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEE-----EE------cCCccEEEEE
Confidence 9876654321 1 122344443 3455655433 23 4589988863
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=121.47 Aligned_cols=137 Identities=17% Similarity=0.192 Sum_probs=104.9
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchh
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLK 195 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~ 195 (329)
..+......+...++.+|||+|||+|..+..+++. +.+++++|+++.+++.+++++...++. ++++.+|+....
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 115 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-- 115 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc--
Confidence 45566666777788999999999999999999987 679999999999999999999998885 889999987643
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.||.|++++|... .. .....+++.+.++|+|||++++++
T Consensus 116 -----------------~~~~~D~v~~~~~~~~--------------~~-------~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 116 -----------------KDRKYNKIITNPPIRA--------------GK-------EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp -----------------TTSCEEEEEECCCSTT--------------CH-------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------ccCCceEEEECCCccc--------------ch-------hHHHHHHHHHHHHcCCCCEEEEEE
Confidence 3468999999988541 01 123568899999999999999987
Q ss_pred CCCCccccHHHHHHHHhhCCCcE
Q psy15212 276 CSLWFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 276 CS~~~~Ene~vv~~~l~~~~~~~ 298 (329)
++. ...++..+.+-+....++
T Consensus 158 ~~~--~~~~~~~~~l~~~~~~~~ 178 (194)
T 1dus_A 158 QTK--QGAKSLAKYMKDVFGNVE 178 (194)
T ss_dssp EST--HHHHHHHHHHHHHHSCCE
T ss_pred CCC--CChHHHHHHHHHHhcceE
Confidence 753 233334444433333333
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=124.26 Aligned_cols=136 Identities=22% Similarity=0.273 Sum_probs=100.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhhhhhhhccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.+++|++|||+|||+|..+..+++..+ ++|+|+|+++.+++.++++++..|+ . ++++.+|+..+.
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 87 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD----------- 87 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG-----------
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh-----------
Confidence 467889999999999999999999853 6999999999999999999999998 3 899999988764
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc--c
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE--E 282 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~--E 282 (329)
. ..++.||.|++|+|.-..+ +.......+ ...++++.+.++|||||++++++++-++. +
T Consensus 88 -----~-~~~~~fD~v~~~~~~~~~~------~~~~~~~~~-------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~ 148 (197)
T 3eey_A 88 -----K-YIDCPVKAVMFNLGYLPSG------DHSISTRPE-------TTIQALSKAMELLVTGGIITVVIYYGGDTGFE 148 (197)
T ss_dssp -----G-TCCSCEEEEEEEESBCTTS------CTTCBCCHH-------HHHHHHHHHHHHEEEEEEEEEEECCBTTTBSH
T ss_pred -----h-hccCCceEEEEcCCcccCc------ccccccCcc-------cHHHHHHHHHHhCcCCCEEEEEEccCCCCcHH
Confidence 1 1347899999999862111 000111111 23458999999999999999887654432 2
Q ss_pred cHHHHHHHHhhC
Q psy15212 283 SEEQAIIFSKNH 294 (329)
Q Consensus 283 ne~vv~~~l~~~ 294 (329)
....+..+++..
T Consensus 149 ~~~~~~~~~~~l 160 (197)
T 3eey_A 149 EKEKVLEFLKGV 160 (197)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhC
Confidence 334455566544
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=129.14 Aligned_cols=102 Identities=19% Similarity=0.275 Sum_probs=82.9
Q ss_pred ceEEEech--hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEec
Q psy15212 112 GFCSIQDA--AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILS 187 (329)
Q Consensus 112 G~~~~Qd~--~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~ 187 (329)
|++..+.. ...++..+....++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.+++|++..|+ .++++++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 134 (241)
T 3gdh_A 56 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICG 134 (241)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred ceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC
Confidence 44433443 45555555555578999999999999999999864 6999999999999999999999998 3899999
Q ss_pred CccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccc
Q psy15212 188 DISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 188 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
|+..+. ..+.||+|++||||.+.+...
T Consensus 135 d~~~~~-------------------~~~~~D~v~~~~~~~~~~~~~ 161 (241)
T 3gdh_A 135 DFLLLA-------------------SFLKADVVFLSPPWGGPDYAT 161 (241)
T ss_dssp CHHHHG-------------------GGCCCSEEEECCCCSSGGGGG
T ss_pred ChHHhc-------------------ccCCCCEEEECCCcCCcchhh
Confidence 988764 246899999999999876654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-15 Score=143.68 Aligned_cols=141 Identities=19% Similarity=0.090 Sum_probs=103.1
Q ss_pred ccceE-EEechhHHHHhhh---cCC--CCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 110 FNGFC-SIQDAAAQLAAPL---LDI--RSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 110 ~~G~~-~~Qd~~s~l~~~~---l~~--~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..|+| ..|.....+...+ +.. ++|.+|||+|||+|++++.+|...+ .+|+++|+++.+++.+++|++.+|+.
T Consensus 24 ~~~Ffn~~~~~nR~l~~~~~~~~~~~~~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~ 103 (392)
T 3axs_A 24 MPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP 103 (392)
T ss_dssp CCSSCCGGGHHHHHHHHHHHHHHHHHHCSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEcCCcHHHHHHHHHHHHHHhhccCCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 34444 2455555554322 222 5789999999999999999998754 59999999999999999999999984
Q ss_pred ---eEEEecCccccchhhhhhhhccccccccc-ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH
Q psy15212 182 ---ATLILSDISKINLKKLYIDINKKTNNRFR-FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 182 ---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
++++.+|+..+. . .. .+.||+|++||+|+. ..+
T Consensus 104 ~~~v~v~~~Da~~~l----------------~~~~-~~~fD~V~lDP~g~~--------------------------~~~ 140 (392)
T 3axs_A 104 EDRYEIHGMEANFFL----------------RKEW-GFGFDYVDLDPFGTP--------------------------VPF 140 (392)
T ss_dssp GGGEEEECSCHHHHH----------------HSCC-SSCEEEEEECCSSCC--------------------------HHH
T ss_pred CceEEEEeCCHHHHH----------------HHhh-CCCCcEEEECCCcCH--------------------------HHH
Confidence 889999987753 1 11 357999999997541 247
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 258 LNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
++.|.++|++|| ++|+||+-........+...+.+|
T Consensus 141 l~~a~~~Lk~gG-ll~~t~t~~~~l~g~~~~~~~rkY 176 (392)
T 3axs_A 141 IESVALSMKRGG-ILSLTATDTAPLSGTYPKTCMRRY 176 (392)
T ss_dssp HHHHHHHEEEEE-EEEEEECCHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCC-EEEEEecchhhhccccHHHHHHHh
Confidence 889999999999 778889765532222233444444
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=128.93 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=91.5
Q ss_pred HHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 121 AQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 121 s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|.|++.++ .++||++|||+|||+|..+.++|+..+ |+|+|+|+++.+++.+++++++.+ .+..+.+|+..+
T Consensus 60 sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~-ni~~V~~d~~~p 138 (233)
T 4df3_A 60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR-NIFPILGDARFP 138 (233)
T ss_dssp CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT-TEEEEESCTTCG
T ss_pred hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc-CeeEEEEeccCc
Confidence 56666554 489999999999999999999999876 899999999999999999887653 377788888775
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
.. .......+|.|++|.+... ....++.++.++|||||+++
T Consensus 139 ~~---------------~~~~~~~vDvVf~d~~~~~------------------------~~~~~l~~~~r~LKpGG~lv 179 (233)
T 4df3_A 139 EK---------------YRHLVEGVDGLYADVAQPE------------------------QAAIVVRNARFFLRDGGYML 179 (233)
T ss_dssp GG---------------GTTTCCCEEEEEECCCCTT------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred cc---------------cccccceEEEEEEeccCCh------------------------hHHHHHHHHHHhccCCCEEE
Confidence 41 0123468999999987541 12357899999999999999
Q ss_pred EEc
Q psy15212 273 FVT 275 (329)
Q Consensus 273 ysT 275 (329)
.+.
T Consensus 180 I~i 182 (233)
T 4df3_A 180 MAI 182 (233)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=132.88 Aligned_cols=107 Identities=19% Similarity=0.242 Sum_probs=89.2
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+..+.+|++|||+|||+|..+..+|...+ ++|+|+|+++.+++.+++|++.+|+. +.++.+|+....
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~----------- 182 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE----------- 182 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-----------
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-----------
Confidence 33467899999999999999999999865 69999999999999999999999986 889999988653
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
..+.||.|++|||.. ..+++..+.+.|+|||+++++ |...
T Consensus 183 --------~~~~~D~Vi~d~p~~--------------------------~~~~l~~~~~~LkpgG~l~~s-~~~~ 222 (272)
T 3a27_A 183 --------LKDVADRVIMGYVHK--------------------------THKFLDKTFEFLKDRGVIHYH-ETVA 222 (272)
T ss_dssp --------CTTCEEEEEECCCSS--------------------------GGGGHHHHHHHEEEEEEEEEE-EEEE
T ss_pred --------ccCCceEEEECCccc--------------------------HHHHHHHHHHHcCCCCEEEEE-EcCc
Confidence 146799999999951 123688888999999988755 5544
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=135.69 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=114.0
Q ss_pred ceEEEechhHHHHhhhc----CCCCCCeEEeecCCCchHHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 112 GFCSIQDAAAQLAAPLL----DIRSGMYVLDACSAPGGKTCHLLEIAD------IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l----~~~~g~~VLDlcag~G~kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
|.++-.+.-..+...++ .+.++.+|||+|||+|+.+..+++.++ ..++|+|+++.+++.++.|+...|+.
T Consensus 106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~ 185 (344)
T 2f8l_A 106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK 185 (344)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC
Confidence 44444344444434333 566788999999999999999988753 58999999999999999999988888
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCC-CCcccCChhHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNP-DIPWLRRKNDIKKLSKYSCKILNN 260 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p-~~~~~~~~~~~~~l~~~q~~lL~~ 260 (329)
+.++.+|+.... ....||+|++|||++. +.... ...|.... .......+..++.+
T Consensus 186 ~~i~~~D~l~~~-------------------~~~~fD~Ii~NPPfg~---~~~~~~~~~~~~~~--~~g~~~~~~~~l~~ 241 (344)
T 2f8l_A 186 MTLLHQDGLANL-------------------LVDPVDVVISDLPVGY---YPDDENAKTFELCR--EEGHSFAHFLFIEQ 241 (344)
T ss_dssp CEEEESCTTSCC-------------------CCCCEEEEEEECCCSE---ESCHHHHTTSTTCC--SSSCEEHHHHHHHH
T ss_pred ceEEECCCCCcc-------------------ccCCccEEEECCCCCC---cCchhhhhhccccC--CCCcchHHHHHHHH
Confidence 889999987643 2468999999999742 21100 00111000 00011235568999
Q ss_pred HHhcCCCCCEEEEEc-CCCCccccHHHHHHHHhhCCCcE-EecCCCcccCC
Q psy15212 261 LWKMLKPGGKLLFVT-CSLWFEESEEQAIIFSKNHKDSI-RLNSPGQLLPT 309 (329)
Q Consensus 261 a~~~LkpgG~lvysT-CS~~~~Ene~vv~~~l~~~~~~~-~~~~~~~~~p~ 309 (329)
+.+.|+|||++++.+ .++...+....+...+.++.... .+..+..+++.
T Consensus 242 ~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp~~~F~~ 292 (344)
T 2f8l_A 242 GMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPETLFKS 292 (344)
T ss_dssp HHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCGGGSCC
T ss_pred HHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCChhhccC
Confidence 999999999999887 33334444555555554432222 24445555554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=135.51 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=98.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc-
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR- 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~- 210 (329)
|++|||+|||+|.+++.+|... .+|+|+|+++.+++.+++|++.+|+. ++++.+|+.+.. +.+. .+.. -.++.
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~-~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~-~~~~--~~~~-~~~l~~ 288 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF-DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT-QAMN--GVRE-FNRLQG 288 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS-SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH-HHHS--SCCC-CTTGGG
T ss_pred CCEEEEccCCCCHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH-HHHh--hccc-cccccc
Confidence 6789999999999999999743 59999999999999999999999986 899999987652 0000 0000 00000
Q ss_pred -ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 211 -FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 211 -~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
......||+|++|||+.|. ...+.+.|+++|+++|.+|+.. .-..-+..
T Consensus 289 ~~~~~~~fD~Vv~dPPr~g~----------------------------~~~~~~~l~~~g~ivyvsc~p~--t~ard~~~ 338 (369)
T 3bt7_A 289 IDLKSYQCETIFVDPPRSGL----------------------------DSETEKMVQAYPRILYISCNPE--TLCKNLET 338 (369)
T ss_dssp SCGGGCCEEEEEECCCTTCC----------------------------CHHHHHHHTTSSEEEEEESCHH--HHHHHHHH
T ss_pred cccccCCCCEEEECcCcccc----------------------------HHHHHHHHhCCCEEEEEECCHH--HHHHHHHH
Confidence 0001379999999998742 2234455679999999999632 22222333
Q ss_pred HHhhCCCcEEecC-CCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 290 FSKNHKDSIRLNS-PGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 290 ~l~~~~~~~~~~~-~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
+.+. +.+... +...+|++ +..+- +|+|+|
T Consensus 339 l~~~---y~~~~~~~~D~FP~T---~HvE~--v~ll~r 368 (369)
T 3bt7_A 339 LSQT---HKVERLALFDQFPYT---HHMQC--GVLLTA 368 (369)
T ss_dssp HHHH---EEEEEEEEECCSTTS---SCCEE--EEEEEE
T ss_pred HhhC---cEEEEEEeeccCCCC---CcEEE--EEEEEe
Confidence 3332 333222 23457876 33332 666665
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=123.34 Aligned_cols=128 Identities=22% Similarity=0.276 Sum_probs=99.9
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
......+...+++.+|.+|||+|||+|..+.++++.+ +++|+++|+++.+++.++++++..|+. ++++.+|+....
T Consensus 79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 158 (255)
T 3mb5_A 79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI 158 (255)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence 3344556667788999999999999999999999983 279999999999999999999999985 899999987542
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
..+.||.|++|+|+. ..+++++.+.|+|||+++.
T Consensus 159 -------------------~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~ 192 (255)
T 3mb5_A 159 -------------------EEENVDHVILDLPQP---------------------------ERVVEHAAKALKPGGFFVA 192 (255)
T ss_dssp -------------------CCCSEEEEEECSSCG---------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred -------------------CCCCcCEEEECCCCH---------------------------HHHHHHHHHHcCCCCEEEE
Confidence 356799999998844 1368889999999999986
Q ss_pred EcCCCCccccHHHHHHHHhhC
Q psy15212 274 VTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 274 sTCS~~~~Ene~vv~~~l~~~ 294 (329)
.+-+ .+....+...++++
T Consensus 193 ~~~~---~~~~~~~~~~l~~~ 210 (255)
T 3mb5_A 193 YTPC---SNQVMRLHEKLREF 210 (255)
T ss_dssp EESS---HHHHHHHHHHHHHT
T ss_pred EECC---HHHHHHHHHHHHHc
Confidence 5422 22333344455554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-14 Score=117.66 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=100.6
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D 188 (329)
|.+..++... .+...+.+.++++|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...|+. + ++.+|
T Consensus 6 g~~t~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d 83 (178)
T 3hm2_A 6 GQLTKQHVRA-LAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQG 83 (178)
T ss_dssp CCSHHHHHHH-HHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECC
T ss_pred CcccHHHHHH-HHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecc
Confidence 4444344333 334455788899999999999999999998865 79999999999999999999999886 6 77888
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+...- . ...+.||.|+++.+... ..+++.+.++|+||
T Consensus 84 ~~~~~----------------~-~~~~~~D~i~~~~~~~~--------------------------~~~l~~~~~~L~~g 120 (178)
T 3hm2_A 84 APRAF----------------D-DVPDNPDVIFIGGGLTA--------------------------PGVFAAAWKRLPVG 120 (178)
T ss_dssp TTGGG----------------G-GCCSCCSEEEECC-TTC--------------------------TTHHHHHHHTCCTT
T ss_pred hHhhh----------------h-ccCCCCCEEEECCcccH--------------------------HHHHHHHHHhcCCC
Confidence 75421 1 11268999997665320 34789999999999
Q ss_pred CEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 269 GKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 269 G~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
|++++++++. ++...+..+++++
T Consensus 121 G~l~~~~~~~---~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 121 GRLVANAVTV---ESEQMLWALRKQF 143 (178)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHH
T ss_pred CEEEEEeecc---ccHHHHHHHHHHc
Confidence 9999988763 4445555666655
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=123.60 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=97.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..++.+|||+|||+|..++.+|...+ .+|+++|+++.+++.+++|++++|+. ++++++|+.++..
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~------------- 144 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR------------- 144 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT-------------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc-------------
Confidence 35788999999999999999998866 79999999999999999999999996 9999999887540
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv 287 (329)
.....++||.|++.+-. + ...+++.+.++|||||++++..+....+|-++ +
T Consensus 145 --~~~~~~~fD~I~s~a~~-------------------~-------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~-~ 195 (249)
T 3g89_A 145 --EAGHREAYARAVARAVA-------------------P-------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAP-L 195 (249)
T ss_dssp --STTTTTCEEEEEEESSC-------------------C-------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTT-H
T ss_pred --ccccCCCceEEEECCcC-------------------C-------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHH-H
Confidence 00013689999975310 0 23578999999999999998877755544433 3
Q ss_pred HHHHhhCCCcEEe
Q psy15212 288 IIFSKNHKDSIRL 300 (329)
Q Consensus 288 ~~~l~~~~~~~~~ 300 (329)
...++.. ++...
T Consensus 196 ~~~l~~~-G~~~~ 207 (249)
T 3g89_A 196 PPALERL-GGRLG 207 (249)
T ss_dssp HHHHHHH-TEEEE
T ss_pred HHHHHHc-CCeEE
Confidence 3444444 44433
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=125.62 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=112.2
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
+.....+...++...++.+|||+|||+|..+..+++.++ ++|+++|+++.+++.+++++++.|+. ++++.+|+...
T Consensus 57 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 136 (232)
T 3cbg_A 57 SPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT 136 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 344445555555555678999999999999999998764 69999999999999999999999984 89999998653
Q ss_pred chhhhhhhhcccccccccccCC--CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKN--KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~--~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
. +.+ . ..+ +.||.|++|++.. ....+++.+.++|+|||+
T Consensus 137 l-~~l------------~-~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~LkpgG~ 177 (232)
T 3cbg_A 137 L-EQL------------T-QGKPLPEFDLIFIDADKR-------------------------NYPRYYEIGLNLLRRGGL 177 (232)
T ss_dssp H-HHH------------H-TSSSCCCEEEEEECSCGG-------------------------GHHHHHHHHHHTEEEEEE
T ss_pred H-HHH------------H-hcCCCCCcCEEEECCCHH-------------------------HHHHHHHHHHHHcCCCeE
Confidence 2 000 0 112 6899999997632 124578899999999999
Q ss_pred EEEEcCCCCc--------cccHHHHHHHHh---hCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 271 LLFVTCSLWF--------EESEEQAIIFSK---NHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 271 lvysTCS~~~--------~Ene~vv~~~l~---~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
+++.++.+.. .+....+..|.+ .++.+... ++| ..|||.+++
T Consensus 178 lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp------~~dG~~~~~ 230 (232)
T 3cbg_A 178 MVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRIS-----VIP------LGDGMTLAL 230 (232)
T ss_dssp EEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEE-----EEC------SBTCEEEEE
T ss_pred EEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEE-----EEE------cCCeEEEEE
Confidence 9998887642 223344555543 34554432 234 348988875
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=120.26 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=102.6
Q ss_pred hHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhh
Q psy15212 120 AAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKK 196 (329)
Q Consensus 120 ~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~ 196 (329)
........+. +.++.+|||+|||+|..+..+++....+|+++|+++.+++.+++++...++. ++++.+|+....
T Consensus 46 ~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 122 (205)
T 3grz_A 46 TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--- 122 (205)
T ss_dssp HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---
T ss_pred cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---
Confidence 3444444444 6688999999999999999988753369999999999999999999999987 899999987643
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+.||.|+++++.. ....+++.+.++|+|||++++++.
T Consensus 123 -----------------~~~fD~i~~~~~~~-------------------------~~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 123 -----------------DGKFDLIVANILAE-------------------------ILLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp -----------------CSCEEEEEEESCHH-------------------------HHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred -----------------CCCceEEEECCcHH-------------------------HHHHHHHHHHHhcCCCCEEEEEec
Confidence 46899999987621 135689999999999999998754
Q ss_pred CCCccccHHHHHHHHhhCCCcEEec
Q psy15212 277 SLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 277 S~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
. .+..+.+...+++. +++.+.
T Consensus 161 ~---~~~~~~~~~~~~~~-Gf~~~~ 181 (205)
T 3grz_A 161 D---YLQLPKIEQALAEN-SFQIDL 181 (205)
T ss_dssp E---GGGHHHHHHHHHHT-TEEEEE
T ss_pred C---cccHHHHHHHHHHc-CCceEE
Confidence 3 23445566666665 566554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=132.42 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc----eEEEecCccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK----ATLILSDISK 191 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~----v~~~~~D~~~ 191 (329)
.|..+.+....+...++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++|++.+|+. ++++.+|+..
T Consensus 207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 286 (375)
T ss_dssp CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence 344566677777777789999999999999999999875 79999999999999999999999864 6779999876
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.. .+++||.|++|||+.....+. . ....++++.+.+.|||||++
T Consensus 287 ~~-------------------~~~~fD~Ii~nppfh~~~~~~-----------~------~~~~~~l~~~~~~LkpgG~l 330 (375)
T 4dcm_A 287 GV-------------------EPFRFNAVLCNPPFHQQHALT-----------D------NVAWEMFHHARRCLKINGEL 330 (375)
T ss_dssp TC-------------------CTTCEEEEEECCCC------------------C------CHHHHHHHHHHHHEEEEEEE
T ss_pred cC-------------------CCCCeeEEEECCCcccCcccC-----------H------HHHHHHHHHHHHhCCCCcEE
Confidence 32 456899999999975311110 0 01236899999999999999
Q ss_pred EEEcCCCCc
Q psy15212 272 LFVTCSLWF 280 (329)
Q Consensus 272 vysTCS~~~ 280 (329)
++++-+..+
T Consensus 331 ~iv~n~~~~ 339 (375)
T 4dcm_A 331 YIVANRHLD 339 (375)
T ss_dssp EEEEETTSC
T ss_pred EEEEECCcC
Confidence 997655444
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=120.61 Aligned_cols=116 Identities=16% Similarity=0.304 Sum_probs=90.8
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..+++..+ ..++|+|+++.+++.+++++.+.|+. ++++.+|+..+.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~--------------- 104 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT--------------- 104 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG---------------
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH---------------
Confidence 4678999999999999999999876 79999999999999999999999986 899999998754
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+..+.||.|++++|.. |......... ..+..+++.+.++|+|||.++++|-
T Consensus 105 -~~~~~~~~D~i~~~~~~~------------~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 105 -DYFEDGEIDRLYLNFSDP------------WPKKRHEKRR--LTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp -GTSCTTCCSEEEEESCCC------------CCSGGGGGGS--TTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred -hhcCCCCCCEEEEECCCC------------ccccchhhhc--cCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 223456899999997732 1110000000 0246789999999999999998753
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-14 Score=122.86 Aligned_cols=116 Identities=13% Similarity=0.249 Sum_probs=90.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..+|+..+ ..|+|+|+|+.+++.+++++++.|+. ++++.+|+..+.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~--------------- 101 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT--------------- 101 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH---------------
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH---------------
Confidence 4578999999999999999999876 79999999999999999999999986 899999998753
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+..+.||.|+++.|.. |.........+ .+..+|+.+.++|||||.|+++|-
T Consensus 102 -~~~~~~~~d~v~~~~~~p------------~~~~~~~~~rl--~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 102 -DVFEPGEVKRVYLNFSDP------------WPKKRHEKRRL--TYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp -HHCCTTSCCEEEEESCCC------------CCSGGGGGGST--TSHHHHHHHHHHHTTSCEEEEEES
T ss_pred -hhcCcCCcCEEEEECCCC------------CcCcccccccc--CcHHHHHHHHHHcCCCCEEEEEeC
Confidence 223456899999876532 11110000000 246789999999999999998863
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=117.58 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=95.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+.++.+|||+|||+|..+..+++....+|+|+|+++.+++.+++|++..++.++++.+|+..++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------------- 110 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN--------------- 110 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---------------
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---------------
Confidence 45678999999999999999999863368999999999999999999998888899999987753
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
..||.|++|||+.... +. ....+|+.+.+.+ || +|+.| +.+.++.+.+.
T Consensus 111 ------~~~D~v~~~~p~~~~~---~~-----------------~~~~~l~~~~~~l--~~--~~~~~-~~~~~~~~~~~ 159 (207)
T 1wy7_A 111 ------SRVDIVIMNPPFGSQR---KH-----------------ADRPFLLKAFEIS--DV--VYSIH-LAKPEVRRFIE 159 (207)
T ss_dssp ------CCCSEEEECCCCSSSS---TT-----------------TTHHHHHHHHHHC--SE--EEEEE-ECCHHHHHHHH
T ss_pred ------CCCCEEEEcCCCcccc---CC-----------------chHHHHHHHHHhc--Cc--EEEEE-eCCcCCHHHHH
Confidence 4799999999976221 00 1234677788777 43 66667 33556777788
Q ss_pred HHHhhCCCcE
Q psy15212 289 IFSKNHKDSI 298 (329)
Q Consensus 289 ~~l~~~~~~~ 298 (329)
.+++++ ++.
T Consensus 160 ~~l~~~-g~~ 168 (207)
T 1wy7_A 160 KFSWEH-GFV 168 (207)
T ss_dssp HHHHHT-TEE
T ss_pred HHHHHC-CCe
Confidence 888776 444
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-14 Score=122.45 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=84.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
++.+|||+|||+|..+..+++....+|+++|+|+.+++.+++|++..++. ++++.+|+.... .
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~----------------~ 117 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----------------A 117 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----------------S
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH----------------h
Confidence 67899999999999999887764469999999999999999999999984 899999987642 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH--HhcCCCCCEEEEEcCCCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL--WKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpgG~lvysTCS~~ 279 (329)
...+.||+|++|||+. .+. ..++++.. .++|+|||++++++|+..
T Consensus 118 -~~~~~fD~V~~~~p~~-~~~----------------------~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 118 -QKGTPHNIVFVDPPFR-RGL----------------------LEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp -SCCCCEEEEEECCSSS-TTT----------------------HHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred -hcCCCCCEEEECCCCC-CCc----------------------HHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 1346899999999943 110 12234444 346999999999988643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=123.01 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=92.3
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+.++.+|||+|||+|..+..+++..+++|+|+|+|+.+++.+++++...|+. ++++.+|+..++
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------- 109 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP------------- 109 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-------------
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-------------
Confidence 56788999999999999999999987779999999999999999999999986 899999997765
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
+.++.||+|++..... . . . ..++|+.+.++|||||+++++++++..
T Consensus 110 -----~~~~~fD~v~~~~~l~------~------~-~----------~~~~l~~~~~~L~pgG~l~~~~~~~~~ 155 (257)
T 3f4k_A 110 -----FQNEELDLIWSEGAIY------N------I-G----------FERGMNEWSKYLKKGGFIAVSEASWFT 155 (257)
T ss_dssp -----SCTTCEEEEEEESCSC------C------C-C----------HHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred -----CCCCCEEEEEecChHh------h------c-C----------HHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 3457899999764322 1 0 1 235799999999999999999865433
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=117.40 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=86.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..++.+|||+|||+|..+..+++....+|+++|+++.+++.++++++..++. ++++.+|+.+..
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------------- 94 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI-------------- 94 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH--------------
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH--------------
Confidence 5678899999999999999999873369999999999999999999999985 899999987742
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH--HhcCCCCCEEEEEcCCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL--WKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpgG~lvysTCS~~ 279 (329)
. ...+.||+|++|||+.. + . ..++++.. .++|+|||++++++++-.
T Consensus 95 --~-~~~~~fD~i~~~~~~~~-~------------------~----~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 95 --D-CLTGRFDLVFLDPPYAK-E------------------T----IVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp --H-HBCSCEEEEEECCSSHH-H------------------H----HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred --H-hhcCCCCEEEECCCCCc-c------------------h----HHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 1 12357999999999641 0 0 12233333 489999999999887644
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=130.42 Aligned_cols=129 Identities=17% Similarity=0.117 Sum_probs=99.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..++.+|||+|||+|+.+..++.... ++|+|+|+|+.+++.+++|++..|+ .+++.++|+.+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~------------- 281 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS------------- 281 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-------------
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-------------
Confidence 67899999999999999999998755 5999999999999999999999999 3899999998875
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
...+.||+|++|||+.-. ......+..++.++++.+.+.| ||.++|.||+ .+.
T Consensus 282 -----~~~~~fD~Ii~npPyg~r--------------~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~------~~~ 334 (373)
T 3tm4_A 282 -----QYVDSVDFAISNLPYGLK--------------IGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE------KKA 334 (373)
T ss_dssp -----GTCSCEEEEEEECCCC--------------------CCHHHHHHHHHHHHHHHE--EEEEEEEESC------HHH
T ss_pred -----cccCCcCEEEECCCCCcc--------------cCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC------HHH
Confidence 234789999999997520 0111224455778899999888 7888888883 344
Q ss_pred HHHHHhhCCCcEE
Q psy15212 287 AIIFSKNHKDSIR 299 (329)
Q Consensus 287 v~~~l~~~~~~~~ 299 (329)
+...+.+. +++.
T Consensus 335 ~~~~~~~~-G~~~ 346 (373)
T 3tm4_A 335 IEEAIAEN-GFEI 346 (373)
T ss_dssp HHHHHHHT-TEEE
T ss_pred HHHHHHHc-CCEE
Confidence 55555554 4543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=125.54 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=112.2
Q ss_pred ceEEEe-chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHh---C-C-CEEEEEeCChhHHHHHHHHHHHcCCceEEE
Q psy15212 112 GFCSIQ-DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEI---A-D-IKLISVDNNLSRLNMISENLKRLNLKATLI 185 (329)
Q Consensus 112 G~~~~Q-d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~---~-~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~ 185 (329)
|....| .....+...++...++.+|||+|||+|..+..+++. + + ++|+|+|+++.+++.++ ..+-.++++
T Consensus 60 ~~~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~~~v~~~ 135 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDMENITLH 135 (236)
T ss_dssp TEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGCTTEEEE
T ss_pred cccccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccCCceEEE
Confidence 334445 333344444555556789999999999999999987 2 3 79999999999988776 223348999
Q ss_pred ecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh-c
Q psy15212 186 LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK-M 264 (329)
Q Consensus 186 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~-~ 264 (329)
++|+..... ++......||.|++|..- . ...++|..+.+ .
T Consensus 136 ~gD~~~~~~--------------l~~~~~~~fD~I~~d~~~---------~----------------~~~~~l~~~~r~~ 176 (236)
T 2bm8_A 136 QGDCSDLTT--------------FEHLREMAHPLIFIDNAH---------A----------------NTFNIMKWAVDHL 176 (236)
T ss_dssp ECCSSCSGG--------------GGGGSSSCSSEEEEESSC---------S----------------SHHHHHHHHHHHT
T ss_pred ECcchhHHH--------------HHhhccCCCCEEEECCch---------H----------------hHHHHHHHHHHhh
Confidence 999987410 011123479999998641 0 02357888886 9
Q ss_pred CCCCCEEEEEcC-CCCccccHHHHHHHHhhCC-CcEEecCCCcccCCCCCCCCCCeEEEEEEE
Q psy15212 265 LKPGGKLLFVTC-SLWFEESEEQAIIFSKNHK-DSIRLNSPGQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 265 LkpgG~lvysTC-S~~~~Ene~vv~~~l~~~~-~~~~~~~~~~~~p~~~~~~~~~gff~a~l~ 325 (329)
|||||+|++... .+.+..+.+.+..+++.++ +|.........+ . ...+||+...-.
T Consensus 177 LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~--~---~~~~g~~~~~~~ 234 (236)
T 2bm8_A 177 LEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANAS--S---QLDRGVLRRVAA 234 (236)
T ss_dssp CCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETTTTTSC--T---TTTTCEEEECC-
T ss_pred CCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcchhhccc--c---cccchHhhhccc
Confidence 999999998753 4445667778999999988 777654321111 1 355787765433
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=131.51 Aligned_cols=114 Identities=24% Similarity=0.329 Sum_probs=94.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++|++.+++.++++.+|+....
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~----------------- 293 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL----------------- 293 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-----------------
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-----------------
Confidence 46889999999999999999986 569999999999999999999999988999999998764
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
...+.||.|++|||+...+.. .. ....++++.+.+.|||||+++++++...+
T Consensus 294 -~~~~~fD~Ii~npp~~~~~~~----------~~-------~~~~~~l~~~~~~LkpGG~l~iv~n~~l~ 345 (381)
T 3dmg_A 294 -TEEARFDIIVTNPPFHVGGAV----------IL-------DVAQAFVNVAAARLRPGGVFFLVSNPFLK 345 (381)
T ss_dssp -CTTCCEEEEEECCCCCTTCSS----------CC-------HHHHHHHHHHHHHEEEEEEEEEEECTTSC
T ss_pred -ccCCCeEEEEECCchhhcccc----------cH-------HHHHHHHHHHHHhcCcCcEEEEEEcCCCC
Confidence 134689999999997632211 01 12456899999999999999999877654
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=119.70 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=100.1
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccch
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINL 194 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~ 194 (329)
-|++++......+++.++.+|||+|||+|..+..+++... +|+++|+++.+++.+++++...++. ++++.+|+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 82 (239)
T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP- 82 (239)
T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-
T ss_pred ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-
Confidence 4788999999999999999999999999999999998764 9999999999999999999998886 899999988764
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.++.||+|++.-. +.+-++ ...+|+++.++|||||+++++
T Consensus 83 -----------------~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 83 -----------------FPDDSFDIITCRYA------AHHFSD----------------VRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp -----------------SCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------CCCCcEEEEEECCc------hhhccC----------------HHHHHHHHHHHcCCCcEEEEE
Confidence 34578999997532 111111 246799999999999999987
Q ss_pred cCC
Q psy15212 275 TCS 277 (329)
Q Consensus 275 TCS 277 (329)
+..
T Consensus 124 ~~~ 126 (239)
T 1xxl_A 124 DHY 126 (239)
T ss_dssp EEC
T ss_pred EcC
Confidence 654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-13 Score=117.61 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=105.7
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYID 200 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~ 200 (329)
....+.+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...++. ++++.+|+....
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~------- 101 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP------- 101 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-------
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-------
Confidence 34455678899999999999999999999862 69999999999999999999999986 899999988764
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
+.++.||.|++... +..-++ ...+|+.+.++|+|||+++++++....
T Consensus 102 -----------~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 102 -----------LPDNTVDFIFMAFT------FHELSE----------------PLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp -----------SCSSCEEEEEEESC------GGGCSS----------------HHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred -----------CCCCCeeEEEeehh------hhhcCC----------------HHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 34578999997532 211111 246899999999999999998755332
Q ss_pred c---------ccHHHHHHHHhhCCCcEEec
Q psy15212 281 E---------ESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 281 ~---------Ene~vv~~~l~~~~~~~~~~ 301 (329)
. -+.+.+...+++. +|+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~ 177 (219)
T 3dh0_A 149 RDKGPPPEEVYSEWEVGLILEDA-GIRVGR 177 (219)
T ss_dssp CSSSCCGGGSCCHHHHHHHHHHT-TCEEEE
T ss_pred cccCCchhcccCHHHHHHHHHHC-CCEEEE
Confidence 2 2356677777776 676554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.7e-14 Score=121.30 Aligned_cols=120 Identities=21% Similarity=0.164 Sum_probs=97.8
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI 189 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~ 189 (329)
.|.+..+..........+.+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++++|+. ++++.+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 134 (210)
T 3lbf_A 56 QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG 134 (210)
T ss_dssp TSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred CCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 3556667666677777788899999999999999999999988 569999999999999999999999986 89999998
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.... ...+.||+|+++..+.. -| ..+.++|||||
T Consensus 135 ~~~~------------------~~~~~~D~i~~~~~~~~------~~----------------------~~~~~~L~pgG 168 (210)
T 3lbf_A 135 WQGW------------------QARAPFDAIIVTAAPPE------IP----------------------TALMTQLDEGG 168 (210)
T ss_dssp GGCC------------------GGGCCEEEEEESSBCSS------CC----------------------THHHHTEEEEE
T ss_pred ccCC------------------ccCCCccEEEEccchhh------hh----------------------HHHHHhcccCc
Confidence 7743 13468999999865421 11 13577899999
Q ss_pred EEEEEcCC
Q psy15212 270 KLLFVTCS 277 (329)
Q Consensus 270 ~lvysTCS 277 (329)
+++.+...
T Consensus 169 ~lv~~~~~ 176 (210)
T 3lbf_A 169 ILVLPVGE 176 (210)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcC
Confidence 99998765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=122.94 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=92.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.++.+|||+|||+|..+..+++..+++|+|+|+|+.+++.++++++..|+. ++++.+|+..++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------------- 109 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-------------- 109 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--------------
Confidence 6789999999999999999999874469999999999999999999999985 899999998765
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
+..+.||+|++....... . ...+|+.+.++|||||+++++++++...
T Consensus 110 ----~~~~~fD~i~~~~~~~~~-------------~----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 156 (267)
T 3kkz_A 110 ----FRNEELDLIWSEGAIYNI-------------G----------FERGLNEWRKYLKKGGYLAVSECSWFTD 156 (267)
T ss_dssp ----CCTTCEEEEEESSCGGGT-------------C----------HHHHHHHHGGGEEEEEEEEEEEEEESSS
T ss_pred ----CCCCCEEEEEEcCCceec-------------C----------HHHHHHHHHHHcCCCCEEEEEEeeecCC
Confidence 245789999976543211 1 2457999999999999999998765443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=134.52 Aligned_cols=170 Identities=19% Similarity=0.198 Sum_probs=119.8
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC-------------C-CEEEEEeCChhHHHHHHHHHH
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-------------D-IKLISVDNNLSRLNMISENLK 176 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~-------------~-~~v~avD~~~~rl~~l~~n~~ 176 (329)
.|.++--..-+.+.+.++.+.++.+|||+|||+|+.++.+++.+ . ..++|+|+++.+++.++.|+.
T Consensus 150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 46666555666777788889999999999999999999998763 2 589999999999999999999
Q ss_pred HcCC---ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccC---CCCcccCChhHHHHH
Q psy15212 177 RLNL---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN---PDIPWLRRKNDIKKL 250 (329)
Q Consensus 177 ~~g~---~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~---p~~~~~~~~~~~~~l 250 (329)
..|+ .+.+.++|+.... ...+||+|++|||+++....... .+..+..+
T Consensus 230 l~g~~~~~~~i~~gD~l~~~-------------------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~------- 283 (445)
T 2okc_A 230 LHGIGTDRSPIVCEDSLEKE-------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETK------- 283 (445)
T ss_dssp HTTCCSSCCSEEECCTTTSC-------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCS-------
T ss_pred HhCCCcCCCCEeeCCCCCCc-------------------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCc-------
Confidence 8888 5788999987654 12489999999999876543221 11111111
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCC--CCcccc-HHHHHHHHhhCCCcE-EecCCCcccC
Q psy15212 251 SKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEES-EEQAIIFSKNHKDSI-RLNSPGQLLP 308 (329)
Q Consensus 251 ~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~En-e~vv~~~l~~~~~~~-~~~~~~~~~p 308 (329)
..+..++.+++++|||||++++.++. +..... +.+.+++++.+ .+. .+..|..+++
T Consensus 284 -~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~-~l~~ii~lp~~~F~ 343 (445)
T 2okc_A 284 -NNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF-NLHTILRLPTGIFY 343 (445)
T ss_dssp -CHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE-EEEEEEECCSSSSS
T ss_pred -chHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhcC-cEEEEEeCCCCCcc
Confidence 12457899999999999999988754 222222 33444556554 332 3334444454
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-14 Score=122.88 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=109.6
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
....+...++...++.+|||+|||+|..+..+++.++ ++|+++|+++.+++.++++++..|+. ++++.+|+....
T Consensus 56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 134 (229)
T 2avd_A 56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL- 134 (229)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHH-
Confidence 3344445555556788999999999999999998764 69999999999999999999999983 899999986542
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+. .....+.||.|++|++.. .+..+++.+.++|+|||.+++.
T Consensus 135 ~~~~-----------~~~~~~~~D~v~~d~~~~-------------------------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 135 DELL-----------AAGEAGTFDVAVVDADKE-------------------------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HHHH-----------HTTCTTCEEEEEECSCST-------------------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHH-----------hcCCCCCccEEEECCCHH-------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 0000 000015799999998722 1345788999999999999997
Q ss_pred cCCCCc--------cccHHHHHHHH---hhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 275 TCSLWF--------EESEEQAIIFS---KNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 275 TCS~~~--------~Ene~vv~~~l---~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
.+.+.. .+....+..|. ..++++... ++| ..||+.+|+
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp------~~dGl~~~~ 227 (229)
T 2avd_A 179 RVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS-----LLP------LGDGLTLAF 227 (229)
T ss_dssp CCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE-----EEC------STTCEEEEE
T ss_pred CCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEE-----EEe------cCCceEEEE
Confidence 765321 12233444443 345555443 233 348998875
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=124.45 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=86.7
Q ss_pred hhcCCCCCCeEEeecCCCchHHHH-HHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCH-LLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~-la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.++++++|++|||+|||+|+.+.. +|+..+++|+|+|+|+.+++.+++++++.|+. ++++.+|+..++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~---------- 185 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID---------- 185 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------
Confidence 356789999999999999988755 45545689999999999999999999999985 899999998754
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
++.||+|+++.-. ++ ..++++++.+.|||||+|+..+
T Consensus 186 ----------d~~FDvV~~~a~~---------~d----------------~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 186 ----------GLEFDVLMVAALA---------EP----------------KRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ----------GCCCSEEEECTTC---------SC----------------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred ----------CCCcCEEEECCCc---------cC----------------HHHHHHHHHHHcCCCcEEEEEc
Confidence 3689999975420 11 3468999999999999999875
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-14 Score=127.88 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|.+|||+|||+|..+.++++..+.+++++|+|+.+++.++++.+..+..++++.+|+....
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~---------------- 121 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA---------------- 121 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG----------------
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc----------------
Confidence 4678899999999999999999866679999999999999999999998888899999987653
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.++.||.|+.|+..+..... .......+++++.++|||||+|+|.+
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~-----------------~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETW-----------------HTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGT-----------------TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccCCceEEEeeeecccchh-----------------hhcchhhhhhhhhheeCCCCEEEEEe
Confidence 12356789999999865432221 01124568899999999999999854
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=130.41 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=88.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+|++|||+|||+|+.++. |. .+.+|+|+|+|+.+++.+++|++.+|+. ++++.+|+..+.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------------- 256 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------------- 256 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------
Confidence 5789999999999999999 87 3479999999999999999999999983 899999987642
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.||.|++|||..+. +++..+.++|+|||.++|++|+-.
T Consensus 257 ------~~fD~Vi~dpP~~~~--------------------------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 257 ------VKGNRVIMNLPKFAH--------------------------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ------CCEEEEEECCTTTGG--------------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ------CCCcEEEECCcHhHH--------------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 679999999997632 468888999999999999999877
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-13 Score=119.60 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=92.6
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHc-CCc-eEEEecCccccchhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRL-NLK-ATLILSDISKINLKKL 197 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~-g~~-v~~~~~D~~~~~~~~~ 197 (329)
..+...+++.++++|||+|||+|..+..+++.. +++|+++|+++.+++.++++++.. |.. ++++.+|+...+
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---- 161 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---- 161 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC----
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----
Confidence 445556778899999999999999999999984 379999999999999999999988 754 889999987653
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||.|++|+|.. ..+|+++.++|+|||++++.+.+
T Consensus 162 --------------~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 162 --------------LEEAAYDGVALDLMEP---------------------------WKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp --------------CCTTCEEEEEEESSCG---------------------------GGGHHHHHHHEEEEEEEEEEESC
T ss_pred --------------CCCCCcCEEEECCcCH---------------------------HHHHHHHHHhCCCCCEEEEEeCC
Confidence 2346899999998733 14688899999999999987654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-13 Score=118.20 Aligned_cols=140 Identities=10% Similarity=0.145 Sum_probs=99.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++.+|||+|||+|..+..+|+..+ ..|+|+|+++.+++.+++++++.|+. ++++.+|+..+. +
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l-~------------- 98 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL-H------------- 98 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH-H-------------
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH-H-------------
Confidence 3678999999999999999999876 79999999999999999999999986 899999988742 0
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
..+.++.||.|++.-|.. |........++ .|..+++.+.+.|||||+++++|-. ..--+.+.
T Consensus 99 -~~~~~~~~d~v~~~~~~p------------~~~~~~~~rr~--~~~~~l~~~~r~LkpGG~l~i~td~---~~~~~~~~ 160 (218)
T 3dxy_A 99 -KMIPDNSLRMVQLFFPDP------------WHKARHNKRRI--VQVPFAELVKSKLQLGGVFHMATDW---EPYAEHML 160 (218)
T ss_dssp -HHSCTTCEEEEEEESCCC------------CCSGGGGGGSS--CSHHHHHHHHHHEEEEEEEEEEESC---HHHHHHHH
T ss_pred -HHcCCCChheEEEeCCCC------------ccchhhhhhhh--hhHHHHHHHHHHcCCCcEEEEEeCC---HHHHHHHH
Confidence 113467899999974422 11000000000 1345899999999999999988643 11122233
Q ss_pred HHHhhCCCcEEecC
Q psy15212 289 IFSKNHKDSIRLNS 302 (329)
Q Consensus 289 ~~l~~~~~~~~~~~ 302 (329)
..+..+++++.+..
T Consensus 161 ~~~~~~~~~~~~~~ 174 (218)
T 3dxy_A 161 EVMSSIDGYKNLSE 174 (218)
T ss_dssp HHHHTSTTEEECCT
T ss_pred HHHHhCCCcccccC
Confidence 44555667765543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=126.29 Aligned_cols=115 Identities=10% Similarity=0.119 Sum_probs=93.7
Q ss_pred HHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhh
Q psy15212 122 QLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLY 198 (329)
Q Consensus 122 ~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~ 198 (329)
..+...+. +.++.+|||+|||+|..+..+++..+.+|+|+|+++.+++.++++++..|+. ++++.+|+..++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 180 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP----- 180 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-----
Confidence 34455555 7889999999999999999999875679999999999999999999999986 899999998764
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|++.- ++..- . +..+|+.+.++|||||++++++..
T Consensus 181 -------------~~~~~fD~V~~~~------~l~~~-------~----------~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 181 -------------FDKGAVTASWNNE------STMYV-------D----------LHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp -------------CCTTCEEEEEEES------CGGGS-------C----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -------------CCCCCEeEEEECC------chhhC-------C----------HHHHHHHHHHHcCCCcEEEEEEcc
Confidence 3457899999632 11110 0 457899999999999999998743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=119.18 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=114.3
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~ 198 (329)
.-..+...++...++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.+++++...+ .++++.+|+..+.
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~----- 110 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFS----- 110 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCC-----
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC-CeEEEEcchhhCC-----
Confidence 334455556667788899999999999999999864 599999999999999999987754 5889999988764
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC--
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC-- 276 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC-- 276 (329)
..++||+|++.. ++.+-++ .+ ...++|+.+.++|||||++++++.
T Consensus 111 --------------~~~~fD~v~~~~------~l~~~~~------~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 111 --------------TAELFDLIVVAE------VLYYLED------MT-------QMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp --------------CSCCEEEEEEES------CGGGSSS------HH-------HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred --------------CCCCccEEEEcc------HHHhCCC------HH-------HHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 357899999752 2222111 11 134679999999999999999762
Q ss_pred ----CCCccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 277 ----SLWFEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 277 ----S~~~~Ene~vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
++....+.+.+..++... ..++.+.. .+. +...+|++++++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~---~~~~d~~l~~~~~~~ 206 (216)
T 3ofk_A 158 ATCRRWGHVAGAETVITILTEALTEVERVQC-----QGQ---SADEDCLLARFRNPE 206 (216)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHSEEEEEEEE-----ECS---STTCEEEEEEEECCC
T ss_pred CcchhhhhhhhHHHHHHHHHhhccceEEEec-----cCC---ccccchhHHHHhCCc
Confidence 233345555555555443 22232221 112 567899999998753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=117.79 Aligned_cols=107 Identities=22% Similarity=0.225 Sum_probs=81.5
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+++|++|||+|||+|..+.++++..+ ++|+|+|+|+.+++.+.++.++. -.+.++.+|+....
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~------------- 118 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPW------------- 118 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGG-------------
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCch-------------
Confidence 3467899999999999999999999875 79999999999998777776653 24777888887642
Q ss_pred ccccc-cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRF-YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~-~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.+ ...+.||.|++|.+ +| . ....+++++.++|||||+++++.
T Consensus 119 ---~~~~~~~~fD~V~~~~~---------~~--------~-------~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 119 ---KYSGIVEKVDLIYQDIA---------QK--------N-------QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ---GTTTTCCCEEEEEECCC---------ST--------T-------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hhcccccceeEEEEecc---------Ch--------h-------HHHHHHHHHHHHhCCCCEEEEEE
Confidence 00 11368999998832 11 0 01235889999999999999984
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=115.46 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=86.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..++.+|||+|||+|..+..+++....+|+++|+++.+++.+++|++..++. ++++.+|+.+... .+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---------- 110 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE-QF---------- 110 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH-HH----------
T ss_pred hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH-HH----------
Confidence 3578899999999999999988854379999999999999999999999984 8999999876430 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH--HHhcCCCCCEEEEEcCCCCc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN--LWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~--a~~~LkpgG~lvysTCS~~~ 280 (329)
. ...+.||+|++|||+. .+ .. ...+.. +.++|+|||++++++++...
T Consensus 111 --~-~~~~~fD~i~~~~~~~-~~------------~~----------~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 111 --Y-EEKLQFDLVLLDPPYA-KQ------------EI----------VSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp --H-HTTCCEEEEEECCCGG-GC------------CH----------HHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred --H-hcCCCCCEEEECCCCC-ch------------hH----------HHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 0 1246899999999954 10 01 111222 38899999999999887543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=121.08 Aligned_cols=131 Identities=13% Similarity=0.262 Sum_probs=96.3
Q ss_pred CCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eE
Q psy15212 105 KIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-AT 183 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~ 183 (329)
..+.|.......|..........+.+.++.+|||+|||+|..+..+++..+ +|+++|+|+.+++.+++++...|+. +.
T Consensus 10 ~~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~ 88 (260)
T 1vl5_A 10 HHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVE 88 (260)
T ss_dssp -------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred cceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceE
Confidence 346677777777888877778888888999999999999999999998765 9999999999999999999998876 89
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++.+|+..++ +.++.||+|++... +..-++ ...+|+++.+
T Consensus 89 ~~~~d~~~l~------------------~~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r 128 (260)
T 1vl5_A 89 YVQGDAEQMP------------------FTDERFHIVTCRIA------AHHFPN----------------PASFVSEAYR 128 (260)
T ss_dssp EEECCC-CCC------------------SCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHH
T ss_pred EEEecHHhCC------------------CCCCCEEEEEEhhh------hHhcCC----------------HHHHHHHHHH
Confidence 9999998765 34578999996422 111111 2367999999
Q ss_pred cCCCCCEEEEEcC
Q psy15212 264 MLKPGGKLLFVTC 276 (329)
Q Consensus 264 ~LkpgG~lvysTC 276 (329)
+|||||++++++.
T Consensus 129 ~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 129 VLKKGGQLLLVDN 141 (260)
T ss_dssp HEEEEEEEEEEEE
T ss_pred HcCCCCEEEEEEc
Confidence 9999999998743
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=123.96 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=93.1
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKKL 197 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~~ 197 (329)
..+...+++.+|.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|++..++ . ++++.+|+....
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---- 177 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---- 177 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc----
Confidence 3445566788999999999999999999999843 7999999999999999999999998 3 889999987642
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+.||+|++|+|+. .++|+.+.++|+|||++++.+++
T Consensus 178 ---------------~~~~~D~V~~~~~~~---------------------------~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 178 ---------------DEKDVDALFLDVPDP---------------------------WNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp ---------------SCCSEEEEEECCSCG---------------------------GGTHHHHHHHEEEEEEEEEEESS
T ss_pred ---------------cCCccCEEEECCcCH---------------------------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 346799999999854 14688889999999999998765
Q ss_pred C
Q psy15212 278 L 278 (329)
Q Consensus 278 ~ 278 (329)
.
T Consensus 216 ~ 216 (277)
T 1o54_A 216 T 216 (277)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=119.84 Aligned_cols=114 Identities=19% Similarity=0.168 Sum_probs=92.5
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYID 200 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~ 200 (329)
.+...+.+.++.+|||+|||+|..+..+++..+.+|+++|+|+.+++.++++++..|+. ++++.+|+....
T Consensus 27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 99 (256)
T 1nkv_A 27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV------- 99 (256)
T ss_dssp HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-------
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-------
Confidence 33445667889999999999999999999887779999999999999999999999885 899999998765
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ++.||+|++. +++..-++ ..++|+++.++|||||++++++..
T Consensus 100 -----------~-~~~fD~V~~~------~~~~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 100 -----------A-NEKCDVAACV------GATWIAGG----------------FAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp -----------C-SSCEEEEEEE------SCGGGTSS----------------SHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred -----------c-CCCCCEEEEC------CChHhcCC----------------HHHHHHHHHHHcCCCeEEEEecCc
Confidence 2 5789999962 22222111 245799999999999999998643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=122.60 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=93.9
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHc-C--Cc-eEEEecCccc
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRL-N--LK-ATLILSDISK 191 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~-g--~~-v~~~~~D~~~ 191 (329)
......+...+++.+|++|||+|||+|..+.++++.. +++|+++|+++.+++.+++|++.. | .. ++++.+|+..
T Consensus 85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 3344455666788899999999999999999999864 279999999999999999999988 6 33 8899999876
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.. +..+.||.|++|+|.. .++|+++.++|+|||++
T Consensus 165 ~~------------------~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~pgG~l 199 (280)
T 1i9g_A 165 SE------------------LPDGSVDRAVLDMLAP---------------------------WEVLDAVSRLLVAGGVL 199 (280)
T ss_dssp CC------------------CCTTCEEEEEEESSCG---------------------------GGGHHHHHHHEEEEEEE
T ss_pred cC------------------CCCCceeEEEECCcCH---------------------------HHHHHHHHHhCCCCCEE
Confidence 54 2356899999987721 13688899999999999
Q ss_pred EEEcCC
Q psy15212 272 LFVTCS 277 (329)
Q Consensus 272 vysTCS 277 (329)
++++++
T Consensus 200 ~~~~~~ 205 (280)
T 1i9g_A 200 MVYVAT 205 (280)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 988765
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=121.03 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=101.0
Q ss_pred hHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhh
Q psy15212 120 AAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKL 197 (329)
Q Consensus 120 ~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~ 197 (329)
+..+...++. +.++.+|||+|||+|..+..+++... +|+|+|+++.+++.+++|++.+++.+++..+|+....
T Consensus 106 tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~---- 180 (254)
T 2nxc_A 106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL---- 180 (254)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG----
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcC----
Confidence 3444444432 56789999999999999999888654 9999999999999999999999887888888876521
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..++||+|+++.+.. ....++..+.++|+|||+++++...
T Consensus 181 ---------------~~~~fD~Vv~n~~~~-------------------------~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 181 ---------------PFGPFDLLVANLYAE-------------------------LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ---------------GGCCEEEEEEECCHH-------------------------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------------cCCCCCEEEECCcHH-------------------------HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 235799999876521 1246889999999999999987543
Q ss_pred CCccccHHHHHHHHhhCCCcEEec
Q psy15212 278 LWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 278 ~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.+..+.+...++++ +++.+.
T Consensus 221 ---~~~~~~v~~~l~~~-Gf~~~~ 240 (254)
T 2nxc_A 221 ---KDRAPLVREAMAGA-GFRPLE 240 (254)
T ss_dssp ---GGGHHHHHHHHHHT-TCEEEE
T ss_pred ---cCCHHHHHHHHHHC-CCEEEE
Confidence 34455666667665 666654
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=127.61 Aligned_cols=126 Identities=18% Similarity=0.232 Sum_probs=101.6
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKK 196 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~ 196 (329)
|..+.+....+.+.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...++.++++.+|+....
T Consensus 182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--- 258 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--- 258 (343)
T ss_dssp CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC---
T ss_pred cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc---
Confidence 34566667777666788999999999999999999876 69999999999999999999999988888888876532
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+.||.|++++|... |. ........++++.+.+.|||||.+++.+.
T Consensus 259 -----------------~~~fD~Iv~~~~~~~-g~----------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 259 -----------------KGRFDMIISNPPFHD-GM----------------QTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp -----------------CSCEEEEEECCCCCS-SS----------------HHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -----------------cCCeeEEEECCCccc-Cc----------------cCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 468999999999641 11 01122356789999999999999999888
Q ss_pred CCCc
Q psy15212 277 SLWF 280 (329)
Q Consensus 277 S~~~ 280 (329)
+..+
T Consensus 305 ~~~~ 308 (343)
T 2pjd_A 305 AFLP 308 (343)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 7665
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=120.85 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=88.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHh--CC-CEEEEEeCChhHHHHHHHHHHHc---CCc-----------------------
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEI--AD-IKLISVDNNLSRLNMISENLKRL---NLK----------------------- 181 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~--~~-~~v~avD~~~~rl~~l~~n~~~~---g~~----------------------- 181 (329)
.++.+|||+|||+|..+..+++. .+ .+|+|+|+|+.+++.+++|+... ++.
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 45779999999999999999987 33 69999999999999999998876 541
Q ss_pred ----eE-------------EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCCh
Q psy15212 182 ----AT-------------LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRK 244 (329)
Q Consensus 182 ----v~-------------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~ 244 (329)
++ +..+|+....... .......||+|++|||+.....+.+.
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~-------------~~~~~~~fD~Iv~npp~~~~~~~~~~--------- 187 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALS-------------AVLAGSAPDVVLTDLPYGERTHWEGQ--------- 187 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHH-------------HHHTTCCCSEEEEECCGGGSSSSSSC---------
T ss_pred hhhhhhhhccccccccccceeecccccccccc-------------cccCCCCceEEEeCCCeecccccccc---------
Confidence 44 8888877642000 00023479999999998754332210
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 245 NDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 245 ~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.....+..+++.+.++|+|||+++++.++
T Consensus 188 ----~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 188 ----VPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp ----CCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred ----ccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 11234567899999999999999986555
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=120.58 Aligned_cols=166 Identities=13% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--------CCc-eEEEecCccc-cchhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--------NLK-ATLILSDISK-INLKKLY 198 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--------g~~-v~~~~~D~~~-~~~~~~~ 198 (329)
+.++.+|||+|||+|..+..+|+..+ ..|+|+|+|+.+++.++++++.+ ++. ++++.+|+.. +.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~----- 121 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP----- 121 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG-----
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH-----
Confidence 35678999999999999999999876 69999999999999999999877 775 8999999986 32
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..+....+|.|++.-|..-... ++-. .+. .+..++..+.++|+|||.|+++|..
T Consensus 122 -----------~~~~~~~~d~v~~~~p~p~~k~--~~~~--~r~----------~~~~~l~~~~~~LkpgG~l~~~td~- 175 (246)
T 2vdv_E 122 -----------NFFEKGQLSKMFFCFPDPHFKQ--RKHK--ARI----------ITNTLLSEYAYVLKEGGVVYTITDV- 175 (246)
T ss_dssp -----------GTSCTTCEEEEEEESCCCC--------C--SSC----------CCHHHHHHHHHHEEEEEEEEEEESC-
T ss_pred -----------HhccccccCEEEEECCCccccc--chhH--Hhh----------ccHHHHHHHHHHcCCCCEEEEEecc-
Confidence 1234578999987655331100 0000 000 1357899999999999999986532
Q ss_pred CccccHHHHHHHHhhCCCcEEecCC--------CcccCCCC-C---CCCCCeEEEEEEEecC
Q psy15212 279 WFEESEEQAIIFSKNHKDSIRLNSP--------GQLLPTVN-K---KQDYDGFFYSLFQKRK 328 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~~~~~~--------~~~~p~~~-~---~~~~~gff~a~l~k~~ 328 (329)
++-.+.+...+..++.++.+... ..+.|... . ...+...|.+.++|..
T Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~ 235 (246)
T 2vdv_E 176 --KDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLP 235 (246)
T ss_dssp --HHHHHHHHHHHHHSTTEEECCHHHHHTCHHHHHHHHSSHHHHHHHHTTCCCEEEEEEECC
T ss_pred --HHHHHHHHHHHHhCcCeEecCccccccCcccccCCCCCHHHHHHHHCCCCeEEEEEEECC
Confidence 23333444445666666554321 01112110 0 1245678999999874
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-13 Score=122.63 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=91.2
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISK 191 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~ 191 (329)
++....++... +++|.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.++++++..+.. ++++++|+.+
T Consensus 57 ~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~ 134 (261)
T 4gek_A 57 ISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 134 (261)
T ss_dssp HHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred HHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence 44444555444 46899999999999999999998764 59999999999999999999988874 8999999987
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
++ .+.||.|++.- ++..- ... ....+|+++.+.|||||+|
T Consensus 135 ~~--------------------~~~~d~v~~~~------~l~~~-------~~~-------~~~~~l~~i~~~LkpGG~l 174 (261)
T 4gek_A 135 IA--------------------IENASMVVLNF------TLQFL-------EPS-------ERQALLDKIYQGLNPGGAL 174 (261)
T ss_dssp CC--------------------CCSEEEEEEES------CGGGS-------CHH-------HHHHHHHHHHHHEEEEEEE
T ss_pred cc--------------------ccccccceeee------eeeec-------Cch-------hHhHHHHHHHHHcCCCcEE
Confidence 65 24699998631 21110 111 1245899999999999999
Q ss_pred EEEcCC
Q psy15212 272 LFVTCS 277 (329)
Q Consensus 272 vysTCS 277 (329)
+.+.-.
T Consensus 175 ii~e~~ 180 (261)
T 4gek_A 175 VLSEKF 180 (261)
T ss_dssp EEEEEB
T ss_pred EEEecc
Confidence 987543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=113.09 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=98.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+|++|||+|||+|..++.+|...+ .+|+|+|+++..++.+++|++++|+. ++++.+|+...-
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l------------- 79 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF------------- 79 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-------------
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc-------------
Confidence 46789999999999999999998765 69999999999999999999999995 899999986532
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....||.|++ .|.|- .+-.+||..+...|+++|+||.+.- .+.+.
T Consensus 80 -----~~~~~~D~Ivi----aG~Gg--------------------~~i~~Il~~~~~~L~~~~~lVlq~~-----~~~~~ 125 (225)
T 3kr9_A 80 -----EETDQVSVITI----AGMGG--------------------RLIARILEEGLGKLANVERLILQPN-----NREDD 125 (225)
T ss_dssp -----CGGGCCCEEEE----EEECH--------------------HHHHHHHHHTGGGCTTCCEEEEEES-----SCHHH
T ss_pred -----ccCcCCCEEEE----cCCCh--------------------HHHHHHHHHHHHHhCCCCEEEEECC-----CCHHH
Confidence 01236998885 23332 1245789999999999999998644 36677
Q ss_pred HHHHHhhCCCcEEec
Q psy15212 287 AIIFSKNHKDSIRLN 301 (329)
Q Consensus 287 v~~~l~~~~~~~~~~ 301 (329)
+..++..+ +|..+.
T Consensus 126 vr~~L~~~-Gf~i~~ 139 (225)
T 3kr9_A 126 LRIWLQDH-GFQIVA 139 (225)
T ss_dssp HHHHHHHT-TEEEEE
T ss_pred HHHHHHHC-CCEEEE
Confidence 77788877 666543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=122.22 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCCCCHHHHHHHHHHCCCeeEEeCCceEE-EcCCCCCCCCcccccc-------eEEEechhHHHHhhhc--CCCCCCeEE
Q psy15212 68 QRKTTLISYNKLLKKSGLETTIIGPLAIK-LHTPISISKIPKFFNG-------FCSIQDAAAQLAAPLL--DIRSGMYVL 137 (329)
Q Consensus 68 ~~k~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~G-------~~~~Qd~~s~l~~~~l--~~~~g~~VL 137 (329)
....+.+.+.+.|.+.|+...+....++. ++.. .+.....|.+. ....|.........++ .+.++++||
T Consensus 11 ~~~~~~~~l~~~l~~~~~~~~~~~~~a~~~~~r~-~f~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VL 89 (227)
T 1r18_A 11 SVGANNEDLIRQLKDHGVIASDAVAQAMKETDRK-HYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARIL 89 (227)
T ss_dssp CBCSSHHHHHHHHHHTTSCCCHHHHHHHHTSCGG-GTCSSCTTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEE
T ss_pred cCccHHHHHHHHHHhcCCCCCHHHHHHHHhCCHH-HcCCcccccCCCcccCCCCccCChHHHHHHHHHHHhhCCCCCEEE
Confidence 44567888888998888532110001110 0100 00000134333 3333444344445555 478899999
Q ss_pred eecCCCchHHHHHHHhCC-------CEEEEEeCChhHHHHHHHHHHHcC-----Cc-eEEEecCccccchhhhhhhhccc
Q psy15212 138 DACSAPGGKTCHLLEIAD-------IKLISVDNNLSRLNMISENLKRLN-----LK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 138 Dlcag~G~kt~~la~~~~-------~~v~avD~~~~rl~~l~~n~~~~g-----~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
|+|||+|..+..+++..+ ++|+++|+++.+++.+++++.+.+ .. ++++.+|+....
T Consensus 90 diG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------- 158 (227)
T 1r18_A 90 DVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY----------- 158 (227)
T ss_dssp EESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-----------
T ss_pred EECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC-----------
Confidence 999999999999998654 499999999999999999998876 33 889999987622
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+.||+|++++++.. +++.+.+.|||||+|+.++-
T Consensus 159 -------~~~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 159 -------PPNAPYNAIHVGAAAPD----------------------------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp -------GGGCSEEEEEECSCBSS----------------------------CCHHHHHTEEEEEEEEEEES
T ss_pred -------CcCCCccEEEECCchHH----------------------------HHHHHHHHhcCCCEEEEEEe
Confidence 12267999999887541 23567788999999998754
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=111.34 Aligned_cols=131 Identities=21% Similarity=0.211 Sum_probs=101.0
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~ 194 (329)
++.....+...+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++++..++ . ++++.+|+....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 95 (192)
T 1l3i_A 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL- 95 (192)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc-
Confidence 34444555556678889999999999999999999876 6999999999999999999999998 3 889999877621
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....||.|+++.+.. . ...+++.+.++|+|||+++++
T Consensus 96 -----------------~~~~~~D~v~~~~~~~------------------~-------~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 96 -----------------CKIPDIDIAVVGGSGG------------------E-------LQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp -----------------TTSCCEEEEEESCCTT------------------C-------HHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------ccCCCCCEEEECCchH------------------H-------HHHHHHHHHHhcCCCcEEEEE
Confidence 0114799999886531 0 146789999999999999998
Q ss_pred cCCCCccccHHHHHHHHhhC
Q psy15212 275 TCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~ 294 (329)
+++ .++...+..+++++
T Consensus 134 ~~~---~~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 134 AIL---LETKFEAMECLRDL 150 (192)
T ss_dssp ECB---HHHHHHHHHHHHHT
T ss_pred ecC---cchHHHHHHHHHHC
Confidence 875 23334445555554
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=114.03 Aligned_cols=110 Identities=13% Similarity=0.192 Sum_probs=84.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++... .|+++|+++.+++.+++|++..++.++++++|+.+.. ... .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~------------~- 105 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL-PEA------------K- 105 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH-HHH------------H-
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHH-Hhh------------h-
Confidence 688999999999999999998644 6999999999999999999998888899999987642 000 0
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH--HhcCCCCCEEEEEcCCCCc
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL--WKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a--~~~LkpgG~lvysTCS~~~ 280 (329)
...++||.|++|+|+. +.. . ++++.. .++|+|||++++++++...
T Consensus 106 ~~~~~~D~i~~~~~~~--~~~------------~----------~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 106 AQGERFTVAFMAPPYA--MDL------------A----------ALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp HTTCCEEEEEECCCTT--SCT------------T----------HHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred ccCCceEEEEECCCCc--hhH------------H----------HHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 0124799999999965 110 0 123333 5899999999998776443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=107.27 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=98.1
Q ss_pred EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccch
Q psy15212 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINL 194 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~ 194 (329)
.++.-...+...+.+.++.+|||+|||+|..+..+++ .+.+++++|+++.+++.++++++..|+. ++++.+|+....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~- 96 (183)
T 2yxd_A 19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVL- 96 (183)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHG-
T ss_pred CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccc-
Confidence 3344445555566778899999999999999999998 4479999999999999999999999985 899999987622
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..+.||.|+++++ . ....+++.+.++ |||+++++
T Consensus 97 ------------------~~~~~D~i~~~~~-~-------------------------~~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 97 ------------------DKLEFNKAFIGGT-K-------------------------NIEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp ------------------GGCCCSEEEECSC-S-------------------------CHHHHHHHHHHT--TCCEEEEE
T ss_pred ------------------cCCCCcEEEECCc-c-------------------------cHHHHHHHHhhC--CCCEEEEE
Confidence 2368999999877 1 023567777777 99999998
Q ss_pred cCCCCccccHHHHHHHHhhCC
Q psy15212 275 TCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~~ 295 (329)
+++ ++. ...+...++++.
T Consensus 131 ~~~--~~~-~~~~~~~l~~~g 148 (183)
T 2yxd_A 131 TIV--LEN-AAKIINEFESRG 148 (183)
T ss_dssp ESC--HHH-HHHHHHHHHHTT
T ss_pred ecc--ccc-HHHHHHHHHHcC
Confidence 875 233 333455555553
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=113.99 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=85.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
++.+|||+|||+|..+..++...+ .+++++|+++.+++.+++++...++. ++++.+|+....
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------------- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---------------- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC----------------
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC----------------
Confidence 478999999999999999998865 79999999999999999999999986 899999988754
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+.||.|+++.- . ....+++.+.++|+|||++++....
T Consensus 129 ---~~~~~D~i~~~~~-------------------~-------~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 129 ---SEPPFDGVISRAF-------------------A-------SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp ---CCSCEEEEECSCS-------------------S-------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred ---ccCCcCEEEEecc-------------------C-------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2468999996421 0 0246899999999999999987554
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=113.26 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=89.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~ 202 (329)
...+.+.++ +|||+|||+|..+..+++..+.+|+++|+++.+++.++++++..++. ++++.+|+...+
T Consensus 37 ~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------- 106 (219)
T 3dlc_A 37 INRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--------- 106 (219)
T ss_dssp HHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS---------
T ss_pred HHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC---------
Confidence 334455666 99999999999999999884479999999999999999999999874 899999998765
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|++..... .-++ ...+|+.+.++|+|||++++++..
T Consensus 107 ---------~~~~~~D~v~~~~~l~------~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 107 ---------IEDNYADLIVSRGSVF------FWED----------------VATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp ---------SCTTCEEEEEEESCGG------GCSC----------------HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ---------CCcccccEEEECchHh------hccC----------------HHHHHHHHHHhCCCCCEEEEEecc
Confidence 3457899999765322 1111 345899999999999999998644
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-12 Score=113.02 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=99.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+|++|||+|||+|..++.+++..+ .+|+|+|+++..++.+++|++++|+. ++++.+|+....
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~------------- 85 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF------------- 85 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-------------
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-------------
Confidence 56789999999999999999998765 68999999999999999999999995 899999988753
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....||.|++ .|.|- .+-.+||..+...|+++|+||.+.- .+++.
T Consensus 86 -----~~~~~~D~Ivi----aGmGg--------------------~lI~~IL~~~~~~l~~~~~lIlqp~-----~~~~~ 131 (230)
T 3lec_A 86 -----EEADNIDTITI----CGMGG--------------------RLIADILNNDIDKLQHVKTLVLQPN-----NREDD 131 (230)
T ss_dssp -----CGGGCCCEEEE----EEECH--------------------HHHHHHHHHTGGGGTTCCEEEEEES-----SCHHH
T ss_pred -----ccccccCEEEE----eCCch--------------------HHHHHHHHHHHHHhCcCCEEEEECC-----CChHH
Confidence 12237999875 23332 1345689999999999999998753 35777
Q ss_pred HHHHHhhCCCcEEec
Q psy15212 287 AIIFSKNHKDSIRLN 301 (329)
Q Consensus 287 v~~~l~~~~~~~~~~ 301 (329)
+..+|..+ +|..+.
T Consensus 132 lr~~L~~~-Gf~i~~ 145 (230)
T 3lec_A 132 LRKWLAAN-DFEIVA 145 (230)
T ss_dssp HHHHHHHT-TEEEEE
T ss_pred HHHHHHHC-CCEEEE
Confidence 78888877 666543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=117.63 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=93.5
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYI 199 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~ 199 (329)
..+...+.+.++.+|||+|||+|..+..+++..+.+|+++|+|+.+++.+++++...|+. ++++.+|+...+
T Consensus 51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------ 124 (273)
T 3bus_A 51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP------ 124 (273)
T ss_dssp HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC------
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC------
Confidence 334445567889999999999999999999877789999999999999999999998875 899999998765
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|++.. ++.+.++ ...+|+++.++|||||++++++..
T Consensus 125 ------------~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 125 ------------FEDASFDAVWALE------SLHHMPD----------------RGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ------------SCTTCEEEEEEES------CTTTSSC----------------HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ------------CCCCCccEEEEec------hhhhCCC----------------HHHHHHHHHHHcCCCeEEEEEEee
Confidence 3457899999632 2222221 246899999999999999998754
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=120.15 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=83.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHHcC-----Cc-eEEEecCccccchhh
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD------IKLISVDNNLSRLNMISENLKRLN-----LK-ATLILSDISKINLKK 196 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~~g-----~~-v~~~~~D~~~~~~~~ 196 (329)
.++++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.+ .. ++++.+|+.......
T Consensus 77 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 478899999999999999999999864 599999999999999999999988 33 889999987631000
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
....+.||+|++++++.. +++.+.+.|+|||+++.++
T Consensus 157 --------------~~~~~~fD~I~~~~~~~~----------------------------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 157 --------------KKELGLFDAIHVGASASE----------------------------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp --------------HHHHCCEEEEEECSBBSS----------------------------CCHHHHHHEEEEEEEEEEE
T ss_pred --------------CccCCCcCEEEECCchHH----------------------------HHHHHHHhcCCCcEEEEEE
Confidence 012357999999987641 2466778899999999874
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=124.63 Aligned_cols=128 Identities=19% Similarity=0.128 Sum_probs=95.1
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCcccc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKI 192 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~ 192 (329)
|..+......++..+++.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.++++++..+.. ++++.+|+...
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT 102 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence 4445556666777788889999999999999999999986 469999999999999999999988875 89999998876
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHH-----------HHHHHHHHH
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK-----------YSCKILNNL 261 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~-----------~q~~lL~~a 261 (329)
+ ...||.|++|+|+..+.- .+..+.. .|. +.+
T Consensus 103 ~--------------------~~~~D~Vv~n~py~~~~~--------------~~~~ll~~~~~~~~~~l~~Q~---e~a 145 (299)
T 2h1r_A 103 V--------------------FPKFDVCTANIPYKISSP--------------LIFKLISHRPLFKCAVLMFQK---EFA 145 (299)
T ss_dssp C--------------------CCCCSEEEEECCGGGHHH--------------HHHHHHHCSSCCSEEEEEEEH---HHH
T ss_pred C--------------------cccCCEEEEcCCcccccH--------------HHHHHHhcCCccceeeehHHH---HHH
Confidence 4 247999999999874321 1111111 011 557
Q ss_pred HhcCCCCCEEEEEcCCCC
Q psy15212 262 WKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS~~ 279 (329)
.++++++|...|+|||..
T Consensus 146 ~rlla~~G~~~y~~ls~~ 163 (299)
T 2h1r_A 146 ERMLANVGDSNYSRLTIN 163 (299)
T ss_dssp HHHTCCTTSTTCCHHHHH
T ss_pred HHHhcCCCCcchhHHHHH
Confidence 788999999899888743
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=118.38 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=94.8
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...+.+++|.+|||+|||+|..+..+++..+.+|+|+|+|+.+++.+++++...|+. ++++.+|+..+
T Consensus 64 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------- 134 (302)
T 3hem_A 64 ALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--------- 134 (302)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------
T ss_pred HHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---------
Confidence 4455677899999999999999999999986689999999999999999999999986 88999998653
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
++.||+|++. +++.+-|+..-....+ ....+++.+.++|||||+++..+.+..
T Consensus 135 ------------~~~fD~v~~~------~~~~~~~d~~~~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 135 ------------DEPVDRIVSL------GAFEHFADGAGDAGFE-------RYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp ------------CCCCSEEEEE------SCGGGTTCCSSCCCTT-------HHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ------------CCCccEEEEc------chHHhcCccccccchh-------HHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 3689999964 3333333210000001 135689999999999999999887644
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=111.18 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=98.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhh----hhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKL----YIDI 201 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~----~~~~ 201 (329)
++++.+|||+|||+|+.+..+++..+ ++|+|+|+++.. ... ++++.+|+.......+ +++.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence 56789999999999999999999874 699999999842 123 7888899876430000 0000
Q ss_pred cc--cccccc-cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 202 NK--KTNNRF-RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 202 ~~--~~~~~~-~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.. ...... ..+.++.||.|++|+++...|.. ..+.......+..+|+.+.++|||||+++..+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~-----------~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~- 156 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK-----------IDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL- 156 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC-
Confidence 00 000000 00234689999999865433320 1223334456778999999999999999976532
Q ss_pred CccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 279 WFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
.++...+...++.+ +..+.. +-|...+....+.|+++.=.|
T Consensus 157 --~~~~~~l~~~l~~~--f~~v~~---~~~~~~r~~s~e~y~v~~~~~ 197 (201)
T 2plw_A 157 --GSQTNNLKTYLKGM--FQLVHT---TKPKASRNESREIYLVCKNFL 197 (201)
T ss_dssp --STTHHHHHHHHHTT--EEEEEE---CCCC-----CCEEEEEEEEEC
T ss_pred --CCCHHHHHHHHHHH--HheEEE---ECCcccCCcCceEEEEEecCc
Confidence 34445555566553 332221 112111124566777775433
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=121.66 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=92.1
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
|......+...+.+++|++|||+|||+|..+..+++..+ ++|+++|+++.+++.++++++..|+. ++++.+|+....
T Consensus 60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (317)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence 444455566677889999999999999999999998754 57999999999999999999999986 899999988743
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
...+.||+|++++++...+ +.+.+.|||||++++
T Consensus 140 ------------------~~~~~fD~Iv~~~~~~~~~----------------------------~~~~~~LkpgG~lvi 173 (317)
T 1dl5_A 140 ------------------PEFSPYDVIFVTVGVDEVP----------------------------ETWFTQLKEGGRVIV 173 (317)
T ss_dssp ------------------GGGCCEEEEEECSBBSCCC----------------------------HHHHHHEEEEEEEEE
T ss_pred ------------------ccCCCeEEEEEcCCHHHHH----------------------------HHHHHhcCCCcEEEE
Confidence 1236799999998765221 245668999999998
Q ss_pred EcC
Q psy15212 274 VTC 276 (329)
Q Consensus 274 sTC 276 (329)
+..
T Consensus 174 ~~~ 176 (317)
T 1dl5_A 174 PIN 176 (317)
T ss_dssp EBC
T ss_pred EEC
Confidence 843
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=115.58 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=95.9
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI 192 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~ 192 (329)
+.....+...++...++.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++.|+. ++++.+|+...
T Consensus 45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET 124 (239)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence 344455556666667788999999999999999999874 79999999999999999999999985 88999998653
Q ss_pred chhhhhhh--hcccccccccccCC--CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 193 NLKKLYID--INKKTNNRFRFYKN--KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 193 ~~~~~~~~--~~~~~~~~~~~~~~--~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
. +.+... ...+. ..+.. +.||+|++|.... . ...+++.+.++|+||
T Consensus 125 ~-~~~~~~~~~~~~~----~~f~~~~~~fD~I~~~~~~~------------------~-------~~~~l~~~~~~L~pg 174 (239)
T 2hnk_A 125 L-QVLIDSKSAPSWA----SDFAFGPSSIDLFFLDADKE------------------N-------YPNYYPLILKLLKPG 174 (239)
T ss_dssp H-HHHHHCSSCCGGG----TTTCCSTTCEEEEEECSCGG------------------G-------HHHHHHHHHHHEEEE
T ss_pred H-HHHHhhccccccc----ccccCCCCCcCEEEEeCCHH------------------H-------HHHHHHHHHHHcCCC
Confidence 2 000000 00000 00122 6899999985311 1 125688899999999
Q ss_pred CEEEEEcCCCC
Q psy15212 269 GKLLFVTCSLW 279 (329)
Q Consensus 269 G~lvysTCS~~ 279 (329)
|++++.++.+.
T Consensus 175 G~lv~~~~~~~ 185 (239)
T 2hnk_A 175 GLLIADNVLWD 185 (239)
T ss_dssp EEEEEECSSGG
T ss_pred eEEEEEccccC
Confidence 99999886543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=116.32 Aligned_cols=139 Identities=13% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHH------cCCc-eEEEecCccc-cchhhhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR------LNLK-ATLILSDISK-INLKKLYID 200 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~------~g~~-v~~~~~D~~~-~~~~~~~~~ 200 (329)
..++.+|||+|||+|..+..+|+..+ ..|+|+|+++.+++.++++++. .+.. ++++.+|+.. ++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~------- 116 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLP------- 116 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHH-------
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhh-------
Confidence 34577999999999999999998876 7999999999999999998865 3554 8999999986 32
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
..+..+.||.|++..|.. |........+ -.+..+|+.+.++|||||.|+++|+. +
T Consensus 117 ---------~~~~~~~~D~v~~~~~dp------------~~k~~h~krr--~~~~~~l~~~~~~LkpGG~l~~~td~--~ 171 (235)
T 3ckk_A 117 ---------NFFYKGQLTKMFFLFPDP------------HFKRTKHKWR--IISPTLLAEYAYVLRVGGLVYTITDV--L 171 (235)
T ss_dssp ---------HHCCTTCEEEEEEESCC-------------------------CCCHHHHHHHHHHEEEEEEEEEEESC--H
T ss_pred ---------hhCCCcCeeEEEEeCCCc------------hhhhhhhhhh--hhhHHHHHHHHHHCCCCCEEEEEeCC--H
Confidence 123457899999865522 1110000000 01346899999999999999998763 2
Q ss_pred cccHHHHHHHHhhCCCcEEec
Q psy15212 281 EESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~ 301 (329)
. -.+.+...+..++.+..+.
