Psyllid ID: psy15231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MYLMGFEPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHEEEEccccccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mylmgfepgpvdrnamsgtesrthtttcehsGVAFLTLLERKVLSFIQlrkgpnkrgvigifqpFSDAIKLYTKEffiplksndypywvtPLISLGVSLGT
Flexible Loop (DISEMBL)
mylmgfepgpvdrnAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFiqlrkgpnkrgvIGIFQPFSDAIKLYTKEFFIPlksndypyWVTPLISLGVSLGT
Low Complexity Region (SEG)
MYLMGFEPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT
Disordered region (IsUnstruct)
**************************TCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGV****
Disordered Region (DISOPRED)
*Y****EPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT
Disordered Region (DISEMBL)
MYLMGFEPGPVDRNAM***********CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT
Disordered Region (DISPRO)
*YLMGFEPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLMGFEPGPVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
B0FWD8	313	NADH-ubiquinone oxidoredu	N/A	N/A	0.732	0.236	0.608	2e-18
P51930	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.732	0.453	0.608	5e-18
P33502	314	NADH-ubiquinone oxidoredu	N/A	N/A	0.732	0.235	0.608	5e-18
P84301	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.712	0.441	0.625	6e-18
P51926	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.712	0.441	0.625	6e-18
P84300	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.712	0.441	0.625	6e-18
P51938	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.732	0.453	0.608	6e-18
P34846	314	NADH-ubiquinone oxidoredu	yes	N/A	0.732	0.235	0.608	6e-18
P84302	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.712	0.441	0.625	7e-18
P51931	163	NADH-ubiquinone oxidoredu	N/A	N/A	0.712	0.441	0.625	7e-18

>sp|B0FWD8|NU1M_AEDAE NADH-ubiquinone oxidoreductase chain 1 OS=Aedes aegypti GN=mt:ND1 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 55/74 (74%)

Query: 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDY 85
            C   GVAFLTLLERKVL +IQ+RKGPNK G +G+ QPFSDA+KL+TKE   PL SN  
Sbjct: 14 VICVMVGVAFLTLLERKVLGYIQIRKGPNKVGFMGLLQPFSDAVKLFTKEQTYPLLSNYI 73

Query: 86 PYWVTPLISLGVSL 99
           Y+ +P+ SL +SL
Sbjct: 74 FYYFSPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Aedes aegypti (taxid: 7159)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 3

>sp|P51930|NU1M_DROBF NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila bifasciata GN=mt:ND1 PE=3 SV=2

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 55/74 (74%)

Query: 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDY 85
            C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN  
Sbjct: 14 VICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYL 73

Query: 86 PYWVTPLISLGVSL 99
           Y+++P+ SL +SL
Sbjct: 74 SYYISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila bifasciata (taxid: 7218)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P33502|NU1M_ANOQU NADH-ubiquinone oxidoreductase chain 1 OS=Anopheles quadrimaculatus GN=ND1 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 54/74 (72%)

Query: 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDY 85
            C   GVAFLTLLERKVL +IQ+RKGPNK G  G+ QPFSDA+KL+TKE   PL SN  
Sbjct: 15 VICVMVGVAFLTLLERKVLGYIQIRKGPNKVGFNGLLQPFSDAVKLFTKEQTYPLLSNYI 74

Query: 86 PYWVTPLISLGVSL 99
           Y+ +P+ SL +SL
Sbjct: 75 SYYFSPIFSLFLSL 88

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Anopheles quadrimaculatus (taxid: 7166)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P84301|NU1M_DROAL NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila algonquin GN=mt:ND1 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 28 CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPY 87
          C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN   Y
Sbjct: 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75

Query: 88 WVTPLISLGVSL 99
          +++P+ SL +SL
Sbjct: 76 YISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila algonquin (taxid: 7247)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P51926|NU1M_DROAI NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila affinis GN=mt:ND1 PE=3 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 28 CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPY 87
          C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN   Y
Sbjct: 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75

Query: 88 WVTPLISLGVSL 99
          +++P+ SL +SL
Sbjct: 76 YISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila affinis (taxid: 7246)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P84300|NU1M_DROAZ NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila azteca GN=mt:ND1 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 28 CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPY 87
          C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN   Y
Sbjct: 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75

Query: 88 WVTPLISLGVSL 99
          +++P+ SL +SL
Sbjct: 76 YISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila azteca (taxid: 7249)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P51938|NU1M_DROSS NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila subsilvestris GN=mt:ND1 PE=3 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 55/74 (74%)

Query: 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDY 85
            C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN  
Sbjct: 14 VICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYL 73

Query: 86 PYWVTPLISLGVSL 99
           Y+++P+ SL +SL
Sbjct: 74 SYYISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila subsilvestris (taxid: 7239)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P34846|NU1M_ANOGA NADH-ubiquinone oxidoreductase chain 1 OS=Anopheles gambiae GN=mt:ND1 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/74 (60%), Positives = 54/74 (72%)

Query: 26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDY 85
            C   GVAFLTLLERKVL +IQ+RKGPNK G  G+ QPFSDA+KL+TKE   PL SN  
Sbjct: 15 VICVMVGVAFLTLLERKVLGYIQIRKGPNKVGFNGLLQPFSDAVKLFTKEQTYPLLSNYI 74

Query: 86 PYWVTPLISLGVSL 99
           Y+ +P+ SL +SL
Sbjct: 75 SYYFSPVFSLFLSL 88

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Anopheles gambiae (taxid: 7165)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P84302|NU1M_DROTR NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila tristis GN=mt:ND1 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 28 CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPY 87
          C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN   Y
Sbjct: 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75

Query: 88 WVTPLISLGVSL 99
          +++P+ SL +SL
Sbjct: 76 YISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila tristis (taxid: 7284)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

>sp|P51931|NU1M_DROGU NADH-ubiquinone oxidoreductase chain 1 (Fragments) OS=Drosophila guanche GN=mt:ND1 PE=3 SV=2

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query: 28 CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPY 87
          C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN   Y
Sbjct: 16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75

Query: 88 WVTPLISLGVSL 99
          +++P+ SL +SL
Sbjct: 76 YISPIFSLFLSL 87

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Drosophila guanche (taxid: 7266)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
407914474	304	NADH dehydrogenase subunit 1 (mitochondr	0.673	0.223	0.735	2e-24
51243165	304	NADH dehydrogenase subunit 1 [Bactericer	0.673	0.223	0.735	2e-24
51243168	305	NADH dehydrogenase subunit 1 [Calophya s	0.673	0.222	0.720	6e-23
51830075	304	NADH dehydrogenase subunit 1 [Pachypsyll	0.673	0.223	0.720	1e-20
46575802	312	NADH dehydrogenase subunit 1 (mitochondr	0.782	0.253	0.632	5e-19
371591209	312	NADH dehydrogenase subunit 1 (mitochondr	0.782	0.253	0.632	5e-19
371591221	312	NADH dehydrogenase subunit 1 (mitochondr	0.782	0.253	0.632	5e-19
360040810	312	NADH dehydrogenase subunit 1 (mitochondr	0.782	0.253	0.632	8e-19
12642516	129	NADH dehydrogenase subunit 1 [Euphausia	0.782	0.612	0.632	8e-19
8489064	308	NADH dehydrogenase subunit 1 (mitochondr	0.782	0.256	0.620	8e-19

