Psyllid ID: psy15255
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 199 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BKC5 | 1097 | Importin-5 OS=Mus musculu | yes | N/A | 0.854 | 0.154 | 0.401 | 5e-28 | |
| O00410 | 1097 | Importin-5 OS=Homo sapien | yes | N/A | 0.854 | 0.154 | 0.395 | 9e-28 | |
| Q8BIV3 | 1105 | Ran-binding protein 6 OS= | no | N/A | 0.683 | 0.123 | 0.315 | 6e-19 | |
| O60518 | 1105 | Ran-binding protein 6 OS= | no | N/A | 0.678 | 0.122 | 0.362 | 8e-18 | |
| O74476 | 1095 | Importin subunit beta-3 O | yes | N/A | 0.407 | 0.073 | 0.325 | 4e-08 | |
| P32337 | 1089 | Importin subunit beta-3 O | yes | N/A | 0.261 | 0.047 | 0.421 | 0.0004 |
| >sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGRSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+KICD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCM 181
|
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A (By similarity). In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. Mus musculus (taxid: 10090) |
| >sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+K+CD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCM 181
|
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev. Homo sapiens (taxid: 9606) |
| >sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 48/184 (26%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNI 60
++ +++ E RQM+A LLR++ S+ F E+Y
Sbjct: 54 LDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYP-------------------------- 87
Query: 61 RRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120
NL PE +Q ++K ++IL ++ + ++R+K+CD A +A
Sbjct: 88 ---------------------NLPPE-VQRDVKIELILAVKLETHASMRKKLCDIFAVLA 125
Query: 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180
RNLID++G N WPE L+FL +S N L E AL +F P IFGNQ+ L +IK++L
Sbjct: 126 RNLIDESGTNHWPEGLKFLIDSIHSKNVVLWEVALHVFWHFPGIFGNQDRHDLDIIKRLL 185
Query: 181 QQCL 184
QC+
Sbjct: 186 DQCI 189
|
May function in nuclear protein import as nuclear transport receptor. Mus musculus (taxid: 10090) |
| >sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 50 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDND 106
LL N ++ AA + R L+ ++P +Q ++K ++IL ++ +
Sbjct: 52 FLLDAVRNRRAGYEVRQMAAALLRRLLSSGFEEVYPNLPADVQRDVKIELILAVKLETHA 111
Query: 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166
++R+K+CD A +ARNLID+ G N WPE L+FL S N L E AL +F P IFG
Sbjct: 112 SMRKKLCDIFAVLARNLIDEDGTNHWPEGLKFLIDSIYSKNVVLWEVALHVFWHFPGIFG 171
Query: 167 NQESTYLVVIKQMLQQCL 184
QE L +IK++L QC+
Sbjct: 172 TQERHDLDIIKRLLDQCI 189
|
May function in nuclear protein import as nuclear transport receptor. Homo sapiens (taxid: 9606) |
| >sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT 148
+ +L+SQ++ +R K+CD AE+AR++ D G WPE + +F NS +
Sbjct: 96 KQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQGE--WPELINVIFNAVNSPDE 153
Query: 149 TLKESALRLFTSVPEIFGNQEST 171
+ +ES R TS+P + Q+S
Sbjct: 154 SFRESVFRTITSLPRLLSGQDSA 176
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Involved in the nuclear import of cdc25 and mcs1. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P32337|IMB3_YEAST Importin subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSE1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162
D+IR K+ DA AE + DD WPE LQ L + S N +ES+ R+ T+VP
Sbjct: 116 DSIRHKLSDAIAECVQ---DDLPA--WPELLQALIESLKSGNPNFRESSFRILTTVP 167
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Plays a role in protein secretion. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 199 | ||||||
| 91084051 | 1106 | PREDICTED: similar to importin beta-3 [T | 0.728 | 0.131 | 0.430 | 4e-35 | |
| 307187370 | 1119 | Importin-5 [Camponotus floridanus] | 0.844 | 0.150 | 0.475 | 9e-34 | |
| 332027053 | 1096 | Importin-5 [Acromyrmex echinatior] | 0.844 | 0.153 | 0.475 | 2e-33 | |
| 307196332 | 1096 | Importin-5 [Harpegnathos saltator] | 0.758 | 0.137 | 0.5 | 8e-33 | |
| 322795803 | 410 | hypothetical protein SINV_12652 [Solenop | 0.844 | 0.409 | 0.464 | 1e-32 | |
| 242005580 | 1105 | Importin beta-3, putative [Pediculus hum | 0.663 | 0.119 | 0.416 | 5e-32 | |
| 383864135 | 1093 | PREDICTED: importin-5 [Megachile rotunda | 0.844 | 0.153 | 0.459 | 6e-32 | |
| 380025547 | 1109 | PREDICTED: importin-5 [Apis florea] | 0.763 | 0.137 | 0.490 | 2e-31 | |
| 350421036 | 1110 | PREDICTED: importin-5-like [Bombus impat | 0.788 | 0.141 | 0.463 | 2e-31 | |
| 340727447 | 1110 | PREDICTED: importin-5-like [Bombus terre | 0.864 | 0.154 | 0.458 | 3e-31 |
| >gi|91084051|ref|XP_967428.1| PREDICTED: similar to importin beta-3 [Tribolium castaneum] gi|270006692|gb|EFA03140.1| hypothetical protein TcasGA2_TC013052 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 106/193 (54%), Gaps = 48/193 (24%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNI 60
+ I +AG E RQMSAVLLR++F+ DF+E + KL
Sbjct: 43 LGAIHNAGLGDEARQMSAVLLRRLFANDFLEFFPKL------------------------ 78
Query: 61 RRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120
P Q LK Q++L +Q + +R K+C+ AAEVA
Sbjct: 79 ------------------------PPASQAQLKEQVLLAIQQDQTEQLRHKVCEVAAEVA 114
Query: 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180
RNLIDD GNN WPEFLQFLFQCAN+ N LKE+AL++FTSVP +FGNQ++ YL +IKQML
Sbjct: 115 RNLIDDDGNNQWPEFLQFLFQCANAPNNVLKEAALQMFTSVPGVFGNQQNNYLDLIKQML 174
Query: 181 QQCLLPPNPYSVQ 193
Q L P Y V+
Sbjct: 175 MQSLAPTEAYEVR 187
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187370|gb|EFN72493.1| Importin-5 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 111/183 (60%), Gaps = 15/183 (8%)
Query: 20 LLRKIFSTD------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73
LL + STD E Y L V +S++ LL T N + ++ AA + R
Sbjct: 33 LLNTLLSTDNDARTQAEEAYGNLPV------ESKVTFLLTTICNGTLAEELRSMAAVLLR 86
Query: 74 NLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 130
L + +P+ Q LK QI+L +QT D IRRK+C+ AAE+ARNLID+ GNN
Sbjct: 87 RLFASEFMDFYPKIPPEAQVQLKEQILLSVQTEQTDTIRRKVCEVAAEIARNLIDEDGNN 146
Query: 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190
WPEFLQFLFQCANS LKESALR+FTSVP +FGNQ++ YL +IKQMLQQ +L Y
Sbjct: 147 QWPEFLQFLFQCANSPLPALKESALRMFTSVPGVFGNQQTNYLDLIKQMLQQSVLDAANY 206
Query: 191 SVQ 193
V+
Sbjct: 207 EVR 209
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332027053|gb|EGI67149.1| Importin-5 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 111/183 (60%), Gaps = 15/183 (8%)
Query: 20 LLRKIFSTD------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73
LL + STD E Y L V +S++ LL T N + ++ AA + R
Sbjct: 11 LLNTLLSTDNDVRTQAEEAYGNLPV------ESKVTFLLTTICNGTLAEEMRTIAAVLLR 64
Query: 74 NLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 130
L + +P+ Q LK QI+L +Q +NIRRK+CD AAEVARNLID+ GNN
Sbjct: 65 RLFSSEFMDFYPKIPPEAQAQLKEQILLSVQNEQTENIRRKVCDVAAEVARNLIDEDGNN 124
Query: 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190
WPEFLQFLFQCANS LKESALR+FTSVP +FGNQ++ +L +IKQMLQQ +L Y
Sbjct: 125 QWPEFLQFLFQCANSPLPALKESALRMFTSVPGVFGNQQANHLDLIKQMLQQSVLDMTNY 184
Query: 191 SVQ 193
V+
Sbjct: 185 EVR 187
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307196332|gb|EFN77942.1| Importin-5 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 3/154 (1%)
Query: 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILL 99
+L+S++ LL T N + ++ AA + R L + +P+ Q LK QI+L
Sbjct: 34 SLESKVTYLLSTVCNGTLVDEMRSMAAVLLRRLFASEFMDFFPKIPSEAQAQLKEQILLS 93
Query: 100 LQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFT 159
+Q + IRRK+C+ AAEVARNLID+ GNN WPEFLQFLFQCANS + LKESALR+FT
Sbjct: 94 VQNEQKETIRRKVCEVAAEVARNLIDEDGNNQWPEFLQFLFQCANSPSPELKESALRMFT 153
Query: 160 SVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193
SVP +FGNQ++ YL +IKQMLQQ ++ Y V+
Sbjct: 154 SVPGVFGNQQTNYLDLIKQMLQQAVVDITNYEVR 187
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322795803|gb|EFZ18482.1| hypothetical protein SINV_12652 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 109/183 (59%), Gaps = 15/183 (8%)
Query: 20 LLRKIFSTD------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73
LL + STD E Y L V +S++ LL T N + + AA + R
Sbjct: 11 LLNTLLSTDNDVRTQAEEAYGNLPV------ESKVTYLLTTVCNGTLAEDMRTIAAVLLR 64
Query: 74 NLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 130
L + +P+ Q LK QI+L +Q + IRRK+CD AAEVARNLID+ GNN
Sbjct: 65 RLFSSEFMDFYPKIPPEAQGQLKEQILLSVQNEQTEAIRRKVCDVAAEVARNLIDEDGNN 124
Query: 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190
WPEFLQFLFQCANS LKESALR+FTSVP +FGNQ++ +L +IKQMLQQ ++ Y
Sbjct: 125 QWPEFLQFLFQCANSPLPALKESALRMFTSVPGVFGNQQANHLELIKQMLQQSVMDMANY 184
Query: 191 SVQ 193
V+
Sbjct: 185 EVR 187
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242005580|ref|XP_002423642.1| Importin beta-3, putative [Pediculus humanus corporis] gi|212506802|gb|EEB10904.1| Importin beta-3, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 109/180 (60%), Gaps = 48/180 (26%)
Query: 14 RQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73
+QMS++LLR++FS +F ++ KL+
Sbjct: 55 KQMSSILLRRLFSNEFADLQLKLS------------------------------------ 78
Query: 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP 133
PE L++ +K+Q+++ +Q ++++R+++CD AAE+ARNLID GNN WP
Sbjct: 79 -----------PENLEH-IKTQVLMGVQAEQSESLRKRMCDIAAELARNLIDQDGNNQWP 126
Query: 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193
+FLQFLFQCANS + +LK+SALR+F SVP +FGNQES YL VI+QML+Q LLP PY V+
Sbjct: 127 QFLQFLFQCANSPSASLKDSALRMFASVPSVFGNQESNYLDVIRQMLEQSLLPTQPYEVR 186
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383864135|ref|XP_003707535.1| PREDICTED: importin-5 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 20 LLRKIFSTD------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73
LL + STD E Y+ L V+ S++ LL N + ++ AA + R
Sbjct: 11 LLHTLISTDNDARTQAEEAYNNLPVD------SKVTFLLALLCNATLSEEMRAMAAVLLR 64
Query: 74 NLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 130
L + +P+ Q LK QI+L +Q IRRK+C+ AAEVARNLID+ GNN
Sbjct: 65 RLFSSEFMDFYPKIPPEAQAQLKEQILLSVQNEQTKTIRRKVCEVAAEVARNLIDEDGNN 124
Query: 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190
WPEFLQFLFQCANS LKESALR+FTSVP +FGNQ++ YL +IKQMLQQ ++ + Y
Sbjct: 125 QWPEFLQFLFQCANSPLPALKESALRMFTSVPGVFGNQQANYLDLIKQMLQQSVMDSSNY 184
Query: 191 SVQ 193
V+
Sbjct: 185 EVR 187
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380025547|ref|XP_003696532.1| PREDICTED: importin-5 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 42 NNLK--SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQI 96
NNL S++ LL + N + ++ AA + R L + +P+ Q LK QI
Sbjct: 43 NNLPVDSKVTFLLTSLCNATLTEEMRAMAAVLLRRLFSSEFMDFYPKIPPEAQAQLKEQI 102
Query: 97 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156
+L +Q + IRRK+C+ AAEVARNLID+ GNN WPEFLQFLFQCANS LKE+ALR
Sbjct: 103 LLSVQNEQTETIRRKVCEVAAEVARNLIDEDGNNQWPEFLQFLFQCANSPVPALKENALR 162
Query: 157 LFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193
+FTSVP +FGNQ++ YL +IKQMLQQ ++ Y V+
Sbjct: 163 MFTSVPGVFGNQQANYLNLIKQMLQQSIMDSANYEVR 199
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350421036|ref|XP_003492709.1| PREDICTED: importin-5-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 106/166 (63%), Gaps = 9/166 (5%)
Query: 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--- 87
E Y+ L V+ S++ LL + N + ++ AA + R L + +P+
Sbjct: 41 EAYNNLPVD------SKVTFLLSSLCNATLTEEMRAMAAVLLRRLFASEFMDFYPKIPPE 94
Query: 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDN 147
Q L+ QI+L +Q+ + IRRK+C+ AAEVARNLID+ GNN WPEFLQFLFQCANS
Sbjct: 95 AQAQLREQILLSVQSEQTETIRRKVCEVAAEVARNLIDEDGNNQWPEFLQFLFQCANSPV 154
Query: 148 TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193
LKE+ALR+FTSVP +FGNQ++ YL +IKQMLQQ ++ Y V+
Sbjct: 155 PALKENALRMFTSVPGVFGNQQANYLDLIKQMLQQSIMDSANYEVR 200
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340727447|ref|XP_003402055.1| PREDICTED: importin-5-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 20 LLRKIFSTDFIEIYSKLAVNDQNNLK--SQIILLLQTCDNDNIRRKICDAAAEVARNLID 77
LL + STD K A NNL S++ LL N + ++ AA + R L
Sbjct: 24 LLNTLLSTD--NDTRKQAEEAYNNLPVDSKVTFLLSALCNATLTEEMRAMAAVLLRRLFS 81
Query: 78 DAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE 134
+ +P+ Q L+ QI+L +Q+ + IRRK+C+ AAEVARNLID+ GNN WPE
Sbjct: 82 SEFMDFYPKIPPEAQAQLREQILLSVQSEQTETIRRKVCEVAAEVARNLIDEDGNNQWPE 141
Query: 135 FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193
FLQFLFQCANS LKE+ALR+F SVP +FGNQ++ YL +IKQMLQQ ++ Y V+
Sbjct: 142 FLQFLFQCANSPVPALKENALRMFASVPGVFGNQQANYLDLIKQMLQQSIMDSENYEVR 200
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 199 | ||||||
| UNIPROTKB|Q3B7N3 | 422 | RANBP6 "RAN binding protein 6" | 0.924 | 0.436 | 0.382 | 1.5e-28 | |
| MGI|MGI:1917822 | 1097 | Ipo5 "importin 5" [Mus musculu | 0.924 | 0.167 | 0.382 | 1.4e-27 | |
| RGD|1308715 | 1097 | Ipo5 "importin 5" [Rattus norv | 0.924 | 0.167 | 0.382 | 1.4e-27 | |
| UNIPROTKB|O00410 | 1097 | IPO5 "Importin-5" [Homo sapien | 0.924 | 0.167 | 0.376 | 1.8e-27 | |
| UNIPROTKB|F1MPE5 | 1110 | IPO5 "Uncharacterized protein" | 0.924 | 0.165 | 0.382 | 3e-27 | |
| UNIPROTKB|H0Y3V4 | 182 | IPO5 "Importin-5" [Homo sapien | 0.773 | 0.846 | 0.409 | 5.7e-27 | |
| UNIPROTKB|C9JMV5 | 165 | IPO5 "Importin-5" [Homo sapien | 0.703 | 0.848 | 0.426 | 9.4e-27 | |
| UNIPROTKB|F1RP44 | 1067 | IPO5 "Uncharacterized protein" | 0.773 | 0.144 | 0.407 | 6.9e-26 | |
| UNIPROTKB|E2RF06 | 1089 | IPO5 "Uncharacterized protein" | 0.773 | 0.141 | 0.407 | 7.1e-26 | |
| UNIPROTKB|H0Y8C6 | 1099 | IPO5 "Importin-5" [Homo sapien | 0.773 | 0.140 | 0.401 | 7.3e-26 |
| UNIPROTKB|Q3B7N3 RANBP6 "RAN binding protein 6" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 73/191 (38%), Positives = 111/191 (58%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGQSKITFLLQAIRNTAAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+KICD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPTLPTDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQ 184
Query: 188 NPYSVQALQLK 198
S++ L +
Sbjct: 185 EHPSIRTLSAR 195
|
|
| MGI|MGI:1917822 Ipo5 "importin 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 73/191 (38%), Positives = 111/191 (58%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGRSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+KICD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQ 184
Query: 188 NPYSVQALQLK 198
S++ L +
Sbjct: 185 EHPSIRTLSAR 195
|
|
| RGD|1308715 Ipo5 "importin 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 321 (118.1 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 73/191 (38%), Positives = 111/191 (58%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGRSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+KICD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQ 184
Query: 188 NPYSVQALQLK 198
S++ L +
Sbjct: 185 EHPSIRTLSAR 195
|
|
| UNIPROTKB|O00410 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 72/191 (37%), Positives = 111/191 (58%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 7 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAV 64
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+K+CD AAE+ARNLID+
Sbjct: 65 LLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDED 124
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 125 GNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQ 184
Query: 188 NPYSVQALQLK 198
S++ L +
Sbjct: 185 EHPSIRTLSAR 195
|
|
| UNIPROTKB|F1MPE5 IPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 3.0e-27, P = 3.0e-27
Identities = 73/191 (38%), Positives = 111/191 (58%)
Query: 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL--KSQIILLLQTCDNDNIRRKICDAAAE 70
E+Q +LL + S D + K A N+ +S+I LLQ N + AA
Sbjct: 15 EQQQFYLLLGNLLSPD--NVVRKQAEETYENIPGQSKITFLLQAIRNTAAAEEARQMAAV 72
Query: 71 VARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127
+ R L+ A + ++P +Q +KS++++++Q ++R+KICD AAE+ARNLID+
Sbjct: 73 LLRRLLSSAFDEVYPTLPTDVQTAIKSELLMIIQMETQSSMRKKICDIAAELARNLIDED 132
Query: 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187
GNN WPE L+FLF +S N L+E+AL +F + P IFGNQ+ YL VIK+ML QC+
Sbjct: 133 GNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQ 192
Query: 188 NPYSVQALQLK 198
S++ L +
Sbjct: 193 EHPSIRTLSAR 203
|
|
| UNIPROTKB|H0Y3V4 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 66/161 (40%), Positives = 100/161 (62%)
Query: 45 KSQIILLL-QTCDNDNIRRKICDA---AAEVARNLIDDAGNNLWPEF---LQNNLKSQII 97
+ Q LLL DN+ RK +A AA + R L+ A + ++P +Q +KS+++
Sbjct: 6 QQQFYLLLGNLLSPDNVVRKQAEARQMAAVLLRRLLSSAFDEVYPALPSDVQTAIKSELL 65
Query: 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRL 157
+++Q ++R+K+CD AAE+ARNLID+ GNN WPE L+FLF +S N L+E+AL +
Sbjct: 66 MIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHI 125
Query: 158 FTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198
F + P IFGNQ+ YL VIK+ML QC+ S++ L +
Sbjct: 126 FWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSAR 166
|
|
| UNIPROTKB|C9JMV5 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 61/143 (42%), Positives = 92/143 (64%)
Query: 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQ 101
+S+I LLQ N + AA + R L+ A + ++P +Q +KS++++++Q
Sbjct: 20 QSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQ 79
Query: 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161
++R+K+CD AAE+ARNLID+ GNN WPE L+FLF +S N L+E+AL +F +
Sbjct: 80 METQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNF 139
Query: 162 PEIFGNQESTYLVVIKQMLQQCL 184
P IFGNQ+ YL VIK+ML QC+
Sbjct: 140 PGIFGNQQQHYLDVIKRMLVQCM 162
|
|
| UNIPROTKB|F1RP44 IPO5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 6.9e-26, P = 6.9e-26
Identities = 64/157 (40%), Positives = 97/157 (61%)
Query: 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQ 101
+S+I LLQ N + AA + R L+ A + ++P +Q +KS++++++Q
Sbjct: 9 QSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPTLPTDVQTAIKSELLMIIQ 68
Query: 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161
++R+KICD AAE+ARNLID+ GNN WPE L+FLF +S N L+E+AL +F +
Sbjct: 69 METQSSMRKKICDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNF 128
Query: 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198
P IFGNQ+ YL VIK+ML QC+ S++ L +
Sbjct: 129 PGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSAR 165
|
|
| UNIPROTKB|E2RF06 IPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 7.1e-26, P = 7.1e-26
Identities = 64/157 (40%), Positives = 97/157 (61%)
Query: 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQ 101
+S+I LLQ N + AA + R L+ A + ++P +Q +KS++++++Q
Sbjct: 29 QSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPTLPSDVQTAIKSELLMIIQ 88
Query: 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161
++R+KICD AAE+ARNLID+ GNN WPE L+FLF +S N L+E+AL +F +
Sbjct: 89 METQSSMRKKICDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNMGLREAALHIFWNF 148
Query: 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198
P IFGNQ+ YL VIK+ML QC+ S++ L +
Sbjct: 149 PGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSAR 185
|
|
| UNIPROTKB|H0Y8C6 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 7.3e-26, P = 7.3e-26
Identities = 63/157 (40%), Positives = 97/157 (61%)
Query: 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQ 101
+S+I LLQ N + AA + R L+ A + ++P +Q +KS++++++Q
Sbjct: 41 QSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQ 100
Query: 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161
++R+K+CD AAE+ARNLID+ GNN WPE L+FLF +S N L+E+AL +F +
Sbjct: 101 METQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNF 160
Query: 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198
P IFGNQ+ YL VIK+ML QC+ S++ L +
Sbjct: 161 PGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSAR 197
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
No hit with e-value below 0.005
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 199 | |||
| KOG2171|consensus | 1075 | 99.92 | ||
| KOG2023|consensus | 885 | 99.92 | ||
| KOG1241|consensus | 859 | 99.82 | ||
| KOG2171|consensus | 1075 | 99.8 | ||
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.71 | |
| KOG1241|consensus | 859 | 99.31 | ||
| KOG2023|consensus | 885 | 99.11 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 99.05 | |
| KOG2274|consensus | 1005 | 99.03 | ||
| KOG1992|consensus | 960 | 98.81 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.81 | |
| PF03810 | 77 | IBN_N: Importin-beta N-terminal domain; InterPro: | 98.68 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.62 | |
| KOG1993|consensus | 978 | 98.59 | ||
| PRK09687 | 280 | putative lyase; Provisional | 98.52 | |
| KOG1991|consensus | 1010 | 98.5 | ||
| PRK09687 | 280 | putative lyase; Provisional | 98.39 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.24 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 98.22 | |
| KOG0211|consensus | 759 | 98.16 | ||
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.13 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 98.11 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 98.09 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.06 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 98.05 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 98.04 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.98 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 97.98 | |
| KOG1824|consensus | 1233 | 97.94 | ||
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.92 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.9 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.89 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.85 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 97.85 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.84 | |
| KOG1240|consensus | 1431 | 97.8 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.79 | |
| KOG1242|consensus | 569 | 97.78 | ||
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.77 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.77 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.76 | |
| KOG2956|consensus | 516 | 97.76 | ||
| KOG0213|consensus | 1172 | 97.71 | ||
| KOG0166|consensus | 514 | 97.71 | ||
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 97.66 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.66 | |
| KOG2274|consensus | 1005 | 97.54 | ||
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 97.5 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.5 | |
| KOG1967|consensus | 1030 | 97.49 | ||
| KOG0211|consensus | 759 | 97.46 | ||
| KOG1248|consensus | 1176 | 97.42 | ||
| KOG1967|consensus | 1030 | 97.32 | ||
| KOG1943|consensus | 1133 | 97.24 | ||
| KOG1824|consensus | 1233 | 97.24 | ||
| PF04510 | 174 | DUF577: Family of unknown function (DUF577); Inter | 97.21 | |
| KOG1059|consensus | 877 | 97.21 | ||
| KOG0166|consensus | 514 | 97.16 | ||
| PF04510 | 174 | DUF577: Family of unknown function (DUF577); Inter | 97.14 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.13 | |
| KOG0212|consensus | 675 | 97.13 | ||
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 97.13 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.1 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 97.08 | |
| KOG0213|consensus | 1172 | 97.06 | ||
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.03 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.03 | |
| KOG1060|consensus | 968 | 97.0 | ||
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.91 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 96.91 | |
| KOG1949|consensus | 1005 | 96.91 | ||
| KOG1242|consensus | 569 | 96.84 | ||
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 96.8 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 96.77 | |
| KOG1020|consensus | 1692 | 96.7 | ||
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 96.68 | |
| KOG4653|consensus | 982 | 96.6 | ||
| KOG2160|consensus | 342 | 96.53 | ||
| KOG1020|consensus | 1692 | 96.44 | ||
| KOG1062|consensus | 866 | 96.41 | ||
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 96.38 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 96.37 | |
| KOG2032|consensus | 533 | 96.33 | ||
| KOG2032|consensus | 533 | 96.33 | ||
| KOG2956|consensus | 516 | 96.31 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.23 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.11 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 96.06 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.05 | |
| KOG0915|consensus | 1702 | 96.04 | ||
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 95.96 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 95.96 | |
| KOG0212|consensus | 675 | 95.91 | ||
| KOG1243|consensus | 690 | 95.69 | ||
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.66 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.62 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 95.57 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 95.54 | |
| KOG1820|consensus | 815 | 95.45 | ||
| KOG1077|consensus | 938 | 95.45 | ||
| PF09324 | 86 | DUF1981: Domain of unknown function (DUF1981); Int | 95.44 | |
| KOG2025|consensus | 892 | 95.44 | ||
| KOG0567|consensus | 289 | 95.41 | ||
| KOG2160|consensus | 342 | 95.37 | ||
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 95.16 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.11 | |
| KOG2933|consensus | 334 | 95.08 | ||
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 95.08 | |
| KOG0392|consensus | 1549 | 95.02 | ||
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 94.94 | |
| KOG2062|consensus | 929 | 94.75 | ||
| KOG1240|consensus | 1431 | 94.75 | ||
| KOG1061|consensus | 734 | 94.64 | ||
| KOG1248|consensus | 1176 | 94.55 | ||
| KOG1949|consensus | 1005 | 94.54 | ||
| KOG2025|consensus | 892 | 94.48 | ||
| KOG2149|consensus | 393 | 94.48 | ||
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 94.47 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 94.45 | |
| KOG1991|consensus | 1010 | 94.44 | ||
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 94.42 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 94.41 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 94.38 | |
| KOG0567|consensus | 289 | 94.36 | ||
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.36 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 94.27 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 94.15 | |
| KOG1837|consensus | 1621 | 94.12 | ||
| KOG0915|consensus | 1702 | 94.05 | ||
| KOG1992|consensus | 960 | 94.02 | ||
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.96 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 93.96 | |
| KOG1993|consensus | 978 | 93.91 | ||
| KOG2020|consensus | 1041 | 93.89 | ||
| KOG2021|consensus | 980 | 93.77 | ||
| KOG1517|consensus | 1387 | 93.65 | ||
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 93.58 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 93.55 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 93.48 | |
| KOG4413|consensus | 524 | 93.41 | ||
| KOG0414|consensus | 1251 | 93.37 | ||
| PF12765 | 42 | Cohesin_HEAT: HEAT repeat associated with sister c | 93.28 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.17 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 93.03 | |
| KOG1060|consensus | 968 | 93.02 | ||
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 92.94 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 92.86 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 92.77 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.68 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 92.53 | |
| KOG1062|consensus | 866 | 92.51 | ||
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 92.36 | |
| KOG4224|consensus | 550 | 92.34 | ||
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 92.28 | |
| KOG0392|consensus | 1549 | 92.27 | ||
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 92.12 | |
| KOG1243|consensus | 690 | 91.9 | ||
| KOG0168|consensus | 1051 | 91.89 | ||
| KOG2062|consensus | 929 | 91.53 | ||
| KOG4653|consensus | 982 | 91.41 | ||
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 91.4 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 91.4 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 91.34 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 91.01 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 90.77 | |
| KOG0803|consensus | 1312 | 90.47 | ||
| KOG1820|consensus | 815 | 90.13 | ||
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 90.09 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 90.01 | |
| KOG2933|consensus | 334 | 89.87 | ||
| KOG4224|consensus | 550 | 89.77 | ||
| KOG2229|consensus | 616 | 89.53 | ||
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 89.26 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 89.19 | |
| KOG0414|consensus | 1251 | 89.14 | ||
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 88.85 | |
| KOG1525|consensus | 1266 | 88.58 | ||
| KOG0413|consensus | 1529 | 88.12 | ||
| PF09324 | 86 | DUF1981: Domain of unknown function (DUF1981); Int | 88.11 | |
| KOG2759|consensus | 442 | 87.94 | ||
| KOG2149|consensus | 393 | 87.89 | ||
| KOG4535|consensus | 728 | 87.44 | ||
| KOG1059|consensus | 877 | 87.44 | ||
| PF12333 | 102 | Ipi1_N: Rix1 complex component involved in 60S rib | 87.26 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 87.18 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 86.95 | |
| KOG2259|consensus | 823 | 86.63 | ||
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 86.56 | |
| PF04388 | 668 | Hamartin: Hamartin protein; InterPro: IPR007483 Th | 86.38 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 86.34 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 85.95 | |
| KOG1525|consensus | 1266 | 85.95 | ||
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 85.72 | |
| KOG2259|consensus | 823 | 85.72 | ||
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 85.24 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 85.22 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 84.65 | |
| KOG2081|consensus | 559 | 84.27 | ||
| KOG1061|consensus | 734 | 83.54 | ||
| PF07539 | 141 | DRIM: Down-regulated in metastasis; InterPro: IPR0 | 83.53 | |
| PF01465 | 46 | GRIP: GRIP domain; InterPro: IPR000237 The GRIP (g | 83.52 | |
| KOG1837|consensus | 1621 | 82.95 | ||
| PF14868 | 559 | DUF4487: Domain of unknown function (DUF4487) | 82.8 | |
| KOG2022|consensus | 982 | 82.68 | ||
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 82.68 | |
| PF07571 | 92 | DUF1546: Protein of unknown function (DUF1546); In | 82.43 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 82.01 | |
| KOG1058|consensus | 948 | 81.45 | ||
| KOG4535|consensus | 728 | 81.39 | ||
| PF07571 | 92 | DUF1546: Protein of unknown function (DUF1546); In | 81.31 | |
| KOG1943|consensus | 1133 | 80.68 | ||
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 80.46 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 80.31 |
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=193.61 Aligned_cols=178 Identities=21% Similarity=0.359 Sum_probs=148.4
Q ss_pred ccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 4 IQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 4 ~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
|.+.+.++++||+|||++||+++++ |.++++++|+.||+.+|.++..|+.+.||+++|++||+++++.++. .