T Consensus 172 ~-~~~~~~~~l~~~~~f~~~~ 191 (235)
T 3ckk_A 172 E-LHDWMCTHFEEHPLFERVP 191 (235)
T ss_dssp H-HHHHHHHHHHTSTTEEEEC
T ss_pred H-HHHHHHHHHHHCCCccccC
Confidence 1 1122333345677776653
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=113.30 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=89.8
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKKLYID 200 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~~~~~ 200 (329)
.+...+++.+|++|||+|||+|..+..+++. +.+|+++|+++.+++.++++++..++ . ++++.+|+....
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------- 153 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE------- 153 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-------
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-------
Confidence 4445566788999999999999999999988 67999999999999999999999987 3 888999987632
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..++.||.|++|+|-. ..+++.+.++|+|||++++.+.+
T Consensus 154 -----------~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 154 -----------VPEGIFHAAFVDVREP---------------------------WHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp -----------CCTTCBSEEEECSSCG---------------------------GGGHHHHHHHBCTTCEEEEEESS
T ss_pred -----------cCCCcccEEEECCcCH---------------------------HHHHHHHHHHcCCCCEEEEEeCC
Confidence 1346899999987711 13578889999999999987654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-12 Score=112.43 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=97.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+|++|||+|||+|..++.+++..+ .+|+|+|+++..++.+++|++++|+. ++++.+|+....
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~------------- 85 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI------------- 85 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-------------
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-------------
Confidence 56789999999999999999998765 68999999999999999999999995 899999987653
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....||.|++ .|.|- .+-.+||..+...|+++|+||.+.- .+.+.
T Consensus 86 -----~~~~~~D~Ivi----agmGg--------------------~lI~~IL~~~~~~L~~~~~lIlq~~-----~~~~~ 131 (244)
T 3gnl_A 86 -----EKKDAIDTIVI----AGMGG--------------------TLIRTILEEGAAKLAGVTKLILQPN-----IAAWQ 131 (244)
T ss_dssp -----CGGGCCCEEEE----EEECH--------------------HHHHHHHHHTGGGGTTCCEEEEEES-----SCHHH
T ss_pred -----CccccccEEEE----eCCch--------------------HHHHHHHHHHHHHhCCCCEEEEEcC-----CChHH
Confidence 12236999885 23332 2345789999999999999998743 35677
Q ss_pred HHHHHhhCCCcEEe
Q psy15212 287 AIIFSKNHKDSIRL 300 (329)
Q Consensus 287 v~~~l~~~~~~~~~ 300 (329)
+..+|..+ +|..+
T Consensus 132 lr~~L~~~-Gf~i~ 144 (244)
T 3gnl_A 132 LREWSEQN-NWLIT 144 (244)
T ss_dssp HHHHHHHH-TEEEE
T ss_pred HHHHHHHC-CCEEE
Confidence 77777776 56543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=123.61 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=104.0
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCc
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRLNLKATLILSDI 189 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~ 189 (329)
|.++-.+.-...++.++.+.++.+|||+|||+|+.+..+++.. ...|+|+|+++.+++.+ -.++++++|+
T Consensus 19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~D~ 90 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADF 90 (421)
T ss_dssp --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCG
T ss_pred ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeCCh
Confidence 5555555556666667766667799999999999999999875 27999999999998766 2378899998
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----------HHHHHHHHH
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----------SKYSCKILN 259 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----------~~~q~~lL~ 259 (329)
.... ..++||+|++|||+...+...+.. .....+....+ ...+..+++
T Consensus 91 ~~~~-------------------~~~~fD~Ii~NPPy~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 148 (421)
T 2ih2_A 91 LLWE-------------------PGEAFDLILGNPPYGIVGEASKYP---IHVFKAVKDLYKKAFSTWKGKYNLYGAFLE 148 (421)
T ss_dssp GGCC-------------------CSSCEEEEEECCCCCCBSCTTTCS---BCCCHHHHHHHHHHCTTCCTTCCHHHHHHH
T ss_pred hhcC-------------------ccCCCCEEEECcCccCcccccccc---cccCHHHHHHHHHhhhcccCCccHHHHHHH
Confidence 7654 246899999999998665421100 00001111111 124568899
Q ss_pred HHHhcCCCCCEEEEEcCC--CCccccHHHHHHHHhhC
Q psy15212 260 NLWKMLKPGGKLLFVTCS--LWFEESEEQAIIFSKNH 294 (329)
Q Consensus 260 ~a~~~LkpgG~lvysTCS--~~~~Ene~vv~~~l~~~ 294 (329)
++.++|+|||++++.++. +.....+...+.+++..
T Consensus 149 ~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~ 185 (421)
T 2ih2_A 149 KAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG 185 (421)
T ss_dssp HHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred HHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcC
Confidence 999999999999998865 22334455555555543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-12 Score=107.56 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=106.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++.+|||+|||+|..+..+++. +.+++++|+++.+++.+++++. .++++.+|+...+
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~~---------------- 102 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVDQ---------------- 102 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTSC----------------
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccCC----------------
Confidence 457889999999999999999986 5699999999999999988763 2778889988754
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHH
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~ 289 (329)
...+.||+|++++++-. ..... ....+|+.+.++|+|||++++++.+... ...+.+..
T Consensus 103 --~~~~~~D~i~~~~~~~~------------~~~~~-------~~~~~l~~~~~~l~~~G~l~~~~~~~~~-~~~~~~~~ 160 (195)
T 3cgg_A 103 --ISETDFDLIVSAGNVMG------------FLAED-------GREPALANIHRALGADGRAVIGFGAGRG-WVFGDFLE 160 (195)
T ss_dssp --CCCCCEEEEEECCCCGG------------GSCHH-------HHHHHHHHHHHHEEEEEEEEEEEETTSS-CCHHHHHH
T ss_pred --CCCCceeEEEECCcHHh------------hcChH-------HHHHHHHHHHHHhCCCCEEEEEeCCCCC-cCHHHHHH
Confidence 23568999998765331 01111 1356899999999999999987654322 34455666
Q ss_pred HHhhCCCcEEecCC--CcccCCCCCCCCCCeEEEEEEEec
Q psy15212 290 FSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 290 ~l~~~~~~~~~~~~--~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.++.. +++.+... ....|. ....++++.+.+|.
T Consensus 161 ~l~~~-Gf~~~~~~~~~~~~~~----~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 161 VAERV-GLELENAFESWDLKPF----VQGSEFLVAVFTKK 195 (195)
T ss_dssp HHHHH-TEEEEEEESSTTCCBC----CTTCSEEEEEEEEC
T ss_pred HHHHc-CCEEeeeecccccCcC----CCCCcEEEEEEecC
Confidence 66655 56655431 122232 34567888888774
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=112.28 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=88.6
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC------ceEEEecCccccchh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL------KATLILSDISKINLK 195 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~------~v~~~~~D~~~~~~~ 195 (329)
.+...+...++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...++ .++++.+|+....
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 97 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD-- 97 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC--
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc--
Confidence 334445556788999999999999999998765 6999999999999999999987776 3789999986543
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...++||+|++... +..- ... ...++|+.+.++|||||.++.+.
T Consensus 98 ----------------~~~~~fD~v~~~~~------l~~~-------~~~-------~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 98 ----------------KRFHGYDAATVIEV------IEHL-------DLS-------RLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ----------------GGGCSCSEEEEESC------GGGC-------CHH-------HHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ----------------ccCCCcCEEeeHHH------HHcC-------CHH-------HHHHHHHHHHHHcCCCEEEEEcc
Confidence 13468999996432 2111 111 13568999999999999777665
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
+.
T Consensus 142 ~~ 143 (217)
T 3jwh_A 142 NI 143 (217)
T ss_dssp BH
T ss_pred Cc
Confidence 53
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-12 Score=110.68 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=87.8
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC------ceEEEecCccccchh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL------KATLILSDISKINLK 195 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~------~v~~~~~D~~~~~~~ 195 (329)
.+...+...++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...++ .++++.+|+....
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 97 (219)
T 3jwg_A 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD-- 97 (219)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC--
T ss_pred HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc--
Confidence 334444556788999999999999999998766 6999999999999999999987765 4789999986544
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...++||+|++.- ++..- ... ...++|+.+.+.|||||.++...
T Consensus 98 ----------------~~~~~fD~V~~~~------~l~~~-------~~~-------~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 98 ----------------KRFSGYDAATVIE------VIEHL-------DEN-------RLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp ----------------GGGTTCSEEEEES------CGGGC-------CHH-------HHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ----------------cccCCCCEEEEHH------HHHhC-------CHH-------HHHHHHHHHHHhhCCCEEEEEcc
Confidence 2346899999632 22111 111 13568999999999999776654
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
+.
T Consensus 142 ~~ 143 (219)
T 3jwg_A 142 NK 143 (219)
T ss_dssp BG
T ss_pred ch
Confidence 43
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=113.97 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=93.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCcccc-chhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKI-NLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~-~~~~~~~~~~~~~~~ 207 (329)
++.+|||+|||+|..+..+++..+ .+|+|+|+++.+++.+++|++.+++. ++++.+|+... .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------------- 130 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM-------------- 130 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST--------------
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhh--------------
Confidence 577999999999999999998753 79999999999999999999999985 89999997652 1
Q ss_pred cccccC---CCCCCEEEEccCCccccc-cc----c-----CCCCcccCChhH-H--HHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 208 RFRFYK---NKYFDRILADLPCTGSGV-VR----R-----NPDIPWLRRKND-I--KKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 208 ~~~~~~---~~~fD~Vl~D~PCsg~G~-~~----~-----~p~~~~~~~~~~-~--~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
..+. ++.||.|++|||+...+. +. + .|...+.....+ + .........++..+.++++++|.+
T Consensus 131 --~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~ 208 (254)
T 2h00_A 131 --DALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY 208 (254)
T ss_dssp --TTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCE
T ss_pred --hhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEE
Confidence 0112 258999999999986651 11 0 111111100000 0 011123345677777889999976
Q ss_pred EEEcCCCCccccHHHHHHHHhhC
Q psy15212 272 LFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 272 vysTCS~~~~Ene~vv~~~l~~~ 294 (329)
+.. ....++.+.+..++++.
T Consensus 209 ~~~---~~~~~~~~~~~~~l~~~ 228 (254)
T 2h00_A 209 SCM---LGKKCSLAPLKEELRIQ 228 (254)
T ss_dssp EEE---ESSTTSHHHHHHHHHHT
T ss_pred EEC---CCChhHHHHHHHHHHHc
Confidence 532 33445545566666665
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=115.42 Aligned_cols=120 Identities=25% Similarity=0.235 Sum_probs=94.7
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcc
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDIS 190 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~ 190 (329)
.|....+......+...+.+.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++...+ .++++.+|+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~ 126 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGT 126 (231)
T ss_dssp TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGG
T ss_pred CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcc
Confidence 45555555555566667778899999999999999999999876 699999999999999999998887 7889999987
Q ss_pred ccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCE
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGK 270 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~ 270 (329)
... ...+.||+|+++.++... ...+.+.|+|||+
T Consensus 127 ~~~------------------~~~~~fD~v~~~~~~~~~----------------------------~~~~~~~L~pgG~ 160 (231)
T 1vbf_A 127 LGY------------------EEEKPYDRVVVWATAPTL----------------------------LCKPYEQLKEGGI 160 (231)
T ss_dssp GCC------------------GGGCCEEEEEESSBBSSC----------------------------CHHHHHTEEEEEE
T ss_pred ccc------------------ccCCCccEEEECCcHHHH----------------------------HHHHHHHcCCCcE
Confidence 632 123689999988764411 1246778999999
Q ss_pred EEEEcCCC
Q psy15212 271 LLFVTCSL 278 (329)
Q Consensus 271 lvysTCS~ 278 (329)
+++++.+-
T Consensus 161 l~~~~~~~ 168 (231)
T 1vbf_A 161 MILPIGVG 168 (231)
T ss_dssp EEEEECSS
T ss_pred EEEEEcCC
Confidence 99987653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-12 Score=114.01 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=89.7
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...+.+.+|.+|||+|||+|..+..+++..+.+|+++|+|+.+++.+++++...|+. ++++.+|+..+
T Consensus 56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------- 126 (287)
T 1kpg_A 56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------- 126 (287)
T ss_dssp HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------
Confidence 3445567889999999999999999999666679999999999999999999988874 88999998643
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
+ +.||+|++. +++.+-+. . ....+|+.+.++|||||+++.++...
T Consensus 127 -----------~-~~fD~v~~~------~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 127 -----------D-EPVDRIVSI------GAFEHFGH-------E-------RYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp -----------C-CCCSEEEEE------SCGGGTCT-------T-------THHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred -----------C-CCeeEEEEe------CchhhcCh-------H-------HHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 2 689999963 23322211 1 13567999999999999999987553
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=118.52 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=89.5
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+.++.+|||+|||+|..+..+++..+.+|+++|+++.+++.+++++...|+. ++++.+|+..++
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------- 145 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP------------- 145 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-------------
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-------------
Confidence 67789999999999999999999876679999999999999999999998884 899999998765
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.++.||+|++.- ++.+-++ ...+|+++.++|||||++++++.
T Consensus 146 -----~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 -----CEDNSYDFIWSQD------AFLHSPD----------------KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp -----SCTTCEEEEEEES------CGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----CCCCCEeEEEecc------hhhhcCC----------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 3457899999632 2222221 24679999999999999999864
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=128.96 Aligned_cols=173 Identities=10% Similarity=0.063 Sum_probs=117.8
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-------------------CEEEEEeCChhHHHHH
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-------------------IKLISVDNNLSRLNMI 171 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-------------------~~v~avD~~~~rl~~l 171 (329)
.|.++--+.-+.+++.++.+.++.+|||+|||+|++.+.+++.+. ..++|+|+++.+++.+
T Consensus 148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 476776666677778888999999999999999999999887531 3799999999999999
Q ss_pred HHHHHHcCCc------eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChh
Q psy15212 172 SENLKRLNLK------ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245 (329)
Q Consensus 172 ~~n~~~~g~~------v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~ 245 (329)
+.|+...|+. +.+.++|+.... .....+||+|++|||+++........+ +.....
T Consensus 228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~-----------------~~~~~~fD~Vv~NPPf~~~~~~~~~~~--~~~~~~ 288 (541)
T 2ar0_A 228 LMNCLLHDIEGNLDHGGAIRLGNTLGSD-----------------GENLPKAHIVATNPPFGSAAGTNITRT--FVHPTS 288 (541)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHH-----------------HHTSCCEEEEEECCCCTTCSSCCCCSC--CSSCCS
T ss_pred HHHHHHhCCCccccccCCeEeCCCcccc-----------------cccccCCeEEEECCCcccccchhhHhh--cCCCCC
Confidence 9999988875 678899977543 012368999999999987644321111 111101
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCccccHHHH-HHHHhhCCCc-EEecCCCcccCC
Q psy15212 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFEESEEQA-IIFSKNHKDS-IRLNSPGQLLPT 309 (329)
Q Consensus 246 ~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~Ene~vv-~~~l~~~~~~-~~~~~~~~~~p~ 309 (329)
..+..++.+++++|+|||++++.+.. +.....+..+ +++++.. .+ .++..|..++++
T Consensus 289 ------~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~-~l~~ii~Lp~~~F~~ 349 (541)
T 2ar0_A 289 ------NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTILRLPTGIFYA 349 (541)
T ss_dssp ------CHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEEECCSSCSSS
T ss_pred ------chHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC-CEEEEEEcCcCcccC
Confidence 12346899999999999999888643 2222223444 5555543 22 233445445543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=119.69 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=101.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC----------ceEEEecCccccchhhh
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL----------KATLILSDISKINLKKL 197 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~----------~v~~~~~D~~~~~~~~~ 197 (329)
..+.+|||+|||+|+.+..+++. + .+|+++|+++.+++.+++++ +. ++ .++++.+|+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l---- 147 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI---- 147 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh----
Confidence 45679999999999999999987 6 69999999999999999998 54 32 3889999987642
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. .++||+|++|+|+. .|. +. .+ .+.++++.+.+.|+|||.++..+++
T Consensus 148 ------------~~--~~~fD~Ii~d~~~~-~~~----~~-----------~l--~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 148 ------------KN--NRGFDVIIADSTDP-VGP----AK-----------VL--FSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp ------------HH--CCCEEEEEEECCCC-C--------------------T--TSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ------------cc--cCCeeEEEECCCCC-CCc----ch-----------hh--hHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 11 46899999999863 111 00 00 1356788999999999999998766
Q ss_pred CC--ccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 278 LW--FEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 278 ~~--~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
.. .+....+.+.+-+.++...... ...|.. .+..||++|.
T Consensus 196 ~~~~~~~~~~~~~~l~~~f~~v~~~~---~~vP~~---~g~~~~~~as 237 (281)
T 1mjf_A 196 VYLFTDELISAYKEMKKVFDRVYYYS---FPVIGY---ASPWAFLVGV 237 (281)
T ss_dssp TTTSHHHHHHHHHHHHHHCSEEEEEE---ECCTTS---SSSEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHCCceEEEE---EecCCC---CceEEEEEee
Confidence 42 2222223333323334333222 234544 4567788775
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-12 Score=107.14 Aligned_cols=127 Identities=23% Similarity=0.290 Sum_probs=85.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC----------CEEEEEeCChhHHHHHHHHHHHcCCc-eEEE-ecCccccchhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD----------IKLISVDNNLSRLNMISENLKRLNLK-ATLI-LSDISKINLKKL 197 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~----------~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~-~~D~~~~~~~~~ 197 (329)
+.+|.+|||+|||+|..+..+++..+ ++|+|+|+++.+ .+. ++++ .+|+........
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 57899999999999999999999864 699999999843 223 6788 888766431000
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.. ....++.||+|++|.++...|.. ..+.......+..+++.+.++|||||+++..++.
T Consensus 89 ~~----------~~~~~~~fD~V~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 89 IL----------EVLPGRRADVILSDMAPNATGFR-----------DLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HH----------HHSGGGCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HH----------HhcCCCCCcEEEeCCCCCCCCCc-----------ccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 00 00123589999999865544331 1122233445678999999999999999987653
Q ss_pred CCccccHHHHHHH
Q psy15212 278 LWFEESEEQAIIF 290 (329)
Q Consensus 278 ~~~~Ene~vv~~~ 290 (329)
..+.++....+
T Consensus 148 --~~~~~~~~~~l 158 (196)
T 2nyu_A 148 --GSQSRRLQRRL 158 (196)
T ss_dssp --SGGGHHHHHHH
T ss_pred --CccHHHHHHHH
Confidence 33334444433
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-13 Score=118.61 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=87.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++.+|||+|||+|..+..+++....+|+++|+|+.+++.++++.+..+..++++.+|+....
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---------------- 121 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA---------------- 121 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG----------------
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh----------------
Confidence 5678899999999999999997643369999999999999999999888866899999988762
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+.++.||.|++|.- + . .. ..+. ......+++++.++|||||+|++.+++
T Consensus 122 ~~~~~~~fD~V~~d~~-~-~-~~-~~~~-------------~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTY-P-L-SE-ETWH-------------THQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp GGSCTTCEEEEEECCC-C-C-BG-GGTT-------------THHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cccCCCceEEEEECCc-c-c-ch-hhhh-------------hhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 1134578999998621 1 0 00 0000 012345789999999999999987554
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=108.40 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=89.2
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
.....+...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...++. ++++.+|+...+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------- 93 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT-------- 93 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC--------
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC--------
Confidence 3444556667889999999999999999986 569999999999999999999998884 899999988765
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. .+.||.|++..... .. ..++ ...+++.+.++|+|||++++.+
T Consensus 94 ----------~-~~~~D~v~~~~~l~------~~-------~~~~-------~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 94 ----------F-DRQYDFILSTVVLM------FL-------EAKT-------IPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp ----------C-CCCEEEEEEESCGG------GS-------CGGG-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------C-CCCceEEEEcchhh------hC-------CHHH-------HHHHHHHHHHhcCCCeEEEEEE
Confidence 2 57899999764321 11 1111 3568999999999999977654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=116.29 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=95.6
Q ss_pred ccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 110 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
..|....+......+...+.+.++++|||+|||+|..+..+++..+.+|+++|+++.+++.++++++..|+. ++++.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 148 (235)
T 1jg1_A 69 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD 148 (235)
T ss_dssp STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 456666666666666777788899999999999999999999876569999999999999999999999986 8899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+.... .....||+|+++.+... +.+.+.+.|+||
T Consensus 149 ~~~~~------------------~~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~pg 182 (235)
T 1jg1_A 149 GSKGF------------------PPKAPYDVIIVTAGAPK----------------------------IPEPLIEQLKIG 182 (235)
T ss_dssp GGGCC------------------GGGCCEEEEEECSBBSS----------------------------CCHHHHHTEEEE
T ss_pred cccCC------------------CCCCCccEEEECCcHHH----------------------------HHHHHHHhcCCC
Confidence 73211 12246999998866431 112467789999
Q ss_pred CEEEEEcCC
Q psy15212 269 GKLLFVTCS 277 (329)
Q Consensus 269 G~lvysTCS 277 (329)
|++++++-.
T Consensus 183 G~lvi~~~~ 191 (235)
T 1jg1_A 183 GKLIIPVGS 191 (235)
T ss_dssp EEEEEEECS
T ss_pred cEEEEEEec
Confidence 999988653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=121.48 Aligned_cols=112 Identities=24% Similarity=0.298 Sum_probs=87.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcC------------CceEEEe
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLN------------LKATLIL 186 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g------------~~v~~~~ 186 (329)
...+...+++.+|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++|+..++ -.++++.
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 44555666889999999999999999999998753 799999999999999999998754 2388999
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 266 (329)
+|+.... ..+..+.||.|++|+|.. | .+++.+.+.|+
T Consensus 174 ~d~~~~~----------------~~~~~~~fD~V~~~~~~~------------~---------------~~l~~~~~~Lk 210 (336)
T 2b25_A 174 KDISGAT----------------EDIKSLTFDAVALDMLNP------------H---------------VTLPVFYPHLK 210 (336)
T ss_dssp SCTTCCC-----------------------EEEEEECSSST------------T---------------TTHHHHGGGEE
T ss_pred CChHHcc----------------cccCCCCeeEEEECCCCH------------H---------------HHHHHHHHhcC
Confidence 9988752 012345799999998733 1 15888999999
Q ss_pred CCCEEEEEc
Q psy15212 267 PGGKLLFVT 275 (329)
Q Consensus 267 pgG~lvysT 275 (329)
|||+|+..+
T Consensus 211 pgG~lv~~~ 219 (336)
T 2b25_A 211 HGGVCAVYV 219 (336)
T ss_dssp EEEEEEEEE
T ss_pred CCcEEEEEe
Confidence 999998543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-12 Score=110.37 Aligned_cols=110 Identities=19% Similarity=0.345 Sum_probs=87.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC------ceEEEecCccccchhhhhhhhcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL------KATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~------~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...++ .+.++.+|+..++
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 96 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---------- 96 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC----------
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC----------
Confidence 357889999999999999999987 56999999999999999999998887 3688899988765
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||+|++... +..-++ .. ....+|+.+.++|+|||++++++..
T Consensus 97 --------~~~~~~D~v~~~~~------l~~~~~------~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 97 --------FHDSSFDFAVMQAF------LTSVPD------PK-------ERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp --------SCTTCEEEEEEESC------GGGCCC------HH-------HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --------CCCCceeEEEEcch------hhcCCC------HH-------HHHHHHHHHHHHcCCCeEEEEEECC
Confidence 34578999997533 211111 11 1236899999999999999998653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=107.88 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=103.5
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++ .+.++.+|+..++
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~--------------- 98 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD--------------- 98 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC---------------
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC---------------
Confidence 3567889999999999999999986 569999999999999999987 3556778877654
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc-------
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE------- 281 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~------- 281 (329)
..+.||+|++... +..- ..+ ....+|+.+.++|||||++++++......
T Consensus 99 ----~~~~fD~v~~~~~------l~~~-------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 154 (211)
T 3e23_A 99 ----AIDAYDAVWAHAC------LLHV-------PRD-------ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLAR 154 (211)
T ss_dssp ----CCSCEEEEEECSC------GGGS-------CHH-------HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSC
T ss_pred ----CCCcEEEEEecCc------hhhc-------CHH-------HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccch
Confidence 3578999997532 1111 111 23568999999999999999987654322
Q ss_pred ----ccHHHHHHHHhhCCC-cEEecCCCcccCCCCCCCCCCeEEEEEEEecC
Q psy15212 282 ----ESEEQAIIFSKNHKD-SIRLNSPGQLLPTVNKKQDYDGFFYSLFQKRK 328 (329)
Q Consensus 282 ----Ene~vv~~~l~~~~~-~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~~ 328 (329)
-+.+.+..++++. + |+.+......-.+. .+....+++.+++.+
T Consensus 155 ~~~~~~~~~~~~~l~~a-G~f~~~~~~~~~~~~~---~~~~~~wl~~~~~~~ 202 (211)
T 3e23_A 155 YYNYPSEEWLRARYAEA-GTWASVAVESSEGKGF---DQELAQFLHVSVRKP 202 (211)
T ss_dssp EECCCCHHHHHHHHHHH-CCCSEEEEEEEEEECT---TSCEEEEEEEEEECC
T ss_pred hccCCCHHHHHHHHHhC-CCcEEEEEEeccCCCC---CCCCceEEEEEEecC
Confidence 2566777777775 4 65543211001111 233455666666653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=112.31 Aligned_cols=120 Identities=23% Similarity=0.235 Sum_probs=93.2
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecC
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSD 188 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D 188 (329)
|....+......+...+.+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...++. +++..+|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 136 (215)
T 2yxe_A 57 GQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD 136 (215)
T ss_dssp TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred CcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 44444444444555666788999999999999999999999874 79999999999999999999998886 8899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg 268 (329)
+.... ...+.||+|+++.+.... .+.+.++||||
T Consensus 137 ~~~~~------------------~~~~~fD~v~~~~~~~~~----------------------------~~~~~~~L~pg 170 (215)
T 2yxe_A 137 GTLGY------------------EPLAPYDRIYTTAAGPKI----------------------------PEPLIRQLKDG 170 (215)
T ss_dssp GGGCC------------------GGGCCEEEEEESSBBSSC----------------------------CHHHHHTEEEE
T ss_pred cccCC------------------CCCCCeeEEEECCchHHH----------------------------HHHHHHHcCCC
Confidence 85432 124679999987664310 13667889999
Q ss_pred CEEEEEcCC
Q psy15212 269 GKLLFVTCS 277 (329)
Q Consensus 269 G~lvysTCS 277 (329)
|+++.++.+
T Consensus 171 G~lv~~~~~ 179 (215)
T 2yxe_A 171 GKLLMPVGR 179 (215)
T ss_dssp EEEEEEESS
T ss_pred cEEEEEECC
Confidence 999988654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-12 Score=109.36 Aligned_cols=106 Identities=17% Similarity=0.311 Sum_probs=85.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..++ +|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+..+.++.+|+...+
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------------- 89 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD---------------- 89 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS----------------
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC----------------
Confidence 4567 9999999999999999875 569999999999999999999988888899999988764
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||+|++... . + ... ....+|+.+.++|+|||++++++.+
T Consensus 90 --~~~~~fD~v~~~~~-----~--------~--~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 90 --IVADAWEGIVSIFC-----H--------L--PSS-------LRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp --CCTTTCSEEEEECC-----C--------C--CHH-------HHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred --CCcCCccEEEEEhh-----c--------C--CHH-------HHHHHHHHHHHhcCCCcEEEEEEec
Confidence 24578999996311 0 0 111 2456899999999999999998754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=114.09 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=88.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...+ .++++.+|+...+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~--------------- 105 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYD--------------- 105 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCC---------------
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccC---------------
Confidence 56788999999999999999999874 799999999999999999987766 7899999998865
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
.. +.||+|++..... .- ... ...++|+++.++|||||++++++....
T Consensus 106 ---~~-~~fD~v~~~~~l~------~~-------~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 106 ---FE-EKYDMVVSALSIH------HL-------EDE-------DKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp ---CC-SCEEEEEEESCGG------GS-------CHH-------HHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred ---CC-CCceEEEEeCccc------cC-------CHH-------HHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 22 7899999764321 11 111 124589999999999999999876543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=122.23 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=73.0
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.+.+.++++|||+|||+|..+..+|+. ..+|+|+|+|+.+++.+++|++.+|+. ++++.+|+.... ..
T Consensus 281 ~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l-~~--------- 349 (433)
T 1uwv_A 281 WLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV-TK--------- 349 (433)
T ss_dssp HHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC-SS---------
T ss_pred hhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh-hh---------
Confidence 445678899999999999999999986 569999999999999999999999986 899999998732 00
Q ss_pred cccccccCCCCCCEEEEccCCccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
+. +..+.||+|++|||+.|.
T Consensus 350 ---~~-~~~~~fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 350 ---QP-WAKNGFDKVLLDPARAGA 369 (433)
T ss_dssp ---SG-GGTTCCSEEEECCCTTCC
T ss_pred ---hh-hhcCCCCEEEECCCCccH
Confidence 00 134579999999998854
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=110.98 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=87.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++... +++++|+++.+++.++++++..+..++++.+|+...+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------------- 98 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS----------------- 98 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-----------------
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC-----------------
Confidence 4578999999999999999998755 9999999999999999999988866899999988754
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+.||.|++.++..- .... ...++|+.+.++|+|||++++.++.
T Consensus 99 -~~~~~~D~v~~~~~~~~-------------~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 99 -FEDKTFDYVIFIDSIVH-------------FEPL-------ELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp -SCTTCEEEEEEESCGGG-------------CCHH-------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCCCcEEEEEEcCchHh-------------CCHH-------HHHHHHHHHHHHcCCCcEEEEEecC
Confidence 24568999998866110 0111 1356899999999999999988764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-12 Score=113.42 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=90.2
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.+...+.+.++.+|||+|||+|..+..+++..+.+|+++|+|+.+++.++++.... -.++++.+|+...+
T Consensus 46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~--------- 115 (266)
T 3ujc_A 46 KILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKE--------- 115 (266)
T ss_dssp HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCC---------
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCC---------
Confidence 33445567889999999999999999999876679999999999999999887665 34889999998765
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|++... +.+- .. .....+|+.+.++|||||++++++..
T Consensus 116 ---------~~~~~fD~v~~~~~------l~~~-------~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 116 ---------FPENNFDLIYSRDA------ILAL-------SL-------ENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp ---------CCTTCEEEEEEESC------GGGS-------CH-------HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------CCCCcEEEEeHHHH------HHhc-------Ch-------HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 34678999996432 1111 11 12456899999999999999998743
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=117.54 Aligned_cols=116 Identities=15% Similarity=0.228 Sum_probs=91.7
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYID 200 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~ 200 (329)
.+...+.+.+|.+|||+|||+|..+..+++..+.+|+++|+|+.+++.+++++...|+. ++++.+|+..++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 153 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA------- 153 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-------
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-------
Confidence 33445567889999999999999999999876679999999999999999999998875 889999976542
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.||+|++.. ++.+-+. . ....+|+.+.++|||||++++++....
T Consensus 154 --------------~~fD~v~~~~------~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 154 --------------EPVDRIVSIE------AFEHFGH-------E-------NYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp --------------CCCSEEEEES------CGGGTCG-------G-------GHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred --------------CCcCEEEEeC------hHHhcCH-------H-------HHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 6799999643 2221111 1 135689999999999999999886644
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=112.18 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=83.8
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.+.++.+|||+|||+|..+.++++..+ ++|+|+|+++.+++.++++++.. -.+.++.+|+..... +
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~---~-------- 137 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQE---Y-------- 137 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGG---G--------
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCccc---c--------
Confidence 3467889999999999999999999876 79999999999999999998765 348888999887320 0
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.. .. ..||+|+.|+|.. . ....+++.+.++|||||+++.+
T Consensus 138 --~~-~~-~~~D~v~~~~~~~-----------------~-------~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 138 --AN-IV-EKVDVIYEDVAQP-----------------N-------QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp --TT-TS-CCEEEEEECCCST-----------------T-------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cc-cC-ccEEEEEEecCCh-----------------h-------HHHHHHHHHHHhCCCCcEEEEE
Confidence 00 12 6799999876521 0 1234689999999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=111.42 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=84.4
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+.+.++++|||+|||+|..+.++++..+ ++|+|+|+++.+++.+.++.++. -.++++.+|+.....
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~----------- 140 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHK----------- 140 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGG-----------
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhh-----------
Confidence 4577899999999999999999999853 79999999999998888888775 348899999887420
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+. ...+.||+|++|+| . |+ ....++.++.++|||||+++.+.
T Consensus 141 ---~~-~~~~~~D~V~~~~~-~--------~~---------------~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 141 ---YR-MLIAMVDVIFADVA-Q--------PD---------------QTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp ---GG-GGCCCEEEEEECCC-C--------TT---------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hc-ccCCcEEEEEEcCC-C--------cc---------------HHHHHHHHHHHHcCCCeEEEEEE
Confidence 00 12468999999987 1 11 12346788999999999999853
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=103.71 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC-C-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh-hhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA-D-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK-KLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~-~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~-~~~~~~~~~~~ 206 (329)
+.++.+|||+|||+|..+..+++.. + .+++++|+++ +++. -.++++.+|+...+.. .+.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~-------- 81 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALL-------- 81 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHH--------
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhh--------
Confidence 6788999999999999999999885 3 7999999999 6532 2378888998765300 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
....++.||.|++|+|+...+.. ..+.......+..+++.+.++|+|||.++.++.. .++...
T Consensus 82 ---~~~~~~~~D~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~ 144 (180)
T 1ej0_A 82 ---ERVGDSKVQVVMSDMAPNMSGTP-----------AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ---GEGFDE 144 (180)
T ss_dssp ---HHHTTCCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES---STTHHH
T ss_pred ---ccCCCCceeEEEECCCccccCCC-----------ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec---CCcHHH
Confidence 00234689999999998755431 1122233445578999999999999999986543 233344
Q ss_pred HHHHHhh
Q psy15212 287 AIIFSKN 293 (329)
Q Consensus 287 v~~~l~~ 293 (329)
+...++.
T Consensus 145 ~~~~~~~ 151 (180)
T 1ej0_A 145 YLREIRS 151 (180)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-12 Score=116.12 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=95.1
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
+..+.+...+....++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++++...+.+++++.+|+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-- 85 (284)
T 3gu3_A 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-- 85 (284)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC--
Confidence 33444555556677889999999999999999998865 69999999999999999999988878899999998765
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+ +++||+|++... +..-++ ..++|+.+.+.|||||+++..+
T Consensus 86 ----------------~-~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 86 ----------------L-NDKYDIAICHAF------LLHMTT----------------PETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp ----------------C-SSCEEEEEEESC------GGGCSS----------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------c-CCCeeEEEECCh------hhcCCC----------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 2 468999997543 211111 2368999999999999999877
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
..
T Consensus 127 ~~ 128 (284)
T 3gu3_A 127 PH 128 (284)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-12 Score=121.64 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=69.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++++|||+|||+|..+..+|+. +.+|+|+|+++.+++.+++|++.+|+.++++.+|+.+..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~---------------- 350 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS---------------- 350 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC----------------
T ss_pred cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcC----------------
Confidence 567889999999999999999986 459999999999999999999999888889999988754
Q ss_pred cccCCCCCCEEEEccCCccc
Q psy15212 210 RFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~ 229 (329)
. ..||.|++|||+.|.
T Consensus 351 ---~-~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 351 ---V-KGFDTVIVDPPRAGL 366 (425)
T ss_dssp ---C-TTCSEEEECCCTTCS
T ss_pred ---c-cCCCEEEEcCCccch
Confidence 2 279999999997643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=104.87 Aligned_cols=136 Identities=13% Similarity=0.062 Sum_probs=92.3
Q ss_pred chhHHHHhhhcCC--CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 118 DAAAQLAAPLLDI--RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 118 d~~s~l~~~~l~~--~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
.+.+.+....+.. .++.+|||+|||+|..+..+++.. +|+|+|+|+.+++. .-.++++.+|+....
T Consensus 7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~~~-- 74 (170)
T 3q87_B 7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLCSI-- 74 (170)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTTTB--
T ss_pred CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhhhc--
Confidence 3444445555654 678899999999999999999865 99999999999987 223788999987632
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.++.||.|+++||+....-... |.-... ..++++.+.+.+ |||++++++
T Consensus 75 -----------------~~~~fD~i~~n~~~~~~~~~~~-----~~~~~~--------~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 75 -----------------NQESVDVVVFNPPYVPDTDDPI-----IGGGYL--------GREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp -----------------CGGGCSEEEECCCCBTTCCCTT-----TBCCGG--------GCHHHHHHHHHC-CSSEEEEEE
T ss_pred -----------------ccCCCCEEEECCCCccCCcccc-----ccCCcc--------hHHHHHHHHhhC-CCCEEEEEE
Confidence 3368999999999763221100 111111 123566666666 999999876
Q ss_pred CCCCccccHHHHHHHHhhCCCcEEe
Q psy15212 276 CSLWFEESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 276 CS~~~~Ene~vv~~~l~~~~~~~~~ 300 (329)
.+. .+.+.+..++++. +++..
T Consensus 124 ~~~---~~~~~l~~~l~~~-gf~~~ 144 (170)
T 3q87_B 124 IEA---NRPKEVLARLEER-GYGTR 144 (170)
T ss_dssp EGG---GCHHHHHHHHHHT-TCEEE
T ss_pred ecC---CCHHHHHHHHHHC-CCcEE
Confidence 543 4455566667665 55544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=110.26 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=86.8
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
...++.+|||+|||+|..+..++...+.+|+++|+|+.+++.+++++...+..++++.+|+...+
T Consensus 20 ~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------------- 84 (209)
T 2p8j_A 20 ESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP--------------- 84 (209)
T ss_dssp HSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC---------------
T ss_pred ccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC---------------
Confidence 35568899999999999866555555579999999999999999999888767889999988764
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
+.++.||.|++..... + ... ....++++.+.+.|||||++++++.+.
T Consensus 85 ---~~~~~fD~v~~~~~l~------~-------~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 85 ---FKDESMSFVYSYGTIF------H-------MRK-------NDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp ---SCTTCEEEEEECSCGG------G-------SCH-------HHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ---CCCCceeEEEEcChHH------h-------CCH-------HHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 2457899999642211 1 111 124568999999999999999988764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=111.25 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=83.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.+|++|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++. -.++++.+|+.....
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~------------- 136 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPEE------------- 136 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGGG-------------
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcch-------------
Confidence 67899999999999999999998753 79999999999999999998765 348899999886420
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....+.||+|++|+|. ++ ....++..+.++|||||+++++.
T Consensus 137 --~~~~~~~~D~v~~~~~~---------~~---------------~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 137 --YRALVPKVDVIFEDVAQ---------PT---------------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp --GTTTCCCEEEEEECCCS---------TT---------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hhcccCCceEEEECCCC---------Hh---------------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 00113579999999871 11 12335889999999999999874
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=111.51 Aligned_cols=112 Identities=8% Similarity=0.046 Sum_probs=83.5
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH-------------cCCceEEEecCccccch
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR-------------LNLKATLILSDISKINL 194 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~-------------~g~~v~~~~~D~~~~~~ 194 (329)
+.+.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++... ....++++++|+..++
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~- 95 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT- 95 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST-
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC-
Confidence 34567899999999999999999987 56999999999999999987653 1234889999998865
Q ss_pred hhhhhhhcccccccccccCC-CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKN-KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
..+ ++||.|++-. ++... .. .....+++++.++|||||++++
T Consensus 96 -----------------~~~~~~fD~v~~~~------~l~~l-------~~-------~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 96 -----------------ARDIGHCAAFYDRA------AMIAL-------PA-------DMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp -----------------HHHHHSEEEEEEES------CGGGS-------CH-------HHHHHHHHHHHHHSCSEEEEEE
T ss_pred -----------------cccCCCEEEEEECc------chhhC-------CH-------HHHHHHHHHHHHHcCCCcEEEE
Confidence 122 5799998532 22111 11 1234578999999999999777
Q ss_pred EcCCC
Q psy15212 274 VTCSL 278 (329)
Q Consensus 274 sTCS~ 278 (329)
.++..
T Consensus 139 ~~~~~ 143 (203)
T 1pjz_A 139 ITLEY 143 (203)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 66554
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-12 Score=113.92 Aligned_cols=109 Identities=23% Similarity=0.251 Sum_probs=87.9
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++.++++.+|+....
T Consensus 115 ~~~~~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------------- 180 (286)
T 3m70_A 115 AAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN------------- 180 (286)
T ss_dssp HHHHSCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-------------
T ss_pred HhhccCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-------------
Confidence 333457889999999999999999987 569999999999999999999999988999999988765
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.||+|++..+.... .... ...+|+.+.++|+|||++++.+
T Consensus 181 ------~~~~fD~i~~~~~~~~~-------------~~~~-------~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 181 ------IQENYDFIVSTVVFMFL-------------NRER-------VPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp ------CCSCEEEEEECSSGGGS-------------CGGG-------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------ccCCccEEEEccchhhC-------------CHHH-------HHHHHHHHHHhcCCCcEEEEEE
Confidence 25789999987643210 1111 3468999999999999977653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=120.00 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=85.9
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHH-------HHcCC---ceEEEecCccccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENL-------KRLNL---KATLILSDISKIN 193 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~-------~~~g~---~v~~~~~D~~~~~ 193 (329)
...+.+.+|++|||+|||+|..++.+|...+ .+|+|+|+++.+++.++++. +.+|+ .++++++|+.+++
T Consensus 166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp 245 (438)
T 3uwp_A 166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 245 (438)
T ss_dssp HHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc
Confidence 3455789999999999999999999998777 47999999999999998865 34565 3899999998865
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
... .-..||+|+++++|.. + + ..+.|.+.++.|||||+||.
T Consensus 246 ~~d----------------~~~~aDVVf~Nn~~F~---------------p-d-------l~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 246 WRE----------------RIANTSVIFVNNFAFG---------------P-E-------VDHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp HHH----------------HHHTCSEEEECCTTCC---------------H-H-------HHHHHHHHHTTSCTTCEEEE
T ss_pred ccc----------------ccCCccEEEEcccccC---------------c-h-------HHHHHHHHHHcCCCCcEEEE
Confidence 110 0036999999887641 1 1 12346677899999999986
Q ss_pred Ec
Q psy15212 274 VT 275 (329)
Q Consensus 274 sT 275 (329)
+.
T Consensus 287 sE 288 (438)
T 3uwp_A 287 SK 288 (438)
T ss_dssp SS
T ss_pred ee
Confidence 53
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=107.83 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++. ..++++.+|+..++
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~--------------- 102 (220)
T 3hnr_A 42 VNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFE--------------- 102 (220)
T ss_dssp HHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCC---------------
T ss_pred hccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcC---------------
Confidence 3457889999999999999999986 5699999999999999998865 23788899998865
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
.. +.||.|++... +..-+ .. .+..+|+.+.+.|||||.+++++....
T Consensus 103 ---~~-~~fD~v~~~~~------l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 103 ---VP-TSIDTIVSTYA------FHHLT-------DD-------EKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp ---CC-SCCSEEEEESC------GGGSC-------HH-------HHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred ---CC-CCeEEEEECcc------hhcCC-------hH-------HHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 23 78999997532 21111 11 124589999999999999999875443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=114.25 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=88.1
Q ss_pred CCCCCCeEEeecCCCchHHHHHH-HhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLL-EIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la-~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.+.++.+|||+|||+|..+..++ ...+ .+|+++|+++.+++.+++++...|+. ++++.+|+...+
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 183 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD----------- 183 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-----------
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-----------
Confidence 35788999999999999999986 3333 79999999999999999999999886 899999998865
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+. +.||.|+++.+.. ..|+ . ....++++.+.+.|||||++++++.+
T Consensus 184 -------~~-~~fD~v~~~~~~~------~~~~------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 184 -------TR-EGYDLLTSNGLNI------YEPD------D-------ARVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp -------CC-SCEEEEECCSSGG------GCCC------H-------HHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -------cc-CCeEEEEECChhh------hcCC------H-------HHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 23 7899999754322 1111 1 12345899999999999999998743
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=107.62 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=90.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++.+|||+|||+|..+..+++....+|+++|+++.+++.++++.... -.++++.+|+..++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~i~~~~~d~~~~~---------------- 102 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-PQLRWETMDVRKLD---------------- 102 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-TTCEEEECCTTSCC----------------
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC-CCcEEEEcchhcCC----------------
Confidence 3678899999999999999999864358999999999999999988642 24788999988754
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||+|+++.+....- ..+ ...|....+. .....++|+.+.++|||||++++.+.+
T Consensus 103 --~~~~~fD~v~~~~~~~~~~--~~~-~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 103 --FPSASFDVVLEKGTLDALL--AGE-RDPWTVSSEG----VHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp --SCSSCEEEEEEESHHHHHT--TTC-SCTTSCCHHH----HHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred --CCCCcccEEEECcchhhhc--ccc-ccccccccch----hHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 2457899999877643211 011 1233333222 233467899999999999999998765
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=111.36 Aligned_cols=112 Identities=22% Similarity=0.319 Sum_probs=90.3
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
........++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...++. ++++.+|+...+
T Consensus 29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------- 100 (276)
T 3mgg_A 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-------- 100 (276)
T ss_dssp HHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC--------
T ss_pred HhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC--------
Confidence 33344467899999999999999999999874 79999999999999999999999986 899999988765
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.++.||+|++... +..-++ ...+|+.+.++|||||++++.+
T Consensus 101 ----------~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 101 ----------FEDSSFDHIFVCFV------LEHLQS----------------PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ----------SCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----------CCCCCeeEEEEech------hhhcCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 34578999997542 211111 1357889999999999999875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.8e-12 Score=114.12 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=85.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC---ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL---KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~---~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.+.+|||+|||+|+.+..+++..+ .+|+++|+++..++.+++++... ++ +++++.+|+....
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l------------ 142 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI------------ 142 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH------------
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH------------
Confidence 457999999999999999998755 79999999999999999998653 33 3899999988642
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...++||+|++|+|.. .+. +...+ ..++++.+.+.|+|||.++..+.+
T Consensus 143 ----~-~~~~~fD~Ii~d~~~~-~~~----~~~l~-------------~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 143 ----A-KSENQYDVIMVDSTEP-VGP----AVNLF-------------TKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ----H-TCCSCEEEEEESCSSC-CSC----CCCCS-------------TTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ----h-hCCCCeeEEEECCCCC-CCc----chhhh-------------HHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1 1246899999999853 111 11111 135788889999999999998765
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=117.41 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=93.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC---ceEEEecCccccchhhhhhhhccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL---KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~---~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.++.+|||+|||+|+.+..+++..+ .+|+++|+|+.+++.+++++... ++ .++++.+|+....
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l----------- 183 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL----------- 183 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH-----------
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHH-----------
Confidence 3467999999999999999998755 79999999999999999998762 23 3899999987642
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC--Cccc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL--WFEE 282 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~--~~~E 282 (329)
. ...++||+|++|++.. .| |. ... .+.++++.+.+.|+|||.+++.+.+. ..++
T Consensus 184 -----~-~~~~~fDvIi~d~~~p-~~-----~~-------~~l-----~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 239 (321)
T 2pt6_A 184 -----E-NVTNTYDVIIVDSSDP-IG-----PA-------ETL-----FNQNFYEKIYNALKPNGYCVAQCESLWIHVGT 239 (321)
T ss_dssp -----H-HCCSCEEEEEEECCCS-SS-----GG-------GGG-----SSHHHHHHHHHHEEEEEEEEEEECCTTTCHHH
T ss_pred -----h-hcCCCceEEEECCcCC-CC-----cc-------hhh-----hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHH
Confidence 1 1246899999998632 11 10 000 02568899999999999999976543 3333
Q ss_pred cHHHHHHHHhhCCCcE
Q psy15212 283 SEEQAIIFSKNHKDSI 298 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~ 298 (329)
-..+++.+-+.++...
T Consensus 240 ~~~~~~~l~~~F~~v~ 255 (321)
T 2pt6_A 240 IKNMIGYAKKLFKKVE 255 (321)
T ss_dssp HHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHCCCeE
Confidence 4444444444444443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-12 Score=118.62 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=81.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeC----ChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhhhhhhcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDN----NLSRLNMISENLKRLNLK-ATLILS-DISKINLKKLYIDINK 203 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~----~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~~~~~~~ 203 (329)
+++|.+|||+|||||++|..++++ ++|+|+|+ ++.+++.+ ..+..+.+ +.++.+ |+..++
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~---------- 145 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP---------- 145 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC----------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC----------
Confidence 467899999999999999999987 48999999 55443211 11222334 778887 877643
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEES 283 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~En 283 (329)
.++||+|++|.+|+ +|.. ...... +..+|..+.++|||||.++..+ +.+++.
T Consensus 146 ----------~~~fD~V~sd~~~~-~g~~-------------~~d~~~--~l~~L~~~~~~LkpGG~~v~kv--~~~~~~ 197 (305)
T 2p41_A 146 ----------PERCDTLLCDIGES-SPNP-------------TVEAGR--TLRVLNLVENWLSNNTQFCVKV--LNPYMS 197 (305)
T ss_dssp ----------CCCCSEEEECCCCC-CSSH-------------HHHHHH--HHHHHHHHHHHCCTTCEEEEEE--SCCCSH
T ss_pred ----------cCCCCEEEECCccc-cCcc-------------hhhHHH--HHHHHHHHHHHhCCCCEEEEEe--CCCCCc
Confidence 35899999999986 5541 011111 1247888899999999888643 333222
Q ss_pred --HHHHHHHHhhCCCc
Q psy15212 284 --EEQAIIFSKNHKDS 297 (329)
Q Consensus 284 --e~vv~~~l~~~~~~ 297 (329)
.+.+..+...+..+
T Consensus 198 ~~~~~l~~l~~~f~~v 213 (305)
T 2p41_A 198 SVIEKMEALQRKHGGA 213 (305)
T ss_dssp HHHHHHHHHHHHHCCE
T ss_pred hHHHHHHHHHHHcCCE
Confidence 24444444444443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=109.98 Aligned_cols=107 Identities=22% Similarity=0.233 Sum_probs=85.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...+..++++.+|+....
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---------------- 101 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA---------------- 101 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC----------------
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc----------------
Confidence 456789999999999999999986 569999999999999999999998888999999998764
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.||.|++... .... ... ....++|+.+.++|+|||.++..+
T Consensus 102 ---~~~~fD~v~~~~~--~~~~----------~~~-------~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 102 ---FKNEFDAVTMFFS--TIMY----------FDE-------EDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp ---CCSCEEEEEECSS--GGGG----------SCH-------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cCCCccEEEEcCC--chhc----------CCH-------HHHHHHHHHHHHHcCCCeEEEEec
Confidence 2367999996321 1110 011 124568999999999999998765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=108.47 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=94.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++. ....++++.+|+...+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~---------------- 111 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLP---------------- 111 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCS----------------
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCC----------------
Confidence 457889999999999999999986 569999999999999998875 2233889999988765
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc--------
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE-------- 281 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~-------- 281 (329)
+.++.||+|++.. ++.+.++ ...+|+.+.++|+|||++++++......
T Consensus 112 --~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 167 (242)
T 3l8d_A 112 --FENEQFEAIMAIN------SLEWTEE----------------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167 (242)
T ss_dssp --SCTTCEEEEEEES------CTTSSSC----------------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGG
T ss_pred --CCCCCccEEEEcC------hHhhccC----------------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhh
Confidence 3467899999632 2222221 2467999999999999999987432211
Q ss_pred ----------ccHHHHHHHHhhCCCcEEec
Q psy15212 282 ----------ESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 282 ----------Ene~vv~~~l~~~~~~~~~~ 301 (329)
-..+.+..++++. +|+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~ 196 (242)
T 3l8d_A 168 LYGKDVVCNTMMPWEFEQLVKEQ-GFKVVD 196 (242)
T ss_dssp GGTCCCSSCCCCHHHHHHHHHHT-TEEEEE
T ss_pred hccccccccCCCHHHHHHHHHHc-CCEEEE
Confidence 2234566777775 666554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=121.63 Aligned_cols=179 Identities=16% Similarity=0.113 Sum_probs=118.5
Q ss_pred cceEEEechhHHHHhhhcC----CCCCCeEEeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 111 NGFCSIQDAAAQLAAPLLD----IRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~----~~~g~~VLDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
.|.+|--..-+.+.+.++. +.++.+|+|.|||+|++.+.+++.+. ..++|+|+++..+..++.|+...|+.
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 275 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI 275 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence 4777766666777777776 67889999999999999999988752 69999999999999999999999983
Q ss_pred --eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc--CCCCccc----CChhHHHHHHHH
Q psy15212 182 --ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR--NPDIPWL----RRKNDIKKLSKY 253 (329)
Q Consensus 182 --v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~--~p~~~~~----~~~~~~~~l~~~ 253 (329)
+.+.++|...... +.....+||+|+.|||+++...-.. ..+.+|. ..+. ...
T Consensus 276 ~~~~I~~gDtL~~d~---------------p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~-----s~~ 335 (542)
T 3lkd_A 276 ENQFLHNADTLDEDW---------------PTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPK-----SKA 335 (542)
T ss_dssp GGEEEEESCTTTSCS---------------CCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCT-----TCC
T ss_pred CccceEecceecccc---------------cccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCC-----chh
Confidence 6899999876410 0013468999999999984321110 0111221 0000 011
Q ss_pred HHHHHHHHHhcCC-CCCEEEEEcCC-CCcccc-HHHHHHHHhhCCCcE-EecCCCcccCC
Q psy15212 254 SCKILNNLWKMLK-PGGKLLFVTCS-LWFEES-EEQAIIFSKNHKDSI-RLNSPGQLLPT 309 (329)
Q Consensus 254 q~~lL~~a~~~Lk-pgG~lvysTCS-~~~~En-e~vv~~~l~~~~~~~-~~~~~~~~~p~ 309 (329)
...++.+++++|+ +||++++.+-. +.-..+ +..+.+.|-+...+. ++..|..++.+
T Consensus 336 ~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~~II~LP~~lF~~ 395 (542)
T 3lkd_A 336 DFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGLPANIFFN 395 (542)
T ss_dssp HHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEEEEEECCSSCSSS
T ss_pred hHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCceeEEEEccccccCC
Confidence 2358999999999 99998776533 221222 444444443332332 44455555553
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.4e-12 Score=115.18 Aligned_cols=130 Identities=20% Similarity=0.298 Sum_probs=93.6
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~ 194 (329)
+......++..+.+.++++|||+|||+|..|..+++.. .+|+|+|+|+.+++.+++++...+. .++++.+|+.+.+
T Consensus 13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~- 90 (285)
T 1zq9_A 13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD- 90 (285)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-
Confidence 44445555666778889999999999999999999875 5999999999999999999988776 3899999998765
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCcccc-----ccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSG-----VVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G-----~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
+ ..||.|++++|+..+. ++.+.+..... +..+|+++.. ...++|||
T Consensus 91 -----------------~--~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~--------~~m~qkEva~--r~vlkPGg 141 (285)
T 1zq9_A 91 -----------------L--PFFDTCVANLPYQISSPFVFKLLLHRPFFRCA--------ILMFQREFAL--RLVAKPGD 141 (285)
T ss_dssp -----------------C--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEE--------EEEEEHHHHH--HHHCCTTC
T ss_pred -----------------c--hhhcEEEEecCcccchHHHHHHHhcCcchhhh--------hhhhhHHHHH--HHhcCCCC
Confidence 1 3799999999987542 22211111100 0001333332 23689999
Q ss_pred EEEEEcCCC
Q psy15212 270 KLLFVTCSL 278 (329)
Q Consensus 270 ~lvysTCS~ 278 (329)
.+ |+++|+
T Consensus 142 ~~-y~~lsv 149 (285)
T 1zq9_A 142 KL-YCRLSI 149 (285)
T ss_dssp TT-CSHHHH
T ss_pred cc-cchhhh
Confidence 86 887775
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=109.72 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...+...++.+|||+|||+|..+..+++....+|+++|+++.+++.++++.. ...++++.+|+..++
T Consensus 37 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~----------- 103 (253)
T 3g5l_A 37 KKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIA----------- 103 (253)
T ss_dssp HTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCC-----------
T ss_pred HHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCC-----------
Confidence 3445556789999999999999999998744599999999999999998876 334889999988765
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.++.||+|++.- ++..-++ ..++|+.+.++|||||++++++.
T Consensus 104 -------~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 104 -------IEPDAYNVVLSSL------ALHYIAS----------------FDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -------CCTTCEEEEEEES------CGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------CCCCCeEEEEEch------hhhhhhh----------------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 3457899999743 2211111 34689999999999999999753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=111.95 Aligned_cols=130 Identities=19% Similarity=0.189 Sum_probs=89.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-----CCceEEEecCccccchhhhhhhhcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-----NLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-----g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..++.+|||+|||+|+.+..+++..+ .+|+++|+|+.+++.+++++... .-+++++.+|+..+.
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~---------- 162 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV---------- 162 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH----------
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH----------
Confidence 34568999999999999999998654 69999999999999999987532 123889999988754
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC-Cccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL-WFEE 282 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~-~~~E 282 (329)
....+++||+|++|++... + |. ..+ .+.++++.+.+.|+|||+++..+.+. ...+
T Consensus 163 ------~~~~~~~fDvIi~d~~~~~-~-----~~----------~~l--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 218 (304)
T 3bwc_A 163 ------RQTPDNTYDVVIIDTTDPA-G-----PA----------SKL--FGEAFYKDVLRILKPDGICCNQGESIWLDLE 218 (304)
T ss_dssp ------HSSCTTCEEEEEEECC---------------------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHH
T ss_pred ------HhccCCceeEEEECCCCcc-c-----cc----------hhh--hHHHHHHHHHHhcCCCcEEEEecCCcccchH
Confidence 1012568999999987421 0 10 000 12568899999999999999875442 2223
Q ss_pred cHHHHHHHHhh
Q psy15212 283 SEEQAIIFSKN 293 (329)
Q Consensus 283 ne~vv~~~l~~ 293 (329)
....+...+++
T Consensus 219 ~~~~~~~~l~~ 229 (304)
T 3bwc_A 219 LIEKMSRFIRE 229 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33334444444
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=111.96 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=87.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+.++.+|||+|||+|..+..+++....+|+++|+++.+++.+++++...+.. ++++.+|+...+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------------- 127 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-------------- 127 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--------------
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc--------------
Confidence 4678899999999999999988764369999999999999999999988873 789999988764
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCccc-CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL-RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~-~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...++.||+|+++.. +. +. ... ....++|+.+.++|||||+++++++.
T Consensus 128 ---~~~~~~fD~v~~~~~------l~------~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 128 ---MDLGKEFDVISSQFS------FH------YAFSTS-------ESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp ---CCCSSCEEEEEEESC------GG------GGGSSH-------HHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ---cCCCCCcCEEEECch------hh------hhcCCH-------HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 113578999997632 10 00 011 12456899999999999999998765
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=122.40 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=116.9
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC----------------CCEEEEEeCChhHHHHHHHH
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA----------------DIKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~----------------~~~v~avD~~~~rl~~l~~n 174 (329)
.|.++--..-+.+++.++.+.++ +|||.|||+|++.+.+++.+ ...++|+|+++..++.++.|
T Consensus 224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 47777777778888888888887 99999999999998886543 24899999999999999999
Q ss_pred HHHcCCceEE--EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCcccccccc--CCCCcccCChhH----
Q psy15212 175 LKRLNLKATL--ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRR--NPDIPWLRRKND---- 246 (329)
Q Consensus 175 ~~~~g~~v~~--~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~--~p~~~~~~~~~~---- 246 (329)
+...|+...+ .++|....+ .....+||+|++|||++....-.. ..+.+|......
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~-----------------~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~ 365 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDD-----------------QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRI 365 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSC-----------------SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEE
T ss_pred HHHhCCCcccceeccchhcCc-----------------ccccccccEEEECCCcCCccccchhhhhhhhhhcCccccccc
Confidence 9999886433 777765433 123468999999999986421110 111122111000
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC--CCcc-ccHHHHHHHHhhCCCc-EEecCCCcccCC
Q psy15212 247 -IKKLSKYSCKILNNLWKMLKPGGKLLFVTCS--LWFE-ESEEQAIIFSKNHKDS-IRLNSPGQLLPT 309 (329)
Q Consensus 247 -~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS--~~~~-Ene~vv~~~l~~~~~~-~~~~~~~~~~p~ 309 (329)
+..-...+..++.+++++|+|||++++.+-. +... -.+..+.+.|-++..+ .++..|..++.+
T Consensus 366 ~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~aII~LP~~lF~~ 433 (544)
T 3khk_A 366 LTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVECMVALPGQLFTN 433 (544)
T ss_dssp CCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEEEEEECCTTBCCS
T ss_pred ccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcHhEEEECCCCCCCC
Confidence 0000011235889999999999998877532 2222 2444555554444333 234455455543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=114.76 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=84.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHH--cCC---ceEEEecCccccchhhhhhhhccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKR--LNL---KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~--~g~---~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..+.+|||+|||+|+.+..+++..+ .+|+++|+++.+++.+++++.. .++ +++++.+|+....
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l----------- 162 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM----------- 162 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-----------
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH-----------
Confidence 4567999999999999999998755 7999999999999999999876 233 3899999987642
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...++||+|++|+|... + |. . .....++++.+.+.|+|||.++..+.+
T Consensus 163 -----~-~~~~~fD~Ii~d~~~~~-~-----~~-------~-----~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 163 -----K-QNQDAFDVIITDSSDPM-G-----PA-------E-----SLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp -----H-TCSSCEEEEEEECC-----------------------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----h-hCCCCceEEEECCCCCC-C-----cc-------h-----hhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 1 12468999999987431 1 00 0 012346889999999999999988744
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=109.31 Aligned_cols=164 Identities=14% Similarity=-0.047 Sum_probs=101.5
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC----------------------------
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL---------------------------- 180 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~---------------------------- 180 (329)
.+.+|.+|||+|||+|..+..++.....+|+|+|+|+.+++.++++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3567889999999999887766654224899999999999999998765320
Q ss_pred --ceE-EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHH
Q psy15212 181 --KAT-LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKI 257 (329)
Q Consensus 181 --~v~-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~l 257 (329)
.+. ++.+|+..... +.....++||+|++- .++.. +.........+
T Consensus 132 ~~~i~~~~~~D~~~~~~--------------~~~~~~~~fD~V~~~------~~l~~------------i~~~~~~~~~~ 179 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNP--------------LAPAVLPLADCVLTL------LAMEC------------ACCSLDAYRAA 179 (263)
T ss_dssp HHHEEEEEECCTTSSST--------------TTTCCCCCEEEEEEE------SCHHH------------HCSSHHHHHHH
T ss_pred HhhhheEEeccccCCCC--------------CCccccCCCCEeeeh------HHHHH------------hcCCHHHHHHH
Confidence 122 77888776320 000124589999952 11110 00001223568
Q ss_pred HHHHHhcCCCCCEEEEEcCCCCc------------cccHHHHHHHHhhCCCcEEecCC---CcccCCCCCCCCCCeEEEE
Q psy15212 258 LNNLWKMLKPGGKLLFVTCSLWF------------EESEEQAIIFSKNHKDSIRLNSP---GQLLPTVNKKQDYDGFFYS 322 (329)
Q Consensus 258 L~~a~~~LkpgG~lvysTCS~~~------------~Ene~vv~~~l~~~~~~~~~~~~---~~~~p~~~~~~~~~gff~a 322 (329)
|+++.++|||||+|+.++..-.. .-.++.+...+... +|+.+... ...-+.. .+.+++|+.
T Consensus 180 l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~a-GF~i~~~~~~~~~~~~~~---~~~~~~~~~ 255 (263)
T 2a14_A 180 LCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA-GFDIEQLLHSPQSYSVTN---AANNGVCCI 255 (263)
T ss_dssp HHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEEEEECCCCCTTT---CCCCCEEEE
T ss_pred HHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHC-CCEEEEEeeccccccccc---CCCCceEEE
Confidence 99999999999999999632110 01455666667665 66654321 1111111 345678888
Q ss_pred EEEecC
Q psy15212 323 LFQKRK 328 (329)
Q Consensus 323 ~l~k~~ 328 (329)
+.+|..
T Consensus 256 ~a~K~~ 261 (263)
T 2a14_A 256 VARKKP 261 (263)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 888764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=112.86 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=79.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-------eEEEecCccccch-hhhhhhhcc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-------ATLILSDISKINL-KKLYIDINK 203 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-------v~~~~~D~~~~~~-~~~~~~~~~ 203 (329)
+|.+|||+|||+|+.+..++...+++|+|+|+|+.+++.++++....+.. +++.+.|+..-.. ..+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~----- 122 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVR----- 122 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHH-----
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhh-----
Confidence 57899999999998777666544479999999999999999998877643 4566777632110 0000
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+.+++||+|+|-- ++ .|.+..++ +..+|+++.++|||||+++.+|..
T Consensus 123 ------~~~~~~~FD~V~~~~------~l------hy~~~~~~-------~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 123 ------EVFYFGKFNIIDWQF------AI------HYSFHPRH-------YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp ------TTCCSSCEEEEEEES------CG------GGTCSTTT-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------ccccCCCeeEEEECc------hH------HHhCCHHH-------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 112356899998521 11 11112122 246899999999999999998763
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=106.68 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=84.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..++.+|||+|||+|..+..+++. .+|+++|+++.+++.+++++...+..++++.+|+...+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------------- 92 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE---------------- 92 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC----------------
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC----------------
Confidence 345789999999999999999986 69999999999999999999988867899999988764
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+.||.|++...+ +. +..+.. ....+|+.+.++|+|||++++++.
T Consensus 93 ---~~~~fD~v~~~~~~-----~~------~~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 93 ---LPEPVDAITILCDS-----LN------YLQTEA-------DVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp ---CSSCEEEEEECTTG-----GG------GCCSHH-------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCcCEEEEeCCc-----hh------hcCCHH-------HHHHHHHHHHHhcCCCeEEEEEcC
Confidence 13689999975311 11 111111 235678999999999999998654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.6e-12 Score=110.51 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=83.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCC-hhHHHHH---HHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNN-LSRLNMI---SENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~-~~rl~~l---~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.+++++|||+|||+|..+..+++..+ ..|+|+|+| +.+++.+ ++++.+.|+. +.++.+|+..++
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~---------- 91 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP---------- 91 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC----------
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh----------
Confidence 36788999999999999999997655 689999999 6666655 8888888886 899999998765
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+ ...+|.|.++.|... ...........+|+.+.++|||||++++++
T Consensus 92 ------~~~-~d~v~~i~~~~~~~~-----------------~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 92 ------FEL-KNIADSISILFPWGT-----------------LLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ------GGG-TTCEEEEEEESCCHH-----------------HHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ------hhc-cCeEEEEEEeCCCcH-----------------HhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 111 256888888776321 111111123467999999999999999844
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.2e-11 Score=105.47 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=94.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
+.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+. .++++.+|+..+.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------------- 128 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR----------------- 128 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-----------------
T ss_pred CCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-----------------
Confidence 349999999999999999863 46999999999999999999987654 3899999998764
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc-------cc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE-------ES 283 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~-------En 283 (329)
....||+|++... +..- .+++ ...+|+.+.++|||||+++..+.+.... -.
T Consensus 129 --~~~~fD~v~~~~~------l~~~-------~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3lcc_A 129 --PTELFDLIFDYVF------FCAI-------EPEM-------RPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVD 186 (235)
T ss_dssp --CSSCEEEEEEESS------TTTS-------CGGG-------HHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCC
T ss_pred --CCCCeeEEEEChh------hhcC-------CHHH-------HHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCC
Confidence 3458999996432 1111 1111 3467999999999999999876544322 24
Q ss_pred HHHHHHHHhhCCCcEEec
Q psy15212 284 EEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 284 e~vv~~~l~~~~~~~~~~ 301 (329)
.+.+..+++.. +|+.+.
T Consensus 187 ~~~~~~~l~~~-Gf~~~~ 203 (235)
T 3lcc_A 187 VSTFEEVLVPI-GFKAVS 203 (235)
T ss_dssp HHHHHHHHGGG-TEEEEE
T ss_pred HHHHHHHHHHc-CCeEEE
Confidence 56677777775 666543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=109.79 Aligned_cols=109 Identities=11% Similarity=0.023 Sum_probs=81.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH------------------cCCceEEEecCcc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR------------------LNLKATLILSDIS 190 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~------------------~g~~v~~~~~D~~ 190 (329)
.+.++.+|||+|||+|..+..+|+. +..|+|+|+|+.+++.++++... .+..++++++|+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 3467889999999999999999986 56999999999999999776531 1234899999998
Q ss_pred ccchhhhhhhhcccccccccccC-CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 191 KINLKKLYIDINKKTNNRFRFYK-NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.++ .. .+.||.|++-. ++..-| .. ....+++++.++|||||
T Consensus 144 ~l~------------------~~~~~~FD~V~~~~------~l~~l~-------~~-------~~~~~l~~~~~~LkpGG 185 (252)
T 2gb4_A 144 DLP------------------RANIGKFDRIWDRG------ALVAIN-------PG-------DHDRYADIILSLLRKEF 185 (252)
T ss_dssp TGG------------------GGCCCCEEEEEESS------STTTSC-------GG-------GHHHHHHHHHHTEEEEE
T ss_pred cCC------------------cccCCCEEEEEEhh------hhhhCC-------HH-------HHHHHHHHHHHHcCCCe
Confidence 875 12 26899999532 221111 11 13457899999999999
Q ss_pred EEEEEcC
Q psy15212 270 KLLFVTC 276 (329)
Q Consensus 270 ~lvysTC 276 (329)
++++.|.
T Consensus 186 ~l~l~~~ 192 (252)
T 2gb4_A 186 QYLVAVL 192 (252)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9976653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.25 E-value=8.9e-12 Score=110.96 Aligned_cols=132 Identities=13% Similarity=0.011 Sum_probs=96.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..+..+++....+|+++|+++.+++.+++++...+.. ++++.+|+..+.
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------------- 141 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT---------------- 141 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC----------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC----------------
Confidence 368899999999999999988765569999999999999999999877533 788999987754
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc---------
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF--------- 280 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~--------- 280 (329)
...+.||+|+++.. +..-+ .. ....+|+.+.++|+|||++++++.....
T Consensus 142 --~~~~~fD~v~~~~~------l~~~~-------~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 199 (241)
T 2ex4_A 142 --PEPDSYDVIWIQWV------IGHLT-------DQ-------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDS 199 (241)
T ss_dssp --CCSSCEEEEEEESC------GGGSC-------HH-------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTT
T ss_pred --CCCCCEEEEEEcch------hhhCC-------HH-------HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCC
Confidence 23468999997632 21111 11 1346899999999999999997642210
Q ss_pred --cccHHHHHHHHhhCCCcEEec
Q psy15212 281 --EESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 281 --~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.-+.+.+..++++. +|+.+.
T Consensus 200 ~~~~~~~~~~~~l~~a-Gf~~~~ 221 (241)
T 2ex4_A 200 SVCRDLDVVRRIICSA-GLSLLA 221 (241)
T ss_dssp EEEEBHHHHHHHHHHT-TCCEEE
T ss_pred cccCCHHHHHHHHHHc-CCeEEE
Confidence 11566677777776 565443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9e-12 Score=117.42 Aligned_cols=112 Identities=20% Similarity=0.166 Sum_probs=86.9
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.+...++.+|||+|||+|..+..+++....+|+|+|+++ +++.++++++.+|+. ++++.+|+.++.
T Consensus 59 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 126 (340)
T 2fyt_A 59 NPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH----------- 126 (340)
T ss_dssp CGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-----------
T ss_pred hhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-----------
Confidence 344678899999999999999999986336999999996 999999999999983 899999998765
Q ss_pred ccccccccCCCCCCEEEEccC-CccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLP-CTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~P-Csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..++||+|++++. +... ... ....+|..+.++|||||+++.+.|+
T Consensus 127 -------~~~~~~D~Ivs~~~~~~l~-------------~~~-------~~~~~l~~~~~~LkpgG~lip~~~~ 173 (340)
T 2fyt_A 127 -------LPVEKVDVIISEWMGYFLL-------------FES-------MLDSVLYAKNKYLAKGGSVYPDICT 173 (340)
T ss_dssp -------CSCSCEEEEEECCCBTTBT-------------TTC-------HHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred -------CCCCcEEEEEEcCchhhcc-------------CHH-------HHHHHHHHHHhhcCCCcEEEcccce
Confidence 24478999998762 2200 011 1235788889999999999855444
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=106.01 Aligned_cols=112 Identities=17% Similarity=0.180 Sum_probs=85.9
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~ 201 (329)
+...+....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++ .+.. ++++.+|+..+.
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~-------- 103 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT-------- 103 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--------
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--------
Confidence 3333334677889999999999999999987 5699999999999999888 5544 899999987653
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..+.||+|++.. ++.+-++ .....+|+.+.++|+|||++++++.+.
T Consensus 104 -----------~~~~~D~v~~~~------~l~~~~~--------------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 104 -----------PDRQWDAVFFAH------WLAHVPD--------------DRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp -----------CSSCEEEEEEES------CGGGSCH--------------HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -----------CCCceeEEEEec------hhhcCCH--------------HHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 457899999742 2221111 123568999999999999999997654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=113.03 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=85.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhC-C-CEEEEEeCChhHHHHHHHHHHHc---CCceEEEecCccccchhhhhhhhcccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIA-D-IKLISVDNNLSRLNMISENLKRL---NLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~-~-~~v~avD~~~~rl~~l~~n~~~~---g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.++.+|||+|||+|..+..+++.. + .+|+|+|+|+.+++.++++++.. .-.++++++|+..++...
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~--------- 105 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG--------- 105 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC---------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc---------
Confidence 578899999999999999999865 3 79999999999999999999987 234899999998865100
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+. ....++||.|++..... |. . ...+++.+.+.|+|||+|++.+++
T Consensus 106 ~~---~~~~~~fD~V~~~~~l~------------~~-~----------~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 106 AD---SVDKQKIDMITAVECAH------------WF-D----------FEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp TT---TTTSSCEEEEEEESCGG------------GS-C----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cc---cccCCCeeEEeHhhHHH------------Hh-C----------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 00 00126899999743211 11 1 346899999999999999885443
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.7e-11 Score=109.16 Aligned_cols=114 Identities=14% Similarity=0.008 Sum_probs=79.6
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.+...+.+.+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++....+...+...+.....
T Consensus 36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~--------- 105 (261)
T 3iv6_A 36 NDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPK--------- 105 (261)
T ss_dssp HHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCG---------
T ss_pred HHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhccceeeeeeccccccc---------
Confidence 3445667888999999999999999999986 469999999999999999998765222233222220000
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+.||+|+++.... + ...+ .....+..+.++| |||+|+.|..
T Consensus 106 ---------~~~~~fD~Vv~~~~l~------~-------~~~~-------~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 106 ---------ELAGHFDFVLNDRLIN------R-------FTTE-------EARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp ---------GGTTCCSEEEEESCGG------G-------SCHH-------HHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ---------ccCCCccEEEEhhhhH------h-------CCHH-------HHHHHHHHHHHhC-cCcEEEEEec
Confidence 1246899999875421 0 1111 2345788888899 9999998854
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=109.60 Aligned_cols=105 Identities=20% Similarity=0.293 Sum_probs=85.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.+++++...|+. ++++.+|+..+.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------------- 130 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA---------------- 130 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG----------------
T ss_pred CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh----------------
Confidence 3679999999999999999987 669999999999999999999999984 899999998764
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. +.++.||+|++... +..-++ ...+|+.+.++|||||++++++.
T Consensus 131 ~-~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 131 S-HLETPVDLILFHAV------LEWVAD----------------PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp G-GCSSCEEEEEEESC------GGGCSC----------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred h-hcCCCceEEEECch------hhcccC----------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 1 24578999997532 222221 24589999999999999998764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-11 Score=99.66 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=90.6
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+.+.++.+|||+|||+|..+..+++... +++++|+++.+++.++++ .-.++++.+| .+
T Consensus 12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~------------- 70 (170)
T 3i9f_A 12 NIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----FDSVITLSDP---KE------------- 70 (170)
T ss_dssp HHHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----CTTSEEESSG---GG-------------
T ss_pred hcCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CC-------------
Confidence 34567888999999999999999998765 999999999999999988 2247888888 22
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc----
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE---- 282 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E---- 282 (329)
+..+.||.|++..... .-++ ...+++++.+.|||||++++++......+
T Consensus 71 -----~~~~~~D~v~~~~~l~------~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 123 (170)
T 3i9f_A 71 -----IPDNSVDFILFANSFH------DMDD----------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPP 123 (170)
T ss_dssp -----SCTTCEEEEEEESCST------TCSC----------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC
T ss_pred -----CCCCceEEEEEccchh------cccC----------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCch
Confidence 2457899999753321 1111 24689999999999999999875433211
Q ss_pred -----cHHHHHHHHhhCCCcEEec
Q psy15212 283 -----SEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 283 -----ne~vv~~~l~~~~~~~~~~ 301 (329)
..+.+..+++ +|+.+.
T Consensus 124 ~~~~~~~~~~~~~l~---Gf~~~~ 144 (170)
T 3i9f_A 124 LSIRMDEKDYMGWFS---NFVVEK 144 (170)
T ss_dssp GGGCCCHHHHHHHTT---TEEEEE
T ss_pred HhhhcCHHHHHHHHh---CcEEEE
Confidence 3455666666 676554
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-11 Score=106.67 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=87.4
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
|.....-....+.+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++ .-.++++.+|+....
T Consensus 18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~-- 91 (259)
T 2p35_A 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK-- 91 (259)
T ss_dssp GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC--
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC--
Confidence 333333344455677889999999999999999998754 6999999999999999887 223788899987653
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.++.||+|++... +..-+ ....+|+.+.+.|||||++++++
T Consensus 92 -----------------~~~~fD~v~~~~~------l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 92 -----------------PAQKADLLYANAV------FQWVP----------------DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp -----------------CSSCEEEEEEESC------GGGST----------------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----------------ccCCcCEEEEeCc------hhhCC----------------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 3468999997432 11111 13468999999999999999987
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
..
T Consensus 133 ~~ 134 (259)
T 2p35_A 133 PD 134 (259)
T ss_dssp EC
T ss_pred CC
Confidence 43
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-12 Score=115.75 Aligned_cols=93 Identities=22% Similarity=0.311 Sum_probs=75.6
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...|.+++|.+|||+|||+|+.+..+++..+ ++|+|+|+|+.+++.+++|++.+|-.++++++|+..+.. .+
T Consensus 18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~-~l----- 91 (301)
T 1m6y_A 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF-LL----- 91 (301)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH-HH-----
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHH-HH-----
Confidence 44566788999999999999999999999874 799999999999999999999888458999999887540 00
Q ss_pred ccccccccccCCCCCCEEEEccCCccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.......||.|++|+|||+.
T Consensus 92 -------~~~g~~~~D~Vl~D~gvSs~ 111 (301)
T 1m6y_A 92 -------KTLGIEKVDGILMDLGVSTY 111 (301)
T ss_dssp -------HHTTCSCEEEEEEECSCCHH
T ss_pred -------HhcCCCCCCEEEEcCccchh
Confidence 00011579999999999853
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-12 Score=110.33 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=82.9
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHH----HHcCCc-eEEEecCccccchhhhhhh
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENL----KRLNLK-ATLILSDISKINLKKLYID 200 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~----~~~g~~-v~~~~~D~~~~~~~~~~~~ 200 (329)
.+.+.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+.++. ...++. ++++++|+..++
T Consensus 22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~------- 94 (218)
T 3mq2_A 22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP------- 94 (218)
T ss_dssp HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-------
T ss_pred HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-------
Confidence 34577899999999999999999999874 79999999999888654443 345664 899999998865
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+..+. |.|.+..+.. ....++...+..+|+.+.++|||||+++++.
T Consensus 95 -----------~~~~~-d~v~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 95 -----------PLSGV-GELHVLMPWG-----------------SLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp -----------SCCCE-EEEEEESCCH-----------------HHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred -----------CCCCC-CEEEEEccch-----------------hhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 23344 7777555421 1111122223568999999999999999853
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=116.37 Aligned_cols=112 Identities=15% Similarity=0.218 Sum_probs=86.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHc-----C----CceEEEecCccccchhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL-----N----LKATLILSDISKINLKKLY 198 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~-----g----~~v~~~~~D~~~~~~~~~~ 198 (329)
+.+|.+|||+|||+|..+..+++..+ ++|+++|+++.+++.+++++++. | -.++++.+|+..+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~--- 157 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA--- 157 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC---
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc---
Confidence 56789999999999999999998853 69999999999999999998876 4 3489999999875200
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.+ ..+.++.||+|+++.. +...++ ...+|+++.++|||||+|++++
T Consensus 158 ------~~---~~~~~~~fD~V~~~~~------l~~~~d----------------~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 158 ------EP---EGVPDSSVDIVISNCV------CNLSTN----------------KLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp ------BS---CCCCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------cc---CCCCCCCEEEEEEccc------hhcCCC----------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 00 0134578999997643 221111 2468999999999999999875
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.1e-11 Score=101.67 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=93.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+.+|||+|||+|..+..+++. +.+|+|+|+++.+++.++++.. .++++.+|+..++ +
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~------------------~ 98 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHP----SVTFHHGTITDLS------------------D 98 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHCT----TSEEECCCGGGGG------------------G
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC----CCeEEeCcccccc------------------c
Confidence 789999999999999999986 5599999999999999988732 4789999988765 3
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc------------
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF------------ 280 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~------------ 280 (329)
.++.||+|++.. ++.+-+ .++ ...+|+.+.++|+|||++++++.....
T Consensus 99 ~~~~fD~v~~~~------~l~~~~-------~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 158 (203)
T 3h2b_A 99 SPKRWAGLLAWY------SLIHMG-------PGE-------LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY 158 (203)
T ss_dssp SCCCEEEEEEES------SSTTCC-------TTT-------HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEE
T ss_pred CCCCeEEEEehh------hHhcCC-------HHH-------HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhc
Confidence 457899999743 222211 111 356899999999999999998755332
Q ss_pred cccHHHHHHHHhhCCCcEEec
Q psy15212 281 EESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~ 301 (329)
.-..+.+..++++. +|+.+.