>gi|407914474|gb|AFU51375.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli] gi|407914477|gb|AFU51377.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli] gi|407914480|gb|AFU51379.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli] gi|407914483|gb|AFU51381.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli] gi|407914486|gb|AFU51383.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli] gi|407914489|gb|AFU51385.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli] gi|407914492|gb|AFU51387.1| NADH dehydrogenase subunit 1 (mitochondrion) [Bactericera cockerelli]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 62/68 (91%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
          GVAFLTLLERK+L ++QLRKGPNK GV+G+FQPFSDAIKLYTKE+F PLKSN YPYW++P
Sbjct: 18 GVAFLTLLERKILGYVQLRKGPNKVGVLGLFQPFSDAIKLYTKEYFFPLKSNFYPYWISP 77

Query: 92 LISLGVSL 99
          ++ L +S+
Sbjct: 78 IVILSISV 85

Source: Bactericera cockerelli

Species: Bactericera cockerelli

Genus: Bactericera

Family: Triozidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51243165|gb|AAT99378.1| NADH dehydrogenase subunit 1 [Bactericera cockerelli]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 62/68 (91%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
          GVAFLTLLERK+L ++QLRKGPNK GV+G+FQPFSDAIKLYTKE+F PLKSN YPYW++P
Sbjct: 18 GVAFLTLLERKILGYVQLRKGPNKVGVLGLFQPFSDAIKLYTKEYFFPLKSNFYPYWISP 77

Query: 92 LISLGVSL 99
          ++ L +S+
Sbjct: 78 IVILSISV 85

Source: Bactericera cockerelli

Species: Bactericera cockerelli

Genus: Bactericera

Family: Triozidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51243168|gb|AAT99380.1| NADH dehydrogenase subunit 1 [Calophya schini]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
          GVAFLTLLERK+L ++Q RKGPN  G++G+FQPFSDA+KLYTKEFF P KSN Y YWVTP
Sbjct: 19 GVAFLTLLERKILGYVQFRKGPNSVGILGLFQPFSDAVKLYTKEFFFPSKSNYYIYWVTP 78

Query: 92 LISLGVSL 99
           IS+ +SL
Sbjct: 79 FISIVISL 86

Source: Calophya schini

Species: Calophya schini

Genus: Calophya

Family: Calophyidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51830075|ref|YP_073295.1| NADH dehydrogenase subunit 1 [Pachypsylla venusta] gi|37957995|gb|AAP14660.1| NADH dehydrogenase subunit 1 [Pachypsylla venusta] gi|45826293|gb|AAS77793.1| NADH dehydrogenase subunit 1 [Pachypsylla venusta]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 56/68 (82%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           VAFLTLLERK+L  IQ RKGPNK G  G+FQPFSDAIKL+TKEF  PLK N YP+W++P
Sbjct: 18 SVAFLTLLERKILGLIQFRKGPNKTGFYGVFQPFSDAIKLFTKEFNSPLKINFYPFWLSP 77

Query: 92 LISLGVSL 99
          +ISL VSL
Sbjct: 78 VISLCVSL 85

Source: Pachypsylla venusta

Species: Pachypsylla venusta

Genus: Pachypsylla

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|46575802|dbj|BAD16772.1| NADH dehydrogenase subunit 1 (mitochondrion) [Euphausia superba] gi|197940783|gb|ACH78215.1| NADH dehydrogenase subunit 1 [Euphausia superba]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 57/79 (72%)

Query: 21 SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
          S      C   GVAFLTLLERKVL +IQ+RKGPNK G IGI QPFSDAIKL+TKE   P 
Sbjct: 8  SYILVVICVLVGVAFLTLLERKVLGYIQIRKGPNKVGFIGILQPFSDAIKLFTKEQTYPT 67

Query: 81 KSNDYPYWVTPLISLGVSL 99
           SN  PY+++P+ SL VSL
Sbjct: 68 MSNFMPYYLSPVFSLFVSL 86

Source: Euphausia superba

Species: Euphausia superba

Genus: Euphausia

Family: Euphausiidae

Order: Euphausiacea

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|371591209|gb|AEX54951.1| NADH dehydrogenase subunit 1 (mitochondrion) [Euphausia superba]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 57/79 (72%)

Query: 21 SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
          S      C   GVAFLTLLERKVL +IQ+RKGPNK G IGI QPFSDAIKL+TKE   P 
Sbjct: 8  SYILVVICVLVGVAFLTLLERKVLGYIQIRKGPNKVGFIGILQPFSDAIKLFTKEQTYPT 67

Query: 81 KSNDYPYWVTPLISLGVSL 99
           SN  PY+++P+ SL VSL
Sbjct: 68 MSNFMPYYLSPVFSLFVSL 86

Source: Euphausia superba

Species: Euphausia superba

Genus: Euphausia

Family: Euphausiidae

Order: Euphausiacea

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|371591221|gb|AEX54962.1| NADH dehydrogenase subunit 1 (mitochondrion) [Euphausia superba]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 57/79 (72%)

Query: 21 SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
          S      C   GVAFLTLLERKVL +IQ+RKGPNK G IGI QPFSDAIKL+TKE   P 
Sbjct: 8  SYILVVICVLVGVAFLTLLERKVLGYIQIRKGPNKVGFIGILQPFSDAIKLFTKEQTYPT 67

Query: 81 KSNDYPYWVTPLISLGVSL 99
           SN  PY+++P+ SL VSL
Sbjct: 68 MSNFMPYYLSPVFSLFVSL 86

Source: Euphausia superba

Species: Euphausia superba

Genus: Euphausia

Family: Euphausiidae

Order: Euphausiacea

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|360040810|gb|AEV91684.1| NADH dehydrogenase subunit 1 (mitochondrion) [Euphausia pacifica]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 57/79 (72%)

Query: 21 SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
          S      C   GVAFLTLLERKVL +IQ+RKGPNK G IGI QPFSDAIKL+TKE   P 
Sbjct: 8  SYILLVICVLVGVAFLTLLERKVLGYIQIRKGPNKVGFIGILQPFSDAIKLFTKEQTYPT 67