T Consensus 44 i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~ 115 (1075)
T KOG2171|consen 44 ILATSADPQVRQLAAVLLRKLLTKH----WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----K 115 (1075)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHH----hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----c
Confidence 3445599999999999999999987 9999999999999999999999999999999999999999999983 9
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
||||++. |+++.. +++++.|..|..++..+...+.. ...++.+++++.|.++++|++..||.+|+++++.++.
T Consensus 116 WPell~~-----L~q~~~-S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 116 WPELLQF-----LFQSTK-SPNPSLRESALLILSSLPETFGN-TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred hHHHHHH-----HHHHhc-CCCcchhHHHHHHHHhhhhhhcc-ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 9999998 556776 78889999988888877765542 3457889999999999999977799999999999999
Q ss_pred hhh--hh-hHHHHHHHHHHH---HHhhCCCCCHHHhhhhh
Q psy15255 164 IFG--NQ-ESTYLVVIKQML---QQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~--~~-l~~~~~~l~~~l---~~~l~d~~~~~Vr~~A~ 197 (199)
+.+ +. ...+.+.+|.++ ....+++ |.+....++
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-d~~~a~~~l 227 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDG-DDDAAKSAL 227 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhcc-chHHHHHHH
Confidence 985 22 355666666554 5556665 665554443
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=185.61 Aligned_cols=183 Identities=17% Similarity=0.230 Sum_probs=159.0
Q ss_pred cccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh
Q psy15255 5 QDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 84 (199)
Q Consensus 5 ~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W 84 (199)
+-.+.++.+|++||+||||++..+ |...++++..|+|+.++++|++ +++.+|.+ +|.++....+.++...|
T Consensus 56 ~~~~~d~~~Rs~aGLlLKNnvr~~----~~~~~~~~~~yiKs~~l~~lgd-~~~lIr~t----vGivITTI~s~~~~~~w 126 (885)
T KOG2023|consen 56 RAKSEDVPTRSLAGLLLKNNVRGH----YNSIPSEVLDYIKSECLHGLGD-ASPLIRAT----VGIVITTIASTGGLQHW 126 (885)
T ss_pred cccccchhHHHHhhhhHhcccccc----ccCCChHHHHHHHHHHHhhccC-chHHHHhh----hhheeeeeecccccccc
Confidence 345678999999999999999999 9999999999999999999999 88899996 45555555566788999
Q ss_pred HHHHHHHHHH-----------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 85 PEFLQNNLKS-----------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 85 peLl~~~ik~-----------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
|+++|.++.- .+++++. ++++.+|..|..|+..+...-
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheeecC
Confidence 9999987721 2666777 889999999999998765322
Q ss_pred HhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 124 IDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+.+..+.+.++..+|++..|+++.||...|++|+.+.|..++.+.||++.|++++.+..+|+ |++|.++||+|
T Consensus 206 -~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEF 279 (885)
T KOG2023|consen 206 -TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEF 279 (885)
T ss_pred -cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHH
Confidence 223346889999999999999999999999999999999999999999999999999999998 99999999998
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=155.58 Aligned_cols=193 Identities=12% Similarity=0.201 Sum_probs=161.9
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcch-h------hHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFST-D------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~-~------~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
++|+|.......|..||+.|||.+.. + +...|-.++.+.|++||+.++..|++ +.|..+..+++++|.+|..
T Consensus 42 ~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ 120 (859)
T KOG1241|consen 42 EVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACI 120 (859)
T ss_pred HHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHh
Confidence 46788888899999999999998843 2 36789999999999999999999999 9999999999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHH--------------------------------------HHHHHHh-hcccHHHHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKS--------------------------------------QIILLLQ-TCDNDNIRRKICDA 115 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~--------------------------------------~ll~~l~-~~~~~~vr~~a~~~ 115 (199)
+++ .+.||+|.+.++.+ ++++..+ .+++..||..|..+
T Consensus 121 ElP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~a 197 (859)
T KOG1241|consen 121 ELP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNA 197 (859)
T ss_pred hCc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHH
Confidence 999 79999998877643 1333333 67888899988888
Q ss_pred HHHHHHHhHhhhcc-CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH-HHHHHHHhhCCCCCHHHh
Q psy15255 116 AAEVARNLIDDAGN-NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV-IKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 116 i~~i~~~~~~~~~~-~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~-l~~~l~~~l~d~~~~~Vr 193 (199)
+..-....-.++.+ ...+-++++.....+++|.++|.+|+.+|++|+...++.+.+|+.. +..+....|.++ +++|+
T Consensus 198 L~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~-~deVa 276 (859)
T KOG1241|consen 198 LYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD-NDEVA 276 (859)
T ss_pred HHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHH
Confidence 87655433222211 3456789999999999999999999999999999999999888765 888889999987 99999
Q ss_pred hhhhcC
Q psy15255 194 ALQLKF 199 (199)
Q Consensus 194 ~~A~~f 199 (199)
.+|+||
T Consensus 277 lQaiEF 282 (859)
T KOG1241|consen 277 LQAIEF 282 (859)
T ss_pred HHHHHH
Confidence 999998
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=159.97 Aligned_cols=165 Identities=33% Similarity=0.558 Sum_probs=141.2
Q ss_pred HHHHhhcchhh------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HH
Q psy15255 19 VLLRKIFSTDF------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQ 89 (199)
Q Consensus 19 vlLr~~~~~~~------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~ 89 (199)
.|+.++.++|+ ++.+.++.-+.+ +-..|-+.+...+++.+|. .+|+++|+++.+ .|+.| .+
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq----~aaVl~Rkl~~~----~w~~l~~e~~ 77 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQ----LAAVLLRKLLTK----HWSRLSAEVQ 77 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHH----HHHHHHHHHHHH----HhhcCCHHHH
Confidence 35666666654 444444333333 6667778888889999988 789999999863 89888 88
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh
Q psy15255 90 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE 169 (199)
Q Consensus 90 ~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l 169 (199)
+-||+.|+.+++.|+.++|||+.|+++++|++..++ ..||+|+++++++++++++..|++|+.+|..+++.++..+
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~----e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP----EKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc----cchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 899999999999999999999999999999998876 2899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 170 STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 170 ~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+|++.+.++|.+||+|++++ ||.+|++
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~-vr~~a~r 181 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSP-VRVAAVR 181 (1075)
T ss_pred chhHHHHHHHHHHhccCCcch-HHHHHHH
Confidence 999999999999999998555 9998864
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-16 Score=131.14 Aligned_cols=193 Identities=12% Similarity=0.246 Sum_probs=158.8
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcch-h------hHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFST-D------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~-~------~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
|++.|....++.|-.||+.|||.+.. | +...|..+++|.|+++|...+++|++ ++|...+.+++.+|.||+.
T Consensus 46 qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~ 124 (858)
T COG5215 46 QVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARM 124 (858)
T ss_pred HHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHh
Confidence 46677767799999999999998743 2 36789999999999999999999999 9999999999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHH----------------------------------HHHH-----HhhcccHHHHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQ----------------------------------IILL-----LQTCDNDNIRRKICDA 115 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~----------------------------------ll~~-----l~~~~~~~vr~~a~~~ 115 (199)
+++ ++.||+|...++++. ++.. ...+++..+|..++.+
T Consensus 125 Elp---~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~a 201 (858)
T COG5215 125 ELP---NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKA 201 (858)
T ss_pred hCc---cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 999 899999988877531 2222 2267788899888888
Q ss_pred HHHHHHHhHhhhc-cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhhCCCCCHHHh
Q psy15255 116 AAEVARNLIDDAG-NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 116 i~~i~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l~d~~~~~Vr 193 (199)
+..-....-+++- ....+.++++.....+.+|..++.+|+.+|++|+....+.+.+|+. .+..+...+|.++ +.+|.
T Consensus 202 L~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~-nd~va 280 (858)
T COG5215 202 LMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ-NDEVA 280 (858)
T ss_pred HHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHH
Confidence 8763333322221 2456789999999999999999999999999999988888887775 5677788899998 89999
Q ss_pred hhhhcC
Q psy15255 194 ALQLKF 199 (199)
Q Consensus 194 ~~A~~f 199 (199)
..|++|
T Consensus 281 ~qavEf 286 (858)
T COG5215 281 IQAVEF 286 (858)
T ss_pred HHHHHH
Confidence 999988
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=106.87 Aligned_cols=174 Identities=16% Similarity=0.203 Sum_probs=139.1
Q ss_pred HHHHHHhhcchhh------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC-------CCC
Q psy15255 17 SAVLLRKIFSTDF------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-------NNL 83 (199)
Q Consensus 17 a~vlLr~~~~~~~------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~-------~~~ 83 (199)
..+|.+ .+++|. +....++..++...+-..|-+.|.+..++.+-|. ++|..+||.+...+ ...
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~---~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARM---AAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHH---HHhHHHhhhhccCCHHHHHHHHHH
Confidence 344444 666652 5666777778888888889999999766655443 68899999987543 356
Q ss_pred hHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q psy15255 84 WPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT-TLKESALRLFT 159 (199)
Q Consensus 84 WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vr~~a~~~l~ 159 (199)
|-.+ .+..||+.++..+. .+.|..+..|+++++.|+...++ .+.||+|++.+...+.++.+ .+|++++.++|
T Consensus 80 Wl~l~~e~reqVK~~il~tL~-~~ep~~~s~Aaq~va~IA~~ElP---~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLG-SPEPRRPSSAAQCVAAIACIELP---QNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcC-CCCCCccchHHHHHHHHHHhhCc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 7655 67889999999999 78889999999999999998887 57999999999999987755 49999999999
Q ss_pred hhhHhhhhh-hHHHHHHHHHHHHHhhCCC-CCHHHhhhhhc
Q psy15255 160 SVPEIFGNQ-ESTYLVVIKQMLQQCLLPP-NPYSVQALQLK 198 (199)
Q Consensus 160 ~i~e~~~~~-l~~~~~~l~~~l~~~l~d~-~~~~Vr~~A~~ 198 (199)
++|+.++++ +..+.+.++.-+.+++... .+..||++|.+
T Consensus 156 yice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~ 196 (859)
T KOG1241|consen 156 YICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALN 196 (859)
T ss_pred HHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHH
Confidence 999998877 6777888888888888763 26779998864
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=95.17 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC
Q psy15255 66 DAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS 145 (199)
Q Consensus 66 ~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~ 145 (199)
.++|.|+||.+...++.. |.=...++|++.+.++. ++++.+|...+.+|..|++. .+..+||+++|.|.+++.+
T Consensus 66 s~aGLlLKNnvr~~~~~~-~~~~~~yiKs~~l~~lg-d~~~lIr~tvGivITTI~s~----~~~~~wpelLp~L~~~L~s 139 (885)
T KOG2023|consen 66 SLAGLLLKNNVRGHYNSI-PSEVLDYIKSECLHGLG-DASPLIRATVGIVITTIAST----GGLQHWPELLPQLCELLDS 139 (885)
T ss_pred HHhhhhHhccccccccCC-ChHHHHHHHHHHHhhcc-CchHHHHhhhhheeeeeecc----cccccchhHHHHHHHHhcC
Confidence 378999999987443333 33356799999999999 88899998888888877763 3468999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhhh-----HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQE-----STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~l-----~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
++....+.|+.++.+|||...+.+ ...++.+++-+.+.++++ ++.+|..|+.
T Consensus 140 ~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~ 196 (885)
T KOG2023|consen 140 PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVG 196 (885)
T ss_pred CcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHh
Confidence 999999999999999999876554 246788888999999998 9999998864
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=73.53 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC
Q psy15255 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN 188 (199)
Q Consensus 109 r~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~ 188 (199)
|+.++-.++.++..+... ...+.+++++.++.++.|+|++||+.||+++..++......+.+|.+.|...+...+.|+
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~- 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP- 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 555666666665555432 346889999999999999999999999999999999988888889999999999999998
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
|++||..|.
T Consensus 81 d~~Vr~~a~ 89 (97)
T PF12755_consen 81 DENVRSAAE 89 (97)
T ss_pred chhHHHHHH
Confidence 999998874
|
|
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=91.32 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=110.3
Q ss_pred ccccCCCHHHHHHHHHHHHhhcchhh---Hh--hhhc-cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC
Q psy15255 4 IQDAGRSVEERQMSAVLLRKIFSTDF---IE--IYSK-LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 77 (199)
Q Consensus 4 ~~~~~~~~~~R~~a~vlLr~~~~~~~---~~--~~~~-l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~ 77 (199)
..+...+.+.||.|.++||+.+..|| .+ .+.. .+.+.|..||..|++++.+ ++..+|+.++..|+.++...+|
T Consensus 45 a~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P 123 (1005)
T KOG2274|consen 45 AANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP 123 (1005)
T ss_pred HhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc
Confidence 34455678999999999999999987 22 2333 6789999999999999997 9999999999999999988665
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh--hh--ccCChHHHHHHHHHHhcCCCHHHHHH
Q psy15255 78 DAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID--DA--GNNLWPEFLQFLFQCANSDNTTLKES 153 (199)
Q Consensus 78 ~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~--~~--~~~~~~~ll~~l~~~~~~~~~~vr~~ 153 (199)
+.|||+++. ++++++ +.+.+--|.+.+++.++...+.. .+ +....+++.- +|......+-..|-.
T Consensus 124 ----d~WpElv~~-----i~~~l~-~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~-~f~~~~~~s~~~~~~ 192 (1005)
T KOG2274|consen 124 ----DEWPELVPF-----ILKLLS-SGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYR-IFALTIVYSIITRLG 192 (1005)
T ss_pred ----hhhHHHHHH-----HHHHHh-ccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhh-hhhhccccchhHHHH
Confidence 789999998 667888 57777778899999888776632 11 2234455443 344444444444544
Q ss_pred HH--HHHHhhhHhhh
Q psy15255 154 AL--RLFTSVPEIFG 166 (199)
Q Consensus 154 a~--~~l~~i~e~~~ 166 (199)
++ ..+.++...+.
T Consensus 193 aa~~~lf~sc~~li~ 207 (1005)
T KOG2274|consen 193 AARGKLFTSCLTLIT 207 (1005)
T ss_pred hhhhHHHHHHHHHHh
Confidence 44 66666654443
|
|
| >KOG1992|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=82.60 Aligned_cols=180 Identities=14% Similarity=0.253 Sum_probs=123.6
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh---HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF---IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 78 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~---~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~ 78 (199)
+++++.+.++.+|..|++-+||.++.+| +..-.++.+++++.||+.++.+.-+ ....+-.+++++++.+++..++
T Consensus 44 ~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP- 121 (960)
T KOG1992|consen 44 NLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP- 121 (960)
T ss_pred HHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-
Confidence 5778887899999999999999999885 1223468899999999999999998 7788999999999999988665
Q ss_pred CCCCChHHHHHHHHHH----------------------------------H-----------HHHHHh--------hccc
Q psy15255 79 AGNNLWPEFLQNNLKS----------------------------------Q-----------IILLLQ--------TCDN 105 (199)
Q Consensus 79 ~~~~~WpeLl~~~ik~----------------------------------~-----------ll~~l~--------~~~~ 105 (199)
..||.|+|.++++ + +..++. .+++
T Consensus 122 ---~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~ 198 (960)
T KOG1992|consen 122 ---DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHAND 198 (960)
T ss_pred ---hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccc
Confidence 7899999988853 0 111111 1112
Q ss_pred HHHHHHHHHHHHHHHHHh-------HhhhccCChHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHhhhHhh
Q psy15255 106 DNIRRKICDAAAEVARNL-------IDDAGNNLWPEFLQFLFQCANSDN-------------TTLKESALRLFTSVPEIF 165 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~-------~~~~~~~~~~~ll~~l~~~~~~~~-------------~~vr~~a~~~l~~i~e~~ 165 (199)
...-+...+++.-++... ++.+..++..+.++.+.+.++... .++|..-|+.+.-...-.
T Consensus 199 ~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kY 278 (960)
T KOG1992|consen 199 AAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKY 278 (960)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhh
Confidence 221111122222222222 223445677788888888887322 135667788877777777
Q ss_pred hhhhHHHHHHHHHHHHHhhCC
Q psy15255 166 GNQESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 166 ~~~l~~~~~~l~~~l~~~l~d 186 (199)
++.+.++++.++...-+.+.+
T Consensus 279 eEef~~fl~~fv~~~W~LL~~ 299 (960)
T KOG1992|consen 279 EEEFQPFLPDFVTATWNLLVS 299 (960)
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 777788888777666555554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-07 Score=70.37 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=109.9
Q ss_pred ccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHH---HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCC
Q psy15255 6 DAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLK---SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 82 (199)
Q Consensus 6 ~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik---~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~ 82 (199)
+++.+=..|.-|..-||+.+..+. -....+.....++ ..+...+.+ ....|.+.+|.+++.++..+ ..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~---~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l-----~~ 86 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNA---PEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQL-----GS 86 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHH-----GG
T ss_pred CCccCHHHHHHHHHHHHHHHHcCC---ccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHH-----hH
Confidence 344566778888888999887540 1123344445566 566677776 67778888999999999887 22
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHH-HHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~l-l~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
........++ ..|+..+. ++...++..|..++..|+... ..-+.+ ++.+..+..+.++.+|..++..+..+
T Consensus 87 ~~~~~~~~~l-~~Ll~~~~-~~~~~i~~~a~~~L~~i~~~~------~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 87 HFEPYADILL-PPLLKKLG-DSKKFIREAANNALDAIIESC------SYSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGHHHHHHHH-HHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHc-cccHHHHHHHHHHHHHHHHHC------CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3433322211 12555666 677889999888888777532 123555 88889999999999999999999999
Q ss_pred hHhhh---hhhHH--HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFG---NQEST--YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~---~~l~~--~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++..+ ..+.. ..+.+.+.+..++.|+ +++||.+|-
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar 198 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAAR 198 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHH
Confidence 98888 33543 3578999999999998 999998874
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=64.76 Aligned_cols=53 Identities=26% Similarity=0.513 Sum_probs=45.1
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhH----hhhhccCHhhHHHHHHHHHHHHhc
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFI----EIYSKLAVNDQNNLKSQIILLLQT 54 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~----~~~~~l~~~~~~~ik~~ll~~L~~ 54 (199)
+++.+.+.++.+|++|+++|||.++.+|. ..|..+++++|+.||+.++++|.+
T Consensus 21 ~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~~ 77 (77)
T PF03810_consen 21 QILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLLQ 77 (77)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHcC
Confidence 46667767999999999999999999843 445599999999999999999863
|
Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A .... |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-06 Score=75.32 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=124.8
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhhcCcCC-------CCChHHH---HHHHHHHHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDN-DNIRRKICDAAAEVARNLIDDAG-------NNLWPEF---LQNNLKSQIIL 98 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~-~~vR~~~~~~ia~la~~~l~~~~-------~~~WpeL---l~~~ik~~ll~ 98 (199)
|....++...+....-..+.+.|-++++ +..| .++|.++|+.+...+ ...|-.+ .+..+|...+.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~R----m~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~ 101 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQVLCDLNSNDQLR----MVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALR 101 (858)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhccCCcHHHH----HHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 6667778888888888899999998643 3444 478889999875432 3556444 56788888999
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH-HHHHHHHHHHHhhhHhhhhh-hHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT-TLKESALRLFTSVPEIFGNQ-ESTYLVVI 176 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vr~~a~~~l~~i~e~~~~~-l~~~~~~l 176 (199)
.+. .+.|.....|+..++.|+...++ +..||+|+..+...+.++.| .++..++.++++.|+...++ +....+.+
T Consensus 102 aL~-s~epr~~~~Aaql~aaIA~~Elp---~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 102 ALK-SPEPRFCTMAAQLLAAIARMELP---NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred Hhc-CCccHHHHHHHHHHHHHHHhhCc---cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 998 89999999999999999998876 57999999999999987744 57889999999999987764 55545544
Q ss_pred -HHHHHHhhCCCCCHHHhhhhhc
Q psy15255 177 -KQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 177 -~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++...++.+.+..||++|++
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~ 200 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALK 200 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHH
Confidence 5555555665447789999874
|
|
| >KOG1993|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=77.35 Aligned_cols=115 Identities=14% Similarity=0.236 Sum_probs=91.6
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcchhhH-hhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC
Q psy15255 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFI-EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 79 (199)
Q Consensus 1 ~~~~~~~~~~~~~R~~a~vlLr~~~~~~~~-~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~ 79 (199)
++++.|.+.+..+|=+|.+-+||-+...|. +.-..+++|.|+.||..++..+. |+++.+..+.|-++|.+||..+|
T Consensus 38 ~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-- 114 (978)
T KOG1993|consen 38 YSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-- 114 (978)
T ss_pred HHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC--
Confidence 356778888999999999999999988842 11245899999999999999998 59999999999999999999765
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhHh
Q psy15255 80 GNNLWPEFLQNNLKSQIILLLQT---CDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 80 ~~~~WpeLl~~~ik~~ll~~l~~---~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..||+|.+.+. +.++. ..+..+.+++.-++..+.+.+..
T Consensus 115 --reWP~Lf~~L~-----~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat 156 (978)
T KOG1993|consen 115 --REWPDLFPDLL-----GQLQSSLGTGDSLVQHRILITLHHILKALAT 156 (978)
T ss_pred --ccchhHHHHHH-----HHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 68999999844 45551 23566677777777777766654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-06 Score=68.45 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
.|...+.+++++.||..++...|.+... ...| |+++.. +...+. ++++.||..+...++.+.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~------~~~~~~~a~~~-----l~~~~~-D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKK------NPLYSPKIVEQ-----SQITAF-DKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccccc------ccccchHHHHH-----HHHHhh-CCCHHHHHHHHHHHhccC-----
Confidence 3444434448888888888888776422 2223 444432 222333 567777777655553211
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-++-++.|..++.|+++.||..|..+++.+... ...+.+.+...+.|+ +++||..|+
T Consensus 157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~-~~~VR~~A~ 213 (280)
T PRK09687 157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDK-NEEIRIEAI 213 (280)
T ss_pred ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 145667777777777778888888887776110 123334455566775 777777665
|
|
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-06 Score=77.91 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcchhhHhh-----hhccCHhhHHHHHHHHHHHHhcCCchhHHHH
Q psy15255 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDFIEI-----YSKLAVNDQNNLKSQIILLLQTCDNDNIRRK 63 (199)
Q Consensus 1 ~~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~-----~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~ 63 (199)
+|++++.+.+.++||.|++-|||.+.++|... =..++++.|..||..++..+.. ....+|..
T Consensus 42 LqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvq 108 (1010)
T KOG1991|consen 42 LQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQ 108 (1010)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHH
Confidence 36778888889999999999999999984221 1127899999999999999998 33344443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=65.91 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+..++.+ +++.+|..++.+.|.+...- ..=++.++. |..++..++++.||..++..++.+....
T Consensus 57 ~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~------~~~~~a~~~-----L~~l~~~D~d~~VR~~A~~aLG~~~~~~-- 122 (280)
T PRK09687 57 RLAIELCSS-KNPIERDIGADILSQLGMAK------RCQDNVFNI-----LNNLALEDKSACVRASAINATGHRCKKN-- 122 (280)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHhcCCCc------cchHHHHHH-----HHHHHhcCCCHHHHHHHHHHHhcccccc--
Confidence 345566677 89999999999999874210 001122332 2234334889999999999988764311
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
....+.+++.+...+.|+++.||..|..+++.+-. ...++.+..++.|+ |++||..|.
T Consensus 123 ---~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~-~~~VR~~A~ 180 (280)
T PRK09687 123 ---PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDP-NGDVRNWAA 180 (280)
T ss_pred ---cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCC-CHHHHHHHH
Confidence 22357788888899999999999999999986531 22445667788897 999998875
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.5e-06 Score=53.97 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=60.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|++.+..++++.+|..++.+++.+ .-++.++.+.++++|+++.+|..|+.+++.+-. +.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~ 62 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PE 62 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HH
Confidence 556674489999999988877632 235789999999999999999999999998731 33
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+.+...++++++..||.+|+
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHH
Confidence 4455666777754777887775
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-06 Score=51.07 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 148 TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 148 ~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
|.+|..|+.+|+.+++..++.+.++.+.+++.+..+++|+ +++||..|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~ 49 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAA 49 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 6899999999999988888888899999999999999998 889999887
|
... |
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.4e-05 Score=70.24 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhcchhh-----------HhhhhccC-HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc
Q psy15255 11 VEERQMSAVLLRKIFSTDF-----------IEIYSKLA-VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 78 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~-----------~~~~~~l~-~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~ 78 (199)
+..|..--.+++++...+| ...|..++ +..|..++...-+.-.+ .+++||+.+|+-.|.+++.+..
T Consensus 193 ~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d-~~~~Vr~~~a~~l~~~a~~~~~- 270 (759)
T KOG0211|consen 193 EKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQD-DTPMVRRAVASNLGNIAKVLES- 270 (759)
T ss_pred HHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccc-cchhhHHHHHhhhHHHHHHHHH-
Confidence 3446666667777665543 56677787 77888888888888888 9999999999999999988755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 79 AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 79 ~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
...|.++++. +..+.. ++..+||..|.+....+...+.++ ...-..+.+.+++...|++|.+|......+
T Consensus 271 --~~~~s~v~~~-----~~~L~~-DdqdsVr~~a~~~~~~l~~l~~~~--~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~ 340 (759)
T KOG0211|consen 271 --EIVKSEVLPT-----LIQLLR-DDQDSVREAAVESLVSLLDLLDDD--DDVVKSLTESLVQAVEDGSWRVSYMVADKF 340 (759)
T ss_pred --HHHHhhccHH-----Hhhhhh-cchhhHHHHHHHHHHHHHHhcCCc--hhhhhhhhHHHHHHhcChhHHHHHHHhhhh
Confidence 4455555553 445666 788999999999999888765432 145567999999999999999999999999
Q ss_pred HhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 159 TSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 159 ~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
..+.+.++++. ......+.+...++|. ..++|.++
T Consensus 341 ~~L~~~~~~~~--~~~~~~~~~~~l~~~~-~~e~r~a~ 375 (759)
T KOG0211|consen 341 SELSSAVGPSA--TRTQLVPPVSNLLKDE-EWEVRYAI 375 (759)
T ss_pred hhHHHHhcccc--CcccchhhHHHHhcch-hhhhhHHh
Confidence 99998887732 2234445555666775 66777654
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00031 Score=61.76 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
+.+...|.++-+.+......+ ++.--.+-+.+.+-|.+ +++.+|.-+-++++.+... ...+.+
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~---------~~~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~-------~~~~~l 115 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHED---------PELLILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP-------EMAEPL 115 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTS---------HHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH-------HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc-------chhhHH
Confidence 356677777777777666554 33334566677777888 8999998888888887622 233444
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH-HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE-FLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~-ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.+. +.+++. ++++.||++|+.++..+....++ ..+. +++.+.+++.|+++.++.+|+.++..+ ..-+
T Consensus 116 ~~~-----v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~-----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 116 IPD-----VIKLLS-DPSPYVRKKAALALLKIYRKDPD-----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp HHH-----HHHHHH-SSSHHHHHHHHHHHHHHHHHCHC-----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH
T ss_pred HHH-----HHHHhc-CCchHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCc
Confidence 444 556777 89999999999999998876543 3333 789999999999999999999999998 2111
Q ss_pred hhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 167 NQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 167 ~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+........+...+.+.+.++ +|-++..+++
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~ 214 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDP-DPWLQIKILR 214 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhhccccc-chHHHHHHHH
Confidence 111134455555556566776 7777665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=60.46 Aligned_cols=86 Identities=13% Similarity=0.216 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l 184 (199)
++.+|..+.-+++.++...+. ..+..+|.++.++.|+++.||..|+.++..+... ++....+.+...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 467899988888888865542 4556689999999999999999999999998753 33334455645555688
Q ss_pred CCCCCHHHhhhhhcC
Q psy15255 185 LPPNPYSVQALQLKF 199 (199)
Q Consensus 185 ~d~~~~~Vr~~A~~f 199 (199)
.|+ |++||..|..|
T Consensus 73 ~D~-~~~Ir~~A~~~ 86 (178)
T PF12717_consen 73 VDE-NPEIRSLARSF 86 (178)
T ss_pred cCC-CHHHHHHHHHH
Confidence 997 99999988643
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=55.57 Aligned_cols=112 Identities=10% Similarity=0.168 Sum_probs=76.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 136 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll 136 (199)
++.||..+.-++|.++... |.++..++. .+..++. ++++.||..|+.++..++.... ....+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---------~~~ve~~~~-~l~~~L~-D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---------PNLVEPYLP-NLYKCLR-DEDPLVRKTALLVLSHLILEDM----IKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---------cHHHHhHHH-HHHHHHC-CCCHHHHHHHHHHHHHHHHcCc----eeehhhhh
Confidence 4667887777777777543 333221111 1556777 8999999999999988775422 34556777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHh
Q psy15255 137 QFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQC 183 (199)
Q Consensus 137 ~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~ 183 (199)
..+..++.|+++.+|..|..+|..+.....++ +..+...++..+..+
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 88888999999999999999999998774443 344444444444444
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00019 Score=67.42 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 137 QFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 137 ~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.|..++.|+++.||..|..+|+.+- . -....+.+...+.|+ |++||.+|.