T Consensus 159 ~~~~~~~~~~l~~~-Gf~~~~ 178 (203)
T 3h2b_A 159 RWPLPELAQALETA-GFQVTS 178 (203)
T ss_dssp ECCHHHHHHHHHHT-TEEEEE
T ss_pred cCCHHHHHHHHHHC-CCcEEE
Confidence 12356677777776 676554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-11 Score=107.30 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++. .++++.+|+..++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~----------------- 106 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFS----------------- 106 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCC-----------------
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCEEEECChHHCC-----------------
Confidence 456899999999999999999764 599999999999999998754 4788999998865
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.++.||+|++... ++.. ..+.+ ....+|+.+.++|||||+++.++
T Consensus 107 --~~~~fD~v~~~~~-----~l~~------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 --LGRRFSAVTCMFS-----SIGH------LAGQA-------ELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp --CSCCEEEEEECTT-----GGGG------SCHHH-------HHHHHHHHHHHTEEEEEEEEECC
T ss_pred --ccCCcCEEEEcCc-----hhhh------cCCHH-------HHHHHHHHHHHhcCCCcEEEEEe
Confidence 2578999996431 1111 11111 23568999999999999999864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=112.12 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=80.1
Q ss_pred CcccccceEEEechhH---HHHh---hhcCCCCCCeEEeecCCCchHHHHHHHhCC------------------------
Q psy15212 106 IPKFFNGFCSIQDAAA---QLAA---PLLDIRSGMYVLDACSAPGGKTCHLLEIAD------------------------ 155 (329)
Q Consensus 106 ~~~~~~G~~~~Qd~~s---~l~~---~~l~~~~g~~VLDlcag~G~kt~~la~~~~------------------------ 155 (329)
..+++.|+-..|..+. .+++ .+....++..|||+|||+|++++.+|....
T Consensus 163 ~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~ 242 (385)
T 3ldu_A 163 DALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWW 242 (385)
T ss_dssp SCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHH
T ss_pred ChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHH
Confidence 3566777765553331 1333 344567889999999999999999887531
Q ss_pred ---------------CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCC
Q psy15212 156 ---------------IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFD 218 (329)
Q Consensus 156 ---------------~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 218 (329)
..|+|+|+|+.+++.+++|++..|+. +++.++|+.++. ....||
T Consensus 243 ~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~-------------------~~~~~D 303 (385)
T 3ldu_A 243 DVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFK-------------------SEDEFG 303 (385)
T ss_dssp HHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCC-------------------CSCBSC
T ss_pred HHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcC-------------------cCCCCc
Confidence 37999999999999999999999995 899999998865 235899
Q ss_pred EEEEccCCc
Q psy15212 219 RILADLPCT 227 (329)
Q Consensus 219 ~Vl~D~PCs 227 (329)
+|++|||+.
T Consensus 304 ~Iv~NPPyg 312 (385)
T 3ldu_A 304 FIITNPPYG 312 (385)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999999965
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.2e-11 Score=106.13 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChh------HHHHHHHHHHHcCCc--eEEEecC-c
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLS------RLNMISENLKRLNLK--ATLILSD-I 189 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~------rl~~l~~n~~~~g~~--v~~~~~D-~ 189 (329)
.......+.+.+|.+|||+|||+|..+..+++..+ .+|+++|+|+. +++.++++++..++. ++++.+| .
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 33444556788999999999999999999998863 79999999997 999999999998873 8899998 3
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
....+ + +.++.||+|++..... +.++ + ..+++....+++|||
T Consensus 112 ~~~~~---------------~-~~~~~fD~v~~~~~l~------~~~~------~----------~~~~~~~~~l~~~gG 153 (275)
T 3bkx_A 112 SDDLG---------------P-IADQHFDRVVLAHSLW------YFAS------A----------NALALLFKNMAAVCD 153 (275)
T ss_dssp TTCCG---------------G-GTTCCCSEEEEESCGG------GSSC------H----------HHHHHHHHHHTTTCS
T ss_pred hhccC---------------C-CCCCCEEEEEEccchh------hCCC------H----------HHHHHHHHHHhCCCC
Confidence 22110 1 2457899999754322 1111 1 125556666777899
Q ss_pred EEEEEcCCCC
Q psy15212 270 KLLFVTCSLW 279 (329)
Q Consensus 270 ~lvysTCS~~ 279 (329)
++++++.+..
T Consensus 154 ~l~~~~~~~~ 163 (275)
T 3bkx_A 154 HVDVAEWSMQ 163 (275)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEEecCC
Confidence 9999876543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=8e-12 Score=119.35 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=89.0
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+...++.+|||+|||+|..+..+++....+|+|+|++ .+++.++++++.+|+. ++++.+|+.++.
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 125 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS------------ 125 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC------------
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC------------
Confidence 3456789999999999999999998633599999999 9999999999999986 899999998765
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+ .++||+|++++..... . ... ....++..+.++|||||.++.+.+++.
T Consensus 126 ------~-~~~~D~Iv~~~~~~~l----~--------~e~-------~~~~~l~~~~~~LkpgG~li~~~~~~~ 173 (376)
T 3r0q_C 126 ------L-PEKVDVIISEWMGYFL----L--------RES-------MFDSVISARDRWLKPTGVMYPSHARMW 173 (376)
T ss_dssp ------C-SSCEEEEEECCCBTTB----T--------TTC-------THHHHHHHHHHHEEEEEEEESSEEEEE
T ss_pred ------c-CCcceEEEEcChhhcc----c--------chH-------HHHHHHHHHHhhCCCCeEEEEecCeEE
Confidence 2 2789999997632211 0 001 124578888899999999998776633
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=107.42 Aligned_cols=107 Identities=23% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++. +.+++++|+++.+++.+++++...+..++++.+|+...+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------------------ 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN------------------ 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC------------------
Confidence 6789999999999999999986 459999999999999999999988877889999988764
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.. +.||+|++..- ++.+- .+.. ...++|+.+.++|+|||++++++.
T Consensus 98 ~~-~~fD~v~~~~~-----~l~~~------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 98 IN-RKFDLITCCLD-----STNYI------IDSD-------DLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CS-CCEEEEEECTT-----GGGGC------CSHH-------HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cc-CCceEEEEcCc-----ccccc------CCHH-------HHHHHHHHHHHhcCCCcEEEEEec
Confidence 23 68999997430 11111 1111 245689999999999999998643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=115.09 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=88.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..++.+|||+|||+|..+..+++....+|+|+|+| .+++.++++++..|+. ++++.+|+....
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------------- 128 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE-------------- 128 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--------------
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--------------
Confidence 45788999999999999999998733699999999 5999999999999986 899999998865
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
++.++||+|++++...... + ... ...++..+.++|||||+++.+.+++.
T Consensus 129 ----~~~~~fD~Iis~~~~~~l~----~--------~~~-------~~~~l~~~~r~LkpgG~li~~~~~~~ 177 (349)
T 3q7e_A 129 ----LPVEKVDIIISEWMGYCLF----Y--------ESM-------LNTVLHARDKWLAPDGLIFPDRATLY 177 (349)
T ss_dssp ----CSSSCEEEEEECCCBBTBT----B--------TCC-------HHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred ----CCCCceEEEEEcccccccc----C--------chh-------HHHHHHHHHHhCCCCCEEccccceEE
Confidence 3457899999986533110 0 011 23578888899999999987766543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=111.98 Aligned_cols=113 Identities=20% Similarity=0.290 Sum_probs=87.1
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC----CceEEEecCccccchhhhhhhh
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN----LKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g----~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..+.+.++ +|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+ ..++++.+|+..++
T Consensus 77 ~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 146 (299)
T 3g2m_A 77 TRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-------- 146 (299)
T ss_dssp HHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC--------
T ss_pred HhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC--------
Confidence 33444444 9999999999999999986 5699999999999999999999887 34899999998865
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.++.||.|++.. +++. + ..+ ..+..+|+.+.++|||||+|++++...
T Consensus 147 -----------~~~~fD~v~~~~-----~~~~-~------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 147 -----------LDKRFGTVVISS-----GSIN-E------LDE-------ADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp -----------CSCCEEEEEECH-----HHHT-T------SCH-------HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -----------cCCCcCEEEECC-----cccc-c------CCH-------HHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 257899998521 1111 0 111 124578999999999999999987654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=113.52 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=86.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC-----CceEEEecCccccchhhhhhhhccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN-----LKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g-----~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.++.+|||+|||+|+.+..+++..+ .+|+++|+++.+++.+++++...+ -+++++.+|+....
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l----------- 145 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL----------- 145 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH-----------
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHH-----------
Confidence 4567999999999999999998654 799999999999999999987643 23889999987643
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.. ..++||+|++|++.. .|. . ..+ ...++++.+.+.|+|||.++..+++.
T Consensus 146 -----~~-~~~~fD~Ii~d~~~~-~~~-----~-------~~l-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 146 -----EN-VTNTYDVIIVDSSDP-IGP-----A-------ETL-----FNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp -----HH-CCSCEEEEEEECCCT-TTG-----G-------GGG-----SSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred -----Hh-CCCCceEEEEcCCCC-CCc-----c-------hhh-----hHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 11 246899999998643 111 0 000 12468899999999999999987763
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=108.61 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=82.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++ ...++++.+|+....
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~---------------- 104 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN----APHADVYEWNGKGEL---------------- 104 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSC----------------
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh----CCCceEEEcchhhcc----------------
Confidence 467889999999999999999987 56999999999999999988 224889999985322
Q ss_pred cccC-CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 210 RFYK-NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 210 ~~~~-~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
+ +. ++.||+|++.+. +..+|+++.++|||||+++..... .+.+.+.
T Consensus 105 ~-~~~~~~fD~v~~~~~----------------------------~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~ 151 (226)
T 3m33_A 105 P-AGLGAPFGLIVSRRG----------------------------PTSVILRLPELAAPDAHFLYVGPR----LNVPEVP 151 (226)
T ss_dssp C-TTCCCCEEEEEEESC----------------------------CSGGGGGHHHHEEEEEEEEEEESS----SCCTHHH
T ss_pred C-CcCCCCEEEEEeCCC----------------------------HHHHHHHHHHHcCCCcEEEEeCCc----CCHHHHH
Confidence 1 23 578999997521 124578888999999999933222 2333455
Q ss_pred HHHhhC
Q psy15212 289 IFSKNH 294 (329)
Q Consensus 289 ~~l~~~ 294 (329)
..+.+.
T Consensus 152 ~~l~~~ 157 (226)
T 3m33_A 152 ERLAAV 157 (226)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 566654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=111.32 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=79.1
Q ss_pred CcccccceEEEechhH---HHHh---hhcCCCCCCeEEeecCCCchHHHHHHHhCC------------------------
Q psy15212 106 IPKFFNGFCSIQDAAA---QLAA---PLLDIRSGMYVLDACSAPGGKTCHLLEIAD------------------------ 155 (329)
Q Consensus 106 ~~~~~~G~~~~Qd~~s---~l~~---~~l~~~~g~~VLDlcag~G~kt~~la~~~~------------------------ 155 (329)
.+.++.|+-..|..+. .+++ .+....++..|||+|||+|++++.+|....
T Consensus 162 ~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~ 241 (384)
T 3ldg_A 162 PSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVT 241 (384)
T ss_dssp SCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHH
T ss_pred CcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHH
Confidence 3556677655443331 2333 344567899999999999999998886432
Q ss_pred ---------------CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCC
Q psy15212 156 ---------------IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFD 218 (329)
Q Consensus 156 ---------------~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 218 (329)
.+|+|+|+|+.+++.+++|++..|+. +++.++|+.++. ....||
T Consensus 242 ~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~-------------------~~~~fD 302 (384)
T 3ldg_A 242 RVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFK-------------------TNKING 302 (384)
T ss_dssp HHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCC-------------------CCCCSC
T ss_pred HHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCC-------------------ccCCcC
Confidence 35999999999999999999999995 899999998865 235899
Q ss_pred EEEEccCCc
Q psy15212 219 RILADLPCT 227 (329)
Q Consensus 219 ~Vl~D~PCs 227 (329)
.|++|||+.
T Consensus 303 ~Iv~NPPYG 311 (384)
T 3ldg_A 303 VLISNPPYG 311 (384)
T ss_dssp EEEECCCCT
T ss_pred EEEECCchh
Confidence 999999985
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=113.68 Aligned_cols=113 Identities=15% Similarity=0.079 Sum_probs=87.9
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.+...++.+|||+|||+|..+..+++....+|+|+|+++ +++.++++++.+|+. ++++.+|+....
T Consensus 45 ~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----------- 112 (348)
T 2y1w_A 45 NHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----------- 112 (348)
T ss_dssp TGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-----------
T ss_pred ccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-----------
Confidence 344568899999999999999999986336999999996 889999999999984 899999988764
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
..++||+|+++++..... .+. ..+.+..+.++|||||.++.+++++.
T Consensus 113 --------~~~~~D~Ivs~~~~~~~~-------------~~~-------~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (348)
T 2y1w_A 113 --------LPEQVDIIISEPMGYMLF-------------NER-------MLESYLHAKKYLKPSGNMFPTIGDVH 159 (348)
T ss_dssp --------CSSCEEEEEECCCBTTBT-------------TTS-------HHHHHHHGGGGEEEEEEEESCEEEEE
T ss_pred --------CCCceeEEEEeCchhcCC-------------hHH-------HHHHHHHHHhhcCCCeEEEEecCcEE
Confidence 235799999887633111 011 23456778899999999997776654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=105.86 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=85.1
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.+..++...++.+|||+|||+|..+..+++....+|+++|+++.+++.++++.... .++++.+|+...+
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~d~~~~~--------- 102 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT--GITYERADLDKLH--------- 102 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS--SEEEEECCGGGCC---------
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC--CceEEEcChhhcc---------
Confidence 34455666788999999999999999999863249999999999999998876542 3788889987754
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+..+.||+|++... +...++ ...+|+.+.++|+|||++++++
T Consensus 103 ---------~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 103 ---------LPQDSFDLAYSSLA------LHYVED----------------VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp ---------CCTTCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------CCCCCceEEEEecc------ccccch----------------HHHHHHHHHHhcCcCcEEEEEe
Confidence 24578999997432 211111 2468999999999999999986
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-11 Score=102.80 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=82.5
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+.++.+|||+|||+|..+..+++....+|+|+|+++.+++.+++|+. .++++.+|+..++
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~--------------- 108 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS--------------- 108 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC---------------
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHCC---------------
Confidence 456788999999999999999998622589999999999999999876 5788999987643
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAI 288 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~ 288 (329)
+.||.|++|||..... . ....++++.+.+.+ |+ +|+.|. + .....+.
T Consensus 109 ------~~~D~v~~~~p~~~~~-------------~-------~~~~~~l~~~~~~~--g~--~~~~~~--~-~~~~~~~ 155 (200)
T 1ne2_A 109 ------GKYDTWIMNPPFGSVV-------------K-------HSDRAFIDKAFETS--MW--IYSIGN--A-KARDFLR 155 (200)
T ss_dssp ------CCEEEEEECCCC---------------------------CHHHHHHHHHHE--EE--EEEEEE--G-GGHHHHH
T ss_pred ------CCeeEEEECCCchhcc-------------C-------chhHHHHHHHHHhc--Cc--EEEEEc--C-chHHHHH
Confidence 5799999999965210 0 01235678888877 33 666663 2 3445556
Q ss_pred HHHhhC
Q psy15212 289 IFSKNH 294 (329)
Q Consensus 289 ~~l~~~ 294 (329)
..+...
T Consensus 156 ~~~~~~ 161 (200)
T 1ne2_A 156 REFSAR 161 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 666554
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=111.94 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC---ceEEEecCccccchhhhhhhhccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL---KATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~---~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..+.+|||+|||+|+.+..+++..+ .+|+++|+++.+++.+++++... ++ +++++.+|+....
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l----------- 175 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL----------- 175 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH-----------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHH-----------
Confidence 3457999999999999999998755 79999999999999999998764 33 3899999987642
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
. ...++||+|++|++.. .+ |. ..+ ...++++.+.+.|+|||.++..+.+.
T Consensus 176 -----~-~~~~~fD~Ii~d~~~~-~~-----~~----------~~l--~t~~~l~~~~~~LkpgG~lv~~~~~~ 225 (314)
T 2b2c_A 176 -----K-NHKNEFDVIITDSSDP-VG-----PA----------ESL--FGQSYYELLRDALKEDGILSSQGESV 225 (314)
T ss_dssp -----H-HCTTCEEEEEECCC-------------------------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred -----H-hcCCCceEEEEcCCCC-CC-----cc----------hhh--hHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 1 1346899999998632 10 00 000 12578999999999999999987554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=106.35 Aligned_cols=108 Identities=9% Similarity=0.021 Sum_probs=82.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+.++|||+|||+|..++.++...+ .+++|+|+|+.+++.+++|+.+.|+...+...|.....
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~---------------- 111 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDV---------------- 111 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHH----------------
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccC----------------
Confidence 4467999999999999999987766 79999999999999999999999987544446654322
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE-cCCCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV-TCSLW 279 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys-TCS~~ 279 (329)
..+.||+|+.- .+.++.+.+...+.+.++.|+|||.+|-. |-|+.
T Consensus 112 ---~~~~~DvVLa~----------------------k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~ 157 (200)
T 3fzg_A 112 ---YKGTYDVVFLL----------------------KMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLS 157 (200)
T ss_dssp ---TTSEEEEEEEE----------------------TCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC
T ss_pred ---CCCCcChhhHh----------------------hHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhc
Confidence 45789999941 13333355556677899999999977633 34544
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-11 Score=111.22 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=81.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC------------------------------
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL------------------------------ 180 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~------------------------------ 180 (329)
++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.+++++...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 688999999999999999999876 7999999999999999999876541
Q ss_pred -----------------------------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccc
Q psy15212 181 -----------------------------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGV 231 (329)
Q Consensus 181 -----------------------------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~ 231 (329)
.++++.+|+..... .+ .....+.||+|++...
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~-~~------------~~~~~~~fD~I~~~~v------ 186 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD-DL------------VEAQTPEYDVVLCLSL------ 186 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSH-HH------------HTTCCCCEEEEEEESC------
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCcc-cc------------ccccCCCcCEEEEChH------
Confidence 26777777654320 00 0013578999996321
Q ss_pred cccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 232 VRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 232 ~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ .|. .+..-.....++++.+.++|+|||+|+..+..
T Consensus 187 l------~~i----hl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 187 T------KWV----HLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP 222 (292)
T ss_dssp H------HHH----HHHHHHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred H------HHh----hhcCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 0 010 11112234567999999999999999987543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=108.15 Aligned_cols=134 Identities=14% Similarity=0.066 Sum_probs=96.3
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+...++.+|||+|||+|..+..+++....+|+++|+++.+++.+++++... -.++++.+|+...+
T Consensus 88 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~------------- 153 (254)
T 1xtp_A 88 SLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETAT------------- 153 (254)
T ss_dssp TSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCC-------------
T ss_pred hhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCC-------------
Confidence 3345678899999999999999998875568999999999999999988765 33788999987754
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc------
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF------ 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~------ 280 (329)
+..+.||+|++.. ++.+- ... ....+|+.+.++|||||++++++.....
T Consensus 154 -----~~~~~fD~v~~~~------~l~~~-------~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 208 (254)
T 1xtp_A 154 -----LPPNTYDLIVIQW------TAIYL-------TDA-------DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -----CCSSCEEEEEEES------CGGGS-------CHH-------HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -----CCCCCeEEEEEcc------hhhhC-------CHH-------HHHHHHHHHHHhcCCCeEEEEEecCCCcccceec
Confidence 2457899999632 22111 111 2456899999999999999998742211
Q ss_pred ------cccHHHHHHHHhhCCCcEEe
Q psy15212 281 ------EESEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 281 ------~Ene~vv~~~l~~~~~~~~~ 300 (329)
.-..+.+..++++. +|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~l~~a-Gf~~~ 233 (254)
T 1xtp_A 209 KEDSSLTRSDIHYKRLFNES-GVRVV 233 (254)
T ss_dssp TTTTEEEBCHHHHHHHHHHH-TCCEE
T ss_pred ccCCcccCCHHHHHHHHHHC-CCEEE
Confidence 12345666677665 55544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-12 Score=117.07 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=87.1
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
...++.+|||+|||+|..+..+++....+|+|+|++ .+++.++++++.+|+. ++++.+|+.+..
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------------- 100 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH------------- 100 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-------------
T ss_pred hhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc-------------
Confidence 345788999999999999999998633699999999 6999999999999985 899999998765
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.+.++||+|+++++..... .... ...+|..+.++|||||+++.+++++
T Consensus 101 -----~~~~~~D~Ivs~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~li~~~~~~ 148 (328)
T 1g6q_1 101 -----LPFPKVDIIISEWMGYFLL------------YESM-------MDTVLYARDHYLVEGGLIFPDKCSI 148 (328)
T ss_dssp -----CSSSCEEEEEECCCBTTBS------------TTCC-------HHHHHHHHHHHEEEEEEEESCEEEE
T ss_pred -----CCCCcccEEEEeCchhhcc------------cHHH-------HHHHHHHHHhhcCCCeEEEEeeceE
Confidence 2347899999987643210 0011 2356788889999999998665553
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=109.99 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=86.0
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC---------------------------------------CEEEEEeCChh
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD---------------------------------------IKLISVDNNLS 166 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~---------------------------------------~~v~avD~~~~ 166 (329)
.+....++..|||+|||+|++++.+|.... .+|+|+|+|+.
T Consensus 195 ~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ 274 (393)
T 3k0b_A 195 LLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDAR 274 (393)
T ss_dssp HHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHH
Confidence 445677889999999999999998886532 35999999999
Q ss_pred HHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCCh
Q psy15212 167 RLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRK 244 (329)
Q Consensus 167 rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~ 244 (329)
+++.+++|++..|+. +++.++|+.+.. ....||+|++|||+.- ..
T Consensus 275 al~~Ar~Na~~~gl~~~I~~~~~D~~~~~-------------------~~~~fD~Iv~NPPYg~--------------rl 321 (393)
T 3k0b_A 275 LIEIAKQNAVEAGLGDLITFRQLQVADFQ-------------------TEDEYGVVVANPPYGE--------------RL 321 (393)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEECCGGGCC-------------------CCCCSCEEEECCCCCC--------------SH
T ss_pred HHHHHHHHHHHcCCCCceEEEECChHhCC-------------------CCCCCCEEEECCCCcc--------------cc
Confidence 999999999999985 899999998865 2358999999999741 11
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 245 NDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 245 ~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+...+..+...+-+ .++. -+||.++..|.
T Consensus 322 ~~~~~l~~ly~~lg~-~lk~-~~g~~~~iit~ 351 (393)
T 3k0b_A 322 EDEEAVRQLYREMGI-VYKR-MPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHHHHHHHHH-HHHT-CTTCEEEEEEC
T ss_pred CCchhHHHHHHHHHH-HHhc-CCCCEEEEEEC
Confidence 222334444444333 3333 36888877654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.20 E-value=6.7e-11 Score=105.99 Aligned_cols=104 Identities=19% Similarity=0.226 Sum_probs=82.1
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++ ..+. .++++.+|+...+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~-------------- 99 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIP-------------- 99 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCC--------------
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCC--------------
Confidence 4677899999999999999999976 569999999999999999998 3333 3899999987754
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.++.||+|++... +...++ ...+|+.+.++|||||+++.+
T Consensus 100 ----~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 100 ----LPDESVHGVIVVHL------WHLVPD----------------WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp ----SCTTCEEEEEEESC------GGGCTT----------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ----CCCCCeeEEEECCc------hhhcCC----------------HHHHHHHHHHHCCCCcEEEEE
Confidence 34578999997432 211111 246789999999999999877
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=105.75 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=80.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..++.+|||+|||+|..+..+++... +|+|+|+|+.+++.++++... .++++.+|+....
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~~---------------- 99 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQ---------------- 99 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCC----------------
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHcC----------------
Confidence 35678999999999999999997654 899999999999999988654 5788889987653
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH-hcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW-KMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~-~~LkpgG~lvysTC 276 (329)
.++.||+|++. +++.+-++ ...+|+++. ++|||||+++.++.
T Consensus 100 ---~~~~fD~v~~~------~~l~~~~~----------------~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 100 ---LPRRYDNIVLT------HVLEHIDD----------------PVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp ---CSSCEEEEEEE------SCGGGCSS----------------HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---cCCcccEEEEh------hHHHhhcC----------------HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 35789999963 23332222 246899999 99999999999874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=99.88 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++ ..+.+...|+..+...
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~------------- 109 (227)
T 3e8s_A 49 LGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEA------------- 109 (227)
T ss_dssp HHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTT-------------
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhccc-------------
Confidence 3456789999999999999999986 56999999999999999887 2356777777665200
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
......+||+|++..... +++ ...+|+.+.++|||||++++++-
T Consensus 110 -~~~~~~~fD~v~~~~~l~-------~~~----------------~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 110 -KVPVGKDYDLICANFALL-------HQD----------------IIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp -CSCCCCCEEEEEEESCCC-------SSC----------------CHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -ccccCCCccEEEECchhh-------hhh----------------HHHHHHHHHHHhCCCeEEEEEec
Confidence 112345699999754321 111 23579999999999999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=104.74 Aligned_cols=159 Identities=18% Similarity=0.083 Sum_probs=103.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-----------------------------
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL----------------------------- 180 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~----------------------------- 180 (329)
..+|.+|||+|||+|..+..++.....+|+++|+|+.+++.+++++...+.
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 356789999999999999888865335999999999999999998876541
Q ss_pred -ce-EEEecCccccchhhhhhhhcccccccccccCC---CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHH
Q psy15212 181 -KA-TLILSDISKINLKKLYIDINKKTNNRFRFYKN---KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSC 255 (329)
Q Consensus 181 -~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 255 (329)
.+ +++.+|+.... . ... +.||+|++.- ++.. +........
T Consensus 134 ~~v~~~~~~d~~~~~----------------~-~~~~~~~~fD~v~~~~------~l~~------------~~~~~~~~~ 178 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQ----------------P-LGGVSLPPADCLLSTL------CLDA------------ACPDLPAYR 178 (265)
T ss_dssp HHEEEEEECCTTSSS----------------T-TTTCCCCCEEEEEEES------CHHH------------HCSSHHHHH
T ss_pred hhheeEEEeeeccCC----------------C-CCccccCCccEEEEhh------hhhh------------hcCChHHHH
Confidence 15 78888987753 1 122 6899999632 1110 000112346
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCC------------CccccHHHHHHHHhhCCCcEEecCC---CcccCCCCCCCCCCeEE
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSL------------WFEESEEQAIIFSKNHKDSIRLNSP---GQLLPTVNKKQDYDGFF 320 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~------------~~~Ene~vv~~~l~~~~~~~~~~~~---~~~~p~~~~~~~~~gff 320 (329)
.+|+++.++|||||+|++++..- ...-+++.+...+++. +|+.+... ...-+.. ...+++|
T Consensus 179 ~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~~~~~~~~~~~---~~~~~~~ 254 (265)
T 2i62_A 179 TALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEA-GYTIEQFEVISQNYSSTT---SNNEGLF 254 (265)
T ss_dssp HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TCEEEEEEEECCCCCTTT---BCCCCEE
T ss_pred HHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHC-CCEEEEEEEecccCCccc---cccceEE
Confidence 78999999999999999876321 1112455667777765 66655431 1111111 2445666
Q ss_pred EEEEEec
Q psy15212 321 YSLFQKR 327 (329)
Q Consensus 321 ~a~l~k~ 327 (329)
+..-+|.
T Consensus 255 ~~~a~K~ 261 (265)
T 2i62_A 255 SLVGRKP 261 (265)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 6666664
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-10 Score=111.73 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=83.3
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHH-------HHHHHHcC--Cc-eEEEecCccccch
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMI-------SENLKRLN--LK-ATLILSDISKINL 194 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l-------~~n~~~~g--~~-v~~~~~D~~~~~~ 194 (329)
..+.+.+|++|||+|||+|..+..+|+..+ .+|+|+|+++.+++.+ +++++..| +. ++++.+|......
T Consensus 236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 315 (433)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence 445778999999999999999999999766 6899999999999888 99999988 43 7888876542110
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+ . ...+.||+|+++..+. . .+ ....|+.+.+.|||||+||.+
T Consensus 316 -~~------------~-~~~~~FDvIvvn~~l~---------------~-~d-------~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 316 -RV------------A-ELIPQCDVILVNNFLF---------------D-ED-------LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp -HH------------H-HHGGGCSEEEECCTTC---------------C-HH-------HHHHHHHHHTTCCTTCEEEES
T ss_pred -cc------------c-cccCCCCEEEEeCccc---------------c-cc-------HHHHHHHHHHhCCCCeEEEEe
Confidence 00 0 0125799999864321 0 11 224578889999999999876
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=111.08 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=86.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC---ceEEEecCccccchhhhhhhhcc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL---KATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~---~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...+.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++.+. |+ .++++.+|+....
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l---------- 187 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL---------- 187 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH----------
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHH----------
Confidence 34567999999999999999998755 69999999999999999998764 33 3899999987642
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.....++||+|++|++... +. ... ....++++.+.++|+|||.|+..+.+.
T Consensus 188 ------~~~~~~~fDlIi~d~~~p~-~~------------~~~-----l~~~~~l~~~~~~LkpgG~lv~~~~~~ 238 (334)
T 1xj5_A 188 ------KNAAEGSYDAVIVDSSDPI-GP------------AKE-----LFEKPFFQSVARALRPGGVVCTQAESL 238 (334)
T ss_dssp ------HTSCTTCEEEEEECCCCTT-SG------------GGG-----GGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred ------HhccCCCccEEEECCCCcc-Cc------------chh-----hhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 1112468999999986210 00 000 013568999999999999999975553
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-11 Score=117.16 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=85.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
...++.+|||+|||+|..+..+++....+|+|+|+++ +++.++++++.+|+. ++++.+|+.+..
T Consensus 155 ~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~------------- 220 (480)
T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS------------- 220 (480)
T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-------------
T ss_pred hhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-------------
Confidence 4457889999999999999999885336999999998 999999999999984 899999998754
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..++||+|+++++-... ..+ ...+.+..+.++|||||+++.+.+++
T Consensus 221 ------~~~~fD~Ivs~~~~~~~-------------~~e-------~~~~~l~~~~~~LkpgG~li~~~~~~ 266 (480)
T 3b3j_A 221 ------LPEQVDIIISEPMGYML-------------FNE-------RMLESYLHAKKYLKPSGNMFPTIGDV 266 (480)
T ss_dssp ------CSSCEEEEECCCCHHHH-------------TCH-------HHHHHHHHGGGGEEEEEEEESCEEEE
T ss_pred ------cCCCeEEEEEeCchHhc-------------CcH-------HHHHHHHHHHHhcCCCCEEEEEecee
Confidence 13589999988761100 001 12345668889999999999665543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-11 Score=112.77 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=74.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHH---HHcCCceEEE--ecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENL---KRLNLKATLI--LSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~---~~~g~~v~~~--~~D~~~~~~~~~~~~~~~~ 204 (329)
+++|.+|||+|||||+.+..++++ ++|+|+|+++ ++..++++. +..+..+.++ .+|+..++
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----------- 145 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME----------- 145 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-----------
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-----------
Confidence 568999999999999999999987 5999999998 432222110 1112246778 88887643
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC--EEEEEcCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG--KLLFVTCS 277 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG--~lvysTCS 277 (329)
++.||.|++|.. ..+|. ....... +..+|+.+.++||||| .++..+.+
T Consensus 146 ---------~~~fD~Vvsd~~-~~~~~-------------~~~d~~~--~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 ---------PFQADTVLCDIG-ESNPT-------------AAVEASR--TLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ---------CCCCSEEEECCC-CCCSC-------------HHHHHHH--HHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ---------CCCcCEEEECCC-cCCCc-------------hhhhHHH--HHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 468999999976 32221 0111111 1237888999999999 99876543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.6e-11 Score=110.30 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=85.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--C----CceEEEecCccccchhhhhhhhcc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--N----LKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g----~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..+.+|||+|||+|+.+..+++..+ .+|+++|+++.+++.+++++... + -.++++.+|+....
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l---------- 145 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL---------- 145 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH----------
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHH----------
Confidence 3457999999999999999998754 69999999999999999998752 2 23899999988742
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ...++||+|++|++... + . ..|. ..+ ...++++.+.+.|+|||.++..+.+
T Consensus 146 ------~-~~~~~fD~Ii~d~~~~~-~-~-~~~~-------~~l-----~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 146 ------E-RTEERYDVVIIDLTDPV-G-E-DNPA-------RLL-----YTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp ------H-HCCCCEEEEEEECCCCB-S-T-TCGG-------GGG-----SSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ------H-hcCCCccEEEECCCCcc-c-c-cCcc-------hhc-----cHHHHHHHHHHhcCCCcEEEEEccC
Confidence 1 12468999999987531 0 0 0000 000 0246789999999999999987644
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=106.48 Aligned_cols=108 Identities=16% Similarity=0.283 Sum_probs=83.7
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
+...+.+.++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.++++. -.++++.+|+..++
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~---------- 113 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFR---------- 113 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCC----------
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCC----------
Confidence 34455677899999999999999999998 4479999999999999998875 23678889988765
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ++.||+|++... +..-++ ...+|+++.+.|||||++++++..
T Consensus 114 --------~-~~~fD~v~~~~~------l~~~~d----------------~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 114 --------V-DKPLDAVFSNAM------LHWVKE----------------PEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp --------C-SSCEEEEEEESC------GGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred --------c-CCCcCEEEEcch------hhhCcC----------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 2 468999996432 111111 235789999999999999987654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-11 Score=112.37 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=82.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHH---HHHcCCceEEE--ecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISEN---LKRLNLKATLI--LSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n---~~~~g~~v~~~--~~D~~~~~~~~~~~~~~~~ 204 (329)
+++|.+|||+|||||+.+..+++. ++|+|+|+++ ++..++++ .+.++..+.++ .+|+..++
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~----------- 137 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP----------- 137 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-----------
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-----------
Confidence 578999999999999999999987 5999999998 43222111 01122246777 88887653
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC--EEEEEcCCCCccc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG--KLLFVTCSLWFEE 282 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG--~lvysTCS~~~~E 282 (329)
++.||+|++|.. ..+|. ....... +..+|+.+.++||||| .++..+-. .+
T Consensus 138 ---------~~~fD~V~sd~~-~~~~~-------------~~~d~~~--~l~~L~~~~r~LkpGG~~~fv~kv~~---~~ 189 (265)
T 2oxt_A 138 ---------VERTDVIMCDVG-ESSPK-------------WSVESER--TIKILELLEKWKVKNPSADFVVKVLC---PY 189 (265)
T ss_dssp ---------CCCCSEEEECCC-CCCSC-------------HHHHHHH--HHHHHHHHHHHHHHCTTCEEEEEESC---TT
T ss_pred ---------CCCCcEEEEeCc-ccCCc-------------cchhHHH--HHHHHHHHHHHhccCCCeEEEEEeCC---CC
Confidence 468999999976 32221 0111111 1227888999999999 99876533 33
Q ss_pred cH---HHHHHHHhhCCCcEE
Q psy15212 283 SE---EQAIIFSKNHKDSIR 299 (329)
Q Consensus 283 ne---~vv~~~l~~~~~~~~ 299 (329)
.. +.+..+...+..+..
T Consensus 190 ~~~~~~~l~~l~~~f~~v~~ 209 (265)
T 2oxt_A 190 SVEVMERLSVMQRKWGGGLV 209 (265)
T ss_dssp SHHHHHHHHHHHHHHCCEEE
T ss_pred ChhHHHHHHHHHHHcCCEEE
Confidence 44 444554444444433
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=103.06 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++ ++++.+|+....
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~---------------- 94 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK-------FNVVKSDAIEYL---------------- 94 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT-------SEEECSCHHHHH----------------
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh-------cceeeccHHHHh----------------
Confidence 567889999999999999999987 55899999999999988877 677888877642
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+.+++||+|++. +++.+-++ .+ ...+|+.+.++|||||++++++..
T Consensus 95 ~~~~~~~fD~i~~~------~~l~~~~~-------~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 95 KSLPDKYLDGVMIS------HFVEHLDP-------ER-------LFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp HTSCTTCBSEEEEE------SCGGGSCG-------GG-------HHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred hhcCCCCeeEEEEC------CchhhCCc-------HH-------HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 01345789999963 33322221 11 246899999999999999998754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=105.34 Aligned_cols=109 Identities=13% Similarity=0.246 Sum_probs=83.3
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..+...+.+.++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.++++. .++++.+|+..++
T Consensus 24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-------- 89 (261)
T 3ege_A 24 NAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAENLA-------- 89 (261)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTSCC--------
T ss_pred HHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhhCC--------
Confidence 3444555677889999999999999999997 3479999999999988766554 5789999998765
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||.|++... +.+-++ ...+|+++.+.|| ||++++.++.
T Consensus 90 ----------~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 90 ----------LPDKSVDGVISILA------IHHFSH----------------LEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp ----------SCTTCBSEEEEESC------GGGCSS----------------HHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred ----------CCCCCEeEEEEcch------HhhccC----------------HHHHHHHHHHHhC-CcEEEEEEcC
Confidence 34578999996432 111111 3468999999999 9988888765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=105.16 Aligned_cols=125 Identities=18% Similarity=0.138 Sum_probs=88.4
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-----eEEEecCccccchhhh
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-----ATLILSDISKINLKKL 197 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-----v~~~~~D~~~~~~~~~ 197 (329)
.+...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....+.. +.+..+|+..++.
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--- 123 (293)
T 3thr_A 48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK--- 123 (293)
T ss_dssp HHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH---
T ss_pred HHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc---
Confidence 3444455567889999999999999999986 459999999999999999988655432 5778888776430
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.++..++||+|++... ++.+-++.... .+ ....+|+++.++|||||+++.+++.
T Consensus 124 ------------~~~~~~~fD~V~~~g~-----~l~~~~~~~~~--~~-------~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 124 ------------DVPAGDGFDAVICLGN-----SFAHLPDSKGD--QS-------EHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ------------HSCCTTCEEEEEECTT-----CGGGSCCSSSS--SH-------HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ------------ccccCCCeEEEEEcCh-----HHhhcCccccC--HH-------HHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 1124578999996311 22222221111 11 2456899999999999999988653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-11 Score=112.20 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=84.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+|.+|||+|||+|..+..+|+....+|+|+|.|+ +++.++++++.+|+. ++++.+|+..+.
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--------------- 145 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--------------- 145 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC---------------
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec---------------
Confidence 36889999999999999888875446999999986 889999999999986 899999998875
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
.+++||+|+++.- +.+.+. +.. ...++....++|||||.++-+.++++
T Consensus 146 ----lpe~~DvivsE~~--~~~l~~----------e~~-------l~~~l~a~~r~Lkp~G~~iP~~atly 193 (376)
T 4hc4_A 146 ----LPEQVDAIVSEWM--GYGLLH----------ESM-------LSSVLHARTKWLKEGGLLLPASAELF 193 (376)
T ss_dssp ----CSSCEEEEECCCC--BTTBTT----------TCS-------HHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred ----CCccccEEEeecc--cccccc----------cch-------hhhHHHHHHhhCCCCceECCccceEE
Confidence 2478999997542 222211 111 23456666789999999998777654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.1e-11 Score=108.43 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=81.4
Q ss_pred cCCCCCCeEEeecC------CCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEE-EecCccccchhhhh
Q psy15212 128 LDIRSGMYVLDACS------APGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATL-ILSDISKINLKKLY 198 (329)
Q Consensus 128 l~~~~g~~VLDlca------g~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~-~~~D~~~~~~~~~~ 198 (329)
+.+++|++|||+|| |||+ ..++++.+ ++|+|+|+++. + . .+++ +++|+..+.
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~--~v~~~i~gD~~~~~----- 119 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S--DADSTLIGDCATVH----- 119 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C--SSSEEEESCGGGCC-----
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C--CCEEEEECccccCC-----
Confidence 46788999999999 7788 55566665 79999999998 1 1 3667 999988754
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..++||+|++|+++...|....+.. +.. ....++|+.+.++|||||++++.+-.
T Consensus 120 --------------~~~~fD~Vvsn~~~~~~g~~~~d~~-----~~~------~l~~~~l~~a~r~LkpGG~~v~~~~~- 173 (290)
T 2xyq_A 120 --------------TANKWDLIISDMYDPRTKHVTKEND-----SKE------GFFTYLCGFIKQKLALGGSIAVKITE- 173 (290)
T ss_dssp --------------CSSCEEEEEECCCCCC---CCSCCC-----CCC------THHHHHHHHHHHHEEEEEEEEEEECS-
T ss_pred --------------ccCcccEEEEcCCcccccccccccc-----chH------HHHHHHHHHHHHhcCCCcEEEEEEec-
Confidence 1367999999988766665432211 000 12347899999999999999986432
Q ss_pred CccccHHHHHHHHhhC
Q psy15212 279 WFEESEEQAIIFSKNH 294 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~ 294 (329)
....+ .+.+.++.+
T Consensus 174 -~~~~~-~l~~~l~~~ 187 (290)
T 2xyq_A 174 -HSWNA-DLYKLMGHF 187 (290)
T ss_dssp -SSCCH-HHHHHHTTE
T ss_pred -cCCHH-HHHHHHHHc
Confidence 22333 445566654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-10 Score=102.36 Aligned_cols=160 Identities=17% Similarity=0.101 Sum_probs=95.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc-----------------CC-------------
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL-----------------NL------------- 180 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~-----------------g~------------- 180 (329)
.++.+|||+|||+|..+..++...+.+|+|+|+|+.+++.+++++++. |.
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 367899999999999444344333469999999999999998866431 10
Q ss_pred -ceEEEecCccc-cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH---HHHHH
Q psy15212 181 -KATLILSDISK-INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL---SKYSC 255 (329)
Q Consensus 181 -~v~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l---~~~q~ 255 (329)
.++++.+|+.. .++. + ..+.+++||+|++.. + +..+ .....
T Consensus 150 ~~~~~~~~D~~~~~~~~----------~---~~~~~~~fD~V~~~~------~---------------l~~~~~~~~~~~ 195 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLG----------A---GSPAPLPADALVSAF------C---------------LEAVSPDLASFQ 195 (289)
T ss_dssp HEEEEECCCTTSSSTTC----------S---SCSSCSSEEEEEEES------C---------------HHHHCSSHHHHH
T ss_pred hhceEEecccCCCCCcc----------c---cccCCCCCCEEEehh------h---------------hhhhcCCHHHHH
Confidence 03566778776 2200 0 002345799999642 1 1111 22345
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCC------------CccccHHHHHHHHhhCCCcEEecCCCcc----cCCCCCCCCCCeE
Q psy15212 256 KILNNLWKMLKPGGKLLFVTCSL------------WFEESEEQAIIFSKNHKDSIRLNSPGQL----LPTVNKKQDYDGF 319 (329)
Q Consensus 256 ~lL~~a~~~LkpgG~lvysTCS~------------~~~Ene~vv~~~l~~~~~~~~~~~~~~~----~p~~~~~~~~~gf 319 (329)
.+|+++.++|||||+|+++...- ...-+.+.+...++.. +|+.+...... +... ....+++
T Consensus 196 ~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~~~~~~~~~~~~~~~~~--~~~~~~~ 272 (289)
T 2g72_A 196 RALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRS-GYKVRDLRTYIMPAHLQTG--VDDVKGV 272 (289)
T ss_dssp HHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEEEEEECCGGGCCT--TBCCCEE
T ss_pred HHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHc-CCeEEEeeEeecccccccc--ccCcceE
Confidence 78999999999999999864210 0112455667777765 66654321111 1111 1356666
Q ss_pred EEEEEEec
Q psy15212 320 FYSLFQKR 327 (329)
Q Consensus 320 f~a~l~k~ 327 (329)
|+..-+|.
T Consensus 273 ~~~~~~~~ 280 (289)
T 2g72_A 273 FFAWAQKV 280 (289)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecc
Confidence 66555554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.12 E-value=9e-10 Score=100.83 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=82.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeC-ChhHHHHHHHHH-----HHcCC------ceEEEecCccccchhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDN-NLSRLNMISENL-----KRLNL------KATLILSDISKINLKKL 197 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~-~~~rl~~l~~n~-----~~~g~------~v~~~~~D~~~~~~~~~ 197 (329)
..+|.+|||+|||+|..+..++.....+|+++|+ ++.+++.+++|+ +..++ .+++...|..+.. ..+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSP-DSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCT-HHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCcc-HHH
Confidence 3578899999999999999888753359999999 899999999999 55554 2566655543321 000
Q ss_pred hhhhcccccccccccCCCCCCEEEE-ccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC---C--CCEE
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILA-DLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK---P--GGKL 271 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~-D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk---p--gG~l 271 (329)
. .....+.||+|++ |+.+. ... ...+++.+.++|+ | ||++
T Consensus 156 ~-----------~~~~~~~fD~Ii~~dvl~~----------------~~~-------~~~ll~~l~~~Lk~~~p~~gG~l 201 (281)
T 3bzb_A 156 Q-----------RCTGLQRFQVVLLADLLSF----------------HQA-------HDALLRSVKMLLALPANDPTAVA 201 (281)
T ss_dssp H-----------HHHSCSSBSEEEEESCCSC----------------GGG-------HHHHHHHHHHHBCCTTTCTTCEE
T ss_pred H-----------hhccCCCCCEEEEeCcccC----------------hHH-------HHHHHHHHHHHhcccCCCCCCEE
Confidence 0 0002468999986 65432 111 3457888889999 9 9977
Q ss_pred EEEcCCCCc---cccHHHHHHHHhhCCC-cEEe
Q psy15212 272 LFVTCSLWF---EESEEQAIIFSKNHKD-SIRL 300 (329)
Q Consensus 272 vysTCS~~~---~Ene~vv~~~l~~~~~-~~~~ 300 (329)
+.+.+...+ +..+..++ .++++ + ++..
T Consensus 202 ~v~~~~~~~~~~~~~~~~~~-~l~~~-G~f~v~ 232 (281)
T 3bzb_A 202 LVTFTHHRPHLAERDLAFFR-LVNAD-GALIAE 232 (281)
T ss_dssp EEEECC--------CTHHHH-HHHHS-TTEEEE
T ss_pred EEEEEeeecccchhHHHHHH-HHHhc-CCEEEE
Confidence 665443222 22333443 44554 5 5544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=105.13 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=78.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++.. + .++.+|+..++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~--~---~~~~~d~~~~~------------------ 109 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV--K---NVVEAKAEDLP------------------ 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC--S---CEEECCTTSCC------------------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC--C---CEEECcHHHCC------------------
Confidence 7889999999999999999976 5699999999999999988764 1 27788887754
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||.|++.... .++......+|+++.++|||||+++.++.+
T Consensus 110 ~~~~~fD~v~~~~~~---------------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 110 FPSGAFEAVLALGDV---------------------LSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp SCTTCEEEEEECSSH---------------------HHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCCCEEEEEEcchh---------------------hhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 245789999964321 111111456899999999999999988765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=105.66 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=77.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.+.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.+++ .-.++++++|+.+++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~-----~~~v~~~~~~~e~~~------------------ 94 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR-----HPRVTYAVAPAEDTG------------------ 94 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC-----CTTEEEEECCTTCCC------------------
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh-----cCCceeehhhhhhhc------------------
Confidence 45699999999999999999764 599999999999986643 123889999998876
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+.++.||+|++- .++ .|. . ..++++++.++|||||+|++.+.+..
T Consensus 95 ~~~~sfD~v~~~------~~~------h~~-~----------~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 95 LPPASVDVAIAA------QAM------HWF-D----------LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp CCSSCEEEEEEC------SCC------TTC-C----------HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred ccCCcccEEEEe------eeh------hHh-h----------HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 456899999962 122 122 1 12468889999999999998876644
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=98.81 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=76.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
++.+|||+|||+|..+..+ +. +++++|+++.+++.++++. ..++++.+|+...+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~----------------- 90 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALP----------------- 90 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCC-----------------
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCC-----------------
Confidence 7889999999999988776 54 9999999999999998886 23778889987764
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||.|++... +.+.++ ..++|+++.++|||||++++++..
T Consensus 91 -~~~~~fD~v~~~~~------l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 91 -FPGESFDVVLLFTT------LEFVED----------------VERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp -SCSSCEEEEEEESC------TTTCSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCCCcEEEEEEcCh------hhhcCC----------------HHHHHHHHHHHcCCCCEEEEEecC
Confidence 24578999996532 221111 246899999999999999998743
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.5e-10 Score=109.50 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=114.4
Q ss_pred ccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--------------CEEEEEeCChhHHHHHHHHH
Q psy15212 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--------------IKLISVDNNLSRLNMISENL 175 (329)
Q Consensus 110 ~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--------------~~v~avD~~~~rl~~l~~n~ 175 (329)
+.|.||--..-+.+.+.++.+++|++|+|.|||+|++.+.+.+.+. ..++|+|+++.....++-|+
T Consensus 195 ~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 195 DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp SCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred cCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 3577777777788889999999999999999999999988876431 36999999999999999999
Q ss_pred HHcCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccc---cccCCCCcccCChhHHHHHH
Q psy15212 176 KRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGV---VRRNPDIPWLRRKNDIKKLS 251 (329)
Q Consensus 176 ~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~---~~~~p~~~~~~~~~~~~~l~ 251 (329)
--.|+. ..+..+|....+.. ......+||+||.|||+++..- ..+.+.. ...+
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~--------------~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~-~~~~-------- 331 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLR--------------EMGDKDRVDVILTNPPFGGEEEKGILGNFPED-MQTA-------- 331 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGG--------------GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGG-GCCC--------
T ss_pred HhcCCccccccccccccCchh--------------hhcccccceEEEecCCCCccccccccccCchh-cccc--------
Confidence 988987 67888887654310 1112357999999999975421 1111110 0011
Q ss_pred HHHHHHHHHHHhcCC-------CCCEEEEEcC--CCCccccHH-HHHHHHhhCCCc-EEecCCCcc
Q psy15212 252 KYSCKILNNLWKMLK-------PGGKLLFVTC--SLWFEESEE-QAIIFSKNHKDS-IRLNSPGQL 306 (329)
Q Consensus 252 ~~q~~lL~~a~~~Lk-------pgG~lvysTC--S~~~~Ene~-vv~~~l~~~~~~-~~~~~~~~~ 306 (329)
..+..++.++++.|| +||++.+.+- .+...-.+. +.+++++.+ .+ .++..|..+
T Consensus 332 ~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~-~l~aII~LP~~~ 396 (530)
T 3ufb_A 332 ETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNF-NLHTIVRLPEGV 396 (530)
T ss_dssp BHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHS-EEEEEEECCTTT
T ss_pred hhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcC-EEEEEEECCccc
Confidence 123345666666665 7999887753 232222233 445556654 33 234445443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=106.20 Aligned_cols=133 Identities=8% Similarity=0.037 Sum_probs=94.8
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.+|||+|||.|+.+..+++..+ .+|+++|+++.+++.+++++....- +++++.+|+..+. ..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----------------~~ 154 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----------------ES 154 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----------------HT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----------------hh
Confidence 3999999999999999998665 7999999999999999998865433 3899999998753 11
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc-cccHHHHHHH
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF-EESEEQAIIF 290 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~-~Ene~vv~~~ 290 (329)
..+++||+|++|++... +. |...+ ..++++.+.+.|+|||.|+..+.+-.+ .....+++.+
T Consensus 155 ~~~~~fDvIi~D~~~~~-~~----~~~L~-------------t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL 216 (317)
T 3gjy_A 155 FTPASRDVIIRDVFAGA-IT----PQNFT-------------TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGM 216 (317)
T ss_dssp CCTTCEEEEEECCSTTS-CC----CGGGS-------------BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEECCCCcc-cc----chhhh-------------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHH
Confidence 23468999999975431 11 11001 146789999999999999987754322 1123455555
Q ss_pred HhhCCCcEEe
Q psy15212 291 SKNHKDSIRL 300 (329)
Q Consensus 291 l~~~~~~~~~ 300 (329)
-+.++....+
T Consensus 217 ~~vF~~v~~~ 226 (317)
T 3gjy_A 217 MEVFEHVAVI 226 (317)
T ss_dssp HHHCSEEEEE
T ss_pred HHHCCceEEE
Confidence 5566655544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-10 Score=99.24 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=83.4
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+.++.+|||+|||+|..+..+++... +|+++|+|+.+++.+++++. ...++++.+|+..+....
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~------------ 117 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAA------------ 117 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHH------------
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc--ccCceEEECccccccccc------------
Confidence 357888999999999999999998766 99999999999999998872 224889999998864110
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.+.....||+|++..... . ...++ ...+|+++.+.|||||+++.++..
T Consensus 118 -~~~~~~~~d~v~~~~~~~------~-------~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 118 -QIHSEIGDANIYMRTGFH------H-------IPVEK-------RELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp -HHHHHHCSCEEEEESSST------T-------SCGGG-------HHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred -ccccccCccEEEEcchhh------c-------CCHHH-------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 000113599999764322 1 11112 346899999999999998887654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.1e-11 Score=112.85 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=68.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc--CCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL--NLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~--g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+|.+|||+|||+|..++.+++. +.+|+++|+|+.+++.+++|++.+ |+. ++++++|+..+.
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L-------------- 156 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYL-------------- 156 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSH--------------
T ss_pred CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhh--------------
Confidence 35899999999999999999875 469999999999999999999998 885 899999998742
Q ss_pred cccccCCCCCCEEEEccCCccc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.....+.||.|++|||..+.
T Consensus 157 --~~~~~~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 157 --PLIKTFHPDYIYVDPARRSG 176 (410)
T ss_dssp --HHHHHHCCSEEEECCEEC--
T ss_pred --hhccCCCceEEEECCCCcCC
Confidence 00112579999999998763
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=114.26 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=87.9
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHc------CCc-eEEEecCccccchh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRL------NLK-ATLILSDISKINLK 195 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~------g~~-v~~~~~D~~~~~~~ 195 (329)
...+...++.+|||+|||+|..+..+++..+ .+|+|+|+++.+++.++++++.. ++. ++++.+|+..++
T Consensus 714 LelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp-- 791 (950)
T 3htx_A 714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD-- 791 (950)
T ss_dssp HHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC--
T ss_pred HHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC--
Confidence 4444556889999999999999999998774 69999999999999999987643 554 899999998876
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...+.||+|++. +++.+-++ .....+++.+.++|||| .++++|
T Consensus 792 ----------------~~d~sFDlVV~~------eVLeHL~d--------------p~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 792 ----------------SRLHDVDIGTCL------EVIEHMEE--------------DQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp ----------------TTSCSCCEEEEE------SCGGGSCH--------------HHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred ----------------cccCCeeEEEEe------CchhhCCh--------------HHHHHHHHHHHHHcCCC-EEEEEe
Confidence 245789999973 33322211 11335789999999999 888887
Q ss_pred CC
Q psy15212 276 CS 277 (329)
Q Consensus 276 CS 277 (329)
..
T Consensus 835 PN 836 (950)
T 3htx_A 835 PN 836 (950)
T ss_dssp CB
T ss_pred cC
Confidence 53
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-12 Score=112.62 Aligned_cols=127 Identities=23% Similarity=0.272 Sum_probs=91.6
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+......+...+++.++++|||+|||+|..+..+++.. .+|+|+|+|+.+++.+++++. ..-.++++++|+.+.+
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~ 88 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQ 88 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTT
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcC
Confidence 44455556666677788889999999999999999999875 699999999999999888876 2223889999998765
Q ss_pred hhhhhhhhcccccccccccC-CCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHH---HHHHHH----HHHHhcC
Q psy15212 194 LKKLYIDINKKTNNRFRFYK-NKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK---YSCKIL----NNLWKML 265 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~---~q~~lL----~~a~~~L 265 (329)
+. ++.| .|++|||+..+..+ +..+.. .....+ +.+.++|
T Consensus 89 ------------------~~~~~~f-~vv~n~Py~~~~~~--------------~~~~~~~~~~~~~~lm~q~e~a~rll 135 (245)
T 1yub_A 89 ------------------FPNKQRY-KIVGNIPYHLSTQI--------------IKKVVFESRASDIYLIVEEGFYKRTL 135 (245)
T ss_dssp ------------------CCCSSEE-EEEEECCSSSCHHH--------------HHHHHHHCCCEEEEEEEESSHHHHHH
T ss_pred ------------------cccCCCc-EEEEeCCccccHHH--------------HHHHHhCCCCCeEEEEeeHHHHHHHh
Confidence 12 2578 89999998744211 111110 011233 6688899
Q ss_pred CCCCEEEEEc
Q psy15212 266 KPGGKLLFVT 275 (329)
Q Consensus 266 kpgG~lvysT 275 (329)
+|||+++..+
T Consensus 136 ~~~G~l~v~~ 145 (245)
T 1yub_A 136 DIHRTLGLLL 145 (245)
T ss_dssp CGGGSHHHHT
T ss_pred CCCCchhhhh
Confidence 9999877644
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-10 Score=97.05 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=81.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++... +|+++|+|+.+++.++++.. .++++.+|+...+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~----~~~~~~~d~~~~~----------------- 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP----DATLHQGDMRDFR----------------- 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCC-----------------
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC----CCEEEECCHHHcc-----------------
Confidence 5678999999999999999998755 99999999999999988752 3788899988764
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
. .+.||+|++- .+++...+ +.+ ...++|+.+.++|+|||+++.+++..
T Consensus 97 -~-~~~~D~v~~~-----~~~~~~~~------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 97 -L-GRKFSAVVSM-----FSSVGYLK------TTE-------ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp -C-SSCEEEEEEC-----TTGGGGCC------SHH-------HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred -c-CCCCcEEEEc-----CchHhhcC------CHH-------HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 2 4689999941 11221111 111 24568999999999999999987653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-09 Score=102.32 Aligned_cols=110 Identities=20% Similarity=0.170 Sum_probs=86.3
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~ 202 (329)
..++..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++++...++. ++++.+|+.+..
T Consensus 176 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 245 (374)
T 1qzz_A 176 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------- 245 (374)
T ss_dssp HTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------
T ss_pred HhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------
Confidence 344567788999999999999999999876 79999999 99999999999998885 899999987521
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+ ..||+|++... +. .+... ...++|+++.+.|+|||++++...
T Consensus 246 ----------~-~~~D~v~~~~v------l~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 246 ----------P-VTADVVLLSFV------LL-------NWSDE-------DALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ----------S-CCEEEEEEESC------GG-------GSCHH-------HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----------C-CCCCEEEEecc------cc-------CCCHH-------HHHHHHHHHHHhcCCCcEEEEEec
Confidence 2 24999997432 11 11111 124689999999999999988765
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.5e-10 Score=101.90 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=73.6
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYI 199 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~ 199 (329)
....++..+++.++++|||+|||+|..|..+++. +.+|+|+|+|+.+++.+++++... -+++++++|+.+++
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~-~~v~vi~gD~l~~~------ 109 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY-NNIEIIWGDALKVD------ 109 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC-SSEEEEESCTTTSC------
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC-CCeEEEECchhhCC------
Confidence 3445566678889999999999999999999987 459999999999999999998732 24899999998865
Q ss_pred hhcccccccccccCCCCCCEEEEccCCc
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+....||+|+.++|+.
T Consensus 110 ------------~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 110 ------------LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp ------------GGGSCCSEEEEECCGG
T ss_pred ------------cccCCccEEEEeCccc
Confidence 2335799999999975
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.5e-10 Score=97.57 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=77.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++. +.+++++|+++.+++.++++. .+++.+|+.... .
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~----------------~ 87 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMD----------------M 87 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCC----------------C
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcC----------------C
Confidence 67889999999999999999987 679999999999999887654 267788887632 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+.++.||.|++.. ++.+.++ ...+|+.+.++|+|||+++.++-
T Consensus 88 ~~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 88 PYEEEQFDCVIFGD------VLEHLFD----------------PWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp CSCTTCEEEEEEES------CGGGSSC----------------HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred CCCCCccCEEEECC------hhhhcCC----------------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 12457899999742 2222211 13689999999999999999863
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-09 Score=97.50 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=85.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+.+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++++...++. ++++.+|+.....
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------- 243 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDV------------- 243 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSC-------------
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCC-------------
Confidence 4567999999999999999999876 79999999 99999999999988874 8999999876410
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
.+ ++.||+|++-- ++. .+..++ ..++|+++.+.|||||+|+.....+.
T Consensus 244 ---~~-p~~~D~v~~~~------vlh-------~~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 244 ---PF-PTGFDAVWMSQ------FLD-------CFSEEE-------VISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp ---CC-CCCCSEEEEES------CST-------TSCHHH-------HHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred ---CC-CCCcCEEEEec------hhh-------hCCHHH-------HHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 01 26799998522 111 122222 34689999999999999988765443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=101.46 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=82.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC-------C-ceEEEecCccccchhhhhhhhc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN-------L-KATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g-------~-~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.++.+|||+|||+|..+..+++....+++++|+++.+++.++++....+ . .++++.+|+.......
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~------ 106 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLID------ 106 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTT------
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhh------
Confidence 3678999999999999999997544799999999999999999987652 2 3789999988753000
Q ss_pred cccccccccc-CCCCCCEEEEccCCccccccccCCCCccc-CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 203 KKTNNRFRFY-KNKYFDRILADLPCTGSGVVRRNPDIPWL-RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 203 ~~~~~~~~~~-~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~-~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.+. ..+.||+|++.-. + .|. .+.. ....+|+.+.+.|||||.++.+|..
T Consensus 107 -------~~~~~~~~fD~V~~~~~------l------~~~~~~~~-------~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 107 -------KFRDPQMCFDICSCQFV------C------HYSFESYE-------QADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp -------TCSSTTCCEEEEEEETC------G------GGGGGSHH-------HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -------hcccCCCCEEEEEEecc------h------hhccCCHH-------HHHHHHHHHHHHhCCCcEEEEecCC
Confidence 000 2348999996421 1 121 1111 2346899999999999999988653
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.4e-10 Score=112.64 Aligned_cols=175 Identities=10% Similarity=0.054 Sum_probs=105.8
Q ss_pred cceEEEechhHHHHhhh----cC--CCCCCeEEeecCCCchHHHHHHHhCC----CEEEEEeCChhHHHHH--HHHHHH-
Q psy15212 111 NGFCSIQDAAAQLAAPL----LD--IRSGMYVLDACSAPGGKTCHLLEIAD----IKLISVDNNLSRLNMI--SENLKR- 177 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~----l~--~~~g~~VLDlcag~G~kt~~la~~~~----~~v~avD~~~~rl~~l--~~n~~~- 177 (329)
.|.++--..-+.+++.+ +. ..++.+|||+|||+|++.+.+++..+ ..++|+|+++..++.+ +.|+..
T Consensus 294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN 373 (878)
T 3s1s_A 294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP 373 (878)
T ss_dssp CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence 35555544545555544 32 24688999999999999999998764 4799999999999999 666554
Q ss_pred ---cCCc-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH---
Q psy15212 178 ---LNLK-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL--- 250 (329)
Q Consensus 178 ---~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l--- 250 (329)
.|+. ..+...|..... .....+||+|++|||+++....... ..+....+
T Consensus 374 ~LlhGi~~~~I~~dD~L~~~-----------------~~~~~kFDVVIgNPPYg~~~~~~~e-------~kd~~~r~~~g 429 (878)
T 3s1s_A 374 QLVSSNNAPTITGEDVCSLN-----------------PEDFANVSVVVMNPPYVSGVTDPAI-------KRKFAHKIIQL 429 (878)
T ss_dssp TTCBTTBCCEEECCCGGGCC-----------------GGGGTTEEEEEECCBCCSSCCCHHH-------HHHHHHHHHHH
T ss_pred hhhcCCCcceEEecchhccc-----------------ccccCCCCEEEECCCccccccchhh-------hhhHHHHhhhh
Confidence 2333 355555555422 0123689999999999743221100 00000001
Q ss_pred -----------HHHHHHHHHHHHhcCCCCCEEEEEcCC-CCc--cccHHHHHHHHhhCCCc-EEecCCC-cccCC
Q psy15212 251 -----------SKYSCKILNNLWKMLKPGGKLLFVTCS-LWF--EESEEQAIIFSKNHKDS-IRLNSPG-QLLPT 309 (329)
Q Consensus 251 -----------~~~q~~lL~~a~~~LkpgG~lvysTCS-~~~--~Ene~vv~~~l~~~~~~-~~~~~~~-~~~p~ 309 (329)
......++.++.++|++||++++.+-. +.. ......+.+++-++... .++..+. .++++
T Consensus 430 ~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~~I~aIIdLP~~~~F~~ 504 (878)
T 3s1s_A 430 TGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGNFGLEHIFLYPREGLFEE 504 (878)
T ss_dssp HSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTTTCEEEEEECCBCCSSCS
T ss_pred ccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhCCCeEEEEECCCccccCC
Confidence 123566899999999999999987643 322 11234444444433233 3344443 45543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.5e-10 Score=99.93 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=77.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.++++. ..+.++.+|+..++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~---------------- 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLP---------------- 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCS----------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCC----------------
Confidence 5788999999999999999999864 79999999999999988764 23678888987654
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.++.||.|++... + ..++.+.++|||||+++.++-.
T Consensus 144 --~~~~~fD~v~~~~~----------~-------------------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 144 --FSDTSMDAIIRIYA----------P-------------------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp --BCTTCEEEEEEESC----------C-------------------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred --CCCCceeEEEEeCC----------h-------------------hhHHHHHHhcCCCcEEEEEEcC
Confidence 24568999996321 0 1367888999999999988643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=110.37 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=85.6
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhC-------------------------------------------CCEEEEEeC
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIA-------------------------------------------DIKLISVDN 163 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~-------------------------------------------~~~v~avD~ 163 (329)
+....++..|||+|||+|++++.+|... ...|+|+|+
T Consensus 185 ~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Di 264 (703)
T 3v97_A 185 RSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDS 264 (703)
T ss_dssp HTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred hhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEEC
Confidence 4456788999999999999999888652 147999999
Q ss_pred ChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCccc
Q psy15212 164 NLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL 241 (329)
Q Consensus 164 ~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~ 241 (329)
++.+++.++.|+++.|+. +++.++|+..+. .....+.||+|++|||+.. . ..
T Consensus 265 d~~av~~A~~N~~~agv~~~i~~~~~D~~~~~----------------~~~~~~~~d~Iv~NPPYG~-R---------lg 318 (703)
T 3v97_A 265 DARVIQRARTNARLAGIGELITFEVKDVAQLT----------------NPLPKGPYGTVLSNPPYGE-R---------LD 318 (703)
T ss_dssp CHHHHHHHHHHHHHTTCGGGEEEEECCGGGCC----------------CSCTTCCCCEEEECCCCCC-------------
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEECChhhCc----------------cccccCCCCEEEeCCCccc-c---------cc
Confidence 999999999999999996 899999998764 1111237999999999841 0 00
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 242 RRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 242 ~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+...+.. +.. .+...++.+.|||+++.-|
T Consensus 319 -~~~~l~~---ly~-~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 319 -SEPALIA---LHS-LLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp -CCHHHHH---HHH-HHHHHHHHHCTTCEEEEEE
T ss_pred -chhHHHH---HHH-HHHHHHHhhCCCCeEEEEe
Confidence 1122222 222 2445555567899888764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-09 Score=98.82 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.++.+|||+|||+|..+..+++..+ .+++++|++ .+++.+++++.+.++. ++++.+|+.+.+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------------- 228 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-------------- 228 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC--------------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC--------------
Confidence 6788999999999999999999876 699999999 9999999999999885 899999987644
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
. ...||+|++.-. +. .+... ...++|+++.+.|+|||+++.......
T Consensus 229 ----~-~~~~D~v~~~~~------l~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 229 ----Y-GNDYDLVLLPNF------LH-------HFDVA-------TCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp ----C-CSCEEEEEEESC------GG-------GSCHH-------HHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred ----C-CCCCcEEEEcch------hc-------cCCHH-------HHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 1 234999997221 11 11111 135689999999999999888765443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=93.88 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...+....++.+|||+|||+|..+..++ .+|+++|+++. .++++.+|+...+
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~--------- 110 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVP--------- 110 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCS---------
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCC---------
Confidence 44444445678899999999999887764 58999999998 3567788887754
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
+.++.||+|++... +. +++ ...+|+.+.++|+|||++++++.... ..
T Consensus 111 ---------~~~~~fD~v~~~~~------l~-~~~----------------~~~~l~~~~~~L~~gG~l~i~~~~~~-~~ 157 (215)
T 2zfu_A 111 ---------LEDESVDVAVFCLS------LM-GTN----------------IRDFLEEANRVLKPGGLLKVAEVSSR-FE 157 (215)
T ss_dssp ---------CCTTCEEEEEEESC------CC-SSC----------------HHHHHHHHHHHEEEEEEEEEEECGGG-CS
T ss_pred ---------CCCCCEeEEEEehh------cc-ccC----------------HHHHHHHHHHhCCCCeEEEEEEcCCC-CC
Confidence 24578999996432 21 111 24678899999999999999875422 23
Q ss_pred cHHHHHHHHhhCCCcEEec
Q psy15212 283 SEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~~~~ 301 (329)
+.+.+...++.. +++.+.
T Consensus 158 ~~~~~~~~l~~~-Gf~~~~ 175 (215)
T 2zfu_A 158 DVRTFLRAVTKL-GFKIVS 175 (215)
T ss_dssp CHHHHHHHHHHT-TEEEEE
T ss_pred CHHHHHHHHHHC-CCEEEE
Confidence 556677777776 676554
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=104.61 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=71.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCCh-------hHHHHHHHHHHHcCC-c-eEEEecCccc
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNL-------SRLNMISENLKRLNL-K-ATLILSDISK 191 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~-------~rl~~l~~n~~~~g~-~-v~~~~~D~~~ 191 (329)
..+...++.+.+|++|||+|||+|..++.+|.. +++|+++|+++ .+++.+++|++.+++ . ++++++|+..
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~ 150 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE 150 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH
Confidence 444555556677899999999999999999986 56999999999 999999999988877 3 8999999877
Q ss_pred cchhhhhhhhcccccccccccCC--CCCCEEEEccCCcc
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKN--KYFDRILADLPCTG 228 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~--~~fD~Vl~D~PCsg 228 (329)
+. ..+.+ +.||+|++|||...
T Consensus 151 ~l----------------~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 151 QM----------------PALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HH----------------HHHHHHHCCCSEEEECCCC--
T ss_pred HH----------------HhhhccCCCccEEEECCCCCC
Confidence 42 10122 57999999999753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=96.39 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=72.0
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKK 196 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~ 196 (329)
+......+...+++.++++|||+|||+|..|..+++.. .+|+|+|+|+.+++.+++++... -.++++.+|+.+.+
T Consensus 15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~-~~v~~~~~D~~~~~--- 89 (244)
T 1qam_A 15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDILQFK--- 89 (244)
T ss_dssp CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGGGCC---
T ss_pred CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC-CCeEEEEChHHhCC---
Confidence 34444555666778889999999999999999999876 59999999999999999998643 24899999998865
Q ss_pred hhhhhcccccccccccC-CCCCCEEEEccCCc
Q psy15212 197 LYIDINKKTNNRFRFYK-NKYFDRILADLPCT 227 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~-~~~fD~Vl~D~PCs 227 (329)
+. ...| .|+.|+|+.
T Consensus 90 ---------------~~~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 90 ---------------FPKNQSY-KIFGNIPYN 105 (244)
T ss_dssp ---------------CCSSCCC-EEEEECCGG
T ss_pred ---------------cccCCCe-EEEEeCCcc
Confidence 12 2345 799999976
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=96.06 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=87.6
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYID 200 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~ 200 (329)
+...++..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++++++.++. ++++.+|+...+
T Consensus 182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 253 (359)
T 1x19_A 182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES------- 253 (359)
T ss_dssp HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-------
T ss_pred HHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-------
Confidence 33445567788999999999999999999876 79999999 99999999999998874 899999988654
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ..+|+|++.-. +. .+.. ....++|+++.+.|+|||++++....
T Consensus 254 -----------~--~~~D~v~~~~v------lh-------~~~d-------~~~~~~l~~~~~~L~pgG~l~i~e~~ 297 (359)
T 1x19_A 254 -----------Y--PEADAVLFCRI------LY-------SANE-------QLSTIMCKKAFDAMRSGGRLLILDMV 297 (359)
T ss_dssp -----------C--CCCSEEEEESC------GG-------GSCH-------HHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred -----------C--CCCCEEEEech------hc-------cCCH-------HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 1 23499996321 11 1111 12456899999999999999877644
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-09 Score=91.74 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..++.. +++|+++.+++.++++ .++++.+|+...+
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~------------------ 97 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLP------------------ 97 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCC------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCC------------------
Confidence 3789999999999999988753 9999999999998887 4678888887654
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+..+.||+|++.. ++...++ ...+|+.+.++|+|||.++.++..
T Consensus 98 ~~~~~fD~v~~~~------~l~~~~~----------------~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 98 LKDESFDFALMVT------TICFVDD----------------PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp SCTTCEEEEEEES------CGGGSSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCeeEEEEcc------hHhhccC----------------HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 2456899999753 2221111 246889999999999999998643
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-09 Score=97.17 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceE-EEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKAT-LILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~-~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
+|.+|||+|||+|+.|..+++...++|+|+|+++.+++...++ .-.+. +...|++.+.. .
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~----~~rv~~~~~~ni~~l~~---------------~ 145 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ----DDRVRSMEQYNFRYAEP---------------V 145 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT----CTTEEEECSCCGGGCCG---------------G
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CcccceecccCceecch---------------h
Confidence 5779999999999999999987436999999999999874322 11222 22234443320 0
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.++...||.|++|....+. ..+|.++.++|+|||+++..
T Consensus 146 ~l~~~~fD~v~~d~sf~sl-------------------------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL-------------------------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG-------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEeeHhhH-------------------------HHHHHHHHHHcCcCCEEEEE
Confidence 1123459999998754311 34789999999999999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8.9e-09 Score=96.07 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=84.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..++.+|||+|||+|..+..+++..+ .+++++|+ +..++.+++++...++. ++++.+|+....
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 232 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL------------- 232 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-------------
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC-------------
Confidence 34568999999999999999999877 69999999 99999999999998874 899999987321
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
+ ..||+|++- .++. .+..+ .+.++|+++.+.|+|||+|+......
T Consensus 233 ------p-~~~D~v~~~------~vlh-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 233 ------P-AGAGGYVLS------AVLH-------DWDDL-------SAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp ------C-CSCSEEEEE------SCGG-------GSCHH-------HHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred ------C-CCCcEEEEe------hhhc-------cCCHH-------HHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 2 279999952 1211 11221 24578999999999999999876543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=100.43 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=86.0
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.++..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++++...++. ++++.+|+.+..
T Consensus 178 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 246 (360)
T 1tw3_A 178 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------- 246 (360)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----------
T ss_pred hCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC----------
Confidence 34566788999999999999999998876 79999999 99999999999998884 899999987522
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ..||+|++... +. .+... ...++|+++.+.|+|||+++++...
T Consensus 247 ---------~-~~~D~v~~~~v------l~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 247 ---------P-RKADAIILSFV------LL-------NWPDH-------DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp ---------S-SCEEEEEEESC------GG-------GSCHH-------HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ---------C-CCccEEEEccc------cc-------CCCHH-------HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 2 34999996432 11 11111 1246899999999999999987654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=96.83 Aligned_cols=153 Identities=11% Similarity=0.116 Sum_probs=88.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.+++.+|||+|||||+++..+++..+ ..++|+|+.......... ....|..+..+..++....
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~~ii~~~~~~dv~~--------------- 135 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGWNIITFKDKTDIHR--------------- 135 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTGGGEEEECSCCTTT---------------
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCCCeEEEeccceehh---------------
Confidence 56788999999999999999887766 578888886432100000 0111223334444432211
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC-CEEEEEcCCCCccccHHHH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG-GKLLFVTCSLWFEESEEQA 287 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg-G~lvysTCS~~~~Ene~vv 287 (329)
+.+..||+|++|.--+ +|.. .+.+.. +..+|+.|.++|+|| |.+|...-.-...+-.+.+
T Consensus 136 ---l~~~~~DlVlsD~apn-sG~~-------------~~D~~r--s~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~ 196 (277)
T 3evf_A 136 ---LEPVKCDTLLCDIGES-SSSS-------------VTEGER--TVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKL 196 (277)
T ss_dssp ---SCCCCCSEEEECCCCC-CSCH-------------HHHHHH--HHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred ---cCCCCccEEEecCccC-cCch-------------HHHHHH--HHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHH
Confidence 3457899999997544 5541 122222 233589999999999 9999754321123333444
Q ss_pred HHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEE
Q psy15212 288 IIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLF 324 (329)
Q Consensus 288 ~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l 324 (329)
..+-..+..+.... | ..+....+-|++|+-
T Consensus 197 ~~lk~~F~~V~~~K------P-aSR~~S~E~Y~V~~~ 226 (277)
T 3evf_A 197 ELLQRRFGGTVIRN------P-LSRNSTHEMYYVSGA 226 (277)
T ss_dssp HHHHHHHCCEEECC------T-TSCTTCCCEEEESSC
T ss_pred HHHHHhcCCEEEEe------C-CCCCCCCceEEEEec
Confidence 44444443333332 4 333356677777653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=96.95 Aligned_cols=98 Identities=17% Similarity=0.043 Sum_probs=78.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc-----CCceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL-----NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~-----g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+.+|||+|||+|+.+..+++. +.+|+++|+++.+++.+++++... .-+++++.+|+...
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-------------- 136 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-------------- 136 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--------------
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH--------------
Confidence 4579999999999999999987 589999999999999998876432 12378888888753
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
. ++||+|++|.+- | . .+++.+.+.|+|||.++..+.+.
T Consensus 137 ------~-~~fD~Ii~d~~d---------p--------~----------~~~~~~~~~L~pgG~lv~~~~~~ 174 (262)
T 2cmg_A 137 ------I-KKYDLIFCLQEP---------D--------I----------HRIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_dssp ------C-CCEEEEEESSCC---------C--------H----------HHHHHHHTTEEEEEEEEEEEECT
T ss_pred ------H-hhCCEEEECCCC---------h--------H----------HHHHHHHHhcCCCcEEEEEcCCc
Confidence 1 679999999531 1 0 16888999999999999876553
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=99.04 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=74.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHH----hCC-CEE--EEEeCChhHHHHHHHHHHHc-CCc-e--EEEecCccccchhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLE----IAD-IKL--ISVDNNLSRLNMISENLKRL-NLK-A--TLILSDISKINLKKLY 198 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~----~~~-~~v--~avD~~~~rl~~l~~n~~~~-g~~-v--~~~~~D~~~~~~~~~~ 198 (329)
+.++.+|||+|||+|..+..++. ..+ ..| +++|.|+.+++.+++++... ++. + .+..+|+..+.. .+.
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 128 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQS-RML 128 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHH-HHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhh-hhc
Confidence 45678999999999987765432 223 544 99999999999999998764 443 3 344555443210 000
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+.+++||+|++- .++..-++ ..+.|+++.++|||||+++.++.+
T Consensus 129 -----------~~~~~~~fD~V~~~------~~l~~~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 129 -----------EKKELQKWDFIHMI------QMLYYVKD----------------IPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp -----------TTTCCCCEEEEEEE------SCGGGCSC----------------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -----------cccCCCceeEEEEe------eeeeecCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 00135789999852 12222121 245799999999999999987543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-08 Score=95.55 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=87.3
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.++..++.+|||+|||+|..+..+++..+ .+++++|+ +..++.+++++...++. ++++.+|+....
T Consensus 197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---------- 265 (369)
T 3gwz_A 197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---------- 265 (369)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC----------
T ss_pred hCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC----------
Confidence 34556788999999999999999999876 69999999 99999999999999874 899999987321
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
+ ..||+|++-- ++. .+... ...++|+++.+.|+|||+|+.......
T Consensus 266 ---------p-~~~D~v~~~~------vlh-------~~~d~-------~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 266 ---------P-DGADVYLIKH------VLH-------DWDDD-------DVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp ---------C-SSCSEEEEES------CGG-------GSCHH-------HHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred ---------C-CCceEEEhhh------hhc-------cCCHH-------HHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 2 2799998632 111 11221 134689999999999999998765443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.8e-10 Score=98.30 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
+|.+|||+|||+|+.+..+++....+|+|+|+|+.+++.++++..+.. ..-..++..... ..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~---~~~~~~~~~~~~---------------~~ 98 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVV---VMEQFNFRNAVL---------------AD 98 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEE---EECSCCGGGCCG---------------GG
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccc---ccccceEEEeCH---------------hH
Confidence 467999999999999999998732699999999999998666533221 111112222110 00
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+....||.+.+|...+.. ..+|..+.++|||||++++.
T Consensus 99 ~~~~~~d~~~~D~v~~~l-------------------------~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFISL-------------------------DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CCSCCCSEEEECCSSSCG-------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred cCcCCCCEEEEEEEhhhH-------------------------HHHHHHHHHhccCCCEEEEE
Confidence 112247888888775532 34799999999999999986
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=96.09 Aligned_cols=112 Identities=13% Similarity=0.214 Sum_probs=86.9
Q ss_pred CCCC-CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 129 DIRS-GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 129 ~~~~-g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+..+ +.+|||+|||+|..+..+++..+ .+++++|+ +..++.+++++.+.++. ++++.+|+....
T Consensus 175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 242 (352)
T 3mcz_A 175 GVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR----------- 242 (352)
T ss_dssp GGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG-----------
T ss_pred CCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc-----------
Confidence 4455 78999999999999999999876 79999999 88999999999998884 899999988753
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
. ...+.||+|++-- ++. .+..++ ..++|+++.+.|+|||+|+.....+
T Consensus 243 -----~-~~~~~~D~v~~~~------vlh-------~~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (352)
T 3mcz_A 243 -----N-FEGGAADVVMLND------CLH-------YFDARE-------AREVIGHAAGLVKPGGALLILTMTM 290 (352)
T ss_dssp -----G-GTTCCEEEEEEES------CGG-------GSCHHH-------HHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred -----c-cCCCCccEEEEec------ccc-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 1 1245699999621 221 112222 3568999999999999998876443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.4e-09 Score=96.99 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=84.3
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
++..+ .+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++++.+.++. ++++.+|+....
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 230 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV----------- 230 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC-----------
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC-----------
Confidence 34455 8999999999999999999876 69999999 99999999999887763 899999987621
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
++.||+|++.-. +. .+.... ..++|+++.+.|+|||+|+......
T Consensus 231 ---------~~~~D~v~~~~v------l~-------~~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 231 ---------PSNGDIYLLSRI------IG-------DLDEAA-------SLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp ---------CSSCSEEEEESC------GG-------GCCHHH-------HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred ---------CCCCCEEEEchh------cc-------CCCHHH-------HHHHHHHHHHhcCCCCEEEEEEecc
Confidence 257999995321 11 112221 2578999999999999999886543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=97.75 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=70.8
Q ss_pred HHHHhhhcCCCCC--CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC--------C-c-eEEEecC
Q psy15212 121 AQLAAPLLDIRSG--MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN--------L-K-ATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g--~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g--------~-~-v~~~~~D 188 (329)
...+..++.+.+| ++|||+|||.|..++.+|.+ +++|+++|+++..++.+++++++.+ + . ++++++|
T Consensus 75 ~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 4555566777777 99999999999999999987 4589999999999888888876542 4 2 8899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+..+. .... ..||+|++|||+.