Query: 81 KSNDYPYWVTPLISLGVSL 99
           SN  PY+++P+ SL VSL
Sbjct: 68 MSNFMPYYLSPVFSLFVSL 86

Source: Euphausia pacifica

Species: Euphausia pacifica

Genus: Euphausia

Family: Euphausiidae

Order: Euphausiacea

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12642516|gb|AAK00267.1|AF281263_1 NADH dehydrogenase subunit 1 [Euphausia superba]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 57/79 (72%)

Query: 21 SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
          S      C   GVAFLTLLERKVL +IQ+RKGPNK G IGI QPFSDAIKL+TKE   P 
Sbjct: 4  SYILVVICVLVGVAFLTLLERKVLGYIQIRKGPNKVGFIGILQPFSDAIKLFTKEQTXPT 63

Query: 81 KSNDYPYWVTPLISLGVSL 99
           SN  PY+++P+ SL VSL
Sbjct: 64 MSNFMPYYLSPVFSLFVSL 82

Source: Euphausia superba

Species: Euphausia superba

Genus: Euphausia

Family: Euphausiidae

Order: Euphausiacea

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|8489064|gb|AAF75585.1|AF149775_2 NADH dehydrogenase subunit 1 (mitochondrion) [Meganyctiphanes norvegica]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 58/79 (73%)

Query: 21 SRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPL 80
          S      C   GVAFLTLLERKVL++IQ+RKGPNK G IGI QPF+DAIKL+TKE   P 
Sbjct: 4  SYILLVICVLVGVAFLTLLERKVLAYIQIRKGPNKVGFIGILQPFADAIKLFTKEQTYPT 63

Query: 81 KSNDYPYWVTPLISLGVSL 99
           SN  PY+++P+ SL VSL
Sbjct: 64 MSNFLPYYLSPVFSLFVSL 82

Source: Meganyctiphanes norvegica

Species: Meganyctiphanes norvegica

Genus: Meganyctiphanes

Family: Euphausiidae

Order: Euphausiacea

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0013679	312	mt:ND1 "mitochondrial NADH-ubi	0.712	0.230	0.625	7.5e-18
UNIPROTKB|P92604	318	MT-ND1 "NADH-ubiquinone oxidor	0.663	0.210	0.522	5.1e-13
UNIPROTKB|P03887	318	MT-ND1 "NADH-ubiquinone oxidor	0.663	0.210	0.522	1.1e-12
UNIPROTKB|Q6QTH1	318	ND1 "NADH-ubiquinone oxidoredu	0.663	0.210	0.522	1.1e-12
UNIPROTKB|O79874	318	MT-ND1 "NADH-ubiquinone oxidor	0.663	0.210	0.507	1.1e-12
TIGR_CMR|ECH_0617	367	ECH_0617 "NADH dehydrogenase I	0.663	0.182	0.492	1.7e-12
TIGR_CMR|APH_0711	340	APH_0711 "NADH dehydrogenase I	0.663	0.197	0.477	3e-12
MGI|MGI:101787	318	mt-Nd1 "mitochondrially encode	0.663	0.210	0.507	4e-12
UNIPROTKB|H9KVF8	318	7066247 "NADH-ubiquinone oxido	0.663	0.210	0.507	4e-12
UNIPROTKB|P18936	324	MT-ND1 "NADH-ubiquinone oxidor	0.663	0.206	0.477	5.6e-12

FB|FBgn0013679 mt:ND1 "mitochondrial NADH-ubiquinone oxidoreductase chain 1" [Drosophila melanogaster (taxid:7227)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query:    28 CEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPY 87
             C    VAFLTLLERKVL +IQ+RKGPNK G++GI QPF DAIKL+TKE   PL SN   Y
Sbjct:    16 CVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSY 75

Query:    88 WVTPLISLGVSL 99
             +++P+ SL +SL
Sbjct:    76 YISPIFSLFLSL 87

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=NAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|P92604 MT-ND1 "NADH-ubiquinone oxidoreductase chain 1" [Canis lupus familiaris (taxid:9615)]

 Score = 175 (66.7 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VAFLTL+ERKVL ++QLRKGPN  G  G+ QP +DA+KL+TKE   PL S+   + + P+
Sbjct:    17 VAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSMSMFILAPI 76

Query:    93 ISLGVSL 99
             ++L ++L
Sbjct:    77 LALSLAL 83

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P03887 MT-ND1 "NADH-ubiquinone oxidoreductase chain 1" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 35/67 (52%), Positives = 49/67 (73%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VAFLTL+ERKVL ++QLRKGPN  G  G+ QP +DAIKL+ KE   P  S+   + + P+
Sbjct:    17 VAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSASMFILAPI 76

Query:    93 ISLGVSL 99
             ++LG++L
Sbjct:    77 MALGLAL 83

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6QTH1 ND1 "NADH-ubiquinone oxidoreductase chain 1" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 35/67 (52%), Positives = 49/67 (73%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VAFLTL+ERKVL ++QLRKGPN  G  G+ QP +DAIKL+ KE   P  S+   + + P+
Sbjct:    17 VAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSASMFILAPI 76

Query:    93 ISLGVSL 99
             ++LG++L
Sbjct:    77 MALGLAL 83

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O79874 MT-ND1 "NADH-ubiquinone oxidoreductase chain 1" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VAFLTL+ERKVL ++QLRKGPN  G  G+ QP +DA+KL+TKE   P  S+   + + P+
Sbjct:    17 VAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPLRPATSSISMFIIAPI 76

Query:    93 ISLGVSL 99
             ++L ++L
Sbjct:    77 LALSLAL 83

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TIGR_CMR|ECH_0617 ECH_0617 "NADH dehydrogenase I, H subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 172 (65.6 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 33/67 (49%), Positives = 47/67 (70%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VA+L  +ERKV++ IQLR+GPN  G  G+ QPF+DA+KL  KE  IP KSN   + + P+
Sbjct:    35 VAYLVYMERKVIAAIQLRQGPNVVGPFGLLQPFADAVKLIIKEHIIPFKSNKICFLIAPI 94

Query:    93 ISLGVSL 99
             I+  ++L
Sbjct:    95 ITFTLAL 101

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

TIGR_CMR|APH_0711 APH_0711 "NADH dehydrogenase I, H subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 169 (64.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VA+L  +ERKV++F+QLR GP+  G  G+ QPFSDA+KL  KE  IP KS  + ++  P+
Sbjct:    17 VAYLVYMERKVMAFMQLRHGPSVVGPWGLLQPFSDALKLLAKECIIPFKSRGWAFFAAPV 76

Query:    93 ISLGVSL 99
             I+  ++L
Sbjct:    77 ITFALAL 83

GO:0016021 "integral to membrane" evidence=ISS

GO:0050136 "NADH dehydrogenase (quinone) activity" evidence=ISS

MGI|MGI:101787 mt-Nd1 "mitochondrially encoded NADH dehydrogenase 1" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             +AFLTL+ERK+L ++QLRKGPN  G  GI QPF+DA+KL+ KE   PL ++   + + P 
Sbjct:    17 MAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSMSLFIIAPT 76