T Consensus 841 ~~L~~~L~D~~~~VR~~A~~aL~~~~------~---~~~a~~~L~~al~D~-d~~Vr~~A~ 891 (897)
T PRK13800 841 PALVEALTDPHLDVRKAAVLALTRWP------G---DPAARDALTTALTDS-DADVRAYAR 891 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhccC------C---CHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 44444444444444444444444430 0 012233445566675 777776664
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=48.46 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=64.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+++++.+|..++.+++.+. =++.++. |+.++. ++++.||..++..++.+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~-----L~~~l~-d~~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPA-----LIELLK-DEDPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHH-----HHHHHT-SSSHHHHHHHHHHHHCCH------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhC------
Confidence 57888855699999999888888332 2455665 556776 899999999988887542
Q ss_pred hccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy15255 127 AGNNLWPEFLQFLFQCANSD-NTTLKESALRLFT 159 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~ 159 (199)
.++.++.+.+++.++ +..+|..|+.+++
T Consensus 60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 266788888888765 6778999999875
|
|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00036 Score=63.68 Aligned_cols=110 Identities=13% Similarity=0.211 Sum_probs=80.3
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHh-hhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIE-IYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGN 81 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~-~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~ 81 (199)
+..+...+..+|..|.+-+||.++.+|.+ .-+.+.++.+..||..++.++-+ .+....-+.|.+++-+|+..++
T Consensus 44 I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP---- 118 (947)
T COG5657 44 INLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP---- 118 (947)
T ss_pred HHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc----
Confidence 44555678899999999999999999633 33567788888999999999998 4444455889999999988765
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
..||.|+|. |+..++ +.+-..-.+...++.+|.+..
T Consensus 119 deWpTL~~D-----L~~~Ls-~~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 119 DEWPTLVPD-----LLSLLS-EKDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred ccchhHHHH-----HHhhhc-ccchHHHHHHHHHHHHHHHHH
Confidence 689999998 556666 333223333445555555544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=68.18 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|.--|...-.. ..++.++.| +++.||..++..++.+... .+.-.
T Consensus 726 ~d~~VR~~Av~aL~~~~~~------------------~~l~~~l~D-~~~~VR~~aa~aL~~~~~~---------~~~~~ 777 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDV------------------ESVAGAATD-ENREVRIAVAKGLATLGAG---------GAPAG 777 (897)
T ss_pred CCHHHHHHHHHHHhcccCc------------------HHHHHHhcC-CCHHHHHHHHHHHHHhccc---------cchhH
Confidence 5788999887777764110 125678888 8999999999988877422 11112
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+. |..++. ++++.||..++..+..+.. -+.+.+.+.+.+.|++|.||..|..+|+.+..
T Consensus 778 ~~-----L~~ll~-D~d~~VR~aA~~aLg~~g~----------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----- 836 (897)
T PRK13800 778 DA-----VRALTG-DPDPLVRAAALAALAELGC----------PPDDVAAATAALRASAWQVRQGAARALAGAAA----- 836 (897)
T ss_pred HH-----HHHHhc-CCCHHHHHHHHHHHHhcCC----------cchhHHHHHHHhcCCChHHHHHHHHHHHhccc-----
Confidence 21 334666 8889999998887764321 13345668888999999999999999987542
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..-.+.+..++.|+ +..||.+|.
T Consensus 837 -----~~a~~~L~~~L~D~-~~~VR~~A~ 859 (897)
T PRK13800 837 -----DVAVPALVEALTDP-HLDVRKAAV 859 (897)
T ss_pred -----cchHHHHHHHhcCC-CHHHHHHHH
Confidence 12235666788898 999998885
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=42.82 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
++|.+.++++|+++.||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=66.26 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH------------------------
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS------------------------ 94 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~------------------------ 94 (199)
.-.+.++..+++++.+ |+..|+.+++.+.|.++.. .-|..+|+++.+
T Consensus 853 s~~~e~~~~iieaf~s-p~edvksAAs~ALGsl~vg--------nl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv 923 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNS-PSEDVKSAASYALGSLAVG--------NLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASV 923 (1233)
T ss_pred CcchhhHHHHHHHcCC-ChHHHHHHHHHHhhhhhcC--------chHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc
Confidence 3445778899999999 9999999999999999853 333344433311
Q ss_pred --------HHHHHHh--hc-ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 95 --------QIILLLQ--TC-DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 95 --------~ll~~l~--~~-~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++.++- |+ .....|.-.++|++.++... -..|+|.|...+.++++..|..++.++-....
T Consensus 924 d~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e--------pesLlpkL~~~~~S~a~~~rs~vvsavKfsis 995 (1233)
T KOG1824|consen 924 DGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE--------PESLLPKLKLLLRSEASNTRSSVVSAVKFSIS 995 (1233)
T ss_pred chhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC--------hHHHHHHHHHHhcCCCcchhhhhhheeeeeec
Confidence 1222221 22 23445777777777766432 25799999999999999999999988776665
Q ss_pred hhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 164 IFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-+..+.++...-+.-+...++|| |.+||..|+
T Consensus 996 d~p~~id~~lk~~ig~fl~~~~dp-Dl~VrrvaL 1028 (1233)
T KOG1824|consen 996 DQPQPIDPLLKQQIGDFLKLLRDP-DLEVRRVAL 1028 (1233)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCC-chhHHHHHH
Confidence 555556666666666777889998 999998875
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.9e-05 Score=52.94 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=71.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-HH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-YL 173 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~ 173 (199)
++.++. ++++.+|..++.++..++....+.. .... ...++.+.+.+.++++.++..++.+++.++...+..... ..
T Consensus 12 l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 89 (120)
T cd00020 12 LVSLLS-SSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89 (120)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 445666 7778999999999988876422100 0111 256777777888899999999999999999765433222 22
Q ss_pred HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 174 VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 174 ~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+++.+...++++ +.+++..|+.
T Consensus 90 ~g~l~~l~~~l~~~-~~~~~~~a~~ 113 (120)
T cd00020 90 AGGVPKLVNLLDSS-NEDIQKNATG 113 (120)
T ss_pred CCChHHHHHHHhcC-CHHHHHHHHH
Confidence 45788888899997 8999988763
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00031 Score=48.07 Aligned_cols=70 Identities=11% Similarity=0.247 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
+++.++.+++. ++.++. +++..||..||+++..|+....+.. ..+.++++..+++.+.|+++.||.+|..
T Consensus 21 ~~~~l~~Il~p-VL~~~~-D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 21 ISKYLDEILPP-VLKCFD-DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHH-HHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 44444444433 557888 9999999999999999987665432 3588999999999999999999988743
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00049 Score=59.24 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHH--------HHHHHhhcccHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQ--------IILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~--------ll~~l~~~~~~~vr~~a~~ 114 (199)
.+-..|++.|.+ +.+...+|...+.+..-. +.--+..|-..++-+-||. +++.+. +.+...|..-..
T Consensus 271 ~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~-~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~-~~~~~~k~~yL~ 345 (415)
T PF12460_consen 271 ELLDKLLELLSS---PELGQQAAKAFGILLSDS-DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK-EADDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc-HHhcCccccchhhhHHhHHHHHHHHHHHHHHHh-hcChhhHHHHHH
Confidence 445558888887 566777777777776551 1000223433444444442 555555 444446777777
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
.++.+....+..-...+.++++|.+.+++.-+|+.++.+++.++..+++.-++-+.+|.+.+++.+..
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 88888888775445578999999999999999999999999999999998876678899999888764
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00045 Score=60.75 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=77.2
Q ss_pred CHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 37 AVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 37 ~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
+++.-..+-..+.+++.+ +++.||++++.++..+.+..-+.-... |-+. +..++. ++++.|+..|+.++
T Consensus 108 ~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~--------l~~lL~-d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKDPDLVEDE-LIPK--------LKQLLS-DKDPSVVSAALSLL 176 (526)
T ss_dssp SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHH--------HHHHTT-HSSHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccCHHHHHHH-HHHH--------Hhhhcc-CCcchhHHHHHHHH
Confidence 455667788888999998 999999999999999998732211111 3332 334665 88899999988888
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
..+ .. .+.......+.+...+.+.+.+++|-.+...++++..++.
T Consensus 177 ~~i-~~-~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 177 SEI-KC-NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp HHH-HC-THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHH-cc-CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 887 21 1111113456666666666677777777777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00021 Score=52.03 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh------------
Q psy15255 58 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID------------ 125 (199)
Q Consensus 58 ~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~------------ 125 (199)
+.||+++|.+++.+++...+ ..||++++. +++.++ .++........++..+...+.+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P----~~Wp~~l~~-----l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~ 70 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP----QQWPDFLED-----LLQLLQ--SSPQHLELVLRILRILPEEITDFRRSSLSQERRR 70 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TTSTTHHHH-----HHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh----hhCchHHHH-----HHHHhc--cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHH
Confidence 46899999999999999875 679999887 344444 2233333344444444333321
Q ss_pred ---hhccCChHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 126 ---DAGNNLWPEFLQFLFQCANSDN----TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 126 ---~~~~~~~~~ll~~l~~~~~~~~----~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.......|.+++.+.+.++... ......+++++...+...+...... +.+++.+.+.++++ +.+.+|++
T Consensus 71 ~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~---~~~~~A~~ 146 (148)
T PF08389_consen 71 ELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP---ELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC---CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH---HHHHHHHH
Confidence 0011345778888888887542 7889999999999998776553111 23666777777665 35777664
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.7e-05 Score=48.28 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
+.+|..++.+++.++....+ ....+.+++++.|..+++|+++.||..|+.+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~-~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPE-LLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHH-HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999876644332 23458899999999999999999999999999864
|
... |
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00062 Score=63.93 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhh----HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC--------
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVND----QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-------- 77 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~----~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~-------- 77 (199)
...+|..|..-|.+++..- ..+++.+ ++||-=.|-..+.+.....||-..|..+|.||+....
T Consensus 475 ~a~Vra~Al~Tlt~~L~~V-----r~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~ 549 (1431)
T KOG1240|consen 475 EADVRATALETLTELLALV-----RDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQEL 549 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhc-----cCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678999988888877431 1122211 2566666666666667788999999999999987621
Q ss_pred ------cC-CCCChHHH-----HHH---HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHH
Q psy15255 78 ------DA-GNNLWPEF-----LQN---NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQC 142 (199)
Q Consensus 78 ------~~-~~~~WpeL-----l~~---~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~ 142 (199)
.+ ..++-|+. ++. .|.+....++. ++.+-||...++.|+.+...+.. .+.=+-||+.|...
T Consensus 550 ~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTf 625 (1431)
T KOG1240|consen 550 RQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITF 625 (1431)
T ss_pred HhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHH
Confidence 01 11122322 223 33445555665 77789999989998887764432 23345699999999
Q ss_pred hcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 143 ANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 143 ~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++|.||.+|-+-+.-+..++-+++..- --+.|++++.+++.|+ ++-|-..|+
T Consensus 626 LNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~-EE~Viv~aL 677 (1431)
T KOG1240|consen 626 LNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDG-EEAVIVSAL 677 (1431)
T ss_pred hcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCc-chhhHHHHH
Confidence 999999999999999988887776542 2257788999999998 777766654
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0015 Score=57.92 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc---------------CCCCChHHHHHHHHHH------------
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD---------------AGNNLWPEFLQNNLKS------------ 94 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~---------------~~~~~WpeLl~~~ik~------------ 94 (199)
..|-+..|..|.+ +.+.||..+++++|.|++.+--. .-.+.+||.++..+|+
T Consensus 603 ~~ivStiL~~L~~-k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 603 SMIVSTILKLLRS-KPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5688899999999 99999999999999998766211 1257889988877654
Q ss_pred ----------------------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 95 ----------------------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 95 ----------------------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
+|+.++. +.+..+|+.|.++.+-|+..
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk-s~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK-SWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HhhHHHHHhhhhhhhhHHhh
Confidence 1677777 67889999998888877776
Q ss_pred hHhhh--------cc--------------------CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 123 LIDDA--------GN--------------------NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 123 ~~~~~--------~~--------------------~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
+.+.. +. ..--..+|.+..=-..|+..|+...+++++-+.|+.++.-..|.-
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy 840 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY 840 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 64310 00 011246777766666788899999999999999999988788999
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|.+++-.+|.|. |+--|..|.
T Consensus 841 ~itPlleDAltDr-D~vhRqta~ 862 (975)
T COG5181 841 SITPLLEDALTDR-DPVHRQTAM 862 (975)
T ss_pred HhhHHHHhhhccc-chHHHHHHH
Confidence 9999999999996 887776654
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00097 Score=58.62 Aligned_cols=144 Identities=16% Similarity=0.110 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
.+..+-..+-..+++..+...|. .+-.+.+.+-..+- ...=|.+ +|. ++..+. +..+.||+.+.+++
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re-~~~~a~~~~~~~Lg---~~~EPyiv~~lp~-----il~~~~-d~~~~Vr~Aa~~a~ 240 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNRE-AALLAFEAAQGNLG---PPFEPYIVPILPS-----ILTNFG-DKINKVREAAVEAA 240 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHH-HHHHHHHHHHHhcC---CCCCchHHhhHHH-----HHHHhh-ccchhhhHHHHHHH
Confidence 33455566667777755555554 34344444333332 2222333 443 566776 78889999999988
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
-.+.+.+.. ...+.++|.+...+.+..|+.+.++++.++.+.+..++++......+++.+...|.|. .++||.++
T Consensus 241 kai~~~~~~----~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~ 315 (569)
T KOG1242|consen 241 KAIMRCLSA----YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT-KPEVRKAG 315 (569)
T ss_pred HHHHHhcCc----chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC-CHHHHHHH
Confidence 888876653 4566777777777776699999999999998888888888888999999999999997 99999887
Q ss_pred hc
Q psy15255 197 LK 198 (199)
Q Consensus 197 ~~ 198 (199)
.+
T Consensus 316 ~~ 317 (569)
T KOG1242|consen 316 IE 317 (569)
T ss_pred HH
Confidence 53
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=58.59 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
...++..+..+|.+ +++.||.-++..++.+++..-.....-.=+++++. ++.++. +++..|...|..++..++
T Consensus 75 ~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~-----i~~~L~-~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 75 LPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL-----IIQCLR-DPDLSVAKAAIKALKKLA 147 (503)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH-----HHHHHc-CCcHHHHHHHHHHHHHHh
Confidence 56778889999999 99999999999888776443100000011223333 566887 899999999999998888
Q ss_pred HHhHhhhccCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 121 RNLIDDAGNNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 121 ~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+..... ..- -+.+++.|.+.+..++..+|.-++.+++.++..-++.+.... ..+++.+...+.++ |.=|+..|++
T Consensus 148 ~~~~~~--~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnale 224 (503)
T PF10508_consen 148 SHPEGL--EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALE 224 (503)
T ss_pred CCchhH--HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHH
Confidence 643210 000 122378888888777888898899999998766544432222 24777777788885 9889988875
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=50.80 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
+-..+++.|.+ ++..+|..++.+++.++...-+. -..+.+|. ++.++. ++++.++..++.++..+
T Consensus 8 ~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~---------l~~~l~-~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPA---------LVQLLK-SEDEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHH---------HHHHHh-CCCHHHHHHHHHHHHHH
Confidence 45567888887 77899999999999888652000 00133333 445666 78899999999999988
Q ss_pred HHHhHhhhccCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 120 ARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 120 ~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
+....+. ....+. .+++.+.+.+.+++..+|+.++.++..+++
T Consensus 77 ~~~~~~~-~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 77 AAGPEDN-KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ccCcHHH-HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 7643221 011232 378889999999999999999999998864
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00071 Score=59.66 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
++++.+|.++.-.|++....+ +..-..+.+ ..+-..++.+|.+ ++..|...++.++..+++.. ..-..+
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~---~~l~~~i~~~L~~-~d~~Va~~A~~~L~~l~~~~------~~~~~l 156 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHS-EGAAQLLVD---NELLPLIIQCLRD-PDLSVAKAAIKALKKLASHP------EGLEQL 156 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCC-HHHHHHhcC---ccHHHHHHHHHcC-CcHHHHHHHHHHHHHHhCCc------hhHHHH
Confidence 467899999988888877543 111122211 2355668999999 99999999999999998643 111222
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
++.-....|-.++. .+++.+|.++.+++..+++...+.. ...+ ..+++.+.+.+.++|.-+|..++.+++.+++
T Consensus 157 ~~~~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 157 FDSNLLSKLKSLMS-QSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred hCcchHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 22112223445555 5578899999999999987655421 1122 2389999999999999999999999999998
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=56.47 Aligned_cols=154 Identities=12% Similarity=0.199 Sum_probs=99.4
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN 82 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~ 82 (199)
++.+. .++..|-+|--+|+..+......+++ .-+..-..+|++=.+ +.+.|-+.+.+.+..++....+..
T Consensus 337 vL~d~-~~~~~k~laLrvL~~ml~~Q~~~l~D-----stE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 337 VLSDS-EDEIIKKLALRVLREMLTNQPARLFD-----STEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHccc-hhhHHHHHHHHHHHHHHHhchHhhhc-----hHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchh---
Confidence 45555 67788888888888887654222222 223445668888888 566565555655555554443310
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
. +.. +-.++.. .+...-..+...+..++..+.-+.+....|++.|.++++..+++..||.+|+.+++++.
T Consensus 407 ---~-I~~-----i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 ---C-IVN-----ISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---H-HHH-----HhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 0 110 2223442 23333334445666666555434456788999999999999999999999999999999
Q ss_pred Hhhh-hhhHHHHHHH
Q psy15255 163 EIFG-NQESTYLVVI 176 (199)
Q Consensus 163 e~~~-~~l~~~~~~l 176 (199)
..++ +.+.||...+
T Consensus 477 ~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 477 NRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHhHHhhhhHhhhc
Confidence 9999 6688876544
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0024 Score=57.75 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc---------------CCCCChHHHHHHHHHH------------
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD---------------AGNNLWPEFLQNNLKS------------ 94 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~---------------~~~~~WpeLl~~~ik~------------ 94 (199)
..|.+..|..|.+ +++.||.++++++|.|+..+-.. .-.+.+||.++..+++
T Consensus 798 pqi~stiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 798 PQICSTILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 3566778888888 99999999999999998776322 1257889988765532
Q ss_pred ----------------------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 95 ----------------------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 95 ----------------------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
+|+.++. .-...+|+.+.++.+.|+..
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk-ahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK-AHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHh
Confidence 2777777 67788999999999988877
Q ss_pred hHhhh--------cc--------------------CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 123 LIDDA--------GN--------------------NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 123 ~~~~~--------~~--------------------~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
+.+.. +. ..--..+|.|+.=-.-|+..|+...+++++-+.|+.++.-..|+-
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 65410 00 011246677766666678899999999999999999887788999
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+.+++-.+|.|. |+--|..|+
T Consensus 1036 av~PlleDAlmDr-D~vhRqta~ 1057 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDR-DLVHRQTAM 1057 (1172)
T ss_pred HhhHHHHHhhccc-cHHHHHHHH
Confidence 9999999999996 887776654
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00066 Score=59.18 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH----HHHHHHhhcccHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS----QIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~----~ll~~l~~~~~~~vr~~a~~ 114 (199)
+.-..+-..|..+|.+ ++++|..-+|-+++-|. ..|+|-.+..++. .|+.++. .+++.++.-|+.
T Consensus 233 ~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLs---------dg~ne~iq~vi~~gvv~~LV~lL~-~~~~~v~~PaLR 301 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHS-TDEEVLTDACWALSYLT---------DGSNEKIQMVIDAGVVPRLVDLLG-HSSPKVVTPALR 301 (514)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHh---------cCChHHHHHHHHccchHHHHHHHc-CCCcccccHHHh
Confidence 4445666778888888 99999999999999885 4566766666654 4778888 777788877788
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHH
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~V 192 (199)
+++.|+...-.....---..++|.|..++. ++...+|..||-+++.|.---.++....+ ..+++.+..+++.. |.++
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~ 380 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDI 380 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHH
Confidence 887765432110000011347888888887 56667999999999999876555554443 37888899999997 8999
Q ss_pred hhhhh
Q psy15255 193 QALQL 197 (199)
Q Consensus 193 r~~A~ 197 (199)
|++|+
T Consensus 381 rKEAa 385 (514)
T KOG0166|consen 381 RKEAA 385 (514)
T ss_pred HHHHH
Confidence 99986
|
|
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0042 Score=55.35 Aligned_cols=185 Identities=14% Similarity=0.219 Sum_probs=112.3
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhh---cCc
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT-CDNDNIRRKICDAAAEVARNL---IDD 78 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~-e~~~~vR~~~~~~ia~la~~~---l~~ 78 (199)
++.++ .-++..-.|.-+|-++++.. |.-+|++.|..||+-..+.+-. ..+..||.+=-.++-.+=-.+ ++.
T Consensus 54 IL~~S-~~pqskyiALs~LdklIttk----Wkllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKq 128 (1053)
T COG5101 54 ILNNS-KLPQSKYIALSLLDKLITTK----WKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQ 128 (1053)
T ss_pred HHhcc-cCcchhhhHHHHHHHHHHhh----hhhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34445 56777778888888888888 9999999999999988887655 245567755444443332222 234
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--------HhhhccCChHHHHHHHHHHhc-CCCHH
Q psy15255 79 AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL--------IDDAGNNLWPEFLQFLFQCAN-SDNTT 149 (199)
Q Consensus 79 ~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~--------~~~~~~~~~~~ll~~l~~~~~-~~~~~ 149 (199)
++...||++.|.+|...=..+=-|+++-.|-+...+-+......- ..+......|+++++.++.+. +.++.
T Consensus 129 eWP~nWP~FIpeli~~S~~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~S 208 (1053)
T COG5101 129 EWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDES 208 (1053)
T ss_pred hcccccchhhHHHHhhccchHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChH
Confidence 567899999998664321222223333333222222221111111 111223577999999999986 45888
Q ss_pred HHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 150 LKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 150 vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
.-++.+..+-.+++.++-.. -|...|+..+.+.+.+..|.++.
T Consensus 209 Li~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~pd~r~~ 251 (1053)
T COG5101 209 LIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSMPDTRVA 251 (1053)
T ss_pred HHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccCCchhHH
Confidence 88899999888888876431 13355666665555542154444
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=51.11 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
..+-..|+..+++ +.+.+|..+..++-.+....- .-+.++.. .+..+.. +.++.+|..+++.+..++.
T Consensus 93 ~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~----~l~~~~~-~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 93 DILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLE----ILSQGLK-SKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHH----HHHHHTT--S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHH----HHHHHHh-CCCHHHHHHHHHHHHHHHH
Confidence 3455667777777 778889988888888875431 11344111 1333444 7889999999998888776
Q ss_pred HhH--hhhccC--ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 122 NLI--DDAGNN--LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 122 ~~~--~~~~~~--~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
... ...... ..+.+.+.+.+++.|+++.||++|-.++..+...+++.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 655 111122 24789999999999999999999999999998877654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=60.16 Aligned_cols=133 Identities=18% Similarity=0.315 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCCCCChHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPE 86 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe 86 (199)
+++..+|+.|..=||..-..+ .++..|-+...+.. +-..|.- +.++++..+. ++|.+
T Consensus 15 s~d~~vr~~AE~~l~qle~~~--------------~f~~aL~~va~~~~~sl~lRQ~----A~v~L~~yie----~hW~~ 72 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLELTE--------------GFGVALAEVAANKDASLPLRQI----ALVLLKRYIE----KHWSP 72 (1005)
T ss_pred CCChhHHHHHHHHHhccccch--------------HHHHHHHHHHhCcccCchHHHH----HHHHHHHHHH----HhCCC
Confidence 478899999988888765433 25666666666632 2233442 3366666654 34433
Q ss_pred H-------------HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHH
Q psy15255 87 F-------------LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKES 153 (199)
Q Consensus 87 L-------------l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~ 153 (199)
+ ++..|+..|++++- +++..+|..+..++..|+....+ +.||+++|++.+++++++...-..
T Consensus 73 ~~E~fr~~~~~~e~~K~~IRe~Ll~~l~-~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~~n~n~i~~ 147 (1005)
T KOG2274|consen 73 NFEAFRYPLIVSEEVKALIREQLLNLLD-DSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSSGNENSIHG 147 (1005)
T ss_pred hHhhccCCCcccHHHHHHHHHHHHhhhh-ccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhccchhhhhh
Confidence 2 56677888999988 88889999999999999987654 699999999999999988888899
Q ss_pred HHHHHHhhhHhhhh
Q psy15255 154 ALRLFTSVPEIFGN 167 (199)
Q Consensus 154 a~~~l~~i~e~~~~ 167 (199)
|++++..+...+..
T Consensus 148 am~vL~el~~ev~~ 161 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877653
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.019 Score=43.09 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=104.8
Q ss_pred hhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHH--HHHHHHHhhcccHHHH
Q psy15255 32 IYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLK--SQIILLLQTCDNDNIR 109 (199)
Q Consensus 32 ~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik--~~ll~~l~~~~~~~vr 109 (199)
++...+......++..+.+.|.+ +++.-|..-+..+..+... +.|.-+...+-. +.++..++..+.+.++
T Consensus 14 ~~~~~~~~~l~~l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~-------~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~ 85 (165)
T PF08167_consen 14 LLSAPSKSALHKLVTRINSLLQS-KSAYSRWAGLCLLKVTVEQ-------CSWEILLSHGSQWLRALLSILEKPDPPSVL 85 (165)
T ss_pred hhcccCHHHHHHHHHHHHHHhCC-CChhhHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 34445677788899999999999 8888888766666666533 345444333221 3466788755667788
Q ss_pred HHHHHHHHHHHHHhHh------hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHh
Q psy15255 110 RKICDAAAEVARNLID------DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQC 183 (199)
Q Consensus 110 ~~a~~~i~~i~~~~~~------~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~ 183 (199)
..++.++..|.....+ ....+..|.+++.+.+..++ ....+.++.++..++...+..+.||.+.|-.++...
T Consensus 86 ~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 86 EAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 8899999888876542 11246778889999988876 566889999999999988888889988888777665
Q ss_pred h
Q psy15255 184 L 184 (199)
Q Consensus 184 l 184 (199)
+
T Consensus 164 l 164 (165)
T PF08167_consen 164 L 164 (165)
T ss_pred h
Confidence 4
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0082 Score=55.26 Aligned_cols=130 Identities=8% Similarity=0.048 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.+..+.+.+.... .++.--..-+.+.+-+.+ +++.+|--+-.+++.|-- ....+.+.
T Consensus 80 ~d~elKKLvYLYL~~ya~~---------~pelalLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~-------~~i~e~l~ 142 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARL---------QPEKALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV-------SSVLEYTL 142 (746)
T ss_pred CCHHHHHHHHHHHHHHccc---------ChHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc-------HHHHHHHH
Confidence 4566666666666655432 233333456667777777 888888766555554421 12223333
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
+. +.+++. +.++-||+.|+-++..+....++.. .-..+++.+.+++.|+|+.|...|+.++..+.+.
T Consensus 143 ~~-----lkk~L~-D~~pYVRKtAalai~Kly~~~pelv---~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 143 EP-----LRRAVA-DPDPYVRKTAAMGLGKLFHDDMQLF---YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HH-----HHHHhc-CCCHHHHHHHHHHHHHHHhhCcccc---cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 22 445666 8889999999888888776443210 1112455666778889999999999888888754
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=61.03 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=80.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+...+. ......|+.-...+.++....+.....+..|.|+|.+.|++.-+|..+|.++++++..+....+.-+..|.++
T Consensus 872 l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T 950 (1030)
T KOG1967|consen 872 LVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST 950 (1030)
T ss_pred HHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH
Confidence 455555 3445667776777777777776544568899999999999999999999999999999887776656789999
Q ss_pred HHHHHHHhhCCCCC---HHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNP---YSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~---~~Vr~~A~~ 198 (199)
+++.+...-.|+ | ..||..|++
T Consensus 951 lvp~lLsls~~~-~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 951 LVPYLLSLSSDN-DNNMMVVREDALQ 975 (1030)
T ss_pred HHHHHHhcCCCC-CcchhHHHHHHHH
Confidence 999999887776 4 568888764
|
|
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0034 Score=57.53 Aligned_cols=125 Identities=10% Similarity=0.150 Sum_probs=92.2
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP 133 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~ 133 (199)
....+|..++.....++... ...|... .+. ++.+.. .++...|.....++..++..+... -.-.
T Consensus 530 ~v~~Ir~~aa~~l~~l~~~~-----G~~w~~~~~i~k-----~L~~~~-q~~y~~R~t~l~si~~la~v~g~e---i~~~ 595 (759)
T KOG0211|consen 530 HVYSIREAAARNLPALVETF-----GSEWARLEEIPK-----LLAMDL-QDNYLVRMTTLFSIHELAEVLGQE---ITCE 595 (759)
T ss_pred hHHHHHHHHHHHhHHHHHHh-----CcchhHHHhhHH-----HHHHhc-CcccchhhHHHHHHHHHHHHhccH---HHHH
Confidence 34577888777777777654 3788765 443 333443 456788999889998877654321 2346
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|+|.+.++..|+.+.||-.+++.+..+...+...... ..|.+.+...-.|+ |.+||..|.
T Consensus 596 ~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~--~~v~pll~~L~~d~-~~dvr~~a~ 656 (759)
T KOG0211|consen 596 DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD--EEVLPLLETLSSDQ-ELDVRYRAI 656 (759)
T ss_pred HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH--HHHHHHHHHhccCc-ccchhHHHH
Confidence 79999999999999999999999999999888665433 57777777777786 899998764
|
|
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0085 Score=56.46 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=113.0
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
+..+.-..|.+.++..+++ .....|.....++..|.+.+ ..| -++++.+|...++.. . +-+...|+.+.+
T Consensus 690 ~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~------~~e~~~~i~k~I~EvIL~~-K-e~n~~aR~~Af~ 760 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLL------SAEHCDLIPKLIPEVILSL-K-EVNVKARRNAFA 760 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHhc-c-cccHHHHhhHHH
Confidence 3345557889999999998 77788888888888888664 233 456777776666666 4 778888999999
Q ss_pred HHHHHH--HHhHhhhccC----ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCC
Q psy15255 115 AAAEVA--RNLIDDAGNN----LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 115 ~i~~i~--~~~~~~~~~~----~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~ 187 (199)
++..|. ....+ .+.. ..++++..+..++...+..++-+.+-+++.+.....+.+ ..+...++.++..+++..