T Consensus 154 ~~~~L----------------~~~~-~~fDvV~lDP~y~ 175 (258)
T 2oyr_A 154 SLTAL----------------TDIT-PRPQVVYLDPMFP 175 (258)
T ss_dssp HHHHS----------------TTCS-SCCSEEEECCCCC
T ss_pred HHHHH----------------HhCc-ccCCEEEEcCCCC
Confidence 88753 1112 3699999999975
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-09 Score=95.07 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=72.2
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
...++..+++.+|++|||+|||+|..|..+++.. ++|+|+|+|+.+++.+++++.. .-.++++++|+.+++.+.
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~~~~---- 91 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFDFSS---- 91 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCCGGG----
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCCHHH----
Confidence 4445566788899999999999999999999865 6999999999999999999875 224899999999875211
Q ss_pred hcccccccccccCCCCCCEEEEccCCc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
...++.|| |+.|+|+.
T Consensus 92 ----------~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 92 ----------VKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp ----------SCCSSCEE-EEEECCHH
T ss_pred ----------hccCCCeE-EEecCCcc
Confidence 11235688 99999975
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.8e-09 Score=95.18 Aligned_cols=101 Identities=12% Similarity=0.070 Sum_probs=81.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
..+|||+|||.|-.++.++...+ .+++|+|+|+.+++.+++|+.++|+...+.+.|.....
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~------------------ 194 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR------------------ 194 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC------------------
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC------------------
Confidence 56999999999999999987655 79999999999999999999999999888899977643
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
..+.||+||+. .-+..|...|+.-+-+.++.|+++|.+|-
T Consensus 195 -p~~~~DvaL~l---------------------kti~~Le~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 195 -LDEPADVTLLL---------------------KTLPCLETQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp -CCSCCSEEEET---------------------TCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred -CCCCcchHHHH---------------------HHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence 45789999852 22445555555444488899999997763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-08 Score=90.48 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCeEEeecCCC---chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAP---GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~---G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+..+|||+|||+ |..+..+++..+ .+|+++|+|+.+++.+++++... -.++++.+|+..... +. ... ....
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~-~~v~~~~~D~~~~~~--~~-~~~-~~~~ 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-PNTAVFTADVRDPEY--IL-NHP-DVRR 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-TTEEEEECCTTCHHH--HH-HSH-HHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC-CCeEEEEeeCCCchh--hh-ccc-hhhc
Confidence 447999999999 988766666555 79999999999999999998532 238899999986420 00 000 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.+....||.|++. +++..-|+. + ...+|+++.+.|+|||+|++++...
T Consensus 152 ---~~d~~~~d~v~~~------~vlh~~~d~-------~-------~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 152 ---MIDFSRPAAIMLV------GMLHYLSPD-------V-------VDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp ---HCCTTSCCEEEET------TTGGGSCTT-------T-------HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred ---cCCCCCCEEEEEe------chhhhCCcH-------H-------HHHHHHHHHHhCCCCcEEEEEEecC
Confidence 0122479999853 333322221 1 3468999999999999999987553
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-09 Score=95.71 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=69.2
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+..+|.++||+.++|+++|.||.|..+++.++ ++|+|+|.++.+++.++ ++ .+-.++++++++.++. .-+
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~~Rv~lv~~nF~~l~-~~L---- 120 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DDPRFSIIHGPFSALG-EYV---- 120 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CCTTEEEEESCGGGHH-HHH----
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cCCcEEEEeCCHHHHH-HHH----
Confidence 34566789999999999999999999999865 89999999999999884 33 2223889999988764 000
Q ss_pred cccccccccccC-CCCCCEEEEccCCccc
Q psy15212 202 NKKTNNRFRFYK-NKYFDRILADLPCTGS 229 (329)
Q Consensus 202 ~~~~~~~~~~~~-~~~fD~Vl~D~PCsg~ 229 (329)
.... .+++|.||.|-.||+.
T Consensus 121 --------~~~g~~~~vDgILfDLGVSS~ 141 (347)
T 3tka_A 121 --------AERDLIGKIDGILLDLGVSSP 141 (347)
T ss_dssp --------HHTTCTTCEEEEEEECSCCHH
T ss_pred --------HhcCCCCcccEEEECCccCHH
Confidence 0001 1369999999999876
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-09 Score=94.77 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=87.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
++++.+|||+|||||+++..+++..+ ..|+++|+.......... .+..+..+..+..++....
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~--------------- 151 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFN--------------- 151 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGG---------------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhh---------------
Confidence 56788999999999999999987777 688999997542111100 0112323222222211111
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC--CEEEEEcCCCCc--c-cc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG--GKLLFVTCSLWF--E-ES 283 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg--G~lvysTCS~~~--~-En 283 (329)
+...++|+||+|.--+ +|.- .+.+.. +..+|+-|.++|+|| |.+|. .++. . +-
T Consensus 152 ---l~~~~~DvVLSDmApn-sG~~-------------~~D~~r--s~~LL~~A~~~Lk~g~~G~Fv~---KvF~pyg~~~ 209 (282)
T 3gcz_A 152 ---MEVIPGDTLLCDIGES-SPSI-------------AVEEQR--TLRVLNCAKQWLQEGNYTEFCI---KVLCPYTPLI 209 (282)
T ss_dssp ---SCCCCCSEEEECCCCC-CSCH-------------HHHHHH--HHHHHHHHHHHHHHHCCCEEEE---EESCCCSHHH
T ss_pred ---cCCCCcCEEEecCccC-CCCh-------------HHHHHH--HHHHHHHHHHHcCCCCCCcEEE---EEecCCCccH
Confidence 2457899999997655 6551 122222 234588999999999 99995 4444 3 33
Q ss_pred HHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEE
Q psy15212 284 EEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLF 324 (329)
Q Consensus 284 e~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l 324 (329)
.+..+.+-..+..+.... | ..+....+-|++|+-
T Consensus 210 ~~l~~~lk~~F~~V~~~K------P-aSR~~S~E~Y~V~~~ 243 (282)
T 3gcz_A 210 MEELSRLQLKHGGGLVRV------P-LSRNSTHEMYWVSGT 243 (282)
T ss_dssp HHHHHHHHHHHCCEEECC------T-TSCTTCCCEEEETTC
T ss_pred HHHHHHHHHhcCCEEEEc------C-CCcccCcceeEEEec
Confidence 334444433443333322 3 323356677777643
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=93.03 Aligned_cols=150 Identities=12% Similarity=0.087 Sum_probs=87.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.++|.+|||+||||||++-.+++..+ ..|+|+|+......... ..+..+..+.....+....
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~-~~~~~~~~iv~~~~~~di~---------------- 141 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPI-HMQTLGWNIVKFKDKSNVF---------------- 141 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CCCBTTGGGEEEECSCCTT----------------
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccc-cccccCCceEEeecCceee----------------
Confidence 35789999999999999999998766 58899999653210000 0001122222222111111
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC-CEEEEEcCCCCc--c-ccH
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG-GKLLFVTCSLWF--E-ESE 284 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg-G~lvysTCS~~~--~-Ene 284 (329)
.+.+..+|+|++|.-.+ +|.. .+.+. .|..+|.-|.++|+|| |.+|.- ++. . +-.
T Consensus 142 --~l~~~~~DlVlsD~APn-sG~~-------------~~D~~--rs~~LL~~A~~~LkpG~G~FV~K---vF~~yG~~~~ 200 (300)
T 3eld_A 142 --TMPTEPSDTLLCDIGES-SSNP-------------LVERD--RTMKVLENFERWKHVNTENFCVK---VLAPYHPDVI 200 (300)
T ss_dssp --TSCCCCCSEEEECCCCC-CSSH-------------HHHHH--HHHHHHHHHHHHCCTTCCEEEEE---ESSTTSHHHH
T ss_pred --ecCCCCcCEEeecCcCC-CCCH-------------HHHHH--HHHHHHHHHHHHhcCCCCcEEEE---eccccCccHH
Confidence 12457899999998877 7752 22232 2344589999999999 999954 444 3 333
Q ss_pred HHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEE
Q psy15212 285 EQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLF 324 (329)
Q Consensus 285 ~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l 324 (329)
+.+..+-..+..+.... | ..+....+-|++|..
T Consensus 201 ~ll~~lk~~F~~V~~~K------P-aSR~~S~E~Y~V~~~ 233 (300)
T 3eld_A 201 EKLERLQLRFGGGIVRV------P-FSRNSTHEMYYISGA 233 (300)
T ss_dssp HHHHHHHHHHCCEEECC------T-TSCTTCCCEEEESSC
T ss_pred HHHHHHHHhCCcEEEEe------C-CCCCCChHHeeeccC
Confidence 34444433333333322 4 333356677777654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=89.56 Aligned_cols=107 Identities=15% Similarity=-0.014 Sum_probs=80.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+..+|||+|||.|-.++.++ .+..++|+|+|+.+++.+++++.++|.+..+.++|.....
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~----------------- 164 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP----------------- 164 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC-----------------
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC-----------------
Confidence 356799999999999998877 3479999999999999999999999988899999987654
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE-cCCCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV-TCSLW 279 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys-TCS~~ 279 (329)
..+.||+|++. .-+..|...|+.-+.++++.|+++|.+|-. |-|+.
T Consensus 165 --~~~~~DvvLll---------------------k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~ 211 (253)
T 3frh_A 165 --PAEAGDLALIF---------------------KLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLG 211 (253)
T ss_dssp --CCCBCSEEEEE---------------------SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC---
T ss_pred --CCCCcchHHHH---------------------HHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhc
Confidence 34689999852 124445555555555888889998866533 33544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=93.50 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=71.2
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYI 199 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~ 199 (329)
...-++..+++.+| +|||+|||+|..|..+++.. .+|+|+|+|+.+++.+++++.. -+++++++|+.+++.+
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~--~~v~vi~~D~l~~~~~---- 106 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG--LPVRLVFQDALLYPWE---- 106 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT--SSEEEEESCGGGSCGG----
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC--CCEEEEECChhhCChh----
Confidence 34445566778889 99999999999999999875 6999999999999999998862 3489999999887511
Q ss_pred hhcccccccccccCCCCCCEEEEccCCc
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
....+|.|+.|+|+.
T Consensus 107 -------------~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 107 -------------EVPQGSLLVANLPYH 121 (271)
T ss_dssp -------------GSCTTEEEEEEECSS
T ss_pred -------------hccCccEEEecCccc
Confidence 112689999999986
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.6e-09 Score=92.82 Aligned_cols=123 Identities=12% Similarity=0.097 Sum_probs=76.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-----CEEEEEeC--ChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-----IKLISVDN--NLSRLNMISENLKRLNLK-ATLILS-DISKINLKKLYID 200 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-----~~v~avD~--~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~~~~ 200 (329)
++||.+|+|+|||||+.+..++++.+ +.++|+|+ .+-.. ...|+. +.+..+ |++.+.
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~------- 136 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKP------- 136 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSC-------
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCC-------
Confidence 67899999999999999999998733 46667772 21110 003444 455556 887643
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC-EEEEEcCCCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG-KLLFVTCSLW 279 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG-~lvysTCS~~ 279 (329)
+.++|+||+|.--+ +|.. .+.+...+. .|+-|.++|+||| .+|. -++
T Consensus 137 -------------~~~~DvVLSDMAPn-SG~~-------------~vD~~Rs~~--aL~~A~~~Lk~gG~~Fvv---KVF 184 (269)
T 2px2_A 137 -------------SEISDTLLCDIGES-SPSA-------------EIEEQRTLR--ILEMVSDWLSRGPKEFCI---KIL 184 (269)
T ss_dssp -------------CCCCSEEEECCCCC-CSCH-------------HHHHHHHHH--HHHHHHHHHTTCCSEEEE---EES
T ss_pred -------------CCCCCEEEeCCCCC-CCcc-------------HHHHHHHHH--HHHHHHHHhhcCCcEEEE---EEC
Confidence 45899999997555 5541 122221111 6788889999999 7773 444
Q ss_pred ccccHHHHH---HHHhhCCCcE
Q psy15212 280 FEESEEQAI---IFSKNHKDSI 298 (329)
Q Consensus 280 ~~Ene~vv~---~~l~~~~~~~ 298 (329)
...-+++.+ .+-..+....
T Consensus 185 qg~~~~~~~~l~~lk~~F~~vk 206 (269)
T 2px2_A 185 CPYMPKVIEKLESLQRRFGGGL 206 (269)
T ss_dssp CTTSHHHHHHHHHHHHHHCCEE
T ss_pred CCCchHHHHHHHHHHHHcCCEE
Confidence 443344433 4444444433
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-09 Score=102.13 Aligned_cols=129 Identities=10% Similarity=0.108 Sum_probs=87.1
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceE---EEecCccccchhhhhhhhcc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKAT---LILSDISKINLKKLYIDINK 203 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~---~~~~D~~~~~~~~~~~~~~~ 203 (329)
.+.+.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++ ++... +...++..++
T Consensus 102 ~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~---------- 166 (416)
T 4e2x_A 102 TELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR---------- 166 (416)
T ss_dssp TTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH----------
T ss_pred HhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc----------
Confidence 345678899999999999999999985 45999999999999988766 44421 1112222221
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC------
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS------ 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS------ 277 (329)
+.+++||+|++. +++.+-++ ...+|+.+.++|||||++++++-.
T Consensus 167 --------~~~~~fD~I~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 216 (416)
T 4e2x_A 167 --------RTEGPANVIYAA------NTLCHIPY----------------VQSVLEGVDALLAPDGVFVFEDPYLGDIVA 216 (416)
T ss_dssp --------HHHCCEEEEEEE------SCGGGCTT----------------HHHHHHHHHHHEEEEEEEEEEEECHHHHHH
T ss_pred --------cCCCCEEEEEEC------ChHHhcCC----------------HHHHHHHHHHHcCCCeEEEEEeCChHHhhh
Confidence 134789999963 33333322 356899999999999999987532
Q ss_pred ------C----CccccHHHHHHHHhhCCCcEEec
Q psy15212 278 ------L----WFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 278 ------~----~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
+ ...-+.+.+..+++++ +|+.+.
T Consensus 217 ~~~~~~~~~~~~~~~s~~~l~~ll~~a-Gf~~~~ 249 (416)
T 4e2x_A 217 KTSFDQIFDEHFFLFSATSVQGMAQRC-GFELVD 249 (416)
T ss_dssp HTCGGGCSTTCCEECCHHHHHHHHHHT-TEEEEE
T ss_pred hcchhhhhhhhhhcCCHHHHHHHHHHc-CCEEEE
Confidence 1 0112445667777766 666554
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.1e-08 Score=84.44 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=85.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC--c--eEEEecCccccchhhhhhhhccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL--K--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~--~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+..+||++|+ |.-|+.+|++.+++|+++|.+++..+.+++++++.|+ . ++++.+|+.... .+.-+.+...-
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~--~wg~p~~~~~~ 104 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTG--DWGHPVSDAKW 104 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBC--GGGCBSSSTTG
T ss_pred hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhh--cccccccchhh
Confidence 34679999997 6777778874358999999999999999999999997 3 889999976431 00000000000
Q ss_pred cccc--------ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 207 NRFR--------FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 207 ~~~~--------~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
..+. ....+.||+|++|+.-. ...+..+.++|+|||+|+.-..+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~---------------------------~~~~~~~l~~l~~GG~Iv~DNv~~ 157 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR---------------------------VGCALATAFSITRPVTLLFDDYSQ 157 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH---------------------------HHHHHHHHHHCSSCEEEEETTGGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc---------------------------hhHHHHHHHhcCCCeEEEEeCCcC
Confidence 0000 00136899999998511 134555778999999998765443
Q ss_pred CccccHHHHHHHHh
Q psy15212 279 WFEESEEQAIIFSK 292 (329)
Q Consensus 279 ~~~Ene~vv~~~l~ 292 (329)
.+ ....+..|++
T Consensus 158 r~--~y~~v~~~~~ 169 (202)
T 3cvo_A 158 RR--WQHQVEEFLG 169 (202)
T ss_dssp CS--SGGGGHHHHC
T ss_pred Cc--chHHHHHHHh
Confidence 43 3345667765
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=92.75 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=74.2
Q ss_pred CCCeEEeecCCCch----HHHHHHHhCC-----CEEEEEeCChhHHHHHHHHHH--------------Hc---------C
Q psy15212 132 SGMYVLDACSAPGG----KTCHLLEIAD-----IKLISVDNNLSRLNMISENLK--------------RL---------N 179 (329)
Q Consensus 132 ~g~~VLDlcag~G~----kt~~la~~~~-----~~v~avD~~~~rl~~l~~n~~--------------~~---------g 179 (329)
++.+|||+|||+|. .+..+++..+ .+|+|+|+|+.+++.+++++- ++ |
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999998 5556666533 389999999999999998741 10 1
Q ss_pred ---C------ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH
Q psy15212 180 ---L------KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 250 (329)
Q Consensus 180 ---~------~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l 250 (329)
+ .+.+..+|+...+ +...+.||+|+| . .++ .| ..+
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~-----------------~~~~~~fDlI~c----r--nvl------iy-f~~------ 228 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ-----------------YNVPGPFDAIFC----R--NVM------IY-FDK------ 228 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS-----------------CCCCCCEEEEEE----C--SSG------GG-SCH------
T ss_pred ceeechhhcccCeEEecccCCCC-----------------CCcCCCeeEEEE----C--Cch------Hh-CCH------
Confidence 1 2677788877632 111368999997 1 121 11 111
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 251 SKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 251 ~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..|.++++...+.|+|||+|+..
T Consensus 229 -~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 229 -TTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp -HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred -HHHHHHHHHHHHHhCCCcEEEEE
Confidence 23688999999999999999975
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-09 Score=98.59 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCeEEeecCC------CchHHHHHHHhC-C-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 132 SGMYVLDACSA------PGGKTCHLLEIA-D-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 132 ~g~~VLDlcag------~G~kt~~la~~~-~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
++.+|||+||| +|+.++.+++.. + ++|+|+|+|+.+. ...-+++++++|+.+++...-
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlpf~~~------ 281 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAEFLDR------ 281 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHHHHHH------
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccchhhh------
Confidence 46799999999 788888888653 3 7999999999973 122248999999988641100
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+ ....+.||+|++|.- + + ...+...|+.++++|||||+++++..
T Consensus 282 -----l-~~~d~sFDlVisdgs--------H-----~----------~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 282 -----I-ARRYGPFDIVIDDGS--------H-----I----------NAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp -----H-HHHHCCEEEEEECSC--------C-----C----------HHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred -----h-hcccCCccEEEECCc--------c-----c----------chhHHHHHHHHHHhcCCCeEEEEEec
Confidence 0 001368999997631 0 0 01245689999999999999999864
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-08 Score=88.64 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=68.7
Q ss_pred hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhh
Q psy15212 120 AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYI 199 (329)
Q Consensus 120 ~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~ 199 (329)
....++..+++.++++|||+|||+|..|..+++....+|+|+|+|+.+++.++++ ...+++++++|+.+++.+.
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~~~~~~~~--- 92 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GDERLEVINEDASKFPFCS--- 92 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCTTTCCGGG---
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcchhhCChhH---
Confidence 3444556667888999999999999999999987337999999999999999987 2334899999998875211
Q ss_pred hhcccccccccccCCCCCCEEEEccCCc
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
. ...| .|+.|+|+.
T Consensus 93 ------------~-~~~~-~vv~NlPy~ 106 (249)
T 3ftd_A 93 ------------L-GKEL-KVVGNLPYN 106 (249)
T ss_dssp ------------S-CSSE-EEEEECCTT
T ss_pred ------------c-cCCc-EEEEECchh
Confidence 0 1234 899999986
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-08 Score=89.13 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=68.9
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCE----EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK----LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~----v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~ 196 (329)
...++..+++.++++|||+|||+|..|..+++... . |+|+|+|+.+++.++++. .-.++++++|+.+++.+.
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGGGCCGGG
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChhcCChhH
Confidence 34455666788999999999999999999998754 5 999999999999999993 234899999999876221
Q ss_pred hhhhhcccccccccccCCC--CCCEEEEccCCc
Q psy15212 197 LYIDINKKTNNRFRFYKNK--YFDRILADLPCT 227 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~--~fD~Vl~D~PCs 227 (329)
+ .... ..+.|+.++|+.
T Consensus 107 ~--------------~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 107 I--------------ARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp G--------------SCSSSSCCEEEEEECCHH
T ss_pred h--------------cccccCCceEEEEccCcc
Confidence 1 1101 345899999976
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-08 Score=92.48 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.++..++.+|||+|||+|..+..+++..+ .+++++|+ +..+. +++++..+.. ++++.+|+....
T Consensus 179 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~---------- 245 (348)
T 3lst_A 179 AGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREV---------- 245 (348)
T ss_dssp HSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCC----------
T ss_pred hCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCC----------
Confidence 44567788999999999999999999877 68999999 44443 3333334443 889999987321
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ .||+|++-- ++. .+...+ ..++|+++.+.|||||+|+.....
T Consensus 246 ---------p--~~D~v~~~~------vlh-------~~~d~~-------~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 246 ---------P--HADVHVLKR------ILH-------NWGDED-------SVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp ---------C--CCSEEEEES------CGG-------GSCHHH-------HHHHHHHHHHTCCTTCEEEEEECC
T ss_pred ---------C--CCcEEEEeh------hcc-------CCCHHH-------HHHHHHHHHHhcCCCCEEEEEEec
Confidence 2 799998521 221 112211 246899999999999999987654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.5e-08 Score=87.67 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCeEEeecCCC--chHHHHHHHh-CC-CEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhcccccc
Q psy15212 133 GMYVLDACSAP--GGKTCHLLEI-AD-IKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~--G~kt~~la~~-~~-~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+|||+|||. |+.+..+++. .+ ++|+++|.|+.+++.+++++...+. .++++.+|++.+.. +. . . .
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~--~l-~-~----~ 150 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPAS--IL-D-A----P 150 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHH--HH-T-C----H
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhh--hh-c-c----c
Confidence 36899999997 5566767664 34 7999999999999999999876543 38899999988530 00 0 0 0
Q ss_pred cccccCCCCCC-----EEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFD-----RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD-----~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...+.|| .|+++ +++..-++ .++ +..++++..+.|+|||+|+.++-+
T Consensus 151 ----~~~~~~D~~~p~av~~~------avLH~l~d------~~~-------p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 151 ----ELRDTLDLTRPVALTVI------AIVHFVLD------EDD-------AVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp ----HHHTTCCTTSCCEEEEE------SCGGGSCG------GGC-------HHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred ----ccccccCcCCcchHHhh------hhHhcCCc------hhh-------HHHHHHHHHHhCCCCcEEEEEecc
Confidence 0012343 45542 33332222 111 246899999999999999999754
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-07 Score=83.73 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=93.7
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC----ceEEEecCccccchhhhhhh
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL----KATLILSDISKINLKKLYID 200 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~----~v~~~~~D~~~~~~~~~~~~ 200 (329)
+.+.| .+||=+|.|.|+.+-.+++..+ .+|+.||+++..++.+++-+... +. +++++.+|+..+-
T Consensus 80 ~~p~p-k~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l------- 151 (294)
T 3o4f_A 80 AHGHA-KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV------- 151 (294)
T ss_dssp HSSCC-CEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT-------
T ss_pred hCCCC-CeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH-------
Confidence 34444 5999999999999999997655 69999999999999999887542 21 2899999999864
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc--CCC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT--CSL 278 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT--CS~ 278 (329)
. ...++||+|++|.+-. .|. +...+ ..++++.+.+.|+|||.++.-+ +.+
T Consensus 152 ---------~-~~~~~yDvIi~D~~dp-~~~----~~~L~-------------t~eFy~~~~~~L~p~Gv~v~q~~sp~~ 203 (294)
T 3o4f_A 152 ---------N-QTSQTFDVIISDCTDP-IGP----GESLF-------------TSAFYEGCKRCLNPGGIFVAQNGVCFL 203 (294)
T ss_dssp ---------S-CSSCCEEEEEESCCCC-CCT----TCCSS-------------CCHHHHHHHHTEEEEEEEEEEEEESSS
T ss_pred ---------h-hccccCCEEEEeCCCc-CCC----chhhc-------------CHHHHHHHHHHhCCCCEEEEecCCccc
Confidence 1 1346899999998742 111 11111 2357888899999999998643 334
Q ss_pred CccccHHHHHHHHhhCCCcE
Q psy15212 279 WFEESEEQAIIFSKNHKDSI 298 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~ 298 (329)
+++.-..+.+.+-+-.+...
T Consensus 204 ~~~~~~~~~~~l~~~F~~v~ 223 (294)
T 3o4f_A 204 QQEEAIDSHRKLSHYFSDVG 223 (294)
T ss_dssp CCHHHHHHHHHHHHHCSEEE
T ss_pred ChHHHHHHHHHHHhhCCcee
Confidence 44433444444444455443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.5e-08 Score=89.76 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=71.0
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
+...|.+++|..++|++||.||.|..+++. +++|+|+|.++..++.+++ ++. -.++++++|+.++.. .+
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~--~rv~lv~~~f~~l~~-~L------ 82 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL--PGLTVVQGNFRHLKR-HL------ 82 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC--TTEEEEESCGGGHHH-HH------
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc--CCEEEEECCcchHHH-HH------
Confidence 345667889999999999999999999998 6799999999999999998 654 248999999988640 00
Q ss_pred cccccccccCCCCCCEEEEccCCcc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg 228 (329)
......+||.|++|..+|+
T Consensus 83 ------~~~g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 83 ------AALGVERVDGILADLGVSS 101 (285)
T ss_dssp ------HHTTCSCEEEEEEECSCCH
T ss_pred ------HHcCCCCcCEEEeCCcccc
Confidence 0012257999999999887
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.3e-07 Score=85.03 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=82.8
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.++..+..+|+|+|||+|..+..+++..+ .+++..|. +..++.+++++...+.. ++++.+|+...+
T Consensus 174 ~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~----------- 241 (353)
T 4a6d_A 174 AFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP----------- 241 (353)
T ss_dssp SSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-----------
T ss_pred hcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-----------
Confidence 33556678999999999999999999988 68888997 88899999888765554 899999987543
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
...+|+|++- .++ ..|..++ -.++|+++.+.|+|||+|+....-+.
T Consensus 242 ---------~~~~D~~~~~------~vl-------h~~~d~~-------~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 242 ---------LPEADLYILA------RVL-------HDWADGK-------CSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp ---------CCCCSEEEEE------SSG-------GGSCHHH-------HHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred ---------CCCceEEEee------eec-------ccCCHHH-------HHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 2357999851 111 1233333 24689999999999999988765443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.53 E-value=6.6e-08 Score=87.21 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=67.0
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCE--EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYI 199 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~--v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~ 199 (329)
..++..+++.+|++|||+|||+|..|. ++. . .+ |+|+|+|+.+++.+++++...+ .++++++|+.+++.+..
T Consensus 11 ~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~-~v~~i~~D~~~~~~~~~-- 84 (252)
T 1qyr_A 11 DSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGP-KLTIYQQDAMTFNFGEL-- 84 (252)
T ss_dssp HHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGG-GEEEECSCGGGCCHHHH--
T ss_pred HHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCC-ceEEEECchhhCCHHHh--
Confidence 334555678899999999999999999 654 3 46 9999999999999998876431 48999999988652211
Q ss_pred hhcccccccccccC-CCCCCEEEEccCCcc
Q psy15212 200 DINKKTNNRFRFYK-NKYFDRILADLPCTG 228 (329)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~fD~Vl~D~PCsg 228 (329)
+. ....|.|+.++|+.-
T Consensus 85 ------------~~~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 85 ------------AEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp ------------HHHHTSCEEEEEECCTTT
T ss_pred ------------hcccCCceEEEECCCCCc
Confidence 00 124579999999863
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-07 Score=93.28 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC-CceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN-LKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+-+|||+|||.|..+..||++ |+.|+|+|.++..++.++......| +++++.++|+.++. .
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~----------------~ 128 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI----------------A 128 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHH----------------H
T ss_pred CCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHh----------------h
Confidence 4569999999999999999975 6799999999999999999998887 46999999988763 1
Q ss_pred ccCCCCCCEEEE
Q psy15212 211 FYKNKYFDRILA 222 (329)
Q Consensus 211 ~~~~~~fD~Vl~ 222 (329)
...+++||+|+|
T Consensus 129 ~~~~~~fD~v~~ 140 (569)
T 4azs_A 129 ALEEGEFDLAIG 140 (569)
T ss_dssp HCCTTSCSEEEE
T ss_pred hccCCCccEEEE
Confidence 124578999994
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-07 Score=84.02 Aligned_cols=128 Identities=17% Similarity=0.239 Sum_probs=85.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHh-------CC------CEEEEEeCCh---hHHH-----------HHHHHHHHc----
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEI-------AD------IKLISVDNNL---SRLN-----------MISENLKRL---- 178 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~-------~~------~~v~avD~~~---~rl~-----------~l~~n~~~~---- 178 (329)
.+++.+|||+|+|+|..++.+++. .+ .+++++|..+ +.+. .++++++.+
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 345679999999999999887764 22 3899999987 3333 556666652
Q ss_pred ----------C-CceEEEecCccccchhhhhhhhcccccccccccCC---CCCCEEEEcc--CCccccccccCCCCcccC
Q psy15212 179 ----------N-LKATLILSDISKINLKKLYIDINKKTNNRFRFYKN---KYFDRILADL--PCTGSGVVRRNPDIPWLR 242 (329)
Q Consensus 179 ----------g-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~fD~Vl~D~--PCsg~G~~~~~p~~~~~~ 242 (329)
+ ..++++.+|+.+.- +.... ..||.|++|+ |+ ++|++ |
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l----------------~~~~~~~~~~~D~iflD~fsp~-------~~p~l-w-- 191 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELI----------------SQLDDSLNQKVDAWFLDGFAPA-------KNPDM-W-- 191 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHG----------------GGSCGGGTTCEEEEEECSSCTT-------TCGGG-C--
T ss_pred cchhheeccCCceEEEEEECcHHHHH----------------hhcccccCCeEEEEEECCCCcc-------cChhh-c--
Confidence 1 23678899988742 11111 3799999997 43 34532 2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecC
Q psy15212 243 RKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302 (329)
Q Consensus 243 ~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~ 302 (329)
+.++++.+.+.|+|||+|+.-|++ ..|..-|... +|.+...
T Consensus 192 -----------~~~~l~~l~~~L~pGG~l~tysaa-------~~vrr~L~~a-GF~v~~~ 232 (257)
T 2qy6_A 192 -----------TQNLFNAMARLARPGGTLATFTSA-------GFVRRGLQEA-GFTMQKR 232 (257)
T ss_dssp -----------CHHHHHHHHHHEEEEEEEEESCCB-------HHHHHHHHHH-TEEEEEE
T ss_pred -----------CHHHHHHHHHHcCCCcEEEEEeCC-------HHHHHHHHHC-CCEEEeC
Confidence 246789999999999998843332 3566666664 6665543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.2e-07 Score=83.81 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.++++ -.++++.+|+.. +
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--------------- 258 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-G--------------- 258 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-C---------------
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-C---------------
Confidence 45678999999999999999999887 69999999 8777655432 238899999876 3
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW 279 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~ 279 (329)
.+. . |+|++-- ++. .+..++ ..++|+++.+.|+|||+|+.....+.
T Consensus 259 ---~p~-~-D~v~~~~------vlh-------~~~~~~-------~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 259 ---VPK-G-DAIFIKW------ICH-------DWSDEH-------CLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp ---CCC-C-SEEEEES------CGG-------GBCHHH-------HHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred ---CCC-C-CEEEEec------hhh-------cCCHHH-------HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 122 2 9998522 111 122222 24689999999999999998776543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=82.85 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=74.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..+..+++..+ .+++++|+ +..++.++++ -.++++.+|+.. +
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--------------- 256 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-E--------------- 256 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-C---------------
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-C---------------
Confidence 55678999999999999999999887 79999999 7777655431 238899999876 3
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.+. . |+|++-- ++ ..+..++ -.++|+++.+.|||||+|+.....+
T Consensus 257 ---~p~-~-D~v~~~~------vl-------h~~~d~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 257 ---VPS-G-DTILMKW------IL-------HDWSDQH-------CATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp ---CCC-C-SEEEEES------CG-------GGSCHHH-------HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred ---CCC-C-CEEEehH------Hh-------ccCCHHH-------HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 122 2 9998521 11 1122222 2468999999999999999876554
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-07 Score=84.95 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=73.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++. -.++++.+|+.. +
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--------------- 264 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-S--------------- 264 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-C---------------
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-C---------------
Confidence 45678999999999999999999876 79999999 8888765541 128899999876 3
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+ . ||+|++. .++.. +...+ ..++|+++.+.|+|||+|+.+..
T Consensus 265 ---~~-~-~D~v~~~------~~lh~-------~~d~~-------~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 265 ---VP-Q-GDAMILK------AVCHN-------WSDEK-------CIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp ---CC-C-EEEEEEE------SSGGG-------SCHHH-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CC-C-CCEEEEe------ccccc-------CCHHH-------HHHHHHHHHHhcCCCCEEEEEEe
Confidence 12 2 9999962 22211 11111 24689999999999999998753
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-07 Score=79.10 Aligned_cols=93 Identities=22% Similarity=0.328 Sum_probs=66.8
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+++++|++|||+|||. +++|+|+.+++.++++... .++++.+|+..++.
T Consensus 8 ~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~------------- 56 (176)
T 2ld4_A 8 FGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQ------------- 56 (176)
T ss_dssp TTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGG-------------
T ss_pred cCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCcc-------------
Confidence 4578999999999986 1389999999999988643 27888899887650
Q ss_pred cccccCCCCCCEEEEccCCccccccccC-CCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRN-PDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~-p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.++.||.|++.- ++... ++ ..++|+++.+.|||||+++++.
T Consensus 57 --~~~~~~~fD~V~~~~------~l~~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 57 --SAHKESSFDIILSGL------VPGSTTLH----------------SAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp --GCCCSSCEEEEEECC------STTCCCCC----------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccCCCCCEeEEEECC------hhhhcccC----------------HHHHHHHHHHHCCCCEEEEEEc
Confidence 001457899999621 11111 11 1457999999999999999853
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=82.23 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+|..+..+++..+ .+++++|+ +.+++.+++. -.++++.+|+.. +
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~--------------- 243 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-S--------------- 243 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-C---------------
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-C---------------
Confidence 45678999999999999999999876 79999999 8888766541 128888999865 3
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC---CCEEEEEcCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP---GGKLLFVTCSL 278 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---gG~lvysTCS~ 278 (329)
.+ .||+|++-- ++. .+...+ ..++|+++.+.||| ||+|+......
T Consensus 244 ---~p--~~D~v~~~~------~lh-------~~~d~~-------~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 244 ---IP--NADAVLLKY------ILH-------NWTDKD-------CLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp ---CC--CCSEEEEES------CGG-------GSCHHH-------HHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred ---CC--CccEEEeeh------hhc-------cCCHHH-------HHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 12 399999621 221 111111 24689999999999 99998876543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=81.26 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=56.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+++|++|||+||+|||+|..++++ +++|+|||+.+-. ..+... -.|+++.+|+....
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l~-----~~l~~~-~~V~~~~~d~~~~~---------------- 265 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPMA-----QSLMDT-GQVTWLREDGFKFR---------------- 265 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCCC-----HHHHTT-TCEEEECSCTTTCC----------------
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhcC-----hhhccC-CCeEEEeCcccccc----------------
Confidence 578999999999999999999986 4699999975411 112111 12788899988765
Q ss_pred cccCCCCCCEEEEccCCccc
Q psy15212 210 RFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.....||.|+||.-+.-+
T Consensus 266 --~~~~~~D~vvsDm~~~p~ 283 (375)
T 4auk_A 266 --PTRSNISWMVCDMVEKPA 283 (375)
T ss_dssp --CCSSCEEEEEECCSSCHH
T ss_pred --CCCCCcCEEEEcCCCChH
Confidence 234689999999977633
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=77.42 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILS-DISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~~~~~~~~~~ 206 (329)
++++..|||+||||||.+-.++...+ .+|+|+|+-..--+. -..++.+|-+ +++..+ |...+.
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~------------- 141 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLP------------- 141 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCC-------------
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecC-------------
Confidence 57889999999999999998988777 689999996543210 0112356666 788877 875543
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
...+|.||||--=| +|. |. -+.... .+.|+-+.++|++ |.++ |-++.-+..++
T Consensus 142 -------~~~~DtllcDIgeS-s~~----~~------vE~~Rt-----lrvLela~~wL~~-~~fc---~KVl~py~p~v 194 (267)
T 3p8z_A 142 -------PEKCDTLLCDIGES-SPS----PT------VEESRT-----IRVLKMVEPWLKN-NQFC---IKVLNPYMPTV 194 (267)
T ss_dssp -------CCCCSEEEECCCCC-CSC----HH------HHHHHH-----HHHHHHHGGGCSS-CEEE---EEESCCCSHHH
T ss_pred -------CccccEEEEecCCC-CCC----hh------hhhhHH-----HHHHHHHHHhccc-CCEE---EEEccCCChhH
Confidence 36799999995422 111 00 011111 2278888899998 6665 45554555455
Q ss_pred HHH
Q psy15212 287 AII 289 (329)
Q Consensus 287 v~~ 289 (329)
++.
T Consensus 195 ~e~ 197 (267)
T 3p8z_A 195 IEH 197 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.26 E-value=5e-06 Score=75.97 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=90.9
Q ss_pred CeEEeecCCCchHHHHHHHhC------CCEEEEEeCCh--------------------------hHHHHHHHHHHHcCC-
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA------DIKLISVDNNL--------------------------SRLNMISENLKRLNL- 180 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~------~~~v~avD~~~--------------------------~rl~~l~~n~~~~g~- 180 (329)
..||++|++.|+-++.+|+.+ +++|+++|..+ .+++.+++|+++.|+
T Consensus 108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~ 187 (282)
T 2wk1_A 108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLL 187 (282)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCC
T ss_pred CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCC
Confidence 499999999999999988754 36999999742 157889999999998
Q ss_pred -c-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 181 -K-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 181 -~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
+ ++++.+|+.+.- +....++||.|.+|+--. .-....|
T Consensus 188 ~~~I~li~Gda~etL----------------~~~~~~~~d~vfIDaD~y------------------------~~~~~~L 227 (282)
T 2wk1_A 188 DEQVRFLPGWFKDTL----------------PTAPIDTLAVLRMDGDLY------------------------ESTWDTL 227 (282)
T ss_dssp STTEEEEESCHHHHS----------------TTCCCCCEEEEEECCCSH------------------------HHHHHHH
T ss_pred cCceEEEEeCHHHHH----------------hhCCCCCEEEEEEcCCcc------------------------ccHHHHH
Confidence 3 999999987642 112346899999997310 0124578
Q ss_pred HHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCC
Q psy15212 259 NNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHK 295 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~ 295 (329)
+.++..|+|||.++.-...+.+.+ ...+..|+++++
T Consensus 228 e~~~p~L~pGGiIv~DD~~~~~G~-~~Av~Ef~~~~~ 263 (282)
T 2wk1_A 228 TNLYPKVSVGGYVIVDDYMMCPPC-KDAVDEYRAKFD 263 (282)
T ss_dssp HHHGGGEEEEEEEEESSCTTCHHH-HHHHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEEcCCCCCHHH-HHHHHHHHHhcC
Confidence 889999999999998776444544 456777777763
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-06 Score=81.08 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=97.0
Q ss_pred ccccceEEEech----hHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc-----
Q psy15212 108 KFFNGFCSIQDA----AAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL----- 178 (329)
Q Consensus 108 ~~~~G~~~~Qd~----~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~----- 178 (329)
++.+|.+..-+. ..+++...+...+..+||=+|.|-|+.+..+++.-..+|+.||+++..++.+++-+...
T Consensus 177 L~LDG~~Q~te~D~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~ 256 (381)
T 3c6k_A 177 LILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVL 256 (381)
T ss_dssp EEETTEEEEETTCHHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CC
T ss_pred EEECCceeeeCChHHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhh
Confidence 344565544322 23444333333345799999999999999988754479999999999999999865321
Q ss_pred CC----ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHH
Q psy15212 179 NL----KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 254 (329)
Q Consensus 179 g~----~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q 254 (329)
.. .++++.+|+..+- ++. .-..++||+|++|.+-...+. .|. . .......
T Consensus 257 d~pr~~rv~vii~Da~~fl-~~~-------------~~~~~~yDvIIvDl~D~~~s~---~p~--------g-~a~~Lft 310 (381)
T 3c6k_A 257 DNLKGDCYQVLIEDCIPVL-KRY-------------AKEGREFDYVINDLTAVPIST---SPE--------E-DSTWEFL 310 (381)
T ss_dssp SSSEETTEEEEESCHHHHH-HHH-------------HHHTCCEEEEEEECCSSCCCC---C-------------CHHHHH
T ss_pred ccccccceeeehHHHHHHH-Hhh-------------hhccCceeEEEECCCCCcccC---ccc--------C-cchHHHH
Confidence 11 1688999988753 100 002358999999976321111 010 0 0011235
Q ss_pred HHHHHHHHhcCCCCCEEEE-EcCCCCccccHHHHHHHHhh
Q psy15212 255 CKILNNLWKMLKPGGKLLF-VTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 255 ~~lL~~a~~~LkpgG~lvy-sTCS~~~~Ene~vv~~~l~~ 293 (329)
+++++.+.+.|+|||.++. +.|-+.. +.-..+...+++
T Consensus 311 ~eFy~~~~~~L~p~GVlv~Q~~s~~~~-~~~~~i~~tl~~ 349 (381)
T 3c6k_A 311 RLILDLSMKVLKQDGKYFTQGNCVNLT-EALSLYEEQLGR 349 (381)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEEETTCH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcch-hHHHHHHHHHHH
Confidence 6789999999999999886 3444443 332334444444
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4e-06 Score=84.57 Aligned_cols=117 Identities=21% Similarity=0.109 Sum_probs=82.6
Q ss_pred CCeEEeecCCCchH---HHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 133 GMYVLDACSAPGGK---TCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 133 g~~VLDlcag~G~k---t~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+..|||+|||+|-. ++.+++..+ .+|+|||.|+ +...+++..+.+|.. |+++.+|+++..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~------------ 424 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV------------ 424 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC------------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc------------
Confidence 34799999999988 555555554 3899999997 566778888888886 999999999876
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC--cccc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLW--FEES 283 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~--~~En 283 (329)
.++++|+|+...= |...+ .+. ..+.|.++-++|||||.++=+.|+++ +-+.
T Consensus 425 -------LPEKVDIIVSEwM--G~fLl-----------~E~-------mlevL~Ardr~LKPgGimiPs~atlyiapi~~ 477 (637)
T 4gqb_A 425 -------APEKADIIVSELL--GSFAD-----------NEL-------SPECLDGAQHFLKDDGVSIPGEYTSFLAPISS 477 (637)
T ss_dssp -------CSSCEEEEECCCC--BTTBG-----------GGC-------HHHHHHHHGGGEEEEEEEESCEEEEEEEEEEC
T ss_pred -------CCcccCEEEEEcC--ccccc-----------ccC-------CHHHHHHHHHhcCCCcEEccccceEEEEEecC
Confidence 3478999995421 11111 011 12467788899999999986666644 4455
Q ss_pred HHHHHH
Q psy15212 284 EEQAII 289 (329)
Q Consensus 284 e~vv~~ 289 (329)
+..-..
T Consensus 478 ~~l~~e 483 (637)
T 4gqb_A 478 SKLYNE 483 (637)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-06 Score=79.44 Aligned_cols=79 Identities=13% Similarity=-0.056 Sum_probs=62.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+..+||+++|+|..+..++... .+++.+|.++..++.+++|++. .-+++++..|+...- ..+ ..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~-~~~~~V~~~D~~~~L-~~l-------------~~ 155 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHF-NKKVYVNHTDGVSKL-NAL-------------LP 155 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCT-TSCEEEECSCHHHHH-HHH-------------CS
T ss_pred CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCc-CCcEEEEeCcHHHHH-HHh-------------cC
Confidence 5679999999999999988733 6999999999999999999976 223899999976532 110 01
Q ss_pred CCCCCCEEEEccCCc
Q psy15212 213 KNKYFDRILADLPCT 227 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCs 227 (329)
...+||+|++|||+.
T Consensus 156 ~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 156 PPEKRGLIFIDPSYE 170 (283)
T ss_dssp CTTSCEEEEECCCCC
T ss_pred CCCCccEEEECCCCC
Confidence 234799999999976
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-06 Score=73.83 Aligned_cols=127 Identities=10% Similarity=0.108 Sum_probs=77.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEec-Cccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILS-DISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~-D~~~~~~~~~~~~~~~~~~ 206 (329)
++++..|||+||||||++..++...+ .+|+|+|+-..--+. -..++.++-+ +.+... |+..+.
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~------------- 157 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRP------------- 157 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSC-------------
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCC-------------
Confidence 56888999999999999998888777 689999996551100 0001233333 666665 766654
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC-CEEEEEcCCCCccccHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG-GKLLFVTCSLWFEESEE 285 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg-G~lvysTCS~~~~Ene~ 285 (329)
...+|.|+||.- .++|.. . -+.... .+.|+-+.++|++| |.++ |-++.--.++
T Consensus 158 -------~~~~D~ivcDig-eSs~~~----~------ve~~Rt-----l~vLel~~~wL~~~~~~f~---~KVl~pY~~~ 211 (321)
T 3lkz_A 158 -------SECCDTLLCDIG-ESSSSA----E------VEEHRT-----IRVLEMVEDWLHRGPREFC---VKVLCPYMPK 211 (321)
T ss_dssp -------CCCCSEEEECCC-CCCSCH----H------HHHHHH-----HHHHHHHHHHHTTCCCEEE---EEESCTTSHH
T ss_pred -------CCCCCEEEEECc-cCCCCh----h------hhhhHH-----HHHHHHHHHHhccCCCcEE---EEEcCCCChH
Confidence 367999999987 323220 0 011111 12677788889988 8776 3433333334
Q ss_pred H---HHHHHhhCCC
Q psy15212 286 Q---AIIFSKNHKD 296 (329)
Q Consensus 286 v---v~~~l~~~~~ 296 (329)
+ ++.+-.++.+
T Consensus 212 v~e~l~~lq~~fgg 225 (321)
T 3lkz_A 212 VIEKMELLQRRYGG 225 (321)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCC
Confidence 4 4444445544
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.9e-06 Score=75.54 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=89.9
Q ss_pred CCCCCCeEEeecC------CCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhh
Q psy15212 129 DIRSGMYVLDACS------APGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 129 ~~~~g~~VLDlca------g~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
.+..|++|||+|| +||+ ..+.+..+ +.|+++|+.+--. ....++.+|.....
T Consensus 106 ~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~~~IqGD~~~~~------- 165 (344)
T 3r24_A 106 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DADSTLIGDCATVH------- 165 (344)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSSEEEESCGGGEE-------
T ss_pred eecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCCeEEEccccccc-------
Confidence 3667999999997 9999 34455555 4999999966331 11245889976543
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
...+||+||.|.-...+|... .+.++ ...+ -...|+-|.+.|+|||.++. -++.
T Consensus 166 ------------~~~k~DLVISDMAPNtTG~~D-~d~~R----s~~L------~ElALdfA~~~LkpGGsFvV---KVFQ 219 (344)
T 3r24_A 166 ------------TANKWDLIISDMYDPRTKHVT-KENDS----KEGF------FTYLCGFIKQKLALGGSIAV---KITE 219 (344)
T ss_dssp ------------ESSCEEEEEECCCCTTSCSSC-SCCCC----CCTH------HHHHHHHHHHHEEEEEEEEE---EECS
T ss_pred ------------cCCCCCEEEecCCCCcCCccc-cchhH----HHHH------HHHHHHHHHHhCcCCCEEEE---EEec
Confidence 347899999999988888721 11111 1112 22357778889999999985 3444
Q ss_pred cccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 281 EESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 281 ~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
.+.++.+..+.+ .|..+.. +|...+....+-|.+++=.|
T Consensus 220 Gsg~~~L~~lrk---~F~~VK~----fK~ASRa~SsEvYLVG~gfK 258 (344)
T 3r24_A 220 HSWNADLYKLMG---HFSWWTA----FVTNVNASSSEAFLIGANYL 258 (344)
T ss_dssp SSCCHHHHHHHT---TEEEEEE----EEEGGGTTSSCEEEEEEEEC
T ss_pred CCCHHHHHHHHh---hCCeEEE----ECCCCCCCCeeEEEEeeecc
Confidence 444455555554 3443321 12122235667777776544
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=8.6e-06 Score=76.58 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=73.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.++.+|||+|||+|..+..+++..+ .+++++|+ +..++.+++ . -.++++.+|+.. +
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~d~~~-~---------------- 248 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N-ENLNFVGGDMFK-S---------------- 248 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C-SSEEEEECCTTT-C----------------
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C-CCcEEEeCccCC-C----------------
Confidence 4568999999999999999999876 69999999 677765543 1 128888999876 3
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCC---CCEEEEEcCCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP---GGKLLFVTCSL 278 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkp---gG~lvysTCS~ 278 (329)
.+ .||+|++-- ++. .+...+ ..++|+++.+.|+| ||+|+......
T Consensus 249 --~~--~~D~v~~~~------vlh-------~~~d~~-------~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 249 --IP--SADAVLLKW------VLH-------DWNDEQ-------SLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp --CC--CCSEEEEES------CGG-------GSCHHH-------HHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred --CC--CceEEEEcc------ccc-------CCCHHH-------HHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 12 499999632 111 112111 24689999999999 99998876543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.3e-05 Score=73.41 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=62.0
Q ss_pred CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccC
Q psy15212 134 MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYK 213 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
.+|+|+|||.||.++.+.+..-..|+|+|+++..++..+.|.. ...++.+|+.++....+.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~----------~~~~ 68 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP----RSLHVQEDVSLLNAEIIKG----------FFKN 68 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT----TSEEECCCGGGCCHHHHHH----------HHCS
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC----CCceEecChhhcCHHHHHh----------hccc
Confidence 4799999999999999887533467899999999999988853 2567888988764211100 0012
Q ss_pred CCCCCEEEEccCCccccccccC
Q psy15212 214 NKYFDRILADLPCTGSGVVRRN 235 (329)
Q Consensus 214 ~~~fD~Vl~D~PCsg~G~~~~~ 235 (329)
...+|+|+.+|||.+.....+.
T Consensus 69 ~~~~D~i~ggpPCQ~fS~ag~~ 90 (376)
T 3g7u_A 69 DMPIDGIIGGPPCQGFSSIGKG 90 (376)
T ss_dssp CCCCCEEEECCCCCTTC-----
T ss_pred CCCeeEEEecCCCCCcccccCC
Confidence 3579999999999888776543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-05 Score=80.78 Aligned_cols=124 Identities=16% Similarity=0.028 Sum_probs=81.3
Q ss_pred CCeEEeecCCCchHHHH---HHHhC-----------CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 133 GMYVLDACSAPGGKTCH---LLEIA-----------DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~---la~~~-----------~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
+..|||+|||+|-.+.. +++.. ..+|+|||.++.....++.... +|.. |+++.+|++++.++.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 34799999999999643 33211 1499999999988877666654 5664 899999999876210
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ....+++|+|+...- |.+. . -++.-++|..+-++|||||.++=+.|
T Consensus 489 -~------------~~~~ekVDIIVSElm----Gsfl----------~------nEL~pe~Ld~v~r~Lkp~Gi~iP~~~ 535 (745)
T 3ua3_A 489 -K------------DRGFEQPDIIVSELL----GSFG----------D------NELSPECLDGVTGFLKPTTISIPQKY 535 (745)
T ss_dssp -H------------HTTCCCCSEEEECCC----BTTB----------G------GGSHHHHHHTTGGGSCTTCEEESCEE
T ss_pred -c------------cCCCCcccEEEEecc----cccc----------c------hhccHHHHHHHHHhCCCCcEEECCcc
Confidence 0 001478999996543 2110 0 01234577878899999999986655
Q ss_pred CC--CccccHHHHHHH
Q psy15212 277 SL--WFEESEEQAIIF 290 (329)
Q Consensus 277 S~--~~~Ene~vv~~~ 290 (329)
++ .|-+....-+..
T Consensus 536 t~ylaPi~~~~l~~~v 551 (745)
T 3ua3_A 536 TSYVKPIMSTHIHQTI 551 (745)
T ss_dssp EEEEEEEECHHHHHHH
T ss_pred EEEEEEecCHHHHHHH
Confidence 53 355665544433
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-05 Score=75.52 Aligned_cols=82 Identities=26% Similarity=0.339 Sum_probs=56.6
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
.+|+|++||.||.++.+.+... ..|+++|+++..++..+.|... ..++.+|+.++....
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~----~~~~~~Di~~~~~~~--------------- 63 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH----TQLLAKTIEGITLEE--------------- 63 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECSCGGGCCHHH---------------
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc----cccccCCHHHccHhH---------------
Confidence 4799999999999999987642 3799999999999999999753 346778888764110
Q ss_pred cCCCCCCEEEEccCCcccccccc
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
+....+|+|+.+|||.+..+..+
T Consensus 64 ~~~~~~D~l~~gpPCq~fS~ag~ 86 (343)
T 1g55_A 64 FDRLSFDMILMSPPCQPFTRIGR 86 (343)
T ss_dssp HHHHCCSEEEECCC---------
T ss_pred cCcCCcCEEEEcCCCcchhhcCC
Confidence 11126999999999988777644
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=4.7e-05 Score=71.05 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=61.3
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+-+|+|+|||.||.++.+.+..-..|+++|+++..++..+.|..... .+|+.++.. .
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~------~~Di~~~~~----------------~- 67 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP------EGDITQVNE----------------K- 67 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC------BSCGGGSCG----------------G-
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC------cCCHHHcCH----------------h-
Confidence 46899999999999999886432578999999999999999975321 578777541 0
Q ss_pred CCCCCCEEEEccCCcccccccc
Q psy15212 213 KNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.-..+|+|+.+|||.+....++
T Consensus 68 ~~~~~D~l~~gpPCQ~fS~ag~ 89 (327)
T 2c7p_A 68 TIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp GSCCCSEEEEECCCTTTCTTSC
T ss_pred hCCCCCEEEECCCCCCcchhcc
Confidence 1135999999999988777654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00015 Score=66.53 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=46.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCcc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDIS 190 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~ 190 (329)
.+|+.|||+|||+|..+..++. .+.+++++|+++..++.+++++++..-. ...+.+|+.
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~-~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~~ 293 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAAR-WGRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGAT 293 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC--
T ss_pred CCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCccc
Confidence 6799999999999999888776 4569999999999999999999876433 223344443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.9e-05 Score=60.74 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=64.8
Q ss_pred CCCCCeEEeecCCCc-hHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPG-GKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G-~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..++.+|||+|||+| ..+..|++..+..|+|+|+++..+. ++..|+.++.. .+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~--------------~v~dDiF~P~~-~~----------- 86 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG--------------IVRDDITSPRM-EI----------- 86 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT--------------EECCCSSSCCH-HH-----------
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc--------------eEEccCCCCcc-cc-----------
Confidence 345679999999999 5889998766778999999998876 77888887541 00
Q ss_pred ccccCCCCCCEE-EEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRI-LADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~V-l~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.+.||+| ...||- | +|..|++-|-+. |.-+++-+-
T Consensus 87 -----Y~~~DLIYsirPP~----------E---------------l~~~i~~lA~~v---~adliI~pL 122 (153)
T 2k4m_A 87 -----YRGAALIYSIRPPA----------E---------------IHSSLMRVADAV---GARLIIKPL 122 (153)
T ss_dssp -----HTTEEEEEEESCCT----------T---------------THHHHHHHHHHH---TCEEEEECB
T ss_pred -----cCCcCEEEEcCCCH----------H---------------HHHHHHHHHHHc---CCCEEEEcC
Confidence 1479999 888881 1 466677766554 566666543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00085 Score=61.55 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CE--EEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IK--LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~--v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+-+|+|+|||.||.++.+.+. | .. |+++|+++..++..+.|.. ...++.+|..++....+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~----~~~~~~~DI~~i~~~~i---------- 78 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ----GKIMYVGDVRSVTQKHI---------- 78 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT----TCEEEECCGGGCCHHHH----------
T ss_pred CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC----CCceeCCChHHccHHHh----------
Confidence 34568999999999999888764 4 33 7999999999998888753 23577889887651111
Q ss_pred cccccCCCCCCEEEEccCCccccccc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
.....+|+|+..|||.+....+
T Consensus 79 ----~~~~~~Dll~ggpPCQ~fS~ag 100 (295)
T 2qrv_A 79 ----QEWGPFDLVIGGSPCNDLSIVN 100 (295)
T ss_dssp ----HHTCCCSEEEECCCCGGGBTTC
T ss_pred ----cccCCcCEEEecCCCccccccC
Confidence 0114699999999998877664
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00034 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=41.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
..+|+.|||.+||+|..+..+++ ++.+++++|+++..++.+++|++..++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~-~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCEEEECCCCCCHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 36899999999999988877765 466999999999999999999987664
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0007 Score=62.62 Aligned_cols=78 Identities=23% Similarity=0.208 Sum_probs=61.5
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
.+|||++||.||.++-+-+ .| -.|.|+|+++..++..+.|. ...++.+|.+++...
T Consensus 1 mkvidLFsG~GG~~~G~~~-aG~~~v~a~e~d~~a~~ty~~N~-----~~~~~~~DI~~i~~~----------------- 57 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNH-----SAKLIKGDISKISSD----------------- 57 (331)
T ss_dssp CEEEEESCTTCHHHHHHHH-TTCEEEEEEECCTTTHHHHHHHC-----CSEEEESCGGGCCGG-----------------
T ss_pred CeEEEeCcCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHC-----CCCcccCChhhCCHh-----------------
Confidence 3799999999999988765 45 47789999999999988885 246788998876510
Q ss_pred CCCCCCEEEEccCCcccccccc
Q psy15212 213 KNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.-..+|+|+.-|||.+..+..+
T Consensus 58 ~~~~~D~l~ggpPCQ~fS~ag~ 79 (331)
T 3ubt_Y 58 EFPKCDGIIGGPPSQSWSEGGS 79 (331)
T ss_dssp GSCCCSEEECCCCGGGTEETTE
T ss_pred hCCcccEEEecCCCCCcCCCCC
Confidence 1146999999999988777654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00063 Score=63.33 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=60.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC-C-CEE-EEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA-D-IKL-ISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~-~-~~v-~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.-+|+|+|||.||.+..+.+.. + ..| .|+|+++..++..+.|.... ++.+|..++....
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-----~~~~DI~~~~~~~------------- 71 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-----VQVKNLDSISIKQ------------- 71 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-----CBCCCTTTCCHHH-------------
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-----cccCChhhcCHHH-------------
Confidence 3489999999999999887653 1 356 79999999999999997432 5567887765111
Q ss_pred cccCCCCCCEEEEccCCccc--ccccc
Q psy15212 210 RFYKNKYFDRILADLPCTGS--GVVRR 234 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~--G~~~~ 234 (329)
+....+|+|+..|||.+. ....+
T Consensus 72 --i~~~~~Dil~ggpPCQ~fs~S~ag~ 96 (327)
T 3qv2_A 72 --IESLNCNTWFMSPPCQPYNNSIMSK 96 (327)
T ss_dssp --HHHTCCCEEEECCCCTTCSHHHHTT
T ss_pred --hccCCCCEEEecCCccCcccccCCC
Confidence 112369999999999987 54443
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00095 Score=62.28 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=61.3
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
-+++|+|||.||.+..+.+..- ..|.|+|+++..++..+.|... ..++..|..++....
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~----~~~~~~DI~~~~~~~--------------- 64 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE----TNLLNRNIQQLTPQV--------------- 64 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT----SCEECCCGGGCCHHH---------------
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC----CceeccccccCCHHH---------------
Confidence 3799999999999998876532 3688999999999998888643 346678887764111
Q ss_pred cCCCCCCEEEEccCCcccccccc
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.....+|+++..|||.+.....+
T Consensus 65 ~~~~~~D~l~ggpPCQ~fS~ag~ 87 (333)
T 4h0n_A 65 IKKWNVDTILMSPPCQPFTRNGK 87 (333)
T ss_dssp HHHTTCCEEEECCCCCCSEETTE
T ss_pred hccCCCCEEEecCCCcchhhhhh
Confidence 11236999999999987766544
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0019 Score=59.32 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=78.6
Q ss_pred CeEEeecCCCchHHHHHHH----hCC-C--EEEEEeCCh--------hHHHHHHH-HHHHc----C--CceEEEecCccc
Q psy15212 134 MYVLDACSAPGGKTCHLLE----IAD-I--KLISVDNNL--------SRLNMISE-NLKRL----N--LKATLILSDISK 191 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~----~~~-~--~v~avD~~~--------~rl~~l~~-n~~~~----g--~~v~~~~~D~~~ 191 (329)
-+|||+|-|+|-..+...+ ..+ . +.+++|..+ .-+..+.+ .+.+. + +..++..+|+..
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 4799999999987654432 122 3 567787532 11222222 22332 1 124677888876
Q ss_pred cchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.- ..+....||.|++|+= | -.++|++ |. .++++..+++++|||++
T Consensus 178 ~l----------------~~l~~~~~Da~flDgF-s----P~kNPeL-Ws-------------~e~f~~l~~~~~pgg~l 222 (308)
T 3vyw_A 178 RI----------------KEVENFKADAVFHDAF-S----PYKNPEL-WT-------------LDFLSLIKERIDEKGYW 222 (308)
T ss_dssp HG----------------GGCCSCCEEEEEECCS-C----TTTSGGG-GS-------------HHHHHHHHTTEEEEEEE
T ss_pred HH----------------hhhcccceeEEEeCCC-C----cccCccc-CC-------------HHHHHHHHHHhCCCcEE
Confidence 42 1123457999999972 1 1467774 32 46899999999999998
Q ss_pred EEEcCCCCccccHHHHHHHHhhCCCcEEecC
Q psy15212 272 LFVTCSLWFEESEEQAIIFSKNHKDSIRLNS 302 (329)
Q Consensus 272 vysTCS~~~~Ene~vv~~~l~~~~~~~~~~~ 302 (329)
+--||+ ..|..-|+.. +|.+...
T Consensus 223 aTYtaa-------g~VRR~L~~a-GF~V~k~ 245 (308)
T 3vyw_A 223 VSYSSS-------LSVRKSLLTL-GFKVGSS 245 (308)
T ss_dssp EESCCC-------HHHHHHHHHT-TCEEEEE
T ss_pred EEEeCc-------HHHHHHHHHC-CCEEEec
Confidence 855554 6788888876 6765543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=58.87 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+++|++||-.|||+ |..+.++|+..+.+|+++|.++++++.++ ++|....+ .|...+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lGa~~v~--~~~~~~--------------- 231 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL----SMGVKHFY--TDPKQC--------------- 231 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH----HTTCSEEE--SSGGGC---------------
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH----hcCCCeec--CCHHHH---------------
Confidence 678999999999866 66777788878889999999999988764 46765322 332221
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
. +.+|+|+- |+|.. ..+..+++.|++||+++..
T Consensus 232 -----~-~~~D~vid---~~g~~-------------------------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 232 -----K-EELDFIIS---TIPTH-------------------------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp -----C-SCEEEEEE---CCCSC-------------------------CCHHHHHTTEEEEEEEEEC
T ss_pred -----h-cCCCEEEE---CCCcH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 1 27999873 33321 1266788899999998864
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0016 Score=61.19 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=59.7
Q ss_pred ceEEEechh-HHHHhhhcCCC------CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceE
Q psy15212 112 GFCSIQDAA-AQLAAPLLDIR------SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKAT 183 (329)
Q Consensus 112 G~~~~Qd~~-s~l~~~~l~~~------~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~ 183 (329)
|+=++.|+. ..-++..+++. +++.|||+|.|+|..|..|++... .+|+|+|+++..+..+++.+ . .-+++
T Consensus 31 GQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-~~~l~ 108 (353)
T 1i4w_A 31 GFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-GSPLQ 108 (353)
T ss_dssp GCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-TSSCE
T ss_pred CcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-CCCEE
Confidence 544444544 23334444555 368999999999999999998643 69999999999999998877 2 22489
Q ss_pred EEecCccccc
Q psy15212 184 LILSDISKIN 193 (329)
Q Consensus 184 ~~~~D~~~~~ 193 (329)
++.+|+.+++
T Consensus 109 ii~~D~l~~~ 118 (353)
T 1i4w_A 109 ILKRDPYDWS 118 (353)
T ss_dssp EECSCTTCHH
T ss_pred EEECCccchh
Confidence 9999997654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0013 Score=60.94 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=41.7
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||-.|||+ |..++++|+..+.+|+++|.++++++.++ ++|..
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lGa~ 212 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR----RLGAE 212 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH----HcCCC
Confidence 3578999999999876 78888888888899999999999988654 46765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0077 Score=56.15 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=40.6
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|||+ |..+.++|+..+. +|+++|.++++++.++ ++|..
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~ 218 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGAD 218 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC
Confidence 4688999999999875 6677788887886 9999999999988764 46765
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.01 Score=55.13 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=40.1
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|||+ |..+.++|+..+.+|+++|.++++++.++ .+|..
T Consensus 164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lGa~ 214 (352)
T 1e3j_A 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK----NCGAD 214 (352)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH----HhCCC
Confidence 4688999999999765 66677777777778999999999988764 46765
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0022 Score=60.32 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=40.8
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||-.|||+ |..++++|+..+. +|+++|.++++++.+++ +|..
T Consensus 177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~ 229 (370)
T 4ej6_A 177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT 229 (370)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC
Confidence 34688999999999866 6677778887885 99999999999886654 6765
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0016 Score=59.48 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=46.7
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
++++++|+.+.. ..+.+++||+|++|||+.........+... ....+.........++++.+
T Consensus 22 ~~i~~gD~~~~l----------------~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~--~~~~~~~~~l~~l~~~~~~~ 83 (297)
T 2zig_A 22 HRLHVGDAREVL----------------ASFPEASVHLVVTSPPYWTLKRYEDTPGQL--GHIEDYEAFLDELDRVWREV 83 (297)
T ss_dssp EEEEESCHHHHH----------------TTSCTTCEEEEEECCCCCCCC-------CC--HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcHHHHH----------------hhCCCCceeEEEECCCCCCccccCCChhhh--cccccHHHHHHHHHHHHHHH
Confidence 678999988742 123457899999999996432221111100 00111222333456788999
Q ss_pred HhcCCCCCEEEEEcC
Q psy15212 262 WKMLKPGGKLLFVTC 276 (329)
Q Consensus 262 ~~~LkpgG~lvysTC 276 (329)
.++|||||.+++...
T Consensus 84 ~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 84 FRLLVPGGRLVIVVG 98 (297)
T ss_dssp HHHEEEEEEEEEEEC
T ss_pred HHHcCCCcEEEEEEC
Confidence 999999999987644
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=55.25 Aligned_cols=127 Identities=16% Similarity=0.085 Sum_probs=71.3
Q ss_pred CCeEEeecCCCchHHHHHHHh-------------C----C-CEEEEEeCChhHHHHHHHH-------H-HHcCC--ceEE
Q psy15212 133 GMYVLDACSAPGGKTCHLLEI-------------A----D-IKLISVDNNLSRLNMISEN-------L-KRLNL--KATL 184 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~-------------~----~-~~v~avD~~~~rl~~l~~n-------~-~~~g~--~v~~ 184 (329)
.-+|+|+|||+|..|+.+... . + ..|+.+|+-..=...+=.. + +..|- ...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999999988765 1 2 4788888863322222111 1 12232 2345
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCc-------ccC--------ChhHH--
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP-------WLR--------RKNDI-- 247 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~-------~~~--------~~~~~-- 247 (329)
+.+....+- . ..++.++||.|....- .-=+.+.|+.. |.+ ++..+
T Consensus 133 ~~gvpgSFy-------------~--rlfp~~S~d~v~Ss~a---LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ 194 (384)
T 2efj_A 133 IGAMPGSFY-------------S--RLFPEESMHFLHSCYC---LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQK 194 (384)
T ss_dssp EEECCSCTT-------------S--CCSCTTCEEEEEEESC---TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHH
T ss_pred EEecchhhh-------------h--ccCCCCceEEEEecce---eeecCCCchhhhccccccccCCceEecCCCCHHHHH
Confidence 555554432 0 1246789999986432 11122233210 111 12222
Q ss_pred ---HHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 248 ---KKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 248 ---~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.+..+--..+|+.-++-|+|||+||.++..
T Consensus 195 ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 195 AYLDQFTKDFTTFLRIHSEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 233334456788889999999999998754
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0028 Score=61.94 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh-hhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY-IDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~-~~~~~~~~~~~~ 210 (329)
.-+++|+|||.||.++.+-+ .| ..|+|+|+++..++..+.|.... -...++.+|+.++...... +..... -..+.
T Consensus 88 ~~~viDLFaG~GGlslG~~~-aG~~~v~avE~d~~A~~ty~~N~~~~-p~~~~~~~DI~~i~~~~~~~~~~~~~-~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFES-IGGQCVFTSEWNKHAVRTYKANHYCD-PATHHFNEDIRDITLSHQEGVSDEAA-AEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHT-TTEEEEEEECCCHHHHHHHHHHSCCC-TTTCEEESCTHHHHCTTCTTSCHHHH-HHHHH
T ss_pred cceEEEecCCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhcccC-CCcceeccchhhhhhccccccchhhH-Hhhhh
Confidence 45899999999999988875 34 46899999999999888886211 1245677888765410000 000000 00000
Q ss_pred ccCCCCCCEEEEccCCcccccccc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
.....+|+|+.-|||.+..+.++
T Consensus 165 -~~~~~~Dvl~gGpPCQ~FS~AG~ 187 (482)
T 3me5_A 165 -QHIPEHDVLLAGFPCQPFSLAGV 187 (482)
T ss_dssp -HHSCCCSEEEEECCCCCC-----
T ss_pred -hcCCCCCEEEecCCCcchhhhCc
Confidence 01146899999999987766643
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.01 Score=56.17 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 252 KYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 252 ~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+-...+|+.-++-|+|||+||.++..
T Consensus 202 ~D~~~fL~~ra~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 202 ADLAEFLRARAAEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 33456899999999999999998753
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0019 Score=61.37 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
++++|++||-.|||+ |..++++|+..+. +|+++|.++++++.++ ++|.
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa 231 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS----DAGF 231 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----TTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCC
Confidence 578999999999877 7778888887775 9999999999987654 4676
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0032 Score=59.12 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=40.5
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++++|++||-.|||+ |..+.++|+..+. +|+++|.++++++.++ ++|..
T Consensus 185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~ 237 (371)
T 1f8f_A 185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK----QLGAT 237 (371)
T ss_dssp TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH----HHTCS
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCC
Confidence 34688999999999876 6677788877775 8999999999988765 35654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0096 Score=55.93 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=40.3
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++|++||-.|+|+ |..++++|+..+.+|+++|.++++++.+++ +|..
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~ 240 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD 240 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc
Confidence 678999999999875 667778888788899999999999987654 5654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0037 Score=59.28 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=40.3
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++++|++||-.|||+ |..++++|+.+++ +|+++|.++++++.++ ++|..
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~----~lGa~ 232 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQGFE 232 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 578999999999866 6777888888885 8999999999988764 46764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0083 Score=57.38 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=48.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHH-HhCC--CEEEEEeCChhHHHHHHHHHHH---cCC-c-eEEEec
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLL-EIAD--IKLISVDNNLSRLNMISENLKR---LNL-K-ATLILS 187 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la-~~~~--~~v~avD~~~~rl~~l~~n~~~---~g~-~-v~~~~~ 187 (329)
.+.+|+.|+|+||+.|..+..++ ...+ ++|+|+|.++...+.+++|++. .+. . ++++..
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~ 289 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 289 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence 45789999999999999999988 4554 6999999999999999999998 234 3 555543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0091 Score=56.14 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=73.9
Q ss_pred CeEEeecCCCchHHHHHHHh----------------CC-CEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccch
Q psy15212 134 MYVLDACSAPGGKTCHLLEI----------------AD-IKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINL 194 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~----------------~~-~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~ 194 (329)
-+|+|+||++|..|+.+... .+ ..|+.+|+...-...+-+++....- ...++.+....+-
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy- 131 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY- 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS-
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh-
Confidence 57999999999988876654 11 5788888888877777766643210 1234444433321
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCC--------cccC-Ch-----hHHHHHHHHHHHHHHH
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI--------PWLR-RK-----NDIKKLSKYSCKILNN 260 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~--------~~~~-~~-----~~~~~l~~~q~~lL~~ 260 (329)
. ..++.+++|.|..... .-=+.+.|+. .... ++ .-..+..+--..+|+.
T Consensus 132 ------------~--rlfp~~S~d~v~Ss~a---LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~ 194 (359)
T 1m6e_X 132 ------------G--RLFPRNTLHFIHSSYS---LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRC 194 (359)
T ss_dssp ------------S--CCSCTTCBSCEEEESC---TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHH
T ss_pred ------------h--ccCCCCceEEEEehhh---hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1246788999976322 1111112211 0000 00 1234555555678999
Q ss_pred HHhcCCCCCEEEEEcC
Q psy15212 261 LWKMLKPGGKLLFVTC 276 (329)
Q Consensus 261 a~~~LkpgG~lvysTC 276 (329)
-++-|+|||+||.++.
T Consensus 195 Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 195 RAQEVVPGGRMVLTIL 210 (359)
T ss_dssp HHHHBCTTCEEEEEEE
T ss_pred HHHHhcCCceEEEEEe
Confidence 9999999999999864
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0096 Score=55.38 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
..+++|++||=.|||+ |..++++|+..+. +|+++|.++++++.+++ +|... ++..+-.++. ..+.
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~-~~v~------- 228 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGATD-IINYKNGDIV-EQIL------- 228 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCCE-EECGGGSCHH-HHHH-------
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCce-EEcCCCcCHH-HHHH-------
Confidence 4578999999998876 6677778887775 89999999999877654 56542 2221111111 0000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+..+|+|+ | |+|.. ..+..+++.|++||+++..
T Consensus 229 ----~~t~g~g~D~v~-d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 229 ----KATDGKGVDKVV-I--AGGDV-------------------------HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp ----HHTTTCCEEEEE-E--CSSCT-------------------------THHHHHHHHEEEEEEEEEC
T ss_pred ----HHcCCCCCCEEE-E--CCCCh-------------------------HHHHHHHHHHhcCCEEEEe
Confidence 111234799997 3 33321 2477788899999998854
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.019 Score=53.84 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=39.8
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|+|+ |..++++|+..+. +|+++|.++++++.++ ++|..
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~ 239 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT 239 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4578999999998765 6667777877786 8999999999998764 46764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.029 Score=52.28 Aligned_cols=47 Identities=28% Similarity=0.222 Sum_probs=38.8
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCE-EEEEeCChhHHHHHHHH
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIK-LISVDNNLSRLNMISEN 174 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~-v~avD~~~~rl~~l~~n 174 (329)
..+++|++||=.|||+ |..++++|+..+.+ |+++|.++++++.+++.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 3688999999998865 66777788877765 99999999999988764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.00095 Score=61.93 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=50.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
..+|+.|||.+||+|..+..+. .++.+.+++|+++..++.+++++++.+.....+..|+.++.
T Consensus 250 ~~~~~~VlDpF~GsGtt~~aa~-~~gr~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i~ 312 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRIL 312 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4689999999999998666555 45679999999999999999999888766555556665543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.19 E-value=0.022 Score=53.32 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=39.7
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|||+ |..++++|+.++. +|+++|.++++++.++ ++|..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~ 238 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGAT 238 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc
Confidence 4578999999999765 6667777877776 8999999999988764 46764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.021 Score=53.33 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=40.2
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|+|+ |..++++|+..+.+|+++|.++++++.++ ++|..
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----~lGa~ 235 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAF----ALGAD 235 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH----HcCCC
Confidence 3578999999999776 66777778777889999999999988754 46765
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.02 Score=53.59 Aligned_cols=50 Identities=12% Similarity=0.046 Sum_probs=39.2
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|||+ |..++++|+..+. +|+++|.++++++.++ ++|..
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~ 238 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT 238 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc
Confidence 4578999999999765 5566677777775 8999999999988764 46765
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0067 Score=56.14 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=48.6
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
+.++++|+...- ..+.+++||+|++|||+..... ..|. ......+.....+.|..+
T Consensus 15 ~~ii~gD~~~~l----------------~~l~~~svDlI~tDPPY~~~~~------~~y~--~~~~~~~~~~l~~~l~~~ 70 (323)
T 1boo_A 15 GSMYIGDSLELL----------------ESFPEESISLVMTSPPFALQRK------KEYG--NLEQHEYVDWFLSFAKVV 70 (323)
T ss_dssp EEEEESCHHHHG----------------GGSCSSCEEEEEECCCCSSSCS------CSSC--SCHHHHHHHHHHHHHHHH
T ss_pred ceEEeCcHHHHH----------------hhCCCCCeeEEEECCCCCCCcc------cccC--CcCHHHHHHHHHHHHHHH
Confidence 578889987642 1234678999999999963311 0121 123345555667889999
Q ss_pred HhcCCCCCEEEEEcCC
Q psy15212 262 WKMLKPGGKLLFVTCS 277 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS 277 (329)
.++|+|||.+++....
T Consensus 71 ~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 71 NKKLKPDGSFVVDFGG 86 (323)
T ss_dssp HHHEEEEEEEEEEECC
T ss_pred HHHCcCCcEEEEEECC
Confidence 9999999999887543
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.033 Score=53.17 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=36.7
Q ss_pred CeEEeecCCCchHHHHHHHhCC--CE----EEEEeCChhHHHHHHHHHHH
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD--IK----LISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~--~~----v~avD~~~~rl~~l~~n~~~ 177 (329)
-+|+|+|||.||.+..+-+... .. |.++|+++..++..+.|...
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 4899999999999988876532 24 89999999999999988754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.024 Score=53.05 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=38.8
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|+|+ |..++++|+..+. +|+++|.++++++.++ ++|..
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~ 237 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----EFGAT 237 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HHTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 4578999999998755 5566677776775 8999999999988765 45764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.01 Score=55.80 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=39.3
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||=.|||+ |..++++|+..+. +|+++|.++++++.++ ++|..
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~ 240 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVN 240 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCc
Confidence 4678999999998864 6666777777775 8999999999988654 56765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.028 Score=52.68 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=39.5
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|||+ |..++++|+.++. +|+++|.++++++.++ ++|..
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~ 242 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGAT 242 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc
Confidence 4578999999999764 5666777777786 8999999999988764 46764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0087 Score=55.49 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=39.0
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhC--CCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIA--DIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~--~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++ +|++||-.|+|+ |..+.++|+.. +.+|+++|.++++++.+++ +|..
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~ 218 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD 218 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC
Confidence 67 899999999865 66777888877 7899999999999887654 5654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.012 Score=54.91 Aligned_cols=50 Identities=6% Similarity=-0.057 Sum_probs=39.0
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|+|+ |..+.++|+..+.+|+++|.++++++.+++ +|..
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~----lGa~ 225 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD 225 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cCCC
Confidence 3678999999999854 556666777667799999999999887654 5654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0043 Score=55.51 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=45.6
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
.+++++|+...- ....+++||+|++|||+..... .|. ..............+|+.+
T Consensus 5 ~~l~~gD~~~~l----------------~~l~~~~vdlI~~DPPY~~~~~-------~~d-~~~~~~~y~~~~~~~l~~~ 60 (260)
T 1g60_A 5 NKIHQMNCFDFL----------------DQVENKSVQLAVIDPPYNLSKA-------DWD-SFDSHNEFLAFTYRWIDKV 60 (260)
T ss_dssp SSEEECCHHHHH----------------HHSCTTCEEEEEECCCCSSCSS-------GGG-CCSSHHHHHHHHHHHHHHH
T ss_pred CeEEechHHHHH----------------HhccccccCEEEECCCCCCCcc-------ccc-ccCCHHHHHHHHHHHHHHH
Confidence 457788876542 1134568999999999853210 010 0002334444556788888
Q ss_pred HhcCCCCCEEEEEcCC
Q psy15212 262 WKMLKPGGKLLFVTCS 277 (329)
Q Consensus 262 ~~~LkpgG~lvysTCS 277 (329)
.++|++||.++...|.
T Consensus 61 ~~~Lk~~g~i~v~~~d 76 (260)
T 1g60_A 61 LDKLDKDGSLYIFNTP 76 (260)
T ss_dssp HHHEEEEEEEEEEECH
T ss_pred HHHhcCCeEEEEEcCc
Confidence 9999999998877543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.02 Score=52.87 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=41.4
Q ss_pred hcCCCCCCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||-.||| .|..+.++|+..+.+|+++|.++++++.+++ +|..
T Consensus 139 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lga~ 191 (340)
T 3gms_A 139 TLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR----LGAA 191 (340)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS
T ss_pred hcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----CCCc
Confidence 3468899999999886 5777778887777899999999999887765 5654
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.027 Score=52.04 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhC-CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIA-DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~-~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+++|++||-.|||+ |..++++|+.. +.+|+++|.++++++.++ ++|.... +..+. +.. ..+.
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~----~lGa~~~-i~~~~-~~~-~~v~-------- 232 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR----EVGADAA-VKSGA-GAA-DAIR-------- 232 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH----HTTCSEE-EECST-THH-HHHH--------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCCEE-EcCCC-cHH-HHHH--------
Confidence 578999999999866 66777788776 479999999999988764 4676522 22111 111 0000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.......+|+|+- |+|. ...+..+++.|++||+++..
T Consensus 233 ---~~t~g~g~d~v~d---~~G~-------------------------~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 233 ---ELTGGQGATAVFD---FVGA-------------------------QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp ---HHHGGGCEEEEEE---SSCC-------------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred ---HHhCCCCCeEEEE---CCCC-------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 0012347999873 3322 12577888999999998864
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.011 Score=54.71 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=39.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCCh---hHHHHHHHHHHHcC
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNL---SRLNMISENLKRLN 179 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~---~rl~~l~~n~~~~g 179 (329)
..+|+.|||.+||+|..+..+.++ +.+.+++|+++ ..++.+++++++.|
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 468999999999999877766654 56999999999 99999999988765
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.027 Score=52.97 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=39.2
Q ss_pred cC-CCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LD-IRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~-~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++ +++|++||-.|+|+ |..++++|+..+ .+|+++|.++++++.++ ++|..