Query:    93 ISLGVSL 99
             +SL ++L
Sbjct:    77 LSLTLAL 83

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033194 "response to hydroperoxide" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|H9KVF8 7066247 "NADH-ubiquinone oxidoreductase chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             +AFLTL+ERK+L ++QLRKGPN  G  GI QPF+DA+KL+ KE   PL ++   + + P 
Sbjct:    17 MAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSMSLFIIAPT 76

Query:    93 ISLGVSL 99
             +SL ++L
Sbjct:    77 LSLTLAL 83

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P18936 MT-ND1 "NADH-ubiquinone oxidoreductase chain 1" [Gallus gallus (taxid:9031)]

 Score = 166 (63.5 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 32/67 (47%), Positives = 49/67 (73%)

Query:    33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
             VAFLTL+ERK+LS++Q RKGPN  G  G+ QP +D +KL+ KE   P  S+ + + +TP+
Sbjct:    24 VAFLTLVERKILSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFIITPI 83

Query:    93 ISLGVSL 99
             ++L ++L
Sbjct:    84 LALLLAL 90

GO:0016021 "integral to membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P18929	NU1M_DROME	1, ., 6, ., 5, ., 3	0.625	0.7128	0.2307	yes	N/A
O78703	NU1M_MONDO	1, ., 6, ., 5, ., 3	0.5441	0.6732	0.2138	yes	N/A
Q37717	NU1M_ORNAN	1, ., 6, ., 5, ., 3	0.5147	0.6732	0.2138	yes	N/A
P34846	NU1M_ANOGA	1, ., 6, ., 5, ., 3	0.6081	0.7326	0.2356	yes	N/A
Q9TA29	NU1M_LOXAF	1, ., 6, ., 5, ., 3	0.5147	0.6732	0.2138	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
MTH00193	306	MTH00193, ND1, NADH dehydrogenase subunit 1; Provi	2e-33
MTH00143	307	MTH00143, ND1, NADH dehydrogenase subunit 1; Provi	8e-30
MTH00225	305	MTH00225, ND1, NADH dehydrogenase subunit 1; Provi	1e-27
MTH00218	311	MTH00218, ND1, NADH dehydrogenase subunit 1; Provi	2e-23
pfam00146	309	pfam00146, NADHdh, NADH dehydrogenase	3e-22
MTH00195	307	MTH00195, ND1, NADH dehydrogenase subunit 1; Provi	2e-21
MTH00054	324	MTH00054, ND1, NADH dehydrogenase subunit 1; Provi	1e-20
MTH00216	327	MTH00216, ND1, NADH dehydrogenase subunit 1; Provi	3e-20
MTH00040	323	MTH00040, ND1, NADH dehydrogenase subunit 1; Valid	8e-20
MTH00104	318	MTH00104, ND1, NADH dehydrogenase subunit 1; Provi	8e-20
MTH00111	323	MTH00111, ND1, NADH dehydrogenase subunit 1; Provi	2e-19
MTH00010	311	MTH00010, ND1, NADH dehydrogenase subunit 1; Valid	2e-19
MTH00134	324	MTH00134, ND1, NADH dehydrogenase subunit 1; Provi	2e-17
MTH00071	322	MTH00071, ND1, NADH dehydrogenase subunit 1; Provi	1e-16
COG1005	332	COG1005, NuoH, NADH:ubiquinone oxidoreductase subu	2e-16
PRK06076	322	PRK06076, PRK06076, NADH:ubiquinone oxidoreductase	6e-16
MTH00029	343	MTH00029, ND1, NADH dehydrogenase subunit 1; Provi	3e-15
MTH00058	293	MTH00058, ND1, NADH dehydrogenase subunit 1; Provi	1e-14
MTH00090	284	MTH00090, ND1, NADH dehydrogenase subunit 1; Provi	1e-13
CHL00032	363	CHL00032, ndhA, NADH dehydrogenase subunit 1	2e-07
COG0650	309	COG0650, HyfC, Formate hydrogenlyase subunit 4 [En	6e-07

>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional

 Score =  116 bits (294), Expect = 2e-33
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           VAFLTLLERKVL +IQ+RKGPNK G +GI QPFSDAIKL+TKE   PL SN   Y+ +P
Sbjct: 18 SVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSP 77

Query: 92 LISLGVSL 99
          + SL +SL
Sbjct: 78 VFSLFLSL 85

Length = 306

>gnl|CDD|177201 MTH00143, ND1, NADH dehydrogenase subunit 1; Provisional

 Score =  107 bits (269), Expect = 8e-30
 Identities = 37/69 (53%), Positives = 52/69 (75%)

Query: 32  GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
            VAF TLLERK L + Q+RKGPNK G++G+ QP +DA+KL+TKEF  P  SN +P+++ P
Sbjct: 17  AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAP 76

Query: 92  LISLGVSLG 100
            +SL ++L 
Sbjct: 77  CLSLILALL 85

Length = 307

>gnl|CDD|214465 MTH00225, ND1, NADH dehydrogenase subunit 1; Provisional

 Score =  101 bits (254), Expect = 1e-27
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query: 32  GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
            VAF TLLERKVL +IQLRKGPNK G++G+ QPF+DA+KL+TKE   P  SN  PY++ P
Sbjct: 17  SVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAP 76

Query: 92  LISLGVSLGT 101
           ++SL +SL  
Sbjct: 77  ILSLILSLIL 86

Length = 305

>gnl|CDD|214463 MTH00218, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 90.4 bits (225), Expect = 2e-23
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VAFLTLLERKVL ++QLRKGPN  G  G+ QP +D +KL+ KE   P  S+ + + + P+
Sbjct: 19 VAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPI 78

Query: 93 ISLGVSL 99
          ++L ++L
Sbjct: 79 LALTLAL 85

Length = 311

>gnl|CDD|109212 pfam00146, NADHdh, NADH dehydrogenase

 Score = 87.3 bits (217), Expect = 3e-22
 Identities = 33/68 (48%), Positives = 50/68 (73%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           VAFLTLLERKVL ++Q RKGPN  G +G+ QPF+D +KL+ KE  +P  S+ + + + P
Sbjct: 16 SVAFLTLLERKVLGYMQQRKGPNVVGPLGLLQPFADGLKLFIKEPVVPSTSSPFLFTLAP 75

Query: 92 LISLGVSL 99
          +++L ++L
Sbjct: 76 VLALTLAL 83

Length = 309

>gnl|CDD|214452 MTH00195, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 85.6 bits (212), Expect = 2e-21
 Identities = 34/67 (50%), Positives = 49/67 (73%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VAF TLLERK+L +IQLRKGPNK G  G+ QP +DA+KL+ KE   P  S+ + ++  P+
Sbjct: 19 VAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPV 78