T Consensus 761 lL~~i~~i~~~~d-~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 761 LLVFIGAIQSSLD-DGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHHHHHHHHhhhc-ccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 998887 33332 2332 467788888888776677666555677777766655555 467888999999999997
Q ss_pred CCHHHhhhhhcC
Q psy15255 188 NPYSVQALQLKF 199 (199)
Q Consensus 188 ~~~~Vr~~A~~f 199 (199)
.++|+.+|+.|
T Consensus 840 -sreI~kaAI~f 850 (1176)
T KOG1248|consen 840 -SREIAKAAIGF 850 (1176)
T ss_pred -CHHHHHHHHHH
Confidence 99999999987
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=59.89 Aligned_cols=108 Identities=10% Similarity=0.155 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDN---TTLKESALRLFT 159 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~---~~vr~~a~~~l~ 159 (199)
.-|.|+|- |++++. -++..+|..+.+++-........ -...+...++|.+...-.|.+ ..||+.|+++++
T Consensus 906 ~~~~LlPL-----LLq~Ls-~~D~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~ 978 (1030)
T KOG1967|consen 906 QFPMLLPL-----LLQALS-MPDVIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLN 978 (1030)
T ss_pred chhhHHHH-----HHHhcC-CCccchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHH
Confidence 34566665 777888 68888988888888766654332 123688999999999888775 679999999999
Q ss_pred hhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 160 SVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 160 ~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+..+.. +.+|.+.++..+..++.|+ ---||.+|+.
T Consensus 979 aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~ 1017 (1030)
T KOG1967|consen 979 ALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVD 1017 (1030)
T ss_pred HHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHH
Confidence 999988765 7899999999999999998 6679999863
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.011 Score=55.40 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAE 118 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~ 118 (199)
+.-+.+-..|+++|.+ .+..||..+|.-+|.+...+ -++|....|++.+ .++.-.++++.=|.+|-.+++
T Consensus 337 eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rl--------p~~Lad~vi~svi-d~~~p~e~~~aWHgacLaLAE 406 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRL--------PPELADQVIGSVI-DLFNPAEDDSAWHGACLALAE 406 (1133)
T ss_pred HHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccC--------cHHHHHHHHHHHH-HhcCcCCchhHHHHHHHHHHH
Confidence 5557888999999999 99999999999999998665 2677666665443 355423356777888999998
Q ss_pred HHHHhHhhhccCChHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHH-HHHHHHhhCCCC
Q psy15255 119 VARNLIDDAGNNLWPEFLQFLFQCANSD--------NTTLKESALRLFTSVPEIFGNQ-ESTYLVVI-KQMLQQCLLPPN 188 (199)
Q Consensus 119 i~~~~~~~~~~~~~~~ll~~l~~~~~~~--------~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l-~~~l~~~l~d~~ 188 (199)
++..-.- .....++++|.+.+++.-+ ...||.+||.+.-++.....++ +.|+...| ...+..++=|+
T Consensus 407 LA~rGlL--lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr- 483 (1133)
T KOG1943|consen 407 LALRGLL--LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR- 483 (1133)
T ss_pred HHhcCCc--chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-
Confidence 8864321 1234578999999888622 4569999999999998766554 78887755 55667777887
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
+..+|.+|.
T Consensus 484 evncRRAAs 492 (1133)
T KOG1943|consen 484 EVNCRRAAS 492 (1133)
T ss_pred hhhHhHHHH
Confidence 888887763
|
|
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.013 Score=54.38 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
--..+-..++--+++ +-..||++++..+|.++... ++..+-++... ++..+...+++..-+.-..+++.|
T Consensus 171 fh~~il~~l~~ql~s-~R~aVrKkai~~l~~la~~~----~~~ly~~li~~-----Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 171 FHLSILKCLLPQLQS-PRLAVRKKAITALGHLASSC----NRDLYVELIEH-----LLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred hHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHHHhc----CHHHHHHHHHH-----HHhccCCCCchHHHHHHHHHHHHH
Confidence 444555556666676 78899999999999998664 24556666665 555666445555555556888888
Q ss_pred HHHhHhhhccCChHHHHHHHHHHh---cCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhC
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCA---NSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLL 185 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~---~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~ 185 (199)
+..... ....+.+.+.|++.+-. +..+-..|+..++++..|....++++.+|.+.|++.+...+.
T Consensus 241 ~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 241 CRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYIS 308 (1233)
T ss_pred HHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhc
Confidence 876542 23578899999999988 555778999999999999999999999999999888876654
|
|
| >PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0086 Score=44.91 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDND-NIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQT-CDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~-~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~-~~~~~vr~~a~~~i~~i~ 120 (199)
.||..|+.+|..+..+ ..-+..|++++.++-+.+. ..++.|+||.. ++.+ ..+.. .+|..+...+-
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~-~~~~~W~eL~d---------~Ils~~~~e~--~kA~~IF~~L~ 70 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFD-LQEGGWDELSD---------CILSLSENEP--VKAFHIFICLP 70 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHh-cCCCCchhHHH---------HHHHhhccch--HHHHHHHHhCC
Confidence 4788999999997654 5678889999999988863 23799999975 3321 11112 23445554444
Q ss_pred HHhHhhhccCChHHHHHHHHHHhcCC---CHHHHHHHHHH-HHhhhHhhh
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCANSD---NTTLKESALRL-FTSVPEIFG 166 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~-l~~i~e~~~ 166 (199)
..+.+++..+....|+|.+.+.+.+| +......|+.. +......++
T Consensus 71 ~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e 120 (174)
T PF04510_consen 71 MPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLE 120 (174)
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhc
Confidence 23334455567888999999999887 33333445532 333444443
|
Many of these members contain a repeated region. |
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.02 Score=51.70 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHH
Q psy15255 11 VEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQN 90 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~ 90 (199)
+.+|-=|-.+|=+.+- +-|+..|..+. .|-+-|.| |++.|-.++-.+|.+|||..- ..+=+|.|.
T Consensus 158 pYvRKkAIl~lykvFL--------kYPeAlr~~Fp-rL~EkLeD-pDp~V~SAAV~VICELArKnP-----knyL~LAP~ 222 (877)
T KOG1059|consen 158 PYVRKKAILLLYKVFL--------KYPEALRPCFP-RLVEKLED-PDPSVVSAAVSVICELARKNP-----QNYLQLAPL 222 (877)
T ss_pred hHHHHHHHHHHHHHHH--------hhhHhHhhhHH-HHHHhccC-CCchHHHHHHHHHHHHHhhCC-----cccccccHH
Confidence 4455555444444432 22333333333 25566788 999999999999999999872 222223222
Q ss_pred HHHH-----------HHHHHHhh--cccHHHHH-----------------HHHHHHHHHHHHhHhhhccCChH---HHHH
Q psy15255 91 NLKS-----------QIILLLQT--CDNDNIRR-----------------KICDAAAEVARNLIDDAGNNLWP---EFLQ 137 (199)
Q Consensus 91 ~ik~-----------~ll~~l~~--~~~~~vr~-----------------~a~~~i~~i~~~~~~~~~~~~~~---~ll~ 137 (199)
..|- .++++|.. --.|..+. ...+|+..+...-+..++.++-. --++
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvq 302 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQ 302 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHH
Confidence 2221 13333330 11222222 22334433332211111112322 2344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 138 FLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-|--.+.|.|+..++.++-+++.|....++....|.+.| ..||.|. |+.||+.|+.
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlI----lrcL~Dk-D~SIRlrALd 358 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLI----LRCLDDK-DESIRLRALD 358 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHH----HHHhccC-CchhHHHHHH
Confidence 555566789999999999999999988777666665554 5588897 9999998863
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=51.80 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
..+..|--||--|.|..+...+. ...+.+. ..--.+.+++.+ ++..||.++.-++|.+|..- |.+-
T Consensus 122 ~~~~lq~eAAWaLTnIAsgtse~-T~~vv~a---gavp~fi~Ll~s-~~~~v~eQavWALgNIagds---------~~~R 187 (514)
T KOG0166|consen 122 DNPTLQFEAAWALTNIASGTSEQ-TKVVVDA---GAVPIFIQLLSS-PSADVREQAVWALGNIAGDS---------PDCR 187 (514)
T ss_pred CChhHHHHHHHHHHHHhcCchhh-ccccccC---CchHHHHHHhcC-CcHHHHHHHHHHHhccccCC---------hHHH
Confidence 44677777888888877654111 1111110 111227788888 99999999999998887332 2322
Q ss_pred HHHHH----HHHHHHHhhcccH-HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLK----SQIILLLQTCDND-NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~-~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
...++ ..|+.++. .+.+ ...+.+.=++..+.+.--+...-.....++|.|..++.+.|+.|..-|+-+++++..
T Consensus 188 d~vl~~g~l~pLl~~l~-~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLN-KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHhhcchHHHHHHhc-cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 22121 12556666 3333 455555666666665431100013445799999999999999999999999999987
Q ss_pred hhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 164 IFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 164 ~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-.+...-.+ ..+++.+..+++.+ ++.|+..|++
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLR 301 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALR 301 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCC-CcccccHHHh
Confidence 7665543333 36778888899997 8888876653
|
|
| >PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=44.01 Aligned_cols=96 Identities=18% Similarity=0.365 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh-HhhhhhhH
Q psy15255 93 KSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP-EIFGNQES 170 (199)
Q Consensus 93 k~~ll~~l~~~~-~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~-e~~~~~l~ 170 (199)
|.-|+.|+..+. ..+.-+..+++++.++..+.. ...+.|++|...+.... .+++ +.|+.+|..+. ...++-+.
T Consensus 5 kplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~-~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 5 KPLLISCLTMQETKESDFKILRRIVSHVAYEVFD-LQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred HHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHHH
Confidence 445777887332 233444456777777776643 23589999998887765 2233 56899999998 55444478
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
++++.+.+.+...+.+|++.++.
T Consensus 80 ~~~~~L~~~~~~~L~~p~~~d~~ 102 (174)
T PF04510_consen 80 PFMENLLPEISKVLLPPEEVDVE 102 (174)
T ss_pred HHHHHHHHHHHHHcCCchhccHH
Confidence 99999999999999998655553
|
Many of these members contain a repeated region. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.03 Score=48.25 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH--------------------HH---HHH-----
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ--------------------NN---LKS----- 94 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~--------------------~~---ik~----- 94 (199)
.+.+.+++...+.+++..|..++..++.++....+.+ ...+++. .+ .|+
T Consensus 189 ~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 189 ELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 4677777777777889999999999999998732211 1112211 11 121
Q ss_pred ---------HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc-------------cCChHHHHHHHHHHhcCCCHHHHH
Q psy15255 95 ---------QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-------------NNLWPEFLQFLFQCANSDNTTLKE 152 (199)
Q Consensus 95 ---------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~-------------~~~~~~ll~~l~~~~~~~~~~vr~ 152 (199)
.++.++. + +.+...+++....+.....+ .. .+.+..++|.+.+...+.+...|.
T Consensus 266 ~~~~~~~~~~L~~lL~-~--~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 266 HPLATELLDKLLELLS-S--PELGQQAAKAFGILLSDSDD-VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred CchHHHHHHHHHHHhC-C--hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence 2555554 2 55566666666555543211 11 134478899999999887777899
Q ss_pred HHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 153 SALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 153 ~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-+.+++.+...++.. +.++.+.|.+++.+++.-+ |++|+..+++
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~ 387 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLE 387 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999988 5789999999999999887 8899988763
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0021 Score=56.28 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+...+++-++.|+.|++.++|..||..+..++.........|.+.|...+....+|+ |..||-.|
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs-d~~V~~~a 145 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS-DQNVRGGA 145 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC-ccccccHH
Confidence 3677888889999999999999999999999999887778889999999999999998 88898655
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0038 Score=47.60 Aligned_cols=137 Identities=11% Similarity=0.148 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHhhcCcCCCCChHHHHHHH------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh------hh
Q psy15255 60 IRRKICDAAAEVARNLIDDAGNNLWPEFLQNN------LKSQIILLLQTCDNDNIRRKICDAAAEVARNLID------DA 127 (199)
Q Consensus 60 vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~------ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~------~~ 127 (199)
||..+-.++..+++..-+..-.+-|+.++|.- -...|+.++-.|+++.+|..|+.++..+....-+ +.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 67788888888888854555568899998875 1224777777799999999999999888765421 00
Q ss_pred c-c------------CChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh-h-HHHHHHHHHHHHHhhCCCCCHH
Q psy15255 128 G-N------------NLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ-E-STYLVVIKQMLQQCLLPPNPYS 191 (199)
Q Consensus 128 ~-~------------~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~-l-~~~~~~l~~~l~~~l~d~~~~~ 191 (199)
. . .-.-++...|...++.+ ++.+-...++++..+++..+-+ + ......++.-+...+.+. |++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~ 160 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPN 160 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCc
Confidence 0 0 12245666777777755 7777778899998888765432 3 344555555555555665 777
Q ss_pred Hhhhhh
Q psy15255 192 VQALQL 197 (199)
Q Consensus 192 Vr~~A~ 197 (199)
|+.+++
T Consensus 161 v~v~~l 166 (182)
T PF13251_consen 161 VRVAAL 166 (182)
T ss_pred HHHHHH
Confidence 887663
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.012 Score=54.20 Aligned_cols=91 Identities=9% Similarity=-0.089 Sum_probs=65.7
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+.+=+. ++++.+|-.|..+++.|-. ..-.+.+.+.+.+++.|++|-||.+|..++.++....++.... ..
T Consensus 110 l~KDl~-d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~ 179 (746)
T PTZ00429 110 FLQDTT-NSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QD 179 (746)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cc
Confidence 334444 7889999998888876432 1355778899999999999999999999999987765433211 12
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+..++.|+ |+.|...|+
T Consensus 180 ~~~~L~~LL~D~-dp~Vv~nAl 200 (746)
T PTZ00429 180 FKKDLVELLNDN-NPVVASNAA 200 (746)
T ss_pred hHHHHHHHhcCC-CccHHHHHH
Confidence 333445567887 999988775
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0082 Score=49.37 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=74.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-H----
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-S---- 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~---- 170 (199)
++.+++ .+++.+|..|.+|++-++- .+ ...-.+.++.+.+.++.++..+|..|++++..+.-..+... .
T Consensus 32 I~P~v~-~~~~~vR~~al~cLGl~~L--ld---~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 32 ILPAVQ-SSDPAVRELALKCLGLCCL--LD---KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHH--hC---hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 446777 7888999999999986553 32 23446778888888877799999999999999987766442 2
Q ss_pred ----HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 171 ----TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 171 ----~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.....+..++...+.+. ++++|..|++
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~E 136 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSE-NPELQAIAVE 136 (298)
T ss_pred cCccchHhHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 12457888999999996 9999988874
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0076 Score=54.62 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHH----HHHHHh---hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHH
Q psy15255 84 WPEFLQNNLKSQ----IILLLQ---TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESAL 155 (199)
Q Consensus 84 WpeLl~~~ik~~----ll~~l~---~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~ 155 (199)
=.|++..+.|+. ++..+. .+.++-||+..+.+.+.+++.+ ..|+|+|+|-..+.+. ||+-|.+++
T Consensus 461 greIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal-------gip~llpfLkavc~SkkSwqaRhTgI 533 (1172)
T KOG0213|consen 461 GREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL-------GIPALLPFLKAVCGSKKSWQARHTGI 533 (1172)
T ss_pred hHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHhccccchhhhchhh
Confidence 345556666653 233332 2335668888888888777654 5799999999999887 999999999
Q ss_pred HHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 156 RLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 156 ~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
++...|+...+....+|...++.++..++.|. ...||.-
T Consensus 534 kivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~i 572 (1172)
T KOG0213|consen 534 KIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTI 572 (1172)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhH
Confidence 99999999999988899999999999999996 8888853
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.012 Score=53.90 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=75.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
...||++.--.+ +.+++=++ ++++-+|.-|..+++.+-. ..-|+.+++.+.+++.|+++.||..|.-++.+
T Consensus 83 ak~~P~~~lLav-Nti~kDl~-d~N~~iR~~AlR~ls~l~~-------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~k 153 (757)
T COG5096 83 AKLKPELALLAV-NTIQKDLQ-DPNEEIRGFALRTLSLLRV-------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAK 153 (757)
T ss_pred hccCHHHHHHHH-HHHHhhcc-CCCHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 567777632111 22445566 8999999998888765332 35789999999999999999999999999999
Q ss_pred hhHhhhhhhHHHHHH-HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 161 VPEIFGNQESTYLVV-IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 161 i~e~~~~~l~~~~~~-l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.-.+ + +.+. ....+...+.|+ ||.|-..|+
T Consensus 154 ly~ld~~-l--~~~~g~~~~l~~l~~D~-dP~Vi~nAl 187 (757)
T COG5096 154 LYRLDKD-L--YHELGLIDILKELVADS-DPIVIANAL 187 (757)
T ss_pred HHhcCHh-h--hhcccHHHHHHHHhhCC-CchHHHHHH
Confidence 8765332 2 2233 566667777887 999887775
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.016 Score=49.91 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-..++..|.+ +++.||..++...|.+ .+|+..+. |+.++. +.++.+|..+...+.. .
T Consensus 88 ~~~L~~~L~d-~~~~vr~aaa~ALg~i-----------~~~~a~~~-----L~~~L~-~~~p~vR~aal~al~~---r-- 144 (410)
T TIGR02270 88 LRSVLAVLQA-GPEGLCAGIQAALGWL-----------GGRQAEPW-----LEPLLA-ASEPPGRAIGLAALGA---H-- 144 (410)
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHhcC-----------CchHHHHH-----HHHHhc-CCChHHHHHHHHHHHh---h--
Confidence 4567777777 6777888777777644 23343333 445666 7888888776544432 0
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
... -.+.+...++|+|+.||..|+++++.+...- ..+ .+...++|. |+.||..|+
T Consensus 145 ---~~~----~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~------a~~----~L~~al~d~-~~~VR~aA~ 199 (410)
T TIGR02270 145 ---RHD----PGPALEAALTHEDALVRAAALRALGELPRRL------SES----TLRLYLRDS-DPEVRFAAL 199 (410)
T ss_pred ---ccC----hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc------chH----HHHHHHcCC-CHHHHHHHH
Confidence 011 2345566677999999999999999865321 111 133457886 999998775
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.035 Score=50.63 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=90.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHH--------------------------------
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQ-------------------------------- 95 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~-------------------------------- 95 (199)
|.+.|.+..+...+-++=..+|.+|+. ..-.++.|..+|+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G-------~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKG-------KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHH
Confidence 555666656666677777777777743 12455566666652
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+.+.+. ++++-+|-.|+.++..|=... --|-++-.+.+++.|+++.||..|.-|+-++-..-.+ +.+.
T Consensus 113 fQk~L~-DpN~LiRasALRvlSsIRvp~-------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e----~k~q 180 (968)
T KOG1060|consen 113 FQKALK-DPNQLIRASALRVLSSIRVPM-------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE----QKDQ 180 (968)
T ss_pred HHhhhc-CCcHHHHHHHHHHHHhcchhh-------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh----hHHH
Confidence 555566 899999999999887654332 2367788889999999999999999999887654322 2347
Q ss_pred HHHHHHHhhCCCCCHHHhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A 196 (199)
+...+...|.|. ++-|.-.|
T Consensus 181 L~e~I~~LLaD~-splVvgsA 200 (968)
T KOG1060|consen 181 LEEVIKKLLADR-SPLVVGSA 200 (968)
T ss_pred HHHHHHHHhcCC-CCcchhHH
Confidence 777888888896 77766444
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0085 Score=48.21 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
+.|+..|....+|.++.++..+.+..+..-.. ...+.++ ++ .+..++. ++++.+|.+|+.++..++...
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n---q~~Ir~~Ggi~-----lI~~lL~-~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFN---QDIIRDLGGIS-----LIGSLLN-DPNPSVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhH---HHHHHHcCCHH-----HHHHHcC-CCChHHHHHHHHHHHhcCCCh
Confidence 46888999878999999888888876543211 1222222 22 1444566 899999999999988776533
Q ss_pred HhhhccCChHHHHHHHHHHhcC-C-CHHHHHHHHHHHHhhhHhhh-hh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 124 IDDAGNNLWPEFLQFLFQCANS-D-NTTLKESALRLFTSVPEIFG-NQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~~-~-~~~vr~~a~~~l~~i~e~~~-~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.. .......++.+.+.+.+ + +..++.+|++++..+.-.-+ .. +..+ ++ .+...+..+ +..+|..+++
T Consensus 86 en---~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~---i~-~ll~LL~~G-~~~~k~~vLk 156 (254)
T PF04826_consen 86 EN---QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY---IP-DLLSLLSSG-SEKTKVQVLK 156 (254)
T ss_pred hh---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh---HH-HHHHHHHcC-ChHHHHHHHH
Confidence 21 23344556666665443 3 67889999999999852211 11 2232 33 334566665 7778777664
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.015 Score=44.36 Aligned_cols=152 Identities=12% Similarity=0.148 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhcch-h---hHhhhhccCHhh---HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhc---C--cCC
Q psy15255 13 ERQMSAVLLRKIFST-D---FIEIYSKLAVND---QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI---D--DAG 80 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~-~---~~~~~~~l~~~~---~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l---~--~~~ 80 (199)
+|+.|-.+|.-.++. + .-..|..+=|+. ...-...|+..+-..|++.+|..++++++.++...= . ++.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 688888877766544 2 245576654444 233333445554444999999999999999986640 0 001
Q ss_pred CCChHHH------HHHHH---HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHH
Q psy15255 81 NNLWPEF------LQNNL---KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTL 150 (199)
Q Consensus 81 ~~~WpeL------l~~~i---k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~v 150 (199)
...+..+ +-..+ ...|+..++.|.+..+-...++|+..+....+=.. ..+..++++..+...+.+.|+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1122222 11122 34588888888888888888888887776543111 12456777777777788899999
Q ss_pred HHHHHHHHHhhhHh
Q psy15255 151 KESALRLFTSVPEI 164 (199)
Q Consensus 151 r~~a~~~l~~i~e~ 164 (199)
|.+++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988754
|
|
| >KOG1949|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.021 Score=51.50 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH---HHHHHHhhcccHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS---QIILLLQTCDNDNIRRKICDAAAE 118 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~---~ll~~l~~~~~~~vr~~a~~~i~~ 118 (199)
...+-.+..+|+. ++..||.. ++.+.-+.++-.+.+.-.|-...++.. .+..++. ++-+.||..|..-++.
T Consensus 173 rL~~p~l~R~L~a-~Ns~Vrsn----Aa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~-d~~p~VRS~a~~gv~k 246 (1005)
T KOG1949|consen 173 RLYKPILWRGLKA-RNSEVRSN----AALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE-DPYPMVRSTAILGVCK 246 (1005)
T ss_pred HHHhHHHHHhhcc-Cchhhhhh----HHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHH
Confidence 4556678888888 99999996 555666666654444444444444432 3566677 8999999998887777
Q ss_pred HHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 119 VARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 119 i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+.+-....-.-+++.-++.-+. |+...||.+.+..+..++..= .--+....+++.+...|+|+ ++.||++++
T Consensus 247 ~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~-se~VRvA~v 323 (1005)
T KOG1949|consen 247 ITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDN-SEKVRVAFV 323 (1005)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhcc-chhHHHHHH
Confidence 76655431112334556666666554 567789999998888776431 12345566777888999997 999999876
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.045 Score=48.46 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHH--HHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRR--KICDAAAEVAR 121 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~--~a~~~i~~i~~ 121 (199)
+.-.++...+| ..+.||+.+-.++=.+.+.+-. ..-+.++|.++. .+. +. ..|. .+++.++.++.
T Consensus 217 ~lp~il~~~~d-~~~~Vr~Aa~~a~kai~~~~~~----~aVK~llpsll~-----~l~-~~--kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 217 ILPSILTNFGD-KINKVREAAVEAAKAIMRCLSA----YAVKLLLPSLLG-----SLL-EA--KWRTKMASLELLGAMAD 283 (569)
T ss_pred hHHHHHHHhhc-cchhhhHHHHHHHHHHHHhcCc----chhhHhhhhhHH-----HHH-HH--hhhhHHHHHHHHHHHHH
Confidence 34445555556 7788998877777666655422 333445554222 222 11 2332 34455554443
Q ss_pred HhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
.-+ .......|+++|.+.+.+.|..+.+|++|..++-.+++..+.. .+..+++.+..|++||
T Consensus 284 ~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~---dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 284 CAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP---DIQKIIPTLLDALADP 345 (569)
T ss_pred hch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHhcCc
Confidence 332 2233578999999999999999999999999999999987654 3556677777899998
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.17 Score=41.87 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC-cCCCCChHHHHH
Q psy15255 11 VEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPEFLQ 89 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~-~~~~~~WpeLl~ 89 (199)
...|..|---+.+.+..+. ....-...+..+-..++..++... ..=+.-++.+++.++-.+=. ......+.++.|
T Consensus 57 ~~~Re~aL~~l~~~l~~~~---~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~ 132 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRY---LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSEEIFEELKP 132 (309)
T ss_pred HHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence 5677777766777665541 011223556778888999998843 34456677788887755421 112344455555
Q ss_pred HHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhHhhhccCChH---HHHHHHHHHh--c-C---------CCHHHHHH
Q psy15255 90 NNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWP---EFLQFLFQCA--N-S---------DNTTLKES 153 (199)
Q Consensus 90 ~~ik~~ll~~l~-~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~---~ll~~l~~~~--~-~---------~~~~vr~~ 153 (199)
. |...+. ...+..+|..++.+++.+.- +.. .+..... +.+..+|... + + +++.+..+
T Consensus 133 ~-----L~~~l~d~s~~~~~R~~~~~aLai~~f-v~~-~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 133 V-----LKRILTDSSASPKARAACLEALAICTF-VGG-SDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred H-----HHHHHhCCccchHHHHHHHHHHHHHHH-hhc-CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 4 334555 22345567777777665442 221 1122233 4455444432 1 1 13678999
Q ss_pred HHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 154 ALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 154 a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|+.+-+-++..++.. +..+....++.|...+.++ |.+||.+|-+
T Consensus 206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGE 250 (309)
T PF05004_consen 206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGE 250 (309)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 999999999888764 5566677778888899997 9999998853
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0095 Score=43.16 Aligned_cols=86 Identities=27% Similarity=0.347 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----h------------hH
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----Q------------ES 170 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----~------------l~ 170 (199)
-++.+.+.+++.|+....+ ..||++++-+++.+++ ++.....+++++..+.|.+.+ . +.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P----~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWP----QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCh----hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 4788889999999987754 6899999999999987 578888999999999987753 0 12
Q ss_pred HHHHHHHHHHHHhhCCCCC---HHHhhhhh
Q psy15255 171 TYLVVIKQMLQQCLLPPNP---YSVQALQL 197 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~---~~Vr~~A~ 197 (199)
...+.+..++.+++....+ +++...++
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L 107 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAAL 107 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3455666677666665311 45554443
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=57.09 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=73.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++..++ ++...+|.+|..|++.|+...+. .-.-|+....+.+-+.|.+..||++|+..+|.++-..++. ...
T Consensus 821 Il~~l~-e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~----~~q 892 (1692)
T KOG1020|consen 821 ILSVLG-ENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL----IFQ 892 (1692)
T ss_pred HHHHhc-CchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH----HHH
Confidence 666777 89999999999999999875443 3456888889999999999999999999999988765543 334
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...++.....|+ ...||.-++|
T Consensus 893 yY~~i~erIlDt-gvsVRKRvIK 914 (1692)
T KOG1020|consen 893 YYDQIIERILDT-GVSVRKRVIK 914 (1692)
T ss_pred HHHHHHhhcCCC-chhHHHHHHH
Confidence 445555666776 7888877654
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=52.77 Aligned_cols=111 Identities=11% Similarity=0.177 Sum_probs=65.2
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhHhhhhc-----cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhc
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSK-----LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 76 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~-----l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l 76 (199)
+++.+.+.++.+|+.|++-+||.+... |.. .+++.+..+|..|.+.+.+
T Consensus 42 ~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~~i~~Dek~e~K~~lienil~---------------------- 95 (970)
T COG5656 42 HICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDDGIKADEKSEAKKYLIENILD---------------------- 95 (970)
T ss_pred HHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccCCCCCcccHHHHHHHHHHHHH----------------------
Confidence 445555678999999999999999888 544 3334444444444444443
Q ss_pred CcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 77 DDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 77 ~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
.+ ..++.+-+.+..++..+.- -++.....|+ +.|.....+.+++..+-..|+-
T Consensus 96 ----------------------v~--l~sp~~tr~~l~ail~~I~--seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLl 148 (970)
T COG5656 96 ----------------------VF--LYSPEVTRTALNAILVNIF--SEDKPSDLWG-LFPKAANLLRSSEANHVYTGLL 148 (970)
T ss_pred ----------------------HH--hcCCchHHHHHHHHHHHhc--cccCchhhcc-cchHHHHhhcccchhHHHHHHH
Confidence 00 1111222222222222111 1122346777 8888888888888888888888
Q ss_pred HHHhhhHhh
Q psy15255 157 LFTSVPEIF 165 (199)
Q Consensus 157 ~l~~i~e~~ 165 (199)
++..++...
T Consensus 149 cl~elfkay 157 (970)
T COG5656 149 CLEELFKAY 157 (970)
T ss_pred HHHHHHHHH
Confidence 888877543
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.078 Score=48.87 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
+.+++|..+-.+||..+.+. .+-+-.....+-...+..|++++ +-|=-.+-+.+.-|... ++ .+.-|.+.
T Consensus 739 ~qvpik~~gL~~l~~l~e~r-----~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcev-y~---e~il~dL~ 808 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKR-----KKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEV-YP---EDILPDLS 808 (982)
T ss_pred CcccchHHHHHHHHHHHHhc-----chhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHh-cc---hhhHHHHH
Confidence 44678988888999988653 22334455678888999999944 43333333333333221 12 34444443
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
..|-. ....+.+..|.+.++++..++....+ ...++..-|+..+..++.+|+...|-++|..++.+|....-.