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~ 242 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD 242 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCc
Confidence 36 78999999999654 556677777778 59999999999988765 46764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.015 Score=53.01 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=39.1
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||=.|||+ |..+.++|+..+.+|++++ ++++++.+++ +|..
T Consensus 137 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~----lGa~ 187 (315)
T 3goh_A 137 KIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK----RGVR 187 (315)
T ss_dssp TSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH----HTEE
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH----cCCC
Confidence 34578999999999854 6667777777778999999 9999887654 6754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.021 Score=48.21 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=32.3
Q ss_pred cCCCCCCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
.++++|++||..|++ -|..+.+++...+.+|+++|.++++++.++
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS 80 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 467899999999853 344444555545679999999998876654
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.03 Score=51.69 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCCCCCeEEeecCCCc-hHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAPG-GKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G-~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++|++||=.|||++ +.+.+++...+ .+|+++|.++++++.+ +++|..
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~----~~~Ga~ 210 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA----KKIGAD 210 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH----HHTTCS
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhh----hhcCCe
Confidence 5889999999999875 45555665554 7999999999987654 456665
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.025 Score=57.55 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC----------C---CEEEEEeCChhHHHHHHH--------------HHHHc-----C
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA----------D---IKLISVDNNLSRLNMISE--------------NLKRL-----N 179 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~----------~---~~v~avD~~~~rl~~l~~--------------n~~~~-----g 179 (329)
+.-+|+|+|-|+|...+.+.+.. . .+++++|..+-..+.+++ .++.+ |
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34589999999999888876642 1 479999996644444443 22222 1
Q ss_pred ----------CceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH
Q psy15212 180 ----------LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249 (329)
Q Consensus 180 ----------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~ 249 (329)
+.+++..+|+...- +.+ .......||.+++|+... .++|++ |.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l-~~~------------~~~~~~~~da~flD~f~p-----~~np~~-w~-------- 190 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLL-PTL------------DDSLNNQVDAWFLDGFAP-----AKNPDM-WN-------- 190 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHG-GGC------------CGGGTTCEEEEEECSSCC-------CCTT-CS--------
T ss_pred ceEEEecCCcEEEEEEccCHHHHH-hhc------------ccccCCceeEEEECCCCC-----CCChhh-hh--------
Confidence 12456777776542 110 000136799999998533 367774 32
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 250 l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
.+++....+++++||++..-+|. ..|+..|...
T Consensus 191 -----~~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~l~~a 223 (689)
T 3pvc_A 191 -----EQLFNAMARMTRPGGTFSTFTAA-------GFVRRGLQQA 223 (689)
T ss_dssp -----HHHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHHT
T ss_pred -----HHHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHhC
Confidence 35777888899999998766665 3455556554
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.048 Score=49.19 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhC
Q psy15212 215 KYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 215 ~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~ 294 (329)
+++|+|++|..-..+|. +| ++=..+...++. +++.|.+.|+|||.+|.-.--......|.++..+.+.+
T Consensus 205 ~k~DvV~SDMApn~sGh-------~y---qQC~DHarii~L-al~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F 273 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYH-------HY---QQCEDHAIKLSM-LTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQF 273 (320)
T ss_dssp CCEEEEEEECCCCCCSC-------HH---HHHHHHHHHHHH-THHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTE
T ss_pred CcCCEEEEcCCCCCCCc-------cc---cccchHHHHHHH-HHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhc
Confidence 67999999976443333 00 100222223333 89999999999999995433333223455555554443
Q ss_pred CCcEEecCCCcccCCCCCCCCCCeEEEEEEEec
Q psy15212 295 KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 295 ~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
..+..+. |...+. .++=||+|.=.|.
T Consensus 274 ~~Vr~vK------P~ASR~-StEvf~La~gf~g 299 (320)
T 2hwk_A 274 KFSRVCK------PKSSLE-ETEVLFVFIGYDR 299 (320)
T ss_dssp EEEEEEC------CTTCCS-TTCEEEEEEEECC
T ss_pred ceeeeeC------CCCccc-cceEEEEEEeecC
Confidence 3333332 433223 7889999976554
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.044 Score=50.51 Aligned_cols=51 Identities=8% Similarity=-0.052 Sum_probs=38.9
Q ss_pred hcCCCCCCeEEeecCCCc-hHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAPG-GKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G-~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||=.|||+. ..+.++|+.++ ..++++|.++++++.++ ++|..
T Consensus 155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~----~lGa~ 207 (346)
T 4a2c_A 155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK----SFGAM 207 (346)
T ss_dssp HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS
T ss_pred HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH----HcCCe
Confidence 345789999999988763 45666777777 57899999999987654 57765
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.046 Score=51.04 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCeEEeec-CC-CchHHHHHHHh-CCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDAC-SA-PGGKTCHLLEI-ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlc-ag-~G~kt~~la~~-~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+|++||=.| +| .|..+.++|+. .+.+|+++|.++++++.++ ++|... ++... ..+. ..+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~----~lGad~-vi~~~-~~~~-~~v----------- 232 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK----SLGAHH-VIDHS-KPLA-AEV----------- 232 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH----HTTCSE-EECTT-SCHH-HHH-----------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH----HcCCCE-EEeCC-CCHH-HHH-----------
Confidence 789999887 33 36777788876 4589999999999988765 467652 22111 1111 000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....+.+|+|+- |+|. ...+..+++.|++||+++..
T Consensus 233 -~~~~~~g~Dvvid---~~g~-------------------------~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 233 -AALGLGAPAFVFS---TTHT-------------------------DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -HTTCSCCEEEEEE---CSCH-------------------------HHHHHHHHHHSCTTCEEEEC
T ss_pred -HHhcCCCceEEEE---CCCc-------------------------hhhHHHHHHHhcCCCEEEEE
Confidence 0113357998873 3432 13577888999999999864
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.017 Score=53.41 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++|++||-.|+|+ |..+.++|+..+.+|+++|.++.+++.++ ++|..
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~lGa~ 210 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK----ELGAD 210 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HCCCC
Confidence 678999999999853 55666777777789999999999988764 46664
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.053 Score=49.73 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=34.1
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHH
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMI 171 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l 171 (329)
.++++|++||-.|| |-|..+.+++...+.+|+++|.++++++.+
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 141 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186 (333)
T ss_dssp SCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred hCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46789999999987 445555556666668999999999888766
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.017 Score=53.23 Aligned_cols=52 Identities=10% Similarity=0.237 Sum_probs=39.3
Q ss_pred hcCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||-.|| |-|..+.+++...+.+|+++|.++++++.+. +++|..
T Consensus 144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~---~~~g~~ 197 (336)
T 4b7c_A 144 VGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV---EELGFD 197 (336)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH---HTTCCS
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHcCCC
Confidence 346889999999987 4466667777777789999999999887652 345654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.042 Score=50.67 Aligned_cols=52 Identities=10% Similarity=0.234 Sum_probs=38.9
Q ss_pred hcCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++++|++||-.|| |-|..+.+++...+.+|+++|.++++++.+++ ++|..
T Consensus 150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~---~~g~~ 203 (345)
T 2j3h_A 150 VCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT---KFGFD 203 (345)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH---TSCCS
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HcCCc
Confidence 346789999999987 45556666776677899999999998876652 34654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.1 Score=47.17 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|..||=.|++ |+.+.++++.+ +.+|+.++.+...++.+.+.+...+..+.++..|.++... +.--.+. ..
T Consensus 30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~--v~~~~~~-~~-- 103 (301)
T 3tjr_A 30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDE--MVRLADE-AF-- 103 (301)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHHHHH-HH--
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHH--HHHHHHH-HH--
Confidence 56788877766 66777777654 3699999999999999999888888788899999987541 1000000 00
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCC---CCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKP---GGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lkp---gG~lvysT 275 (329)
. ..+..|.++.++--...+.+. ..+.++..... .-...+++.+...++. +|++|+.+
T Consensus 104 -~--~~g~id~lvnnAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~is 167 (301)
T 3tjr_A 104 -R--LLGGVDVVFSNAGIVVAGPLA-------QMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTA 167 (301)
T ss_dssp -H--HHSSCSEEEECCCCCCCBCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred -H--hCCCCCEEEECCCcCCCCCcc-------cCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 0 014789999877544333221 12233332221 1223345555544432 67888764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.043 Score=50.78 Aligned_cols=49 Identities=8% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++++|++||-.|+ |.|..+.+++...+.+|+++|.++++++.+++ +|..
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~~ 216 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGGE 216 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTCC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCCc
Confidence 5789999999998 34556666676667899999999988876543 5654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.037 Score=51.22 Aligned_cols=46 Identities=9% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCeEEeec-CC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 132 SGMYVLDAC-SA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 132 ~g~~VLDlc-ag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+|++||=.| +| .|..++++|+..+.+|+++|.++++++.+++ +|..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~ 197 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGAD 197 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc
Confidence 899999873 33 3556667777777899999999999887765 5654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.075 Score=48.80 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=37.6
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++|++||-.|| |-|..+.++++..+.+|+++|.++++++.++ ++|..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~~ga~ 195 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK----EYGAE 195 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCS
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HcCCc
Confidence 5789999999984 3455666677777789999999999988664 35654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.041 Score=50.92 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=36.3
Q ss_pred CCCCCCeEEeecCC--CchHHHHHHHhC-CCEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACSA--PGGKTCHLLEIA-DIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlcag--~G~kt~~la~~~-~~~v~avD~~~~rl~~l~~ 173 (329)
.+++|++||-.|+| .|..+.+++... +.+|+++|.++++++.+++
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 214 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 57899999999987 455666777777 7899999999999887643
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.035 Score=58.76 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=59.4
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
-+++|++||.||.++-+.+..- -.+.|+|+++..++..+.|.. ...++..|...+......-++.......+ .
T Consensus 541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~~di~~~~~~~l--p 614 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP----GSTVFTEDCNILLKLVMAGETTNSRGQRL--P 614 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT----TSEEECSCHHHHHHHHHHTCSBCTTCCBC--C
T ss_pred CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC----CCccccccHHHHhhhccchhhhhhhhhhc--c
Confidence 4799999999999998876432 268899999999998888753 24566677544310000000000000111 1
Q ss_pred CCCCCCEEEEccCCccccccc
Q psy15212 213 KNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
..+.+|+|+.-|||.+....+
T Consensus 615 ~~~~vDll~GGpPCQ~FS~ag 635 (1002)
T 3swr_A 615 QKGDVEMLCGGPPCQGFSGMN 635 (1002)
T ss_dssp CTTTCSEEEECCCCTTCCSSS
T ss_pred cCCCeeEEEEcCCCcchhhhC
Confidence 235799999999998776554
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.075 Score=49.09 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||-.|| |.|..+.++|+..+.+|++++.++++++.+++ +|..
T Consensus 155 ~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~ 206 (342)
T 4eye_A 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS----VGAD 206 (342)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc
Confidence 45789999999886 34667777787778899999999999877664 4654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.065 Score=49.04 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=37.5
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|+ |-|..+.++|+..+.+|+++|.++++++.+++ +|..
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~ 187 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGAW 187 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC
Confidence 35789999998873 34556666676667899999999999887753 5654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.081 Score=48.80 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=37.4
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
++++|++||-.|+ |.|..+.+++...+.+|+++|.++++++.+++
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~ 209 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA 209 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5788999999998 55667777787777899999999999887753
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.036 Score=51.75 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=39.3
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|+ |.|..++++|...+.+|+++|.++++++.+++ +|..
T Consensus 159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~ 210 (362)
T 2c0c_A 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD 210 (362)
T ss_dssp TCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS
T ss_pred cCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc
Confidence 36789999999983 45667777787777899999999998877654 6664
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.15 Score=48.30 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.+++|++||=.|||+ |..++++|+..+. +|+++|.++++++.++ ++|..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~ 260 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK----ELGAD 260 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH----HHTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HcCCC
Confidence 578999999998755 5566777777775 9999999999988765 45754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.25 Score=43.61 Aligned_cols=132 Identities=12% Similarity=0.062 Sum_probs=78.5
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|..+|=.||+.+ |++..+|+.+ |.+|+.+|.+++.++.+.+.+++.+- ++..+..|.++... ..+ ++ ..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~-~~---~~ 80 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVING-FE---QI 80 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHH-HH---HH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHH-HH---HH
Confidence 4778898888653 5666666543 47999999999999999998888765 48888999887541 000 00 00
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.. .-+..|.++.++-..+...+.... ...+.++.... ......+...+..+++.||.+|..+
T Consensus 81 ~~-----~~G~iD~lvnnAg~~~~~~~~~~~---~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis 146 (256)
T 4fs3_A 81 GK-----DVGNIDGVYHSIAFANMEDLRGRF---SETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT 146 (256)
T ss_dssp HH-----HHCCCSEEEECCCCCCGGGGTSCG---GGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HH-----HhCCCCEEEecccccccccccccc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 00 115799999887654332221111 11122222111 1122234456677888899888654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.057 Score=49.98 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=37.5
Q ss_pred cCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++ +|++||-.|+|+ |..+.++|+..+. +|+++|.++++++.++ ++|..
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~----~~Ga~ 214 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK----KVGAD 214 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH----HHTCS
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC
Confidence 357 899999999854 5566677777776 9999999999888765 35654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.053 Score=50.46 Aligned_cols=50 Identities=6% Similarity=0.023 Sum_probs=35.8
Q ss_pred CCC-CCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIR-SGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~-~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++ +|++||=.|+|+ |..+.++|+..+.+|+++|.++++++.+++ ++|..
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~ 227 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD 227 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc
Confidence 567 999999998643 344555666666899999999988776542 46654
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.16 Score=45.44 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=51.4
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+|-....++. .|.++|=.|++ |+.+.++++.+ +.+|+.++.+...++.+.+.+...+..+.++.+|.++..
T Consensus 19 ~~~m~~~~~~~l-~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 94 (276)
T 3r1i_A 19 PGSMSVLDLFDL-SGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPD 94 (276)
T ss_dssp ----CGGGGGCC-TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHH
T ss_pred CCCcccccccCC-CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 344433333333 36678877765 67777777654 369999999999999999988888877888899998754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.47 Score=42.02 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=78.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC------------hhHHHHHHHHHHHcCCceEEEecCccccchhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN------------LSRLNMISENLKRLNLKATLILSDISKINLKK 196 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~ 196 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.+|.+ ...++.+...+...+..+.++..|..+...
T Consensus 9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-- 85 (287)
T 3pxx_A 9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAA-- 85 (287)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH--
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHH--
Confidence 36677877765 56777777654 3699999987 778888888888877778899999987541
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEE
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lv 272 (329)
+.--.+ ..- . ..+..|.++.++-....+ . ..+.++.... ..-...+++.+...++.+|++|
T Consensus 86 v~~~~~-~~~---~--~~g~id~lv~nAg~~~~~-----~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 150 (287)
T 3pxx_A 86 VSRELA-NAV---A--EFGKLDVVVANAGICPLG-----A----HLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII 150 (287)
T ss_dssp HHHHHH-HHH---H--HHSCCCEEEECCCCCCCC-----T----TCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred HHHHHH-HHH---H--HcCCCCEEEECCCcCccc-----C----cCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence 000000 000 0 014789999877543322 1 1122322222 2233457788888888899988
Q ss_pred EEcC
Q psy15212 273 FVTC 276 (329)
Q Consensus 273 ysTC 276 (329)
+.+.
T Consensus 151 ~isS 154 (287)
T 3pxx_A 151 TTGS 154 (287)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.26 Score=42.80 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=58.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++|=.| |+|+.+.++++.+ +.+|+.++.++..++.+.+.++..+.++.++..|..+... +.--.+. .
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~-----~ 76 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIES--IQNFFAE-----I 76 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHHHHH-----H
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHH--HHHHHHH-----H
Confidence 55677666 4567777777653 3699999999999999999998888888899999987541 1000000 0
Q ss_pred cccCCCCCCEEEEccCCc
Q psy15212 210 RFYKNKYFDRILADLPCT 227 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCs 227 (329)
....+..|.++.++--.
T Consensus 77 -~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 77 -KAENLAIDILVNNAGIT 93 (247)
T ss_dssp -HHTTCCCSEEEECCCCC
T ss_pred -HHHcCCCCEEEECCCCC
Confidence 00124689999877543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.3 Score=43.21 Aligned_cols=130 Identities=12% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.++. +...++.+.+.++..+..+.++.+|.++... +.--.+ ..-.
T Consensus 17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~--v~~~~~-~~~~ 92 (270)
T 3is3_A 17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPE--IVKLFD-QAVA 92 (270)
T ss_dssp TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHH--HHHHHH-HHHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHH--HHHHHH-HHHH
Confidence 36677777754 66777777653 368888775 5677888888888888778889999987541 100000 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+..|.++.++--...+.+. ..+.++.... ..-...+++.+.+.++.+|++|+.+.+
T Consensus 93 -----~~g~id~lvnnAg~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~ 154 (270)
T 3is3_A 93 -----HFGHLDIAVSNSGVVSFGHLK-------DVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN 154 (270)
T ss_dssp -----HHSCCCEEECCCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred -----HcCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 014689998776433222221 1233333222 223345677788888889998887553
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.047 Score=56.42 Aligned_cols=43 Identities=26% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCeEEeecCCCchHHHHHHHhCC------CEEEEEeCChhHHHHHHHHH
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD------IKLISVDNNLSRLNMISENL 175 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~------~~v~avD~~~~rl~~l~~n~ 175 (329)
.-+|||++||.||.++-+.+..+ -.++|+|+++.+++..+.|.
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 35799999999999988876432 26799999999999988885
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.089 Score=49.10 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=36.3
Q ss_pred CCC-CCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIR-SGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~-~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++ +|++||=.|+|+ |..++++|+..+.+|+++|.++.+++.++ +++|..
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~---~~lGa~ 234 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL---KNFGAD 234 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH---HTSCCS
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HhcCCc
Confidence 566 899999998643 44455666666789999999999887654 245654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=54.10 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=43.3
Q ss_pred eEEE-ecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHH
Q psy15212 182 ATLI-LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259 (329)
Q Consensus 182 v~~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~ 259 (329)
..++ ++|+.... ..+.+++||+|++|||+... +. |.. ...+.......|.
T Consensus 39 ~~l~i~gD~l~~L----------------~~l~~~svDlI~tDPPY~~~~d~--------~~~----~~~~~~~~~~~l~ 90 (319)
T 1eg2_A 39 RHVYDVCDCLDTL----------------AKLPDDSVQLIICDPPYNIMLAD--------WDD----HMDYIGWAKRWLA 90 (319)
T ss_dssp EEEEEECCHHHHH----------------HTSCTTCEEEEEECCCSBCCGGG--------GGT----CSSHHHHHHHHHH
T ss_pred ceEEECCcHHHHH----------------HhCccCCcCEEEECCCCCCCCCC--------ccC----HHHHHHHHHHHHH
Confidence 5677 89987643 12345689999999998532 22 110 1112223456778
Q ss_pred HHHhcCCCCCEEEEEc
Q psy15212 260 NLWKMLKPGGKLLFVT 275 (329)
Q Consensus 260 ~a~~~LkpgG~lvysT 275 (329)
.+.++|+|||.+++..
T Consensus 91 ~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 91 EAERVLSPTGSIAIFG 106 (319)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHHcCCCeEEEEEc
Confidence 8899999999888763
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.31 Score=42.87 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.++.+...++.+.+.+...+..+.++.+|..+..
T Consensus 28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 28 SGQVAVVTGA-SRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSD 91 (262)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHH
Confidence 4667887765 567888777654 369999999999999999998888877889999988754
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.079 Score=48.33 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=61.1
Q ss_pred CCC--CCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 130 IRS--GMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 130 ~~~--g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
+++ |+ ||=.|| +.|..+.++|+..+.+|++++.++++++.+++ +|....+-..|....
T Consensus 143 ~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~------------- 204 (324)
T 3nx4_A 143 IRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGANRILSRDEFAES------------- 204 (324)
T ss_dssp CCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTCSEEEEGGGSSCC-------------
T ss_pred cCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecCCHHHH-------------
Confidence 444 44 887775 45777788888888899999999999988764 676522211111111
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.......+|.|+ | |+|. ..+..+++.|+++|+++..
T Consensus 205 ----~~~~~~~~d~v~-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 205 ----RPLEKQLWAGAI-D--TVGD--------------------------KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp ----CSSCCCCEEEEE-E--SSCH--------------------------HHHHHHHHTEEEEEEEEEC
T ss_pred ----HhhcCCCccEEE-E--CCCc--------------------------HHHHHHHHHHhcCCEEEEE
Confidence 111235789876 4 2321 1477888999999998864
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.37 Score=42.34 Aligned_cols=133 Identities=10% Similarity=0.062 Sum_probs=78.9
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|.+||=.|++.| |.+.++++.+ +.+|+.++.+....+.+.+..+..+- .+.++.+|.++... ..+. + ..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~-~---~~ 81 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCF-A---SI 81 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH-H---HH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH-H---HH
Confidence 3668888887743 4666666543 46999999998888888877777765 48889999987541 0000 0 00
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.. ..+..|.++.++-....+.. .......+.+..... ..-...+++.+...++++|++|+.+.
T Consensus 82 ~~-----~~g~id~li~~Ag~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 82 KE-----QVGVIHGIAHCIAFANKEEL---VGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HH-----HHSCCCEEEECCCCCCGGGG---SSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HH-----HhCCeeEEEEcccccccccc---ccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 00 01478999987754431110 011112223332222 22334577788888888998887653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.4 Score=42.58 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|.++|=.|++ |+++.++++.+ +.+|+.++. +..+++.+.+.++..+..+.++.+|..+... +.-..+ ..-.
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~--v~~~~~-~~~~ 105 (271)
T 3v2g_A 30 AGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEA--IEQAIR-ETVE 105 (271)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHHHH-HHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHH--HHHHHH-HHHH
Confidence 46678877765 56777776654 368888865 4577888888888888778889999887541 000000 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+..|.++.++-....+.+. ..+.++.... ..-...+++.+.+.++.+|++|+.+.+
T Consensus 106 -----~~g~iD~lvnnAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~ 167 (271)
T 3v2g_A 106 -----ALGGLDILVNSAGIWHSAPLE-------ETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN 167 (271)
T ss_dssp -----HHSCCCEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred -----HcCCCcEEEECCCCCCCCChh-------hCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence 014789999877433222221 1223333222 122345677788888889998887543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.076 Score=48.57 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=38.2
Q ss_pred CCCCCC-eEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGM-YVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~-~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++++|+ +||-.|| |.|..+.++|+..+.+|++++.++++++.++ ++|..
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~----~lGa~ 196 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VLGAK 196 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HTTCS
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HcCCc
Confidence 577886 8999887 4566777788777888999999999988764 36765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.041 Score=51.10 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=37.7
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++||-.|+ |-|..+.++|+..+.+|+++|.++++++.+++ +|..
T Consensus 163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~ 214 (353)
T 4dup_A 163 AGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGAK 214 (353)
T ss_dssp TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS
T ss_pred cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC
Confidence 35789999998743 33556667777777899999999999887764 5654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.33 E-value=0.054 Score=49.03 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=38.1
Q ss_pred CCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+++|++||-.|+ |.|..+.++|+..+.+|+++|.++++++.++ ++|..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~----~~ga~ 172 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL----ALGAE 172 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH----HTTCS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hcCCC
Confidence 789999999987 3466677777777789999999999988764 35654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.17 Score=44.48 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.+.+||=.| |+|+.+.++++.+ +.+|++++. ++..++.+.+.++..+..+.++.+|..+... ..+. . . ..
T Consensus 20 ~~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~-~--~-~~ 94 (274)
T 1ja9_A 20 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALF-D--K-AV 94 (274)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHH-H--H-HH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH-H--H-HH
Confidence 356777665 5688888887654 369999998 8888888877787777778888999887531 0000 0 0 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. .-+.+|.|+..+-....+.+ ...+.++.... ..-...+++.+.+.++.+|++|+.+
T Consensus 95 ~-----~~~~~d~vi~~Ag~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s 155 (274)
T 1ja9_A 95 S-----HFGGLDFVMSNSGMEVWCDE-------LEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 155 (274)
T ss_dssp H-----HHSCEEEEECCCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred H-----HcCCCCEEEECCCCCCCccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEc
Confidence 0 01368999876643322211 11222322222 1223445666666666668888764
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.48 Score=41.20 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=48.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.+|.+...++.+.+.+...+..+.++.+|.++..
T Consensus 8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPE 71 (253)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHH
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 3667777765 567777777654 369999999999999999988887777888899998754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.17 Score=44.51 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=75.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+|.++..++.+.+.+ +..+.++..|..+... +.--.+ ....
T Consensus 7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~--v~~~~~-~~~~- 78 (255)
T 4eso_A 7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GPRVHALRSDIADLNE--IAVLGA-AAGQ- 78 (255)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHH--HHHHHH-HHHH-
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHH--HHHHHH-HHHH-
Confidence 46678877755 66777777654 369999999998887766554 4457888999887541 100000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+..|.++.++-.+..+.+. ..+.++.... ..-...+++.+...++.+|++|+.+.
T Consensus 79 ----~~g~id~lv~nAg~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 79 ----TLGAIDLLHINAGVSELEPFD-------QVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp ----HHSSEEEEEECCCCCCCBCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred ----HhCCCCEEEECCCCCCCCChh-------hCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 014689998877544333222 1223333222 22234567778888888898887643
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.29 Score=42.72 Aligned_cols=128 Identities=10% Similarity=0.032 Sum_probs=76.5
Q ss_pred CCCeEEeecCCCchHHHHHHHh----CCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEI----ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~----~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.+.+||=.| |+|+.+.++++. .+.+|+.++.+...++.+.+.+...+..+.++.+|..+... +.-.... ..
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~--~~~~~~~-~~- 77 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQS--IRALRDF-LR- 77 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHH--HHHHHHH-HH-
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHH--HHHHHHH-HH-
Confidence 355677555 667888887754 34699999999998888888887777668888999887531 1000000 00
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCC-hhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRR-KNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~-~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+.+|.|+..+-....+. .... .++... ...-...+++.+.+.++++|++|+.+.
T Consensus 78 --~--~~g~id~li~~Ag~~~~~~--------~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 78 --K--EYGGLDVLVNNAGIAFKVA--------DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp --H--HHSSEEEEEECCCCCCCTT--------CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred --H--hcCCCCEEEECCcccccCC--------CccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence 0 0136899998764332111 0011 122221 122334577778888877888888754
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.33 Score=42.36 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=46.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.+...+..+.++.+|..+..
T Consensus 7 ~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 69 (247)
T 2jah_A 7 GKVALITGA-SSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQ 69 (247)
T ss_dssp TCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 567777775 467777777653 369999999999998888888777767888899988754
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.23 Score=43.57 Aligned_cols=86 Identities=6% Similarity=-0.042 Sum_probs=58.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.++|=.|++ ||.+.++++.+ |.+|+.+|.+..+++.+.+.++..+..+.++.+|.++... +.--.+ .
T Consensus 6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~--v~~~~~-----~ 77 (252)
T 3h7a_A 6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDE--VTAFLN-----A 77 (252)
T ss_dssp CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHH--HHHHHH-----H
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHH--HHHHHH-----H
Confidence 35677777665 56777776653 3699999999999999999998888778899999987541 100000 0
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
.. -. +..|.++.++-..
T Consensus 78 ~~-~~-g~id~lv~nAg~~ 94 (252)
T 3h7a_A 78 AD-AH-APLEVTIFNVGAN 94 (252)
T ss_dssp HH-HH-SCEEEEEECCCCC
T ss_pred HH-hh-CCceEEEECCCcC
Confidence 00 01 4789999877544
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.089 Score=50.70 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=39.4
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||=.|| |-|..++++|+..+.++++++.++.+++.++ ++|..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~----~lGa~ 275 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR----AMGAE 275 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HHTCC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH----hhCCc
Confidence 46789999998886 3466777788878889999999999988764 46765
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.3 Score=43.43 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=47.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.| |+|+.+.++++.+ +.+|+.++.+...++.+.+.+...+..+..+..|..+..
T Consensus 27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 90 (270)
T 3ftp_A 27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDAT 90 (270)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHH
Confidence 366777666 5567777777653 369999999999999999988888888888889988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.039 Score=51.35 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=35.9
Q ss_pred CCCCC------CeEEeecCCC-chHH-HHHH-HhCCCE-EEEEeCChh---HHHHHHHHHHHcCCc
Q psy15212 129 DIRSG------MYVLDACSAP-GGKT-CHLL-EIADIK-LISVDNNLS---RLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g------~~VLDlcag~-G~kt-~~la-~~~~~~-v~avD~~~~---rl~~l~~n~~~~g~~ 181 (329)
.+++| ++||-.|+|+ |..+ +++| +..+.+ |+++|.+++ +++.++ ++|..
T Consensus 163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~ 224 (357)
T 2b5w_A 163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDAT 224 (357)
T ss_dssp HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTCE
T ss_pred CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCCc
Confidence 46789 9999999843 4455 6666 666655 999999998 887654 46754
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.31 Score=43.24 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=47.1
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|++ ||.+.++++.+ |.+|+.++.+..+++.+.+.++..+..+.++..|.++..
T Consensus 4 ~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 4 DKVILITGAS-GGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRH 66 (264)
T ss_dssp TCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 5567766655 66777777654 369999999999999999988888777888889988754
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.47 Score=42.62 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=75.8
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.++|=.|++.| |.+.++++.+ +.+|+.++.++...+.+++..+..+ .+.++.+|.++... ..+.-.. .
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~----~ 104 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG-AFVAGHCDVADAASIDAVFETL----E 104 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT-CEEEEECCTTCHHHHHHHHHHH----H
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CceEEECCCCCHHHHHHHHHHH----H
Confidence 4778999998764 5666666543 3699999999776666666665554 46788899887541 0000000 0
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+..|.++.++--...+.+ ....+..+.++.... ..-...+++.+...++.+|++|+.+.
T Consensus 105 ---~--~~g~iD~lVnnAG~~~~~~~---~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 105 ---K--KWGKLDFLVHAIGFSDKDEL---TGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp ---H--HTSCCSEEEECCCCCCHHHH---TSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred ---H--hcCCCCEEEECCccCCcccc---cccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 0 11478999987643321000 000112223333222 22334567777888888998887653
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.2 Score=45.93 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=35.9
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
.++++|++||-.|+ |-|..+.+++...+.+|+++|.++++++.+++
T Consensus 141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~ 188 (333)
T 1wly_A 141 HKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK 188 (333)
T ss_dssp SCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred hCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35789999999885 45556666676677899999999988887754
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.14 Score=55.81 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCeEEeecCCCchHHHHHHHhCCC--EEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADI--KLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~--~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.-+++|++||.||.++-+-+ .|. .+.|+|+++..++..+.|.. ...++..|...+....+.-++.......+
T Consensus 851 ~l~viDLFsG~GGlslGfe~-AG~~~vv~avEid~~A~~ty~~N~p----~~~~~~~DI~~l~~~~~~gdi~~~~~~~l- 924 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQ-AGISETLWAIEMWDPAAQAFRLNNP----GTTVFTEDCNVLLKLVMAGEVTNSLGQRL- 924 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHH-TTSEEEEEEECCSHHHHHHHHHHCT----TSEEECSCHHHHHHHHTTTCSBCSSCCBC-
T ss_pred CceEEecccCccHHHHHHHH-CCCCceEEEEECCHHHHHHHHHhCC----CCcEeeccHHHHhHhhhccchhhhhhhhc-
Confidence 35799999999999998875 442 58899999999999888842 13466666554310000000000000111
Q ss_pred ccCCCCCCEEEEccCCccccccc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVR 233 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~ 233 (329)
...+.+|+|+--|||.+....+
T Consensus 925 -p~~~~vDvl~GGpPCQ~FS~ag 946 (1330)
T 3av4_A 925 -PQKGDVEMLCGGPPCQGFSGMN 946 (1330)
T ss_dssp -CCTTTCSEEEECCCCTTTCSSS
T ss_pred -cccCccceEEecCCCccccccc
Confidence 1124789999999998776554
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.41 Score=42.30 Aligned_cols=61 Identities=25% Similarity=0.109 Sum_probs=47.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.| |+|+.+.++++.+ +.+|+++|.++..++.+.+.++..+..+.++.+|..+..
T Consensus 30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 93 (272)
T 1yb1_A 30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE 93 (272)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHH
Confidence 356777666 4577888887654 369999999999998888888777767888999988753
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.12 Score=47.89 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=37.3
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-.|| |.|..+.+++...+.+|+++|.++++++.+ +++|..
T Consensus 166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~~ga~ 217 (351)
T 1yb5_A 166 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV----LQNGAH 217 (351)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HHTTCS
T ss_pred hCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH----HHcCCC
Confidence 45789999999986 345556666666678999999999988754 345654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.29 Score=42.94 Aligned_cols=128 Identities=9% Similarity=0.053 Sum_probs=75.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+|.+...++.+.+.+...+.++.++..|..+...-.-.+. ..-.
T Consensus 11 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~---~~~~- 85 (256)
T 3gaf_A 11 NDAVAIVTGAA-AGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIK---AALD- 85 (256)
T ss_dssp TTCEEEECSCS-SHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH---HHHH-
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH---HHHH-
Confidence 35677766654 66777777654 3699999999999999999888888778889999987541000000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC--CCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK--PGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk--pgG~lvysTC 276 (329)
..+..|.++.++--...+.+ ..+.++.... ..-...+++.+.+.++ .+|++|+.+.
T Consensus 86 ----~~g~id~lv~nAg~~~~~~~--------~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS 147 (256)
T 3gaf_A 86 ----QFGKITVLVNNAGGGGPKPF--------DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISS 147 (256)
T ss_dssp ----HHSCCCEEEECCCCCCCCCT--------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ----HcCCCCEEEECCCCCCCCCC--------CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 01478999987754332222 1223332222 1222345555555443 4678887643
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.27 Score=43.50 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=46.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH-cCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR-LNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~-~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.++.+...++.+.+.+.. .+.++.++..|..+..
T Consensus 19 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~ 83 (266)
T 4egf_A 19 DGKRALITGA-TKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPD 83 (266)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTT
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 3667776665 466777777654 36999999999999888877766 5767889999998754
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.16 Score=45.95 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=46.3
Q ss_pred EechhHHHHhhhcCC--------CCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcC-CceE
Q psy15212 116 IQDAAAQLAAPLLDI--------RSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLN-LKAT 183 (329)
Q Consensus 116 ~Qd~~s~l~~~~l~~--------~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g-~~v~ 183 (329)
.||+++++......+ -.|.+||=.|+ +|+++.++++.+ +.+|+.+|.+...++.+.+.+...+ ..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~m~~l~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~ 94 (293)
T 3rih_A 16 TQGPGSMLVVESAEPAERKVMFDLSARSVLVTGG-TKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVI 94 (293)
T ss_dssp ------------------CCTTCCTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEE
T ss_pred hcCCceeeeecCCCCcccccccCCCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEE
Confidence 456666655432221 13556776665 567777777653 3699999999999998888887776 3588
Q ss_pred EEecCccccc
Q psy15212 184 LILSDISKIN 193 (329)
Q Consensus 184 ~~~~D~~~~~ 193 (329)
++.+|.++..
T Consensus 95 ~~~~Dv~d~~ 104 (293)
T 3rih_A 95 GVRLDVSDPG 104 (293)
T ss_dssp EEECCTTCHH
T ss_pred EEEEeCCCHH
Confidence 8899998754
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.58 Score=41.30 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=45.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHH-HHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENL-KRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~-~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+ +..+..+.++.+|..+..
T Consensus 20 ~~k~~lVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~ 84 (267)
T 1vl8_A 20 RGRVALVTGG-SRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYE 84 (267)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 3567776665 577887777654 369999999999888777766 455666788889988753
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.51 Score=41.31 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+...+..+.++.+|..+..
T Consensus 8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (260)
T 2ae2_A 8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 71 (260)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 3667886665 577777777653 369999999999988887777776766788889988753
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.17 Score=48.38 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=38.4
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||=.|| |-|..++++|+..+.+|++++.++++++.++ ++|..
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~----~lGa~ 267 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR----ALGCD 267 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----hcCCC
Confidence 46789999998886 3355666777777789999999999988764 46765
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.062 Score=49.58 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=36.1
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCC-EEEEEeCChhHHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADI-KLISVDNNLSRLNMISE 173 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~-~v~avD~~~~rl~~l~~ 173 (329)
..++ +|++||-.|+|+ |..++++|+..+. +|+++|.++++++.+++
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~ 207 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP 207 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3457 899999999854 5566677777776 89999999998876654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.52 Score=42.33 Aligned_cols=128 Identities=10% Similarity=-0.017 Sum_probs=77.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC--hhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN--LSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~--~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.++.+ ....+.+.+.++..+..+.++.+|..+... ..+. + ..
T Consensus 48 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~-~---~~ 122 (294)
T 3r3s_A 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLV-H---KA 122 (294)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHH-H---HH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHH-H---HH
Confidence 3667887775 567787777654 3689999886 456777777778778778888999887541 0000 0 00
Q ss_pred cccccccCCCCCCEEEEccCCcc-ccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTG-SGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg-~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.. ..+..|.++.++--.. .+.+ ...+.++.... ..-...+++.+...++.+|++|+.+.
T Consensus 123 ~~-----~~g~iD~lv~nAg~~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 123 RE-----ALGGLDILALVAGKQTAIPEI-------KDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HH-----HHTCCCEEEECCCCCCCCSSG-------GGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HH-----HcCCCCEEEECCCCcCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 00 0147899998764221 1111 11223332222 22334577888888998999888653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.14 Score=46.67 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.8
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
.++++|++||-.|+ |-|..+.+++...+.+|+++|.++++++.+++
T Consensus 136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~ 183 (327)
T 1qor_A 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK 183 (327)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45788999999884 33444455555556799999999998887754
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.36 Score=42.93 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=74.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-------------ChhHHHHHHHHHHHcCCceEEEecCccccch-
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-------------NLSRLNMISENLKRLNLKATLILSDISKINL- 194 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-------------~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~- 194 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+|. +...++.+.+.+...+..+.++..|..+...
T Consensus 14 ~gk~~lVTGas-~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 14 QGRVAFITGAA-RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 46677777765 56777777653 369999998 7888888888888878778888999887541
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC---C
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK---P 267 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk---p 267 (329)
..+. . ..-. ..+..|.++.++--...+.+ +..+.++.... ..-...+++.+...++ .
T Consensus 93 ~~~~-~---~~~~-----~~g~id~lvnnAg~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~ 156 (280)
T 3pgx_A 93 RELV-A---DGME-----QFGRLDVVVANAGVLSWGRV-------WELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGN 156 (280)
T ss_dssp HHHH-H---HHHH-----HHCCCCEEEECCCCCCCBCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS
T ss_pred HHHH-H---HHHH-----HcCCCCEEEECCCCCCCCCc-------ccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 0000 0 0000 01478999987754332222 12233333222 1222345555555543 3
Q ss_pred CCEEEEEcC
Q psy15212 268 GGKLLFVTC 276 (329)
Q Consensus 268 gG~lvysTC 276 (329)
+|++|+.+.
T Consensus 157 ~g~iv~isS 165 (280)
T 3pgx_A 157 GGSIVVVSS 165 (280)
T ss_dssp CEEEEEECC
T ss_pred CCEEEEEcc
Confidence 788887653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.75 Score=41.16 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=76.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChh-HHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLS-RLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~-rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.++.+.. ..+.+.+.++..+..+.++.+|..+... ..+. + ..-
T Consensus 46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~-~---~~~ 120 (291)
T 3ijr_A 46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIV-Q---ETV 120 (291)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHH-H---HHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH-H---HHH
Confidence 36678877754 66777777654 369999999875 4556666677777778899999987541 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+..|.++.++--... +.+ ...+.++.... ..-...+++.+.+.++.+|++|+.+.
T Consensus 121 ~-----~~g~iD~lvnnAg~~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 121 R-----QLGSLNILVNNVAQQYPQQGL-------EYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp H-----HHSSCCEEEECCCCCCCCSSG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred H-----HcCCCCEEEECCCCcCCCCCc-------ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 0 01468999987642211 111 11223333222 22345677888888899999888654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.13 Score=52.18 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC----------C---CEEEEEeC---ChhHHHHH-----------HHHHHHcC------
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA----------D---IKLISVDN---NLSRLNMI-----------SENLKRLN------ 179 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~----------~---~~v~avD~---~~~rl~~l-----------~~n~~~~g------ 179 (329)
.-+|||+|-|+|...+...+.. . -+++++|. +.+-+..+ ++.++.+.
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3489999999999887775532 1 37899999 55555421 12233332
Q ss_pred ---------CceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH
Q psy15212 180 ---------LKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL 250 (329)
Q Consensus 180 ---------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l 250 (329)
+.+++..+|+...- +.+ .......||.|++|+-.. .++|++ |.
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l-~~~------------~~~~~~~~d~~~~D~f~p-----~~np~~-w~--------- 198 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELT-SQL------------DDSLNQKVDAWFLDGFAP-----AKNPDM-WT--------- 198 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHG-GGB------------CGGGTTCEEEEEECCSCG-----GGCGGG-SC---------
T ss_pred eEEEecCCcEEEEEecCCHHHHH-Hhc------------ccccCCcccEEEECCCCC-----cCChhh-hh---------
Confidence 11345556665432 110 000135799999998533 456763 32
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 251 SKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 251 ~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
.+++...+++++|||++...+|. ..|+..|..
T Consensus 199 ----~~~~~~l~~~~~~g~~~~t~~~~-------~~vr~~L~~ 230 (676)
T 3ps9_A 199 ----QNLFNAMARLARPGGTLATFTSA-------GFVRRGLQD 230 (676)
T ss_dssp ----HHHHHHHHHHEEEEEEEEESCCC-------HHHHHHHHH
T ss_pred ----HHHHHHHHHHhCCCCEEEeccCc-------HHHHHHHHh
Confidence 35788888899999988755444 345555554
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.46 Score=42.06 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+...+..+.++.+|..+..
T Consensus 20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 83 (273)
T 1ae1_A 20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 83 (273)
T ss_dssp TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 3667787775 567777777654 369999999999988887777777767888899988754
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.25 Score=44.07 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=79.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHhC------C--CEEEEEeC-----Ch----------------------hHHHH---HH
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIA------D--IKLISVDN-----NL----------------------SRLNM---IS 172 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~------~--~~v~avD~-----~~----------------------~rl~~---l~ 172 (329)
-|| .|+++|+.-|+-+..++... + .+|+++|. .. +.++. ..
T Consensus 69 vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 69 VPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp SCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 355 99999999999988877531 1 69999993 21 01221 11
Q ss_pred HHHHHcCC--c-eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH
Q psy15212 173 ENLKRLNL--K-ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK 249 (329)
Q Consensus 173 ~n~~~~g~--~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~ 249 (329)
+|.+++|. . ++++.+++.+.- +.+. ...+..+||.|.+|+--.
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL-~~~l-----------~~~~~~~~dlv~ID~D~Y---------------------- 193 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETV-PRYL-----------AENPQTVIALAYFDLDLY---------------------- 193 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHH-HHHH-----------HHCTTCCEEEEEECCCCH----------------------
T ss_pred hhhhhcCCCCCcEEEEEecHHHHH-HHHH-----------HhCCCCceEEEEEcCccc----------------------
Confidence 22335665 2 899999987642 1110 001345799999997410
Q ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEcCCC--CccccHHHHHHHHhhC
Q psy15212 250 LSKYSCKILNNLWKMLKPGGKLLFVTCSL--WFEESEEQAIIFSKNH 294 (329)
Q Consensus 250 l~~~q~~lL~~a~~~LkpgG~lvysTCS~--~~~Ene~vv~~~l~~~ 294 (329)
.-....++.++..|+|||.+++-.... .+.+. ..+..|+.++
T Consensus 194 --~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~-~A~~ef~~~~ 237 (257)
T 3tos_A 194 --EPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGEN-IAMRKVLGLD 237 (257)
T ss_dssp --HHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHH-HHHHHHTCTT
T ss_pred --chHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHH-HHHHHHHhhC
Confidence 012456788899999999999887632 45444 4567777766
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.45 Score=41.56 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.| |+|+.+.++++.+ +.+|++++.++..++.+.+.+...+..+.++.+|..+..
T Consensus 2 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 2 KKVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRD 64 (256)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 34566666 4567787777653 369999999999888888777776766788889988753
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.52 Score=41.30 Aligned_cols=60 Identities=7% Similarity=0.075 Sum_probs=46.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|+.+|.++..++.+.+.++..+..+.++.+|.++..
T Consensus 6 ~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 68 (257)
T 3imf_A 6 EKVVIITGG-SSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTD 68 (257)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 556776665 567777777654 369999999999999888888777767888999998754
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.5 Score=41.07 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=47.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+.+||=.| |+|+.+.++++.+ +.+|++++.++..++.+.+.++..+.++.++.+|..+..
T Consensus 12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 75 (260)
T 3awd_A 12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTE 75 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHH
Confidence 356777666 4577888887654 369999999999888887777777767888999988754
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.44 Score=41.49 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.| |+|+.+.++++.+ +.+|++++. ++..++.+.+.+...+..+.++.+|..+..
T Consensus 7 ~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 70 (261)
T 1gee_A 7 GKVVVITG-SSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVES 70 (261)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHH
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 56777666 4577888877653 369999999 888888877777776666788889988753
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.47 Score=41.81 Aligned_cols=129 Identities=11% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCC---hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNN---LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~---~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.|.++|=.|++ |+.+.++++.+- .+|+.++.+ ..+++.+.+.+...+.++.++..|.++... +.--.+ ..
T Consensus 10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~--v~~~~~-~~ 85 (262)
T 3ksu_A 10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEE--VAKLFD-FA 85 (262)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHH--HHHHHH-HH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHH--HHHHHH-HH
Confidence 36678877765 667877776543 688888764 446666666666667678889999987541 100000 00
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.. ..+..|.++.++-....+.+. ..+.++.... ..-...+++.+...++++|++|+.+.
T Consensus 86 ~~-----~~g~iD~lvnnAg~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS 148 (262)
T 3ksu_A 86 EK-----EFGKVDIAINTVGKVLKKPIV-------ETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT 148 (262)
T ss_dssp HH-----HHCSEEEEEECCCCCCSSCGG-------GCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred HH-----HcCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 00 014689999876433222221 1233333222 22334577788888888898887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.55 Score=40.28 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=45.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHH-HcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLK-RLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~-~~g~~v~~~~~D~~~~~ 193 (329)
+.++|=.|+ +|+.+.++++.+ +.+|+.++.+..+++.+.+.+. ..+..+.++.+|.++..
T Consensus 2 ~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 65 (235)
T 3l77_A 2 MKVAVITGA-SRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAE 65 (235)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHH
Confidence 445666664 567787777654 3699999999999988877775 55767889999998754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.24 Score=45.85 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=34.0
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHH
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMIS 172 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~ 172 (329)
.++++|++||-.|+ |-|..+.+++...+.+|+++|.++++++.++
T Consensus 158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 204 (354)
T 2j8z_A 158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE 204 (354)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 35788999999874 3344555666666689999999999988763
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.37 Score=42.79 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=48.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.| |+|+.+.++++.+ +.+|+.+|.++..++.+.+.++..+..+.++.+|..+..
T Consensus 25 ~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~ 88 (271)
T 4ibo_A 25 GGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSES 88 (271)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 366777666 4567777777654 369999999999999998888888877888899988754
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.47 Score=41.77 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+|.+...++.+.+.+...+..+.++.+|.++..
T Consensus 10 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 10 TDKVVVISGVG-PALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDA 73 (264)
T ss_dssp TTCEEEEESCC-TTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCcEEEEECCC-cHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 46678877765 55676666543 369999999999999999998888877889999998754
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.55 Score=40.59 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=46.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.| |+|+.+.++++.+ +.+|++++.++..++.+.+.++..+..+.++.+|..+..
T Consensus 10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 73 (255)
T 1fmc_A 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73 (255)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHH
Confidence 356777665 5688888887653 369999999999888888888777766788889988753
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.8 Score=40.82 Aligned_cols=129 Identities=10% Similarity=0.083 Sum_probs=76.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChh-------HHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLS-------RLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~-------rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.++.+.. .++.+.+.++..+..+.++.+|.++... +.--.
T Consensus 8 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~--v~~~~ 84 (285)
T 3sc4_A 8 RGKTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDA--VAAAV 84 (285)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHH--HHHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHH--HHHHH
Confidence 35677777765 56777776653 369999999877 5677777777777778889999987541 10000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCC--CCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKP--GGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lkp--gG~lvysT 275 (329)
+. .- . ..+..|.++.++-....+.+. ..+.++.... ..-...+.+.+...++. +|++|+.+
T Consensus 85 ~~-~~---~--~~g~id~lvnnAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~is 151 (285)
T 3sc4_A 85 AK-TV---E--QFGGIDICVNNASAINLGSIE-------EVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLS 151 (285)
T ss_dssp HH-HH---H--HHSCCSEEEECCCCCCCCCTT-------TSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECC
T ss_pred HH-HH---H--HcCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 00 00 0 014799999877433222221 1233333322 22334567777777764 57888765
Q ss_pred C
Q psy15212 276 C 276 (329)
Q Consensus 276 C 276 (329)
.
T Consensus 152 S 152 (285)
T 3sc4_A 152 P 152 (285)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.86 Score=40.40 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC---ceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL---KATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~---~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.+|.++..++.+.+.++..+. .+.++.+|.++..
T Consensus 10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~ 76 (281)
T 3svt_A 10 QDRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNED 76 (281)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHH
Confidence 3667787775 566777777653 36999999999999998888887765 4788889988754
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.8 Score=41.11 Aligned_cols=132 Identities=8% Similarity=0.026 Sum_probs=77.7
Q ss_pred CCCeEEeecCCC-chHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.+||=.|++. ++.+.++++.+ +.+|+.+|.++...+.+.+..+..+- +.++.+|.++... ..+. + ...
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~Dv~d~~~v~~~~-~---~~~ 103 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGV-KLTVPCDVSDAESVDNMF-K---VLA 103 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTC-CEEEECCTTCHHHHHHHH-H---HHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEcCCCCHHHHHHHH-H---HHH
Confidence 467889888864 57777776653 36999999998877777777666553 5778899887541 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+..|.++.++-......+. .+ .+..+.++.... ..-...+++.+...++.+|++|+.+.
T Consensus 104 ~-----~~g~iD~lVnnAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 104 E-----EWGSLDFVVHAVAFSDKNELK-GR--YVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp H-----HHSCCSEEEECCCCCCHHHHT-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred H-----HcCCCCEEEECCCcCCccccc-CC--hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 0 014789999877543220000 00 112233333222 22334577788888888998888643
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.71 Score=41.95 Aligned_cols=87 Identities=9% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC------------hhHHHHHHHHHHHcCCceEEEecCccccch-h
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN------------LSRLNMISENLKRLNLKATLILSDISKINL-K 195 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~ 195 (329)
.|.+||=.|++ |+++.++++.+ +.+|+.+|.+ ...++.+.+.+...+..+.++.+|..+... .
T Consensus 45 ~gk~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAA-RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 36677766654 66777776654 3699999986 677777777777777778899999987541 0
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCcc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg 228 (329)
.+. . ..-. ..+..|.++.++-.+.
T Consensus 124 ~~~-~---~~~~-----~~g~iD~lVnnAg~~~ 147 (317)
T 3oec_A 124 AVV-D---EALA-----EFGHIDILVSNVGISN 147 (317)
T ss_dssp HHH-H---HHHH-----HHSCCCEEEECCCCCC
T ss_pred HHH-H---HHHH-----HcCCCCEEEECCCCCC
Confidence 000 0 0000 0147999998775443
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.93 Score=40.21 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=74.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChh-HHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLS-RLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~-rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.++.+.. ..+.+.+.+...+.++.++..|..+... +.-..+. ...
T Consensus 28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~-~~~ 103 (283)
T 1g0o_A 28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVED--IVRMFEE-AVK 103 (283)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHHHHH-HHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHH--HHHHHHH-HHH
Confidence 3567776665 577888877654 369999998865 3566666677777778888899876431 0000000 000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.-+..|.++.++-....+.+ +..+.++.... ..-...+++.+.+.++.+|++|+.+.
T Consensus 104 -----~~g~iD~lv~~Ag~~~~~~~-------~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 104 -----IFGKLDIVCSNSGVVSFGHV-------KDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp -----HHSCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred -----HcCCCCEEEECCCcCCCCCc-------ccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 01468999987643322211 12233333222 22234466777777777888887643
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.64 Score=40.88 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=46.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcC-CceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLN-LKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g-~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.+|.+...++.+.+.++..+ .++.++.+|.++..
T Consensus 9 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~ 73 (262)
T 3pk0_A 9 QGRSVVVTGG-TKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRA 73 (262)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHH
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHH
Confidence 3567776665 567777777654 3699999999999998888888776 45888999998754
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.53 Score=41.88 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=75.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.+|.++..++.+.+.+...+..+.++..|..+...-.-.+..
T Consensus 32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~------- 103 (275)
T 4imr_A 32 RGRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIER------- 103 (275)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHH-------
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHH-------
Confidence 3667776665 467777777654 36999999999999998888888777788899998875410000000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcC--CCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKML--KPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~L--kpgG~lvysT 275 (329)
....+..|.++.++-....+.+. ..+.++..... .-...+++.+...+ +.+|++|+.+
T Consensus 104 --~~~~g~iD~lvnnAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~is 167 (275)
T 4imr_A 104 --AEAIAPVDILVINASAQINATLS-------ALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIG 167 (275)
T ss_dssp --HHHHSCCCEEEECCCCCCCBCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred --HHHhCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 00014789999877533222221 22333332221 12233455555544 3468888764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.46 Score=42.30 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=47.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.++.+...++.+.+.+...+..+.++.+|.++..
T Consensus 23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTD 86 (279)
T ss_dssp --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 36678877755 56777776543 369999999999999988888887777889999998754
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.71 Score=40.95 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=46.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.++..+..+.++.+|.++..
T Consensus 21 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~ 84 (277)
T 2rhc_B 21 DSEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 84 (277)
T ss_dssp TSCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 3567787775 567777777654 369999999999988887878777767888889988754
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.77 Score=40.16 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+... +.++.++.+|..+..
T Consensus 7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~ 70 (263)
T 3ai3_A 7 GKVAVITGS-SSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPE 70 (263)
T ss_dssp TCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 567776665 567787777654 369999999998888777766654 666788889988753
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.75 Score=39.56 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=44.4
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|+++ +.++..++.+.+.+...+.++.++.+|..+..
T Consensus 5 ~~~vlItGa-sggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (247)
T 2hq1_A 5 GKTAIVTGS-SRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPE 68 (247)
T ss_dssp TCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHH
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 557776654 577888877654 3689988 67777888777777777767888899988753
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.63 Score=40.88 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=46.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.+ +.+...++.+.+.++..+..+.++.+|.++..
T Consensus 3 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 67 (258)
T 3oid_A 3 QNKCALVTGS-SRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPA 67 (258)
T ss_dssp CCCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEecC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 3566776665 567787777654 3577776 88999999888888887877889999998754
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.58 Score=41.04 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=46.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.+...+..+.++.+|..+..
T Consensus 6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 69 (262)
T 1zem_A 6 NGKVCLVTGA-GGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEE 69 (262)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 3567776665 567787777654 369999999999988888887776767888889988753
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.8 Score=39.69 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=45.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.| |+|+.+.++++.+ +.+|+.++. ++..++.+.+.++..+.++.++.+|..+..
T Consensus 4 ~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 67 (246)
T 2uvd_A 4 GKVALVTG-ASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAE 67 (246)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 55677555 5577888877654 369999999 888888887777777766788889988754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.75 Score=40.17 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=45.9
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.| |+|+.+.++++.+ +.+|++++.++..++.+.+.++..+..+.++..|..+..
T Consensus 14 ~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 76 (266)
T 1xq1_A 14 AKTVLVTG-GTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76 (266)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHH
Confidence 55777665 4677888887654 369999999999888887777777767888889987753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.12 Score=47.80 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=37.0
Q ss_pred hcCCCCC--CeEEeecC--CCchHHHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSG--MYVLDACS--APGGKTCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g--~~VLDlca--g~G~kt~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++++| ++||-.|| |-|..+.+++...+. +|+++|.++++++.+++. +|..
T Consensus 153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~ 209 (357)
T 2zb4_A 153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD 209 (357)
T ss_dssp HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS
T ss_pred hcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc
Confidence 3468889 99999987 334455556666676 999999999887766532 5654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.65 Score=41.44 Aligned_cols=61 Identities=8% Similarity=0.040 Sum_probs=47.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+..+|=.|++ |+.+.++++.+ +.+|+.+|.+...++.+.+.+...+..+.++.+|..+..
T Consensus 27 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~ 90 (283)
T 3v8b_A 27 PSPVALITGAG-SGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDEL 90 (283)
T ss_dssp CCCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 36677877755 56777777653 369999999999999888888777777888999988754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.82 Score=40.53 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=49.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+|..+|=-|++.| ++..+|+.+ +++|+.+|+++++++.+.+.++..|.++..+.+|.++..
T Consensus 6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~ 69 (254)
T 4fn4_A 6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKK 69 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 3677787776654 666666543 479999999999999999999999988889999998754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.47 Score=43.21 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=47.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+++.++++.+ +.+|++++.+...++.+.+.+...+. .+.++..|.++..
T Consensus 7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~ 72 (319)
T 3ioy_A 7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASRE 72 (319)
T ss_dssp TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHH
T ss_pred CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHH
Confidence 36678877765 66788777654 36999999999999999888887776 4788999988754
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.9 Score=40.20 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=46.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC------------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN------------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+|.+ ...++.+.+.++..+..+.++..|.++..
T Consensus 9 ~~k~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 84 (281)
T 3s55_A 9 EGKTALITGGA-RGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRA 84 (281)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 36678877765 66777777654 3699999987 66777777777777777888999988754
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.13 Score=46.96 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCCCCC-eEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSGM-YVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g~-~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++++|+ +||-.|| |-|..+.++|+..+.+|++++.++++++.+++ +|..
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~ 197 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS 197 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc
Confidence 577886 8999886 34556667777667789999999998877653 5654
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.89 Score=40.19 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=73.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..||=.|++ |+.+.++++.+ +.+|+.++. +...++.+.+.++..+..+.++.+|..+... +.--.+ ....
T Consensus 27 ~~k~vlVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~--v~~~~~-~~~~ 102 (269)
T 4dmm_A 27 TDRIALVTGAS-RGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESE--VEALFA-AVIE 102 (269)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHH--HHHHHH-HHHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHH--HHHHHH-HHHH
Confidence 36677766654 66777777653 368988888 7888888888888887778889999987541 100000 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcC--CCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKML--KPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~L--kpgG~lvysT 275 (329)
..+..|.++.++-.+..+.+. ..+.++..... .-...+++.+.+.+ +.+|++|+.+
T Consensus 103 -----~~g~id~lv~nAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~is 164 (269)
T 4dmm_A 103 -----RWGRLDVLVNNAGITRDTLLL-------RMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIA 164 (269)
T ss_dssp -----HHSCCCEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred -----HcCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 014789999887544332221 12233332221 11233445554444 3468888764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.6 Score=41.53 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+. .+|++++.++..++.+.+.++..+..+.++.+|..+..
T Consensus 44 ~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~ 106 (285)
T 2c07_A 44 NKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKE 106 (285)
T ss_dssp SCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHH
Confidence 567776765 5788888877543 68999999998888887777776767888899988754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.17 Score=47.06 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=31.1
Q ss_pred CCeEEeecCCCchHHH---HHHHhCCCEEEEEeCCh---hHHHHHHHHHHHcCCc
Q psy15212 133 GMYVLDACSAPGGKTC---HLLEIADIKLISVDNNL---SRLNMISENLKRLNLK 181 (329)
Q Consensus 133 g~~VLDlcag~G~kt~---~la~~~~~~v~avD~~~---~rl~~l~~n~~~~g~~ 181 (329)
|++||-.|+ |+.+. ++|+..+.+|+++|.++ ++++.++ ++|..
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~----~~ga~ 229 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE----ETKTN 229 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH----HHTCE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH----HhCCc
Confidence 999999997 55544 45555557999999998 7776554 35654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=1 Score=40.05 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=45.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+... +..+.++.+|..+..
T Consensus 25 ~~k~vlITGa-sggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~ 89 (302)
T 1w6u_A 25 QGKVAFITGG-GTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPD 89 (302)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHH
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHH
Confidence 3567776665 577888877654 369999999998888777766654 656888999988753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.33 Score=44.71 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=37.4
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v 182 (329)
..+++|++||-.|| |.|..++++|+..+.+|+++ .++++++.++ ++|...
T Consensus 146 ~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~----~lGa~~ 197 (343)
T 3gaz_A 146 AQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVR----DLGATP 197 (343)
T ss_dssp TCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHH----HHTSEE
T ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHH----HcCCCE
Confidence 45789999999984 34667777787777899999 8888877654 457653
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.81 Score=40.60 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|..+|=-|++ +|++..+|+.+ |++|+.+|++++.++.+.+.+...|.++..+.+|.++... +.--.+ ...
T Consensus 8 ~gKvalVTGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~--v~~~~~-~~~-- 81 (255)
T 4g81_D 8 TGKTALVTGSA-RGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELA--IEAAFS-KLD-- 81 (255)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHH--HHHHHH-HHH--
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHH--HHHHHH-HHH--
Confidence 36677777765 45777766654 3799999999999999999999988888888999887541 100000 000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHH----HHHHHHHHHHhcC---CCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK----YSCKILNNLWKML---KPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~----~q~~lL~~a~~~L---kpgG~lvysT 275 (329)
-.-++.|.++.++--...+.+ +..+.++...... -...+.+.+.+.+ +.+|.+|..+
T Consensus 82 ---~~~G~iDiLVNNAG~~~~~~~-------~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnis 145 (255)
T 4g81_D 82 ---AEGIHVDILINNAGIQYRKPM-------VELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIG 145 (255)
T ss_dssp ---HTTCCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred ---HHCCCCcEEEECCCCCCCCCh-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEe
Confidence 012578999987743322222 2223333333221 1223445555555 2568888764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=1.4 Score=38.56 Aligned_cols=126 Identities=6% Similarity=0.000 Sum_probs=72.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH-cCCc-eEEEecCccccch-hhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR-LNLK-ATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~-~g~~-v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
|..+|=.|++ |+.+.++++.+ +.+|+.+|.+...++.+.+.+.. .+-. +.++..|.++... ..+. . ...
T Consensus 8 ~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~-~---~~~ 82 (265)
T 3lf2_A 8 EAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFA-E---ACE 82 (265)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHH-H---HHH
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHH-H---HHH
Confidence 5677777655 56777776653 36999999999999988888776 4443 7888899887541 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCC--CCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKP--GGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lkp--gG~lvysT 275 (329)
. ..+..|.++.++-.+..+.+. ..+.++.... ..-...+.+.+...++. +|++|+.+
T Consensus 83 ~-----~~g~id~lvnnAg~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~is 145 (265)
T 3lf2_A 83 R-----TLGCASILVNNAGQGRVSTFA-------ETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVN 145 (265)
T ss_dssp H-----HHCSCSEEEECCCCCCCBCTT-------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred H-----HcCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEC
Confidence 0 014689999877543222221 1223332222 22233455666665543 57777654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=1.5 Score=38.58 Aligned_cols=59 Identities=8% Similarity=-0.055 Sum_probs=44.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHc-CCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRL-NLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~ 192 (329)
|.++|=.| |+|+.+.++++.+ +.+|+.++. ++..++.+.+.+... +..+.++.+|..+.
T Consensus 11 ~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 74 (276)
T 1mxh_A 11 CPAAVITG-GARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLS 74 (276)
T ss_dssp CCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCc
Confidence 55677555 5577888887654 369999999 988888877777655 65678888998876
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.79 Score=39.37 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=44.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH-cCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR-LNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~-~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+.. .+..+.++.+|..+..
T Consensus 7 ~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 70 (248)
T 2pnf_A 7 GKVSLVTGS-TRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEE 70 (248)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHH
Confidence 556776654 678888887654 36999999999988877776655 4666788889988753
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.81 Score=40.45 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=45.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-------------ChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-------------NLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-------------~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ |+++.++++.+ +.+|+.+|. +...++.+.+.+...+..+.++..|..+..
T Consensus 10 ~~k~~lVTGas-~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 10 EGRVAFITGAA-RGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 36677777755 56777776543 369999998 677888877778777777888999988754
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.21 E-value=1.1 Score=39.83 Aligned_cols=124 Identities=10% Similarity=0.094 Sum_probs=69.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.+|.+...++.+.+.+ +..+.++.+|.++... ..+ ++ ....
T Consensus 28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~-~~---~~~~ 99 (277)
T 3gvc_A 28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAM-VD---ACVA 99 (277)
T ss_dssp TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHH-HH---HHHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHH-HH---HHHH
Confidence 36677766655 56777766543 369999999998877665544 5567888999887541 000 00 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcC--CCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKML--KPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~L--kpgG~lvysT 275 (329)
..+..|.++.++--...+.+. ..+.++.... ..-...+++.+...+ +.+|++|+.+
T Consensus 100 -----~~g~iD~lvnnAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~is 161 (277)
T 3gvc_A 100 -----AFGGVDKLVANAGVVHLASLI-------DTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLS 161 (277)
T ss_dssp -----HHSSCCEEEECCCCCCCBCTT-------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred -----HcCCCCEEEECCCCCCCCChh-------hCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 014689999876433222211 1233333222 122233455555544 4578888764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.61 Score=40.94 Aligned_cols=128 Identities=6% Similarity=-0.013 Sum_probs=75.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+ +.+....+.+.+.++..+..+.++.+|.++... ..+. . ...
T Consensus 7 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~-~---~~~ 81 (259)
T 3edm_A 7 TNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAI-S---AAA 81 (259)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHH-H---HHH
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH-H---HHH
Confidence 36677777655 56777776643 3688877 778888888888888777778889999987541 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCc-cccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCT-GSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCs-g~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. .-+..|.++.++--. ..+.+ ...+.++.... ..-...+++.+...++++|++|+.+.
T Consensus 82 ~-----~~g~id~lv~nAg~~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 82 D-----KFGEIHGLVHVAGGLIARKTI-------AEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp H-----HHCSEEEEEECCCCCCCCCCT-------TTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred H-----HhCCCCEEEECCCccCCCCCh-------hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 0 014689998876311 11111 11223332222 22334577788888888888887654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.13 E-value=0.99 Score=40.26 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=45.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH-----cCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR-----LNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~-----~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|++++.+...++.+.+.+.. .+..+.++.+|..+..
T Consensus 18 ~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T 1yxm_A 18 GQVAIVTGG-ATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEE 85 (303)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHH
Confidence 567887775 578888887654 36999999999988888777765 3555888899988753
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.77 Score=40.59 Aligned_cols=129 Identities=10% Similarity=0.119 Sum_probs=76.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.+ ..+...++.+.+.++..+..+.++..|.++... ..+. + ...
T Consensus 26 ~~k~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~-~---~~~ 100 (267)
T 3u5t_A 26 TNKVAIVTGAS-RGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLF-A---TAE 100 (267)
T ss_dssp -CCEEEEESCS-SHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH-H---HHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH-H---HHH
Confidence 36677777655 56777776554 3577776 567778888888888888778888999987541 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHH----HHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKK----LSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~----l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
. ..+..|.++.++--...+.+.. .+.++... ...-...+++.+.+.++.+|++|+.+.+
T Consensus 101 ~-----~~g~iD~lvnnAG~~~~~~~~~-------~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 163 (267)
T 3u5t_A 101 E-----AFGGVDVLVNNAGIMPLTTIAE-------TGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS 163 (267)
T ss_dssp H-----HHSCEEEEEECCCCCCCCCGGG-------CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred H-----HcCCCCEEEECCCCCCCCChhh-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence 0 0147899998774332222221 22232221 2223345677778888888998887543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=92.11 E-value=0.77 Score=40.18 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.+|.+...++.+.+.+ +-.+.++.+|.++... +.-..+. .-
T Consensus 7 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~--v~~~~~~-~~-- 77 (259)
T 4e6p_A 7 EGKSALITGS-ARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAYAVQMDVTRQDS--IDAAIAA-TV-- 77 (259)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHH--HHHHHHH-HH--
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCCceEEEeeCCCHHH--HHHHHHH-HH--
Confidence 4667787764 577787777654 369999999988877665544 4457888899887541 0000000 00
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
. ..+..|.++.++-..
T Consensus 78 -~--~~g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 78 -E--HAGGLDILVNNAALF 93 (259)
T ss_dssp -H--HSSSCCEEEECCCCC
T ss_pred -H--HcCCCCEEEECCCcC
Confidence 0 124799999887544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.86 Score=40.52 Aligned_cols=61 Identities=7% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.+|. ++..++.+.+.+...+..+.++.+|.++..
T Consensus 28 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 92 (280)
T 4da9_A 28 ARPVAIVTGGR-RGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLS 92 (280)
T ss_dssp CCCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGG
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 46677777654 56777776653 369999995 888888888888888877889999998754
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.02 E-value=1.4 Score=39.50 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=46.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC------------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN------------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ ||++.++++.+ +.+|+.+|.+ ...++.+.+.++..+..+.++..|.++..
T Consensus 27 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 27 EGKVAFITGAA-RGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 46678877765 56777776543 3699999987 77788777778887877889999998754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.01 E-value=1 Score=40.02 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=45.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~ 192 (329)
.+.+||=.|+ +||++.++++.+ +.+|+.++.+..+++.+.+.+...+- .+.++..|..+.
T Consensus 11 ~~k~vlITGa-s~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 74 (311)
T 3o26_A 11 KRRCAVVTGG-NKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDP 74 (311)
T ss_dssp -CCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSC
T ss_pred CCcEEEEecC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCc
Confidence 3567776665 477888877654 36999999999999888888877654 488899999875
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.88 Score=42.27 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=34.7
Q ss_pred CCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 130 IRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 130 ~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
+++|++||=.|+ |-|..+.++|+..+.+|++++ ++.+++.+ +++|..
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~----~~lGa~ 229 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV----RKLGAD 229 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH----HHTTCS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH----HHcCCC
Confidence 788999999874 345566777777778999998 77776654 456765
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.51 Score=41.29 Aligned_cols=133 Identities=9% Similarity=0.032 Sum_probs=77.9
Q ss_pred CCCCeEEeecCC-CchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 131 RSGMYVLDACSA-PGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 131 ~~g~~VLDlcag-~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.++.+||=.|++ +|+.+.++++.+ +.+|+.++.+....+.+++..+..+ .+.++.+|.++... ..+.-...
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~--- 87 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG-SELVFPCDVADDAQIDALFASLK--- 87 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHH---
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHHH---
Confidence 457789988884 478888887654 3699999998776776666666654 36788899887541 00000000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCccc-CChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWL-RRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~-~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+..|.++.++--...+.+. ...+. .+.++..... .-...+++.+...++++|++|+.+.
T Consensus 88 ----~--~~g~id~lv~nAg~~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 88 ----T--HWDSLDGLVHSIGFAPREAIA---GDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp ----H--HCSCEEEEEECCCCCCGGGGS---SCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ----H--HcCCCCEEEECCccCcccccc---CccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 0 114789999877433221100 00111 2333333322 2234567778888888888887643
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.9 Score=40.31 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC----------------hhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN----------------LSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~----------------~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
.|..+|=.|++ |+.+.++++.+ +.+|+.+|.+ .+.++.+.+.+...+..+.++..|.++.
T Consensus 10 ~~k~~lVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 10 EGKVAFVTGAA-RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 36677777765 55777776653 3699999987 6777777777777777788899999875
Q ss_pred c
Q psy15212 193 N 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 89 ~ 89 (286)
T 3uve_A 89 D 89 (286)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.99 Score=39.68 Aligned_cols=83 Identities=11% Similarity=0.066 Sum_probs=55.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcC--CceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLN--LKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g--~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.+|.+...++.+.+.+...+ ..+..+..|..+... +.
T Consensus 9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~--~~-------- 77 (267)
T 3t4x_A 9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQG--CQ-------- 77 (267)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHH--HH--------
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHH--HH--------
Confidence 3567776665 467777777654 3699999999999988888777664 336788889876431 00
Q ss_pred ccccccCCCCCCEEEEccCCc
Q psy15212 207 NRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCs 227 (329)
.-+. .-+..|.++.++--.
T Consensus 78 ~~~~--~~g~id~lv~nAg~~ 96 (267)
T 3t4x_A 78 DVIE--KYPKVDILINNLGIF 96 (267)
T ss_dssp HHHH--HCCCCSEEEECCCCC
T ss_pred HHHH--hcCCCCEEEECCCCC
Confidence 0000 124789999877543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.78 E-value=1.2 Score=39.62 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=69.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
|.+||=.|++ |+.+.++++.+ +.+|+.+|.++..++.+.+. .+..+..+..|.++... +.--.+ ....
T Consensus 27 ~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~--v~~~~~-~~~~-- 97 (277)
T 4dqx_A 27 QRVCIVTGGG-SGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IGSKAFGVRVDVSSAKD--AESMVE-KTTA-- 97 (277)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HCTTEEEEECCTTCHHH--HHHHHH-HHHH--
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hCCceEEEEecCCCHHH--HHHHHH-HHHH--
Confidence 5677777654 66777777654 36999999998877665544 45567888899887541 000000 0000
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCC--CCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKP--GGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lkp--gG~lvysTC 276 (329)
..+..|.++.++-....+.+. ..+.++.... ..-...+++.+...++. +|++|+.+.
T Consensus 98 ---~~g~iD~lv~nAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS 160 (277)
T 4dqx_A 98 ---KWGRVDVLVNNAGFGTTGNVV-------TIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTS 160 (277)
T ss_dssp ---HHSCCCEEEECCCCCCCBCTT-------TSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECC
T ss_pred ---HcCCCCEEEECCCcCCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence 014789999877543322221 1223333222 12223455566665544 578887653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.75 Score=41.72 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=35.2
Q ss_pred hcCCCCCCeEEeec-CC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDAC-SA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlc-ag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++|++||=.| +| -|..+.++|+..+.+|++++ ++.+++. ++++|..
T Consensus 147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~----~~~lGa~ 198 (321)
T 3tqh_A 147 QAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAF----LKALGAE 198 (321)
T ss_dssp HTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHH----HHHHTCS
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHH----HHHcCCC
Confidence 34689999999875 33 46667777877788999987 5555444 4457765
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.75 E-value=1.4 Score=38.50 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=45.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.+... +..+.++.+|..+..
T Consensus 13 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 77 (267)
T 1iy8_A 13 DRVVLITGG-GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEA 77 (267)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHH
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHH
Confidence 567777775 577777777654 369999999999888877777655 556788889988754
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.64 Score=42.24 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=46.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC----------hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN----------LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~----------~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.+|.+ ...++.+.+.+...+..+.++.+|..+..
T Consensus 26 ~gk~vlVTGas-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 99 (322)
T 3qlj_A 26 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWD 99 (322)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 46677766654 67777777654 3699999987 77888888888887777888899988754
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.71 E-value=1.1 Score=39.04 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=72.7
Q ss_pred CCCeEEeecCC-CchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCccccchhhhhhhhccccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL-KATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.|.+||=.|++ . |.+.++++.+ +.+|+.+|.+...++.+.+.++..+- .+.++.+|.++... +.--.+. ..
T Consensus 21 ~~k~vlITGasg~-GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~--v~~~~~~-~~ 96 (266)
T 3o38_A 21 KGKVVLVTAAAGT-GIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEA--VDALITQ-TV 96 (266)
T ss_dssp TTCEEEESSCSSS-SHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHH--HHHHHHH-HH
T ss_pred CCCEEEEECCCCC-chHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHH--HHHHHHH-HH
Confidence 36678877763 3 4566665543 46999999999999988888876653 48899999987541 1000000 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCC---CCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLK---PGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lk---pgG~lvysT 275 (329)
. ..+..|.++.++-....+.+. ..+.++..... .-...+++.+...++ .+|++|+.+
T Consensus 97 ---~--~~g~id~li~~Ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s 160 (266)
T 3o38_A 97 ---E--KAGRLDVLVNNAGLGGQTPVV-------DMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNA 160 (266)
T ss_dssp ---H--HHSCCCEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEEC
T ss_pred ---H--HhCCCcEEEECCCcCCCCCcc-------cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 0 014789999877543332221 12333332221 122345555555543 567777754
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.67 Score=41.59 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=74.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=-|++. |++..+|+.+ |++|+.+|.+.+.++.+.+ ..|-++..+.+|.++... ..+. + ..-.
T Consensus 28 ~gKvalVTGas~-GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~---~~g~~~~~~~~Dv~~~~~v~~~~-~---~~~~ 99 (273)
T 4fgs_A 28 NAKIAVITGATS-GIGLAAAKRFVAEGARVFITGRRKDVLDAAIA---EIGGGAVGIQADSANLAELDRLY-E---KVKA 99 (273)
T ss_dssp TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHCTTCEEEECCTTCHHHHHHHH-H---HHHH
T ss_pred CCCEEEEeCcCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcCCCeEEEEecCCCHHHHHHHH-H---HHHH
Confidence 477778777665 5676666554 3799999999988776544 446667788899887541 0000 0 0001
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+ -++.|.++.++--...+.+. ..+.++..... .-...+.+.+.+.++.+|.+|..+
T Consensus 100 ~-----~G~iDiLVNNAG~~~~~~~~-------~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 100 E-----AGRIDVLFVNAGGGSMLPLG-------EVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp H-----HSCEEEEEECCCCCCCCCTT-------SCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred H-----cCCCCEEEECCCCCCCCChh-------hccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1 15789988877433222221 22333333222 223456778888999988887764
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=91.63 E-value=1.3 Score=38.63 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=43.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhH--HHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSR--LNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~r--l~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|+.++.++.. ++.+.+.++..+..+.++..|..+..
T Consensus 2 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 66 (258)
T 3a28_C 2 SKVAMVTGG-AQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKA 66 (258)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 446666665 567777777654 3699999999887 77777777666666888889988754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.49 Score=42.25 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=46.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.+|.+...++.+.+.+...+..+.++.+|.++..
T Consensus 7 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 70 (280)
T 3tox_A 7 EGKIAIVTGAS-SGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEA 70 (280)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHH
Confidence 36677766654 66777776643 369999999999999888888776767888889988754
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.48 E-value=1.3 Score=38.63 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=45.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.| |+|+.+.++++.+ +.+|+.++.++..++.+.+.+...+.++.++.+|..+..
T Consensus 5 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 67 (260)
T 2qq5_A 5 GQVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES 67 (260)
T ss_dssp TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHH
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHH
Confidence 55677666 5567888877654 369999999999988888777776766788889988754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=1.6 Score=38.83 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=44.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEe-CChhHHHHHHHHHH-HcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVD-NNLSRLNMISENLK-RLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD-~~~~rl~~l~~n~~-~~g~~v~~~~~D~~~~ 192 (329)
|.++|=.|+ +|+.+.++++.+ +.+|+.++ .++..++.+.+.+. ..+..+.++..|..+.
T Consensus 9 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~ 72 (291)
T 1e7w_A 9 VPVALVTGA-AKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 72 (291)
T ss_dssp CCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCc
Confidence 556776665 467888777654 36999999 99998888877776 5566688888998764
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=91.38 E-value=1.4 Score=37.78 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=43.1
Q ss_pred CeEEeecCCCchHHHHHHHhC---CCEEEE-EeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIA---DIKLIS-VDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~---~~~v~a-vD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.+||=. -|+|+.+.++++.+ +.+|++ .+.++..++.+.+.++..+..+.++.+|.++..
T Consensus 2 k~vlVT-GasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 64 (244)
T 1edo_A 2 PVVVVT-GASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEA 64 (244)
T ss_dssp CEEEET-TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred CEEEEe-CCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHH
Confidence 345544 45688888887754 368888 488888888887777776766788889988754
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.39 Score=44.77 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 131 RSGMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 131 ~~g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++|++||=.|++ .|..++++|+..+.+|+++. ++++++.+ +++|..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~----~~lGa~ 210 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLA----KSRGAE 210 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH----HHTTCS
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHH----HHcCCc
Confidence 789999999883 67888888888888999885 88887755 457764
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=91.28 E-value=0.76 Score=42.42 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=33.8
Q ss_pred cCCCCCCeEEeecC--CCchHHHHHHHhCCCEEE-EEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACS--APGGKTCHLLEIADIKLI-SVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~-avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||=.|| +.|..++++|+..+++++ .++.++.+-+ ..+.++++|..
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~-~~~~~~~lGa~ 218 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQK-LSDRLKSLGAE 218 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHH-HHHHHHHTTCS
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHH-HHHHHHhcCCc
Confidence 36789999999986 456677788877776554 4455443221 22334567865
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.26 E-value=1 Score=39.81 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC---ceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL---KATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~---~v~~~~~D~~~~~ 193 (329)
|.++|=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+...+. .+.++.+|..+..
T Consensus 6 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 71 (280)
T 1xkq_A 6 NKTVIITGS-SNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTED 71 (280)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHH
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHH
Confidence 556776664 567777777653 36999999999998888877776665 5788889988754
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=91.03 E-value=0.56 Score=43.33 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=36.8
Q ss_pred CCCCC-CeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 129 DIRSG-MYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 129 ~~~~g-~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++++| ++||=.|| +.|..++++|+..+.+++++..+...+...++.++++|..
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT 218 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe
Confidence 57889 99998876 3455677777777788888876665543334445667865
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.96 E-value=0.56 Score=41.40 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=42.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHH---cCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKR---LNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~---~g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|++++.++.+++.+.+.+.. .+..+.++.+|..+..
T Consensus 6 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (278)
T 1spx_A 6 EKVAIITGS-SNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDA 71 (278)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHH
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHH
Confidence 556776665 577887777653 36999999999988877776632 2334778889988753
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=1.6 Score=37.72 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=72.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.++|=.| |+|+.+.++++.+ +.+|+.++. +..+++.+.+.++..+.++.++.+|.++... +.--.+ ..-.
T Consensus 4 ~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~--v~~~~~-~~~~- 78 (246)
T 3osu_A 4 TKSALVTG-ASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADE--VKAMIK-EVVS- 78 (246)
T ss_dssp SCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHH--HHHHHH-HHHH-
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHH--HHHHHH-HHHH-
Confidence 45566555 4567888777654 368888877 6688888888888888778889999887541 000000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcC--CCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKML--KPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~L--kpgG~lvysTC 276 (329)
..+..|.++.++-.+..+.+. ..+.++.... ..-...+++.+...+ +.+|++|+.+.