Query: 93 ISLGVSL 99
          ++L ++L
Sbjct: 79 LALALAL 85

Length = 307

>gnl|CDD|177127 MTH00054, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 83.6 bits (207), Expect = 1e-20
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          +A+LTL ERKVL +IQ RKGPN  GV G+ QP +D +KL+TKE  IP  +N + Y + P+
Sbjct: 19 IAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPI 78

Query: 93 ISLGVSL 99
          +SL ++ 
Sbjct: 79 LSLTLAF 85

Length = 324

>gnl|CDD|164761 MTH00216, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 82.5 bits (204), Expect = 3e-20
 Identities = 36/67 (53%), Positives = 49/67 (73%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VA+LTL ERKVL ++Q RKGPN  GV G+ QPF+D +KL+TKE  IP  +N + Y V P+
Sbjct: 23 VAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPV 82

Query: 93 ISLGVSL 99
          +S  ++L
Sbjct: 83 LSFTLAL 89

Length = 327

>gnl|CDD|214409 MTH00040, ND1, NADH dehydrogenase subunit 1; Validated

 Score = 81.2 bits (201), Expect = 8e-20
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           VAFLTL+ERKVL ++Q RKGPN  G  G+ QPF+D +KL+ KE   P  ++ Y ++ +P
Sbjct: 20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSP 79

Query: 92 LISLGVSL 99
          ++ L ++L
Sbjct: 80 VLFLFLAL 87

Length = 323

>gnl|CDD|177166 MTH00104, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 80.8 bits (200), Expect = 8e-20
 Identities = 36/67 (53%), Positives = 51/67 (76%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VAFLTL+ERKVL ++QLRKGPN  G  G+ QPF+DA+KL+TKE   PL S+   + + P+
Sbjct: 17 VAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPI 76

Query: 93 ISLGVSL 99
          ++L ++L
Sbjct: 77 LALTLAL 83

Length = 318

>gnl|CDD|214422 MTH00111, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VAFLTLLERK+L ++QLRKGPN  G  G+ QP +D +KL+ KE   P  S+   + +TP+
Sbjct: 22 VAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

Query: 93 ISLGVSL 99
          ++L ++L
Sbjct: 82 LALLLAL 88

Length = 323

>gnl|CDD|164586 MTH00010, ND1, NADH dehydrogenase subunit 1; Validated

 Score = 79.8 bits (197), Expect = 2e-19
 Identities = 38/67 (56%), Positives = 49/67 (73%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          +AF TLLERK L + QLRKGPNK G+ GI QPF+DAIKL+TKE   P  +N  P+   P+
Sbjct: 20 MAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPM 79

Query: 93 ISLGVSL 99
          +SL ++L
Sbjct: 80 MSLILAL 86

Length = 311

>gnl|CDD|177192 MTH00134, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VAFLTLLERKVL ++QLRKGPN  G  G+ QP +D +KL+ KE   P  S+ + +  TP+
Sbjct: 23 VAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

Query: 93 ISLGVSL 99
          ++L ++L
Sbjct: 83 LALTLAL 89

Length = 324

>gnl|CDD|214418 MTH00071, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VAFLTL+ERKVL ++QLRKGPN  G +G+ QP +D +KL+ KE   P  S+   + + P 
Sbjct: 22 VAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

Query: 93 ISLGVSL 99
          ++L ++L
Sbjct: 82 MALTLAL 88

Length = 322

>gnl|CDD|223937 COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
           AFL   ERK+ + +QLR GPN+ G  G+ Q  +DAIKL+ KE  IP  ++ + + + P+
Sbjct: 29 GAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFLFTLAPI 88

Query: 93 ISLGVSL 99
          I+L  + 
Sbjct: 89 IALIPAF 95

Length = 332

>gnl|CDD|235692 PRK06076, PRK06076, NADH:ubiquinone oxidoreductase subunit H; Provisional

 Score = 70.6 bits (174), Expect = 6e-16
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           VAFL   ERKVL+ +QLR GPN+ G  G+ Q  +D IKL  KE  IP  ++   + + P
Sbjct: 26 CVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAP 85

Query: 92 LISL 95
          +I+ 
Sbjct: 86 VIAF 89

Length = 322

>gnl|CDD|177108 MTH00029, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 68.9 bits (168), Expect = 3e-15
 Identities = 32/67 (47%), Positives = 46/67 (68%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL 92
          VA+LTL ERKVL  +Q RKGP   G  G+ QP +D +KL TKE  IP ++N + Y++ P+
Sbjct: 24 VAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83

Query: 93 ISLGVSL 99
          IS  +++
Sbjct: 84 ISFTLAI 90

Length = 343

>gnl|CDD|177130 MTH00058, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 33 VAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTK 74
          VAF  L ERK+L +IQLRKGPNK G++G+ Q F+D +KL  K
Sbjct: 18 VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVK 59

Length = 293

>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 32 GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           +AF+TL ER +L   Q R GPNK   +G+ Q   D +KL  KE  +PL S+D  + + P
Sbjct: 12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVP 71

Query: 92 LISLGVSL 99
           +S  V  
Sbjct: 72 GVSFVVMY 79

Length = 284

>gnl|CDD|214341 CHL00032, ndhA, NADH dehydrogenase subunit 1

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 32  GVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP 91
           GV  +  LER++ + IQ R GP   G +GI Q  +D  KL  KE  +P + +        
Sbjct: 43  GVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGD------IR 96

Query: 92  LISLGVSL 99
           L S+G S+
Sbjct: 97  LFSIGPSI 104

Length = 363

>gnl|CDD|223723 COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 39 LERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS 98
          + RKV + IQ R GP       I QP+ D +KL  KE  IP  S+ + + + P ++LG  
Sbjct: 27 ITRKVRARIQRRIGP------PILQPYYDTLKLLGKETVIPA-SSGWLFRLAPYLALGTL 79

Query: 99 L 99
          L
Sbjct: 80 L 80

Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
MTH00071	322	ND1 NADH dehydrogenase subunit 1; Provisional	99.92
MTH00040	323	ND1 NADH dehydrogenase subunit 1; Validated	99.92
PF00146	311	NADHdh: NADH dehydrogenase; InterPro: IPR001694 NA	99.92
MTH00195	307	ND1 NADH dehydrogenase subunit 1; Provisional	99.92
MTH00058	293	ND1 NADH dehydrogenase subunit 1; Provisional	99.92
MTH00029	343	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00134	324	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00218	311	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00111	323	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00225	305	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00193	306	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
COG1005	332	NuoH NADH:ubiquinone oxidoreductase subunit 1 (cha	99.91
MTH00143	307	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
KOG4770|consensus	315		99.91
MTH00216	327	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00104	318	ND1 NADH dehydrogenase subunit 1; Provisional	99.91
MTH00090	284	ND1 NADH dehydrogenase subunit 1; Provisional	99.9
CHL00032	363	ndhA NADH dehydrogenase subunit 1	99.9
PRK06076	322	NADH:ubiquinone oxidoreductase subunit H; Provisio	99.9
MTH00010	311	ND1 NADH dehydrogenase subunit 1; Validated	99.9
MTH00054	324	ND1 NADH dehydrogenase subunit 1; Provisional	99.9
COG0650	309	HyfC Formate hydrogenlyase subunit 4 [Energy produ	99.74