T Consensus 809 e~Y~s------~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 809 EEYLS------EKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHh------cccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 32110 00012245677888999998877654 223677789999999999999999999999999999887654
Q ss_pred hHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 169 ESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 169 l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...+ .+.+..++.-...|+ ++-||-+|+
T Consensus 882 vsd~~~ev~~~Il~l~~~d~-s~~vRRaAv 910 (982)
T KOG4653|consen 882 VSDFFHEVLQLILSLETTDG-SVLVRRAAV 910 (982)
T ss_pred hhHHHHHHHHHHHHHHccCC-chhhHHHHH
Confidence 4333 344444444445566 888998886
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.062 Score=44.74 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=75.5
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD- 126 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~- 126 (199)
++..+.+ ++..+|..+++++|..+.|.-+. -..++..-..+.|+..+..+++..+|.+|+..++.+++...+.
T Consensus 129 ll~~l~~-~~~~lR~~Aa~Vigt~~qNNP~~-----Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 129 LLGYLEN-SDAELRELAARVIGTAVQNNPKS-----QEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred HHHHhcC-CcHHHHHHHHHHHHHHHhcCHHH-----HHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 4456777 99999999999999999887331 1111111123347778887788889999999999888876541
Q ss_pred --hc-cCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhhHhhhh
Q psy15255 127 --AG-NNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 127 --~~-~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
+. .+.| .+|...+++ .+...+.-++..+..+.+....
T Consensus 203 ~~fl~~~G~----~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 203 DEFLKLNGY----QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHhcCCH----HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 11 1233 455666666 4777888899999998865443
|
|
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.12 Score=50.26 Aligned_cols=137 Identities=11% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH-HHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ-NNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~-~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
..+-..++..|+ |+...+|+++-.+++.++..- |.++. --++..+-.=+ ++++.+||..|++.++...
T Consensus 815 D~yLk~Il~~l~-e~~ialRtkAlKclS~ive~D---------p~vL~~~dvq~~Vh~R~-~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 815 DPYLKLILSVLG-ENAIALRTKALKCLSMIVEAD---------PSVLSRPDVQEAVHGRL-NDSSASVREAALDLVGRFV 883 (1692)
T ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcC---------hHhhcCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhh
Confidence 344556777888 599999999999999997432 33310 00011111112 3889999999999998766
Q ss_pred HHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.... ...+++...+...+.|+...||..+++++..+|+..++ +....+....|+. -..|. +..|+..++
T Consensus 884 l~~~-----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakmlr-Rv~DE-Eg~I~kLv~ 952 (1692)
T KOG1020|consen 884 LSIP-----ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKMLR-RVNDE-EGNIKKLVR 952 (1692)
T ss_pred hccH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHH-Hhccc-hhHHHHHHH
Confidence 5443 36778888888888999999999999999999998754 3333334444444 44564 555766555
|
|
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.026 Score=51.39 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=81.0
Q ss_pred hhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHH
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKI 112 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a 112 (199)
+..++..-.+.=--.+|..|+. .++...-..+++.+.++++-=.. .|.=..++-..|+ -.+.-.++...|-.|
T Consensus 242 v~gi~dPFLQi~iLrlLriLGq-~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~----TI~~I~~~~~Lrvla 314 (866)
T KOG1062|consen 242 VHGISDPFLQIRILRLLRILGQ-NDADASDLMNDILAQVATNTDSS--KNAGNAILYECVR----TIMDIRSNSGLRVLA 314 (866)
T ss_pred ccCCCchHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHH----HHHhccCCchHHHHH
Confidence 3345443333222347888998 89999999999999999886322 1111122111111 122235667778888
Q ss_pred HHHHHHHHHHhHhhhcc-CChHH--------------HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 113 CDAAAEVARNLIDDAGN-NLWPE--------------FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~-~~~~~--------------ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.++++.+...- +.... -..+. =-.++..|++|+|..+|.-|++....+... .++......++
T Consensus 315 iniLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl 391 (866)
T KOG1062|consen 315 INILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELL 391 (866)
T ss_pred HHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 77777655321 10000 01122 234678899999999999999988777654 23444455555
Q ss_pred HHHHHh
Q psy15255 178 QMLQQC 183 (199)
Q Consensus 178 ~~l~~~ 183 (199)
.++-.+
T Consensus 392 ~fL~~~ 397 (866)
T KOG1062|consen 392 EFLESS 397 (866)
T ss_pred HHHHhc
Confidence 555544
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.041 Score=41.91 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=67.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh---hHhhhhhhHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV---PEIFGNQESTY 172 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i---~e~~~~~l~~~ 172 (199)
++.++. |.....|..|.+.+.+++..-..+......|.|++-+-+++++.++.+...++.++..+ .+.+++.+.||
T Consensus 43 f~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 43 FFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 556777 77777777777777777765221122356789999999999999999999999999999 77888889999
Q ss_pred HHHHHHHHH
Q psy15255 173 LVVIKQMLQ 181 (199)
Q Consensus 173 ~~~l~~~l~ 181 (199)
...|.+.+.
T Consensus 122 yrqLLp~ln 130 (183)
T PF10274_consen 122 YRQLLPVLN 130 (183)
T ss_pred HHHHHHHHH
Confidence 999988887
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.14 Score=46.99 Aligned_cols=114 Identities=20% Similarity=0.171 Sum_probs=83.1
Q ss_pred hhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH
Q psy15255 32 IYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 32 ~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~ 111 (199)
.|.+..|+.---.-+.+.+=+++ +++.+|..+-++.+.+ +....|+.+.+. +.+++. ++++-||+.
T Consensus 81 ~yak~~P~~~lLavNti~kDl~d-~N~~iR~~AlR~ls~l-------~~~el~~~~~~~-----ik~~l~-d~~ayVRk~ 146 (757)
T COG5096 81 RYAKLKPELALLAVNTIQKDLQD-PNEEIRGFALRTLSLL-------RVKELLGNIIDP-----IKKLLT-DPHAYVRKT 146 (757)
T ss_pred HHhccCHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHhc-------ChHHHHHHHHHH-----HHHHcc-CCcHHHHHH
Confidence 35666666555666778888888 9999999877777655 224556666554 556777 999999999
Q ss_pred HHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 112 ICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 112 a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|.-++..+.+...+ ..++ +.-.+..++.|+||.+...|+.++..+.+.
T Consensus 147 Aalav~kly~ld~~-----l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 147 AALAVAKLYRLDKD-----LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHhcCHh-----hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999887754322 2222 455566677899999999999999988766
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.11 Score=45.06 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....++..+.+-..||+..+|..|++.++..++..+++...|...++..+..++-|+.+.+|..+|++
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~ 322 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMK 322 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 344566667777777899999999999999999998888888877777776667677668899998864
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.034 Score=48.16 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=72.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHH
Q psy15255 102 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQM 179 (199)
Q Consensus 102 ~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~ 179 (199)
.+++..+|+.++.+++..+...++ .-..+-+.++..+...+-|+ +..|...|+.++..+.+..... +.+|.-.+.--
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~-kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPD-KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcH-HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 577888999999999998876443 33467788888888888765 7889999999999999887644 66666566556
Q ss_pred HHHhhCCCCCHHHhhhhh
Q psy15255 180 LQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 180 l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+.|. ++++|.+|+
T Consensus 347 lR~l~~se-~~~~R~aa~ 363 (533)
T KOG2032|consen 347 LRTLFDSE-DDKMRAAAF 363 (533)
T ss_pred HHHHHHhc-ChhhhhhHH
Confidence 66676774 999999885
|
|
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.3 Score=42.26 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHh--hcccHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQ--TCDNDNIRRKICDAA 116 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~--~~~~~~vr~~a~~~i 116 (199)
+..+.|...+++.|++..+...|.-+-.++.+++++--.. -....|+ .+.+.++ .++++.+-..|.+..
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~-------ai~K~Leaa~ds~~~v~~~Aeed~ 395 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEI-------AICKVLEAAKDSQDEVMRVAEEDC 395 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHH-------HHHHHHHHHhCCchhHHHHHHHHH
Confidence 3456677788999999666666766667777776553110 1111222 1223443 255666666666665
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
..++....+ ....-.+-|.+ ...|...-.++++.+..+++.+..+ +.+..+.|.+.+.++.++. +..||..
T Consensus 396 ~~~las~~P---~~~I~~i~~~I----lt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKt 467 (516)
T KOG2956|consen 396 LTTLASHLP---LQCIVNISPLI----LTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKT 467 (516)
T ss_pred HHHHHhhCc---hhHHHHHhhHH----hcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhh
Confidence 555443322 12333344443 3355566678888999999998866 6778888988899999997 8899998
Q ss_pred hh
Q psy15255 196 QL 197 (199)
Q Consensus 196 A~ 197 (199)
|+
T Consensus 468 aV 469 (516)
T KOG2956|consen 468 AV 469 (516)
T ss_pred HH
Confidence 75
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.02 Score=50.98 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
+.++-||+..+.+++.+++.+ ..++++|++-..+.+. +|+-|.++.++...|++.++....+|...++..+.
T Consensus 292 ~~deYVRnvt~ra~~vva~al-------gv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADAL-------GVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhh-------CcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 345678888777777777654 5689999999988876 99999999999999999999888899999999999
Q ss_pred HhhCCCCCHHHhhhh
Q psy15255 182 QCLLPPNPYSVQALQ 196 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~A 196 (199)
.++.|. +.-||..+
T Consensus 365 ~~l~D~-~~~vRi~t 378 (975)
T COG5181 365 KLLKDR-SRFVRIDT 378 (975)
T ss_pred HHhhcc-ceeeeehh
Confidence 999996 77787543
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.043 Score=38.86 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=48.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
|+.++..+.++.+-.-||.-|++++...+. |...+. .....+++++.++|+.||..|+.++..++-
T Consensus 48 L~~lL~~s~d~~~laVac~Dig~~vr~~p~--gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 48 LIKLLDKSDDPTTLAVACHDIGEFVRHYPN--GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHH-GG--GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcceeehhhcchHHHHHHChh--HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 566775455667777789999999988754 333333 367788999999999999999999998764
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.17 Score=45.13 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.++++..+| -++.++. .++..||.+.+++++.+....-+. .....+.|+..+..-+-|..+.||..|+.+++++-+.
T Consensus 86 ~~~V~~~~~-h~lRg~e-skdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 86 EELVAGTFY-HLLRGTE-SKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHHHHHHH-HHHhccc-CcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 445443332 1444555 788999999999998877655321 1234566777888888888999999999999998765
Q ss_pred hhhhhHHHHHHHHHHHHHhhC-CCCCHHHhhhhh
Q psy15255 165 FGNQESTYLVVIKQMLQQCLL-PPNPYSVQALQL 197 (199)
Q Consensus 165 ~~~~l~~~~~~l~~~l~~~l~-d~~~~~Vr~~A~ 197 (199)
-.+. -+.+...+...+| || +.+||..|+
T Consensus 163 ~~ne----en~~~n~l~~~vqnDP-S~EVRr~al 191 (885)
T COG5218 163 ELNE----ENRIVNLLKDIVQNDP-SDEVRRLAL 191 (885)
T ss_pred cCCh----HHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 4332 1333334444444 66 889998875
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.63 Score=38.58 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+...+.+...+.+++..+|..|..+++.+.... ..+...+...+.|+ +..||..++
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~~vr~~~~ 234 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SLEVRKAAL 234 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CHHHHHHHH
Confidence 445556666666666677777777776655442 23445556666776 777776654
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.26 Score=48.22 Aligned_cols=156 Identities=14% Similarity=0.198 Sum_probs=103.8
Q ss_pred HhhhhccCHhhH-------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHh-
Q psy15255 30 IEIYSKLAVNDQ-------NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQ- 101 (199)
Q Consensus 30 ~~~~~~l~~~~~-------~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~- 101 (199)
..+|+.+-++.+ +.|-..||-.+.+ ..=.||...|-+.+.|++.-=-......-||+.-+ ++....
T Consensus 1019 ~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~-----~fRvmDD 1092 (1702)
T KOG0915|consen 1019 TSIWNALITDSKKVVDEYLNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEA-----AFRVMDD 1092 (1702)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-----HHHHHHH
Confidence 789998877654 3455566666666 67789999999999998653110112333444433 222332
Q ss_pred -hcccHHHHHHHHHHHHHHHHHhHhhh----ccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 102 -TCDNDNIRRKICDAAAEVARNLIDDA----GNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 102 -~~~~~~vr~~a~~~i~~i~~~~~~~~----~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
-|....+.++++.+++.+.....+.. +....+.++|++.. ++-+.-+.+|..++..+..+....+..+.||.+.
T Consensus 1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 13333344567777877776665521 22445778888764 3336678899999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHH
Q psy15255 176 IKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~V 192 (199)
+++.+.+....- ++.|
T Consensus 1173 LIp~ll~~~s~l-E~~v 1188 (1702)
T KOG0915|consen 1173 LIPLLLNAYSEL-EPQV 1188 (1702)
T ss_pred HHHHHHHHcccc-chHH
Confidence 999998887764 5554
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.43 Score=39.99 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCC-------CCChHHHHHHHHHH----------------------------------H
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAG-------NNLWPEFLQNNLKS----------------------------------Q 95 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~-------~~~WpeLl~~~ik~----------------------------------~ 95 (199)
+-..|+.++++.+.+.+.-..... ...||+++..+++. .
T Consensus 89 ~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ 168 (335)
T PF08569_consen 89 DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWK 168 (335)
T ss_dssp -HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGG
T ss_pred CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHH
Confidence 556788888888888888766532 36778888877742 1
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHh---HhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNL---IDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~ 170 (199)
++..++ .++-.+..-|..++-++...- ...+...+++.++..+.+++++++--.|..+++.++.+....... +.
T Consensus 169 ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~ 247 (335)
T PF08569_consen 169 FFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMT 247 (335)
T ss_dssp HHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred HHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHH
Confidence 333344 455666555555554433211 112334688999999999999999999999999999998664432 34
Q ss_pred HHHH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 171 TYLV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 171 ~~~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|++ .-+.++...+.|+ +..||.+|+
T Consensus 248 ~yi~~~~nLkl~M~lL~d~-sk~Iq~eAF 275 (335)
T PF08569_consen 248 RYISSPENLKLMMNLLRDK-SKNIQFEAF 275 (335)
T ss_dssp HHTT-HHHHHHHHHHTT-S--HHHHHHHH
T ss_pred HHHCCHHHHHHHHHHhcCc-chhhhHHHH
Confidence 4443 3355666788997 899999986
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.54 Score=47.98 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=87.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+ .++.++..++.++..+++.- . ++..+. ++.++. .+++.++..+.+++..|.......
T Consensus 534 pLV~LL~s-gd~~~q~~Aa~AL~nLi~~~----d----~~~I~~-----Lv~LLl-sdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 534 ALLWLLKN-GGPKGQEIAAKTLTKLVRTA----D----AATISQ-----LTALLL-GDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHHHHhcc----c----hhHHHH-----HHHHhc-CCChhHHHHHHHHHHHHHhhcchh
Confidence 57888888 78889998888888886532 1 112222 445666 566777777788777765422111
Q ss_pred hcc---CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 127 AGN---NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 127 ~~~---~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
... ..-+.-++.|.+++++++..+++.|+.++..++....+.... .....++.+...+.++ +.+++.+|+
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA 672 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSA 672 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHH
Confidence 000 012356888999999999999999999999999765443221 1123344455566776 778887764
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.14 Score=45.30 Aligned_cols=165 Identities=12% Similarity=0.139 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhcchhhHhhhhccC-HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC-----CCCChH
Q psy15255 12 EERQMSAVLLRKIFSTDFIEIYSKLA-VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-----GNNLWP 85 (199)
Q Consensus 12 ~~R~~a~vlLr~~~~~~~~~~~~~l~-~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~-----~~~~Wp 85 (199)
+-|-.|+.-+-+.++. +..-. -+.-..+-+.+..-....++...|+ |-.+|..|-..--.. -.+.||
T Consensus 15 ekRKaaalelEk~Vk~-----l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rk--GgLiGlAA~~iaLg~~~~~Y~~~iv~ 87 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKD-----LVNNNDYDQIRKVISELAGDYAYSPHANMRK--GGLIGLAAVAIALGIKDAGYLEKIVP 87 (675)
T ss_pred HHHHHHHHHHHHHHHH-----HHccCcHHHHHHHHHHHHHHhccCccccccc--chHHHHHHHHHHhccccHHHHHHhhH
Confidence 4566666666666542 11111 1111223333333333345555555 555555554331111 023344
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
. ++.++. +++..+|..||+.+..|+... ......+.++++..+.+...|++..||.+|= .+..+....
T Consensus 88 P---------v~~cf~-D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdI 155 (675)
T KOG0212|consen 88 P---------VLNCFS-DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDI 155 (675)
T ss_pred H---------HHHhcc-CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHh
Confidence 4 445777 888999999999999988744 2223478899999999999999999986653 334433322
Q ss_pred -hhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 166 -GNQE-STYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 166 -~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+.- .=+++.+++.+...+-+- ++.+|..-
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~-n~~tR~fl 187 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVI-NPMTRQFL 187 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcC-CchHHHHH
Confidence 2211 114677788887777775 67777543
|
|
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.42 Score=43.27 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=93.5
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH---------------HHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS---------------QIILLL 100 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~---------------~ll~~l 100 (199)
-+.+.|..+.+.|..-+...++..+++++. ..++..+-- +. .=++.+.-++|- -|+++|
T Consensus 266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvl---p~Ll~~~~~--g~-a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF 339 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVL---PILLAALEF--GD-AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLF 339 (690)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHhhc--cc-cchhhhhHHHHhhhhccccccccchhhhHHHHh
Confidence 357788888888888887777777776532 222222210 01 112222222221 277788
Q ss_pred hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH
Q psy15255 101 QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180 (199)
Q Consensus 101 ~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l 180 (199)
. .++..+|...++=+-..+..+.+ ...-+.++|.+..++.|.|+.+|+.++..+..+++.+... ..-..++.+|
T Consensus 340 ~-~~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ 413 (690)
T KOG1243|consen 340 K-SPDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYL 413 (690)
T ss_pred c-CcchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHH
Confidence 8 88889998766655555544432 1234679999999999999999999999999999988765 2235666666
Q ss_pred HHhhCCCCCHHHhh
Q psy15255 181 QQCLLPPNPYSVQA 194 (199)
Q Consensus 181 ~~~l~d~~~~~Vr~ 194 (199)
...-.|. ++.+|.
T Consensus 414 ar~q~d~-~~~irt 426 (690)
T KOG1243|consen 414 ARLQPDE-HGGIRT 426 (690)
T ss_pred HhhCccc-cCcccc
Confidence 6554443 655553
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.16 Score=43.69 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=55.7
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++..+. ++++.||..+.+.++. -..+...+.|..++.++++.+|.+++.+++..-.. +
T Consensus 91 L~~~L~-d~~~~vr~aaa~ALg~-----------i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------~---- 148 (410)
T TIGR02270 91 VLAVLQ-AGPEGLCAGIQAALGW-----------LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------P---- 148 (410)
T ss_pred HHHHhc-CCCHHHHHHHHHHHhc-----------CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------h----
Confidence 445666 7778888876666542 24567788888889999999999999877762211 1
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+...++|+ |+.||.+|++
T Consensus 149 -~~~L~~~L~d~-d~~Vra~A~r 169 (410)
T TIGR02270 149 -GPALEAALTHE-DALVRAAALR 169 (410)
T ss_pred -HHHHHHHhcCC-CHHHHHHHHH
Confidence 12455567787 9999998874
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.038 Score=29.23 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
-..+++++.| +++.||..++..++.+++.
T Consensus 2 lp~l~~~l~D-~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLND-PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 3468899999 9999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.15 Score=51.82 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-----HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-----LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-----l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
..|.+.|.+ +++.+++.++.+++.+....- .....+ ++- ++.++. ..+..++..++.++..++
T Consensus 612 ~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~-----d~~~avv~agaIpP-----LV~LLs-s~~~~v~keAA~AL~nL~ 679 (2102)
T PLN03200 612 RTLIQLLSS-SKEETQEKAASVLADIFSSRQ-----DLCESLATDEIINP-----CIKLLT-NNTEAVATQSARALAALS 679 (2102)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCh-----HHHHHHHHcCCHHH-----HHHHHh-cCChHHHHHHHHHHHHHH
Confidence 456677777 788999999999988875331 111111 121 556777 777888999999988888
Q ss_pred HHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 121 RNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 121 ~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...-+..-.... ...+|.|.+++.++|..+++.|+.++..++..-+....-.....++.+...++++ ++++|..|+
T Consensus 680 ~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa 756 (2102)
T PLN03200 680 RSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAA 756 (2102)
T ss_pred hCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHH
Confidence 522110000111 2367778999999999999999999999997654321111234456677788887 788887664
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.65 Score=34.62 Aligned_cols=120 Identities=12% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhc---C---c--------CC------------CC--ChHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI---D---D--------AG------------NN--LWPEFLQNNLKS 94 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l---~---~--------~~------------~~--~WpeLl~~~ik~ 94 (199)
.+-..|++.|+.|.+..+|+.+-.++|.|....- + . .. .. .-.|.-++.+-+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~ 89 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVIN 89 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHH
Confidence 3566789999999889999999999999875431 0 0 00 00 112344555556
Q ss_pred HHHHHHhhcccHH-HHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 95 QIILLLQTCDNDN-IRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 95 ~ll~~l~~~~~~~-vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.|+..++ +++-+ -...+.+++..|+....... ..+.|.++|.++..+++.+...|+.-+.-++.+...
T Consensus 90 ~L~~iL~-D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 90 ALMRILR-DPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHH-hhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 7888888 55533 34456777777776543222 478899999999999987778999888888777654
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.89 Score=42.51 Aligned_cols=125 Identities=13% Similarity=0.166 Sum_probs=86.1
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH---HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS---QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 132 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~---~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~ 132 (199)
.+..|--.+++.+..|++.+=. ....+.+. .++..+. +.-+.+|..+..++-.++. ....
T Consensus 307 aN~~v~~~aa~~l~~ia~~lr~---------~~~~~~~~v~p~lld~lk-ekk~~l~d~l~~~~d~~~n-------s~~l 369 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKLRP---------LFRKYAKNVFPSLLDRLK-EKKSELRDALLKALDAILN-------STPL 369 (815)
T ss_pred cchhHHHHHHHHHHHHHHhcch---------hhHHHHHhhcchHHHHhh-hccHHHHHHHHHHHHHHHh-------cccH
Confidence 6667777777888888766511 12222222 1444454 5556666555555444433 3567
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-h-HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-E-STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+.+.+..++.+.+|++|......+...+...+.. . ..-...+.+.+.....|. +.+||.+|.+
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e 436 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT-DKDVRKAALE 436 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHH
Confidence 788999999999999999999999999998887743 2 344567777888888897 9999998864
|
|
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.68 Score=42.25 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC---------
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA--------- 79 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~--------- 79 (199)
.|..+|+.|.-|| |.-.+.++-..|...+|+-|.+ -+..+|..+.--+|+|+...-...
T Consensus 381 rDvSirrravDLL-----------Y~mcD~~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtDy~WyVdviLq 448 (938)
T KOG1077|consen 381 RDVSIRRRAVDLL-----------YAMCDVSNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATDYSWYVDVILQ 448 (938)
T ss_pred cchHHHHHHHHHH-----------HHHhchhhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 5666777766665 5556666777899999999999 899999999999999998764321
Q ss_pred ---------CCCChHHHHHHHHHH---------HHHHHHhhcc-cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHH
Q psy15255 80 ---------GNNLWPEFLQNNLKS---------QIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLF 140 (199)
Q Consensus 80 ---------~~~~WpeLl~~~ik~---------~ll~~l~~~~-~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~ 140 (199)
..+.|-.+.+..+.+ .++..++... +...-+.++.++++...-+.+ ...-.-..++..+.
T Consensus 449 Liriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~-~prss~~~qFsllh 527 (938)
T KOG1077|consen 449 LIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIAD-DPRSSPAVQFSLLH 527 (938)
T ss_pred HHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcC-CCCCChHHHHHHHH
Confidence 246666665543322 2444444111 112222233344443322211 11122345666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 141 QCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 141 ~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.-....++..|-.-+....+++...++ -.+.+..+|.....-. |++++.-|+|+
T Consensus 528 ~K~~~~s~~tr~lLLtTyiKl~nl~PE----i~~~v~~vFq~~~n~~-D~ElQqRa~EY 581 (938)
T KOG1077|consen 528 EKLHLCSPVTRALLLTTYIKLINLFPE----IKSNVQKVFQLYSNLI-DVELQQRAVEY 581 (938)
T ss_pred HHhccCChhHHHHHHHHHHHHHhhChh----hhHHHHHHHHhhcccC-CHHHHHHHHHH
Confidence 666666777776666666666655432 2345666666665555 88898888764
|
|
| >PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.13 Score=34.17 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
..+...++..+|....+|+..++..-.+ .....|+.++..+-....+++..+-..|++++..
T Consensus 24 ~i~~~~~~~~vre~il~ci~qil~~~~~-~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 24 YIMSNNPSIDVRELILECILQILQSRGE-NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHhHH-HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 3445567889999999999998876543 3457899999999999998888888888887654
|
It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. |
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.054 Score=48.97 Aligned_cols=95 Identities=9% Similarity=0.184 Sum_probs=64.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++.+.. .++..||.+.|.+++.+...... -.....+.|...+..-+.|..|.||.-|+.+++.+=+.-.++--+
T Consensus 90 lLRg~E-skdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~---- 163 (892)
T KOG2025|consen 90 LLRGTE-SKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP---- 163 (892)
T ss_pred HHhccc-CcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc----
Confidence 444555 67889999999999887763221 012356777888888888999999999999999977532221112
Q ss_pred HHHHHHHhhC-CCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLL-PPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~-d~~~~~Vr~~A~ 197 (199)
+...+...++ || +++||.+|+
T Consensus 164 v~n~l~~liqnDp-S~EVRRaaL 185 (892)
T KOG2025|consen 164 VVNLLKDLIQNDP-SDEVRRAAL 185 (892)
T ss_pred HHHHHHHHHhcCC-cHHHHHHHH
Confidence 2223333333 66 999998875
|
|
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.2 Score=40.26 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=61.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.+...+.+ +++..|+.+|.+.|.+-. |.-+|.++| -+.....++-|||-+++.++.|+.
T Consensus 191 al~~~l~~-~SalfrhEvAfVfGQl~s-----------~~ai~~L~k----~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 191 ALIDGLAD-DSALFRHEVAFVFGQLQS-----------PAAIPSLIK----VLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred HHHHhccc-chHHHHHHHHHHHhhccc-----------hhhhHHHHH----HHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 46777888 588899988888876632 222333222 123346778999999999887774
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
++-+++|.+.+.|+++-||+++--+|..
T Consensus 250 ------e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 250 ------EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4567888888999998899887776654
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.9 Score=38.01 Aligned_cols=146 Identities=18% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+..+|-.|+-.+...+.+++..+ ..+-+ ....+.|+..|.++++-.+|+++=.+++-++|+..+. -.+++
T Consensus 136 ~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E---~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-----~~~fl 206 (342)
T KOG2160|consen 136 SDAELRELAARVIGTAVQNNPKSQ-EQVIE---LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-----QDEFL 206 (342)
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHH-HHHHH---cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-----HHHHH
Confidence 578999999999998887653111 00101 1267789999999888899999999999999998542 11222
Q ss_pred HHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhHhh
Q psy15255 89 QNNLKSQIILLLQTC--DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA-NSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~--~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
+..--+.|..+++ + .+...+.++...+..+......+. ...-+..++....-. ...+..+++.+++++......+
T Consensus 207 ~~~G~~~L~~vl~-~~~~~~~lkrK~~~Ll~~Ll~~~~s~~-d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQ-SNNTSVKLKRKALFLLSLLLQEDKSDE-DIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hcCCHHHHHHHHH-cCCcchHHHHHHHHHHHHHHHhhhhhh-hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 2111223455676 5 445566677777777765544321 112233333333333 3457888988888887776543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.12 Score=41.60 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=65.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--EST 171 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~ 171 (199)
|+.+++...+|.++..+.-+++..+..-.. ...+- .-++.+..++.++++.+|+.|+.++..+....+.. ++.
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~n---q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFN---QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhH---HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 667888777889998888888776543322 12222 25778888899999999999999999987765543 345
Q ss_pred HHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 172 YLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 172 ~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|.+.+...+.. ++-|.+++.++++
T Consensus 94 ~i~~Vc~~~~s---~~lns~~Q~agLr 117 (254)
T PF04826_consen 94 YIPQVCEETVS---SPLNSEVQLAGLR 117 (254)
T ss_pred HHHHHHHHHhc---CCCCCHHHHHHHH
Confidence 55555544433 3225567766653
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.4 Score=36.46 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=92.2
Q ss_pred HhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH--HHHHHH--h---------hc
Q psy15255 38 VNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS--QIILLL--Q---------TC 103 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~--~ll~~l--~---------~~ 103 (199)
++.-..++..|...+.+.. ...+|..++.+.|.+.-.-- ..++-+..+++. .++... . ..
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~------~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGG------SDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 4445577777888888743 45678888888888765421 122222211110 011111 1 12
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh----hHHHHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ----ESTYLVVIKQM 179 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~----l~~~~~~l~~~ 179 (199)
+++.+...|+..-+-++..+.+......|...+|.|..++++++..||.+|-++++-+.|...+. ..+..+.+...
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~ 277 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQ 277 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHH
Confidence 23557777777777777655442234678889999999999999999999999999999877642 23456777777
Q ss_pred HHHhhCCC
Q psy15255 180 LQQCLLPP 187 (199)
Q Consensus 180 l~~~l~d~ 187 (199)
+.....++
T Consensus 278 l~~La~dS 285 (309)
T PF05004_consen 278 LRELATDS 285 (309)
T ss_pred HHHHHHhc
Confidence 77776654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2933|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.74 Score=37.96 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=72.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.+.+.+++ +...|.+++|.+++.++..+ ++.--+-+..++++-+.+.- .++.=||.-|-..+..+..+..