T Consensus 79 ----~~g~id~lv~nAg~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS 141 (246)
T 3osu_A 79 ----QFGSLDVLVNNAGITRDNLLM-------RMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSS 141 (246)
T ss_dssp ----HHSCCCEEEECCCCCCCCCTT-------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ----HcCCCCEEEECCCCCCCCCcc-------cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 014789999887544332221 1222322221 112233455555444 35678887643
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.94 E-value=1.5 Score=38.54 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=46.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~ 193 (329)
.|.+||=.| |+|+.+.++++.+ +.+|++++.++.+++.+.+.+...+.. +.++.+|..+..
T Consensus 31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 96 (279)
T 1xg5_A 31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEE 96 (279)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHH
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHH
Confidence 356777666 5577888877653 369999999999998888888777643 678889988754
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.4 Score=38.92 Aligned_cols=128 Identities=9% Similarity=0.004 Sum_probs=72.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhH-------HHHHHHHHHHcCCceEEEecCccccch-hhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSR-------LNMISENLKRLNLKATLILSDISKINL-KKLYID 200 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~r-------l~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~ 200 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.++.+... ++.+.+.+...+.++.++..|..+... ..+. .
T Consensus 5 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~-~ 82 (274)
T 3e03_A 5 SGKTLFITGAS-RGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV-A 82 (274)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH-H
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH-H
Confidence 36677777765 66777776543 3699999998764 666666777777778889999987541 0000 0
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC--CCCEEEEE
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK--PGGKLLFV 274 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk--pgG~lvys 274 (329)
... . ..+..|.++.++--...+.+. ..+.++.... ..-...+.+.+...++ .+|++|+.
T Consensus 83 ---~~~---~--~~g~iD~lvnnAG~~~~~~~~-------~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~i 147 (274)
T 3e03_A 83 ---ATV---D--TFGGIDILVNNASAIWLRGTL-------DTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTL 147 (274)
T ss_dssp ---HHH---H--HHSCCCEEEECCCCCCCCCGG-------GSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEEC
T ss_pred ---HHH---H--HcCCCCEEEECCCcccCCCcc-------cCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEE
Confidence 000 0 014789999877433222221 1222332221 1222345556655553 35788876
Q ss_pred cC
Q psy15212 275 TC 276 (329)
Q Consensus 275 TC 276 (329)
+.
T Consensus 148 sS 149 (274)
T 3e03_A 148 AP 149 (274)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.90 E-value=1.6 Score=39.07 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=46.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CC---EEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DI---KLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~---~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ |+++.++++.+ +. .|+.++.+...++.+.+.+... +..+.++.+|.++..
T Consensus 32 ~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~ 100 (287)
T 3rku_A 32 AKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAE 100 (287)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGG
T ss_pred CCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHH
Confidence 36678877754 66777777654 23 9999999999999888888765 445788899998754
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=90.88 E-value=0.96 Score=39.84 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=46.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.++. +....+.+.+.++..+..+.++..|..+..
T Consensus 28 ~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 92 (271)
T 4iin_A 28 TGKNVLITGAS-KGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASES 92 (271)
T ss_dssp SCCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 36677766654 66777777653 369999998 677778888888888878889999988754
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=90.81 E-value=1.4 Score=38.62 Aligned_cols=60 Identities=5% Similarity=0.000 Sum_probs=42.9
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEe-CChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVD-NNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD-~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+..+|=.| |+|+.+.++++.+ +.+|+.++ .+...++.....+...+..+.++.+|..+..
T Consensus 25 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 88 (269)
T 3gk3_A 25 KRVAFVTG-GMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFE 88 (269)
T ss_dssp CCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHH
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHH
Confidence 55667555 4577887777654 36898888 6666777666666666667889999998754
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.83 Score=40.69 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=45.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~ 193 (329)
.|.++|=.|+ +|+.+.++++.+ +.+|+.+|.++..++.+.+.+...+-. +.++.+|.++..
T Consensus 32 ~gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 32 EGRIALVTGG-GTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPD 96 (281)
T ss_dssp --CEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHH
Confidence 3667776665 567888777654 369999999999998888887765544 588899988754
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.93 Score=39.23 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEE-eCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISV-DNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~av-D~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.+||=.|++ |+.+.++++.+ +.+|+.+ +.+...++.+.+.+...+..+.++..|..+... ..+.-.......
T Consensus 6 ~~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (255)
T 3icc_A 6 KGKVALVTGAS-RGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 84 (255)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence 36677766655 66777777654 3577664 677888888888888777778888899887541 000000000000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.+ ......|.++.++-....+.+. ..+.++.... ..-...+++.+...++++|++|+.+..
T Consensus 85 ~~---~~~~~id~lv~nAg~~~~~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~ 149 (255)
T 3icc_A 85 NR---TGSTKFDILINNAGIGPGAFIE-------ETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA 149 (255)
T ss_dssp HH---HSSSCEEEEEECCCCCCCBCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred cc---ccCCcccEEEECCCCCCCCChh-------hCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence 00 0123589999877543222221 1223333222 223345777788888888988887543
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=1.3 Score=38.57 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=43.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhH-HHHHHHHHHHc-CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSR-LNMISENLKRL-NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~r-l~~l~~n~~~~-g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|+.++.++.. ++.+.+.+... +..+.++.+|..+..
T Consensus 4 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (260)
T 1x1t_A 4 GKVAVVTGS-TSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGE 68 (260)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHH
Confidence 556776665 567888777654 3699999999887 77777666554 666788889988754
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.68 E-value=2.3 Score=37.57 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=70.0
Q ss_pred CCCeEEeecCCC-chHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAP-GGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~-G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.+||=.|+++ |+.+.++++.+ +.+|+.++.++..-+.+++..+..+ .+.++.+|..+... ..+. . ...
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~-~---~~~ 94 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFG-SDLVVKCDVSLDEDIKNLK-K---FLE 94 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHH-H---HHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHH-H---HHH
Confidence 467889888874 88888887654 3699999998853223333223333 25678889887531 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC-CCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK-PGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk-pgG~lvysTC 276 (329)
. ..+..|.++.++-......+. .| ....+.++.... ..-...+++.+.+.++ .+|++|+.+.
T Consensus 95 ---~--~~g~iD~lv~~Ag~~~~~~~~-~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS 161 (285)
T 2p91_A 95 ---E--NWGSLDIIVHSIAYAPKEEFK-GG--VIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY 161 (285)
T ss_dssp ---H--HTSCCCEEEECCCCCCGGGGS-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred ---H--HcCCCCEEEECCCCCCcccCC-CC--cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 0 114789999877433210000 00 011223332222 1223456677777665 5788887653
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.39 E-value=1.7 Score=37.29 Aligned_cols=60 Identities=18% Similarity=0.065 Sum_probs=44.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CC-------EEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DI-------KLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~-------~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.| |+|+.+.++++.+ +. .|++++.++..++.+.+.+...+..+.++.+|..+..
T Consensus 2 ~k~vlITG-asggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (244)
T 2bd0_A 2 KHILLITG-AGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMA 71 (244)
T ss_dssp CEEEEEET-TTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHH
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHH
Confidence 34566555 5677888877654 24 8999999999888888777766666888899988753
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=90.39 E-value=0.86 Score=42.84 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=70.5
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhh
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKK 196 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~ 196 (329)
+|+++++....+.... .+||++..+-|..++.++. ...++.+.-+...... ++++|+.... .+. ..
T Consensus 31 ~~~~~~~l~~~~~~~~-~~~l~~n~~~g~~~~~~~~--~~~~~~~~~~~~~~~~----l~~~~~~~~~--~~~--~~--- 96 (381)
T 3dmg_A 31 RDPVHDLLQKTVEPFG-ERALDLNPGVGWGSLPLEG--RMAVERLETSRAAFRC----LTASGLQARL--ALP--WE--- 96 (381)
T ss_dssp SCHHHHHHHTTCCCCS-SEEEESSCTTSTTTGGGBT--TBEEEEEECBHHHHHH----HHHTTCCCEE--CCG--GG---
T ss_pred CChHHHHHHHHHHHhC-CcEEEecCCCCccccccCC--CCceEEEeCcHHHHHH----HHHcCCCccc--cCC--cc---
Confidence 5699999999887654 5999999999987766652 2467776444433333 7778887532 111 11
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....||.|++-.|=+ +...+ -...|..+...|++||.|+.+
T Consensus 97 ---------------~~~~~~d~v~~~~Pk~------------------k~~~~---~~~~l~~~~~~l~~g~~i~~~ 138 (381)
T 3dmg_A 97 ---------------AAAGAYDLVVLALPAG------------------RGTAY---VQASLVAAARALRMGGRLYLA 138 (381)
T ss_dssp ---------------SCTTCEEEEEEECCGG------------------GCHHH---HHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------CCcCCCCEEEEECCcc------------------hhHHH---HHHHHHHHHHhCCCCCEEEEE
Confidence 1246899999887721 11111 133577788889999998865
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=90.37 E-value=0.78 Score=40.39 Aligned_cols=133 Identities=16% Similarity=0.212 Sum_probs=71.7
Q ss_pred CCCeEEeecC-CCchHHHHHHHhC---CCEEEEEeCChhH-HHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACS-APGGKTCHLLEIA---DIKLISVDNNLSR-LNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlca-g~G~kt~~la~~~---~~~v~avD~~~~r-l~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|.++|=.|+ |+|+.+.++++.+ +.+|+.+|.++.. ++.+. +..+.++.++.+|..+... ..+. . ..
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~Dv~~~~~v~~~~-~---~~ 78 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT---DRLPAKAPLLELDVQNEEHLASLA-G---RV 78 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH---TTSSSCCCEEECCTTCHHHHHHHH-H---HH
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH---HhcCCCceEEEccCCCHHHHHHHH-H---HH
Confidence 3678888888 4888988888754 3699999998765 33332 2334456788889887541 0000 0 00
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...+. ....+|.++.++-....... ........+.++.... ..-...+++.+.+.++++|++|+.+
T Consensus 79 ~~~~g--~~~~iD~lv~nAg~~~~~~~--~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (269)
T 2h7i_A 79 TEAIG--AGNKLDGVVHSIGFMPQTGM--GINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD 148 (269)
T ss_dssp HHHHC--TTCCEEEEEECCCCCCGGGS--TTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHhC--CCCCceEEEECCccCccccc--cccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence 00000 01278999987643210000 0000112233333222 2223456777888887788888764
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.37 E-value=1.5 Score=38.88 Aligned_cols=60 Identities=7% Similarity=0.131 Sum_probs=42.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ |+.+.++++.+ +.+|+.+|. ...++.+.+.+...+..+.++.+|..+..
T Consensus 30 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 92 (273)
T 3uf0_A 30 AGRTAVVTGAG-SGIGRAIAHGYARAGAHVLAWGR-TDGVKEVADEIADGGGSAEAVVADLADLE 92 (273)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEES-STHHHHHHHHHHTTTCEEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEcC-HHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 36678877765 66777777654 369999994 45566666666666666888899988754
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=90.36 E-value=2.3 Score=37.70 Aligned_cols=58 Identities=7% Similarity=0.014 Sum_probs=43.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCCh-hHHHHHHHHHH-HcCCceEEEecCccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNL-SRLNMISENLK-RLNLKATLILSDISK 191 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~-~rl~~l~~n~~-~~g~~v~~~~~D~~~ 191 (329)
|.++|=.|+ +|+.+.++++.+ +.+|+.++.+. ..++.+.+.+. ..+..+.++.+|.++
T Consensus 23 ~k~~lVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~ 85 (288)
T 2x9g_A 23 APAAVVTGA-AKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTN 85 (288)
T ss_dssp CCEEEETTC-SSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSC
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCC
Confidence 556776665 467887777654 36999999998 88877777765 556568888999887
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=1.3 Score=38.77 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=70.5
Q ss_pred CCCeEEeecCC-CchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSA-PGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag-~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.+||=.|++ +|+.+.++++.+ +.+|+.++.++..-+.+++..+..+ .+.++.+|..+... ..+. . ...
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~v~~~~-~---~~~ 81 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDALF-A---GVK 81 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHHH-H---HHH
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CcEEEECCCCCHHHHHHHH-H---HHH
Confidence 36688888886 388888887654 3699999998863333333333333 26778899887541 0000 0 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
. ..+..|.++.++-......+. .| ....+.++.... ..-...+++.+.+.++.+|++|+.+.
T Consensus 82 ~-----~~g~iD~lv~~Ag~~~~~~~~-~~--~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 147 (261)
T 2wyu_A 82 E-----AFGGLDYLVHAIAFAPREAME-GR--YIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (261)
T ss_dssp H-----HHSSEEEEEECCCCCCHHHHS-SC--GGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred H-----HcCCCCEEEECCCCCCcccCC-CC--cccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 0 013689999877432210000 00 011223332222 22334566777777766788887643
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.28 E-value=1.2 Score=38.42 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.++.+||=.|+ +|+.+.++++.+ +.+|+.++.+...++.+.+.+. -.+.+...|..+... +. .
T Consensus 12 ~~~k~vlVTGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~--~~--------~ 77 (249)
T 3f9i_A 12 LTGKTSLITGA-SSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---DNYTIEVCNLANKEE--CS--------N 77 (249)
T ss_dssp CTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---SSEEEEECCTTSHHH--HH--------H
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---cCccEEEcCCCCHHH--HH--------H
Confidence 34667886665 566777777653 3699999999988877665543 347788888876431 00 0
Q ss_pred cccccCCCCCCEEEEccCCcc
Q psy15212 208 RFRFYKNKYFDRILADLPCTG 228 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg 228 (329)
.+. .....|.++.++-...
T Consensus 78 ~~~--~~~~id~li~~Ag~~~ 96 (249)
T 3f9i_A 78 LIS--KTSNLDILVCNAGITS 96 (249)
T ss_dssp HHH--TCSCCSEEEECCC---
T ss_pred HHH--hcCCCCEEEECCCCCC
Confidence 000 1246899998875443
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=90.28 E-value=1.3 Score=38.01 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=42.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHH-HHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENL-KRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~-~~~g~~v~~~~~D~~~~~ 193 (329)
+.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+ +..+.++.++.+|..+..
T Consensus 2 ~k~vlItGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 65 (250)
T 2cfc_A 2 SRVAIVTGA-SSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEG 65 (250)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHH
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 446676664 577888877654 369999999998887776665 333445788889988754
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.26 E-value=1.8 Score=39.48 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=44.6
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEe-CChhHHHHHHHHHH-HcCCceEEEecCcccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVD-NNLSRLNMISENLK-RLNLKATLILSDISKI 192 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD-~~~~rl~~l~~n~~-~~g~~v~~~~~D~~~~ 192 (329)
|..||=.|+ +|+++.++++.+ +.+|+.++ .++..++.+.+.+. ..+..+.++.+|..+.
T Consensus 46 ~k~~lVTGa-s~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~ 109 (328)
T 2qhx_A 46 VPVALVTGA-AKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNV 109 (328)
T ss_dssp CCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSS
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCc
Confidence 556776554 577888887654 36999999 99998888877776 5566688888998764
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.22 E-value=2.4 Score=36.37 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=43.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC-ceEEEecCc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL-KATLILSDI 189 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~-~v~~~~~D~ 189 (329)
.|.+||=.|+ +|+.+.++++.+ +.+|+.++.++..++.+.+.++..+. .+.++..|.
T Consensus 13 ~~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~ 73 (247)
T 3i1j_A 13 KGRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL 73 (247)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCT
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 3667776665 577887777654 36999999999999999998888764 367777776
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.20 E-value=1.4 Score=38.47 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
|.+||=.|+ +|+.+.++++.+ +.+|++++.++..++.+.+.+... +..+.++.+|..+..
T Consensus 7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (260)
T 2z1n_A 7 GKLAVVTAG-SSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPG 71 (260)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHH
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHH
Confidence 567777765 467777777653 369999999998888777766543 335778889988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 329 | ||||
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 2e-34 | |
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 3e-31 | |
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 6e-25 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 5e-12 | |
| d1wxxa2 | 318 | c.66.1.51 (A:65-382) Hypothetical protein TTHA1280 | 7e-09 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-08 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 8e-07 | |
| d2b78a2 | 317 | c.66.1.51 (A:69-385) Hypothetical protein SMu776, | 6e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 5e-05 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 8e-04 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 0.003 |
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 125 bits (314), Expect = 2e-34
Identities = 103/301 (34%), Positives = 170/301 (56%), Gaps = 24/301 (7%)
Query: 32 PIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTIIG 91
P W + +++ YP QW++I++ +++PP+ LRIN+ + S+ LL ++G++
Sbjct: 2 PSWLLKRLQKAYPE--QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHA 59
Query: 92 --PLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCH 149
P A++L TP + +P F +G+ ++QDA+AQ L ++G ++LD C+APGGKT H
Sbjct: 60 DYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH 119
Query: 150 LLEIADIK-LISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208
+LE+A +++VD + RL+ + +NLKRL +KAT+ D
Sbjct: 120 ILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYP---------------- 163
Query: 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG 268
++ + FDRIL D PC+ +GV+RR+PDI WLRR DI +L++ +IL+ +W LK G
Sbjct: 164 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 223
Query: 269 GKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN---KKQDYDGFFYSLFQ 325
G L++ TCS+ EE+ Q F + D+ + P ++ DGFFY+
Sbjct: 224 GTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLI 283
Query: 326 K 326
K
Sbjct: 284 K 284
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 117 bits (293), Expect = 3e-31
Identities = 80/323 (24%), Positives = 125/323 (38%), Gaps = 47/323 (14%)
Query: 29 WNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETT 88
Y + ++ + + I + K P R+N K ++ K L K G +
Sbjct: 12 LGYSKLFADRYFQLWGE--RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFK 69
Query: 89 IIGPL---AIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGG 145
+ P SI+ P+F G IQ+A++ LD + G V D +APGG
Sbjct: 70 RVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 146 KTCHLLEIADIKLISVDNNLS--RLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203
KT +L ++ + ++ RL NL RL + I
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-----------------VILF 172
Query: 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263
+++ N FD+IL D PCTGSG + +NP+ W R +DIK ++L +
Sbjct: 173 HSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLE 232
Query: 264 MLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPG------------------- 304
+LKPGG L++ TCSL EE+E N + G
Sbjct: 233 VLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNA 292
Query: 305 -QLLPTVNKKQDYDGFFYSLFQK 326
+L P + GFF + +K
Sbjct: 293 RRLYP---DVHETSGFFIAKIRK 312
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (248), Expect = 6e-25
Identities = 63/304 (20%), Positives = 109/304 (35%), Gaps = 52/304 (17%)
Query: 61 PLTLRINQRKTTLISYNKLLKKSGLETTIIG--------------------PLAIKLHTP 100
P +R+N KT K+ G P +
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 101 ISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHL--LEIADIKL 158
+ + P + G +QD A+ L A LLD G +V+DAC+APG KT HL L K+
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 159 ISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFD 218
+ D + RL ++ L R + + + D + + R+++
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEE-----------DFLAVSPSDPRYHE---VH 168
Query: 219 RILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKP-GGKLLFVTCS 277
IL D C+GSG+ R + P + ++ + + + P +L++ TCS
Sbjct: 169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 228
Query: 278 LWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNK---------------KQDYDGFFYS 322
L EE+E+ + + + RL P GFF +
Sbjct: 229 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 288
Query: 323 LFQK 326
+ ++
Sbjct: 289 VIER 292
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 63.4 bits (153), Expect = 5e-12
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 92 PLAIKLHTPISISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLL 151
I+ I + GF Q + + G VLD + GG H
Sbjct: 107 RTIIQEGRAKFIVDMRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAA 164
Query: 152 EIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211
++I +D + + EN K ++ + +I +
Sbjct: 165 IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMK------------FIVGSAFEEMEKLQ 212
Query: 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271
K + FD ++ D P + + D+K + + ++K GG L
Sbjct: 213 KKGEKFDIVVLDPPAFV-------------QHEKDLKAGLRAYFNVNFAGLNLVKDGGIL 259
Query: 272 LFVTCSLWFEESEEQAII 289
+ +CS + + +I
Sbjct: 260 VTCSCSQHVDLQMFKDMI 277
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Score = 53.7 bits (128), Expect = 7e-09
Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 27/158 (17%)
Query: 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISK 191
G LD S GG HL ++VD++ L EN +
Sbjct: 145 RGERALDVFSYAGGFALHLALGFREV-VAVDSSAEALRRAEENARLNG-----------L 192
Query: 192 INLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 251
N++ L + + + FD ++ D P G K D+++
Sbjct: 193 GNVRVLEANAFDLLRRLEKEGE--RFDLVVLDPPAFAKG-------------KKDVERAY 237
Query: 252 KYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAII 289
+ ++ K+LK GG L +CS E A++
Sbjct: 238 RAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV 275
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 3e-08
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 34/164 (20%)
Query: 116 IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSRLNMISE 173
+ ++DI G VL+A S GG + L + ++IS + ++ +
Sbjct: 82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK 141
Query: 174 NLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVR 233
N K L + N+ ++ DI+ T + K+ FD + D+
Sbjct: 142 NYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED----IKSLTFDAVALDMLN------- 190
Query: 234 RNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL-FVTC 276
P L + LK GG +V
Sbjct: 191 -----PH---------------VTLPVFYPHLKHGGVCAVYVVN 214
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.8 bits (110), Expect = 8e-07
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 36/193 (18%)
Query: 101 ISISKIPKFFNGFCSIQ------DAAAQLA--APLLDIRSGMYVLDACSAPGGKTCHLLE 152
I++SK+ F N ++ +AA++L A L G V D + G + L
Sbjct: 7 IALSKLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL 66
Query: 153 IADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212
+ ++I V+ + ++++ ENL K + + D+S+ N +
Sbjct: 67 LGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSR----------------- 109
Query: 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW----KMLKPG 268
D ++ + P G R++ D P+L + +I + + K
Sbjct: 110 ----VDIVIMNPPF---GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEH 162
Query: 269 GKLLFVTCSLWFE 281
G ++ + E
Sbjct: 163 GFVVTHRLTTKIE 175
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Score = 44.8 bits (105), Expect = 6e-06
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 24/174 (13%)
Query: 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192
G VL+ S + + SVD + + + +L
Sbjct: 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL---------DMA 195
Query: 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK 252
N + + +D+ R + +D I+ D P + R K ++ +SK
Sbjct: 196 NHQLVVMDVFDYFKYARR--HHLTYDIIIIDPPS-------------FARNKKEVFSVSK 240
Query: 253 YSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSPGQL 306
K++ ++L G ++ T + S+ + I K QL
Sbjct: 241 DYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQL 294
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.2 bits (96), Expect = 5e-05
Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 2/151 (1%)
Query: 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA-DIKLISVDNNLSRLNMISENL 175
+ AA L L +R VL +A G HL +I + + +V+ + + E +
Sbjct: 41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELV 100
Query: 176 KRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRN 235
+ N +L D SK ++ + A+ G V
Sbjct: 101 RERN-NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM 159
Query: 236 PDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266
+ + +++ K K + +K++K
Sbjct: 160 VKARSIDSTAEPEEVFKSVLKEMEGDFKIVK 190
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 29/184 (15%), Positives = 53/184 (28%), Gaps = 42/184 (22%)
Query: 110 FNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIA--DIKLISVDNNLSR 167
+N S AA I+ G VL A G H+ +I + K+ ++ +
Sbjct: 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRV 110
Query: 168 LNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227
L + ++ IL D +K + + D I D+
Sbjct: 111 LRELVPIVEERR-NIVPILGDATKPEEYRALVPK---------------VDVIFEDVAQP 154
Query: 228 GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQA 287
+++N LK GG + S + ++E
Sbjct: 155 TQAK------------------------ILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPE 190
Query: 288 IIFS 291
+F
Sbjct: 191 QVFR 194
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.7 bits (84), Expect = 0.003
Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 24/165 (14%)
Query: 113 FCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMIS 172
F L + + VL+ G + A ++ VD + +
Sbjct: 113 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAK 171
Query: 173 ENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVV 232
EN L+ I + + K R + +D IL D P G G
Sbjct: 172 ENQVLAGLEQAPI----------RWICEDAMKFIQREERRGST-YDIILTDPPKFGRG-- 218
Query: 233 RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277
++ +L + +L+ ++L P L +T
Sbjct: 219 ----------THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.87 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.84 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.83 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.72 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.67 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.66 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.64 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.64 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.64 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.62 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.62 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.6 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.59 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.58 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.58 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.57 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.57 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.53 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.5 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.49 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.49 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.48 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.48 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.48 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.48 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.45 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.44 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.43 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.42 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.41 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.41 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.4 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.39 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.39 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.38 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.38 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.38 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.38 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.37 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.37 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.37 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.35 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.29 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.28 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.27 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.27 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.26 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.26 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.25 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.24 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.23 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.22 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.21 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.21 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.18 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.17 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.16 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.16 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.12 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.09 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.09 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.08 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.08 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 99.07 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 99.07 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.05 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.01 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.99 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.97 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.91 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.88 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.86 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.63 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.58 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.58 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.57 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.54 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.53 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.49 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.44 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.3 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.27 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.26 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.25 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.21 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 98.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.93 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.8 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.73 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.62 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.61 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.58 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.55 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.55 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.54 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.48 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.44 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.36 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.33 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.33 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.27 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 97.16 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.13 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.97 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.88 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.85 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.84 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.72 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.58 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.57 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.55 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.4 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.32 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.26 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.12 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.08 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.76 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.6 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.58 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.44 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.17 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.16 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.01 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.97 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.85 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.66 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.52 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.4 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.4 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.39 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.36 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.35 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.92 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.65 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.59 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.57 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.51 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.97 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.9 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.89 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 92.08 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 92.01 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.85 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.7 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.68 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 91.5 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 91.41 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.35 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.12 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 91.03 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.66 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.96 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 89.65 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 89.28 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.24 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 89.16 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 89.14 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.87 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 88.83 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 88.65 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.91 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 87.85 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 86.72 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 86.66 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 86.38 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 86.31 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 85.81 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 85.48 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 84.76 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.67 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.66 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 84.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.75 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 83.42 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.47 | |
| d1qo0d_ | 189 | Positive regulator of the amidase operon AmiR {Pse | 80.3 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 80.14 |
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-70 Score=506.90 Aligned_cols=274 Identities=38% Similarity=0.688 Sum_probs=252.3
Q ss_pred CcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEe--CCceEEEcCCCCCCCCcc
Q psy15212 31 YPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHTPISISKIPK 108 (329)
Q Consensus 31 ~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 108 (329)
||.||+++|.+.||+ +++++++++++++|+|+|||++|++++++.+.|.+.|+...+. .++++.+..+..+..++.
T Consensus 1 HP~WLv~~~~~~~ge--e~~~l~~a~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~~~~p~~l~l~~~~~l~~~~~ 78 (284)
T d1sqga2 1 HPSWLLKRLQKAYPE--QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPG 78 (284)
T ss_dssp SCHHHHHHHHHHCTT--THHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTT
T ss_pred CcHHHHHHHHHHCHH--HHHHHHHHCCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeecCCCCccceeccccchhhChh
Confidence 799999999999998 7999999999999999999999999999999999999987764 578999998888999999
Q ss_pred cccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceE-EEe
Q psy15212 109 FFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKAT-LIL 186 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~-~~~ 186 (329)
|.+|++++||++||+++.+|++++|++|||+||||||||+++++++. +.|+|+|+++.|++.++++++++|+++. +..
T Consensus 79 ~~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~ 158 (284)
T d1sqga2 79 FEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG 158 (284)
T ss_dssp GGGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEEC
T ss_pred hhccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeec
Confidence 99999999999999999999999999999999999999999999877 8999999999999999999999999844 444
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 266 (329)
.|..... ......||+||+||||||+|+++|+|+++|.+++.++..+.++|.+||.+|+++||
T Consensus 159 ~~~~~~~-----------------~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk 221 (284)
T d1sqga2 159 DGRYPSQ-----------------WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK 221 (284)
T ss_dssp CTTCTHH-----------------HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE
T ss_pred cccccch-----------------hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC
Confidence 4433222 12346899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC------CcccCCCCCCCCCCeEEEEEEEe
Q psy15212 267 PGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP------GQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 267 pgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~------~~~~p~~~~~~~~~gff~a~l~k 326 (329)
|||+|||||||++++|||+||++||++|+++++++.. .+++|+. +++||||+|+|+|
T Consensus 222 ~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~~~~~~~~~~~~~P~~---~~~dGFF~A~l~K 284 (284)
T d1sqga2 222 TGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGA---EEGDGFFYAKLIK 284 (284)
T ss_dssp EEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECSSBCSSSBSEEECCCT---TSCCSEEEEEEEC
T ss_pred CCceEEEeeecCchhhCHHHHHHHHHhCCCcEEecCCCCCCCcEEECCCC---CCcccEEEEEEEC
Confidence 9999999999999999999999999999999988642 3688998 9999999999987
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.7e-68 Score=498.57 Aligned_cols=277 Identities=31% Similarity=0.438 Sum_probs=246.6
Q ss_pred hhcCCcHHHHHHHHHhCCChHHHHHHHHHhCCCCCeeEEEcCCCCCHHHHHHHHHHCCCeeEEe--CCceEEEcC-CCCC
Q psy15212 27 SYWNYPIWWINQVKITYPNFFQWKNILDVGHKKPPLTLRINQRKTTLISYNKLLKKSGLETTII--GPLAIKLHT-PISI 103 (329)
Q Consensus 27 ~~~s~P~w~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~-~~~~ 103 (329)
.+|+||+||+++|.+.||+ +++++++++++|+|+|+|||++|++++++++.|+++|+..++. .++++.+.. +.++
T Consensus 10 ~~~~~p~wl~~~~~~~~Ge--e~~~l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~l 87 (313)
T d1ixka_ 10 LRLGYSKLFADRYFQLWGE--RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 87 (313)
T ss_dssp HHTTCCHHHHHHHHHHHTT--HHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCG
T ss_pred HHcCCCHHHHHHHHHHhhH--HHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEECCCCcchhhhccCCCcc
Confidence 6899999999999999998 7899999999999999999999999999999999999998775 467888764 4578
Q ss_pred CCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 104 SKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++|++|++++||++||+++.+|++++|++|||+||||||||+++++.++ +.|+|+|+++.|++.+++|++++|+.
T Consensus 88 ~~~~~~~~G~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~ 167 (313)
T d1ixka_ 88 TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL 167 (313)
T ss_dssp GGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred ccCHhhhhceEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999887 79999999999999999999999997
Q ss_pred -eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH
Q psy15212 182 -ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN 260 (329)
Q Consensus 182 -v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~ 260 (329)
+.++..|...+. .....||+||+||||||+|+++++|+++|.++.+++..+.++|.+||.+
T Consensus 168 ~i~~~~~d~~~~~------------------~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~ 229 (313)
T d1ixka_ 168 NVILFHSSSLHIG------------------ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK 229 (313)
T ss_dssp SEEEESSCGGGGG------------------GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc------------------cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 777788877654 1346899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCEEEEEcCCCCccccHHHHHHHHhhCCCcEEecCC---------------------CcccCCCCCCCCCCeE
Q psy15212 261 LWKMLKPGGKLLFVTCSLWFEESEEQAIIFSKNHKDSIRLNSP---------------------GQLLPTVNKKQDYDGF 319 (329)
Q Consensus 261 a~~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~~~~~~~~~~~---------------------~~~~p~~~~~~~~~gf 319 (329)
|+++|||||+|||||||++++|||+||++||+++ +++.++.. .+++|+. +++|||
T Consensus 230 a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGf 305 (313)
T d1ixka_ 230 GLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF-DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDV---HETSGF 305 (313)
T ss_dssp HHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS-SEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTT---SSSCSE
T ss_pred hhheeCCCcEEEEeeccCChHhHHHHHHHHHhcC-CCEEeecccCCccccCccccccccccCCcEEECCCC---CCcccE
Confidence 9999999999999999999999999999999987 56666531 1478887 899999
Q ss_pred EEEEEEec
Q psy15212 320 FYSLFQKR 327 (329)
Q Consensus 320 f~a~l~k~ 327 (329)
|+|+|+|.
T Consensus 306 FiA~l~Kv 313 (313)
T d1ixka_ 306 FIAKIRKL 313 (313)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 99999984
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-59 Score=433.85 Aligned_cols=250 Identities=24% Similarity=0.340 Sum_probs=204.5
Q ss_pred CCCeeEEEcCCCCCHHHHHHHHHHCCCeeEE--------------------eCCceEEEcCCCCCCCCcccccceEEEec
Q psy15212 59 KPPLTLRINQRKTTLISYNKLLKKSGLETTI--------------------IGPLAIKLHTPISISKIPKFFNGFCSIQD 118 (329)
Q Consensus 59 ~~p~~~RvN~~k~~~~~~~~~l~~~g~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd 118 (329)
+.|+|+||||+|++++++.+.|+++|+...+ +.|+++.++...++..+++|++|++++||
T Consensus 1 ~lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD 80 (293)
T d2b9ea1 1 QLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQD 80 (293)
T ss_dssp CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcC
Confidence 3689999999999999999999999988643 34577888888889999999999999999
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchh
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLK 195 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~ 195 (329)
.+||+++.+|++++|++|||+||||||||+++|++++ ++|+|+|+++.|++.+++|++++|+. +.+...|+.....
T Consensus 81 ~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~- 159 (293)
T d2b9ea1 81 RASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP- 159 (293)
T ss_dssp TGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT-
T ss_pred CcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc-
Confidence 9999999999999999999999999999999999876 79999999999999999999999998 8899999887540
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChh--HHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN--DIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~--~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.+ ...+.||+||+||||||+|+++++|+.+|.++.+ ++..+...|+++|.+|+. ++|||+|||
T Consensus 160 ---------~~-----~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvY 224 (293)
T d2b9ea1 160 ---------SD-----PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVY 224 (293)
T ss_dssp ---------TC-----GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEE
T ss_pred ---------cc-----cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEEE
Confidence 00 0125799999999999999999999999877554 478999999999999995 799999999
Q ss_pred EcCCCCccccHHHHHHHHhhCCCc-EEecCC-----------------CcccCCCCCCCCCCeEEEEEEEec
Q psy15212 274 VTCSLWFEESEEQAIIFSKNHKDS-IRLNSP-----------------GQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 274 sTCS~~~~Ene~vv~~~l~~~~~~-~~~~~~-----------------~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
||||++++|||+||++||++|+++ ++.+.. .+++|+. +++||||+|+|+|.
T Consensus 225 sTCSl~~~ENe~vV~~~L~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~---~~~dGfFiA~L~ki 293 (293)
T d2b9ea1 225 STCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPET---TLSSGFFVAVIERV 293 (293)
T ss_dssp EESCCCGGGTHHHHHHHHTTSTTTEEECCCCTTCCCBCCSSSTTGGGSEEECHHH---HSSCSEEEEEEEEC
T ss_pred eeccCChhHhHHHHHHHHHhCCCCEEeccCcccccccccccCCCCCCEEEECCCC---CCccCEEEEEEEEC
Confidence 999999999999999999999974 544421 1356766 79999999999984
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.1e-22 Score=188.38 Aligned_cols=164 Identities=19% Similarity=0.156 Sum_probs=129.8
Q ss_pred CCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eE
Q psy15212 105 KIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-AT 183 (329)
Q Consensus 105 ~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~ 183 (329)
-...++.|.+..|.....+.. ..+|++|||+|||+|++++++|.. +.+|+++|+|+.+++.+++|++++|+. ++
T Consensus 122 l~~~~~tG~flDqr~~r~~~~----~~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~ 196 (318)
T d1wxxa2 122 LRAGQKTGAYLDQRENRLYME----RFRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVR 196 (318)
T ss_dssp CSTTSCCCCCGGGHHHHHHGG----GCCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEE
T ss_pred chhccccccchhhhhhHHHHH----HhCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcc
Confidence 346678899999988765432 336899999999999999998853 369999999999999999999999997 89
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++.+|+.+.. ..+ . ...++||+|++||||++.+. .++......|.+++..+.+
T Consensus 197 ~i~~d~~~~~-~~~------------~-~~~~~fD~Vi~DpP~~~~~~-------------~~~~~~~~~~~~l~~~a~~ 249 (318)
T d1wxxa2 197 VLEANAFDLL-RRL------------E-KEGERFDLVVLDPPAFAKGK-------------KDVERAYRAYKEVNLRAIK 249 (318)
T ss_dssp EEESCHHHHH-HHH------------H-HTTCCEEEEEECCCCSCCST-------------TSHHHHHHHHHHHHHHHHH
T ss_pred eeeccHHHHh-hhh------------H-hhhcCCCEEEEcCCccccch-------------HHHHHHHHHHHHHHHHHHH
Confidence 9999987753 110 0 13468999999999997542 3466777788999999999
Q ss_pred cCCCCCEEEEEcCC--CCccccHHHHHHHHhhC-CCcEEe
Q psy15212 264 MLKPGGKLLFVTCS--LWFEESEEQAIIFSKNH-KDSIRL 300 (329)
Q Consensus 264 ~LkpgG~lvysTCS--~~~~Ene~vv~~~l~~~-~~~~~~ 300 (329)
+|+|||.|+|+||| +..++-+++|....... ..++.+
T Consensus 250 lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~ 289 (318)
T d1wxxa2 250 LLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 289 (318)
T ss_dssp TEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999 55666677777665543 345544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=3.3e-21 Score=178.87 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=129.5
Q ss_pred CcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eE
Q psy15212 106 IPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--AT 183 (329)
Q Consensus 106 ~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~ 183 (329)
...++.|.+..|.....++...+ ++|++|||+|||+|++++++|.....+|+++|+|+.+++.+++|++.+|+. ++
T Consensus 121 ~~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~ 198 (324)
T d2as0a2 121 MRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMK 198 (324)
T ss_dssp SSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEE
T ss_pred ccccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccce
Confidence 34568899999999988887664 579999999999999999999754369999999999999999999999995 78
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++++|+.+.. ..+ . ..+.+||+|++||||++.+ ........+.+.+++..|.+
T Consensus 199 ~~~~d~~~~~-~~~------------~-~~~~~fD~Vi~DpP~~~~~-------------~~~~~~~~~~y~~l~~~a~~ 251 (324)
T d2as0a2 199 FIVGSAFEEM-EKL------------Q-KKGEKFDIVVLDPPAFVQH-------------EKDLKAGLRAYFNVNFAGLN 251 (324)
T ss_dssp EEESCHHHHH-HHH------------H-HTTCCEEEEEECCCCSCSS-------------GGGHHHHHHHHHHHHHHHHT
T ss_pred eeechhhhhh-HHH------------H-hccCCCCchhcCCccccCC-------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999987642 100 0 1356899999999998542 34556667778999999999
Q ss_pred cCCCCCEEEEEcCCCCc--cccHHHHHHHHhhC-CCcEEe
Q psy15212 264 MLKPGGKLLFVTCSLWF--EESEEQAIIFSKNH-KDSIRL 300 (329)
Q Consensus 264 ~LkpgG~lvysTCS~~~--~Ene~vv~~~l~~~-~~~~~~ 300 (329)
+|+|||+|+|+|||-+- ++-.++|.....+. ...+++
T Consensus 252 ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 252 LVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp TEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred HcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 99999999999999654 34445555554433 234443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.83 E-value=4.9e-21 Score=176.99 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=120.2
Q ss_pred CCCCcccccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 103 ISKIPKFFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 103 ~~~~~~~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
+.-...++.|.|..|.......+.. ..+|.+|||+|||+|+++++++......|+++|+|+..++.+++|++.+|+.
T Consensus 117 vdl~~g~ktGlflDqR~~r~~l~~~--~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~ 194 (317)
T d2b78a2 117 VFLNDGLMTGIFLDQRQVRNELING--SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM 194 (317)
T ss_dssp ECSSSSSCCSSCGGGHHHHHHHHHT--TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred EEcccccccCCcHHHHHHHHHHHHH--hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccC
Confidence 3445677889998887764433322 3568999999999999999988643369999999999999999999999984
Q ss_pred --eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH
Q psy15212 182 --ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259 (329)
Q Consensus 182 --v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~ 259 (329)
++++.+|+.+.- +.+. ...++||.|++|||+.+.. .+.+....+.+.+++.
T Consensus 195 ~~~~~i~~d~~~~l-~~~~-------------~~~~~fD~Ii~DPP~f~~~-------------~~~~~~~~~~~~~L~~ 247 (317)
T d2b78a2 195 ANHQLVVMDVFDYF-KYAR-------------RHHLTYDIIIIDPPSFARN-------------KKEVFSVSKDYHKLIR 247 (317)
T ss_dssp TTEEEEESCHHHHH-HHHH-------------HTTCCEEEEEECCCCC------------------CCCCHHHHHHHHHH
T ss_pred cceEEEEccHHHHH-HHHH-------------hhcCCCCEEEEcChhhccc-------------hhHHHHHHHHHHHHHH
Confidence 789999987642 1110 1346899999999987531 1122234445778999
Q ss_pred HHHhcCCCCCEEEEEcCCCC--ccccHHHHHHHHhhC
Q psy15212 260 NLWKMLKPGGKLLFVTCSLW--FEESEEQAIIFSKNH 294 (329)
Q Consensus 260 ~a~~~LkpgG~lvysTCS~~--~~Ene~vv~~~l~~~ 294 (329)
.|+++|+|||.|+|||||-+ .++-+..|.....+.
T Consensus 248 ~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~ 284 (317)
T d2b78a2 248 QGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQ 284 (317)
T ss_dssp HHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999944 444456666666543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.72 E-value=1.1e-17 Score=153.03 Aligned_cols=163 Identities=19% Similarity=0.134 Sum_probs=118.5
Q ss_pred CCCcccccceEEEechhHHHHhhhcC-CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-
Q psy15212 104 SKIPKFFNGFCSIQDAAAQLAAPLLD-IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK- 181 (329)
Q Consensus 104 ~~~~~~~~G~~~~Qd~~s~l~~~~l~-~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~- 181 (329)
.-...++.|.|.-|......+...+. ..+|.+|||+|||+|++++++|. .+++|++||.|+..++.+++|++.+|+.
T Consensus 103 ~~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~ 181 (309)
T d2igta1 103 RFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQ 181 (309)
T ss_dssp ECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred eccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccC
Confidence 34566788999999999887776553 45688999999999999999986 4569999999999999999999999884
Q ss_pred --eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHH
Q psy15212 182 --ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILN 259 (329)
Q Consensus 182 --v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~ 259 (329)
++++++|+.++- ... .....+||+|++|||+.+.|.-. ..| .+...+..++.
T Consensus 182 ~~~~~i~~D~~~~l-~~~-------------~~~~~~fD~IilDPP~f~~~~~~----~~~--------~~~~~~~~l~~ 235 (309)
T d2igta1 182 APIRWICEDAMKFI-QRE-------------ERRGSTYDIILTDPPKFGRGTHG----EVW--------QLFDHLPLMLD 235 (309)
T ss_dssp SCEEEECSCHHHHH-HHH-------------HHHTCCBSEEEECCCSEEECTTC----CEE--------EHHHHHHHHHH
T ss_pred CcEEEEeCCHHHhH-HHH-------------hhcCCCCCEEEECCCcccccccc----hhH--------HHHHHHHHHHH
Confidence 789999998753 110 01246899999999988665311 111 12223456788
Q ss_pred HHHhcCCCCCEEEEEcC-CC--CccccHHHHHHHHhh
Q psy15212 260 NLWKMLKPGGKLLFVTC-SL--WFEESEEQAIIFSKN 293 (329)
Q Consensus 260 ~a~~~LkpgG~lvysTC-S~--~~~Ene~vv~~~l~~ 293 (329)
.+.++|+|||.++++|| |. .+.+-++.+...+..
T Consensus 236 ~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ 272 (309)
T d2igta1 236 ICREILSPKALGLVLTAYSIRASFYSMHELMRETMRG 272 (309)
T ss_dssp HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 89999999997666655 42 233334445554443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.4e-16 Score=143.30 Aligned_cols=120 Identities=21% Similarity=0.383 Sum_probs=98.3
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEe
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLIL 186 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~ 186 (329)
.+.-.+..+.+.+++..++++||++|||+|||+|+.|.++|+.++ ++|+++|+++++++.+++|+++.|+. +.+..
T Consensus 82 r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~ 161 (266)
T d1o54a_ 82 RRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV 161 (266)
T ss_dssp C-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC
T ss_pred CCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe
Confidence 344445556677788899999999999999999999999999875 89999999999999999999999985 67777
Q ss_pred cCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCC
Q psy15212 187 SDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLK 266 (329)
Q Consensus 187 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lk 266 (329)
.|.... +....||.|++|.|.. | +.|+++.+.||
T Consensus 162 ~d~~~~-------------------~~~~~~D~V~~d~p~p------------~---------------~~l~~~~~~LK 195 (266)
T d1o54a_ 162 RDISEG-------------------FDEKDVDALFLDVPDP------------W---------------NYIDKCWEALK 195 (266)
T ss_dssp CCGGGC-------------------CSCCSEEEEEECCSCG------------G---------------GTHHHHHHHEE
T ss_pred cccccc-------------------ccccceeeeEecCCCH------------H---------------HHHHHHHhhcC
Confidence 776432 2356799999998833 1 36899999999
Q ss_pred CCCEEE-EEcC
Q psy15212 267 PGGKLL-FVTC 276 (329)
Q Consensus 267 pgG~lv-ysTC 276 (329)
|||+|+ |+.|
T Consensus 196 pGG~lv~~~P~ 206 (266)
T d1o54a_ 196 GGGRFATVCPT 206 (266)
T ss_dssp EEEEEEEEESS
T ss_pred CCCEEEEEeCc
Confidence 999986 5554
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=1.6e-16 Score=136.07 Aligned_cols=132 Identities=18% Similarity=0.258 Sum_probs=104.8
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccch
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINL 194 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~ 194 (329)
|.++++....+.+.++++|||+|||+|..+.+++...+ +|+++|+|+.+++.+++|++.+++. +++..+|..+..
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~- 115 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV- 115 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh-
Confidence 77888888889999999999999999999999998654 9999999999999999999999875 688889987532
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.++.||+|++|||+.. .. ....++++.+.++|+|||+|+.+
T Consensus 116 ------------------~~~~fD~Ii~~~p~~~--------------~~-------~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 116 ------------------KDRKYNKIITNPPIRA--------------GK-------EVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp ------------------TTSCEEEEEECCCSTT--------------CH-------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------ccCCceEEEEcccEEe--------------cc-------hhhhhHHHHHHHhcCcCcEEEEE
Confidence 4578999999999641 11 12346899999999999998765
Q ss_pred cCCCCccccHHHHHHHHhh
Q psy15212 275 TCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~ 293 (329)
... ..+...+..++++
T Consensus 157 ~~~---~~~~~~~~~~l~~ 172 (194)
T d1dusa_ 157 IQT---KQGAKSLAKYMKD 172 (194)
T ss_dssp EES---THHHHHHHHHHHH
T ss_pred EeC---cCCHHHHHHHHHH
Confidence 433 2233445555554
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.67 E-value=1.5e-16 Score=135.43 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=103.3
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
++...++.. .+++++|++|||+|||+|..+..+|... ++|+|+|+++.+++.+++|++++|+. ++++++|+.+..
T Consensus 19 ~eir~~il~-~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~- 95 (186)
T d1l3ia_ 19 MEVRCLIMC-LAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL- 95 (186)
T ss_dssp HHHHHHHHH-HHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-
T ss_pred HHHHHHHHH-hcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-
Confidence 444455554 5789999999999999999999998754 59999999999999999999999984 899999987754
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....||.|+++.+-. . ..++++.+.+.|||||+++++
T Consensus 96 -----------------~~~~~~D~v~~~~~~~---------------~----------~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 96 -----------------CKIPDIDIAVVGGSGG---------------E----------LQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp -----------------TTSCCEEEEEESCCTT---------------C----------HHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------cccCCcCEEEEeCccc---------------c----------chHHHHHHHHHhCcCCEEEEE
Confidence 2346899999876411 0 235789999999999999977
Q ss_pred cCCCCccccHHHHHHHHhhC
Q psy15212 275 TCSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~ 294 (329)
..+ .|+...+..+++.+
T Consensus 134 ~~~---~e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 134 AIL---LETKFEAMECLRDL 150 (186)
T ss_dssp ECB---HHHHHHHHHHHHHT
T ss_pred eec---cccHHHHHHHHHHc
Confidence 543 46666666666665
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.66 E-value=1.5e-16 Score=141.71 Aligned_cols=112 Identities=24% Similarity=0.361 Sum_probs=86.9
Q ss_pred EEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCc
Q psy15212 114 CSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDI 189 (329)
Q Consensus 114 ~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~ 189 (329)
+|..|.+.+ ...++++||++|||+|||+|+.|..+|+.++ ++|+++|+++.+++.+++|+++++. . +++..+|+
T Consensus 69 iypkD~~~I--i~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di 146 (250)
T d1yb2a1 69 ISEIDASYI--IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146 (250)
T ss_dssp --------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT
T ss_pred cCHHHHHHH--HHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 344444433 4578999999999999999999999998754 7999999999999999999999754 3 89999998
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCC
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGG 269 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG 269 (329)
.+.. .+..||.|++|.|.. | +.|+++.+.|||||
T Consensus 147 ~~~~-------------------~~~~fD~V~ld~p~p------------~---------------~~l~~~~~~LKpGG 180 (250)
T d1yb2a1 147 ADFI-------------------SDQMYDAVIADIPDP------------W---------------NHVQKIASMMKPGS 180 (250)
T ss_dssp TTCC-------------------CSCCEEEEEECCSCG------------G---------------GSHHHHHHTEEEEE
T ss_pred eccc-------------------ccceeeeeeecCCch------------H---------------HHHHHHHHhcCCCc
Confidence 7643 457899999998843 2 35899999999999
Q ss_pred EEEE
Q psy15212 270 KLLF 273 (329)
Q Consensus 270 ~lvy 273 (329)
+|+.
T Consensus 181 ~lv~ 184 (250)
T d1yb2a1 181 VATF 184 (250)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=1.3e-15 Score=133.82 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=109.9
Q ss_pred HHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCcccc
Q psy15212 121 AQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKI 192 (329)
Q Consensus 121 s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~ 192 (329)
|.+++.++ .++||++|||+|||+|..+.++|+..+ |+|+|+|+++.+++.+++++++.+. +..+..|+...
T Consensus 56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~-~~~i~~d~~~~ 134 (227)
T d1g8aa_ 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN-IVPILGDATKP 134 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT-EEEEECCTTCG
T ss_pred cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCC-ceEEEEECCCc
Confidence 56666554 488999999999999999999999875 8999999999999999999876543 55667787765
Q ss_pred chhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 193 NLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
.. +. .....+|.|++|.+|.. .+..+++++.++|||||+++
T Consensus 135 ~~--------------~~-~~~~~vD~i~~d~~~~~------------------------~~~~~l~~~~~~LkpgG~lv 175 (227)
T d1g8aa_ 135 EE--------------YR-ALVPKVDVIFEDVAQPT------------------------QAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp GG--------------GT-TTCCCEEEEEECCCSTT------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred cc--------------cc-ccccceEEEEEEccccc------------------------hHHHHHHHHHHhcccCCeEE
Confidence 40 01 12367999999998762 13457999999999999998
Q ss_pred EEc---CCCCccccHHHHHHHHhhC-CCcEEecCCCcccCCCCCCCCCCeEEEEEEEe
Q psy15212 273 FVT---CSLWFEESEEQAIIFSKNH-KDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQK 326 (329)
Q Consensus 273 ysT---CS~~~~Ene~vv~~~l~~~-~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~k 326 (329)
+++ |.-...+.+.+.+...+.. .+|++++. ..+.|-. .+.|+...||
T Consensus 176 i~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~-i~L~p~~------~~H~~vv~rK 226 (227)
T d1g8aa_ 176 IAVKSRSIDVTKEPEQVFREVERELSEYFEVIER-LNLEPYE------KDHALFVVRK 226 (227)
T ss_dssp EEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE-EECTTTS------SSEEEEEEEC
T ss_pred EEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE-EcCCCCC------CceEEEEEEe
Confidence 763 4444444445444332211 25665542 1233432 2456666555
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=3.5e-16 Score=133.93 Aligned_cols=149 Identities=19% Similarity=0.271 Sum_probs=117.6
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+..++.+++|+.|||+|||+||.|.++++..+ ++|+|+|.++.+++.+++++++++-.+.++++++.++.. ..
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~--~~---- 88 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADF--LL---- 88 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHH--HH----
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHH--HH----
Confidence 35567899999999999999999999999876 899999999999999999999988779999998877541 00
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEE 282 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~E 282 (329)
..+..+.||.||.|-.||+.-. +...+-...+.+.|..+.++|+|||+++..| ++..|
T Consensus 89 -------~~~~~~~vdgIl~DlGvSs~Ql-------------d~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~--f~s~E 146 (192)
T d1m6ya2 89 -------KTLGIEKVDGILMDLGVSTYQL-------------KGENRELENLKEFLKKAEDLLNPGGRIVVIS--FHSLE 146 (192)
T ss_dssp -------HHTTCSCEEEEEEECSCCHHHH-------------HTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE--SSHHH
T ss_pred -------HHcCCCCcceeeeccchhHhhh-------------hhhhccchhHHHHHHHHHHhcCCCCeeeeec--cccHH
Confidence 1123478999999999985311 1122334456788999999999999999754 56666
Q ss_pred cHHHHHHHHhhCCCcEEec
Q psy15212 283 SEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 283 ne~vv~~~l~~~~~~~~~~ 301 (329)
+ ..|.++.+.++.+.++.
T Consensus 147 d-r~vk~~f~~~~~~~~i~ 164 (192)
T d1m6ya2 147 D-RIVKETFRNSKKLRILT 164 (192)
T ss_dssp H-HHHHHHHHHCSSEEESC
T ss_pred H-HHHHHHHhhccccccCC
Confidence 5 67888888888776653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=6.6e-16 Score=135.64 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=95.5
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYI 199 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~ 199 (329)
..+....++++||++|||+|||+|..+..+++.. ++|+|+|+|+.+++.+++++...++. +.++++|+.+.+
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~------ 77 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP------ 77 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC------
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccccccccccccccccc------
Confidence 3567778899999999999999999999999875 59999999999999999999999987 899999998865
Q ss_pred hhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 200 DINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 200 ~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.+++||.|++ .+++...|+ ...+|+++.++|||||++++++
T Consensus 78 ------------~~~~~fD~v~~------~~~l~~~~d----------------~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 78 ------------FPDDSFDIITC------RYAAHHFSD----------------VRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ------------SCTTCEEEEEE------ESCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------ccccccceeee------eceeecccC----------------HHHHHHHHHHeeCCCcEEEEEE
Confidence 35689999995 233332222 2467999999999999999864
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=1.5e-15 Score=136.01 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=97.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
+++|++|||+|||+|++++++|....++|+|+|+|+..++.+++|++.+|+. ++++++|+..+.
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------------- 170 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------------- 170 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------------
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--------------
Confidence 5789999999999999999999875579999999999999999999999996 899999998865
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE-cC--CCCccccH
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV-TC--SLWFEESE 284 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys-TC--S~~~~Ene 284 (329)
....||.|++|+|+++. ++|..|+++|++||.|.|. .| ....++..
T Consensus 171 -----~~~~~D~Ii~~~p~~~~--------------------------~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~ 219 (260)
T d2frna1 171 -----GENIADRILMGYVVRTH--------------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPF 219 (260)
T ss_dssp -----CCSCEEEEEECCCSSGG--------------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTH
T ss_pred -----cCCCCCEEEECCCCchH--------------------------HHHHHHHhhcCCCCEEEEEeccccccchhhHH
Confidence 34689999999997632 3577899999999988553 22 23344455
Q ss_pred HHHHHHHhhC
Q psy15212 285 EQAIIFSKNH 294 (329)
Q Consensus 285 ~vv~~~l~~~ 294 (329)
+.+..+....
T Consensus 220 e~~~~~~~~~ 229 (260)
T d2frna1 220 ETFKRITKEY 229 (260)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666666654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=7e-16 Score=138.17 Aligned_cols=138 Identities=20% Similarity=0.263 Sum_probs=105.7
Q ss_pred cccceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcC---Cc-e
Q psy15212 109 FFNGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLN---LK-A 182 (329)
Q Consensus 109 ~~~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g---~~-v 182 (329)
++.+.=.+..+.+.++...++++||++|||+|||+|+.|.++|...+ ++|+++|+++++++.+++|+++.+ .. +
T Consensus 73 ~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv 152 (264)
T d1i9ga_ 73 MPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW 152 (264)
T ss_dssp SCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE
T ss_pred ccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceE
Confidence 33444445556667778889999999999999999999999999865 899999999999999999999862 22 7
Q ss_pred EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH
Q psy15212 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW 262 (329)
Q Consensus 183 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~ 262 (329)
+++++|+.+.. +.++.||.|++|.|.- | +.+.++.
T Consensus 153 ~~~~~d~~~~~------------------~~~~~fDaV~ldlp~P------------~---------------~~l~~~~ 187 (264)
T d1i9ga_ 153 RLVVSDLADSE------------------LPDGSVDRAVLDMLAP------------W---------------EVLDAVS 187 (264)
T ss_dssp EEECSCGGGCC------------------CCTTCEEEEEEESSCG------------G---------------GGHHHHH
T ss_pred EEEeccccccc------------------ccCCCcceEEEecCCH------------H---------------HHHHHHH
Confidence 88999987654 3568899999998843 2 2588899
Q ss_pred hcCCCCCEEEEEcCCCCccccHHHHHHHHhh
Q psy15212 263 KMLKPGGKLLFVTCSLWFEESEEQAIIFSKN 293 (329)
Q Consensus 263 ~~LkpgG~lvysTCS~~~~Ene~vv~~~l~~ 293 (329)
+.|||||+++..+.+ .++-+..++.+-..
T Consensus 188 ~~LkpGG~lv~~~P~--i~Qv~~~~~~l~~~ 216 (264)
T d1i9ga_ 188 RLLVAGGVLMVYVAT--VTQLSRIVEALRAK 216 (264)
T ss_dssp HHEEEEEEEEEEESS--HHHHHHHHHHHHHH
T ss_pred hccCCCCEEEEEeCc--cChHHHHHHHHHHc
Confidence 999999988754332 23344444444334
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.3e-15 Score=135.56 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=105.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..+.+|||+|||+|..++.+|...+ .+|+|+|+|+..++.+++|+++++++ ++++.+|.....
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~--------------- 171 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL--------------- 171 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------------
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc---------------
Confidence 4456899999999999999999887 89999999999999999999999996 999999987642
Q ss_pred ccccCCCCCCEEEEccCCcccccc-------ccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVV-------RRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE 281 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~-------~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~ 281 (329)
.+.+||+|++||||-....+ +..|...+. . ...-....+++++.+.++|+|||.+++- +..
T Consensus 172 ----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~-~---g~dGl~~~~~i~~~a~~~L~~~G~l~lE---ig~- 239 (274)
T d2b3ta1 172 ----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALV-A---ADSGMADIVHIIEQSRNALVSGGFLLLE---HGW- 239 (274)
T ss_dssp ----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTB-C---HHHHTHHHHHHHHHHGGGEEEEEEEEEE---CCS-
T ss_pred ----CCCceeEEEecchhhhhhhhcccccccccchhhhcc-c---ccccchHHHHHHHHHHHhcCCCCEEEEE---ECc-
Confidence 34689999999999765433 333332221 1 1223345678999999999999999975 222
Q ss_pred ccHHHHHHHHhhC
Q psy15212 282 ESEEQAIIFSKNH 294 (329)
Q Consensus 282 Ene~vv~~~l~~~ 294 (329)
...+.|..+++++
T Consensus 240 ~q~~~v~~~l~~~ 252 (274)
T d2b3ta1 240 QQGEAVRQAFILA 252 (274)
T ss_dssp SCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHC
Confidence 3456667777665
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=3.2e-15 Score=129.66 Aligned_cols=134 Identities=22% Similarity=0.126 Sum_probs=101.6
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+.++||++|||+|||+|+.+.++|+..+ ++|+|+|+++.+++.++++.++.+ .+.++.+|+..+...
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d~~~~~~~----------- 119 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFDASKPWKY----------- 119 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSCTTCGGGT-----------
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-CceEEEeeccCcccc-----------
Confidence 5689999999999999999999999887 899999999999999999998865 478888998876410
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc---CCCCcccc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT---CSLWFEES 283 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT---CS~~~~En 283 (329)
......+|.|+.|.++.. .+..+++++.+.|||||++++++ |+-...+.
T Consensus 120 ----~~~~~~vd~v~~~~~~~~------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~ 171 (209)
T d1nt2a_ 120 ----SGIVEKVDLIYQDIAQKN------------------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEP 171 (209)
T ss_dssp ----TTTCCCEEEEEECCCSTT------------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCH
T ss_pred ----ccccceEEEEEecccChh------------------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCH
Confidence 011246777777765331 13457899999999999998764 55566666
Q ss_pred HHHHHHHHhhC-CCcEEec
Q psy15212 284 EEQAIIFSKNH-KDSIRLN 301 (329)
Q Consensus 284 e~vv~~~l~~~-~~~~~~~ 301 (329)
+.+.+...+.. .+|+.+.
T Consensus 172 ~~~~~~~~~~l~~gf~i~E 190 (209)
T d1nt2a_ 172 EEVFKSVLKEMEGDFKIVK 190 (209)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 77766665432 3566554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=3.8e-15 Score=132.84 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=104.2
Q ss_pred echhHHHHhhhcC--CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLD--IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~--~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~ 194 (329)
..++.+++..++. .++|++|||+|||+|..+..++++ +.+|+|+|+|+.+++.+++|++++|++++++.+|.....
T Consensus 103 ~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~- 180 (254)
T d2nxca1 103 HHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL- 180 (254)
T ss_dssp CSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHG-
T ss_pred ccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccc-
Confidence 4566777777774 688999999999999999888764 579999999999999999999999999888888876532
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
..++||.|+++.. . ....++++.+.+.|||||+|+.|
T Consensus 181 ------------------~~~~fD~V~ani~------------------~-------~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 181 ------------------PFGPFDLLVANLY------------------A-------ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp ------------------GGCCEEEEEEECC------------------H-------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------cccccchhhhccc------------------c-------ccHHHHHHHHHHhcCCCcEEEEE
Confidence 3468999997532 1 11345677888999999999986
Q ss_pred cCCCCccccHHHHHHHHhhCCCcEEec
Q psy15212 275 TCSLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
. + ..+..+.|...++++ +++.+.
T Consensus 218 g--i-l~~~~~~v~~~~~~~-Gf~~~~ 240 (254)
T d2nxca1 218 G--I-LKDRAPLVREAMAGA-GFRPLE 240 (254)
T ss_dssp E--E-EGGGHHHHHHHHHHT-TCEEEE
T ss_pred e--c-chhhHHHHHHHHHHC-CCEEEE
Confidence 3 2 234555666666666 565543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.58 E-value=5.7e-15 Score=128.64 Aligned_cols=111 Identities=15% Similarity=0.293 Sum_probs=90.3
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...+.++++++|||+|||+|..+.++++.. .+|+|+|+|+.+++.++++++..+.. ++++++|+..++
T Consensus 8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~---------- 76 (231)
T d1vl5a_ 8 MQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP---------- 76 (231)
T ss_dssp HHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC----------
T ss_pred HHhcCCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccccccccccccccccccc----------
Confidence 345678999999999999999999999765 59999999999999999999999987 899999998875
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.++.||.|++- .++.+-++ ...+|+++.++|||||+++.++-
T Consensus 77 --------~~~~~fD~v~~~------~~l~~~~d----------------~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 77 --------FTDERFHIVTCR------IAAHHFPN----------------PASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp --------SCTTCEEEEEEE------SCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --------cccccccccccc------ccccccCC----------------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 356899999852 23322222 34579999999999999998653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4.8e-15 Score=131.01 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=96.6
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
++..-..+...+.++||++|||+|||+|..+..+++..+.+|+|+|+|+.+++.++++....|+. ++++.+|+....
T Consensus 18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~- 96 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV- 96 (245)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-
Confidence 44555667788889999999999999999999999877789999999999999999999999985 899999998753
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.+++||.|++ .+++.+-++ ...+|+++.+.|||||+++++
T Consensus 97 ------------------~~~~fD~v~~------~~~~~~~~d----------------~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 97 ------------------ANEKCDVAAC------VGATWIAGG----------------FAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp ------------------CSSCEEEEEE------ESCGGGTSS----------------SHHHHHHHTTSEEEEEEEEEE
T ss_pred ------------------ccCceeEEEE------EehhhccCC----------------HHHHHHHHHHHcCcCcEEEEE
Confidence 3578999984 223222221 135799999999999999987
Q ss_pred c
Q psy15212 275 T 275 (329)
Q Consensus 275 T 275 (329)
.
T Consensus 137 ~ 137 (245)
T d1nkva_ 137 E 137 (245)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=2.1e-15 Score=131.24 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=72.7
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYID 200 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~ 200 (329)
..+++++++|++|||+|||+|..|..+|++++ ++|+++|+++.+++.+++++++.++. +.++++|+....
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~------- 139 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV------- 139 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-------
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-------
Confidence 44677899999999999999999999998876 79999999999999999999999997 788889987643
Q ss_pred hcccccccccccCCCCCCEEEEccC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLP 225 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~P 225 (329)
...+.||+|++++.
T Consensus 140 -----------~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 140 -----------PEFSPYDVIFVTVG 153 (213)
T ss_dssp -----------GGGCCEEEEEECSB
T ss_pred -----------ccccchhhhhhhcc
Confidence 23468999998754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.9e-15 Score=138.02 Aligned_cols=116 Identities=24% Similarity=0.303 Sum_probs=89.7
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCC------------ceEE
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNL------------KATL 184 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~------------~v~~ 184 (329)
+.+.++...++++||++|||+|||+|+.|.+||..++ |+|+++|+++++++.+++|+++.+. .+.+
T Consensus 85 kD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred ccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 3444556678999999999999999999999999875 8999999999999999999997631 2678
Q ss_pred EecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhc
Q psy15212 185 ILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKM 264 (329)
Q Consensus 185 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~ 264 (329)
.+.|+.... .......||.|++|.|-. | +.|.++.+.
T Consensus 165 ~~~di~~~~----------------~~~~~~~fD~V~LD~p~P------------~---------------~~l~~~~~~ 201 (324)
T d2b25a1 165 IHKDISGAT----------------EDIKSLTFDAVALDMLNP------------H---------------VTLPVFYPH 201 (324)
T ss_dssp EESCTTCCC-----------------------EEEEEECSSST------------T---------------TTHHHHGGG
T ss_pred Eecchhhcc----------------cccCCCCcceEeecCcCH------------H---------------HHHHHHHHh
Confidence 888877643 112456899999998832 2 258899999
Q ss_pred CCCCCEEE-EEcCC
Q psy15212 265 LKPGGKLL-FVTCS 277 (329)
Q Consensus 265 LkpgG~lv-ysTCS 277 (329)
|||||+|+ |+.|.
T Consensus 202 LKpGG~lv~~~P~i 215 (324)
T d2b25a1 202 LKHGGVCAVYVVNI 215 (324)
T ss_dssp EEEEEEEEEEESSH
T ss_pred ccCCCEEEEEeCCH
Confidence 99999877 65554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.57 E-value=5e-15 Score=133.64 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=91.5
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccc
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
..+.+|.+|||+|||+|+.+..+++..+.+|+|+|+|+.+++.++++....|+. ++++.+|+.+++
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~------------ 130 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP------------ 130 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS------------
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc------------
Confidence 357889999999999999999999876779999999999999999999999985 899999998876
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+++++||.|++ .+++.+-|+ ..++|+++.++|||||++++++..
T Consensus 131 ------~~~~sfD~V~~------~~~l~h~~d----------------~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 131 ------CEDNSYDFIWS------QDAFLHSPD----------------KLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp ------SCTTCEEEEEE------ESCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ------ccccccchhhc------cchhhhccC----------------HHHHHHHHHHhcCCCcEEEEEEee
Confidence 35688999984 233333222 235799999999999999987643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.53 E-value=1.4e-14 Score=119.24 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=82.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.|.+|||+|||+|+.++.++.+...+|+++|.++..++.+++|++.+++. ++++++|+....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l---------------- 77 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI---------------- 77 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH----------------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccc----------------
Confidence 58899999999999999988765479999999999999999999999986 899999988753
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHH--HHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNN--LWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~--a~~~LkpgG~lvysT 275 (329)
. ...++||+|++|||+... .. ...|.. ..++|+|||.++..+
T Consensus 78 ~-~~~~~fDiIf~DPPy~~~----------------~~-------~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 78 D-CLTGRFDLVFLDPPYAKE----------------TI-------VATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp H-HBCSCEEEEEECCSSHHH----------------HH-------HHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c-ccccccceeEechhhccc----------------hH-------HHHHHHHHHCCCcCCCeEEEEEe
Confidence 1 135789999999996521 11 112222 246899999988764
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=1.3e-13 Score=125.05 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=101.6
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|...-.++...+++++|++|||+|||.|+.+.++|+..+++|+|+++|+..++.++++++..|+. +.+...|....
T Consensus 46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~-- 123 (291)
T d1kpia_ 46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-- 123 (291)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--
Confidence 44445566777889999999999999999999999888899999999999999999999999986 67777776432
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+++||.|+ +.|++.+-++..-... .+....+++.+.++|||||+++..
T Consensus 124 -------------------~~~fD~i~------sie~~eH~~~~~~~~~-------~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 124 -------------------DEPVDRIV------SLGAFEHFADGAGDAG-------FERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp -------------------CCCCSEEE------EESCGGGTTCCSSCCS-------TTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred -------------------ccccceEe------echhHHhcchhhhhhH-------HHHHHHHHHHHHHhCCCCCceEEE
Confidence 46899998 4566665544210000 012456899999999999999998
Q ss_pred cCCCCc
Q psy15212 275 TCSLWF 280 (329)
Q Consensus 275 TCS~~~ 280 (329)
|.++..
T Consensus 172 ~i~~~~ 177 (291)
T d1kpia_ 172 TITIPD 177 (291)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 877544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=8.2e-14 Score=125.88 Aligned_cols=118 Identities=16% Similarity=0.230 Sum_probs=93.6
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|...-..+...++++||++|||+|||.|+.+.++++..+.+|+|+|+|+..++.+++++++.|+. +.+...|...++
T Consensus 37 Q~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~- 115 (280)
T d2fk8a1 37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA- 115 (280)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc-
Confidence 33334455666789999999999999999999999887889999999999999999999999986 677777766543
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
++||.|++ .+++.+-++. ....+++.+.++|||||+++..
T Consensus 116 --------------------~~fD~i~s------i~~~eh~~~~--------------~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 116 --------------------EPVDRIVS------IEAFEHFGHE--------------NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp --------------------CCCSEEEE------ESCGGGTCGG--------------GHHHHHHHHHHHSCTTCEEEEE
T ss_pred --------------------cchhhhhH------hhHHHHhhhh--------------hHHHHHHHHHhccCCCceEEEE
Confidence 68999983 4444332221 1246899999999999999987
Q ss_pred c
Q psy15212 275 T 275 (329)
Q Consensus 275 T 275 (329)
+
T Consensus 156 ~ 156 (280)
T d2fk8a1 156 S 156 (280)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=3.8e-14 Score=122.04 Aligned_cols=80 Identities=21% Similarity=0.285 Sum_probs=69.5
Q ss_pred hcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..+--.|.+|||+|||+|+.+..++.+...+|+|+|+|+.+++.+++|++.++...+++.+|+..+.
T Consensus 41 ~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~------------- 107 (201)
T d1wy7a1 41 SLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN------------- 107 (201)
T ss_dssp HTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC-------------
T ss_pred hcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhC-------------
Confidence 3444468899999999999999888654469999999999999999999999998999999987653
Q ss_pred ccccccCCCCCCEEEEccCCc
Q psy15212 207 NRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCs 227 (329)
++||.|++||||.
T Consensus 108 --------~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 108 --------SRVDIVIMNPPFG 120 (201)
T ss_dssp --------CCCSEEEECCCCS
T ss_pred --------CcCcEEEEcCccc
Confidence 6799999999985
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.1e-14 Score=125.74 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=80.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc------eEEEecCccccchhhhhhh
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK------ATLILSDISKINLKKLYID 200 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~------v~~~~~D~~~~~~~~~~~~ 200 (329)
+++||++|||+|||+|..|..+|++.+ ++|+++|+++.+++.+++|+++.++. +.+..+|+....
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~------- 145 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY------- 145 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-------
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-------
Confidence 679999999999999999999999865 79999999999999999999987652 678889987643
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+.||+|++++.+. +. ....++.|||||+||..
T Consensus 146 -----------~~~~~fD~I~~~~~~~------~i----------------------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 146 -----------AEEAPYDAIHVGAAAP------VV----------------------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp -----------GGGCCEEEEEECSBBS------SC----------------------CHHHHHTEEEEEEEEEE
T ss_pred -----------chhhhhhhhhhhcchh------hc----------------------CHHHHhhcCCCcEEEEE
Confidence 2356899999876433 11 12345679999999964
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=8.4e-14 Score=120.17 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=86.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
+.++++|||+|||+|..+.++++. +.+|+|+|+|+.+++.+++++...+..+..+.+|+.+++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~---------------- 97 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS---------------- 97 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC----------------
T ss_pred cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhcccccccccccccccccc----------------
Confidence 357789999999999999999985 569999999999999999999998888888999998876
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.+++||+|++- +++..- ...+ ..++|+.+.++|||||++++.+
T Consensus 98 --~~~~~fD~I~~~------~~l~~~-------~~~d-------~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 98 --FEDKTFDYVIFI------DSIVHF-------EPLE-------LNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp --SCTTCEEEEEEE------SCGGGC-------CHHH-------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccCcCceEEEEe------cchhhC-------ChhH-------HHHHHHHHHHHcCcCcEEEEEE
Confidence 356889999952 222211 1111 3468999999999999998764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.48 E-value=5e-14 Score=124.19 Aligned_cols=106 Identities=25% Similarity=0.242 Sum_probs=84.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRF 211 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 211 (329)
++.+|||+|||+|..+..++++. .+|+|+|+|+.+++.+++++...|.+++++++|+..+.
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g-~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~------------------ 97 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN------------------ 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC------------------
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC-CccEeeccchhhhhhccccccccCccceeeccchhhhc------------------
Confidence 35699999999999999999864 49999999999999999999999999999999998875
Q ss_pred cCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 212 YKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..++||.|+| .++..+. ..+.++ ..++|+.+.++|||||.+++..
T Consensus 98 -~~~~fD~i~~--~~~~~~~---------~~~~~~-------~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 98 -INRKFDLITC--CLDSTNY---------IIDSDD-------LKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp -CSCCEEEEEE--CTTGGGG---------CCSHHH-------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred -ccccccccce--eeeeeec---------cCCHHH-------HHHHHHHHHHhCCCCeEEEEEe
Confidence 2468999995 1122221 112222 3568999999999999999753
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.48 E-value=1.6e-13 Score=118.36 Aligned_cols=114 Identities=13% Similarity=0.262 Sum_probs=91.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
++..|||+|||+|..+.++|+..+ ..++|+|+++.++..+.+++++.|++ +.++.+|+..+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~---------------- 92 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT---------------- 92 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH----------------
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhh----------------
Confidence 456899999999999999999887 79999999999999999999999997 999999998764
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+.+..+|.|++.-|.. |........++ ++.++|+.+.+.|||||.|++.|
T Consensus 93 ~~~~~~~~d~v~i~fp~P------------~~k~~h~k~Rl--~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 93 DVFEPGEVKRVYLNFSDP------------WPKKRHEKRRL--TYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp HHCCTTSCCEEEEESCCC------------CCSGGGGGGST--TSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccCchhhhccccccccc------------cchhhhcchhh--hHHHHHHHHHHhCCCCcEEEEEE
Confidence 234668899999876643 11111111111 34578999999999999999886
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1.3e-13 Score=124.80 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=98.2
Q ss_pred echhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 117 QDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 117 Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
|+.-...++..++++||++|||+|||.|+.+.++|+..+++|+|+++|+..++.+++++++.|+. +++..+|...++
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 125 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 125 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-
Confidence 44445677778899999999999999999999999988899999999999999999999999885 888899987654
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
++||.|++ .|++.+-+.. ....+++.+.++|||||+++..
T Consensus 126 --------------------~~fD~i~s------i~~~eh~~~~--------------~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 126 --------------------EPVDRIVS------IGAFEHFGHE--------------RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp --------------------CCCSEEEE------ESCGGGTCTT--------------THHHHHHHHHHHSCTTCEEEEE
T ss_pred --------------------ccccceee------ehhhhhcCch--------------hHHHHHHHHHhhcCCCCcEEEE
Confidence 68999983 4444332211 1246899999999999999987
Q ss_pred cCC
Q psy15212 275 TCS 277 (329)
Q Consensus 275 TCS 277 (329)
|.+
T Consensus 166 ~i~ 168 (285)
T d1kpga_ 166 TIT 168 (285)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=1.6e-13 Score=120.83 Aligned_cols=111 Identities=23% Similarity=0.241 Sum_probs=87.4
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
...++.+|||+|||+|..+..+++. +..|+|+|+|+.+++.+++++...+.++++.++|+.+++
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~--------------- 101 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA--------------- 101 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC---------------
T ss_pred cCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccccchheehhhhhcc---------------
Confidence 3456679999999999999999985 469999999999999999999999989999999999876
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
.+++||.|+| ++. ++. + .+.+ ...+.|+++.+.|||||+++.+...+
T Consensus 102 ----~~~~fD~I~~----~~~-~~~------~-~~~~-------~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 102 ----FKNEFDAVTM----FFS-TIM------Y-FDEE-------DLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp ----CCSCEEEEEE----CSS-GGG------G-SCHH-------HHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred ----cccccchHhh----hhh-hhh------c-CChH-------HHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 2368999995 211 111 0 1111 23468999999999999999876543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=1.1e-13 Score=116.14 Aligned_cols=108 Identities=13% Similarity=0.174 Sum_probs=79.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|.+|||+|||+|+.++.++.+ +++++++|+|+.+++.+++|++.+|+..++...|+..+.. .
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~-~------------- 103 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP-E------------- 103 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH-H-------------
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccc-c-------------
Confidence 457889999999999999988875 5699999999999999999999999987777666544210 0
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
......+||.|++|||+.. +. . +...+++. ..+|++||.+++.
T Consensus 104 ~~~~~~~fD~If~DPPY~~-~~-------------~------~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 104 AKAQGERFTVAFMAPPYAM-DL-------------A------ALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp HHHTTCCEEEEEECCCTTS-CT-------------T------HHHHHHHH--HTCEEEEEEEEEE
T ss_pred ccccCCccceeEEcccccc-CH-------------H------HHHHHHHH--cCCcCCCeEEEEE
Confidence 0123468999999999752 10 0 11222333 3579999988864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.6e-14 Score=123.65 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=88.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|.+|||+|||+|..+..+++..+.+|+++|+|+.+++.++++.++.+..+.++..|+.... .
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------~ 115 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA----------------P 115 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG----------------G
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc----------------c
Confidence 578899999999999999999765578999999999999999999888777888888876643 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.+..++||.|+.|+.-+..... .......+++++.++|||||+++|.+
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~-----------------~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETW-----------------HTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGT-----------------TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccceeecccccccccc-----------------cccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 2356789999999875533221 11124568899999999999999854
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=3.2e-13 Score=124.32 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=113.0
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC------CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD------IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~------~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~ 198 (329)
..++.++++.+|||.|||+|++...++..+. ..++|+|+++.+++.++.|+...+....+..+|.....
T Consensus 110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----- 184 (328)
T d2f8la1 110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL----- 184 (328)
T ss_dssp HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-----
T ss_pred HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-----
Confidence 4455678889999999999999999876432 48999999999999999999988888888888865533
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCC--cccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE-c
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDI--PWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV-T 275 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~--~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys-T 275 (329)
...+||+|++|||++......+.... ........ .+.-++.+++++|++||++++. .
T Consensus 185 --------------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~------~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 185 --------------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSF------AHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp --------------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEE------HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------------ccccccccccCCCCCCCccchhhhhcchhcccCcch------HHHHHHHHHHHhcCCCCceEEEec
Confidence 34689999999999754432221111 11111111 2445899999999999987664 4
Q ss_pred CCCCccccHHHHHHHHhhCCCcE-EecCCCcccCC
Q psy15212 276 CSLWFEESEEQAIIFSKNHKDSI-RLNSPGQLLPT 309 (329)
Q Consensus 276 CS~~~~Ene~vv~~~l~~~~~~~-~~~~~~~~~p~ 309 (329)
+++....+...+..++-++.... ++..|..++++
T Consensus 245 ~~~l~~~~~~~lR~~L~~~~~i~~ii~lp~~~F~~ 279 (328)
T d2f8la1 245 DAMFGTSDFAKVDKFIKKNGHIEGIIKLPETLFKS 279 (328)
T ss_dssp GGGGGSTTHHHHHHHHHHHEEEEEEEECCGGGSCC
T ss_pred CccccCchhHHHHHHHHhCCcEEEEEECCccccCC
Confidence 66766677776777665543332 34455556654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=6.6e-13 Score=116.44 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=94.4
Q ss_pred HHHHhhhc------CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 121 AQLAAPLL------DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 121 s~l~~~~l------~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|.|++.++ .++||++|||+|||+|..+.++|+..+ +.|+|+|+|+.+++.+++++++.+. +..+.+|+....
T Consensus 57 sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~n-i~~i~~d~~~~~ 135 (230)
T d1g8sa_ 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN-IIPILGDANKPQ 135 (230)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTT-EEEEECCTTCGG
T ss_pred cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcc-cceEEEeeccCc
Confidence 45555543 478999999999999999999999876 8999999999999999998776542 556778887764
Q ss_pred hhhhhhhhcccccccccccCCCCCCE--EEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDR--ILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~--Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
.+ ....+|. ++.|..+. . ....++.++.++|||||++
T Consensus 136 ----------------~~-~~~~~~v~~i~~~~~~~-----------------~-------~~~~~l~~~~r~LKpgG~~ 174 (230)
T d1g8sa_ 136 ----------------EY-ANIVEKVDVIYEDVAQP-----------------N-------QAEILIKNAKWFLKKGGYG 174 (230)
T ss_dssp ----------------GG-TTTCCCEEEEEECCCST-----------------T-------HHHHHHHHHHHHEEEEEEE
T ss_pred ----------------cc-ccccceeEEeeccccch-----------------H-------HHHHHHHHHHHhcccCceE
Confidence 11 2334554 44443211 1 1345688999999999999
Q ss_pred EEEc---C---CCCccccHHHHHHHHhhCCCcEEec
Q psy15212 272 LFVT---C---SLWFEESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 272 vysT---C---S~~~~Ene~vv~~~l~~~~~~~~~~ 301 (329)
+.+. | +..+.+-.+.+...|+.. +|+.+.