>MTH00071 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.92  E-value=2.6e-25  Score=174.65  Aligned_cols=87  Identities=38%  Similarity=0.550  Sum_probs=78.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHH
Q psy15231         13 RNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPL   92 (101)
Q Consensus        13 ~~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~   92 (101)
                      ||..+..+..+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||++||.+.|+++|+.+|..+|+
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~   81 (322)
T MTH00071          2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT   81 (322)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcccchhHHHHHHHHhcccCcccchHHHHHHHHH
Confidence            56666666666666667778999999999999999999999999999999999999999999999999999899999999


Q ss_pred             HHHHHhh
Q psy15231         93 ISLGVSL   99 (101)
Q Consensus        93 i~~~~~l   99 (101)
                      +.++.++
T Consensus        82 l~~~~~l   88 (322)
T MTH00071         82 MALTLAL   88 (322)
T ss_pred             HHHHHHH
Confidence            9988765

>MTH00040 ND1 NADH dehydrogenase subunit 1; Validated

Probab=99.92  E-value=4.1e-25  Score=173.76  Aligned_cols=87  Identities=37%  Similarity=0.572  Sum_probs=75.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHH
Q psy15231         14 NAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLI   93 (101)
Q Consensus        14 ~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i   93 (101)
                      |.+....+.+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||+.||.+.|+++|+++|..+|++
T Consensus         2 ~~~~~~~~~l~~~~~~~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l   81 (323)
T MTH00040          2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL   81 (323)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccchhhHHHHHHHhcccchhhhhHHHHHHHHHH
Confidence            34444445555555577789999999999999999999999999999999999999999999999999998999999999


Q ss_pred             HHHHhhc
Q psy15231         94 SLGVSLG  100 (101)
Q Consensus        94 ~~~~~ll  100 (101)
                      +++.++.
T Consensus        82 ~~~~~~~   88 (323)
T MTH00040         82 FLFLALL   88 (323)
T ss_pred             HHHHHHH
Confidence            8887653

>PF00146 NADHdh: NADH dehydrogenase; InterPro: IPR001694 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.92  E-value=1.3e-25  Score=174.89  Aligned_cols=81  Identities=47%  Similarity=0.691  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231         20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL   99 (101)
Q Consensus        20 ~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l   99 (101)
                      +..+..++.+++++++++++|||++|++|+|+|||++|++|++||++|++||++||++.|+++|+++|..+|+++++.++
T Consensus         4 l~~l~~~l~v~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~l~~~~~~   83 (311)
T PF00146_consen    4 LSILIIILFVLLSVAFLTLIERKILARIQRRKGPNKVGPMGILQPFYDLIKLFSKEIIIPNSSNKWLFFLAPILAFILSL   83 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchHHHHHHhcccCcCccccccccccccchhhhhh
Confidence            44556677888999999999999999999999999999999999999999999999999999999999999999988775


Q ss_pred             c
Q psy15231        100 G  100 (101)
Q Consensus       100 l  100 (101)
                      +
T Consensus        84 ~   84 (311)
T PF00146_consen   84 L   84 (311)
T ss_pred             h
Confidence            4

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents subunit 1 NADH:ubiquinone oxidoreductase [, ]. Among the many polypeptide subunits that make up complex I, there are fifteen which are located in the membrane part, seven of which are encoded by the mitochondrial and chloroplast genomes of most species. The most conserved of these organelle-encoded subunits is known as subunit 1 (gene ND1 in mitochondrion, and NDH1 in chloroplast) and seems to contain the ubiquinone binding site. The ND1 subunit is highly similar to subunit 4 of Escherichia coli formate hydrogenlyase (gene hycD), subunit C of hydrogenase-4 (gene hyfC). Paracoccus denitrificans NQO8 and Escherichia coli nuoH NADH-ubiquinone oxidoreductase subunits also belong to this family []. This entry also includes the archaeal F420H2 oxidoreductase subunit H (FPO). FPO shuttles electrons from F420H2, via FAD and iron-sulphur (Fe-S) centres, to quinones in the F420H2:heterodisulphide oxidoreduction chain. The immediate electron acceptor for the enzyme in this species is believed to be methanophenazine. Couples the redox reaction to proton translocation (for every two electrons transferred, 0.9 hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. ; GO: 0055114 oxidation-reduction process, 0016020 membrane

>MTH00195 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.92  E-value=6.1e-25  Score=171.60  Aligned_cols=76  Identities=45%  Similarity=0.724  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      .++.++++++++++.|||++|++|+|+||||+|+.|++||++|++||+.||.+.|+++|.++|..+|++.++.+++
T Consensus        11 ~~~~~l~~~~~~~~~eRKi~a~~Q~R~GP~~~g~~GilQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~i~~~~~l~   86 (307)
T MTH00195         11 QIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALI   86 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCccccchHHhHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHHHH
Confidence            3455667899999999999999999999999999999999999999999999999999999999999998887653

>MTH00058 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.92  E-value=8.3e-25  Score=170.32  Aligned_cols=83  Identities=34%  Similarity=0.428  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHH
Q psy15231         17 SGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLG   96 (101)
Q Consensus        17 ~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~   96 (101)
                      ++.++.+.+++.++.+++++++.|||++|++|+|+|||++|+.|++||++|+.||+.||++.|+++|+++|..+|++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~tl~eRKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~KE~i~p~~~~~~~f~~~P~~~~~   81 (293)
T MTH00058          2 FGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVL   81 (293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCcchhHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHH
Confidence            56677777788888999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             Hhh
Q psy15231         97 VSL   99 (101)
Q Consensus        97 ~~l   99 (101)
                      .++
T Consensus        82 ~~~   84 (293)
T MTH00058         82 LVV   84 (293)
T ss_pred             HHH
Confidence            664

>MTH00029 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=1.5e-24  Score=171.99  Aligned_cols=76  Identities=42%  Similarity=0.682  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      +++.++++++++++.|||++|++|+|+||||+|++|++||++|++||+.||.+.|+++|+++|..+|++++..+++
T Consensus        16 ~~~~~~~~va~~tl~ERKi~a~~Q~R~GPn~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~~~   91 (343)
T MTH00029         16 IFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAIL   91 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCccccHHHHHHHHHHHcCccccchhhHHHHHHHHHHHHHHHHH
Confidence            3444667799999999999999999999999999999999999999999999999999999999999999887764