T Consensus 133 ~vvkslKN-lRS~VsraA~~t~~difs~l-----n~~i~~~ld~lv~~Ll~ka~--~dnrFvreda~kAL~aMV~~vt-- 202 (334)
T KOG2933|consen 133 AVVKSLKN-LRSAVSRAACMTLADIFSSL-----NNSIDQELDDLVTQLLHKAS--QDNRFVREDAEKALVAMVNHVT-- 202 (334)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHhccC--
Confidence 34455555 77889999999999999776 22222223332222122111 2333455555555554443221
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHHHHHHHHHHHHhhCC
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~~~~l~~~l~~~l~d 186 (199)
-.-+++.|.-+.++.++.+|..++.++..+...++-. ..+++..+.+.+.+-+.|
T Consensus 203 -----p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d 259 (334)
T KOG2933|consen 203 -----PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSD 259 (334)
T ss_pred -----hHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcc
Confidence 1347888888889999999999999999988766411 234444444444444343
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.25 Score=33.36 Aligned_cols=68 Identities=7% Similarity=0.031 Sum_probs=54.1
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.-++ ++.+.+|-.+...+..++..-- .....++.++..+.+.++|+|+-|=..|+++++.+++..++.
T Consensus 10 ~~L~-dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 10 SDLN-DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHcc-CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3444 7888899988888877765321 123678999999999999999999999999999999887553
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.51 Score=45.55 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHH----HHHHHHh----hcccHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKS----QIILLLQ----TCDNDNIRRKIC 113 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~----~ll~~l~----~~~~~~vr~~a~ 113 (199)
..+-.+|.+-+-+ +.-.+||-.+...-++++..-+..+. +++..++-+ -.+.-+. .+-...||...+
T Consensus 76 ~s~~e~L~~~~~~-~~we~rhg~~i~lrei~~~h~~~~~~----~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 76 LSFLEELVNDLFE-PQWEIRHGAAIALREILKTHGDSLSY----ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred HHHHHHHHHHhcC-chhhhhcCcchhhhhHHHHhcchhhH----HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4667778888887 88999999888888888877654332 333322211 1111111 122346888888
Q ss_pred HHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 114 ~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
.++..+..+..+ ....+.+.++.+++..+.|.+|.+++..+-+......+.+....+.+...+..+++|+ +.+||
T Consensus 151 q~L~~~l~~~~~----s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~ 225 (1549)
T KOG0392|consen 151 QALGAYLKHMDE----SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVR 225 (1549)
T ss_pred HHHHHHHHhhhh----HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHH
Confidence 888887776543 4566777788888888899999999999888877554556677788889999999998 99999
Q ss_pred hhhhcC
Q psy15255 194 ALQLKF 199 (199)
Q Consensus 194 ~~A~~f 199 (199)
..|..|
T Consensus 226 ~~aa~~ 231 (1549)
T KOG0392|consen 226 SVAAQF 231 (1549)
T ss_pred HHHHHH
Confidence 887654
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.32 Score=36.31 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc--------------------------------cC
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG--------------------------------NN 130 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~--------------------------------~~ 130 (199)
.+|+|++. |+.++..+.+.++|..+..+++.|..-.+-.+. ..
T Consensus 7 ~yP~LL~~-----L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 7 DYPELLDI-----LLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred HhHHHHHH-----HHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHH
Confidence 57889887 667888788899999999999887653321000 01
Q ss_pred ChH-HHHHHHHHHhcCCCH-HHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 131 LWP-EFLQFLFQCANSDNT-TLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 131 ~~~-~ll~~l~~~~~~~~~-~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
..| -.+..+.+.++|++- ....+++.++..++...+.+-.+|.+.+++.+...++.. +...|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~-~~~~~ 145 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTC-PDSLR 145 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhC-CHHHH
Confidence 111 134556677777643 345688888888887776666788998888888888765 44433
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.27 Score=44.93 Aligned_cols=123 Identities=16% Similarity=0.119 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
.||+.|--+..| .+..||+.+-..+|-++-. =|+.++. .+.++..+-++.||..++-+++-.+.
T Consensus 555 air~lLh~aVsD-~nDDVrRaAVialGFVl~~---------dp~~~~s-----~V~lLses~N~HVRyGaA~ALGIaCA- 618 (929)
T KOG2062|consen 555 AIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR---------DPEQLPS-----TVSLLSESYNPHVRYGAAMALGIACA- 618 (929)
T ss_pred hHHHhhcccccc-cchHHHHHHHHHheeeEec---------ChhhchH-----HHHHHhhhcChhhhhhHHHHHhhhhc-
Confidence 455555555666 8889999766666655422 2444443 44577656789999886555543221
Q ss_pred hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
.....+-+..|--++.|+..-||.+||-+++.|+--..+++.|..+.+-..+...+.|.
T Consensus 619 ------GtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 619 ------GTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred ------CCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 12334556666667778888899999999999987766666555566666665565554
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.32 Score=46.59 Aligned_cols=145 Identities=15% Similarity=0.131 Sum_probs=93.2
Q ss_pred HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 38 VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
.+-...+.+....+|.+ +.+.||+..-+.|+.|..=.-....+. -+++. |+..+. +.+...|-.-.+.|.
T Consensus 573 ~~L~~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ksND---~iLsh-----LiTfLN-DkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKSND---VILSH-----LITFLN-DKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhccccc---chHHH-----HHHHhc-CccHHHHHHHHhhcc
Confidence 34456777788888888 779999998888777765543322111 13444 445666 667777755444444
Q ss_pred HHHHHhHhhhccC-ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 118 EVARNLIDDAGNN-LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 118 ~i~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.++-.+ |.. .-..|+|.+.|+++|+.+.|-..|+.++..+++.- .+ +++.-.|.+-+.-.+-.| +.=||.+
T Consensus 643 gvsi~V----G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~~i~~~v~PlL~hP-N~WIR~~ 715 (1431)
T KOG1240|consen 643 GVSIFV----GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVKDILQDVLPLLCHP-NLWIRRA 715 (1431)
T ss_pred ceEEEE----eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHHHHHHhhhhheeCc-hHHHHHH
Confidence 332211 111 12459999999999999999999999999988752 12 234444444445556677 7778887
Q ss_pred hhcC
Q psy15255 196 QLKF 199 (199)
Q Consensus 196 A~~f 199 (199)
+|.|
T Consensus 716 ~~~i 719 (1431)
T KOG1240|consen 716 VLGI 719 (1431)
T ss_pred HHHH
Confidence 7754
|
|
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.47 Score=43.28 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
.-.++-.-+..++.+ .++-||++++..++.+-...-+.-....-.+.+.. ++. ++++.|--.|...+.+|
T Consensus 118 i~ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~--------ll~-D~~p~VVAnAlaaL~eI 187 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKD--------LLS-DSNPMVVANALAALSEI 187 (734)
T ss_pred HHHHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHH--------Hhc-CCCchHHHHHHHHHHHH
Confidence 346888889999999 99999999998888886554332223333333433 333 78888888888888887
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.....+.....--+.+...+...+..- .| +-+.++..+..+.+++- .....+...+...+++. ++.|.+.|+|
T Consensus 188 ~e~~~~~~~~~l~~~~~~~lL~al~ec~EW----~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~-n~avvlsavK 261 (734)
T KOG1061|consen 188 HESHPSVNLLELNPQLINKLLEALNECTEW----GQIFILDCLAEYVPKDS-REAEDICERLTPRLQHA-NSAVVLSAVK 261 (734)
T ss_pred HHhCCCCCcccccHHHHHHHHHHHHHhhhh----hHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccC-CcceEeehHH
Confidence 765543111222333444444443321 22 23344555555555442 12234555555555554 5555555544
|
|
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.4 Score=39.84 Aligned_cols=159 Identities=12% Similarity=0.098 Sum_probs=97.6
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhhcCc-CCCCChHHHHHHHHHHHHHHHHh-hccc
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQT--CDNDNIRRKICDAAAEVARNLIDD-AGNNLWPEFLQNNLKSQIILLLQ-TCDN 105 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~--e~~~~vR~~~~~~ia~la~~~l~~-~~~~~WpeLl~~~ik~~ll~~l~-~~~~ 105 (199)
..+++.++.+....+-..+.+++-. +.+...|+.+-+++-.+.+..... .|++.-++.+.. .+..+. ....
T Consensus 722 ~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-----fl~~Isagl~g 796 (1176)
T KOG1248|consen 722 KRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-----FLSIISAGLVG 796 (1176)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-----HHHHHHhhhcc
Confidence 4556667766665555555555443 245566888888888887432221 222221333332 222222 1113
Q ss_pred HHHHHHHHHHHHHHHHHhHh--hh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVARNLID--DA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQ 181 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~--~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~ 181 (199)
...++.+++ |..+...+.+ +. .....+.++..+.-++.+.+++++.+|+..+..++..+++. +.+|.+.|++-+.
T Consensus 797 d~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 797 DSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred cHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
Confidence 344555555 4333333332 11 12456778888888888999999999999999999888877 5789999988888
Q ss_pred HhhCCCCCHHHhhh
Q psy15255 182 QCLLPPNPYSVQAL 195 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~ 195 (199)
...+|. ...+|..
T Consensus 876 ~ls~d~-k~~~r~K 888 (1176)
T KOG1248|consen 876 ALSHDH-KIKVRKK 888 (1176)
T ss_pred HHHHhh-hHHHHHH
Confidence 887875 6667654
|
|
| >KOG1949|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.56 Score=42.81 Aligned_cols=160 Identities=10% Similarity=0.057 Sum_probs=98.5
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e----~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
-..|...+-+-.+.|-.-+++.+-+. +...+-.+...++|-.+..- .-.+.-.|++-.+.+..|...++ .++
T Consensus 112 frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqk---k~~qgVeeml~rL~~p~l~R~L~-a~N 187 (1005)
T KOG1949|consen 112 FRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQK---KVRQGVEEMLYRLYKPILWRGLK-ARN 187 (1005)
T ss_pred HHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHhHHHHHhhc-cCc
Confidence 34677777666666666666665542 44455666666777665442 01355677888888888999999 889
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHH----HHHHHHhcCCCHHHHHHHHHHHHhh----hHhhhhhhHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFL----QFLFQCANSDNTTLKESALRLFTSV----PEIFGNQESTYLVVIK 177 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll----~~l~~~~~~~~~~vr~~a~~~l~~i----~e~~~~~l~~~~~~l~ 177 (199)
..||..|+.+..+.....-++.-....+.++ ..+..++.|+=|.||..|..-++.+ -+.+++. -...++
T Consensus 188 s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~---i~~~ll 264 (1005)
T KOG1949|consen 188 SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPT---ILIDLL 264 (1005)
T ss_pred hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHH---HHHHHH
Confidence 9999999988877654332221112334443 3566777899999997665555554 4444443 222334
Q ss_pred HHHHHhh-CCCCCHHHhhhhh
Q psy15255 178 QMLQQCL-LPPNPYSVQALQL 197 (199)
Q Consensus 178 ~~l~~~l-~d~~~~~Vr~~A~ 197 (199)
..+..-+ .|. ..+||...+
T Consensus 265 ~kI~d~~a~dt-~s~VR~svf 284 (1005)
T KOG1949|consen 265 KKITDELAFDT-SSDVRCSVF 284 (1005)
T ss_pred HHHHHHhhhcc-chheehhHh
Confidence 4443333 343 668887654
|
|
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.88 Score=41.54 Aligned_cols=108 Identities=11% Similarity=0.094 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-HHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
+--+++-..+|.+..+ ++..||-..|+.++.+... +..-+|- ...+.+..+..++ +-.|.||..|+-+++
T Consensus 81 DlV~~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~------~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTES-KDKKVRFRVLQILALLSDE------NAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALS 151 (892)
T ss_pred hHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHhcc------ccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHH
Confidence 4557777788888887 9999999999999999852 3444444 3333333333344 677899999888776
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTS 160 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~ 160 (199)
.+=. +.+... -.....+...++ ||++.||.+|+..+..
T Consensus 152 rlQ~----d~~dee-~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 152 RLQG----DPKDEE-CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHhc----CCCCCc-ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 5432 111222 234555566665 7899999999987653
|
|
| >KOG2149|consensus | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.21 Score=42.35 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=78.4
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVI 176 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l 176 (199)
..+. .-+..+|..|..-+-.+...-++ ....+.-.+++.+...+.|.|..+|....+++-.++.-.... +.++...+
T Consensus 65 ~qlk-HhNakvRkdal~glkd~l~s~p~-~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 65 SQLK-HHNAKVRKDALNGLKDLLKSHPA-ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred hhhc-CchHhhhHHHHHHHHHHHHhChH-HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 3444 67788999888888777665332 233577788999999999999999999999988866554443 57899999
Q ss_pred HHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 177 KQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 177 ~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.+++..+|.+. .++||..+.+|
T Consensus 143 ~~yi~~AMThi-t~~i~~dslkf 164 (393)
T KOG2149|consen 143 MPYISSAMTHI-TPEIQEDSLKF 164 (393)
T ss_pred HHHHHHHHhhc-cHHHHHhhHHH
Confidence 99999999997 99999988876
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.9 Score=34.18 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHH
Q psy15255 62 RKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLL-QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLF 140 (199)
Q Consensus 62 ~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l-~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~ 140 (199)
-.++..+..+.+.. .+.|+++++. +..++ + +.++.++..+.+.+..+.....-+ ....|.-+.+-+
T Consensus 102 i~~a~s~~~ic~~~-----p~~g~~ll~~-----ls~~L~~-~~~~~~~alale~l~~Lc~~~vvd-~~s~w~vl~~~l- 168 (234)
T PF12530_consen 102 ISIAASIRDICCSR-----PDHGVDLLPL-----LSGCLNQ-SCDEVAQALALEALAPLCEAEVVD-FYSAWKVLQKKL- 168 (234)
T ss_pred HHHHHHHHHHHHhC-----hhhHHHHHHH-----HHHHHhc-cccHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHhc-
Confidence 33445555665553 4499999885 55667 5 677788888899998887654421 246787777765
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhHhhh--hhhHHHHHHHHHHHHHhhCCCCC-------HHHhhhhhc
Q psy15255 141 QCANSDNTTLKESALRLFTSVPEIFG--NQESTYLVVIKQMLQQCLLPPNP-------YSVQALQLK 198 (199)
Q Consensus 141 ~~~~~~~~~vr~~a~~~l~~i~e~~~--~~l~~~~~~l~~~l~~~l~d~~~-------~~Vr~~A~~ 198 (199)
-.+..|.+-..-+..+.-+...-- ++...+...++..+-+...+. + .+|+..|++
T Consensus 169 --~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~-~~~~~~~~~~~~~~a~~ 232 (234)
T PF12530_consen 169 --SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS-DVNVASQWTSVRLAAFE 232 (234)
T ss_pred --CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHHHh
Confidence 223355555444444443332211 223456677888887777775 5 467766653
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.09 Score=39.61 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l 184 (199)
--.+|+.|.+++..+...... .-.+.+++..+..++.| +..+|..++..+..++...+..+.+..+.+..-+...+
T Consensus 40 GLelRK~ayE~lytlLd~~~~---~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLS---RIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCS---SS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 346899999999998875433 34678999999999999 99999999999999998887776555666655554444
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.8 Score=40.78 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHh----c-CCchhHHHH--HHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQ----T-CDNDNIRRK--ICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~----~-e~~~~vR~~--~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~ 111 (199)
++...+-.-+.+.|. + .++...|.+ +-.++|.|++.+.+. .....-+...+-+-++..|+ ++..-.|.+
T Consensus 406 e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~---s~~~~~mE~flv~hVfP~f~-s~~g~Lrar 481 (1010)
T KOG1991|consen 406 ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK---SPYKSQMEYFLVNHVFPEFQ-SPYGYLRAR 481 (1010)
T ss_pred hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC---CchHHHHHHHHHHHhhHhhc-CchhHHHHH
Confidence 333444555555555 1 245555644 445677777666553 22222222222222445566 788889999
Q ss_pred HHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhh---hhhHHHHHHHHHHHHHhhCCC
Q psy15255 112 ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFG---NQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 112 a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~---~~l~~~~~~l~~~l~~~l~d~ 187 (199)
||.+++.+++....+ ....-+.+....+++. |.+-.||..|.-|+..+.+... ..+.+|...+++-+......-
T Consensus 482 ac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 999999988654432 3556778888889998 7788899988888988886654 336777777777776665553
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.92 Score=34.67 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIK 177 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~ 177 (199)
+++..+|..|.+++..+... ++.++ .+-+|.+..+..|+++.+|..|...+..+.+-.+.-+ ..+.+.+-
T Consensus 19 ~~~~~vr~~Al~~l~~il~q----GLvnP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~ 89 (187)
T PF12830_consen 19 SSDDSVRLAALQVLELILRQ----GLVNP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIR 89 (187)
T ss_pred CCCHHHHHHHHHHHHHHHhc----CCCCh-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68899999999999877753 22233 3679999999999999999999999999988776554 34455543
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.1 Score=31.02 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQ 182 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~ 182 (199)
....-|.++...+..+.. ..........|.+...|..++. .+..|+.|+++-..++..++++ +.+..+.+...+..
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~--~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALE--IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 455567778888888777 4332222334444444444443 4489999999999999988765 67777777666654
Q ss_pred h
Q psy15255 183 C 183 (199)
Q Consensus 183 ~ 183 (199)
.
T Consensus 104 ~ 104 (107)
T PF08064_consen 104 L 104 (107)
T ss_pred h
Confidence 4
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.22 Score=44.10 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH----HHHHHHHHH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES----TYLVVIKQM 179 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~----~~~~~l~~~ 179 (199)
.+...|..+-++++.++...+.. ....| .++..+|+.+.++++++|.+.-.+++.++..+...-. .....+..+
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l-~~~d~-~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l 463 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSL-FSKDL-SLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELL 463 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccc-ccccH-HHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 46778999999999999877642 22344 6889999999888999999999999999887764322 112223333
Q ss_pred HHHhhCCCCCHHHhhhhhcC
Q psy15255 180 LQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 180 l~~~l~d~~~~~Vr~~A~~f 199 (199)
+....++. ...+|..|++|
T Consensus 464 ~~~~~~~~-~~~~R~~avk~ 482 (501)
T PF13001_consen 464 LLSYIQSE-VRSCRYAAVKY 482 (501)
T ss_pred HHhhccch-hHHHHHHHHHH
Confidence 34444454 77899999886
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.2 Score=36.03 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhhHh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~e~ 164 (199)
+...+. .++.-.||.++.+++.+- -|.-+|.+.+.+.+ ..+-||.-|..+|+.|...
T Consensus 192 l~~~l~-~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 192 LIDGLA-DDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred HHHhcc-cchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 555555 447777877666655432 24445555555554 4889999999999998753
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.36 E-value=2.8 Score=37.53 Aligned_cols=151 Identities=14% Similarity=0.212 Sum_probs=80.6
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-H
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-P 85 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-p 85 (199)
+..+....++|+-++-+.++. ++.+.++.- ..++.+..| ++..||.++-.-+..+.+. +..| +
T Consensus 32 ~kg~~k~K~Laaq~I~kffk~-----FP~l~~~Ai----~a~~DLcED-ed~~iR~~aik~lp~~ck~------~~~~v~ 95 (556)
T PF05918_consen 32 VKGSPKEKRLAAQFIPKFFKH-----FPDLQEEAI----NAQLDLCED-EDVQIRKQAIKGLPQLCKD------NPEHVS 95 (556)
T ss_dssp GGS-HHHHHHHHHHHHHHHCC------GGGHHHHH----HHHHHHHT--SSHHHHHHHHHHGGGG--T--------T-HH
T ss_pred ccCCHHHHHHHHHHHHHHHhh-----ChhhHHHHH----HHHHHHHhc-ccHHHHHHHHHhHHHHHHh------HHHHHh
Confidence 334678889999998888653 444444444 457888888 7788999876666666543 2333 4
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhhH
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN--SDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vr~~a~~~l~~i~e 163 (199)
-+... |.++++ .+++.....+-.++..+....+. ..|-.++.+... +++..+|+-++.-+..-+-
T Consensus 96 kvaDv-----L~QlL~-tdd~~E~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 96 KVADV-----LVQLLQ-TDDPVELDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HHHHH-----HHHHTT----HHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HHHHH-----HHHHHh-cccHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 44444 667888 44444444444556666654332 333334344332 4577899998887754443
Q ss_pred hhhhh-hH---HHHHHHHHHHHHhhCC
Q psy15255 164 IFGNQ-ES---TYLVVIKQMLQQCLLP 186 (199)
Q Consensus 164 ~~~~~-l~---~~~~~l~~~l~~~l~d 186 (199)
.+... +. .--..|...+...|+|
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 33333 22 1223445555566666
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.1 Score=35.53 Aligned_cols=92 Identities=13% Similarity=0.056 Sum_probs=67.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|-+|+.-.--..|..+|.++...|...+..+.+....+-+.+.++-.+...+.+||-.-+..+-...--+++.+.+....
T Consensus 59 LaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~ 138 (307)
T PF04118_consen 59 LAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKG 138 (307)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 45566523335688889999999998877666667777888888888888888899888888777766666666666666
Q ss_pred HHHHHHHhhCCC
Q psy15255 176 IKQMLQQCLLPP 187 (199)
Q Consensus 176 l~~~l~~~l~d~ 187 (199)
++.-+..++.|+
T Consensus 139 li~slLpGLede 150 (307)
T PF04118_consen 139 LILSLLPGLEDE 150 (307)
T ss_pred HHHHhccccccC
Confidence 666666677764
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.4 Score=39.68 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
-+.+-..+|.++.+ ++..||...++.++.+.... ..-.|.+-..++..|.+-+= +-.+.||..|..+++.+-
T Consensus 89 V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v------~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 89 VAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVV------REIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQ 160 (885)
T ss_pred HHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHH
Confidence 35566677888887 99999999999999987543 22224444444434444333 677889999888887644
Q ss_pred HHhHhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFT 159 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~ 159 (199)
... .+.-+.....|...++ ||+..||.+|+--+.
T Consensus 161 e~~-----~neen~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 161 EME-----LNEENRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred hcc-----CChHHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 211 1233345556666665 789999999987654
|
|
| >KOG1837|consensus | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.8 Score=42.76 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcchhh-HhhhhccCHhhHHH----HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 13 ERQMSAVLLRKIFSTDF-IEIYSKLAVNDQNN----LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~~~-~~~~~~l~~~~~~~----ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
.|++.--.+++.+..|. +..|. .+.+.. +-.++.+.... .+..+.-...+++++++...-.+ +.|+++
T Consensus 1470 ~~~Lvl~cl~~~~~~Dt~~~f~t---~~r~~~~~~p~v~ql~n~~~e--~~~~~~v~~~li~~i~~~~~a~~--~d~~pl 1542 (1621)
T KOG1837|consen 1470 LGTLVLNCLKDLFLFDTIESFVT---KSRFELLSYPLVSQLVNVLLE--FYASDIVSKLLIAEIASDSVADK--DDLKPL 1542 (1621)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHh---hhhhhhhhhhhHHHHHHhhcc--chhhhHHHHHHHHHHHhhccCCh--hhhHHH
Confidence 44555556666666654 33332 122221 22333332222 22333344456666666654332 229999
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
... +++-.. +.+..+|..|...+..+...+.+ +.....|+++|++-+++.|.+.+|-..+-..+..+-+.+++
T Consensus 1543 ~~k-----~l~~tr-ss~~~~r~~ai~~~~~l~~~lge-~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1543 NQK-----ILKKTR-SSSRKARYLAIIQVKLLYTKLGE-NVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHH-----HHHHhc-cccHHHHHHHHHHHHHHHHHhcc-hhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 775 333444 67788999988888877776543 22345699999999999998888876666666666666666
Q ss_pred hhH
Q psy15255 168 QES 170 (199)
Q Consensus 168 ~l~ 170 (199)
.+.
T Consensus 1616 ~l~ 1618 (1621)
T KOG1837|consen 1616 PLQ 1618 (1621)
T ss_pred hhh
Confidence 443
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.29 Score=47.88 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=65.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHhHhh---hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHH
Q psy15255 102 TCDNDNIRRKICDAAAEVARNLIDD---AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIK 177 (199)
Q Consensus 102 ~~~~~~vr~~a~~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~ 177 (199)
.+|++.|+.. ...|=..++.+ .-..+.++++.-|.-.+.+..|+||+++|-|+..+...-+.+ +..++..+-
T Consensus 1008 yDP~~~Vq~a----M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw 1083 (1702)
T KOG0915|consen 1008 YDPDKKVQDA----MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELW 1083 (1702)
T ss_pred cCCcHHHHHH----HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 5777777744 44444444432 122577888888888899999999999999999999775433 455666777
Q ss_pred HHHHHhhCCCCCHHHhhhhhc
Q psy15255 178 QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.++...|.|= .+.||.+|=+
T Consensus 1084 ~~~fRvmDDI-KEsVR~aa~~ 1103 (1702)
T KOG0915|consen 1084 EAAFRVMDDI-KESVREAADK 1103 (1702)
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 7777777775 6779988754
|
|
| >KOG1992|consensus | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.4 Score=39.38 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCC-----C-CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 45 KSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAG-----N-NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 45 k~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~-----~-~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
--.+|+.+..+. +..+|.. ++.-.|+.++..+ . ..-++=-...+|..++.++- .....+.....+++.
T Consensus 39 ~l~lL~Lv~~~~~d~~~r~a----aav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl-~s~~~iQ~qlseal~ 113 (960)
T KOG1992|consen 39 PLLLLNLVANGQQDPQIRVA----AAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLML-SSPFNIQKQLSEALS 113 (960)
T ss_pred hHHHHHHHhccCcChhHHHH----HHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 346788888755 6677774 5555666654321 1 12233356788888888876 455667777778888
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.|+....+ ..||.|+|-+...++++|-.+-.+.+....++.
T Consensus 114 ~Ig~~DFP----~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 114 LIGKRDFP----DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred HHhccccc----hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 88876543 699999999999999887665555555544443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=93.96 E-value=2.1 Score=35.06 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
+.+.+.++.++++ +++.||...=.+.|...-.. ..+ .+.++. ++..++ ..+..++..+++++..++
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld------~~~a~~~l~l-----~~~~~~-~~~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLD------KELAKEHLPL-----FLQALQ-KDDEEVKITALKALFDLL 92 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC------hHHHHHHHHH-----HHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 5666777789998 88899998888888776332 111 111222 445565 568899999999999988
Q ss_pred HHhHhhh-ccC-------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 121 RNLIDDA-GNN-------LWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 121 ~~~~~~~-~~~-------~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
....... ... .-..++..+.+.+.+.++.+|..|++.++++.
T Consensus 93 ~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 93 LTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6543211 112 23569999999999999999999999999976
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=3.4 Score=42.07 Aligned_cols=114 Identities=11% Similarity=0.253 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHH----HHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQ----IILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~----ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
+...+..+-.+ ++..|+-.+-+.+-.++-..++. .||...-+... +...+....+..+|..+.+|+..|
T Consensus 1138 l~~hf~~vg~~-~n~~va~fAidsLrQLs~kfle~------eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qm 1210 (1780)
T PLN03076 1138 LSDFFVTIGCS-ENLSIAIFAMDSLRQLSMKFLER------EELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQM 1210 (1780)
T ss_pred HHHHHHHhcCC-cchhHHHHHHHHHHHHHHHhcch------hhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 33344443333 45667777667666666666542 33311111111 333444567789999999999988
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
...-.+ .....|..++.+|...+.+.++.+-+.|+..+..|+...
T Consensus 1211 I~s~~~-nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1211 VLSRVN-NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHh-hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 765543 346799999999999988888888899999999887653
|
|
| >KOG1993|consensus | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.53 Score=43.40 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCC--CCCh--HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAG--NNLW--PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 43 ~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~--~~~W--peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
.+-..+.+...+. .+-.||. ++.+-.|+-++..+ +..| |.=-+..++..++..+. ++++.+....+-.++
T Consensus 32 GF~~~L~sI~l~~t~dv~vRW----mAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~Ll~~~~-E~~nQlaiQ~Avlis 106 (978)
T KOG1993|consen 32 GFFSKLYSIFLSKTNDVSVRW----MAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNLLLHSD-EENNQLAIQNAVLIS 106 (978)
T ss_pred cHHHHHHHHHhccccceeeee----ehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHH
Confidence 3444445544442 3445666 56777777776432 2222 22245677778999998 889999888888999
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCC----CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSD----NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~----~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.||+...+ ..||+|+|.+.+.+++. |..+..-.+-.+..+...+...
T Consensus 107 rIARlDyP----reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~ 157 (978)
T KOG1993|consen 107 RIARLDYP----REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATK 157 (978)
T ss_pred HHHhcCCC----ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99986553 79999999999999876 7777777777788877666543
|
|
| >KOG2020|consensus | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.3 Score=42.55 Aligned_cols=73 Identities=15% Similarity=0.358 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHHhhcCcCCC
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC--------DNDNIRRKICDAAAEVARNLIDDAGN 81 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e--------~~~~vR~~~~~~ia~la~~~l~~~~~ 81 (199)
.+.+|.+|--+|-+.++.. |..+|.+.|.++|.-....+-.. ....++.+.+...-+++|+.- .
T Consensus 58 ~~~~k~f~Lqlle~vik~~----W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eW----p 129 (1041)
T KOG2020|consen 58 NPILKYFALQLLENVIKFR----WNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREW----P 129 (1041)
T ss_pred CchhheeeHHHHHHHHHHh----cccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHH----H
Confidence 4455555555555555555 99999999999999888776542 134578888888889988864 4
Q ss_pred CChHHHHHH
Q psy15255 82 NLWPEFLQN 90 (199)
Q Consensus 82 ~~WpeLl~~ 90 (199)
+.||++++.