T Consensus 175 ~i~~k~~~~d~~~~~~~~~~e~~~~L~~a-GF~ive 209 (230)
T d1g8sa_ 175 MIAIKARSIDVTKDPKEIFKEQKEILEAG-GFKIVD 209 (230)
T ss_dssp EEEEEGGGTCSSSCHHHHHHHHHHHHHHH-TEEEEE
T ss_pred EEEeeccccCCCCCHHHHHHHHHHHHHHc-CCEEEE
Confidence 8873 2 222333333344455554 676654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.41 E-value=1.1e-12 Score=111.84 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=86.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.+| +|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++.+..+++ +++...|+....
T Consensus 29 ~~~g-rvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--------------- 91 (198)
T d2i6ga1 29 VAPG-RTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--------------- 91 (198)
T ss_dssp SCSC-EEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC---------------
T ss_pred CCCC-cEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc---------------
Confidence 4555 9999999999999999986 459999999999999999999999998 789999988765
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.++.||.|++... +..-|. .. ..++|+++.+.|+|||++++.+..
T Consensus 92 ----~~~~fD~I~~~~~------~~~~~~-------~~-------~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 92 ----FDGEYDFILSTVV------MMFLEA-------QT-------IPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp ----CCCCEEEEEEESC------GGGSCT-------TH-------HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ----ccccccEEEEeee------eecCCH-------HH-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 3578999997443 222121 11 245899999999999999988654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.7e-13 Score=114.89 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=68.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.|.+|||+|||+|..++.++.+...+|+++|.++..++.+++|++.+++. ++++.+|+..+. .
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l----------------~ 106 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL----------------A 106 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH----------------S
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc----------------c
Confidence 57799999999999999988876579999999999999999999999886 889999987653 1
Q ss_pred ccCCCCCCEEEEccCCc
Q psy15212 211 FYKNKYFDRILADLPCT 227 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCs 227 (329)
....+||+|++|||+.
T Consensus 107 -~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 107 -QKGTPHNIVFVDPPFR 122 (183)
T ss_dssp -SCCCCEEEEEECCSSS
T ss_pred -ccccccCEEEEcCccc
Confidence 1356899999999976
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.39 E-value=1.3e-12 Score=112.37 Aligned_cols=115 Identities=17% Similarity=0.323 Sum_probs=92.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
.+..|||+|||.|..+.++|+..+ ..++|+|+++.++..+.+++.+.+++ +.++.+|+..+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~---------------- 94 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT---------------- 94 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG----------------
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh----------------
Confidence 356899999999999999999887 79999999999999999999999997 999999998865
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
..+....+|.|.+.-|.- |.+......++ +|.++|+...+.|||||.|.++|-
T Consensus 95 ~~~~~~~~~~i~i~fPdP------------w~K~~h~krRl--~~~~~l~~~~~~LkpgG~l~i~TD 147 (204)
T d1yzha1 95 DYFEDGEIDRLYLNFSDP------------WPKKRHEKRRL--TYKTFLDTFKRILPENGEIHFKTD 147 (204)
T ss_dssp GTSCTTCCSEEEEESCCC------------CCSGGGGGGST--TSHHHHHHHHHHSCTTCEEEEEES
T ss_pred hhccCCceehhccccccc------------ccchhhhhhhh--hHHHHHHHHHHhCCCCcEEEEEEC
Confidence 334667899998876632 22111111111 356789999999999999998863
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.39 E-value=2.9e-13 Score=117.48 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=81.5
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCc
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDI 189 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~ 189 (329)
.|....+-.......++|++++|++|||+|||+|..|..+|++.+++|+++|+++..++.+++|+++.|+. +.++++|+
T Consensus 57 ~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~ 136 (215)
T d1jg1a_ 57 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG 136 (215)
T ss_dssp TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG
T ss_pred hhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc
Confidence 45555443334555778899999999999999999999999887778999999999999999999999987 89999998
Q ss_pred cccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 190 SKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
..-. .....||+|++.+.+.
T Consensus 137 ~~g~------------------~~~~pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 137 SKGF------------------PPKAPYDVIIVTAGAP 156 (215)
T ss_dssp GGCC------------------GGGCCEEEEEECSBBS
T ss_pred ccCC------------------cccCcceeEEeecccc
Confidence 7632 2357899999865433
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.38 E-value=1e-12 Score=118.41 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=92.7
Q ss_pred chhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchh
Q psy15212 118 DAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLK 195 (329)
Q Consensus 118 d~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~ 195 (329)
|.-+-++-.+..+.++.+|||+|||+|..+..+++..+ ++|+|+|+|+.+++.++++....+.++++..+|+..++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-- 90 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-- 90 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc--
Confidence 33444555555677788999999999999999998765 69999999999999999999998888999999998765
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+ .++||.|++.. ++.+-++ ...+|+++.+.|||||.++..+
T Consensus 91 ----------------~-~~~fD~v~~~~------~l~~~~d----------------~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 91 ----------------L-NDKYDIAICHA------FLLHMTT----------------PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ----------------C-SSCEEEEEEES------CGGGCSS----------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------c-cCCceEEEEeh------hhhcCCC----------------HHHHHHHHHHHcCcCcEEEEEE
Confidence 2 35799999642 3322222 2357999999999999998765
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.38 E-value=7.9e-13 Score=117.05 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=84.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+|.+|||+|||+|+.+..+++...++|+|+|+|+.+++.++++....+.. +.+.++|+....
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-------------- 87 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-------------- 87 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--------------
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc--------------
Confidence 4578999999999999999998865479999999999999999999887765 788999986543
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
...++.||+|++. +++...+ .+.+ ....+++.+.++|||||+++.++
T Consensus 88 ---~~~~~~fD~V~~~------~~l~~~~-----~~~~-------~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 88 ---MDLGKEFDVISSQ------FSFHYAF-----STSE-------SLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp ---CCCSSCEEEEEEE------SCGGGGG-----SSHH-------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---ccccccceEEEEc------ceeeecC-----CCHH-------HHHHHHHHHhceeCCCCEEEEEe
Confidence 1135689999852 2221111 1112 24568999999999999998764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.38 E-value=1.1e-12 Score=110.95 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=69.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..|.+|||+|||+|+.++.++.+...+|+++|.++..++.+++|++.++.. ++++++|+...- ..+.
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l-~~~~---------- 108 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL-EQFY---------- 108 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH-HHHH----------
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh-hhhc----------
Confidence 468999999999999999999875579999999999999999999999885 789999987642 1110
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
....+||.|++|||+.
T Consensus 109 ---~~~~~fDlIflDPPY~ 124 (182)
T d2fhpa1 109 ---EEKLQFDLVLLDPPYA 124 (182)
T ss_dssp ---HTTCCEEEEEECCCGG
T ss_pred ---ccCCCcceEEechhhh
Confidence 1345899999999974
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.38 E-value=1.4e-12 Score=113.39 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=84.0
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
.+++.+|||+|||+|..+..+++... .+|+|+|+|+.+++.++++++..+.. +++..+|+...+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~----------- 105 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----------- 105 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-----------
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-----------
Confidence 45788999999999999999998653 69999999999999999999988765 677788876654
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
...+|.|++. + ++... ..++ ..++|+++.+.|||||.+++++-+.
T Consensus 106 ---------~~~~d~i~~~---~---~l~~~-------~~~d-------~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 106 ---------IKNASMVILN---F---TLQFL-------PPED-------RIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp ---------CCSEEEEEEE---S---CGGGS-------CGGG-------HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ---------cccceeeEEe---e---ecccc-------Chhh-------HHHHHHHHHHhCCCCceeecccccc
Confidence 3578888752 1 11111 1122 2468999999999999999986554
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.9e-13 Score=116.11 Aligned_cols=134 Identities=14% Similarity=0.032 Sum_probs=98.7
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
...++.+|||+|||+|..+..+++....+|+|+|+|+.+++.+++++...+.. ++++++|+.++.
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-------------- 122 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-------------- 122 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--------------
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc--------------
Confidence 45667899999999999999987665579999999999999999999988876 789999998875
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCcc------
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFE------ 281 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~------ 281 (329)
+..++||.|++. +++.+-|+ . ...++|+.+.+.|||||.+++++-.....
T Consensus 123 ----~~~~~fD~I~~~------~~l~h~~~-------~-------~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~ 178 (222)
T d2ex4a1 123 ----PEPDSYDVIWIQ------WVIGHLTD-------Q-------HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDV 178 (222)
T ss_dssp ----CCSSCEEEEEEE------SCGGGSCH-------H-------HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETT
T ss_pred ----cccccccccccc------cccccchh-------h-------hhhhHHHHHHHhcCCcceEEEEEcccccccccccC
Confidence 346799999852 33332221 1 13468999999999999999873111100
Q ss_pred -----ccHHHHHHHHhhCCCcEEec
Q psy15212 282 -----ESEEQAIIFSKNHKDSIRLN 301 (329)
Q Consensus 282 -----Ene~vv~~~l~~~~~~~~~~ 301 (329)
-+.+.+..++++. +++.+.
T Consensus 179 ~~~~~~~~~~~~~l~~~a-Gf~ii~ 202 (222)
T d2ex4a1 179 DSSVCRDLDVVRRIICSA-GLSLLA 202 (222)
T ss_dssp TTEEEEBHHHHHHHHHHT-TCCEEE
T ss_pred CceeeCCHHHHHHHHHHc-CCEEEE
Confidence 1456677777775 565543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.37 E-value=3.8e-13 Score=116.18 Aligned_cols=162 Identities=22% Similarity=0.237 Sum_probs=108.1
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLY 198 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~ 198 (329)
+.+.+.++.+.+|++|||.|||+|+++..+.+... ..++++|+++..+..+ ....++++|.....
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------~~~~~~~~~~~~~~----- 74 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFLLWE----- 74 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGGGCC-----
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------ccceeeeeehhccc-----
Confidence 45667778889999999999999999998887655 6899999998764321 12567788876543
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHH-------HHHHHHHHHHHHHHhcCCCCCEE
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIK-------KLSKYSCKILNNLWKMLKPGGKL 271 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~-------~l~~~q~~lL~~a~~~LkpgG~l 271 (329)
....||.|+.|||+.........+............ .....+..++.+++++|++||++
T Consensus 75 --------------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~ 140 (223)
T d2ih2a1 75 --------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL 140 (223)
T ss_dssp --------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEE
T ss_pred --------------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCce
Confidence 346899999999997665544333221110000000 01124667899999999999999
Q ss_pred EEEc-CCCCccccHHHHHHHHhhCCCcEEecCCCcccCCC
Q psy15212 272 LFVT-CSLWFEESEEQAIIFSKNHKDSIRLNSPGQLLPTV 310 (329)
Q Consensus 272 vysT-CS~~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~ 310 (329)
++.+ +|+...++...+.+++.++.... +..+..++++.
T Consensus 141 ~~I~p~~~l~~~~~~~lR~~l~~~~~i~-i~~~~~~F~~~ 179 (223)
T d2ih2a1 141 VFVVPATWLVLEDFALLREFLAREGKTS-VYYLGEVFPQK 179 (223)
T ss_dssp EEEEEGGGGTCGGGHHHHHHHHHHSEEE-EEEEESCSTTC
T ss_pred EEEEeeeeccCcchHHHHHHHHhcCCEE-EEcchhcCCCC
Confidence 8887 66666666666666665543333 22234455543
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.37 E-value=5.9e-13 Score=116.19 Aligned_cols=105 Identities=27% Similarity=0.270 Sum_probs=81.6
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
....++|++++|++|||+|||+|..|..+|++. ++|+++|+++..++.+++++... -.+.++++|+....
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~~g~-------- 129 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTLGY-------- 129 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGGCC--------
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc-cccccccCchhhcc--------
Confidence 334567899999999999999999999999875 59999999999999999988754 24889999976532
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...++||+|++++.+. +- .....+.|||||+||.-
T Consensus 130 ----------~~~~pfD~Iiv~~a~~------~i----------------------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 130 ----------EEEKPYDRVVVWATAP------TL----------------------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp ----------GGGCCEEEEEESSBBS------SC----------------------CHHHHHTEEEEEEEEEE
T ss_pred ----------hhhhhHHHHHhhcchh------hh----------------------hHHHHHhcCCCCEEEEE
Confidence 2346899999876432 11 12234569999999963
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.35 E-value=2.5e-12 Score=109.83 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=83.8
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
+..++--.|.+|||+|||+|..++.++.+...+|+++|+++.+++.+++|+.. +.++++|+..++
T Consensus 41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~----~~~~~~D~~~l~----------- 105 (197)
T d1ne2a_ 41 IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG----VNFMVADVSEIS----------- 105 (197)
T ss_dssp HHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT----SEEEECCGGGCC-----------
T ss_pred HHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc----ccEEEEehhhcC-----------
Confidence 33444446899999999999999887765447999999999999999998643 678999987654
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccH
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene 284 (329)
++||.|++|||+ |+.+++.+ +.+|+.+++. +..+|+ ++.....
T Consensus 106 ----------~~fD~Vi~NPPf---g~~~~~~D-----------------~~fl~~a~~~----~~~iy~---ih~~~~~ 148 (197)
T d1ne2a_ 106 ----------GKYDTWIMNPPF---GSVVKHSD-----------------RAFIDKAFET----SMWIYS---IGNAKAR 148 (197)
T ss_dssp ----------CCEEEEEECCCC----------C-----------------HHHHHHHHHH----EEEEEE---EEEGGGH
T ss_pred ----------CcceEEEeCccc---chhhhhch-----------------HHHHHHHHhc----CCeEEE---ehhhhHH
Confidence 679999999996 33333322 2356666543 568886 4556677
Q ss_pred HHHHHHHhhC
Q psy15212 285 EQAIIFSKNH 294 (329)
Q Consensus 285 ~vv~~~l~~~ 294 (329)
+.+....+..
T Consensus 149 ~~i~~~~~~~ 158 (197)
T d1ne2a_ 149 DFLRREFSAR 158 (197)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 7777766654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=3.6e-12 Score=111.05 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=76.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++. . ..++.+|+.+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~-~~~~~~~~~~l~----------------- 97 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V-KNVVEAKAEDLP----------------- 97 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C-SCEEECCTTSCC-----------------
T ss_pred CCCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c-cccccccccccc-----------------
Confidence 46779999999999999999975 569999999999999988763 2 235678888765
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
+.+++||.|++-. .++.+-|+ ..++|+++.++|||||.++.++
T Consensus 98 -~~~~~fD~ii~~~-----~~~~~~~d----------------~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 98 -FPSGAFEAVLALG-----DVLSYVEN----------------KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp -SCTTCEEEEEECS-----SHHHHCSC----------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccccccceeeec-----chhhhhhh----------------HHHHHHHHHhhcCcCcEEEEEE
Confidence 3568999998411 12222221 3457999999999999999875
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.28 E-value=8.7e-12 Score=105.34 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=66.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.+|||+|||+|+.++.++.+....|+.||.+...++.+++|++++++. ..+...|+.....
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~-------------- 108 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK-------------- 108 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT--------------
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc--------------
Confidence 57899999999999999999876679999999999999999999999874 4566666554320
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
......+||+|++|||+.
T Consensus 109 -~~~~~~~fDlIFlDPPY~ 126 (183)
T d2ifta1 109 -QPQNQPHFDVVFLDPPFH 126 (183)
T ss_dssp -SCCSSCCEEEEEECCCSS
T ss_pred -ccccCCcccEEEechhHh
Confidence 011245799999999986
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.27 E-value=1.7e-12 Score=113.21 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=78.8
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-------CEEEEEeCChhHHHHHHHHHHHcC-----Cc-eEEEecCccccchh
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-------IKLISVDNNLSRLNMISENLKRLN-----LK-ATLILSDISKINLK 195 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-------~~v~avD~~~~rl~~l~~n~~~~g-----~~-v~~~~~D~~~~~~~ 195 (329)
++++|++|||+|||+|..|..++++.+ .+|+++|+++..++.+++|+.+.+ +. +.++.+|+....
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~-- 154 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY-- 154 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC--
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc--
Confidence 689999999999999999999998754 489999999999999999976543 33 788999987643
Q ss_pred hhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 196 KLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...+.||+|++++.+. .-| ....+.||+||+||.-
T Consensus 155 ----------------~~~~~fD~Iiv~~a~~------~~p----------------------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 155 ----------------PPNAPYNAIHVGAAAP------DTP----------------------TELINQLASGGRLIVP 189 (223)
T ss_dssp ----------------GGGCSEEEEEECSCBS------SCC----------------------HHHHHTEEEEEEEEEE
T ss_pred ----------------ccccceeeEEEEeech------hch----------------------HHHHHhcCCCcEEEEE
Confidence 2346899999987644 111 1234579999999864
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1.5e-11 Score=105.10 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=74.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..++ +++|+|+|+.+++.++++ .+.++++|+.+++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~----------------- 86 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLP----------------- 86 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCC-----------------
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------ccccccccccccc-----------------
Confidence 456799999999999887774 578999999999988764 3688999998875
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+.+++||.|++ ..++.+.++ ..++|+++.++|+|||.++..+..
T Consensus 87 -~~~~~fD~I~~------~~~l~h~~d----------------~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 87 -LKDESFDFALM------VTTICFVDD----------------PERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp -SCTTCEEEEEE------ESCGGGSSC----------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -ccccccccccc------ccccccccc----------------cccchhhhhhcCCCCceEEEEecC
Confidence 35678999984 344444332 235789999999999999988653
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=2.3e-11 Score=112.83 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=74.5
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+..++++.++++|||++||.|.+|+.+|+.. .+|+|+|.++..++.+++|++.+|+. ++++.+|+..... .
T Consensus 204 v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~-~------ 275 (358)
T d1uwva2 204 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT-K------ 275 (358)
T ss_dssp HHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS-S------
T ss_pred HHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhh-h------
Confidence 3445578889999999999999999999755 49999999999999999999999997 8899998876420 0
Q ss_pred ccccccccccCCCCCCEEEEccCCccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
.......||+|++|||-+|.
T Consensus 276 -------~~~~~~~~d~vilDPPR~G~ 295 (358)
T d1uwva2 276 -------QPWAKNGFDKVLLDPARAGA 295 (358)
T ss_dssp -------SGGGTTCCSEEEECCCTTCC
T ss_pred -------hhhhhccCceEEeCCCCccH
Confidence 00124679999999997764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=5.6e-12 Score=112.75 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.++.+|||+|||+|..+..+++..+ ..++|+|+|+.+++.++++. -.+.++++|+..++
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l~--------------- 142 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLP--------------- 142 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCS---------------
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhhcc---------------
Confidence 56678999999999999999999876 79999999999999887653 23788999998876
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.++.||.|++-- . | .. ++++.++|||||+|+++|=
T Consensus 143 ---~~~~sfD~v~~~~------~----~--------~~-----------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 143 ---FSDTSMDAIIRIY------A----P--------CK-----------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ---BCTTCEEEEEEES------C----C--------CC-----------HHHHHHHEEEEEEEEEEEE
T ss_pred ---CCCCCEEEEeecC------C----H--------HH-----------HHHHHHHhCCCcEEEEEee
Confidence 4568999998521 0 1 11 3456788999999999863
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.4e-11 Score=111.25 Aligned_cols=125 Identities=19% Similarity=0.168 Sum_probs=87.2
Q ss_pred HHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc-----eEEEecCccccchhh
Q psy15212 122 QLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK-----ATLILSDISKINLKK 196 (329)
Q Consensus 122 ~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~-----v~~~~~D~~~~~~~~ 196 (329)
.+....+...++.+|||+|||+|..+..+|+. +.+|+|+|+|+.+++.++++....+.. ..+...|......
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 122 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK-- 122 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH--
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc--
Confidence 34455666677889999999999999999986 469999999999999999999887765 2344455443320
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
.......||.|++- + .++.+-|+.... .+ .+..+|+++.++|||||+|++.+.
T Consensus 123 -------------~~~~~~~fd~v~~~----~-~~~~~~~~~~~~--~~-------~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 123 -------------DVPAGDGFDAVICL----G-NSFAHLPDSKGD--QS-------EHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp -------------HSCCTTCEEEEEEC----S-SCGGGSCCTTSS--SH-------HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------ccCCCCCceEEEEe----c-CchhhcCCcccC--hH-------HHHHHHHHHHHHcCcCcEEEEeec
Confidence 11134689999952 1 223333322111 11 245689999999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.7e-11 Score=105.50 Aligned_cols=132 Identities=12% Similarity=0.062 Sum_probs=94.4
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc------------------CCceEEE
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL------------------NLKATLI 185 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~------------------g~~v~~~ 185 (329)
...++.+.+|.+|||+|||.|..+..+|+. |..|+|+|+|+.+++.++++.... +..++++
T Consensus 37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp HHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 445567788999999999999999999985 569999999999999988876532 2236788
Q ss_pred ecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC
Q psy15212 186 LSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML 265 (329)
Q Consensus 186 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L 265 (329)
++|+..+. . .....||+|+. .+++..- .+++ ....++.+.++|
T Consensus 116 ~~d~~~l~----------------~-~~~~~fd~i~~------~~~l~~~-------~~~~-------r~~~~~~~~~~L 158 (229)
T d2bzga1 116 CCSIFDLP----------------R-TNIGKFDMIWD------RGALVAI-------NPGD-------RKCYADTMFSLL 158 (229)
T ss_dssp ESCGGGGG----------------G-SCCCCEEEEEE------SSSTTTS-------CGGG-------HHHHHHHHHHTE
T ss_pred Ecchhhcc----------------c-cccCceeEEEE------EEEEEec-------cchh-------hHHHHHHHHhhc
Confidence 88887764 1 23568999973 2222111 1111 245788899999
Q ss_pred CCCCEEEEEcCCCCccc--------cHHHHHHHHhh
Q psy15212 266 KPGGKLLFVTCSLWFEE--------SEEQAIIFSKN 293 (329)
Q Consensus 266 kpgG~lvysTCS~~~~E--------ne~vv~~~l~~ 293 (329)
||||++++.+++..+.+ .++.+..++..
T Consensus 159 kpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~ 194 (229)
T d2bzga1 159 GKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK 194 (229)
T ss_dssp EEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT
T ss_pred CCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC
Confidence 99999999988765432 34556666654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.23 E-value=4.2e-12 Score=106.70 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=82.0
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC-------------ceEEEecCccccch
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL-------------KATLILSDISKINL 194 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~-------------~v~~~~~D~~~~~~ 194 (329)
|.+.||.+|||+|||+|..+..+|+. |.+|+|+|+|+.+++.++++.+..+. .++++.+|+..+..
T Consensus 16 l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 16 LNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 56889999999999999999999986 56999999999999999999865533 13556666655430
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.....||.|++- +++..- ..+ .....++++++.|||||+++..
T Consensus 95 -----------------~~~~~~D~i~~~------~~l~~l-------~~~-------~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 95 -----------------RDIGHCAAFYDR------AAMIAL-------PAD-------MRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp -----------------HHHHSEEEEEEE------SCGGGS-------CHH-------HHHHHHHHHHHHSCSEEEEEEE
T ss_pred -----------------ccccceeEEEEE------eeeEec-------chh-------hhHHHHHHHHHhcCCCcEEEEE
Confidence 123579999741 221111 111 1245789999999999998877
Q ss_pred cCCCC
Q psy15212 275 TCSLW 279 (329)
Q Consensus 275 TCS~~ 279 (329)
+.+..
T Consensus 138 ~~~~~ 142 (201)
T d1pjza_ 138 TLEYD 142 (201)
T ss_dssp EESSC
T ss_pred Ecccc
Confidence 65543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.4e-11 Score=108.32 Aligned_cols=177 Identities=14% Similarity=-0.016 Sum_probs=100.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEE-----ecCcc----ccc--hhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLI-----LSDIS----KIN--LKKLY 198 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~-----~~D~~----~~~--~~~~~ 198 (329)
..+|.+|||+|||+|..+..++......|+|+|+|+.+++.+++++++.+...... ..+.. ... ...+.
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45688999999999999887776533589999999999999999998765432110 00000 000 00000
Q ss_pred hhhcc------cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy15212 199 IDINK------KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLL 272 (329)
Q Consensus 199 ~~~~~------~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lv 272 (329)
..... ..+........+.||+|++- .++.+ +.........+++++.++|||||+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~------~~l~~------------~~~~~~~~~~~l~~i~~~LkpGG~li 190 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTL------LAMEC------------ACCSLDAYRAALCNLASLLKPGGHLV 190 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEE------SCHHH------------HCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeeh------hhHHH------------hcccHHHHHHHHHHHHhccCCCcEEE
Confidence 00000 00000011245789999841 12111 10111234568899999999999999
Q ss_pred EEcCCCCc------------cccHHHHHHHHhhCCCcEEecCC--CcccCCCCCCCCCCeEEEEEEEec
Q psy15212 273 FVTCSLWF------------EESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQKR 327 (329)
Q Consensus 273 ysTCS~~~------------~Ene~vv~~~l~~~~~~~~~~~~--~~~~p~~~~~~~~~gff~a~l~k~ 327 (329)
.++..-.. .-+++.+..++++. +|+.+... .+.++.. ....+|.|+..-||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~~~~~~~~~~~~--~~~~~~~~~v~arKk 256 (257)
T d2a14a1 191 TTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA-GFDIEQLLHSPQSYSVT--NAANNGVCCIVARKK 256 (257)
T ss_dssp EEEESSCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEEEEECCCCCTT--TCCCCCEEEEEEEEC
T ss_pred EEEecccccceeccccccccCCCHHHHHHHHHHC-CCEEEEEEEeccccccc--cCCCCcEEEEEEEeC
Confidence 87643211 01456677778776 77655431 1111211 145567777777775
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=6.1e-11 Score=104.94 Aligned_cols=148 Identities=10% Similarity=0.010 Sum_probs=95.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
+.-+|||+|||+|..++.++...+ .+++|+|+++..++.+++|++++++. +.++..+........+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~----------- 129 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL----------- 129 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTS-----------
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhh-----------
Confidence 345899999999999999998776 79999999999999999999999986 6677665433210000
Q ss_pred ccccCCCCCCEEEEccCCcccccccc----------CCCCcccCChhHH-HH--HHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRR----------NPDIPWLRRKNDI-KK--LSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~----------~p~~~~~~~~~~~-~~--l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....++||.|+++||+-.+.-... .|.....-....+ .. -.....++++.+..+++..|.+..
T Consensus 130 -~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~-- 206 (250)
T d2h00a1 130 -KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC-- 206 (250)
T ss_dssp -TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEE--
T ss_pred -hhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEE--
Confidence 0012468999999999975432111 1111110000000 00 023457789999999999887642
Q ss_pred CCCCccccHHHHHHHHhhC
Q psy15212 276 CSLWFEESEEQAIIFSKNH 294 (329)
Q Consensus 276 CS~~~~Ene~vv~~~l~~~ 294 (329)
=++..++-..|...|++.
T Consensus 207 -~ig~~~~l~~i~~~L~~~ 224 (250)
T d2h00a1 207 -MLGKKCSLAPLKEELRIQ 224 (250)
T ss_dssp -EESSTTSHHHHHHHHHHT
T ss_pred -EecchhhHHHHHHHHHHc
Confidence 245566766677777776
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.21 E-value=1.1e-11 Score=110.07 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=94.4
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
..+...++.+|||+|||+|..|.+++......|+++|.++.+++.+++++...+ .++++++|+.++.
T Consensus 87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~------------ 153 (254)
T d1xtpa_ 87 ASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETAT------------ 153 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCC------------
T ss_pred hhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc-cceeEEccccccc------------
Confidence 344456778999999999999999886555699999999999999998875432 1788899988775
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc-CCCCcc---
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-CSLWFE--- 281 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT-CS~~~~--- 281 (329)
+.++.||+|++-- ++.+- +..+ ..++|+++.+.|+|||+++++. |.....
T Consensus 154 ------~~~~~fD~I~~~~------vl~hl-------~d~d-------~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~ 207 (254)
T d1xtpa_ 154 ------LPPNTYDLIVIQW------TAIYL-------TDAD-------FVKFFKHCQQALTPNGYIFFKENCSTGDRFLV 207 (254)
T ss_dssp ------CCSSCEEEEEEES------CGGGS-------CHHH-------HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE
T ss_pred ------cCCCccceEEeec------ccccc-------chhh-------hHHHHHHHHHhcCCCcEEEEEecCCCCCccee
Confidence 3467899999632 22111 1111 2468999999999999999864 221110
Q ss_pred --c------cHHHHHHHHhhCCCcEEe
Q psy15212 282 --E------SEEQAIIFSKNHKDSIRL 300 (329)
Q Consensus 282 --E------ne~vv~~~l~~~~~~~~~ 300 (329)
+ .++....++++. +++++
T Consensus 208 d~~d~~~~rs~~~~~~l~~~a-Gf~ii 233 (254)
T d1xtpa_ 208 DKEDSSLTRSDIHYKRLFNES-GVRVV 233 (254)
T ss_dssp ETTTTEEEBCHHHHHHHHHHH-TCCEE
T ss_pred cccCCceeCCHHHHHHHHHHc-CCEEE
Confidence 1 345566666665 55544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=1e-10 Score=104.52 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=84.8
Q ss_pred CCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
..+|+|+|||+|..++.+++.-..+|+|+|+|+..++.+++|++++|+. +.+..+|..... .
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~----------------~ 174 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----------------K 174 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----------------G
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc----------------c
Confidence 4589999999999999998765589999999999999999999999996 677788876643 1
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHH----HHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDI----KKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~----~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
...++||+|++||||-.+.-. ..++.+|. +... ..-....++++. ++|+|||.+++-
T Consensus 175 -~~~~~fDlIVsNPPYI~~~~~-l~~~~~~E--P~~AL~gg~dGl~~~r~i~~---~~L~~~G~l~~E 235 (271)
T d1nv8a_ 175 -EKFASIEMILSNPPYVKSSAH-LPKDVLFE--PPEALFGGEDGLDFYREFFG---RYDTSGKIVLME 235 (271)
T ss_dssp -GGTTTCCEEEECCCCBCGGGS-CTTSCCCS--CHHHHBCTTTSCHHHHHHHH---HCCCTTCEEEEE
T ss_pred -cccCcccEEEEcccccCcccc-cceeeeec--cccccccccchHHHHHHHHH---HhcCCCCEEEEE
Confidence 123689999999999765421 12233321 1110 001123445553 689999988864
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.17 E-value=1.3e-10 Score=102.63 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKL 197 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~ 197 (329)
...+...++..+..+|||+|||+|..+..+++..+ .+++++|+ +..++.+++++...|+. ++++.+|+.+..
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---- 143 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---- 143 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc----
Confidence 33445566667778999999999999999999887 79999998 67899999999999885 899999986532
Q ss_pred hhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 198 YIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
...||+|++- .++.. ++.++ ..++|+++.+.|||||+|+.....
T Consensus 144 ----------------~~~~D~v~~~------~vlh~-------~~d~~-------~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 144 ----------------PRKADAIILS------FVLLN-------WPDHD-------AVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp ----------------SSCEEEEEEE------SCGGG-------SCHHH-------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ----------------ccchhheeec------ccccc-------CCchh-------hHHHHHHHHHhcCCCcEEEEEecc
Confidence 2579999852 22211 22222 246899999999999999887544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.16 E-value=6.3e-11 Score=112.61 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=118.3
Q ss_pred ceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--------------CEEEEEeCChhHHHHHHHHHHH
Q psy15212 112 GFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--------------IKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 112 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--------------~~v~avD~~~~rl~~l~~n~~~ 177 (329)
|.++--..-+.+.+.++.+.++.+|+|.|||+|++.+.+.+.+. ..++|+|+++.....++.|+.-
T Consensus 142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l 221 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL 221 (425)
T ss_dssp GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence 66666566677888899999999999999999999999887542 2499999999999999999988
Q ss_pred cCCc---eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCC-CcccCChhHHHHHHHH
Q psy15212 178 LNLK---ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPD-IPWLRRKNDIKKLSKY 253 (329)
Q Consensus 178 ~g~~---v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~-~~~~~~~~~~~~l~~~ 253 (329)
.|.. ..+...|..... ...+||+||.+||++....-..... ..+...... .
T Consensus 222 ~g~~~~~~~i~~~d~l~~~-------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~------~ 276 (425)
T d2okca1 222 HGIGTDRSPIVCEDSLEKE-------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKN------N 276 (425)
T ss_dssp TTCCSSCCSEEECCTTTSC-------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSC------H
T ss_pred cCCccccceeecCchhhhh-------------------cccccceEEecCCCCCCccccchhhhhhccccccc------H
Confidence 8774 457777766433 3468999999999964432211111 011111111 2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcC--CCCccc-cHHHHHHHHhhCCCcEEecCCCcccCC
Q psy15212 254 SCKILNNLWKMLKPGGKLLFVTC--SLWFEE-SEEQAIIFSKNHKDSIRLNSPGQLLPT 309 (329)
Q Consensus 254 q~~lL~~a~~~LkpgG~lvysTC--S~~~~E-ne~vv~~~l~~~~~~~~~~~~~~~~p~ 309 (329)
+..++.+++++|++||++++.+- ++.... .+.+.+++++.+.-..++..|..++++
T Consensus 277 ~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~ 335 (425)
T d2okca1 277 QLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYA 335 (425)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEECCSSSSSS
T ss_pred HHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhcchhHhhcCCcccccC
Confidence 44589999999999998887754 343333 345566666665222334455555554
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.16 E-value=3.5e-11 Score=104.43 Aligned_cols=100 Identities=22% Similarity=0.247 Sum_probs=77.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++.. -.+.++.+|+..+.
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~----------------- 77 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQ----------------- 77 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCC-----------------
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhcccc---cccccccccccccc-----------------
Confidence 456799999999999999998754 589999999999999987643 23788888887754
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH-hcCCCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW-KMLKPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~-~~LkpgG~lvysT 275 (329)
.+++||.|++ .+++.+-++ ...+|.++. ++|+|||.++.++
T Consensus 78 --~~~~fD~I~~------~~vleh~~d----------------~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 78 --LPRRYDNIVL------THVLEHIDD----------------PVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp --CSSCEEEEEE------ESCGGGCSS----------------HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --cccccccccc------cceeEecCC----------------HHHHHHHHHHHhcCCCceEEEEe
Confidence 3478999985 345543332 345677777 7899999999875
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.8e-10 Score=97.71 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=109.3
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
.++...+.......+||++|+|.|.-|+.+|+.++ ++|+++|.++...+.+++++++.|+. ++++.+|+.+.. +.
T Consensus 48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l-~~ 126 (219)
T d2avda1 48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL-DE 126 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-HH
T ss_pred HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc-hh
Confidence 44555555445556999999999999999998876 89999999999999999999999986 899999987642 11
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+. .......||.|++|+--+ .+...++.+.++|+|||.+++-..
T Consensus 127 ~~-----------~~~~~~~fD~ifiD~dk~-------------------------~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 127 LL-----------AAGEAGTFDVAVVDADKE-------------------------NCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HH-----------HTTCTTCEEEEEECSCST-------------------------THHHHHHHHHHHEEEEEEEEEECC
T ss_pred hh-----------hhcccCCccEEEEeCCHH-------------------------HHHHHHHHHHHHhcCCcEEEEeCC
Confidence 10 111346899999997522 134567888899999999998765
Q ss_pred CCC-----cc---ccHHHHHHH---HhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 277 SLW-----FE---ESEEQAIIF---SKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 277 S~~-----~~---Ene~vv~~~---l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
-+. +. +....+++| +++++.+... ++| -+||..+|+
T Consensus 171 l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~-----llP------igdGl~ia~ 217 (219)
T d2avda1 171 LWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS-----LLP------LGDGLTLAF 217 (219)
T ss_dssp SGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE-----EEC------STTCEEEEE
T ss_pred cccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEE-----Eee------cCCeeEEEE
Confidence 433 11 122234444 4566776543 234 347877764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.8e-10 Score=101.16 Aligned_cols=167 Identities=15% Similarity=0.057 Sum_probs=98.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce---------------------------
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA--------------------------- 182 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v--------------------------- 182 (329)
...|.+|||+|||||..++..+.....+|+|+|.|+.+++.+++++++.+...
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 45688999999999988765554333599999999999999998876543211
Q ss_pred ----EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHH
Q psy15212 183 ----TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKIL 258 (329)
Q Consensus 183 ----~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL 258 (329)
.++..|..... ..+. .....+.||+|++= -++ +.+..-.......|
T Consensus 132 ~~~~~~~~~Dv~~~~----------~~~~--~~~~~~~fD~V~~~------~~l------------~~i~~~~~~~~~~l 181 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQ----------PLGA--GSPAPLPADALVSA------FCL------------EAVSPDLASFQRAL 181 (263)
T ss_dssp HHEEEEECCCTTSSS----------TTCS--SCSSCSSEEEEEEE------SCH------------HHHCSSHHHHHHHH
T ss_pred hhhhccccccccCCC----------cccc--CCcCcCccCeeeeH------HHH------------HHHccCHHHHHHHH
Confidence 12223332211 0000 01234579999851 111 01100011246789
Q ss_pred HHHHhcCCCCCEEEEEcCCC------------CccccHHHHHHHHhhCCCcEEecCCCcccCCCC--CCCCCCeEEEEEE
Q psy15212 259 NNLWKMLKPGGKLLFVTCSL------------WFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVN--KKQDYDGFFYSLF 324 (329)
Q Consensus 259 ~~a~~~LkpgG~lvysTCS~------------~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~--~~~~~~gff~a~l 324 (329)
+++.++|||||+|++++--- +..=+++.+...+... +++.+.......|... ...+.+|+|++.=
T Consensus 182 ~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~a-Gf~v~~~~~~~~~~~~~~~~~d~~~~~~~~A 260 (263)
T d2g72a1 182 DHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRS-GYKVRDLRTYIMPAHLQTGVDDVKGVFFAWA 260 (263)
T ss_dssp HHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHT-TEEEEEEEEEECCGGGCCTTBCCCEEEEEEE
T ss_pred HHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHC-CCeEEEEEEeeccCcccccccccceEEEEEE
Confidence 99999999999999864210 1112667777788776 6765543222222110 1135678888887
Q ss_pred Eec
Q psy15212 325 QKR 327 (329)
Q Consensus 325 ~k~ 327 (329)
||.
T Consensus 261 rK~ 263 (263)
T d2g72a1 261 QKV 263 (263)
T ss_dssp EEC
T ss_pred EeC
Confidence 773
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=6e-11 Score=108.03 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=81.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
...+|.+|||+|||+|..++.+|+....+|+|+|.++.+.. ++++..+.+.. +.++.+|+.++.
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~------------- 97 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVH------------- 97 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSC-------------
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhc-------------
Confidence 45678999999999999999999864469999999998764 56666666664 899999998875
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
....+||+|+++..-+. .. .+. ....++....++|||||+++-+.++
T Consensus 98 -----~~~~~~D~Ivse~~~~~--~~----------~e~-------~~~~~~~a~~~~Lkp~G~iip~~~~ 144 (311)
T d2fyta1 98 -----LPVEKVDVIISEWMGYF--LL----------FES-------MLDSVLYAKNKYLAKGGSVYPDICT 144 (311)
T ss_dssp -----CSCSCEEEEEECCCBTT--BT----------TTC-------HHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred -----CccccceEEEEeeeeee--cc----------ccc-------ccHHHHHHHHhcCCCCcEEeccccc
Confidence 24579999998765331 11 011 1234566667789999999854444
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=2.5e-10 Score=104.64 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=82.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+|.+|||+|||+|..+..+|++...+|+|+|.++ +++.++++.+..+.. ++++.+|+.++.
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-------------- 100 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-------------- 100 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--------------
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc--------------
Confidence 457899999999999999988876446999999986 678899999998885 889999988875
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+++++||.|+++..-.. .. .... ...++....++|||||+++=+.+
T Consensus 101 ----~~~~~~D~i~se~~~~~--~~----------~e~~-------~~~~~~a~~r~LkpgG~iiP~~~ 146 (328)
T d1g6q1_ 101 ----LPFPKVDIIISEWMGYF--LL----------YESM-------MDTVLYARDHYLVEGGLIFPDKC 146 (328)
T ss_dssp ----CSSSCEEEEEECCCBTT--BS----------TTCC-------HHHHHHHHHHHEEEEEEEESCEE
T ss_pred ----CcccceeEEEEEeccee--ec----------cchh-------HHHHHHHHHhccCCCeEEEeeec
Confidence 34678999998654221 10 0111 23456667789999999964433
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=2.7e-10 Score=103.93 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=82.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+|.+|||+|||+|..+..+|++...+|+|+|.++. ...++++.+++++. +.++.+|+.++.
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~-------------- 95 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE-------------- 95 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC--------------
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc--------------
Confidence 4578999999999999999888854469999999975 57788888888885 899999998875
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...++||.|+++...+. .. .+.. ...++....++|||||.++=+.+
T Consensus 96 ----~~~~~~D~ivs~~~~~~--l~----------~e~~-------~~~~l~~~~r~Lkp~G~iiP~~~ 141 (316)
T d1oria_ 96 ----LPVEKVDIIISEWMGYC--LF----------YESM-------LNTVLHARDKWLAPDGLIFPDRA 141 (316)
T ss_dssp ----CSSSCEEEEEECCCBBT--BT----------BTCC-------HHHHHHHHHHHEEEEEEEESCEE
T ss_pred ----cccceeEEEeeeeeeee--ec----------cHHH-------HHHHHHHHHhcCCCCeEEEeeeE
Confidence 34578999998755332 11 1111 23567788899999999974433
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=2.5e-10 Score=96.04 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=101.6
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..+|.+++|+.++|+++|.||.+..+++. +++|+|+|.++.+++.++.. ..-.+.+++.+..++. ...
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~---~~~~~~~~~~~f~~~~--~~l------ 78 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLK--RHL------ 78 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHH--HHH------
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc---cccceeEeehHHHHHH--HHH------
Confidence 34567999999999999999999999986 46999999999999887753 2212788888877754 000
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccH
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESE 284 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene 284 (329)
.....+.+|.||.|--+|+...= +| .+-...+...|..+..+|++||++++.|. +..|+
T Consensus 79 -----~~~~~~~vdgIl~DLGvSs~qld--~~-----------~re~~~~~~~L~~~~~~lk~gg~~~ii~f--hs~Ed- 137 (182)
T d1wg8a2 79 -----AALGVERVDGILADLGVSSFHLD--DP-----------SDELNALKEFLEQAAEVLAPGGRLVVIAF--HSLED- 137 (182)
T ss_dssp -----HHTTCSCEEEEEEECSCCHHHHH--CG-----------GTHHHHHHHHHHHHHHHEEEEEEEEEEEC--SHHHH-
T ss_pred -----HHcCCCccCEEEEEccCCHHHhh--cc-----------hHHHHHHHHHHHHHHhhhCCCCeEEEEec--ccchh-
Confidence 11234689999999988866541 11 11123355689999999999999998764 56555
Q ss_pred HHHHHHHhhCCCcEEe
Q psy15212 285 EQAIIFSKNHKDSIRL 300 (329)
Q Consensus 285 ~vv~~~l~~~~~~~~~ 300 (329)
..|..+++.+ .++.+
T Consensus 138 ~ivk~~~~e~-~~k~i 152 (182)
T d1wg8a2 138 RVVKRFLRES-GLKVL 152 (182)
T ss_dssp HHHHHHHHHH-CSEES
T ss_pred HHHHHHHhhc-cceec
Confidence 4566666654 45544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=3.2e-10 Score=95.23 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=99.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.+++..|||+|||||+++..+++..+ +.|+++|+.+-. .++ +.++.+|..........
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~-------- 80 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKAL-------- 80 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHH--------
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchhhhhh--------
Confidence 46899999999999999999998765 799999986521 244 78888988764310000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.......+||+|++|.....+|.- ..+-.....+-...|.-|.+.|++||.+|. -+...+....
T Consensus 81 --~~~~~~~~~DlVlSD~ap~~sg~~-----------~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~---K~F~g~~~~~ 144 (180)
T d1ej0a_ 81 --LERVGDSKVQVVMSDMAPNMSGTP-----------AVDIPRAMYLVELALEMCRDVLAPGGSFVV---KVFQGEGFDE 144 (180)
T ss_dssp --HHHHTTCCEEEEEECCCCCCCSCH-----------HHHHHHHHHHHHHHHHHHHHHEEEEEEEEE---EEESSTTHHH
T ss_pred --hhhccCcceeEEEecccchhcccc-----------hhHHHHHHHHHHHHHHhhhhccCCCCcEEE---EEecCccHHH
Confidence 011234689999999765444431 122333344455667888999999999994 4444444445
Q ss_pred HHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEEEE
Q psy15212 287 AIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 287 v~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~l~ 325 (329)
+...++.+ |..+. .+=|...+....+-|++|+=.
T Consensus 145 l~~~l~~~--F~~V~---~~KP~aSR~~SsE~Ylv~~g~ 178 (180)
T d1ej0a_ 145 YLREIRSL--FTKVK---VRKPDSSRARSREVYIVATGR 178 (180)
T ss_dssp HHHHHHHH--EEEEE---EECCTTSCTTCCEEEEEEEEE
T ss_pred HHHHHHhh--cCEEE---EECCCCcccCCceEEEEEecC
Confidence 55556654 33222 122444444677888888643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.2e-10 Score=104.08 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=81.5
Q ss_pred hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-------CC---ceEEEecCccccc
Q psy15212 125 APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-------NL---KATLILSDISKIN 193 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-------g~---~v~~~~~D~~~~~ 193 (329)
...++++++++|||+|||.|..+.++|...+ .+++|+|+++.+++.++++.+.. |. +++++++|+.+.+
T Consensus 144 ~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~ 223 (328)
T d1nw3a_ 144 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE 223 (328)
T ss_dssp HHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH
T ss_pred HHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc
Confidence 3556789999999999999999999998877 68999999999999988876653 33 3889999998765
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
... .-...|+|+++--|. . .+ ....|.+.++.|||||++|.
T Consensus 224 ~~~----------------~~~~advi~~~~~~f---------------~-~~-------~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 224 WRE----------------RIANTSVIFVNNFAF---------------G-PE-------VDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp HHH----------------HHHHCSEEEECCTTT---------------C-HH-------HHHHHHHHHTTCCTTCEEEE
T ss_pred ccc----------------ccCcceEEEEcceec---------------c-hH-------HHHHHHHHHHhCCCCcEEEE
Confidence 110 001357887642211 1 11 12457788899999999985
Q ss_pred E
Q psy15212 274 V 274 (329)
Q Consensus 274 s 274 (329)
.
T Consensus 265 ~ 265 (328)
T d1nw3a_ 265 S 265 (328)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.01 E-value=2e-09 Score=93.61 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=92.0
Q ss_pred HHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhh
Q psy15212 121 AQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKK 196 (329)
Q Consensus 121 s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~ 196 (329)
.++...++......+||++|++.|.-|+.+|+.++ ++|+++|.++...+.+++++++.|+. ++++.+|+...- +.
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L-~~ 126 (227)
T d1susa1 48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL-DE 126 (227)
T ss_dssp HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH-HH
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHH-HH
Confidence 34444444444456999999999999999998876 89999999999999999999999996 899999987642 11
Q ss_pred hhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 197 LYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+.- .....+.||.|++|+-=+ .+...++.+.++|+|||.+++-..
T Consensus 127 l~~----------~~~~~~~fD~iFiDa~k~-------------------------~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 127 MIK----------DEKNHGSYDFIFVDADKD-------------------------NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHH----------CGGGTTCBSEEEECSCST-------------------------THHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHh----------ccccCCceeEEEeccchh-------------------------hhHHHHHHHHhhcCCCcEEEEccC
Confidence 110 001246899999997411 134567788899999999998765
Q ss_pred C
Q psy15212 277 S 277 (329)
Q Consensus 277 S 277 (329)
-
T Consensus 172 l 172 (227)
T d1susa1 172 L 172 (227)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=5.4e-10 Score=96.42 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=106.7
Q ss_pred hhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC--CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccch
Q psy15212 119 AAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD--IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINL 194 (329)
Q Consensus 119 ~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~--~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~ 194 (329)
...++...++......+||++|+|.|.-|+.+|+.++ ++|+++|+++..++.+++++++.|+. ++++.+|+.+..
T Consensus 43 ~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l- 121 (214)
T d2cl5a1 43 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI- 121 (214)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG-
T ss_pred HHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccc-
Confidence 3344444444433446999999999999999998765 79999999999999999999999995 899999987642
Q ss_pred hhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 195 KKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
+.+. .......||.|++|.--+. .. ....+..++++|+|||.||+-
T Consensus 122 ~~l~-----------~~~~~~~~D~ifiD~~~~~-----------------~~------~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 122 PQLK-----------KKYDVDTLDMVFLDHWKDR-----------------YL------PDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp GGHH-----------HHSCCCCEEEEEECSCGGG-----------------HH------HHHHHHHHTTCEEEEEEEEES
T ss_pred cchh-----------hcccccccceeeecccccc-----------------cc------cHHHHHHHhCccCCCcEEEEe
Confidence 1110 0123467999999954220 00 112466788999999987764
Q ss_pred cCCCCccccHHHHHHHHhhCCCcEEecCC--CcccCCCCCCCCCCeEEEEEEE
Q psy15212 275 TCSLWFEESEEQAIIFSKNHKDSIRLNSP--GQLLPTVNKKQDYDGFFYSLFQ 325 (329)
Q Consensus 275 TCS~~~~Ene~vv~~~l~~~~~~~~~~~~--~~~~p~~~~~~~~~gff~a~l~ 325 (329)
.. +.+. .++.. ...+..+.+.....+ ..+.| -.||+=++.++
T Consensus 168 dv-l~~g-~~~~~-~~vr~~~~~~~~~~~~~~~~~~------~~dgl~~s~~~ 211 (214)
T d2cl5a1 168 NV-IVPG-TPDFL-AYVRGSSSFECTHYSSYLEYMK------VVDGLEKAIYQ 211 (214)
T ss_dssp CC-CCCC-CHHHH-HHHHHCTTEEEEEEEEECTTSS------SEEEEEEEEEC
T ss_pred Cc-CCCC-ChHHH-HHHhccCceeehhhhhcceecc------cCCceEEEEec
Confidence 43 3332 22333 334556666543321 11233 34677666654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=4.5e-10 Score=109.37 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=111.9
Q ss_pred cceEEEechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-------------------CEEEEEeCChhHHHHH
Q psy15212 111 NGFCSIQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-------------------IKLISVDNNLSRLNMI 171 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-------------------~~v~avD~~~~rl~~l 171 (329)
.|.|+--..-+.+.+.++.+.++.+|+|.|||+|++.+.+.+.+. ..++|+|+++.....+
T Consensus 143 ~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 143 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 377776666778888899999999999999999999998876431 2589999999999999
Q ss_pred HHHHHHcCCceE------EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChh
Q psy15212 172 SENLKRLNLKAT------LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKN 245 (329)
Q Consensus 172 ~~n~~~~g~~v~------~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~ 245 (329)
+-|+--.|.... +...|....+ .....+||+|+.|||++...-....... .....
T Consensus 223 ~~nl~l~~~~~~i~~~~~~~~~~~l~~d-----------------~~~~~kfD~Ii~NPPfg~~~~~~~~~~~--~~~~~ 283 (524)
T d2ar0a1 223 LMNCLLHDIEGNLDHGGAIRLGNTLGSD-----------------GENLPKAHIVATNPPFGSAAGTNITRTF--VHPTS 283 (524)
T ss_dssp HHHHHTTTCCCBGGGTBSEEESCTTSHH-----------------HHTSCCEEEEEECCCCTTCSSCCCCSCC--SSCCS
T ss_pred HHHHHhhcccccccccchhhhhhhhhhc-----------------ccccccceeEEecCCccccccccchhhh--ccccc
Confidence 999987776422 2222322211 1134689999999999754432221111 00011
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC-CC-CccccHH-HHHHHHhhCCCc-EEecCCCcccCC
Q psy15212 246 DIKKLSKYSCKILNNLWKMLKPGGKLLFVTC-SL-WFEESEE-QAIIFSKNHKDS-IRLNSPGQLLPT 309 (329)
Q Consensus 246 ~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC-S~-~~~Ene~-vv~~~l~~~~~~-~~~~~~~~~~p~ 309 (329)
. .+..++.++++.|++||++++.+- ++ +..-.+. +.+++++++ .+ .++..|..++++
T Consensus 284 ~------~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~-~i~aII~LP~~~F~~ 344 (524)
T d2ar0a1 284 N------KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTILRLPTGIFYA 344 (524)
T ss_dssp C------HHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEEECCSSCSSS
T ss_pred c------ccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC-CceEEEECCCCcCCC
Confidence 1 234589999999999999988863 33 2333333 455555554 33 234455555543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.97 E-value=2.4e-09 Score=94.60 Aligned_cols=110 Identities=22% Similarity=0.186 Sum_probs=84.6
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~ 202 (329)
..++.....+|||+|||+|..+..+++..+ .+++++|+ +..++.++++++..|+. +.++.+|.....
T Consensus 75 ~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~--------- 144 (256)
T d1qzza2 75 DAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------- 144 (256)
T ss_dssp HTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------
T ss_pred hcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---------
Confidence 344556677999999999999999999987 79999997 78899999999999885 788888876532
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+..||+|++- .++. .++.++ ..++|+++.+.|||||+++...-
T Consensus 145 -----------p~~~D~v~~~------~vLh-------~~~d~~-------~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 145 -----------PVTADVVLLS------FVLL-------NWSDED-------ALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp -----------SCCEEEEEEE------SCGG-------GSCHHH-------HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -----------cccchhhhcc------cccc-------ccCcHH-------HHHHHHHHHhhcCCcceeEEEEe
Confidence 2469999852 1221 222222 35689999999999999887653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=2.8e-09 Score=100.07 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=77.4
Q ss_pred hhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC-------Cc---eEE-EecCccccc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN-------LK---ATL-ILSDISKIN 193 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g-------~~---v~~-~~~D~~~~~ 193 (329)
..+++++|++|||+|||.|..+.++|...+ ++|+|+|+++.+++.++++.+..+ .. ..+ ..+|.....
T Consensus 210 ~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~ 289 (406)
T d1u2za_ 210 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN 289 (406)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred HHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc
Confidence 445789999999999999999999998877 599999999999999999987643 22 222 334443322
Q ss_pred hhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 194 LKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.. +. .-..+|+|+++-=|. . .+ ....|.+.++.|||||++|.
T Consensus 290 ~~----------d~-----~~~~adVV~inn~~f---------------~-~~-------l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 290 RV----------AE-----LIPQCDVILVNNFLF---------------D-ED-------LNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp HH----------HH-----HGGGCSEEEECCTTC---------------C-HH-------HHHHHHHHHTTCCTTCEEEE
T ss_pred cc----------cc-----ccccceEEEEecccC---------------c-hH-------HHHHHHHHHHhcCCCcEEEE
Confidence 00 00 013578888752211 1 11 23467888999999999985
Q ss_pred E
Q psy15212 274 V 274 (329)
Q Consensus 274 s 274 (329)
+
T Consensus 332 ~ 332 (406)
T d1u2za_ 332 L 332 (406)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.88 E-value=1.2e-09 Score=101.81 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=87.6
Q ss_pred cceEE--EechhHHHHhhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc------
Q psy15212 111 NGFCS--IQDAAAQLAAPLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK------ 181 (329)
Q Consensus 111 ~G~~~--~Qd~~s~l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~------ 181 (329)
.+-|| .|.....+.+.++..-.+.+|||+.||+|..++..|...+ .+|+++|+|+..++.+++|++.+++.
T Consensus 22 ~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~ 101 (375)
T d2dula1 22 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESK 101 (375)
T ss_dssp -CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECS
T ss_pred CCcccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccc
Confidence 34455 4555555544444434577999999999999998887666 59999999999999999999998764
Q ss_pred ----------eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH
Q psy15212 182 ----------ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS 251 (329)
Q Consensus 182 ----------v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~ 251 (329)
+.+...|+.... ....+.||+|.+||. |+.
T Consensus 102 ~~~~~~~~~~~~~~~~Da~~~~-----------------~~~~~~fDvIDiDPf--Gs~--------------------- 141 (375)
T d2dula1 102 GRAILKGEKTIVINHDDANRLM-----------------AERHRYFHFIDLDPF--GSP--------------------- 141 (375)
T ss_dssp SEEEEESSSEEEEEESCHHHHH-----------------HHSTTCEEEEEECCS--SCC---------------------
T ss_pred ccccccccceeEeehhhhhhhh-----------------HhhcCcCCcccCCCC--CCc---------------------
Confidence 234444443321 013467999999984 221
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 252 KYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 252 ~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+|+.|++.++.||.| +.|||
T Consensus 142 ---~pfldsAi~a~~~~Gll-~vTaT 163 (375)
T d2dula1 142 ---MEFLDTALRSAKRRGIL-GVTAT 163 (375)
T ss_dssp ---HHHHHHHHHHEEEEEEE-EEEEC
T ss_pred ---HHHHHHHHHHhccCCEE-EEEec
Confidence 24799999999988855 45666
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.4e-09 Score=97.04 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhC----C---CEEEEEeCChhHHHHHHHHHHHcCC-c-e--EEEecCccccchhhhh
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIA----D---IKLISVDNNLSRLNMISENLKRLNL-K-A--TLILSDISKINLKKLY 198 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~----~---~~v~avD~~~~rl~~l~~n~~~~g~-~-v--~~~~~D~~~~~~~~~~ 198 (329)
.+++.+|||+|||+|..+..++..+ + ..++|+|+|+.+++.+++++++... . + .+...++..+..
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 113 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQS---- 113 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHH----
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcc----
Confidence 4455589999999999998887642 2 4789999999999999999876532 2 3 344444332210
Q ss_pred hhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 199 IDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+. . ....+++||+|++ ..++...++ ....|+++.++|+|||.|+..+.+
T Consensus 114 -~~----~---~~~~~~~fD~I~~------~~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 114 -RM----L---EKKELQKWDFIHM------IQMLYYVKD----------------IPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp -HH----T---TSSSCCCEEEEEE------ESCGGGCSC----------------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -hh----c---ccCCCCceeEEEE------ccceecCCC----------------HHHHHHHHHhhCCCCCEEEEEEec
Confidence 00 0 1124679999985 233322222 235799999999999999887543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=5.9e-08 Score=87.18 Aligned_cols=135 Identities=18% Similarity=0.178 Sum_probs=91.4
Q ss_pred ccccceEEEechh-----HHHH--hhhcCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC
Q psy15212 108 KFFNGFCSIQDAA-----AQLA--APLLDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN 179 (329)
Q Consensus 108 ~~~~G~~~~Qd~~-----s~l~--~~~l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g 179 (329)
.+.+|.+..-+.. .+++ +.++.+.| .+||-+|.|.|+.+..+++..+ .+|++||+++..++.+++-+....
T Consensus 59 l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~p-k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~ 137 (295)
T d1inla_ 59 FALDGITMTTEKDEFMYHEMLAHVPMFLHPNP-KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS 137 (295)
T ss_dssp EEETTEEEEETTTHHHHHHHHHHHHHHHSSSC-CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH
T ss_pred EEECCEEEEecCchhhhhhhhcchhHhhCCCC-ceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc
Confidence 3456666654332 3333 33344554 5999999999999999987665 699999999999999998765431
Q ss_pred --C---ceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHH
Q psy15212 180 --L---KATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYS 254 (329)
Q Consensus 180 --~---~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q 254 (329)
. +++++.+|+..+- .. .+++||+|++|++....|.. ... ..
T Consensus 138 ~~~~d~rv~v~~~Da~~~l----------------~~-~~~~yDvIi~D~~dp~~~~~----~~L-------------~t 183 (295)
T d1inla_ 138 CGFDDPRAEIVIANGAEYV----------------RK-FKNEFDVIIIDSTDPTAGQG----GHL-------------FT 183 (295)
T ss_dssp GGGGCTTEEEEESCHHHHG----------------GG-CSSCEEEEEEEC--------------C-------------CS
T ss_pred ccccCCCcEEEhhhHHHHH----------------hc-CCCCCCEEEEcCCCCCcCch----hhh-------------cc
Confidence 2 2899999998864 11 34689999999875422210 001 13
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 255 CKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 255 ~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.++++.+.+.|+|||.++.-+-|
T Consensus 184 ~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 184 EEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCcEEEEecCC
Confidence 56888999999999998875444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.58 E-value=8e-08 Score=87.08 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=82.6
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc--CC----ceEEEecCccccchhhhhhh
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL--NL----KATLILSDISKINLKKLYID 200 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~--g~----~v~~~~~D~~~~~~~~~~~~ 200 (329)
+.+. ..+||.+|.|.|+.+..+++..+ .+|++||+++..++.+++.+... +. +++++.+|+..+-
T Consensus 74 ~~~~-pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l------- 145 (312)
T d1uira_ 74 THPE-PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL------- 145 (312)
T ss_dssp HSSC-CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH-------
T ss_pred hCCC-cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHh-------
Confidence 3444 45999999999999998887655 69999999999999999987543 22 3899999999864
Q ss_pred hcccccccccccCCCCCCEEEEccCCc-cccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCT-GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCs-g~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ..+++||+|++|++-. +.+.. +...+ ..++++.+.+.|+|||.++.-+
T Consensus 146 ---------~-~~~~~yDvIi~D~~dp~~~~~~---~~~L~-------------t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 146 ---------E-RTEERYDVVIIDLTDPVGEDNP---ARLLY-------------TVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp ---------H-HCCCCEEEEEEECCCCBSTTCG---GGGGS-------------SHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---------h-hcCCcccEEEEeCCCcccccch---hhhhh-------------hHHHHHHHHHhcCCCceEEEec
Confidence 1 1346899999998522 11110 00001 2467888899999999887644
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.58 E-value=7.4e-08 Score=85.84 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=96.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc-----------CCceEEEecCccccchhhhhhh
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL-----------NLKATLILSDISKINLKKLYID 200 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~-----------g~~v~~~~~D~~~~~~~~~~~~ 200 (329)
...+||-+|.|.|+.+..+++....+|+++|+++..++.+++-+... .-+++++.+|+..+-
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l------- 144 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI------- 144 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-------
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-------
Confidence 34699999999999998887653379999999999999998755321 112899999998764
Q ss_pred hcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc-C-CC
Q psy15212 201 INKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-C-SL 278 (329)
Q Consensus 201 ~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT-C-S~ 278 (329)
. ..++||+|++|++.. .|. +... ...++++.+.+.|+|||.+|.-+ | ..
T Consensus 145 ---------~--~~~~yDvIi~D~~~~-~~~----~~~L-------------~t~eF~~~~~~~L~~~Gv~v~q~~s~~~ 195 (276)
T d1mjfa_ 145 ---------K--NNRGFDVIIADSTDP-VGP----AKVL-------------FSEEFYRYVYDALNNPGIYVTQAGSVYL 195 (276)
T ss_dssp ---------H--HCCCEEEEEEECCCC-C---------T-------------TSHHHHHHHHHHEEEEEEEEEEEEETTT
T ss_pred ---------h--ccCCCCEEEEeCCCC-CCC----cccc-------------cCHHHHHhhHhhcCCCceEEEecCCcch
Confidence 1 246899999999853 221 1100 12467888899999999887532 2 23
Q ss_pred CccccHHHHHHHHhhCCCcEEecCCCcccCCCCCCCCCCeEEEEE
Q psy15212 279 WFEESEEQAIIFSKNHKDSIRLNSPGQLLPTVNKKQDYDGFFYSL 323 (329)
Q Consensus 279 ~~~Ene~vv~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~gff~a~ 323 (329)
.++....+.+.+-+..+.......+ .|.. .+.-||.+|-
T Consensus 196 ~~~~~~~~~~tl~~~F~~v~~y~~~---vP~y---~~~w~f~~as 234 (276)
T d1mjfa_ 196 FTDELISAYKEMKKVFDRVYYYSFP---VIGY---ASPWAFLVGV 234 (276)
T ss_dssp SHHHHHHHHHHHHHHCSEEEEEEEC---CTTS---SSSEEEEEEE
T ss_pred hHHHHHHHHHHHHhhCCeeEEEEec---CcCC---CCceEEEEEe
Confidence 3444444444444444443332221 2333 3335777764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.57 E-value=5.8e-08 Score=87.74 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=80.0
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcC--C---ceEEEecCccccchhhhhhhh
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLN--L---KATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g--~---~v~~~~~D~~~~~~~~~~~~~ 201 (329)
+.+.| .+||-+|.|.|+.+..+++..+ .+|+.+|+++..++.+++-+.... . +++++.+|+..+-
T Consensus 103 ~~~~p-k~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l-------- 173 (312)
T d2b2ca1 103 AHPDP-KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL-------- 173 (312)
T ss_dssp HSSSC-CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH--------
T ss_pred cCCCC-CeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHH--------
Confidence 34444 5999999999999999987655 699999999999999998765432 1 2789999998764
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ...++||+|++|++-. .|. +. .-...++++.+.+.|+|||.++.-+
T Consensus 174 --------~-~~~~~yDvII~D~~dp-~~~----~~-------------~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 174 --------K-NHKNEFDVIITDSSDP-VGP----AE-------------SLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp --------H-HCTTCEEEEEECCC-------------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred --------H-hCCCCCCEEEEcCCCC-CCc----ch-------------hhhhHHHHHHHHhhcCCCcEEEEec
Confidence 1 1356899999998743 111 00 0123567888899999999888754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.54 E-value=1.4e-07 Score=82.02 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=69.6
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
-++..+++.++++||++|+|+|..|..+++.. .+|+|+|+++..++.++++..... .++++++|+.+++
T Consensus 12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~-n~~i~~~D~l~~~--------- 80 (235)
T d1qama_ 12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD-NFQVLNKDILQFK--------- 80 (235)
T ss_dssp HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC-SEEEECCCGGGCC---------
T ss_pred HHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhccc-chhhhhhhhhhcc---------
Confidence 34566778999999999999999999999875 599999999999999998765432 4899999999876
Q ss_pred ccccccccccCCCCCCEEEEccCCc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+.......|+.+-|+.
T Consensus 81 ---------~~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 81 ---------FPKNQSYKIFGNIPYN 96 (235)
T ss_dssp ---------CCSSCCCEEEEECCGG
T ss_pred ---------ccccccceeeeeehhh
Confidence 2233456899999986
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.53 E-value=2.2e-07 Score=82.57 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=81.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-CC----ceEEEecCccccchhhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-NL----KATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-g~----~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
...+||-+|.|.|+.+..+++..+ .+|+.+|+++..++.+++-+... +. +++++.+|+..+-
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l------------ 142 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI------------ 142 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH------------
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHH------------
Confidence 346999999999999999987655 69999999999999999976532 22 2889999998864
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
. ..+++||+|++|++... |. +...+ .+++.+.+.+.|+|||.++.-
T Consensus 143 ----~-~~~~~yDvIi~D~~~p~-~~----~~~L~-------------t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 143 ----A-KSENQYDVIMVDSTEPV-GP----AVNLF-------------TKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ----H-TCCSCEEEEEESCSSCC-SC----CCCCS-------------TTHHHHHHHHHEEEEEEEEEE
T ss_pred ----h-hcCCCCCEEEEcCCCCC-Cc----chhhc-------------cHHHHHHHHhhcCCCceEEEe
Confidence 1 13468999999998642 21 11111 245788888899999988864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.6e-07 Score=84.01 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-----CCceEEEecCccccchhhhhhhhc
Q psy15212 129 DIRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-----NLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-----g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
.+.| .+||-+|.|.|+.+..+.+..+ .+|+.+|+++..++.+++-+... .-+++++.+|++.+-
T Consensus 76 ~~~p-k~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l--------- 145 (285)
T d2o07a1 76 HPNP-RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM--------- 145 (285)
T ss_dssp SSSC-CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH---------
T ss_pred CcCc-CeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH---------
Confidence 3444 6999999999999999987655 69999999999999999876532 123899999998764
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ...++||+|++|++-. .|. +. .-...++++.+.+.|+|||.++.-+
T Consensus 146 -------~-~~~~~yDvIi~D~~~p-~~~----~~-------------~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 146 -------K-QNQDAFDVIITDSSDP-MGP----AE-------------SLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp -------H-TCSSCEEEEEEECC-----------------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred -------h-cCCCCCCEEEEcCCCC-CCc----cc-------------ccccHHHHHHHHHhcCCCCeEEEec
Confidence 1 1346899999998632 111 00 1124568888999999999988754
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=1e-06 Score=74.87 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=82.1
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
+.+|+|+|+|.|-=++.+|-..+ .+++.+|.+..++.-+++-..++|++ +++++..+.+..
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~----------------- 128 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP----------------- 128 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-----------------
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-----------------
Confidence 56999999999999999998777 79999999999999999999999997 899999888764
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
...+||.|++=|=++ -..+++-+..++++||+++.-.-
T Consensus 129 --~~~~fD~V~sRA~~~--------------------------~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 129 --SEPPFDGVISRAFAS--------------------------LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --CCSCEEEEECSCSSS--------------------------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred --cccccceehhhhhcC--------------------------HHHHHHHHHHhcCCCcEEEEECC
Confidence 346899998422211 23578889999999999887653
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.4e-06 Score=77.27 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=70.7
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~ 201 (329)
++..+++.+++.||++|+|+|..|..+++.. .+|+|+|+|+..++.+++.+...... ++++.+|+.+.+
T Consensus 13 Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-------- 83 (278)
T d1zq9a1 13 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-------- 83 (278)
T ss_dssp HHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC--------
T ss_pred HHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh--------
Confidence 3455678899999999999999999999875 59999999999999999998876553 899999998765
Q ss_pred cccccccccccCCCCCCEEEEccCCc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
...++.|+-+.|++
T Consensus 84 ------------~~~~~~vV~NLPY~ 97 (278)
T d1zq9a1 84 ------------LPFFDTCVANLPYQ 97 (278)
T ss_dssp ------------CCCCSEEEEECCGG
T ss_pred ------------hhhhhhhhcchHHH
Confidence 13467899999987
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=1e-05 Score=69.92 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=83.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhccccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
..+.+|+|+|+|.|-=++.+|-..+ .+++.+|.+..++.-+++-..++|++ +.+++..+.....
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~-------------- 134 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQ-------------- 134 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTT--------------
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccc--------------
Confidence 3567999999999999999998777 79999999999999999999999998 7888887765430
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
.....+.||+|++=|=.+ -..++.-+..++++||++++---.
T Consensus 135 -~~~~~~~~D~v~sRAva~--------------------------l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 135 -RKDVRESYDIVTARAVAR--------------------------LSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp -CTTTTTCEEEEEEECCSC--------------------------HHHHHHHHGGGEEEEEEEEEEECC
T ss_pred -cccccccceEEEEhhhhC--------------------------HHHHHHHHhhhcccCCEEEEECCC
Confidence 001135899998533211 234788899999999988876444
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.26 E-value=6e-08 Score=84.92 Aligned_cols=85 Identities=25% Similarity=0.328 Sum_probs=69.7
Q ss_pred HHhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 123 LAAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 123 l~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
-++..+++.+++.||++|+|+|..|..+++.. .+|+|+|+|+.+++.+++++... -.++++++|+.+++
T Consensus 20 kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~-~n~~ii~~D~l~~~--------- 88 (245)
T d1yuba_ 20 QIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN-TRVTLIHQDILQFQ--------- 88 (245)
T ss_dssp HHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC-SEEEECCSCCTTTT---------
T ss_pred HHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc-cchhhhhhhhhccc---------
Confidence 34566788899999999999999999999875 59999999999998887665432 13899999999876
Q ss_pred ccccccccccCCCCCCEEEEccCCc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+....++.|+.+-|+.
T Consensus 89 ---------~~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 89 ---------FPNKQRYKIVGNIPYH 104 (245)
T ss_dssp ---------CCCSSEEEEEEECCSS
T ss_pred ---------cccceeeeEeeeeehh
Confidence 2446678899999976
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.25 E-value=2.7e-06 Score=75.90 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHc-----CCceEEEecCccccchhhhhhhhccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRL-----NLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~-----g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
-.+||=+|.|.|+.+-.+++..+ .+|+.+|+++..++.+++-+... .-+++++.+|+..+-
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l------------- 147 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL------------- 147 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH-------------
T ss_pred CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHH-------------
Confidence 35999999999999999987656 69999999999999999876432 123899999998764
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHH
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQ 286 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~v 286 (329)
.....++||+|++|++-. .|. +.. . ...++++.+.+.|+|||.++.-+-|.. .+.+.
T Consensus 148 ---~~~~~~~yDvIi~D~~dp-~~~----~~~--L-----------~t~eF~~~~~~~L~~~Gi~v~q~~s~~--~~~~~ 204 (290)
T d1xj5a_ 148 ---KNAAEGSYDAVIVDSSDP-IGP----AKE--L-----------FEKPFFQSVARALRPGGVVCTQAESLW--LHMDI 204 (290)
T ss_dssp ---HTSCTTCEEEEEECCCCT-TSG----GGG--G-----------GSHHHHHHHHHHEEEEEEEEEECCCTT--TCHHH
T ss_pred ---hhccccCccEEEEcCCCC-CCc----chh--h-----------CCHHHHHHHHHhcCCCcEEEEecCCcH--HHHHH
Confidence 112346899999998843 121 110 1 135678888999999999998754432 34444
Q ss_pred HHHHH
Q psy15212 287 AIIFS 291 (329)
Q Consensus 287 v~~~l 291 (329)
+..++
T Consensus 205 ~~~i~ 209 (290)
T d1xj5a_ 205 IEDIV 209 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.21 E-value=9.4e-07 Score=77.09 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=70.3
Q ss_pred HHHHhhhcCCCCC--CeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCC----------ceEEEecC
Q psy15212 121 AQLAAPLLDIRSG--MYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNL----------KATLILSD 188 (329)
Q Consensus 121 s~l~~~~l~~~~g--~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~----------~v~~~~~D 188 (329)
.+..+.++..+++ .+|||+.||.|.-+..+|.+ +++|+++|.++.....++++++++.. +++++++|
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 4556666666555 48999999999999999986 46999999999999999999887631 26899999
Q ss_pred ccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 189 ISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+.++- .. ....||+|.+||++.
T Consensus 154 s~~~L----------------~~-~~~~~DvIYlDPMFp 175 (250)
T d2oyra1 154 SLTAL----------------TD-ITPRPQVVYLDPMFP 175 (250)
T ss_dssp HHHHS----------------TT-CSSCCSEEEECCCCC
T ss_pred HHHHH----------------hc-cCCCCCEEEECCCCc
Confidence 87653 11 235799999999975
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=98.15 E-value=1.4e-06 Score=75.36 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=61.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc-eEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
++++.+|+|+||||||.+..++++.+ ..|.|.++--...+ .-...+.++.. +.....+.
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~ni~~~~~~~d------------------ 124 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGWNLVRLQSGVD------------------ 124 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTGGGEEEECSCC------------------
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccccccccchhhhh------------------
Confidence 57788999999999999999998765 56777776211000 00000111111 12211111
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
+....++..|.|+||.-=| +|. ..+++.. -.++|+-|.++|+|||.+|.
T Consensus 125 -v~~l~~~~~D~vlcDm~es-s~~-------------~~vd~~R--tl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 125 -VFFIPPERCDTLLCDIGES-SPN-------------PTVEAGR--TLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp -TTTSCCCCCSEEEECCCCC-CSS-------------HHHHHHH--HHHHHHHHHHHCCTTCEEEE
T ss_pred -HHhcCCCcCCEEEeeCCCC-CCC-------------chhhhhh--HHHHHHHHHHHcccCCEEEE
Confidence 0123467899999996322 222 1111111 12578888999999998774
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=4e-06 Score=73.29 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=67.9
Q ss_pred HhhhcCCCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 124 AAPLLDIRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
.+..+++.+++.||++|+|+|..|..|++.. .+|+|+|+|+..++.+++..... -+++++++|+.+++...+.
T Consensus 13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~-~~~~ii~~D~l~~~~~~~~----- 85 (252)
T d1qyra_ 13 IVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAMTFNFGELA----- 85 (252)
T ss_dssp HHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGGGCCHHHHH-----
T ss_pred HHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc-cchhHHhhhhhhhcccccc-----
Confidence 3556678899999999999999999999865 59999999999999988744322 1389999999987632211
Q ss_pred cccccccccCCCCCCEEEEccCCccc
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
. .. ..--.|+-+.|++-+
T Consensus 86 ------~-~~-~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 86 ------E-KM-GQPLRVFGNLPYNIS 103 (252)
T ss_dssp ------H-HH-TSCEEEEEECCTTTH
T ss_pred ------c-cc-CCCeEEEecchHHHH
Confidence 0 01 123378899998744
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.80 E-value=6.2e-05 Score=65.13 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=69.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC-c-eEEEecCccccchhhhhhhhcccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL-K-ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~-~-v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
....+|||+|+|+|..+.++++..+ .+++..|+. .. ++..+. . ++++.+|+.+..
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v-------i~~~~~~~ri~~~~gd~~~~~-------------- 137 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QV-------IENAPPLSGIEHVGGDMFASV-------------- 137 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HH-------HTTCCCCTTEEEEECCTTTCC--------------
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hh-------hhccCCCCCeEEecCCccccc--------------
Confidence 4457899999999999999999988 799999973 22 233333 2 888999986532
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
+ ..|.|++- .+ ...|+.++ -.++|+++.+.|+|||+|+....
T Consensus 138 -----p--~~D~~~l~------~v-------Lh~~~de~-------~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 138 -----P--QGDAMILK------AV-------CHNWSDEK-------CIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp -----C--CEEEEEEE------SS-------GGGSCHHH-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----c--cceEEEEe------hh-------hhhCCHHH-------HHHHHHHHHHHcCCCcEEEEEEE
Confidence 2 35888751 11 12334444 24689999999999999988754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.73 E-value=3.9e-05 Score=63.95 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCeEEeecCCCchHHHHH----HHhCC-----CEEEEEeCChhHHHHHHH
Q psy15212 133 GMYVLDACSAPGGKTCHL----LEIAD-----IKLISVDNNLSRLNMISE 173 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~l----a~~~~-----~~v~avD~~~~rl~~l~~ 173 (329)
.-+||++|||+|-=...+ .+... .+|+|.|+|+..++.+++
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~ 74 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 74 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence 348999999999854333 33222 389999999999998875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.62 E-value=0.00032 Score=56.49 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=69.0
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
..++++|++||-.|+|+ |..+.++|+..+.+|+++|.++.+++.+++ +|....+.. |..........
T Consensus 21 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~----~ga~~~~~~-~~~~~~~~~~~------- 88 (170)
T d1e3ja2 21 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGADVTLVV-DPAKEEESSII------- 88 (170)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCSEEEEC-CTTTSCHHHHH-------
T ss_pred HhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH----cCCcEEEec-cccccccchhh-------
Confidence 34689999999998884 455666777777899999999999887665 465533322 21111100000
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
..+....+..+|.|+- |+|. ...+..+++++++||++++..+.
T Consensus 89 -~~~~~~~g~g~D~vid---~~g~-------------------------~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 89 -ERIRSAIGDLPNVTID---CSGN-------------------------EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp -HHHHHHSSSCCSEEEE---CSCC-------------------------HHHHHHHHHHSCTTCEEEECSCC
T ss_pred -hhhhcccccCCceeee---cCCC-------------------------hHHHHHHHHHHhcCCceEEEecC
Confidence 0000012467998863 3322 13577888999999999976543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=8.7e-05 Score=60.84 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=67.6
Q ss_pred hcCCCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 127 LLDIRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..++++|++||-.|||+ |..++++|+..+ .+|+++|.++.+++.++ ++|... ++...-.... ...-..
T Consensus 23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~-vi~~~~~~~~--~~~~~i--- 92 (182)
T d1vj0a2 23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGADL-TLNRRETSVE--ERRKAI--- 92 (182)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCSE-EEETTTSCHH--HHHHHH---
T ss_pred HhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccc----cccceE-EEeccccchH--HHHHHH---
Confidence 34678999999999875 667778888888 48999999999998765 457642 2221111110 000000
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
........+|.|+- |+|.. ..++.+.+.+++||++++.-
T Consensus 93 ----~~~~~~~g~Dvvid---~vG~~-------------------------~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 93 ----MDITHGRGADFILE---ATGDS-------------------------RALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp ----HHHTTTSCEEEEEE---CSSCT-------------------------THHHHHHHHEEEEEEEEECC
T ss_pred ----HHhhCCCCceEEee---cCCch-------------------------hHHHHHHHHhcCCCEEEEEe
Confidence 01112456999883 33321 14677889999999998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.58 E-value=6e-05 Score=61.68 Aligned_cols=105 Identities=20% Similarity=0.247 Sum_probs=69.7
Q ss_pred hhhcCCCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 125 APLLDIRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 125 ~~~l~~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
+...++++|+.||=+|||+ |..++++|+..+ .+|+++|.+++|++.++ ++|... ++...-..+. ..+.
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~----~lGa~~-~i~~~~~~~~-~~v~---- 89 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK----FYGATD-ILNYKNGHIE-DQVM---- 89 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH----HHTCSE-EECGGGSCHH-HHHH----
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH----hhCccc-cccccchhHH-HHHH----
Confidence 4455789999999999988 778888888887 48999999999988775 466542 2221111111 0000
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
.......||+||- |+|. ...++.++++++|||+++..