>MTH00134 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=1.5e-24  Score=170.54  Aligned_cols=79  Identities=43%  Similarity=0.667  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         22 RTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        22 ~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      .+++++.++++++++++.|||++|++|+|+||||+|+.|++||++|++||++||.+.|+++|+++|..+|++.++.+++
T Consensus        12 ~l~~~~~vll~~~~~~~~eRKv~a~~Q~R~GP~~v~~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~l~   90 (324)
T MTH00134         12 PLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALT   90 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCCccccchhhHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence            3444555677899999999999999999999999999999999999999999999999999988999999999887653

>MTH00218 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=1.8e-24  Score=169.26  Aligned_cols=75  Identities=44%  Similarity=0.709  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        26 ~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      ++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||++||.+.|+++|+++|..+|++.+..+++
T Consensus        12 ~~~~~~~~~~~~~~eRKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~l~   86 (311)
T MTH00218         12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALL   86 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcCCCccCccccchHhhHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence            444667799999999999999999999999999999999999999999999999999999999999998877653

>MTH00111 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=2.1e-24  Score=169.56  Aligned_cols=82  Identities=40%  Similarity=0.589  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHh
Q psy15231         19 TESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS   98 (101)
Q Consensus        19 ~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~   98 (101)
                      .++.+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||++||.+.|+++|+++|..+|++.++.+
T Consensus         8 ~~~~l~~~~~~~~~~~~~~~~eRKv~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~   87 (323)
T MTH00111          8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA   87 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCcCCcchhHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            34444445556778999999999999999999999999999999999999999999999999999889999999998876


Q ss_pred             hc
Q psy15231         99 LG  100 (101)
Q Consensus        99 ll  100 (101)
                      +.
T Consensus        88 l~   89 (323)
T MTH00111         88 LT   89 (323)
T ss_pred             HH
Confidence            53

>MTH00225 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=2.6e-24  Score=167.89  Aligned_cols=77  Identities=56%  Similarity=0.854  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         24 HTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        24 ~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      +.++.+++++++++++|||++|++|+|+|||++|++|++||++|+.||+.||.+.|+++|.++|..+|++.++.++.
T Consensus         9 ~~~~~~l~~~~~~~~~eRKv~A~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~p~i~~~~~l~   85 (305)
T MTH00225          9 IMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLI   85 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCccccCccHHHHHHHHHcCCcccccchHHHHHHHHHHHHHHHHH
Confidence            33455677899999999999999999999999999999999999999999999999999999999999998877653

>MTH00193 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=3e-24  Score=167.65  Aligned_cols=80  Identities=58%  Similarity=0.821  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231         20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL   99 (101)
Q Consensus        20 ~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l   99 (101)
                      ++.+++++.+..+++++++.|||++|++|+|+|||++|++|++||++|+.||+.||.+.|+++|+++|..+|++.+.+++
T Consensus         6 ~~~l~~l~~~~~~~~~~~~~eRKv~A~~Q~R~GP~~~g~~GilQ~~~D~~KLl~Ke~i~p~~~~~~~f~~~p~l~~~~~l   85 (306)
T MTH00193          6 INFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSL   85 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCcccccchHhHHHHHHHcCCcCcccccHHHHHHHHHHHHHHHH
Confidence            33444444566679999999999999999999999999999999999999999999999999999999999999988765

>COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]

Probab=99.91  E-value=2.2e-24  Score=169.99  Aligned_cols=89  Identities=31%  Similarity=0.414  Sum_probs=80.5

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHH
Q psy15231         12 DRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTP   91 (101)
Q Consensus        12 ~~~~~~~~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP   91 (101)
                      |....+.....+++++.++..+++.+|+|||+.|++|+|.|||+||++|++|++||++|++.||+++|+++|+++|.++|
T Consensus         8 ~~~l~~~~~k~i~ili~~~~~~~~~~w~ERK~~a~~Q~R~GP~~VGp~GllQ~~AD~iKl~fKE~iiP~~adk~~f~laP   87 (332)
T COG1005           8 DIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFLFTLAP   87 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCCchHHHHHHHHHHHHhcccccCCCCcchHHHHhH
Confidence            34455666666777788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q psy15231         92 LISLGVSLG  100 (101)
Q Consensus        92 ~i~~~~~ll  100 (101)
                      ++++.++++
T Consensus        88 ii~~~~a~~   96 (332)
T COG1005          88 IIALIPAFL   96 (332)
T ss_pred             HHHHHHHHH
Confidence            999988764

>MTH00143 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=3e-24  Score=167.74  Aligned_cols=77  Identities=51%  Similarity=0.852  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         24 HTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        24 ~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      +.++.++++++++++.|||++|++|+|+|||++|++|++||++|++||++||.+.|+++|+++|..+|++.+..++.
T Consensus         9 ~~~~~~~~~~~~~~~~eRKv~A~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~l~   85 (307)
T MTH00143          9 FTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALL   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCccHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHHHHH
Confidence            33445667899999999999999999999999999999999999999999999999999999999999999887653

>KOG4770|consensus

Probab=99.91  E-value=1.5e-24  Score=167.76  Aligned_cols=81  Identities=47%  Similarity=0.654  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231         20 ESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL   99 (101)
Q Consensus        20 ~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l   99 (101)
                      ...+..+++++.+++|+++.|||+.|++|+|+|||+||++|++||++|+.||+.||+..|.++|...|.++|.+++.+++
T Consensus         7 ~~illlii~il~~vafl~l~ERkilg~iQ~RkGP~~vg~~GllQplaDg~KL~~KE~l~P~~sn~~lf~i~P~~s~~~~l   86 (315)
T KOG4770|consen    7 AMILLLIIPILQSVAFLTLLERKILGYIQNRKGPNKVGPMGLLQPLADGVKLLTKEQLTPLNSNEVLFLIAPGISFVLSL   86 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHhcCCCCCCcCCceeeeeccHHHHHHHH
Confidence            34456688999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             c
Q psy15231        100 G  100 (101)
Q Consensus       100 l  100 (101)
                      +
T Consensus        87 l   87 (315)
T KOG4770|consen   87 L   87 (315)
T ss_pred             H
Confidence            4

>MTH00216 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=3.5e-24  Score=168.58  Aligned_cols=82  Identities=44%  Similarity=0.665  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHh
Q psy15231         19 TESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS   98 (101)
Q Consensus        19 ~~~~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~   98 (101)
                      ..+.+++++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||+.||.+.|+++|+++|..+|++.+.++
T Consensus         9 ~~~~l~~l~~~~~~~~~~~l~eRKi~a~iQ~R~GP~~~g~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~   88 (327)
T MTH00216          9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA   88 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCccccchhHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHH
Confidence            33334344556677999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             hc
Q psy15231         99 LG  100 (101)
Q Consensus        99 ll  100 (101)
                      +.
T Consensus        89 l~   90 (327)
T MTH00216         89 LI   90 (327)
T ss_pred             HH
Confidence            53