T Consensus 130 ~~wp~~i~d 138 (1041)
T KOG2020|consen 130 AIWPTFIPD 138 (1041)
T ss_pred hhcchhhhh
Confidence 788887775
|
|
| >KOG2021|consensus | Back alignment and domain information |
|---|
Probab=93.77 E-value=5.7 Score=36.84 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=91.1
Q ss_pred hhccCHhhHHHHHHHHHHHHh-----cC---CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcc
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQ-----TC---DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCD 104 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~-----~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~ 104 (199)
|...+...+++||..+..-++ +| .-+-+|++++++.+.|.-.+++. .|+.+.-. ++..++.++
T Consensus 71 yne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~d-----lmsv~~~~s 141 (980)
T KOG2021|consen 71 YNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDD-----LMSVFQVDS 141 (980)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHH-----HHHHHhccc
Confidence 455778888888887765554 43 13568999999999999888873 49987443 222333111
Q ss_pred cHHHHHHHHHHHHHHHHHhHh------------------hhccCChHHHHHHHHHHhc---CC-CHHHHHHHHHHHHhhh
Q psy15255 105 NDNIRRKICDAAAEVARNLID------------------DAGNNLWPEFLQFLFQCAN---SD-NTTLKESALRLFTSVP 162 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~------------------~~~~~~~~~ll~~l~~~~~---~~-~~~vr~~a~~~l~~i~ 162 (199)
..+.-.-=+.++..|-+.+.+ ..-.+..|.+..+-.++++ +. ++.+--..+.+++.++
T Consensus 142 ~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fV 221 (980)
T KOG2021|consen 142 AISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFV 221 (980)
T ss_pred chhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHh
Confidence 110000011222222222211 0112566888888888875 23 7888889999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 163 EIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 163 e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++=.+.. -+..++++...+. -+++|.+||+
T Consensus 222 SWIdInLIa-Nd~f~nLLy~fl~---ieelR~aac~ 253 (980)
T KOG2021|consen 222 SWIDINLIA-NDYFLNLLYKFLN---IEELRIAACN 253 (980)
T ss_pred hhhhhhhhh-chhHHHHHHHHHh---HHHHHHHHHH
Confidence 988766421 1344445555554 3468888874
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.3 Score=42.13 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLW----PEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~----~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.+-.|.-+|-|++.+-... ....| ..-...+...+.|+.++||-+|+.+|+.+...
T Consensus 613 ~pLLrQW~~icLG~LW~d~----~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDY----DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhc----chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 4555555555555544322 22333 33455667778899999999999999999975
|
|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.17 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
.-+.+...+.+.+.|+++.||++|+.++
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4468999999999999999999998763
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.89 Score=38.22 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-HHHHHHHHHHHHHhhcccH--HHHHHHHHHHHHHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-LQNNLKSQIILLLQTCDND--NIRRKICDAAAEVARN 122 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-l~~~ik~~ll~~l~~~~~~--~vr~~a~~~i~~i~~~ 122 (199)
-.++++|.+ ++..||.++-=+.|.+|.-. ....+. ++.-.-.-++.++. +... ++-+.+-=++..+.+.
T Consensus 160 PlfiqlL~s-~~~~V~eQavWALGNiAGDS------~~~RD~vL~~galeplL~ll~-ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 160 PLFIQLLSS-TEDDVREQAVWALGNIAGDS------EGCRDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred HHHHHHHcC-chHHHHHHHHHHhccccCCc------hhHHHHHHhcCchHHHHHHHH-hccchHHHHHHhHHHHHHhhCC
Confidence 357788888 88899988777777776321 111221 11111112555565 3333 2222333344443331
Q ss_pred hHhhhccCChH---HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 123 LIDDAGNNLWP---EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 123 ~~~~~~~~~~~---~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
- ...+.|. .-+|.|++++.+.|+.+-.-||=+++++.+.-.+.+...++ .++.-+...+.++ +..|+.-|+
T Consensus 232 k---nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPal 306 (526)
T COG5064 232 K---NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPAL 306 (526)
T ss_pred C---CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHH
Confidence 1 1235675 47899999999999999999999999988765555444444 5677788888886 777776654
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.4 Score=37.17 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=51.9
Q ss_pred HHHHHHHHHhHhh---hccCChHHHHHHHHHHhc----------CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH
Q psy15255 114 DAAAEVARNLIDD---AGNNLWPEFLQFLFQCAN----------SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180 (199)
Q Consensus 114 ~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~----------~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l 180 (199)
..+..++..+..+ +...+...|+|.++.|+- +..|.+|+.|...++.++..++..-......|...+
T Consensus 235 ~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl 314 (343)
T cd08050 235 IYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTL 314 (343)
T ss_pred HHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 4455555555542 123677889999999883 235799999999999999888766433455666666
Q ss_pred HHhhCCC
Q psy15255 181 QQCLLPP 187 (199)
Q Consensus 181 ~~~l~d~ 187 (199)
...+.|+
T Consensus 315 ~k~l~d~ 321 (343)
T cd08050 315 LKALLDP 321 (343)
T ss_pred HHHHcCC
Confidence 6677765
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.24 Score=41.29 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=57.3
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hH----HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ES----TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~----~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....|.+.|.+..++..+|..|+..+|+-++.+.|..+.+ .. -.-+.|.+.+..|+..+ |.+|..+|.+
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAie 150 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIE 150 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHH
Confidence 34667999999999999999999999999999999987743 21 11357788888899996 9999998875
|
|
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.6 Score=39.69 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhcchh-----------hHhhhhccCHhhHHHHHHH---HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC
Q psy15255 14 RQMSAVLLRKIFSTD-----------FIEIYSKLAVNDQNNLKSQ---IILLLQTCDNDNIRRKICDAAAEVARNLIDDA 79 (199)
Q Consensus 14 R~~a~vlLr~~~~~~-----------~~~~~~~l~~~~~~~ik~~---ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~ 79 (199)
=++++.++|..-+.. ...+...++...+...-+. ++..|.. .+..+|+.+-.+.|.+.-..+...
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~-es~~lRnavlei~~n~V~~~l~d~ 347 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDS-ESYTLRNAVLEICANLVASELRDE 347 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhcch
Confidence 355677777765432 2445556666666544443 3443444 788889888777777776665532
Q ss_pred CCCChHHHHHHHHHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 80 GNNLWPEFLQNNLKSQIILLLQ---TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 80 ~~~~WpeLl~~~ik~~ll~~l~---~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
... +.. .-++.+++..+. .+-++-+|.++.++...|...-. -..+.|.+++...+..++|.+.-||..|+.
T Consensus 348 e~~--~~s--k~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s--~p~~~~~eV~~la~grl~DkSslVRk~Ai~ 421 (1251)
T KOG0414|consen 348 ELE--EMS--KSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS--IPLGSRTEVLELAIGRLEDKSSLVRKNAIQ 421 (1251)
T ss_pred hhh--HHH--HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC--CCccHHHHHHHHHhcccccccHHHHHHHHH
Confidence 100 000 011112333332 26788999999888887765432 135789999999999999999999999999
Q ss_pred HHHhhhHhhh
Q psy15255 157 LFTSVPEIFG 166 (199)
Q Consensus 157 ~l~~i~e~~~ 166 (199)
.+..+....+
T Consensus 422 Ll~~~L~~~P 431 (1251)
T KOG0414|consen 422 LLSSLLDRHP 431 (1251)
T ss_pred HHHHHHhcCC
Confidence 9999986544
|
|
| >PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.093 Score=29.97 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=27.7
Q ss_pred HHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 157 LFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 157 ~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+++.+.+.-+.-+.. +.+...+...+.|+ ++.||.+|+++
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~-s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDS-SPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 345555543322322 47888889999998 99999999864
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.17 E-value=2.6 Score=37.92 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
++.-+|.+|+.+++++.-...+...+ ..+...+..|+.|. |.+||--|
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d~~~~--~sv~~~lkRclnD~-DdeVRdrA 546 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISDVVSP--QSVENALKRCLNDQ-DDEVRDRA 546 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccccccH--HHHHHHHHHHhhcc-cHHHHHHH
Confidence 45578999999999998777665544 67778889999997 99999543
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.44 Score=36.36 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh-hhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI-FGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~-~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+.+||.+++++...+...|..|.+.+..+++. -++.+-|.++.++.-+..+++.. |++|...+++
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-~~~V~~~~L~ 102 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-DPEVFCATLK 102 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 3467899999999988888999999999999988 55667888999988999999997 9999877653
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.8 Score=40.07 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=68.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.+=..|+| |++.+|..+-.+.+.+= -|-+.|..+ -.+-++.. ++++-||..|+..|-.+-+-.
T Consensus 112 tfQk~L~D-pN~LiRasALRvlSsIR-----------vp~IaPI~l-lAIk~~~~-D~s~yVRk~AA~AIpKLYsLd--- 174 (968)
T KOG1060|consen 112 TFQKALKD-PNQLIRASALRVLSSIR-----------VPMIAPIML-LAIKKAVT-DPSPYVRKTAAHAIPKLYSLD--- 174 (968)
T ss_pred HHHhhhcC-CcHHHHHHHHHHHHhcc-----------hhhHHHHHH-HHHHHHhc-CCcHHHHHHHHHhhHHHhcCC---
Confidence 34567899 99999987666555431 223333210 00113444 889999999888887655422
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
..+-++|...+-.++.|.++.|--+|+.+|-.+|..
T Consensus 175 --~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 175 --PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred --hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 245569999999999999999999999999998854
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.4 Score=38.29 Aligned_cols=140 Identities=7% Similarity=0.100 Sum_probs=69.6
Q ss_pred HhhHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHhhcCcC---------CCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 38 VNDQNNLKSQIILLLQT---CDNDNIRRKICDAAAEVARNLIDDA---------GNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~---e~~~~vR~~~~~~ia~la~~~l~~~---------~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
..+++.++. ++.++.. .+++.+|.++.-..|.+++...... ....-.++.+.+. ..+-.... ..+
T Consensus 427 ~Pt~e~l~~-l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~-~~~ 503 (618)
T PF01347_consen 427 RPTEELLKE-LFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLE-QELKEAVS-RGD 503 (618)
T ss_dssp ---HHHHHH-HHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHH-HHHHHHHH-TT-
T ss_pred CCCHHHHHH-HHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHH-HHHHHHhh-ccC
Confidence 444455543 3333332 3567889999999999998876542 1111111122111 11111222 333
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD---NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
...+..++.+++.+ .-|..++.+...+.+. +..+|.+|+.+|..+....++. ..+.+.+++.+
T Consensus 504 ~~~~~~~LkaLgN~-----------g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---v~~~l~~I~~n 569 (618)
T PF01347_consen 504 EEEKIVYLKALGNL-----------GHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---VREILLPIFMN 569 (618)
T ss_dssp HHHHHHHHHHHHHH-----------T-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---HHHHHHHHHH-
T ss_pred HHHHHHHHHHhhcc-----------CCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---HHHHHHHHhcC
Confidence 34344444444332 2245566666666554 7789999999999886655433 33455555554
Q ss_pred hhCCCCCHHHhhhhh
Q psy15255 183 CLLPPNPYSVQALQL 197 (199)
Q Consensus 183 ~l~d~~~~~Vr~~A~ 197 (199)
- .++++||.+|+
T Consensus 570 ~---~e~~EvRiaA~ 581 (618)
T PF01347_consen 570 T---TEDPEVRIAAY 581 (618)
T ss_dssp T---TS-HHHHHHHH
T ss_pred C---CCChhHHHHHH
Confidence 3 24788999886
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.6 Score=35.98 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH------HHHHHHHHhhcccHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL------KSQIILLLQTCDNDNIRRKICDA 115 (199)
Q Consensus 43 ~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i------k~~ll~~l~~~~~~~vr~~a~~~ 115 (199)
.....++..|... ++..+.+-+-..+++++...- ...+-+....- -..++..+. .++..+...++.+
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-----~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~i 128 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-----SRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFI 128 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SS-----SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-----HHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHH
Confidence 4445556666665 777888888888888775541 11222211110 112455555 6788899999999
Q ss_pred HHHHHHHhHhhhccCChHHHHHHHHHHhcC----CCHHHHHHHHHHHHhhhH
Q psy15255 116 AAEVARNLIDDAGNNLWPEFLQFLFQCANS----DNTTLKESALRLFTSVPE 163 (199)
Q Consensus 116 i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~vr~~a~~~l~~i~e 163 (199)
+..++...... ......+.++.+++.+.+ ++..++..|+++++.++.
T Consensus 129 Lt~Ll~~~~~~-~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 129 LTSLLSQGPKR-SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHcCCcc-ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 88877643321 011113677777777765 355677889999998874
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.2 Score=31.53 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=58.4
Q ss_pred Hhhh----hccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc
Q psy15255 30 IEIY----SKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN 105 (199)
Q Consensus 30 ~~~~----~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~ 105 (199)
+.+| .++.++.-. +-..|.+.|..+.++.+-..+|.=+|++++.. |. |.+... +.-.|..++.++. +++
T Consensus 27 e~FW~ENa~kf~~~~~~-llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~-gr~ii~---~lg~K~~vM~Lm~-h~d 99 (119)
T PF11698_consen 27 EKFWRENADKFEENNFE-LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PN-GRNIIE---KLGAKERVMELMN-HED 99 (119)
T ss_dssp HHHHHHHSGGGSSGGGH-HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GG-GHHHHH---HHSHHHHHHHHTS--SS
T ss_pred ccHHHHHHHHHHHcccH-HHHHHHHHHccCCCcceeehhhcchHHHHHHC-hh-HHHHHH---hcChHHHHHHHhc-CCC
Confidence 5566 456555544 55568888866678999999999999999885 31 222222 2224667888888 899
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15255 106 DNIRRKICDAAAEVAR 121 (199)
Q Consensus 106 ~~vr~~a~~~i~~i~~ 121 (199)
+.||..|+.++..+..
T Consensus 100 ~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 100 PEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.76 Score=41.06 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
..++..+..|++.|......+++ .-++-+..++.++.|.|..||..|++.|..+|..-++ |...|..+|.+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHH
Confidence 35677888877777776665543 4566788899999999999999999999999865432 44445555555
Q ss_pred hhCC
Q psy15255 183 CLLP 186 (199)
Q Consensus 183 ~l~d 186 (199)
+|+.
T Consensus 104 lL~t 107 (556)
T PF05918_consen 104 LLQT 107 (556)
T ss_dssp HTT-
T ss_pred HHhc
Confidence 5555
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.31 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.+|.|.+++.+++..+++.|+.+++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5778888899999999999999999875
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=92.51 E-value=2.9 Score=38.74 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHhhcc
Q psy15255 10 SVEERQMSAVLLRKIFS 26 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~ 26 (199)
+...|-+|+=.|-+.+.
T Consensus 307 ~~~LrvlainiLgkFL~ 323 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLL 323 (866)
T ss_pred CchHHHHHHHHHHHHhc
Confidence 34556666666555543
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.61 Score=31.48 Aligned_cols=61 Identities=16% Similarity=0.059 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+...+.-++|+.+.+|-.|+..+..+++.-. ......+.+..++...++|+ |+=|=+.|++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~ 65 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-DSYVYLNAIK 65 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-CchHHHHHHH
Confidence 4455666789999999999999999998765 22345688899999999997 8878777653
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.27 Score=41.52 Aligned_cols=92 Identities=8% Similarity=-0.008 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh-h-hhhHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF-G-NQESTYLVVIKQML 180 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~-~-~~l~~~~~~l~~~l 180 (199)
..+..++..+...+..+-... ++...-.-.-=+|++..++.++|+.+|+.++.+++.|.=.. . +.+.+--+.+++.+
T Consensus 178 skdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~L 256 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPAL 256 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHH
Confidence 444555566555555443211 11000000123688889999999999999999999997332 2 33555445688889
Q ss_pred HHhhCCCCCHHHhhhh
Q psy15255 181 QQCLLPPNPYSVQALQ 196 (199)
Q Consensus 181 ~~~l~d~~~~~Vr~~A 196 (199)
...|.|+ +++|+..|
T Consensus 257 v~Lmd~~-s~kvkcqA 271 (550)
T KOG4224|consen 257 VDLMDDG-SDKVKCQA 271 (550)
T ss_pred HHHHhCC-ChHHHHHH
Confidence 9999998 99998665
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.1 Score=40.14 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHHHHH-HhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 44 LKSQIILL-LQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 44 ik~~ll~~-L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
+-+.+|+. ..| .+..||+++--.+|-+. ++ =|.+++. .++.+..+-++.||-..+-+++- +.
T Consensus 552 vv~~lLh~avsD-~nDDVrRAAViAlGfvc---~~------D~~~lv~-----tvelLs~shN~hVR~g~AvaLGi-ac- 614 (926)
T COG5116 552 VVSTLLHYAVSD-GNDDVRRAAVIALGFVC---CD------DRDLLVG-----TVELLSESHNFHVRAGVAVALGI-AC- 614 (926)
T ss_pred hHhhhheeeccc-CchHHHHHHHHheeeeE---ec------CcchhhH-----HHHHhhhccchhhhhhhHHHhhh-hh-
Confidence 33445554 666 88889986544444332 11 1233322 34455546678888664333332 21
Q ss_pred hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
. ...-..-+..|-.++.|+..-||.+||-+.+.|.....+++.|....|...+.+.+.+.
T Consensus 615 --a---g~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 615 --A---GTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred --c---CCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 1 12233445566677889988999999999999998888888777777777777777664
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.73 Score=44.56 Aligned_cols=109 Identities=11% Similarity=0.170 Sum_probs=75.7
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.++..+.+ +.+-+|.+++.+|+..++..... .. .++-+.++-++. +.+.-+|+.+...+..+.......
T Consensus 820 ~l~~~~~s-~~~a~r~~~ar~i~~~~k~~~~e--------~m-~~v~~~~~~ll~-~~~~~~~r~~a~e~~~~l~~~l~~ 888 (1549)
T KOG0392|consen 820 RLFFFVRS-IHIAVRYAAARCIGTMFKSATRE--------TM-ATVINGFLPLLG-DLDKFVRRQGADELIELLDAVLMV 888 (1549)
T ss_pred HHHHhccc-chHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHhhhcc-chhhHhhhhhHHHHHHHHHHhhcc
Confidence 44555566 78899999999999998775331 11 122233444555 455566777767766666655543
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
....+.+-|++.++.++.|....+|.+|=++|..+...++
T Consensus 889 ~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 889 GLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 3345557789999999999999999999999999876543
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.2 Score=40.72 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=73.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-cc----CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GN----NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~----~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
+.+++. +.+-..|-...++.+.+......+. -. .....|+..+..-++|.+|-+|.-|++.+.+++..-. ...
T Consensus 304 ~~~LLd-ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s-k~~ 381 (1128)
T COG5098 304 FDELLD-SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS-KTV 381 (1128)
T ss_pred HHHHhc-ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc-ccc
Confidence 555666 6667778777777777776654321 11 2456788888888899999999999999999987533 333
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-...+......+++|. +.-||..|++
T Consensus 382 ~~r~ev~~lv~r~lqDr-ss~VRrnaik 408 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDR-SSVVRRNAIK 408 (1128)
T ss_pred chHHHHHHHHHHHhhhh-hHHHHHHHHH
Confidence 34467777888899997 8889998875
|
|
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.24 Score=44.79 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhcchhhHhhhhccCHh-hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH
Q psy15255 14 RQMSAVLLRKIFSTDFIEIYSKLAVN-DQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL 92 (199)
Q Consensus 14 R~~a~vlLr~~~~~~~~~~~~~l~~~-~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i 92 (199)
|++=.+||.+.-. .-+.++++ ....|--++..++.| +++.+|.+.-..++.|+..+=. ++.=.|+++
T Consensus 344 r~iR~~LL~~i~~-----~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~---~~Ln~Ellr--- 411 (690)
T KOG1243|consen 344 RQIRLLLLQYIEK-----YIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSK---RNLNGELLR--- 411 (690)
T ss_pred hHHHHHHHHhHHH-----HhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhch---hhhcHHHHH---
Confidence 4444455555432 23556643 445788889999999 9999998888888888866522 233344444
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 93 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 93 k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
.+.-+|.+++..+|.....|++.|+.++... ..-.-|...+...+.|+-..-|.++..++....++++.. .-
T Consensus 412 ---~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~v 483 (690)
T KOG1243|consen 412 ---YLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--EV 483 (690)
T ss_pred ---HHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--hh
Confidence 2333445667778888777788777655321 112234445555678887778999999999999887654 22
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+.|.+.+.-...|+ +..||-.|.
T Consensus 484 a~kIlp~l~pl~vd~-e~~vr~~a~ 507 (690)
T KOG1243|consen 484 ANKILPSLVPLTVDP-EKTVRDTAE 507 (690)
T ss_pred hhhccccccccccCc-ccchhhHHH
Confidence 355666666666776 777876654
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=91.89 E-value=1 Score=41.87 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=55.1
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhcc-CChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGN-NLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~-~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.|++.++.+.++.....++.-+++++....++.+. -..+.++|.|.+++++. +.++.-.||+++.++||.+++.
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 37888887777777666666566655433222211 24578999999999987 8899999999999999999876
|
|
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.87 Score=41.76 Aligned_cols=54 Identities=20% Similarity=0.018 Sum_probs=40.0
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~ 165 (199)
+.+++||+.|.-.++.++. .=|+.+|...+++... ++.||.+|..+++-.|.--
T Consensus 566 D~nDDVrRaAVialGFVl~---------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLF---------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ccchHHHHHHHHHheeeEe---------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 8899999997777665442 2256666677777644 9999999999999887543
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=91.41 E-value=12 Score=35.20 Aligned_cols=129 Identities=13% Similarity=0.176 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH---HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccC-Ch
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL---KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNN-LW 132 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i---k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~-~~ 132 (199)
.+..|-++|.++..++... .|+...+. -...+.+++ +++...|-+++..++.++.... ++.. ..
T Consensus 819 ~~d~~lkVGEai~k~~qa~---------Gel~~~y~~~Li~tfl~gvr-epd~~~RaSS~a~lg~Lcq~~a--~~vsd~~ 886 (982)
T KOG4653|consen 819 QTDYRLKVGEAILKVAQAL---------GELVFKYKAVLINTFLSGVR-EPDHEFRASSLANLGQLCQLLA--FQVSDFF 886 (982)
T ss_pred CccceehHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHhcC-CchHHHHHhHHHHHHHHHHHHh--hhhhHHH
Confidence 3467788888888777654 12222111 122455666 7766677777777777665432 2222 33
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHH----HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYL----VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~----~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+.+..+.+..+ |+++.+|++|...+..+....+.++-+.. -.....+.+...+..|..++..|+
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaq 956 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQ 956 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 567777777665 77999999999999999987777754422 222222332323322666777765
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.40 E-value=2.2 Score=35.32 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
.-..+++.+.+ ++..+|..++...+.+.... .++. +...+. +.++.+|..+..+++.+
T Consensus 44 ~~~~~~~~l~~-~~~~vr~~aa~~l~~~~~~~-----------av~~-----l~~~l~-d~~~~vr~~a~~aLg~~---- 101 (335)
T COG1413 44 AADELLKLLED-EDLLVRLSAAVALGELGSEE-----------AVPL-----LRELLS-DEDPRVRDAAADALGEL---- 101 (335)
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHHhhhchHH-----------HHHH-----HHHHhc-CCCHHHHHHHHHHHHcc----
Confidence 34567888888 59999999888866664322 2222 334555 78889999987754432
Q ss_pred HhhhccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhH
Q psy15255 124 IDDAGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e 163 (199)
.-|+-++.+...++ |++..+|..+..+++.+-.
T Consensus 102 -------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 102 -------GDPEAVPPLVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred -------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 23455666666666 7899999999999998754
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=91.40 E-value=4.5 Score=36.27 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHhhcCcCCCCChH-HHHHHHHH---HHHHHHHhhcccHHHHHH
Q psy15255 39 NDQNNLKSQIILLLQTC---DNDNIRRKICDAAAEVARNLIDDAGNNLWP-EFLQNNLK---SQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 39 ~~~~~ik~~ll~~L~~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~Wp-eLl~~~ik---~~ll~~l~~~~~~~vr~~ 111 (199)
.+++.++ .+++.+.+. +++.+|..+.-..|.+++..... ...++ .+.+.+++ +.|-.+.. +.+...+..
T Consensus 390 Pt~~~l~-~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~--~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 465 (574)
T smart00638 390 PTEEILK-ALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN--TPSCPDFVLEELLKYLHELLQQAVS-KGDEEEIQL 465 (574)
T ss_pred CCHHHHH-HHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC--CCCCChhhHHHHHHHHHHHHHHHHh-cCCchheee
Confidence 3444443 344555442 45677888888888888776543 22332 23232221 11222222 223222323
Q ss_pred HHHHHHHHHHHhHhhhccCChHHHHHHHHHHhc---CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC
Q psy15255 112 ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCAN---SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN 188 (199)
Q Consensus 112 a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~ 188 (199)
...+++. -.-|..++.+...+. +.+..+|.+|+.+|..+....++. ..+.+.+++.+- .+
T Consensus 466 ~LkaLGN-----------~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---v~~~l~~i~~n~---~e 528 (574)
T smart00638 466 YLKALGN-----------AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---VQEVLLPIYLNR---AE 528 (574)
T ss_pred HHHhhhc-----------cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---HHHHHHHHHcCC---CC
Confidence 2333322 122333333333333 347789999999999877655443 334455554332 24
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
+++||.+|+
T Consensus 529 ~~EvRiaA~ 537 (574)
T smart00638 529 PPEVRMAAV 537 (574)
T ss_pred ChHHHHHHH
Confidence 788999886
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=91.34 E-value=6.8 Score=33.38 Aligned_cols=150 Identities=16% Similarity=0.222 Sum_probs=75.5
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIR 109 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr 109 (199)
++.|+ .+-.+|||..+ + .++....|+++++.+-.+.+.-- ..=.+.+..++.+ ++.-.+.+++.+.|
T Consensus 204 ~ElfE---ddP~EYIrrd~-e---~sd~~TrR~AA~dfl~~L~~~~~-----~~v~~i~~~~i~~-~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 204 EELFE---DDPEEYIRRDL-E---GSDSDTRRRAACDFLRSLCKKFE-----KQVTSILMQYIQQ-LLQQYASNPSNNWR 270 (370)
T ss_dssp HHHHH---HSHHHHHHHHS-C---SS---SHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHH-TTT-HH
T ss_pred HHHHc---cCHHHHHHhhc-c---ccccCCcHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHH-HHHHHhhCCcccHH
Confidence 45554 33446777754 2 23566778888888887776531 1111112222221 22222235566666
Q ss_pred HH--HHHHHHHHHHHhHh-hhccCC-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 110 RK--ICDAAAEVARNLID-DAGNNL-----------WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 110 ~~--a~~~i~~i~~~~~~-~~~~~~-----------~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
.+ |+..++.++..... ..|... ...++|-|. .-.+..|-+|-.|++.+..+-..+++ +....
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~ 346 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHH
Confidence 65 33344443322211 112221 122233333 22245777898999888887766654 36677
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+.+.++++++ +.-|+..|.
T Consensus 347 ~~~~l~~~L~~~-~~vv~tyAA 367 (370)
T PF08506_consen 347 IFPLLVNHLQSS-SYVVHTYAA 367 (370)
T ss_dssp HHHHHHHHTTSS--HHHHHHHH
T ss_pred HHHHHHHHhCCC-Ccchhhhhh
Confidence 888999999997 888887763
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=91.01 E-value=5.2 Score=29.86 Aligned_cols=90 Identities=17% Similarity=0.045 Sum_probs=58.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhh--h---
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQ--E--- 169 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~--l--- 169 (199)
+..+++ +.++.-|-.++..+..++..-..+.+..+-...+..+.+.++++ ++.+++.++.++..++....+. +
T Consensus 30 i~~LL~-s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 30 INSLLQ-SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHhC-CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 556676 66677777777777666654311112233344577777777765 6678999999999999876543 2
Q ss_pred --HHHHHHHHHHHHHhhCC
Q psy15255 170 --STYLVVIKQMLQQCLLP 186 (199)
Q Consensus 170 --~~~~~~l~~~l~~~l~d 186 (199)
.|+...+++.+.+.+++
T Consensus 109 i~tp~l~~~i~~ll~l~~~ 127 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD 127 (165)
T ss_pred HhhccHHHHHHHHHHHHhc
Confidence 35566666666666663
|
|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.77 E-value=2.9 Score=39.17 Aligned_cols=110 Identities=16% Similarity=0.289 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCCCCChHHH--------HHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 44 LKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAGNNLWPEF--------LQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 44 ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL--------l~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
.-..|+....+. .+-..|. .+..-.|+-++ ..|.+= =..+||..++.++- +.+....-..+.
T Consensus 37 F~~kL~~I~~~~~~~m~lR~----~a~i~fkn~I~----~~W~~~~~~~i~p~e~v~IR~~l~~lii-~s~n~l~iq~a~ 107 (947)
T COG5657 37 FALKLLSINLSAFNSMSLRW----AALIQFKNYID----KHWREENGNSILPDENVLIRDELFSLII-SSSNQLQIQNAL 107 (947)
T ss_pred HHHHHHHHHhccccchhHHH----HHHHHHHhhHH----HHhhhhcccCCCCccchHHHHHHHHHHH-cccchHHHHHHH
Confidence 444566665553 2233444 34555666554 455541 12377888888887 343343335568
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+++.||....+ ..||+|+|-+...+++.|...-+..+.++..+.....
T Consensus 108 avs~IA~~DfP----deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 108 AVSRIARLDFP----DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHHHHHhccCc----ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 89998876554 6999999999999999887777777777777765544
|
|
| >KOG0803|consensus | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.2 Score=41.91 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
--++..|.+|...+.++....-......-.|.....+.+++.|++.+||.....++..+...+.+.+.||...+++....
T Consensus 52 KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~ 131 (1312)
T KOG0803|consen 52 KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLG 131 (1312)
T ss_pred ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Confidence 35666777777877776654421111122344455566778899999999999999999999999999999999888877
Q ss_pred hhCCCCCHHHhhhhh
Q psy15255 183 CLLPPNPYSVQALQL 197 (199)
Q Consensus 183 ~l~d~~~~~Vr~~A~ 197 (199)
+.-|. +..|..+|.
T Consensus 132 ~~~d~-~~~vs~aa~ 145 (1312)
T KOG0803|consen 132 GQFDL-DYPVSEAAK 145 (1312)
T ss_pred eeccc-chHHHHHHH
Confidence 76676 777776654
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=90.13 E-value=13 Score=35.13 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=53.6
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDD-AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
++.++. +.++.+|...............+. ........+.|.+.+...|.+..||.+|..+++.++..+++.