T Consensus 90 -------~~t~g~G~D~vid---~~g~-------------------------~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 90 -------KLTNGKGVDRVIM---AGGG-------------------------SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp -------HHTTTSCEEEEEE---CSSC-------------------------TTHHHHHHHHEEEEEEEEEC
T ss_pred -------HHhhccCcceEEE---ccCC-------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 1112356999874 2221 12478888999999999874
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.55 E-value=4.7e-05 Score=65.41 Aligned_cols=143 Identities=15% Similarity=0.245 Sum_probs=87.2
Q ss_pred cceEEEechhHHHHhhh-c-CCCCCCeEEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCceE
Q psy15212 111 NGFCSIQDAAAQLAAPL-L-DIRSGMYVLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLKAT 183 (329)
Q Consensus 111 ~G~~~~Qd~~s~l~~~~-l-~~~~g~~VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~v~ 183 (329)
.|.-.+|.+.-+.+-+. + ..+| ..||++|++.|+-++.+++.+ + ++|+++|+++.+........ -.++
T Consensus 58 ~G~p~~k~p~d~~~~~eli~~~KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~----~~I~ 132 (232)
T d2bm8a1 58 RGLRMLKDPDTQAVYHDMLWELRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDM----ENIT 132 (232)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHCC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGC----TTEE
T ss_pred cceecccCHHHHHHHHHHHHHhCC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccc----ccee
Confidence 47777888776555442 2 2344 499999999999888777643 2 79999999886654322111 1288
Q ss_pred EEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHh
Q psy15212 184 LILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWK 263 (329)
Q Consensus 184 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~ 263 (329)
++.+|..+...- .......+|.|+.|.--+ .+. +..-+. ..+
T Consensus 133 ~i~gDs~~~~~~--------------~~l~~~~~dlIfID~~H~----------------~~~-------v~~~~~-~~~ 174 (232)
T d2bm8a1 133 LHQGDCSDLTTF--------------EHLREMAHPLIFIDNAHA----------------NTF-------NIMKWA-VDH 174 (232)
T ss_dssp EEECCSSCSGGG--------------GGGSSSCSSEEEEESSCS----------------SHH-------HHHHHH-HHH
T ss_pred eeecccccHHHH--------------HHHHhcCCCEEEEcCCcc----------------hHH-------HHHHHH-Hhc
Confidence 999998764310 112345789999996422 111 111122 357
Q ss_pred cCCCCCEEEEE-cCCCCccccHHHHHHHHhhCCC
Q psy15212 264 MLKPGGKLLFV-TCSLWFEESEEQAIIFSKNHKD 296 (329)
Q Consensus 264 ~LkpgG~lvys-TCS~~~~Ene~vv~~~l~~~~~ 296 (329)
+|++||++++- |++.....+++-.........+
T Consensus 175 lLk~GG~iIveD~i~~~~~~~~~~~~e~~~~~~~ 208 (232)
T d2bm8a1 175 LLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRD 208 (232)
T ss_dssp TCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTT
T ss_pred ccCcCCEEEEEcCCccccccCchHHHHHHhhhcc
Confidence 89999998874 3333334445545445555443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.55 E-value=4.1e-05 Score=66.35 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=60.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-----------------------------------------CEEEEEeCChhHHHH
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-----------------------------------------IKLISVDNNLSRLNM 170 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-----------------------------------------~~v~avD~~~~rl~~ 170 (329)
.+..++|.|||+|.+.+.+|.... ..+++.|+++..++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 344799999999999887765320 246788888888887
Q ss_pred H---HHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCc
Q psy15212 171 I---SENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 171 l---~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCs 227 (329)
+ ++|+++.|+. +++...|+.+... +. ........++||+||||-
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~--~~-----------~~~~~~~~GlIVtNPPYG 178 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRA--LS-----------AVLAGSAPDVVLTDLPYG 178 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGG--HH-----------HHHTTCCCSEEEEECCGG
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCc--ch-----------hccCCCCCCEEEeCCCcc
Confidence 7 5799999996 7899999876430 00 011235678999999986
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.54 E-value=0.00026 Score=58.81 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=71.4
Q ss_pred HhhhcCCCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 124 AAPLLDIRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 124 ~~~~l~~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
++...++++|++||.+|||+ |..+.++|+..+ .+|+++|.++.|++.++ ++|... ++...-.++. ..+.
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~----~~Ga~~-~~~~~~~~~~-~~i~--- 87 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQGFEI-ADLSLDTPLH-EQIA--- 87 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCEE-EETTSSSCHH-HHHH---
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh----hccccE-EEeCCCcCHH-HHHH---
Confidence 34456799999999999999 546777787777 69999999999998765 456542 2211111111 0000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCc-ccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIP-WLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~-~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
....+..+|.++- |+|.-.. ..+... .... ..+.++.+++.++|||++++.-
T Consensus 88 --------~~t~g~g~D~vid---~vG~~~~-~~~~~~~~~~~----------~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 88 --------ALLGEPEVDCAVD---AVGFEAR-GHGHEGAKHEA----------PATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp --------HHHSSSCEEEEEE---CCCTTCB-CSSTTGGGSBC----------TTHHHHHHHHHEEEEEEEEECS
T ss_pred --------HHhCCCCcEEEEE---Ccccccc-CCcccceeecC----------cHHHHHHHHHHHhcCCEEEEee
Confidence 0113456899873 3321000 000000 0000 1236889999999999998753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=9.6e-05 Score=59.85 Aligned_cols=50 Identities=6% Similarity=-0.054 Sum_probs=39.9
Q ss_pred cCCCCCCeEEeecCC-CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 128 LDIRSGMYVLDACSA-PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 128 l~~~~g~~VLDlcag-~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
.++++|++||-+|+| .|..+.++|+.++.+|+++|.++++++.++ ++|..
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~----~lGa~ 73 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM----KMGAD 73 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH----HHTCS
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh----ccCCc
Confidence 468999999999987 455666677777789999999999998755 46765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.44 E-value=0.00047 Score=59.36 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=66.6
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|||+|+|+|..+..+++..+ .+++..|+. +. ++..+.. ++++.+|+.+..
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~v-------i~~~~~~~rv~~~~gD~f~~~---------------- 136 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QV-------VENLSGSNNLTYVGGDMFTSI---------------- 136 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HH-------HTTCCCBTTEEEEECCTTTCC----------------
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HH-------HHhCcccCceEEEecCcccCC----------------
Confidence 36899999999999999999988 799999973 22 3344443 889999987532
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC---CEEEEE
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG---GKLLFV 274 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg---G~lvys 274 (329)
..+|++++- . +...|+.++ -.++|+++.+.|+|| |+++..
T Consensus 137 -----p~aD~~~l~------~-------vLHdw~d~~-------~~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 137 -----PNADAVLLK------Y-------ILHNWTDKD-------CLRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp -----CCCSEEEEE------S-------CGGGSCHHH-------HHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred -----CCCcEEEEE------e-------ecccCChHH-------HHHHHHHHHHHcCcccCCcEEEEE
Confidence 357998851 1 122334443 356899999999998 666654
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.36 E-value=0.0024 Score=55.98 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=79.8
Q ss_pred CeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFY 212 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 212 (329)
.+|||++||.||.+.-+-+. | -.+.|+|+++..++..+.|. ...++.+|..++...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-----~~~~~~~Di~~~~~~----------------- 57 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----SAKLIKGDISKISSD----------------- 57 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-----CSEEEESCTTTSCGG-----------------
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----CCCCccCChhhCCHh-----------------
Confidence 37999999999998877653 5 46679999999999888874 346678898886511
Q ss_pred CCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc-CCCCccccHHHHHHHH
Q psy15212 213 KNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-CSLWFEESEEQAIIFS 291 (329)
Q Consensus 213 ~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT-CS~~~~Ene~vv~~~l 291 (329)
.-...|+++.-|||.+.-..++.... ..++ ..+ ..++++ +.+.++|.- ++.-. -.+....+...+..++
T Consensus 58 ~~~~~dll~~g~PCq~fS~ag~~~g~----~d~r-~~l---~~~~~~-~i~~~~Pk~-~~lENV~~~~~~~~~~~~~~~l 127 (324)
T d1dcta_ 58 EFPKCDGIIGGPPCQSWSEGGSLRGI----DDPR-GKL---FYEYIR-ILKQKKPIF-FLAENVKGMMAQRHNKAVQEFI 127 (324)
T ss_dssp GSCCCSEEEECCCCTTTSSSSCCCCS----SSHH-HHH---HHHHHH-HHHHHCCSE-EEEEEEGGGGSGGGHHHHHHHH
T ss_pred HcccccEEeecccccccccccccccc----cccc-cch---HHHHHH-HHHhhCCce-eeccccccccccccchhhHHHH
Confidence 12469999999999888766543221 1111 122 222222 334467854 44333 2233334555666665
Q ss_pred hh
Q psy15212 292 KN 293 (329)
Q Consensus 292 ~~ 293 (329)
+.
T Consensus 128 ~~ 129 (324)
T d1dcta_ 128 QE 129 (324)
T ss_dssp HH
T ss_pred hH
Confidence 53
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.0011 Score=53.41 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=68.0
Q ss_pred hhcCCCCCCeEEeecCCCchH-HHHHHHhCCC-EEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc--hhhhhhhh
Q psy15212 126 PLLDIRSGMYVLDACSAPGGK-TCHLLEIADI-KLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN--LKKLYIDI 201 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~k-t~~la~~~~~-~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~--~~~~~~~~ 201 (329)
...++++|+.||=+|||+.|. +.+++..+++ +|+++|.++.+++.++ ++|....+...+ .... ...+
T Consensus 20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~----~~Ga~~~~~~~~-~~~~~~~~~~---- 90 (171)
T d1pl8a2 20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGADLVLQISK-ESPQEIARKV---- 90 (171)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCSEEEECSS-CCHHHHHHHH----
T ss_pred HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH----HhCCcccccccc-cccccccccc----
Confidence 334689999999999987654 4555666674 8999999999998764 457653222211 1111 0000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
....+..+|.|+- |+|. ...++.+.+++++||++++.-.
T Consensus 91 --------~~~~g~g~Dvvid---~~G~-------------------------~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 91 --------EGQLGCKPEVTIE---CTGA-------------------------EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp --------HHHHTSCCSEEEE---CSCC-------------------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred --------cccCCCCceEEEe---ccCC-------------------------chhHHHHHHHhcCCCEEEEEec
Confidence 0012357999874 3432 1357889999999999988643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.33 E-value=0.00043 Score=56.37 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=69.3
Q ss_pred hhcCCCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...++++|+.||=+|||+ |..++++++.++ ..|++.|.+++|++.++ ++|.... +...-.+.......
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~----~~Ga~~~-i~~~~~~~~~~~~~----- 91 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGATDC-LNPRELDKPVQDVI----- 91 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCSEE-ECGGGCSSCHHHHH-----
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH----HhCCCcc-cCCccchhhhhhhH-----
Confidence 345689999999999998 777888888888 59999999999986544 5676522 21110000000000
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCC-CEEEEE
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPG-GKLLFV 274 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~Lkpg-G~lvys 274 (329)
.......+|.|+- |+|. ...+..+++.+++| |+++..
T Consensus 92 ------~~~~~~G~d~vie---~~G~-------------------------~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 92 ------TELTAGGVDYSLD---CAGT-------------------------AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp ------HHHHTSCBSEEEE---SSCC-------------------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred ------hhhhcCCCcEEEE---eccc-------------------------chHHHHHHHHhhcCCeEEEec
Confidence 0112467999973 5543 13588899999996 998874
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.27 E-value=0.0012 Score=56.50 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=65.0
Q ss_pred CCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
..+|||+|+|+|..+..+++..+ .+++..|+... + +.... .++.+.+|+....
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~---------------- 137 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSI---------------- 137 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCC----------------
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccccccC----------------
Confidence 46899999999999999999988 79999998553 2 22222 2788888876532
Q ss_pred cccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCC
Q psy15212 210 RFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCS 277 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS 277 (329)
+ ..|.+++ + . +...+..++ -..+|+++.+.|+|||+++....-
T Consensus 138 ---P--~ad~~~l----~--~-------vlh~~~d~~-------~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 138 ---P--KADAVFM----K--W-------ICHDWSDEH-------CLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp ---C--CCSCEEC----S--S-------SSTTSCHHH-------HHHHHHHHHHHCCSSSCEEEEECE
T ss_pred ---C--CcceEEE----E--E-------EeecCCHHH-------HHHHHHHHHHhcCCCceEEEEEEE
Confidence 1 2344442 0 1 112233333 345899999999999988877543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=97.16 E-value=0.00051 Score=60.96 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+.+|||++||.||.+..+-+ .| -.|.|+|+++..++..+.|... ..++|..++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~-aG~~~v~a~e~d~~a~~~~~~N~~~------~~~~Di~~~~~---------------- 66 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGE------KPEGDITQVNE---------------- 66 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSC------CCBSCGGGSCG----------------
T ss_pred CCCeEEEECccccHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHCCC------CCcCchhcCch----------------
Confidence 478999999999999988754 55 4678899999999999998732 23577776541
Q ss_pred ccCCCCCCEEEEccCCcccccccc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRR 234 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~ 234 (329)
. .-..+|+|+.-|||.+....++
T Consensus 67 ~-~~~~~Dll~ggpPCq~fS~ag~ 89 (327)
T d2c7pa1 67 K-TIPDHDILCAGFPCQAFSISGK 89 (327)
T ss_dssp G-GSCCCSEEEEECCCTTTCTTSC
T ss_pred h-hcceeeeeecccccchhhhhhh
Confidence 1 1246999999999987766654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.13 E-value=0.00021 Score=58.06 Aligned_cols=103 Identities=20% Similarity=0.164 Sum_probs=66.2
Q ss_pred hhcCCCCCCeEEeecCCCch-HHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDACSAPGG-KTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~-kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
..++++||++||=+|||+-| .+.++|+..+ ..|++.|.++.+++.+++ +|.. +++..+-.+.. ..+
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~-~~i~~~~~~~~-~~i------ 89 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT-HVINSKTQDPV-AAI------ 89 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS-EEEETTTSCHH-HHH------
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe-EEEeCCCcCHH-HHH------
Confidence 34579999999999887654 3455555555 588999999999887664 5654 23332222211 000
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....++.||.|+- |+|. ...++.+.++++++|++++.
T Consensus 90 ------~~~t~gg~D~vid---~~G~-------------------------~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 90 ------KEITDGGVNFALE---STGS-------------------------PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp ------HHHTTSCEEEEEE---CSCC-------------------------HHHHHHHHHTEEEEEEEEEC
T ss_pred ------HHHcCCCCcEEEE---cCCc-------------------------HHHHHHHHhcccCceEEEEE
Confidence 0113457999874 3332 13577889999999999874
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0016 Score=52.15 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=65.1
Q ss_pred hhcCCCCCCeEEeecCCC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 126 PLLDIRSGMYVLDACSAP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
...++++|++||=.|||+ |..++++|+.++.+++++|.++++++.++ ++|.... +. ..+...
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~----~lGad~~-i~--~~~~~~---------- 86 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK----ALGADEV-VN--SRNADE---------- 86 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HHTCSEE-EE--TTCHHH----------
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh----ccCCcEE-EE--CchhhH----------
Confidence 345789999999998765 45666777777788889999999887554 5676522 22 111110
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.....+.+|.|+- |+|... .+..+++++++||+++...
T Consensus 87 -----~~~~~~~~D~vid---~~g~~~-------------------------~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 87 -----MAAHLKSFDFILN---TVAAPH-------------------------NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp -----HHTTTTCEEEEEE---CCSSCC-------------------------CHHHHHTTEEEEEEEEECC
T ss_pred -----HHHhcCCCceeee---eeecch-------------------------hHHHHHHHHhcCCEEEEec
Confidence 0012357999885 333211 2667788999999998653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0016 Score=52.47 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=65.5
Q ss_pred hcCCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccc
Q psy15212 127 LLDIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKK 204 (329)
Q Consensus 127 ~l~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~ 204 (329)
..++++|++||-.|| +.|..++++|+.++.+|++++.++++.+.++ ++|..- ++...-.++. ..+.
T Consensus 23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~----~~Ga~~-vi~~~~~~~~-~~i~------ 90 (174)
T d1yb5a2 23 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL----QNGAHE-VFNHREVNYI-DKIK------ 90 (174)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCSE-EEETTSTTHH-HHHH------
T ss_pred HhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccc----ccCccc-ccccccccHH-HHhh------
Confidence 346889999999986 4566777888888889999998988877654 467652 2221111111 0000
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+..||+|+. |+| ...+..+++.|+|||++|..
T Consensus 91 -----~~t~~~g~d~v~d---~~g--------------------------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 91 -----KYVGEKGIDIIIE---MLA--------------------------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp -----HHHCTTCEEEEEE---SCH--------------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred -----hhhccCCceEEee---ccc--------------------------HHHHHHHHhccCCCCEEEEE
Confidence 0113467998873 221 12467788899999998863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.85 E-value=0.00094 Score=53.94 Aligned_cols=94 Identities=15% Similarity=0.277 Sum_probs=63.4
Q ss_pred cCCCCCCeEEeecC-CC-chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccc
Q psy15212 128 LDIRSGMYVLDACS-AP-GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKT 205 (329)
Q Consensus 128 l~~~~g~~VLDlca-g~-G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~ 205 (329)
.+++||++||=.|+ |+ |..++++|+..+.+|++++.++++++.++ ++|.+..+ |..+... .
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~----~lGa~~~i---~~~~~~~-~--------- 85 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL----ALGAEEAA---TYAEVPE-R--------- 85 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH----HTTCSEEE---EGGGHHH-H---------
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc----ccccceee---ehhhhhh-h---------
Confidence 46899999998875 33 56777788888899999999999887655 46765322 2222110 0
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
......+|.|+ | |+|. .+..+++.|++||+++.
T Consensus 86 -----~~~~~g~D~v~-d--~~G~---------------------------~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 86 -----AKAWGGLDLVL-E--VRGK---------------------------EVEESLGLLAHGGRLVY 118 (171)
T ss_dssp -----HHHTTSEEEEE-E--CSCT---------------------------THHHHHTTEEEEEEEEE
T ss_pred -----hhccccccccc-c--ccch---------------------------hHHHHHHHHhcCCcEEE
Confidence 01235699875 5 5641 14667889999998875
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.84 E-value=0.00065 Score=54.37 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=39.5
Q ss_pred hhcCCCCCCeEEeecCCCch-HHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 126 PLLDIRSGMYVLDACSAPGG-KTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~-kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++++|++||=.|+|+=| .+.++++..+.+|+++|.++.+++.++ ++|..
T Consensus 21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~----~~Ga~ 73 (166)
T d1llua2 21 KQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR----KLGAS 73 (166)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HTTCS
T ss_pred HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh----ccCcc
Confidence 34578999999999887633 445566667789999999999997654 56765
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00091 Score=59.37 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=52.8
Q ss_pred CeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 134 MYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 134 ~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
.+|+|+|||.||.++.+-.. | -.|.|+|+++..++..+.|.. ...++..|..++....
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~~~-------------- 63 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEE-------------- 63 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHH--------------
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCHhH--------------
Confidence 47999999999998776543 4 247899999999998888742 1456677877654211
Q ss_pred ccCCCCCCEEEEccCCccccccccC
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRN 235 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~ 235 (329)
+....+|+++.-|||.+..+.++.
T Consensus 64 -~~~~~~Dll~ggpPCq~fS~ag~~ 87 (343)
T d1g55a_ 64 -FDRLSFDMILMSPPCQPFTRIGRQ 87 (343)
T ss_dssp -HHHHCCSEEEECCC----------
T ss_pred -cCCCCccEEEeecccccccccccc
Confidence 112369999999999888776543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.72 E-value=0.0011 Score=56.40 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHH
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKR 177 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~ 177 (329)
-.+|+.|||.+||+|..+.++. .++-+-+|+|++++-++.+++++++
T Consensus 210 s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~~ 256 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLNQ 256 (256)
T ss_dssp CCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred CCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHcC
Confidence 3689999999999997765554 4667999999999999999999863
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.0022 Score=57.24 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=50.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.++.|||+|.|+|..|.++++..+ .+|+++|+++..++.+++... +-+++++++|+..+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l~~~ 103 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPYDWS 103 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTTCHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchhhcc
Confidence 467899999999999999998754 599999999999999988764 224789999988754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.57 E-value=0.00093 Score=53.87 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCCCCCeEEeecCCCchHH-HHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACSAPGGKT-CHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlcag~G~kt-~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
.++||+.||=.|+|+.|.. .+++...+ ..|+++|.++++++.+++ +|.. +++..+-.... ...
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~-~~i~~~~~~~~--~~~-------- 93 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD-HVVDARRDPVK--QVM-------- 93 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS-EEEETTSCHHH--HHH--------
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc-eeecCcccHHH--HHH--------
Confidence 3688999999999876655 45666666 699999999999887663 5554 23322211111 000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
.......+|.|+- |+|. ...++.+++.+++||+++..-
T Consensus 94 ---~~~~~~g~d~vid---~~g~-------------------------~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 94 ---ELTRGRGVNVAMD---FVGS-------------------------QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp ---HHTTTCCEEEEEE---SSCC-------------------------HHHHHHGGGGEEEEEEEEECC
T ss_pred ---HhhCCCCceEEEE---ecCc-------------------------chHHHHHHHHHhCCCEEEEEe
Confidence 1113456998874 3322 124788899999999999753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.55 E-value=0.0018 Score=55.69 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=41.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHc
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRL 178 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~ 178 (329)
-.+|+.|||.+||+|..+.++.. ++-+.+++|+++.-++.+++++++.
T Consensus 205 s~~gdiVLDpF~GSGTT~~Aa~~-lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTARVAIQ-EGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHH-HTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred cCCCCEEEecCCCCcHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 36899999999999977665555 4569999999999999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.40 E-value=0.0044 Score=50.02 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=40.2
Q ss_pred hhcCCCCCCeEEeecCCCchHH-HHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 126 PLLDIRSGMYVLDACSAPGGKT-CHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~kt-~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...++++|++||=.|||+.|.. +++++.++ .+|+++|.+++|++.++ ++|..
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~----~lGa~ 74 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT 74 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH----HcCCc
Confidence 3456899999999999876654 44566666 69999999999998765 46765
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.32 E-value=0.0053 Score=48.62 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=38.6
Q ss_pred hcCCCCCCeEEeecCCCchHH-HHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKT-CHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt-~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++||++||=.|+|+-|.. .++++..+.+|+++|.++++++.++ ++|..
T Consensus 22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k----~~Ga~ 73 (168)
T d1rjwa2 22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK----ELGAD 73 (168)
T ss_dssp HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTCS
T ss_pred HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh----hcCcc
Confidence 446899999999988876544 4445556689999999999988654 46765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.26 E-value=0.0016 Score=56.97 Aligned_cols=49 Identities=12% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcC
Q psy15212 130 IRSGMYVLDACSAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLN 179 (329)
Q Consensus 130 ~~~g~~VLDlcag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g 179 (329)
-.+|+.|||.+||+|..+.++. .++-+.+|+|++++.++.+++++....
T Consensus 248 s~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~~~~ 296 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLDNN 296 (320)
T ss_dssp CCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred ccCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHHhcc
Confidence 4589999999999997665554 466799999999999999998876643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.12 E-value=0.0054 Score=48.85 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=65.3
Q ss_pred hhcCCCCCCeEEeecC-CCc-hHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhc
Q psy15212 126 PLLDIRSGMYVLDACS-APG-GKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDIN 202 (329)
Q Consensus 126 ~~l~~~~g~~VLDlca-g~G-~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~ 202 (329)
...++++|++||=.|+ |+. ..+.+++...+ .+|+++|.++.+++.+++ +|... ++..+..++. ..+.
T Consensus 21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~~-~i~~~~~~~~-~~~~---- 90 (170)
T d1jvba2 21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADY-VINASMQDPL-AEIR---- 90 (170)
T ss_dssp HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSE-EEETTTSCHH-HHHH----
T ss_pred HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCce-eeccCCcCHH-HHHH----
Confidence 3456899999999996 443 34555666666 699999999999887764 56552 2222222221 0000
Q ss_pred ccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+..||.|+- |+|. ...++.+++.++|||+++..
T Consensus 91 -------~~~~~~~~d~vid---~~g~-------------------------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 91 -------RITESKGVDAVID---LNNS-------------------------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp -------HHTTTSCEEEEEE---SCCC-------------------------HHHHTTGGGGEEEEEEEEEC
T ss_pred -------HHhhcccchhhhc---cccc-------------------------chHHHhhhhhcccCCEEEEe
Confidence 1112456998874 4432 13467788999999998753
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.08 E-value=0.023 Score=45.24 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=37.0
Q ss_pred hcCCCCCCeEEeecCCCch-HHHHHHHhCC-CEEEEEeCChhHHHHHHHH
Q psy15212 127 LLDIRSGMYVLDACSAPGG-KTCHLLEIAD-IKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~-kt~~la~~~~-~~v~avD~~~~rl~~l~~n 174 (329)
..++++|++||=.|||.++ ...+++...+ .+|+++|.++++++.+++.
T Consensus 23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 3469999999999987655 4455556666 6999999999998876443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.76 E-value=0.023 Score=45.66 Aligned_cols=102 Identities=16% Similarity=0.308 Sum_probs=65.6
Q ss_pred hhcCCCCCCeEEeecCCC--chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDACSAP--GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~--G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...++++|++||=.+++. |..+.++|+..+.+|+++..++++++.++ .+|....+...|..... ..+
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~~~-~~~------ 91 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK----QIGFDAAFNYKTVNSLE-EAL------ 91 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTTCSEEEETTSCSCHH-HHH------
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH----hhhhhhhcccccccHHH-HHH------
Confidence 455789999999776654 55677788888899999999988876544 45665333322221111 000
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
.......+|+|+ | |.| .+.++.+++.|++||+++.
T Consensus 92 ------~~~~~~Gvd~v~-D--~vG--------------------------~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 92 ------KKASPDGYDCYF-D--NVG--------------------------GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp ------HHHCTTCEEEEE-E--SSC--------------------------HHHHHHHGGGEEEEEEEEE
T ss_pred ------HHhhcCCCceeE-E--ecC--------------------------chhhhhhhhhccCCCeEEe
Confidence 011345799987 3 222 1247788999999998875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.60 E-value=0.016 Score=46.44 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=63.4
Q ss_pred hhcCCCCCCeEEeec--CCCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcc
Q psy15212 126 PLLDIRSGMYVLDAC--SAPGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINK 203 (329)
Q Consensus 126 ~~l~~~~g~~VLDlc--ag~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~ 203 (329)
...++++|++||=.| .|.|..++++|...+.+++++..++++.+.++ +.|... ++...-.++. ..+.
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~----~~Ga~~-vi~~~~~~~~-~~v~----- 87 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RLGVEY-VGDSRSVDFA-DEIL----- 87 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TTCCSE-EEETTCSTHH-HHHH-----
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc----cccccc-cccCCccCHH-HHHH-----
Confidence 344689999999765 34556677777777789999988888776554 567662 2222211211 0000
Q ss_pred cccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy15212 204 KTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLF 273 (329)
Q Consensus 204 ~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvy 273 (329)
....+..||+|+. |.| .+.++.+++.|+++|++|.
T Consensus 88 ------~~t~~~g~d~v~d---~~g--------------------------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 88 ------ELTDGYGVDVVLN---SLA--------------------------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp ------HHTTTCCEEEEEE---CCC--------------------------THHHHHHHHTEEEEEEEEE
T ss_pred ------HHhCCCCEEEEEe---ccc--------------------------chHHHHHHHHhcCCCEEEE
Confidence 1113467999984 221 0246777889999999885
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.01 Score=47.50 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=40.8
Q ss_pred hcCCCCCCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..+++||++||=.|+| -|..+.++|+..+++|++++.++++.+.++ ++|..
T Consensus 23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~----~lGa~ 75 (179)
T d1qora2 23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL----KAGAW 75 (179)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----HHTCS
T ss_pred HhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH----hcCCe
Confidence 4468899999888555 466788888888899999999999988765 46765
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.44 E-value=0.0065 Score=48.49 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=38.7
Q ss_pred hhcCCCCCCeEEeecCCC-chHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 126 PLLDIRSGMYVLDACSAP-GGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~-G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
...+++||++||=.|||. |..++++++.++ ..|+++|.++++++.++ ++|..
T Consensus 22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak----~lGa~ 75 (176)
T d2fzwa2 22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK----EFGAT 75 (176)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HHTCS
T ss_pred HhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH----HhCCc
Confidence 345789999999887764 345556666666 69999999999987654 56765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.17 E-value=0.011 Score=51.28 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=48.0
Q ss_pred eEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHH
Q psy15212 182 ATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNL 261 (329)
Q Consensus 182 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a 261 (329)
..++++|..+.- ..++++++|+|+.|||+... . . +...............+.+..+
T Consensus 13 ~~l~~GD~le~l----------------~~l~~~sVdli~tDPPY~~~-~---~----~~~~~~~~~~y~~~~~~~l~~~ 68 (320)
T d1booa_ 13 GSMYIGDSLELL----------------ESFPEESISLVMTSPPFALQ-R---K----KEYGNLEQHEYVDWFLSFAKVV 68 (320)
T ss_dssp EEEEESCHHHHG----------------GGSCSSCEEEEEECCCCSSS-C---S----CSSCSCHHHHHHHHHHHHHHHH
T ss_pred CEEEehhHHHHH----------------hhCccCCCCEEEECCCCcCC-C---C----CCCCCCCHHHHHHHHHHHHHHH
Confidence 478899987643 22467899999999998521 1 1 1111223445566677899999
Q ss_pred HhcCCCCCEEEEE
Q psy15212 262 WKMLKPGGKLLFV 274 (329)
Q Consensus 262 ~~~LkpgG~lvys 274 (329)
.++|+++|.++..
T Consensus 69 ~rvLk~~G~i~i~ 81 (320)
T d1booa_ 69 NKKLKPDGSFVVD 81 (320)
T ss_dssp HHHEEEEEEEEEE
T ss_pred HHhCcccCccccc
Confidence 9999999988764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.16 E-value=0.063 Score=45.61 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=76.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++. |++..+|+.+ |.+|+.+|.+++.++.+.+.++..|.++..+.+|.++... ..+. + ..-.
T Consensus 4 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~---~-~~~~ 78 (260)
T d1zema1 4 NGKVCLVTGAGG-NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTV---D-SVVR 78 (260)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHH---H-HHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH---H-HHHH
Confidence 477788777664 5666666543 3799999999999999999999888888889999987541 0000 0 0000
Q ss_pred cccccCCCCCCEEEEccCCccc-cccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC--CCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGS-GVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML--KPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~-G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L--kpgG~lvysT 275 (329)
.-+..|.++.++-..+. +.+...+...|... +.....-...+.+.+.+.+ +.+|.+|+.+
T Consensus 79 -----~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~---~~vnl~~~~~~~~~~~~~m~~~~~G~II~is 141 (260)
T d1zema1 79 -----DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARV---LTINVTGAFHVLKAVSRQMITQNYGRIVNTA 141 (260)
T ss_dssp -----HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred -----HhCCCCeehhhhccccccCccccccHHHHHhh---ccccccccccchhhHHhhhhhhcCCCCCeee
Confidence 11579999988764432 33322222222211 1111111223344444433 4678888764
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.01 E-value=0.012 Score=47.55 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
..++|++||=-|+ |.|..++++|+..+++|++.-.+++..+.++ .+|....+-..+...-.
T Consensus 28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~----~lGa~~vi~~~~~~~~~------------- 90 (176)
T d1xa0a2 28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR----VLGAKEVLAREDVMAER------------- 90 (176)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH----HTTCSEEEECC-------------------
T ss_pred CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH----hcccceeeecchhHHHH-------------
Confidence 3567889998775 4456778888888899999999999887665 56776322111110000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWF 280 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~ 280 (329)
.....++.+|+|+ |.- |- ..+..+.+.|++||+++....+-.+
T Consensus 91 --~~~~~~~gvD~vi-d~v--gg--------------------------~~~~~~l~~l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 91 --IRPLDKQRWAAAV-DPV--GG--------------------------RTLATVLSRMRYGGAVAVSGLTGGA 133 (176)
T ss_dssp -----CCSCCEEEEE-ECS--TT--------------------------TTHHHHHHTEEEEEEEEECSCCSSS
T ss_pred --HHHhhccCcCEEE-EcC--Cc--------------------------hhHHHHHHHhCCCceEEEeecccCc
Confidence 0112356899776 432 10 1377888999999999976554333
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.11 Score=44.08 Aligned_cols=89 Identities=9% Similarity=0.122 Sum_probs=59.7
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc--eEEEecCccccchhhhhhhhcccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK--ATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~--v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
|..||=.|++ +|.+..+|+.+ |.+|+.+|.++.+++.+.+.++..+.+ +..+.+|.++.. .+.--.+. .-
T Consensus 10 ~Kv~lITGas-~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~--~v~~~v~~-~~- 84 (257)
T d1xg5a_ 10 DRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEE--DILSMFSA-IR- 84 (257)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHH--HHHHHHHH-HH-
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHH--HHHHHHHH-HH-
Confidence 5677777766 56777777654 379999999999999999999988764 677899998754 11000000 00
Q ss_pred cccccCCCCCCEEEEccCCcccc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSG 230 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G 230 (329)
. .-+..|.++.++.....+
T Consensus 85 --~--~~g~iD~lVnnAg~~~~~ 103 (257)
T d1xg5a_ 85 --S--QHSGVDICINNAGLARPD 103 (257)
T ss_dssp --H--HHCCCSEEEECCCCCCCC
T ss_pred --H--hcCCCCEEEecccccCCC
Confidence 0 125799999877654333
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.85 E-value=0.066 Score=45.29 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRF 209 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 209 (329)
|..+|=.|++ +|.+..+|+.+. .+|+.+|.+++.++.+.+.++..|.++..+..|.++... +.--.+ ....
T Consensus 10 nKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~--v~~~~~-~~~~-- 83 (251)
T d2c07a1 10 NKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEE--ISEVIN-KILT-- 83 (251)
T ss_dssp SCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHH--HHHHHH-HHHH--
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHH--HHHHHH-HHHH--
Confidence 5566766655 568887777543 699999999999999999999888888889999987541 100000 0000
Q ss_pred cccCCCCCCEEEEccCCccccc
Q psy15212 210 RFYKNKYFDRILADLPCTGSGV 231 (329)
Q Consensus 210 ~~~~~~~fD~Vl~D~PCsg~G~ 231 (329)
..+..|.++.++.....+.
T Consensus 84 ---~~g~iDilvnnag~~~~~~ 102 (251)
T d2c07a1 84 ---EHKNVDILVNNAGITRDNL 102 (251)
T ss_dssp ---HCSCCCEEEECCCCCCCCC
T ss_pred ---hcCCceeeeeccccccccc
Confidence 1257999988876544333
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.66 E-value=0.012 Score=50.19 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=43.0
Q ss_pred cCCCCCCEEEEccCCc-cccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc-----CCCCccccHH
Q psy15212 212 YKNKYFDRILADLPCT-GSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT-----CSLWFEESEE 285 (329)
Q Consensus 212 ~~~~~fD~Vl~D~PCs-g~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT-----CS~~~~Ene~ 285 (329)
++++++|+|+.|||+. +.+- |... ..+.......+..+.++|||||.++... +.....+.-.
T Consensus 19 l~d~SIDliitDPPYn~~~~~--------~~~~----~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~ 86 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLAD--------WDDH----MDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLIS 86 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGG--------GGTC----SSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHHH
T ss_pred CcCCCccEEEECCCCCCCccc--------ccCH----HHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchhh
Confidence 4678999999999985 2221 1111 1233445678999999999999877542 1122333444
Q ss_pred HHHHHHhhC
Q psy15212 286 QAIIFSKNH 294 (329)
Q Consensus 286 vv~~~l~~~ 294 (329)
.+..++...
T Consensus 87 ~~~~~~~~~ 95 (279)
T d1eg2a_ 87 IISHMRQNS 95 (279)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcc
Confidence 555555543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.52 E-value=0.0094 Score=50.14 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=45.3
Q ss_pred EEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHH
Q psy15212 183 TLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLW 262 (329)
Q Consensus 183 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~ 262 (329)
+++++|..+.- ..++++++|+|+.|||+.. |. . .|. .......+.....+.+..+.
T Consensus 6 ~i~~gDcle~l----------------~~lpd~sVdliitdPPY~~-~~--~----~~d-~~~~~~~y~~~~~~~~~e~~ 61 (256)
T d1g60a_ 6 KIHQMNCFDFL----------------DQVENKSVQLAVIDPPYNL-SK--A----DWD-SFDSHNEFLAFTYRWIDKVL 61 (256)
T ss_dssp SEEECCHHHHH----------------HHSCTTCEEEEEECCCCSS-CS--S----GGG-CCSSHHHHHHHHHHHHHHHH
T ss_pred EEEeccHHHHH----------------hhCcCCCcCEEEECCCCCC-Cc--C----cCc-CCCCHHHHHHHHHHHHHHhh
Confidence 57888887642 2245788999999999842 11 0 111 11224455666778999999
Q ss_pred hcCCCCCEEEE
Q psy15212 263 KMLKPGGKLLF 273 (329)
Q Consensus 263 ~~LkpgG~lvy 273 (329)
+.|+|||.++.
T Consensus 62 rvLk~~g~~~~ 72 (256)
T d1g60a_ 62 DKLDKDGSLYI 72 (256)
T ss_dssp HHEEEEEEEEE
T ss_pred hccccCccccc
Confidence 99999998764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.40 E-value=0.034 Score=44.09 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=39.1
Q ss_pred hcCCCCCCeEEeecCCCchHH-HHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 127 LLDIRSGMYVLDACSAPGGKT-CHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~G~kt-~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
..++++|++|+=.|+|+++.. .+++...+ ..|+++|.+++|++.++ ++|..
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd 75 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT 75 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCc
Confidence 446899999999999995544 44555555 69999999999987654 57765
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.076 Score=45.28 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=77.9
Q ss_pred CCeEEeecCCCchHHHHHHHh----CCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEI----ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~----~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
|.+|-=+--|++|++..+|+. .+.+|+.++.+.++++.+.+.++..+.++.++..|..+... +.--.+. .-
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~s--v~~~~~~-~~-- 76 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQS--IRALRDF-LR-- 76 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHH--HHHHHHH-HH--
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHH--HHHHHHH-HH--
Confidence 567743434455666666543 34699999999999999999999888888899999987641 1000000 00
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ..+..|.++.++= +....+... .+.++.... ..-...+.+.++.+++++|++|..+
T Consensus 77 -~--~~g~iDiLVnNAG-----i~~~~~~~~--~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 77 -K--EYGGLDVLVNNAG-----IAFKVADPT--PFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp -H--HHSSEEEEEECCC-----CCCCTTCCS--CHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred -H--hcCCcEEEEEcCC-----cCCCCCccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 0 1157999998873 322222111 112222211 1223456778888999999988764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.39 E-value=0.039 Score=44.55 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=41.7
Q ss_pred hcCCCCCCeEEeecCCC---chHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCce
Q psy15212 127 LLDIRSGMYVLDACSAP---GGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKA 182 (329)
Q Consensus 127 ~l~~~~g~~VLDlcag~---G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v 182 (329)
...++||+.||=..+|+ |..++++|+.++.+|+++=.+....+...+.++.+|...
T Consensus 23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~ 81 (189)
T d1gu7a2 23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQ 81 (189)
T ss_dssp SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSE
T ss_pred HhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccE
Confidence 34688998877764443 456677888888899888777777777788888889863
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.36 E-value=0.12 Score=43.86 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=75.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|.++|=.|++ +|++..+|+.+ |.+|+.+|.+++.++.+.+.+...+.++..+.+|.++... ..+.-. ...
T Consensus 7 kgK~alVTGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~----~~~ 81 (259)
T d1xq1a_ 7 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQT----VSS 81 (259)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH----HHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHH----HHH
Confidence 36677777765 55666666543 4799999999999999999998888788889999886531 000000 000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCC--CCCEEEEEcC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLK--PGGKLLFVTC 276 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lk--pgG~lvysTC 276 (329)
. ..+..|.++.++.....+.+.. .+.++.... ..-...+.+.+.+.++ .+|++|..+.
T Consensus 82 ~----~~g~idilvnnAG~~~~~~~~~-------~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS 145 (259)
T d1xq1a_ 82 M----FGGKLDILINNLGAIRSKPTLD-------YTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSS 145 (259)
T ss_dssp H----HTTCCSEEEEECCC------CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-
T ss_pred H----hCCCcccccccccccCCCchhh-------CCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccc
Confidence 0 1257899998876544333322 223332222 1122334555555553 4688887643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.35 E-value=0.18 Score=42.55 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ +|++..+|+.+ +.+|+.+|.++++++.+.+.+...|..+..+.+|.++..
T Consensus 7 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~ 70 (259)
T d2ae2a_ 7 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 70 (259)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHH
Confidence 47788877766 56776666553 369999999999999999999988877888889988754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.92 E-value=0.052 Score=43.42 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=38.1
Q ss_pred hhcCCCCCCeEEeecCCCchH-HHHHHHhCC-CEEEEEeCChhHHHHHHHH
Q psy15212 126 PLLDIRSGMYVLDACSAPGGK-TCHLLEIAD-IKLISVDNNLSRLNMISEN 174 (329)
Q Consensus 126 ~~l~~~~g~~VLDlcag~G~k-t~~la~~~~-~~v~avD~~~~rl~~l~~n 174 (329)
...++++|+.|+=.|||+.|. +.++++..+ .+|+++|.++++++.+++.
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 344689999999999987654 455566666 6999999999999876543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.65 E-value=0.3 Score=41.29 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=78.5
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC-hhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN-LSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~-~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
|.++|=.|++ +|++..+|+.+ |.+|+.+|.+ .+.++.+.+.+++.+.++..+.+|..+... +.--.+ ....
T Consensus 18 gK~~lITGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~--v~~~~~-~~~~- 92 (272)
T d1g0oa_ 18 GKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVED--IVRMFE-EAVK- 92 (272)
T ss_dssp TCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH--HHHHHH-HHHH-
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHH--HHHHHH-HHHH-
Confidence 6677777765 45666665543 3699999886 677888888899998888888999887541 100000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
..+..|.++.++.....+.+.......|. ..+.....-...+.+.+...++.+|..+..+
T Consensus 93 ----~~g~idilV~nag~~~~~~~~~~~~~~~~---~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 93 ----IFGKLDIVCSNSGVVSFGHVKDVTPEEFD---RVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp ----HHSCCCEEEECCCCCCCCCGGGCCHHHHH---HHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred ----HhCCCCccccccccchhhhhhhhhhhHHH---HHhhhccceeeeecccccccccccccccccc
Confidence 11578999887765544433322222221 1122222334556777888888887666554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.31 Score=40.88 Aligned_cols=128 Identities=8% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHH-HHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENL-KRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~-~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++. |++..+|+.+ |.+|+.+|.+.+.++.+.+.+ ++.|.++..+.+|+++... +.--.+ ...+
T Consensus 4 ~gK~~lITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~--v~~~~~-~~~~ 79 (251)
T d1vl8a_ 4 RGRVALVTGGSR-GLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEE--VKKLLE-AVKE 79 (251)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHH--HHHHHH-HHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHH--HHHHHH-HHHH
Confidence 367788787664 5666666543 479999999999988777665 5667778888999987541 000000 0001
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCC--CCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKP--GGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lkp--gG~lvysT 275 (329)
+ -+..|.++.++--+..+.+ +..+.++..... .-...+.+.+++.++. +|.+|..+
T Consensus 80 ~-----~g~iDiLVnnAG~~~~~~~-------~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 80 K-----FGKLDTVVNAAGINRRHPA-------EEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp H-----HSCCCEEEECCCCCCCCCG-------GGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred H-----cCCCCEEEECCCCCCCCCh-------hhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 1 1579999876632222221 122333333222 2233455666666643 56776654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.57 E-value=0.036 Score=44.16 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=62.0
Q ss_pred CCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccc
Q psy15212 130 IRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 130 ~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
..+|+.||=-|| |-|..++++|+.++++|++...++++.+.+ +++|....+...|...-.
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~----~~lGad~vi~~~~~~~~~-------------- 82 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL----KQLGASEVISREDVYDGT-------------- 82 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH----HHHTCSEEEEHHHHCSSC--------------
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH----HhhcccceEeccchhchh--------------
Confidence 345667886543 345566777877889999999999887765 445766322222111100
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCC
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSL 278 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~ 278 (329)
......+.+|.|+ |.-- -..+..+++.|++||++|..-++-
T Consensus 83 -~~~~~~~gvd~vi-d~vg----------------------------g~~~~~~~~~l~~~G~iv~~G~~~ 123 (167)
T d1tt7a2 83 -LKALSKQQWQGAV-DPVG----------------------------GKQLASLLSKIQYGGSVAVSGLTG 123 (167)
T ss_dssp -CCSSCCCCEEEEE-ESCC----------------------------THHHHHHHTTEEEEEEEEECCCSS
T ss_pred -hhcccCCCceEEE-ecCc----------------------------HHHHHHHHHHhccCceEEEeeccC
Confidence 0011345788876 3321 125788899999999998765553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.51 E-value=0.085 Score=42.36 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=61.5
Q ss_pred hcCCCCC--CeEEeec--CCCchHHHHHHHhCC-CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhh
Q psy15212 127 LLDIRSG--MYVLDAC--SAPGGKTCHLLEIAD-IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDI 201 (329)
Q Consensus 127 ~l~~~~g--~~VLDlc--ag~G~kt~~la~~~~-~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~ 201 (329)
..++++| +.||=.| .|.|..++++|+.++ ..|+++..++++...+ .+..|... ++...-..+. ..+
T Consensus 23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l---~~~~gad~-vi~~~~~~~~-~~~---- 93 (187)
T d1vj1a2 23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL---TSELGFDA-AVNYKTGNVA-EQL---- 93 (187)
T ss_dssp HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH---HHHSCCSE-EEETTSSCHH-HHH----
T ss_pred HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh---hhcccceE-EeeccchhHH-HHH----
Confidence 3456776 7788755 577889999999888 4788877776665543 23346542 2222111111 000
Q ss_pred cccccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 202 NKKTNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 202 ~~~~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
....+..+|+|+ |+- | .+.+..+++.|++||+++..
T Consensus 94 --------~~~~~~GvDvv~-D~v--G--------------------------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 94 --------REACPGGVDVYF-DNV--G--------------------------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp --------HHHCTTCEEEEE-ESS--C--------------------------HHHHHHHHTTEEEEEEEEEC
T ss_pred --------HHHhccCceEEE-ecC--C--------------------------chhHHHHhhhccccccEEEe
Confidence 011235699997 432 1 12477889999999999863
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.97 E-value=0.32 Score=40.93 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ +|.+..+|+.+ |.+|+.++.++.+++.+.+.+...+..+..+..|+.+..
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~ 68 (258)
T d1ae1a_ 5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 68 (258)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHH
Confidence 47778877776 55666666443 379999999999999999999998888888899998754
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.90 E-value=0.22 Score=41.98 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ +|.+..+|+.+ |.+|+.+|.+++.++.+.+.++..|.++..+.+|.++..
T Consensus 10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~ 73 (255)
T d1fmca_ 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHH
Confidence 47677766654 56777777654 379999999999999999999998888888899998754
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.89 E-value=0.094 Score=47.58 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=45.5
Q ss_pred cCCCCCCeEEeecCCCchHHHHHHHhCC---CEEEEEeCChhHHHHHHHHHHHcCC
Q psy15212 128 LDIRSGMYVLDACSAPGGKTCHLLEIAD---IKLISVDNNLSRLNMISENLKRLNL 180 (329)
Q Consensus 128 l~~~~g~~VLDlcag~G~kt~~la~~~~---~~v~avD~~~~rl~~l~~n~~~~g~ 180 (329)
+.+.+++.++|+||--|..+..++...+ .+|+|+|.++.-.+.+++|++.++.
T Consensus 208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 3467889999999999999888776544 5999999999999999999998764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.3 Score=40.78 Aligned_cols=128 Identities=14% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++ +|.+..+|+.+ |.+|+.+|.+++.++.+.+.+ +-++..+..|.++... ..+. + ..-
T Consensus 3 ~gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~-~---~~~- 73 (243)
T d1q7ba_ 3 EGKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYL---GANGKGLMLNVTDPASIESVL-E---KIR- 73 (243)
T ss_dssp TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHH-H---HHH-
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---CCCCcEEEEEecCHHHhhhhh-h---hhh-
Confidence 36677777766 55677666554 369999999999888777655 3346777889887531 0000 0 000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcC--CCCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKML--KPGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~L--kpgG~lvysT 275 (329)
. .-+..|.++.++-....+.+...+...|.. .+.-...-...+.+.+++.+ +.+|++|+.+
T Consensus 74 --~--~~g~iDilVnnAg~~~~~~~~~~~~~~~~~---~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is 136 (243)
T d1q7ba_ 74 --A--EFGEVDILVNNAGITRDNLLMRMKDEEWND---IIETNLSSVFRLSKAVMRAMMKKRHGRIITIG 136 (243)
T ss_dssp --H--HTCSCSEEEECCCCCCCCCGGGCCHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred --c--ccCCcceehhhhhhcccccccccccccccc---ccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence 0 125799998877544333332222222211 11111112233455555555 3478888764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=92.01 E-value=0.36 Score=40.42 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=43.4
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ +|++..+|+.+ |.+|+.+|.+++.++.+.+.+.. +-++.++.+|.++..
T Consensus 5 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~ 67 (251)
T d1zk4a1 5 DGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDED 67 (251)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHH
Confidence 36677766654 55766666543 47999999999999888877643 335788899998754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.32 Score=40.65 Aligned_cols=61 Identities=23% Similarity=0.115 Sum_probs=48.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.||+.| .+..+|..+ |.+|+.+|.++++++.+.+.++..|.++..+.+|.++..
T Consensus 6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~ 69 (244)
T d1yb1a_ 6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE 69 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence 3777777777665 555555433 479999999999999999999988888888999998864
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.70 E-value=1.3 Score=37.28 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~ 193 (329)
.|.++|=.|++. |++..+|+.+ |.+|+.+|.+++.++.+.+.+...+.. +..+.+|.++..
T Consensus 3 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~ 69 (274)
T d1xhla_ 3 SGKSVIITGSSN-GIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEAS 69 (274)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHH
Confidence 366777777665 5666666543 369999999999999999999988763 688999988754
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.68 E-value=0.41 Score=40.12 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=76.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHhC---CCEEEE-EeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 131 RSGMYVLDACSAPGGKTCHLLEIA---DIKLIS-VDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 131 ~~g~~VLDlcag~G~kt~~la~~~---~~~v~a-vD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
-.|..||=.| |+||.+.++|+.+ |.+|+. .+.+...++.+.+.++..|.++..+.+|+++...-+-.+.. ..
T Consensus 4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~---~~ 79 (259)
T d1ja9a_ 4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDK---AV 79 (259)
T ss_dssp TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH---HH
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHH---HH
Confidence 3588888666 5677888777654 356765 56788889999999999998888999999875410000000 00
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFV 274 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvys 274 (329)
. ..+..|.++.++--...+.+.....-.|. ..+.....-...+++.+...++.+|.++..
T Consensus 80 ~-----~~g~idilinnag~~~~~~~~~~~~~~~~---~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 80 S-----HFGGLDFVMSNSGMEVWCDELEVTQELFD---KVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp H-----HHSCEEEEECCCCCCCCCCGGGCCHHHHH---HHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred H-----HcCCCcEEEeccccccccccccchHHHHH---HHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 0 12568988877653333322222111121 111122222345667777777776655443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=91.50 E-value=0.45 Score=39.89 Aligned_cols=127 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC-hhHHHHHHHHHH-HcCCceEEEecCccccch-hhhhhhhcccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN-LSRLNMISENLK-RLNLKATLILSDISKINL-KKLYIDINKKT 205 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~-~~rl~~l~~n~~-~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~ 205 (329)
.|..+|=.|++ +|.+..+|+.+ |.+|+.+|.+ ...++.+.+.+. ..|.++..+.+|.++... ..+. + ..
T Consensus 3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~-~---~~ 77 (260)
T d1x1ta1 3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLV-D---NA 77 (260)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHH-H---HH
T ss_pred CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH-H---HH
Confidence 46677755555 56677766543 3699999996 577887777664 457778889999987541 0000 0 00
Q ss_pred cccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCCC--CCEEEEEc
Q psy15212 206 NNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLKP--GGKLLFVT 275 (329)
Q Consensus 206 ~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lkp--gG~lvysT 275 (329)
.. .-+..|.++.++--...+.+... +.++..... .-...+.+.+++.++. +|++|..+
T Consensus 78 ~~-----~~G~iDiLVnnAG~~~~~~~~~~-------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~is 141 (260)
T d1x1ta1 78 VR-----QMGRIDILVNNAGIQHTALIEDF-------PTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIA 141 (260)
T ss_dssp HH-----HHSCCSEEEECCCCCCCCCGGGC-------CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HH-----HhCCCcEEEeecccccCCchhhh-------hHHhhhhhhhccccccccccchhhhhHhhcCCceEeecc
Confidence 01 11579999988754433333222 223322221 2223445555555543 57777653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.41 E-value=0.59 Score=39.04 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=47.3
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
|..+|=.|++ +|.+..+|+.+ |.+|+.+|.+++.++.+.+.++..|.++..+.+|.++..
T Consensus 2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~ 64 (257)
T d2rhca1 2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 64 (257)
T ss_dssp CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHH
Confidence 4445666654 56777777654 379999999999999999999998888889999998754
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.35 E-value=0.53 Score=39.32 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=45.5
Q ss_pred EEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
+|=.|++ +|++..+|+.+ |.+|+.+|++++.++.+.+.++..|.++..+.+|.++..
T Consensus 4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~ 63 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRD 63 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHH
Confidence 3555654 66777777653 379999999999999999999998888888899998754
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.12 E-value=1.3 Score=37.03 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=44.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++. |++..+|+.+ |.+|+.+|+++.+++.+.+.+...+ .+.++.+|+++..
T Consensus 5 ~gKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~~~~ 67 (268)
T d2bgka1 5 QDKVAIITGGAG-GIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD-VISFVHCDVTKDE 67 (268)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT-TEEEEECCTTCHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC-ceEEEEccCCCHH
Confidence 477788888665 5777776553 3799999999999988887775433 2667888988754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.03 E-value=0.63 Score=38.86 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++ +|.+..+|+.+ |.+|+.+|++++.++.+.+.+ +-+...+..|..+... ..+. + ....
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~---~-~~~~ 76 (253)
T d1hxha_ 5 QGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVM---A-AVQR 76 (253)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHH---H-HHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CCCeEEEEeecCCHHHHHHHH---H-HHHH
Confidence 46677766655 55777766653 379999999998887766554 5556778889877531 0000 0 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHH----HHHHHHHHHHhcCC-CCCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSK----YSCKILNNLWKMLK-PGGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~----~q~~lL~~a~~~Lk-pgG~lvysT 275 (329)
.-+..|.++.++--...+.+ +..+.++..+... -...+.+.+.+.++ .||.+|..+
T Consensus 77 -----~~g~iDilVnnAG~~~~~~~-------~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 77 -----RLGTLNVLVNNAGILLPGDM-------ETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp -----HHCSCCEEEECCCCCCCBCT-------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred -----HhCCCCeEEecccccCCCCc-------ccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 11578999987742222211 2223333332221 12335556666665 578888764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.66 E-value=0.89 Score=38.12 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCC-hhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNN-LSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~-~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++. |++..+|+.+ +.+|+.++.+ +..++.+.+.++..|.++..+.+|.++..
T Consensus 6 ~gK~alITGas~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~ 70 (261)
T d1geea_ 6 EGKVVVITGSST-GLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVES 70 (261)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 366777666665 5677666553 3699999987 45788888999998888888899998754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.7 Score=38.79 Aligned_cols=89 Identities=10% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-CCceEEEecCccccchhhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-NLKATLILSDISKINLKKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-g~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 207 (329)
.|.++|=.||+.| .+..+|+.+ |.+|+.++.+.++++.+.+.+... +..+..+..|..........+.. ..
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~- 87 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQ---AG- 87 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHH---HH-
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHH---HH-
Confidence 4778888887765 666666543 479999999999999988776554 44477777777654310000000 00
Q ss_pred cccccCCCCCCEEEEccCCccc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGS 229 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~ 229 (329)
...+..|.++.++-....
T Consensus 88 ----~~~g~~~~li~nag~~~~ 105 (269)
T d1xu9a_ 88 ----KLMGGLDMLILNHITNTS 105 (269)
T ss_dssp ----HHHTSCSEEEECCCCCCC
T ss_pred ----HHhCCccccccccccccc
Confidence 012568888887754433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=1.2 Score=38.04 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=57.0
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc-----CCceEEEecCccccch-hhhhhhhc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL-----NLKATLILSDISKINL-KKLYIDIN 202 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~-----g~~v~~~~~D~~~~~~-~~~~~~~~ 202 (329)
.|..+|=.|++ +|++..+|+.+ |.+|+.+|.+.++++.+.+.+... +.++..+.+|+++... ..+ ++
T Consensus 11 ~gKvalITGas-~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~-~~-- 86 (297)
T d1yxma1 11 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL-VK-- 86 (297)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH-HH--
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH-HH--
Confidence 47777766655 56777777654 379999999999999888877643 3457788999987541 000 00
Q ss_pred ccccccccccCCCCCCEEEEccCCcccc
Q psy15212 203 KKTNNRFRFYKNKYFDRILADLPCTGSG 230 (329)
Q Consensus 203 ~~~~~~~~~~~~~~fD~Vl~D~PCsg~G 230 (329)
..-. ..+..|.++.++.-...+
T Consensus 87 -~~~~-----~~G~iDiLVnnAg~~~~~ 108 (297)
T d1yxma1 87 -STLD-----TFGKINFLVNNGGGQFLS 108 (297)
T ss_dssp -HHHH-----HHSCCCEEEECCCCCCCC
T ss_pred -HHHH-----HhCCeEEEEeeccccccC
Confidence 0000 115789998877544333
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=89.28 E-value=0.4 Score=41.93 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=60.9
Q ss_pred eEEeecCCCchHHHHHHHhC---CCEEEEEeCCh-----hHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccc
Q psy15212 135 YVLDACSAPGGKTCHLLEIA---DIKLISVDNNL-----SRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTN 206 (329)
Q Consensus 135 ~VLDlcag~G~kt~~la~~~---~~~v~avD~~~-----~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~ 206 (329)
+||=.| |+|-.+.++++.+ +-+|+++|... .+++.+........-.++++.+|.++.. .+.
T Consensus 3 ~vLITG-atGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~--~~~-------- 71 (357)
T d1db3a_ 3 VALITG-VTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTS--NLT-------- 71 (357)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHH--HHH--------
T ss_pred EEEEeC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHH--HHH--------
Confidence 444454 4598998887654 36999999843 3444444333333334788899987654 110
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhH-HHHHHHHHHHHHHHHHhc-CCCCCEEEE-EcCCCC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND-IKKLSKYSCKILNNLWKM-LKPGGKLLF-VTCSLW 279 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~-~~~l~~~q~~lL~~a~~~-LkpgG~lvy-sTCS~~ 279 (329)
..+....+|.|+-=+-+++.+.-.. .+.. .......-..+|+.|.+. ++...++|| |||++.
T Consensus 72 ---~~~~~~~~d~v~h~aa~~~~~~~~~--------~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vY 136 (357)
T d1db3a_ 72 ---RILREVQPDEVYNLGAMSHVAVSFE--------SPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELY 136 (357)
T ss_dssp ---HHHHHHCCSEEEECCCCCTTTTTTS--------CHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGG
T ss_pred ---HHHhccCCCEEEEeecccccchhhh--------CHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhh
Confidence 0112346899986554443322111 1222 222333445677777654 344456776 777643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.24 E-value=0.87 Score=37.82 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=54.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++. |.+..+|+.+ +.+|+.+|+++++++.+.+.+ +-++..+.+|.++... ..+. + ....
T Consensus 5 ~gK~alITGas~-GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~---~-~~~~ 76 (244)
T d1nffa_ 5 TGKVALVSGGAR-GMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADAARYVHLDVTQPAQWKAAV---D-TAVT 76 (244)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---GGGEEEEECCTTCHHHHHHHH---H-HHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---hCcceEEEeecCCHHHHHHHH---H-HHHH
Confidence 466778777665 5666666543 369999999998887766554 3346788899887541 0000 0 0000
Q ss_pred cccccCCCCCCEEEEccCCcccccc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVV 232 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~ 232 (329)
..+..|.++.++-....+.+
T Consensus 77 -----~~g~idilinnAG~~~~~~~ 96 (244)
T d1nffa_ 77 -----AFGGLHVLVNNAGILNIGTI 96 (244)
T ss_dssp -----HHSCCCEEEECCCCCCCBCT
T ss_pred -----HhCCCeEEEECCcccCCCch
Confidence 11578999988765544443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=89.16 E-value=1.8 Score=35.62 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=70.9
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|..+|=.|++ +|.+..+|+.+ +.+|+.++.+.+.++. ..+.++-++..+.+|+++.. .+.--.+ ....
T Consensus 4 ~gK~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~Dls~~~--~i~~~~~-~i~~- 75 (241)
T d2a4ka1 4 SGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAE---AVAALEAEAIAVVADVSDPK--AVEAVFA-EALE- 75 (241)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH---HHHTCCSSEEEEECCTTSHH--HHHHHHH-HHHH-
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHH---HHHHcCCceEEEEecCCCHH--HHHHHHH-HHHH-
Confidence 36677777666 56777777654 3699999999987654 44556666788889998754 1100000 0000
Q ss_pred ccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc-CCCCcc
Q psy15212 209 FRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT-CSLWFE 281 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT-CS~~~~ 281 (329)
.-++.|.++.++.-...+.+ +..+.++.... ..-...+.+.+...++.+|.+++++ ++..+.
T Consensus 76 ----~~g~iDiLinnAg~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~ 142 (241)
T d2a4ka1 76 ----EFGRLHGVAHFAGVAHSALS-------WNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA 142 (241)
T ss_dssp ----HHSCCCEEEEGGGGTTTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH
T ss_pred ----HhCCccEeccccccccccch-------hhhhccccccccccccccccccccccccccccccceeeccccccccc
Confidence 11578999887632222222 12222322221 2222345566666777776555544 444443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=89.14 E-value=0.65 Score=38.82 Aligned_cols=61 Identities=10% Similarity=0.142 Sum_probs=45.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHH-HHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENL-KRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~-~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ +|++..+|+.+ |.+|+.+|.+...++.+.+.+ +..|.++..+.+|.++..
T Consensus 8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~ 72 (260)
T d1h5qa_ 8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTD 72 (260)
T ss_dssp TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHH
Confidence 36677777755 56777776654 369999999998887776665 556777888999998754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.84 Score=37.66 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=72.3
Q ss_pred CCCeEEeecCCCc-hHHHHHHHh---CCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEI---ADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~---~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.+||=.|++.| |.+..+|+. .|.+|+.++.+++..+.+++.....+-. .....|...... ......
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------ 76 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSD-IVLQCDVAEDASIDTMFAE------ 76 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEECCTTCHHHHHHHHHH------
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCc-ceeecccchHHHHHHHHHH------
Confidence 4778888888774 555444443 2469999999988888888777766543 334445444220 000000
Q ss_pred ccccccCCCCCCEEEEccCCccccccccCCCCcccCChhH----HHHHHHHHHHHHHHHHhcCCCCCEEEEEcC
Q psy15212 207 NRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKND----IKKLSKYSCKILNNLWKMLKPGGKLLFVTC 276 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~----~~~l~~~q~~lL~~a~~~LkpgG~lvysTC 276 (329)
........|.++..+.-...+.+...+... ...+. ..........+.+.+...+++|+.+++.+.
T Consensus 77 ---~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss 145 (258)
T d1qsga_ 77 ---LGKVWPKFDGFVHSIGFAPGDQLDGDYVNA--VTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY 145 (258)
T ss_dssp ---HHTTCSSEEEEEECCCCCCGGGGSSCHHHH--CCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ---hhhcccccceEEEeeccccccccccccccc--chHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence 001235678877765433332222111111 11111 122233445667777888888888877654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.87 E-value=1.7 Score=36.23 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=44.2
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCC--ceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNL--KATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~--~v~~~~~D~~~~~ 193 (329)
|..+|=.|++. |++..+|+.+ |.+|+.+|.+++.++.+.+.+...+. ++..+.+|.++..
T Consensus 4 gK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~ 68 (258)
T d1iy8a_ 4 DRVVLITGGGS-GLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEA 68 (258)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHH
Confidence 66777777665 5665555543 37999999999999988888766543 4778889998754
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=88.83 E-value=1.1 Score=37.06 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=70.6
Q ss_pred EEeecCCCchHHHHHHHhC---CCEEEEEeC-ChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---DIKLISVDN-NLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNNRFR 210 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~~~v~avD~-~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~~~~ 210 (329)
||=.| |++|.+..+|+.+ |.+|+..|. ++..++.+.+.++..|.++..+..|.++... ..+. + ..- .
T Consensus 4 ~lITG-as~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~-~---~~~---~ 75 (244)
T d1edoa_ 4 VVVTG-ASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMM-K---TAI---D 75 (244)
T ss_dssp EEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHH-H---HHH---H
T ss_pred EEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-H---HHH---H
Confidence 44444 4566887777654 368877665 7788999999999888888888999987541 0000 0 000 0
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcC--CCCCEEEEEc
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKML--KPGGKLLFVT 275 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~L--kpgG~lvysT 275 (329)
.-+..|.++.++--...+.+. ..+.++.++.. .-...+.+.+++.+ +.+|++|..+
T Consensus 76 --~~g~iDiLVnnAg~~~~~~~~-------~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis 137 (244)
T d1edoa_ 76 --AWGTIDVVVNNAGITRDTLLI-------RMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIA 137 (244)
T ss_dssp --HSSCCSEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred --HcCCCCccccccccccccchh-------ccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 125799988776433332222 22233332221 12234455555554 3578888753
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=88.65 E-value=0.62 Score=38.58 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=71.5
Q ss_pred EEeecCCCchHHHHHHHhCC---C-------EEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccc
Q psy15212 136 VLDACSAPGGKTCHLLEIAD---I-------KLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKK 204 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~~---~-------~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~ 204 (329)
||=.|++. |.+..+|..+. . .|+.++.++..++.+.+.++..|.++..+.+|.++... .++.-.
T Consensus 4 vlITGas~-GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~---- 78 (240)
T d2bd0a1 4 LLITGAGK-GIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTH---- 78 (240)
T ss_dssp EEEETTTS-HHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHH----
T ss_pred EEEccCCC-HHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH----
Confidence 45556555 56666665432 2 48999999999999999999888888889999987541 000000
Q ss_pred ccccccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHH----HHHHHHHHHHHhcCC--CCCEEEEEc
Q psy15212 205 TNNRFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLS----KYSCKILNNLWKMLK--PGGKLLFVT 275 (329)
Q Consensus 205 ~~~~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~----~~q~~lL~~a~~~Lk--pgG~lvysT 275 (329)
.-. .-+..|.++.++-....+.+. ..+.++..... .-...+.+.+++.++ .+|+++..+
T Consensus 79 ~~~-----~~g~iDilvnnAg~~~~~~~~-------~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~is 143 (240)
T d2bd0a1 79 IVE-----RYGHIDCLVNNAGVGRFGALS-------DLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFIT 143 (240)
T ss_dssp HHH-----HTSCCSEEEECCCCCCCCCGG-------GCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHH-----HcCCcceeecccccccCCccc-------cCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEe
Confidence 000 125799998776433333222 22333333222 122334555555553 467777654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=1.2 Score=36.90 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.++|=.|++. |.+..+|+.+ |.+|+.+|.++..++.+.+.+. .+..+..|..+... +. .-
T Consensus 6 ~GK~~lITGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~--v~--------~~ 70 (244)
T d1pr9a_ 6 AGRRVLVTGAGK-GIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEA--TE--------RA 70 (244)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHH--HH--------HH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHH--HH--------HH
Confidence 477888888765 5666666553 3799999999998877665432 25677889877541 10 00
Q ss_pred ccccCCCCCCEEEEccC
Q psy15212 209 FRFYKNKYFDRILADLP 225 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~P 225 (329)
+. .-++.|.++.++.
T Consensus 71 ~~--~~g~iDilVnnAg 85 (244)
T d1pr9a_ 71 LG--SVGPVDLLVNNAA 85 (244)
T ss_dssp HT--TCCCCCEEEECCC
T ss_pred HH--HhCCceEEEeccc
Confidence 11 1257998887764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.85 E-value=4.1 Score=33.43 Aligned_cols=60 Identities=17% Similarity=0.106 Sum_probs=43.0
Q ss_pred CCeEEeecCCCchHHHHHHHhC------CCEEEEEeCChhHHHHHHHHHHHcC--CceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA------DIKLISVDNNLSRLNMISENLKRLN--LKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~------~~~v~avD~~~~rl~~l~~n~~~~g--~~v~~~~~D~~~~~ 193 (329)
|..+|=-|++. |++..+|+.+ |.+|+.++.++++++.+.+.+...+ .++..+.+|.++..
T Consensus 6 gKvalITGas~-GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~ 73 (259)
T d1oaaa_ 6 CAVCVLTGASR-GFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEA 73 (259)
T ss_dssp SEEEEESSCSS-HHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHH
Confidence 44455555554 5666666532 3699999999999999988887653 45788899998754
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.72 E-value=1 Score=37.22 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=71.6
Q ss_pred CCCeEEeecCCCc-hHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhccccc
Q psy15212 132 SGMYVLDACSAPG-GKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTN 206 (329)
Q Consensus 132 ~g~~VLDlcag~G-~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~ 206 (329)
.|.++|=.||+.+ |.+..+|+.+ |.+|+..+.++...+.+++.....+ ....+..|..+... ..+ ++ ...
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~-~~---~~~ 81 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG-GALLFRADVTQDEELDAL-FA---GVK 81 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT-CCEEEECCTTCHHHHHHH-HH---HHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC-cccccccccCCHHHHHHH-HH---HHH
Confidence 4788999998764 5566555443 4699999999887777766665544 45678889887541 000 00 000
Q ss_pred ccccccCCCCCCEEEEccCCcc-ccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCCCCEEEEEc
Q psy15212 207 NRFRFYKNKYFDRILADLPCTG-SGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKPGGKLLFVT 275 (329)
Q Consensus 207 ~~~~~~~~~~fD~Vl~D~PCsg-~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~LkpgG~lvysT 275 (329)
. ..+..|.++-++--.. ...... .+..+.++.... ..-...+.+.+...++.+|.+|..+
T Consensus 82 ~-----~~g~iDilVnnag~~~~~~~~~~----~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is 146 (256)
T d1ulua_ 82 E-----AFGGLDYLVHAIAFAPREAMEGR----YIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (256)
T ss_dssp H-----HHSSEEEEEECCCCCCHHHHSSC----GGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred H-----hcCCceEEEeccccccccccccc----hhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 0 1156887776553211 111100 011122222211 1223446667778888899887654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=86.66 E-value=0.97 Score=37.75 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=41.2
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++.| .+..+|+.+ |.+|+.+|+++++++.+.+ ..+-++..+.+|.++..
T Consensus 4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~~~~~~~~~~Dv~~~~ 64 (254)
T d1hdca_ 4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAR---ELGDAARYQHLDVTIEE 64 (254)
T ss_dssp CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TTGGGEEEEECCTTCHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhCCceEEEEcccCCHH
Confidence 4778888887755 666665543 3699999999987765544 44545788899988754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.38 E-value=2.1 Score=35.41 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ +|++..+|+.+ |.+|+.+|++.+.++.+.+ ++|.++..+.+|.++..
T Consensus 4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~---~~~~~~~~~~~Dvt~~~ 64 (256)
T d1k2wa_ 4 DGKTALITGSA-RGIGRAFAEAYVREGARVAIADINLEAARATAA---EIGPAACAIALDVTDQA 64 (256)
T ss_dssp TTEEEEEETCS-SHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH---HHCTTEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhCCceEEEEeeCCCHH
Confidence 36677777765 56777776654 3699999999887776654 44666788889998754
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=86.31 E-value=2.1 Score=35.30 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=41.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ +|.+..+|+.+ |.+|+.+|.++. +.++..++..|.++..+.+|.++..
T Consensus 4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g~~~~~~~~Dvs~~~ 65 (247)
T d2ew8a1 4 KDKLAVITGGA-NGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLGRRVLTVKCDVSQPG 65 (247)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 36677766655 56777776654 369999999775 3445567777877888999998754
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=85.81 E-value=2.1 Score=35.32 Aligned_cols=121 Identities=11% Similarity=0.110 Sum_probs=67.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccch-hhhhhhhcccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINL-KKLYIDINKKTNN 207 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~-~~~~~~~~~~~~~ 207 (329)
.|..+|=.|++ +|.+..+|+.+ +.+|+.+|.+++..+.++ ..+ ...+..|.++... .++. + ..-.
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~----~~~--~~~~~~Dv~~~~~v~~~~-~---~~~~ 72 (248)
T d2d1ya1 4 AGKGVLVTGGA-RGIGRAIAQAFAREGALVALCDLRPEGKEVAE----AIG--GAFFQVDLEDERERVRFV-E---EAAY 72 (248)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH----HHT--CEEEECCTTCHHHHHHHH-H---HHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HcC--CeEEEEeCCCHHHHHHHH-H---HHHH
Confidence 47778877755 56777776654 379999999988765433 223 4567789887541 0000 0 0000
Q ss_pred cccccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHH----HHHHHHHHHHHHhcCCC--CCEEEEEc
Q psy15212 208 RFRFYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKL----SKYSCKILNNLWKMLKP--GGKLLFVT 275 (329)
Q Consensus 208 ~~~~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l----~~~q~~lL~~a~~~Lkp--gG~lvysT 275 (329)
.-++.|.++.++-.+..+.+. ..+.++..+. ..-...+.+.+.+.++. +|++|..+
T Consensus 73 -----~~G~iDiLVnnAG~~~~~~~~-------~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 73 -----ALGRVDVLVNNAAIAAPGSAL-------TVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp -----HHSCCCEEEECCCCCCCBCTT-------TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred -----hcCCCCeEEEeCcCCCCCChh-------hCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 115789998877544333222 2233333322 12233456666666643 67887664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.48 E-value=2.5 Score=35.20 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=47.1
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCc---eEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLK---ATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~---v~~~~~D~~~~~ 193 (329)
.|.++|=.|++ +|++..+|+.+ |.+|+.+|.+++.++.+.+.+++.+.. +..+.+|.++..
T Consensus 4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~ 70 (272)
T d1xkqa_ 4 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTED 70 (272)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHH
T ss_pred CCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHH
Confidence 36667777655 56766666543 369999999999999999999988753 788899998754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=84.76 E-value=4.2 Score=33.89 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=45.0
Q ss_pred CCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHH-HcCCceEEEecCccccc
Q psy15212 133 GMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLK-RLNLKATLILSDISKIN 193 (329)
Q Consensus 133 g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~-~~g~~v~~~~~D~~~~~ 193 (329)
|.++|=.|++ ||++..+|+.+ |.+|+.+|.+..+++.+.+.+. ..|..+..+..|..+..
T Consensus 25 gK~alITGas-~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~ 88 (294)
T d1w6ua_ 25 GKVAFITGGG-TGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPD 88 (294)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHH
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChH
Confidence 6677777765 56777776553 4799999999999988777664 45666788889988754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.67 E-value=1.1 Score=35.34 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.6
Q ss_pred CCeEEeecCC--CchHHHHHHHhCCCEEEEEeCChhHHHHHHHHHHHcCCc
Q psy15212 133 GMYVLDACSA--PGGKTCHLLEIADIKLISVDNNLSRLNMISENLKRLNLK 181 (329)
Q Consensus 133 g~~VLDlcag--~G~kt~~la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~ 181 (329)
++.||=.+++ .|..++++|+.++.+|+++..+++..+.++ .+|..
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~----~lGad 78 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK----SLGAS 78 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH----HHTEE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH----hhccc
Confidence 4577755432 445677788888899999999999876654 45654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.66 E-value=1.9 Score=35.47 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=50.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|.++|=.|++ +|.+..+|+.+ |.+|+.+|.+++.++.+.+.+. .+..+..|..+... +. .-
T Consensus 4 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~--v~--------~~ 68 (242)
T d1cyda_ 4 SGLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDA--TE--------KA 68 (242)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHH--HH--------HH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHH--HH--------HH
Confidence 47788877765 45776666543 3799999999988776655432 35677889887541 10 00
Q ss_pred ccccCCCCCCEEEEccCCc
Q psy15212 209 FRFYKNKYFDRILADLPCT 227 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PCs 227 (329)
+. .-++.|.++.++-..
T Consensus 69 ~~--~~g~iDilVnnAg~~ 85 (242)
T d1cyda_ 69 LG--GIGPVDLLVNNAALV 85 (242)
T ss_dssp HT--TCCCCSEEEECCCCC
T ss_pred HH--HcCCCeEEEECCccc
Confidence 11 125799998877443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.42 E-value=3.7 Score=33.55 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=39.8
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~ 193 (329)
.|.++|=.|++. |.+..+|+.+ |.+|+.+|++++.++.+.+.+ .++.+.+|.++..
T Consensus 4 ~gK~~lITGas~-GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~ 62 (242)
T d1ulsa_ 4 KDKAVLITGAAH-GIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----GAHPVVMDVADPA 62 (242)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCeEEEEecCCHH
Confidence 366777777765 4777776654 369999999998887665432 3567788988754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.75 E-value=5.3 Score=30.17 Aligned_cols=103 Identities=14% Similarity=-0.012 Sum_probs=57.9
Q ss_pred EEeecCCCchHHHHHHHhC---C--CEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccccc
Q psy15212 136 VLDACSAPGGKTCHLLEIA---D--IKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFR 210 (329)
Q Consensus 136 VLDlcag~G~kt~~la~~~---~--~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 210 (329)
|+=+|+ |..+..+|..+ + .+|+++|.++..++.+++. +....... +....
T Consensus 4 I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~~~~~-~~~~~------------------ 58 (171)
T d2g5ca2 4 VLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIIDEGTT-SIAKV------------------ 58 (171)
T ss_dssp EEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCSEEES-CGGGG------------------
T ss_pred EEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcchhhhh-hhhhh------------------
Confidence 555655 55555555332 2 4899999999988776643 33212221 11111
Q ss_pred ccCCCCCCEEEEccCCccccccccCCCCcccCChhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCccccHHHHHHH
Q psy15212 211 FYKNKYFDRILADLPCTGSGVVRRNPDIPWLRRKNDIKKLSKYSCKILNNLWKMLKPGGKLLFVTCSLWFEESEEQAIIF 290 (329)
Q Consensus 211 ~~~~~~fD~Vl~D~PCsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~lL~~a~~~LkpgG~lvysTCS~~~~Ene~vv~~~ 290 (329)
.....|.|++-.|- +. ..++++.....+++ +.++..+||.-..--+. ++..
T Consensus 59 --~~~~~dlIila~p~------------------~~-------~~~vl~~l~~~~~~-~~ii~d~~s~k~~~~~~-~~~~ 109 (171)
T d2g5ca2 59 --EDFSPDFVMLSSPV------------------RT-------FREIAKKLSYILSE-DATVTDQGSVKGKLVYD-LENI 109 (171)
T ss_dssp --GGTCCSEEEECSCH------------------HH-------HHHHHHHHHHHSCT-TCEEEECCSCCTHHHHH-HHHH
T ss_pred --hccccccccccCCc------------------hh-------hhhhhhhhhccccc-cccccccccccHHHHHH-HHHh
Confidence 12468999887661 11 23456666677776 46778888876543333 3334
Q ss_pred Hh
Q psy15212 291 SK 292 (329)
Q Consensus 291 l~ 292 (329)
+.
T Consensus 110 ~~ 111 (171)
T d2g5ca2 110 LG 111 (171)
T ss_dssp HG
T ss_pred hc
Confidence 43
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.42 E-value=1.3 Score=36.85 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=51.3
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhccccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNR 208 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 208 (329)
.|..+|=.|++. |.+..+|+.+ +.+|+.+|++++.++.+.+.+. .+..+.+|.++... +.--.+ ..-+
T Consensus 5 ~GK~alITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~--v~~~~~-~~~~- 75 (250)
T d1ydea1 5 AGKVVVVTGGGR-GIGAGIVRAFVNSGARVVICDKDESGGRALEQELP----GAVFILCDVTQEDD--VKTLVS-ETIR- 75 (250)
T ss_dssp TTCEEEEETCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHH--HHHHHH-HHHH-
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHH--HHHHHH-HHHH-
Confidence 477788787665 5766666644 3799999999998877665432 36778899887541 100000 0000
Q ss_pred ccccCCCCCCEEEEccCC
Q psy15212 209 FRFYKNKYFDRILADLPC 226 (329)
Q Consensus 209 ~~~~~~~~fD~Vl~D~PC 226 (329)
.-+..|.++.++-.
T Consensus 76 ----~~g~iDilVnnAG~ 89 (250)
T d1ydea1 76 ----RFGRLDCVVNNAGH 89 (250)
T ss_dssp ----HHSCCCEEEECCCC
T ss_pred ----hcCCCCEEEecccc
Confidence 11578999987753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.47 E-value=6.2 Score=32.26 Aligned_cols=61 Identities=23% Similarity=0.169 Sum_probs=45.7
Q ss_pred CCCeEEeecCCCchHHHHHHHhC---CCEEEEEeCChhHHHHHHHHHHHc--CCceEEEecCccccc
Q psy15212 132 SGMYVLDACSAPGGKTCHLLEIA---DIKLISVDNNLSRLNMISENLKRL--NLKATLILSDISKIN 193 (329)
Q Consensus 132 ~g~~VLDlcag~G~kt~~la~~~---~~~v~avD~~~~rl~~l~~n~~~~--g~~v~~~~~D~~~~~ 193 (329)
.|..+|=.|++ +|.+..+|+.+ |.+|+.+|.+.++++.+...+... +.++..+..|.++..
T Consensus 2 ~GKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~ 67 (254)
T d2gdza1 2 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQ 67 (254)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHH
Confidence 36677877766 55777777654 379999999999999888887654 234778889998754
|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Positive regulator of the amidase operon AmiR domain: Positive regulator of the amidase operon AmiR species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.30 E-value=1.9 Score=33.51 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHhCCCEEEEEeCChhHHHHHHHHHHHcCCceEEEecCccccchhhhhhhhcccccccccccCCCCCCEEEEcc
Q psy15212 150 LLEIADIKLISVDNNLSRLNMISENLKRLNLKATLILSDISKINLKKLYIDINKKTNNRFRFYKNKYFDRILADL 224 (329)
Q Consensus 150 la~~~~~~v~avD~~~~rl~~l~~n~~~~g~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vl~D~ 224 (329)
+..+.+.+|.-+|-++...+.+...+++.|+.+.... ++... ....||.||+|-
T Consensus 6 ~~~l~~~~iLvvdd~~~~~~~l~~~L~~~G~~v~~~~-~~~~a--------------------l~~~~Dlvl~D~ 59 (189)
T d1qo0d_ 6 LGSLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCW-PPPEA--------------------FDVPVDVVFTSI 59 (189)
T ss_dssp HHTGGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEEC-SCCSS--------------------CSSCCSEEEEEC
T ss_pred HHhccCCEEEEEeCCHHHHHHHHHHHHHcCCcceecC-CHHHh--------------------ccCCCCEEEEcC
Confidence 3333346999999999999999999999998865443 22221 135799999985
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=80.14 E-value=0.97 Score=30.66 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=35.3
Q ss_pred CCCCCCeEEeecC--CCchHHHHHHHhCCCEEEEEeCChhHHHHHHH
Q psy15212 129 DIRSGMYVLDACS--APGGKTCHLLEIADIKLISVDNNLSRLNMISE 173 (329)
Q Consensus 129 ~~~~g~~VLDlca--g~G~kt~~la~~~~~~v~avD~~~~rl~~l~~ 173 (329)
.++++++||=.++ |.|..++++++.++.+|+++--+++..+.+++
T Consensus 28 ~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH
T ss_pred hccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 3567888887654 45567788888888899999999999888765
|