>MTH00104 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.91  E-value=3.3e-24  Score=168.19  Aligned_cols=76  Identities=47%  Similarity=0.742  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231         24 HTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL   99 (101)
Q Consensus        24 ~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l   99 (101)
                      ++++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||++||.+.|+++|+.+|..+|++.++.++
T Consensus         8 ~~~~~~~~~~~f~~~~eRKv~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~~   83 (318)
T MTH00104          8 LLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLAL   83 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCccccchHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHH
Confidence            3345566789999999999999999999999999999999999999999999999999998899999999887765

>MTH00090 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.90  E-value=2.5e-24  Score=166.74  Aligned_cols=76  Identities=36%  Similarity=0.530  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      .++.++++++++++.|||++|++|+|+||||+|++|++||++|+.||+.||.+.|+++|+.+|..+|++.++.++.
T Consensus         5 ~~~~~~~~~~~~~l~eRKv~a~~Q~R~GP~~vg~~GilQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~~~~~l~   80 (284)
T MTH00090          5 MMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL   80 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCccccHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence            3455566789999999999999999999999999999999999999999999999999999999999998877653

>CHL00032 ndhA NADH dehydrogenase subunit 1

Probab=99.90  E-value=5.1e-24  Score=170.12  Aligned_cols=78  Identities=29%  Similarity=0.364  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         23 THTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        23 l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      +++++.++++++++++.|||++|++|+|+||||+|+.|++||++|+.||++||.+.|+++|.++|..+|++.++.+++
T Consensus        34 l~~~~~~~~~vaf~~l~ERKi~A~~Q~R~GP~~vg~~GilQp~~D~~KLl~KE~i~p~~~~~~lf~~~P~i~~~~~l~  111 (363)
T CHL00032         34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILL  111 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCccccccHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            333455667799999999999999999999999999999999999999999999999999999999999998887653

>PRK06076 NADH:ubiquinone oxidoreductase subunit H; Provisional

Probab=99.90  E-value=4.8e-24  Score=167.37  Aligned_cols=75  Identities=37%  Similarity=0.539  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhh
Q psy15231         25 TTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSL   99 (101)
Q Consensus        25 ~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~l   99 (101)
                      .++.+++++++++++|||++||+|+|+||||+|+.|++||++|++||+.||.+.|+++|.++|..+|++.+..++
T Consensus        19 ~l~~~l~~~~f~~l~eRKv~ar~Q~R~GP~~v~~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~l~l~~~~   93 (322)
T PRK06076         19 ILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAF   93 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCCcccccchhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence            344566779999999999999999999999999999999999999999999999999999999999999888765

>MTH00010 ND1 NADH dehydrogenase subunit 1; Validated

Probab=99.90  E-value=4.6e-24  Score=167.03  Aligned_cols=79  Identities=48%  Similarity=0.659  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         22 RTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        22 ~l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      .++.++.++++++++++.|||++|++|+|+|||++|+.|++||++|+.||++||.+.|+++|+..|..+|++.++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~eRKv~A~~Q~R~GP~~~g~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~i~~~~~l~   87 (311)
T MTH00010          9 ILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALL   87 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCccCCcccchHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHH
Confidence            3455667777899999999999999999999999999999999999999999999999999988899999999887654

>MTH00054 ND1 NADH dehydrogenase subunit 1; Provisional

Probab=99.90  E-value=6e-24  Score=167.17  Aligned_cols=75  Identities=45%  Similarity=0.740  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHhhc
Q psy15231         26 TTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVSLG  100 (101)
Q Consensus        26 ~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~ll  100 (101)
                      ++.++++++++++.|||++|++|+|+|||++|+.|++||++|++||+.||.+.|+++|+++|..+|++.+.+++.
T Consensus        12 ~~~~~~~~~~~~l~ERKi~a~iQ~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~lf~~~P~l~~~~~l~   86 (324)
T MTH00054         12 LVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFI   86 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCCcccccchhhHHHHHHHcCCcCccchhHHHHHHHHHHHHHHHHH
Confidence            444567799999999999999999999999999999999999999999999999999999999999999887653

>COG0650 HyfC Formate hydrogenlyase subunit 4 [Energy production and conversion]

Probab=99.74  E-value=7.2e-18  Score=132.57  Aligned_cols=69  Identities=33%  Similarity=0.486  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCccccchhHHHHHHHhhccccccccccchhHhHHHHHHHHHh
Q psy15231         23 THTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAIKLYTKEFFIPLKSNDYPYWVTPLISLGVS   98 (101)
Q Consensus        23 l~~~i~vl~~~~fl~~~eRKv~a~~Q~R~GP~~vg~~GllQ~~aD~lKLl~KE~i~p~~s~~~~f~~aP~i~~~~~   98 (101)
                      +...+.+.+.+|++.+++||++||+|+|+||      +++||+.|.+|++.||.+.|+++. ++|+.+|++.+...
T Consensus        11 l~~~~~a~lv~pl~~GI~RKv~ARiq~R~GP------pi~Qp~~d~lKll~Ke~v~P~~s~-~lf~~~P~~~~g~~   79 (309)
T COG0650          11 LLQLIIAFLVAPLLSGITRKVRARIQRRIGP------PILQPYYDTLKLLGKETVIPASSG-WLFRLAPYLALGTL   79 (309)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC------CcchHHHHHHHHhccccccCCCch-HHHHHHHHHHHHHH
Confidence            3345566788999999999999999999999      599999999999999999999988 89999999988744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
4he8_H	365	Crystal Structure Of The Membrane Domain Of Respira		2e-09

>pdb|4HE8|H Chain H, Crystal Structure Of The Membrane Domain Of Respiratory Complex I From Thermus Thermophilus Length = 365

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 10 PVDRNAMSGTESRTHTTTCEHSGVAFLTLLERKVLSFIQLRKGPNKRGVIGIFQPFSDAI 69
          PVD   M   ++         +  AF+TL+ER++L+  Q+R GPN+ G  G+ QP +DAI
Sbjct: 6  PVDPYWMVALKALL-VVVGLLTAFAFMTLIERRLLARFQVRMGPNRVGPFGLLQPLADAI 64
Query: 70 KLYTKEFFIPLKSNDYPYWVTPLISLGVSL 99
          K   KE  +  +++ + + + PLIS+  +L
Sbjct: 65 KSIFKEDIVVAQADRFLFVLAPLISVVFAL 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00