T Consensus 376 I~e~lk-~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 376 ILEALK-GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 445555 788888877655555555444311 112456789999999999999999999999999999888766
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=90.09 E-value=1.8 Score=29.92 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHhcC----CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANS----DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~----~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.=.++..+...+.| .+...|..++++++.+++..++.+..+.+.|...+..++..+ ++|..|++
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~---~l~~~al~ 76 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP---ELREEALS 76 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh---hhHHHHHH
Confidence 334456666666666 366788999999999999777778888888888888887764 56766653
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=90.01 E-value=9.3 Score=31.14 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=89.0
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH----HHHHHHHHHHHh-------hcccHHHHHHHHHH
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ----NNLKSQIILLLQ-------TCDNDNIRRKICDA 115 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~----~~ik~~ll~~l~-------~~~~~~vr~~a~~~ 115 (199)
-+|..+.| .++.+|.+-+.+...++.+.-.. .|-.|.+ ..+...+..++- .+++..+-..+..+
T Consensus 123 ~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~----~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 123 PILNLLDD-YSPEIKIQGCQLLHHLLEKVPAA----EWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHHhcC-CCHHHHHHHHHHHHHHHHhCChh----hhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 46677777 69999999999999998876442 2544522 233334445553 12334444556677
Q ss_pred HHHHHHHhHhhhccCChHHHH----HHHHHHhcCC-C---HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 116 AAEVARNLIDDAGNNLWPEFL----QFLFQCANSD-N---TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 116 i~~i~~~~~~~~~~~~~~~ll----~~l~~~~~~~-~---~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
+..++.....+........+- ..+++.+... + +.++..-++.+..++..++-....|...|+.++.+.+.+|
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777766543222223333333 3345555432 4 8899999999999999988888889999999999999887
|
|
| >KOG2933|consensus | Back alignment and domain information |
|---|
Probab=89.87 E-value=10 Score=31.48 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred HHHHHHhh--cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 95 QIILLLQT--CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 95 ~ll~~l~~--~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
.++...++ .....|...||-+++.|+..+-+. .....+.++-.|..-....+.-+|+.|-++|.+.+.....
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----- 203 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----- 203 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-----
Confidence 34444442 334557777888888888766431 1123444554444444455667999999999998776543
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+.+.+..+++.. .+.+|..|+
T Consensus 204 -~~~L~~L~~~~~~~-n~r~r~~a~ 226 (334)
T KOG2933|consen 204 -QKLLRKLIPILQHS-NPRVRAKAA 226 (334)
T ss_pred -HHHHHHHHHHHhhh-chhhhhhhh
Confidence 23444555566775 777776554
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.3 Score=37.57 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHh-hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|+.++. ..+..++..++..++.|+-.--. ..+...-|.++|.+.+++.+++++++-.|-.++..+...
T Consensus 213 LVsll~-s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd 281 (550)
T KOG4224|consen 213 LVSLLK-SGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD 281 (550)
T ss_pred hhhhhc-cCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence 445555 78899999999999888753321 112244578999999999999999998888888887754
|
|
| >KOG2229|consensus | Back alignment and domain information |
|---|
Probab=89.53 E-value=15 Score=32.70 Aligned_cols=127 Identities=16% Similarity=0.265 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEF 135 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~l 135 (199)
.+.+|.+++.+.-.|-... --.-.+|++- ++.++. ..+...|..+..-|..-+...-....+... ..+
T Consensus 33 p~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~l-----ff~l~~-~~dk~lRkllythiv~~Ikn~n~~~kn~klnksl 101 (616)
T KOG2229|consen 33 PPELREKIVKALILLRNKN-----LIVAEDLLEL-----FFPLLR-CGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSL 101 (616)
T ss_pred CHHHHHHHHHHHHHHhccC-----cCCHHHHHHH-----HHHHHh-cCchhHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 4566666666554443221 1112345542 444555 677788877655444444433222222333 357
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 136 LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 136 l~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
-.+++.++.++++. +|-.++..+++..-..+=.-...+--+...|+.. ++.|.+.++.|
T Consensus 102 q~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~--~~ki~vs~l~F 160 (616)
T KOG2229|consen 102 QAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSK--VPKILVSGLRF 160 (616)
T ss_pred HHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhcc--CcHHHHhhhHH
Confidence 77888888888775 4555556666665555311122333333446554 78999998887
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=89.26 E-value=9.5 Score=30.19 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhHh
Q psy15255 130 NLWPEFLQFLFQCA-NSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 130 ~~~~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i~e~ 164 (199)
++|+++++.+.+++ ++.++.++..|++++..+++.
T Consensus 117 ~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 117 DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 39999999999999 788889999999999999954
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=89.19 E-value=14 Score=31.94 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 146 DNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 146 ~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.++.-...-+.-+..+++.+++. +......+...+..|+.++ +.+|.-.|+.|
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~ 320 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYF 320 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGG
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34555567777788888877654 5667778888899999998 99999988865
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=89.14 E-value=8.4 Score=37.36 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-c---cCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDA-G---NNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~---~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
++.++. ..+...|....++++.+......+. + .+. -.+++..|.+-+.|-++-+|.-+++++..+++.-...+
T Consensus 317 lv~lld-~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~- 394 (1251)
T KOG0414|consen 317 LVDLLD-SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPL- 394 (1251)
T ss_pred HHHhcC-CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCc-
Confidence 556666 6777889888888887766655311 1 122 24599999999999999999999999999998754322
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 171 TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 171 ~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.....+.......++|. +.=||..|++
T Consensus 395 ~~~~eV~~la~grl~Dk-SslVRk~Ai~ 421 (1251)
T KOG0414|consen 395 GSRTEVLELAIGRLEDK-SSLVRKNAIQ 421 (1251)
T ss_pred cHHHHHHHHHhcccccc-cHHHHHHHHH
Confidence 34567777778889997 8889998864
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=88.85 E-value=6.1 Score=27.42 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHh
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQC 183 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~ 183 (199)
.-|.++...+..+.+. .. ++....+|.+..++++. .+..|..|+++-..+...++++ +.+..+.+...+...
T Consensus 30 ~ek~~~i~ai~~lI~~-~g----~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 30 NEKKRALRSIGFLIKL-MG----KHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 3467777888777763 22 34555555555555543 6679999999999999888765 666667666555543
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG1525|consensus | Back alignment and domain information |
|---|
Probab=88.58 E-value=13 Score=36.79 Aligned_cols=85 Identities=13% Similarity=-0.049 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCC
Q psy15255 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPN 188 (199)
Q Consensus 109 r~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~ 188 (199)
+...-++|.++-...+. -.-.++|.|-.-+.+.+..+|..|...+|.+.......+..-.+.+...+..-+.|-
T Consensus 239 ~~~~he~i~~L~~~~p~-----ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~- 312 (1266)
T KOG1525|consen 239 KIKYHELILELWRIAPQ-----LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDI- 312 (1266)
T ss_pred hhHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccC-
Confidence 33334555554433322 345567777777888899999999999999987766655322344555555566886
Q ss_pred CHHHhhhhhcC
Q psy15255 189 PYSVQALQLKF 199 (199)
Q Consensus 189 ~~~Vr~~A~~f 199 (199)
+++||.+++++
T Consensus 313 ~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 313 SVEVRMECVES 323 (1266)
T ss_pred ChhhhhhHHHH
Confidence 88999988763
|
|
| >KOG0413|consensus | Back alignment and domain information |
|---|
Probab=88.12 E-value=2 Score=40.76 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQ 178 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~ 178 (199)
-++-.+...+|+...-+++.++.... .-.+-++|.+..++.|+++-||..++-.+..+...- +..+...|.-
T Consensus 976 eLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~ 1047 (1529)
T KOG0413|consen 976 ELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFI 1047 (1529)
T ss_pred HHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHH
Confidence 44445556678776555565554432 134567888999999999999999999998887653 3334455544
Q ss_pred HHHHhhCCCCCHHHhhhh
Q psy15255 179 MLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 179 ~l~~~l~d~~~~~Vr~~A 196 (199)
-|...+-|. +++||--|
T Consensus 1048 Rf~l~l~D~-~edIr~~a 1064 (1529)
T KOG0413|consen 1048 RFMLALLDA-NEDIRNDA 1064 (1529)
T ss_pred HHHHHHccc-CHHHHHHH
Confidence 444455665 78888544
|
|
| >PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins | Back alignment and domain information |
|---|
Probab=88.11 E-value=3.3 Score=27.45 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=47.8
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+++.-+...+. .++.++|+..++++..+++..++.+..==..+..++..+..|+ ++++-..|+
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-~e~lv~~af 80 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-DESLVRLAF 80 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-CccHHHHHH
Confidence 45555556544 5689999999999999999988888655668888888888886 666655544
|
It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. |
| >KOG2759|consensus | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.1 Score=38.40 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHH------HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHH
Q psy15255 81 NNLWPEFLQNNLKS------QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKE 152 (199)
Q Consensus 81 ~~~WpeLl~~~ik~------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~ 152 (199)
.+=|.|=..-+-++ .|+++++.+.+|.+---||.-|++..++.+. |..-... -.+.++.+++++|+.||.
T Consensus 350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--gk~vv~k~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--GKAVVEKYGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--HhHHHHHhchHHHHHHHhcCCCchHHH
Confidence 45566654433332 4777888667788877889999999988765 2222221 246778999999999999
Q ss_pred HHHHHHHhhhH
Q psy15255 153 SALRLFTSVPE 163 (199)
Q Consensus 153 ~a~~~l~~i~e 163 (199)
.|+.++..++-
T Consensus 428 ~ALlavQ~lm~ 438 (442)
T KOG2759|consen 428 HALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
|
|
| >KOG2149|consensus | Back alignment and domain information |
|---|
Probab=87.89 E-value=12 Score=31.96 Aligned_cols=119 Identities=10% Similarity=0.186 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
...++.-+++ .+..||..+-.-+=.+.+...+. -...--++++ .+..++. +.+..||....+.+-.++....
T Consensus 60 lkeLl~qlkH-hNakvRkdal~glkd~l~s~p~~-l~~~~~~ll~-----~~~~~i~-D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 60 LKELLSQLKH-HNAKVRKDALNGLKDLLKSHPAE-LQSHLYALLQ-----KLRELIL-DDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHHhhhcC-chHhhhHHHHHHHHHHHHhChHH-HHHHHHHHHH-----Hhhhhhc-CccccHHHHHHHHHHHHHhhcc
Confidence 3345566666 66777776655555555332110 0001111111 1223333 7788888765555544333333
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST 171 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~ 171 (199)
+.......+-+++-++.++.+-.+.+|+-++..+.-+++.+++.+..
T Consensus 132 ~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~ 178 (393)
T KOG2149|consen 132 KEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSR 178 (393)
T ss_pred hhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHH
Confidence 21124566778999999999999999999999999999998877543
|
|
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=87.44 E-value=1.9 Score=37.93 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCCCCCh-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh-hhccCChHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-DAGNNLWPE 134 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~~~~W-peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~-~~~~~~~~~ 134 (199)
.-.||..+|.++|.|.++.--.-.++.| |.+.++ |..++....+-.||.+|+.+++.-+..+.. +...-.|..
T Consensus 543 ~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~-----L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~ 617 (728)
T KOG4535|consen 543 AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA-----LTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNA 617 (728)
T ss_pred ccccchHHHHHHHHhhcCccccccCCCchHHHHHH-----HHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHH
Confidence 4589999999999999987544457889 556776 555666677888998887776654433211 111235666
Q ss_pred HHHHHHH
Q psy15255 135 FLQFLFQ 141 (199)
Q Consensus 135 ll~~l~~ 141 (199)
++..|..
T Consensus 618 lv~aLi~ 624 (728)
T KOG4535|consen 618 LVTALQK 624 (728)
T ss_pred HHHHHHH
Confidence 6666544
|
|
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=87.44 E-value=4 Score=37.56 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=50.9
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
.++.++. ++-+-+|.+|.-.+..++-..++ ..-.-+|-|..-+.|+||.|..+|+.+++.++.--++.
T Consensus 148 Dv~tLL~-sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 148 DVFTLLN-SSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHh-cCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3777787 77888999988888777765554 22233566667788999999999999998888765554
|
|
| >PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] | Back alignment and domain information |
|---|
Probab=87.26 E-value=3.6 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCC
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLP 186 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d 186 (199)
.+.+.++..+..++.+=++.||..|+..+.-++++.++. ...+-..+++-+...+..
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 477889999999999999999999999999999999988 455555555555555554
|
It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex []. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.4 Score=24.01 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.++.|.++++++++.++..++.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3555666667889999999999998875
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=86.95 E-value=4.4 Score=28.12 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHhcCCC----HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANSDN----TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~----~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.=.+++.+...+.|.+ ..-|..++++++.+.+..++.+..+.+.|...+..++..+ +.|..|++
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~---eL~~~al~ 76 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP---ELRSLALR 76 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 44456667777776654 3458899999999999888778888888888888888754 47777653
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.6 Score=39.55 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=64.9
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
++.++. +.-..||..|...++.++..-++ .-..-+.+|..+++|+...||.-|..++..|...+. ....
T Consensus 378 ~VhGlE-DEf~EVR~AAV~Sl~~La~ssP~-----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~-----i~ee 446 (823)
T KOG2259|consen 378 LVHGLE-DEFYEVRRAAVASLCSLATSSPG-----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA-----IREE 446 (823)
T ss_pred eeeech-HHHHHHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe-----ecHH
Confidence 555666 66678999999999888764332 334578899999999999999999999988876531 1233
Q ss_pred HHHHHHHhhCCCCCHHHhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.++.+..++.|. +++||.+.
T Consensus 447 ql~~il~~L~D~-s~dvRe~l 466 (823)
T KOG2259|consen 447 QLRQILESLEDR-SVDVREAL 466 (823)
T ss_pred HHHHHHHHHHhc-CHHHHHHH
Confidence 445556678886 88888664
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.56 E-value=18 Score=30.20 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=58.6
Q ss_pred HhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH-----hhhhhhHHHHH
Q psy15255 100 LQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE-----IFGNQESTYLV 174 (199)
Q Consensus 100 l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e-----~~~~~l~~~~~ 174 (199)
+..|.+.......+.+++.-+..+ ....-+.++..+.+++++..+.+|..-+..++.++. .......++.+
T Consensus 31 ~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (339)
T PF12074_consen 31 LSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLP 106 (339)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 333788887777777766555443 123447799999999999988899999999999875 22222355666
Q ss_pred HHHHHHHHhhCCC
Q psy15255 175 VIKQMLQQCLLPP 187 (199)
Q Consensus 175 ~l~~~l~~~l~d~ 187 (199)
.+...+....+.|
T Consensus 107 ~L~~~~~~~~~~p 119 (339)
T PF12074_consen 107 KLLQSLKEASANP 119 (339)
T ss_pred HHHHHHHHHHhCC
Confidence 7777776666665
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor | Back alignment and domain information |
|---|
Probab=86.38 E-value=20 Score=33.09 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
.+.-|..++..++.++..-++. .... ..|++.|++|+. |.+..+-.+|+.++..++..++..+.+|+..|..++.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~--l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~ 158 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPW--LYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFG 158 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCch--HHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 4566777777777777643320 0111 257888888886 7799999999999999999999889999999988886
Q ss_pred Hhh
Q psy15255 182 QCL 184 (199)
Q Consensus 182 ~~l 184 (199)
..+
T Consensus 159 Rl~ 161 (668)
T PF04388_consen 159 RLL 161 (668)
T ss_pred HHH
Confidence 665
|
The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking []. |
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.34 E-value=2.4 Score=35.72 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=81.2
Q ss_pred HhhHHHHH-----HHHHHHHhcCCc--hhHHHHHHHHHHHHHHhhcCcC-CCCChHHH---HHHHHHHHHHHHHhhcccH
Q psy15255 38 VNDQNNLK-----SQIILLLQTCDN--DNIRRKICDAAAEVARNLIDDA-GNNLWPEF---LQNNLKSQIILLLQTCDND 106 (199)
Q Consensus 38 ~~~~~~ik-----~~ll~~L~~e~~--~~vR~~~~~~ia~la~~~l~~~-~~~~WpeL---l~~~ik~~ll~~l~~~~~~ 106 (199)
+..|.++. .-+|..|.+... +++|+ + .-.++++.... ..-.|..+ +|. |.+++- ..++
T Consensus 189 ~~~RD~vL~~galeplL~ll~ss~~~ismlRn-~----TWtLSNlcRGknP~P~w~~isqalpi-----L~KLiy-s~D~ 257 (526)
T COG5064 189 EGCRDYVLQCGALEPLLGLLLSSAIHISMLRN-A----TWTLSNLCRGKNPPPDWSNISQALPI-----LAKLIY-SRDP 257 (526)
T ss_pred hhHHHHHHhcCchHHHHHHHHhccchHHHHHH-h----HHHHHHhhCCCCCCCchHHHHHHHHH-----HHHHHh-hcCH
Confidence 44555543 346666665322 34454 2 22333333211 13456555 554 444555 5667
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccCChH-HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHH-HHHHHHHHhh
Q psy15255 107 NIRRKICDAAAEVARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV-VIKQMLQQCL 184 (199)
Q Consensus 107 ~vr~~a~~~i~~i~~~~~~~~~~~~~~-~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~-~l~~~l~~~l 184 (199)
.+-.-||=.+..+...-.+.. ..-.+ .+.+-|..++.+++..++.-|++.++.|+.--+.+-.-.++ ..+..|...+
T Consensus 258 evlvDA~WAiSYlsDg~~E~i-~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lL 336 (526)
T COG5064 258 EVLVDACWAISYLSDGPNEKI-QAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL 336 (526)
T ss_pred HHHHHHHHHHHHhccCcHHHH-HHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHh
Confidence 777677777766543211100 00000 12234677788899999999999999998765544222122 3344555567
Q ss_pred CCCCCHHHhhhhh
Q psy15255 185 LPPNPYSVQALQL 197 (199)
Q Consensus 185 ~d~~~~~Vr~~A~ 197 (199)
.++ -..+|.+||
T Consensus 337 s~~-ke~irKEaC 348 (526)
T COG5064 337 SSP-KENIRKEAC 348 (526)
T ss_pred cCh-hhhhhhhhh
Confidence 777 668999998
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=85.95 E-value=12 Score=30.47 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh---c--cCChHHHHHHHHHHhc--------CCC
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA---G--NNLWPEFLQFLFQCAN--------SDN 147 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~---~--~~~~~~ll~~l~~~~~--------~~~ 147 (199)
...||-++|. ++.++. +.++.+|..++.++..++....... + .+.-+-+...++.++. +++
T Consensus 114 ~~~~~liiP~-----iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 114 SQHWPLIIPP-----ILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred HHhhhHHHhh-----HHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 4778888887 777887 7899999999999999988665422 1 1234456667777776 456
Q ss_pred HHHHHHHHHHHHhhhHhh
Q psy15255 148 TTLKESALRLFTSVPEIF 165 (199)
Q Consensus 148 ~~vr~~a~~~l~~i~e~~ 165 (199)
..+=..|.-++..++...
T Consensus 188 ~~Ll~~ay~~L~~L~~~~ 205 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQ 205 (282)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667778888888886653
|
|
| >KOG1525|consensus | Back alignment and domain information |
|---|
Probab=85.95 E-value=6.4 Score=38.76 Aligned_cols=143 Identities=10% Similarity=0.144 Sum_probs=86.2
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC---cCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---DAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKI 112 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~---~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a 112 (199)
..++....+-..|..-|.+ ++..+|.++-.++|.+...--. ......|.+.+. -+. +.+..||+..
T Consensus 252 ~~p~ll~~vip~l~~eL~s-e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~---------r~~-D~~~~vR~~~ 320 (1266)
T KOG1525|consen 252 IAPQLLLAVIPQLEFELLS-EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLG---------RFN-DISVEVRMEC 320 (1266)
T ss_pred hhHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHH---------Hhc-cCChhhhhhH
Confidence 4566667777778888888 7889999999999998865422 223445555443 233 7889999999
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHH
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~V 192 (199)
.+++..+.-.-++ .-...-..+.-...|.|+.+|.....+++.+ +...-.+ .+.+.++..+..-+.|. -..|
T Consensus 321 v~~~~~~l~~~~~-----~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~-~v~~~~l-~~~~~ll~~~~eR~rDK-k~~V 392 (1266)
T KOG1525|consen 321 VESIKQCLLNNPS-----IAKASTILLALRERDLDEDVRVRTQVVIVAC-DVMKFKL-VYIPLLLKLVAERLRDK-KIKV 392 (1266)
T ss_pred HHHhHHHHhcCch-----hhhHHHHHHHHHhhcCChhhhheeeEEEEEe-ehhHhhh-hhhHHHHHHHHHHHhhh-hHHH
Confidence 8888876643211 1122222222233456776665444433332 2111112 22233777777778887 7888
Q ss_pred hhhhh
Q psy15255 193 QALQL 197 (199)
Q Consensus 193 r~~A~ 197 (199)
|..|+
T Consensus 393 R~~Am 397 (1266)
T KOG1525|consen 393 RKQAM 397 (1266)
T ss_pred HHHHH
Confidence 88876
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=85.72 E-value=1.6 Score=37.84 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=48.9
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.|...+..+.++.+---||.-+++++...+. |...... ....++++++++|+.||..|+.++.+++
T Consensus 357 ~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 357 ILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3666776455666666788999999987753 2222222 4667899999999999999999999875
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=85.72 E-value=6.7 Score=35.83 Aligned_cols=74 Identities=8% Similarity=0.111 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH-h----hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 90 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI-D----DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 90 ~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~-~----~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
..+.+...+.+. +...+||..|.+.+...+...+ + ....+..+..+..+...+.|-++.||.-|.++||.+-..
T Consensus 233 ~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 233 KACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 334444556666 8889999999999887776542 1 112255677888899999999999999999999987543
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=85.24 E-value=8.3 Score=28.52 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHH-Hhhhh
Q psy15255 133 PEFLQFLFQCAN--SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYS-VQALQ 196 (199)
Q Consensus 133 ~~ll~~l~~~~~--~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~-Vr~~A 196 (199)
+.+++.+...++ ..+..+..+++++++.-|..-..- ......-.+.+....+.++|.. ||..|
T Consensus 85 eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A 150 (157)
T PF11701_consen 85 EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLA 150 (157)
T ss_dssp TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHH
T ss_pred hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHH
Confidence 456777777787 678899999999999987543211 0112344556666765433555 67655
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=85.22 E-value=16 Score=33.96 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 152 ESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+.++.++..+++.......-....+++++..+++.+ +.++...++.|
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~f 313 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTF 313 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence 477888888888765443333467788888999886 88888877665
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=84.65 E-value=20 Score=30.50 Aligned_cols=139 Identities=10% Similarity=0.059 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHHHhhcCc-CCCCC--
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRR--KICDAAAEVARNLIDD-AGNNL-- 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~--~~~~~ia~la~~~l~~-~~~~~-- 83 (199)
.....|..|.-+||.+.+..... +.+ .-...-+.+++...+.++..-|. .+-.+++.|+...... .|...
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~----v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQ----VTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHH----HHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 33567888888888887543111 111 21223333444333334444443 3445555555444221 12111
Q ss_pred ----hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 84 ----WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 84 ----WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
-.++..+.|..+|. -..+..|-+|-.|++.+..+-..+. ...+.+++|.+.+++++++.-|+..|..++
T Consensus 298 ~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 298 ELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 12223333322232 1123456678888888887666543 358899999999999999999998776653
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >KOG2081|consensus | Back alignment and domain information |
|---|
Probab=84.27 E-value=30 Score=31.03 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHH---HHhcCCchhHHHHHHHHHHHHHHhh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIIL---LLQTCDNDNIRRKICDAAAEVARNL 75 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~---~L~~e~~~~vR~~~~~~ia~la~~~ 75 (199)
.+...--+|+--+|+.+..+ +..+++.+-...|..++. .+.+.++ .+|.+++=.+|.++-..
T Consensus 29 ~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~ 93 (559)
T KOG2081|consen 29 CDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHPD-VIRTQLAVAVAALALHM 93 (559)
T ss_pred chHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHh
Confidence 45667778899999999988 888888777777764433 3334344 88999999999988554
|
|
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=83.54 E-value=8.3 Score=35.55 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=75.6
Q ss_pred hhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHH
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKI 112 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a 112 (199)
|.+..|+.--..-+.++.-..+ +++++|.-+-++.+.+- -.+.|.-+.. -+..++. +.++-+|..+
T Consensus 76 Ya~~~P~~a~~avnt~~kD~~d-~np~iR~lAlrtm~~l~-------v~~i~ey~~~-----Pl~~~l~-d~~~yvRkta 141 (734)
T KOG1061|consen 76 YAKGKPDLAILAVNTFLKDCED-PNPLIRALALRTMGCLR-------VDKITEYLCD-----PLLKCLK-DDDPYVRKTA 141 (734)
T ss_pred hhccCchHHHhhhhhhhccCCC-CCHHHHHHHhhceeeEe-------ehHHHHHHHH-----HHHHhcc-CCChhHHHHH
Confidence 3444444444445556666666 78888876555544331 1233333322 2556777 8889999998
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
..+++.+...-.+ ..+=..++..|..++.|++|.|--.|+.++..|.+.-.
T Consensus 142 a~~vakl~~~~~~---~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 142 AVCVAKLFDIDPD---LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhhcCChh---hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 8887765543222 12334578888888889999999999999999998765
|
|
| >PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells [] | Back alignment and domain information |
|---|
Probab=83.53 E-value=4.5 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 130 NLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
..++++...+..++.++++.++..|++|+...
T Consensus 13 ~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 13 YRSDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998774
|
It is believed to be involved in processing of non-coding RNA []. |
| >PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins | Back alignment and domain information |
|---|
Probab=83.52 E-value=2.9 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q psy15255 38 VNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 72 (199)
Q Consensus 38 ~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la 72 (199)
+.+.+|+|+.+++.|.+ +++..|.++..+++.++
T Consensus 2 ~~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLES-REPSEREQLLPVIATLL 35 (46)
T ss_dssp -HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Confidence 34678999999999999 56888888777777665
|
It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B. |
| >KOG1837|consensus | Back alignment and domain information |
|---|
Probab=82.95 E-value=7.3 Score=38.80 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 132 WPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 132 ~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
|+.+..-+++...+.++..|..|+..+..+.+.+++....+.+.+++.+...+.|. +.+|-.++
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~-~~~Ve~~~ 1602 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE-DDEVECLC 1602 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh-HHHHHHHH
Confidence 99999888888889999999999999999999999888888999999999999996 77776543
|
|
| >PF14868 DUF4487: Domain of unknown function (DUF4487) | Back alignment and domain information |
|---|
Probab=82.80 E-value=6.4 Score=35.41 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=51.8
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
..+..++...+|...++-++.++...++.. ....-|.+-..+.-.+.|.+|-+...|+++|+.|+|.-
T Consensus 486 ~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 486 SLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccC
Confidence 344446667788888888888877665422 22456788777777889999999999999999999864
|
|
| >KOG2022|consensus | Back alignment and domain information |
|---|
Probab=82.68 E-value=45 Score=31.71 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhh
Q psy15255 105 NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 105 ~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l 184 (199)
+++.-..+.+.++.++..+.+ ..-+.+.-+|.+++++.++... +.+...+..+|+....++.+|.+.+...+...+
T Consensus 522 n~ql~~Tss~~igs~s~~l~e--~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l 597 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGE--HPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCYEVL 597 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhc--CCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHh
Confidence 556666777888887776654 1356788899999999644332 234444888999998889898888888877665
Q ss_pred CC
Q psy15255 185 LP 186 (199)
Q Consensus 185 ~d 186 (199)
..
T Consensus 598 ~~ 599 (982)
T KOG2022|consen 598 NK 599 (982)
T ss_pred cc
Confidence 54
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=82.68 E-value=36 Score=30.56 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHhcCC----CHHHHHHHHHHHHhhhH
Q psy15255 130 NLWPEFLQFLFQCANSD----NTTLKESALRLFTSVPE 163 (199)
Q Consensus 130 ~~~~~ll~~l~~~~~~~----~~~vr~~a~~~l~~i~e 163 (199)
..-++++..++.++.++ ++.+|.+|+-+++.++.
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~ 426 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVR 426 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 45688999999998864 66789999999998875
|
|
| >PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) | Back alignment and domain information |
|---|
Probab=82.43 E-value=3.6 Score=27.65 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 145 SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 145 ~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
+.+|.+|+.|...++.++..+++.-..-...|...+...+.|+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~ 59 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDP 59 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCC
Confidence 4588999999999999998887654445567888888888886
|
; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=82.01 E-value=4.7 Score=30.74 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 135 FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 135 ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+++-+.+++.+++..+|..|++.+..+... .+.+. ...++.+.....|| ++.+|..|.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~q---GLvnP-~~cvp~lIAL~ts~-~~~ir~~A~ 66 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQ---GLVNP-KQCVPTLIALETSP-NPSIRSRAY 66 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhc---CCCCh-HHHHhHhhhhhCCC-ChHHHHHHH
Confidence 344455567789999999999999987753 23222 33445566677787 999998875
|
|
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=81.45 E-value=47 Score=31.13 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=57.4
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-------CHHHHHHHHHHHHhhhHhhhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-------NTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
++..+. .++-+||.++.+.+..++. .....+++.+|.+-+..+ +.+.|..-.+.+.+++-.++
T Consensus 322 vLrvLs-s~dldvr~Ktldi~ldLvs-------srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-- 391 (948)
T KOG1058|consen 322 VLRVLS-SPDLDVRSKTLDIALDLVS-------SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-- 391 (948)
T ss_pred HHHHcC-cccccHHHHHHHHHHhhhh-------hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--
Confidence 455565 7888999999888887664 356677777776655422 34567777777666655443
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhh
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQAL 195 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~ 195 (199)
.+...+++.+...+.|. ++.-...
T Consensus 392 --~~aatvV~~ll~fisD~-N~~aas~ 415 (948)
T KOG1058|consen 392 --EVAATVVSLLLDFISDS-NEAAASD 415 (948)
T ss_pred --HHHHHHHHHHHHHhccC-CHHHHHH
Confidence 35567777777788886 5544433
|
|
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=81.39 E-value=8.5 Score=34.03 Aligned_cols=140 Identities=9% Similarity=0.023 Sum_probs=76.1
Q ss_pred cCHhhHHHHH-HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 36 LAVNDQNNLK-SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 36 l~~~~~~~ik-~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
+....|+.+- ..+-.+|.+ ..|.+|...+..+|+++...+.. ....+...+.|+.++.+
T Consensus 447 ln~r~KaawtlgnITdAL~~-~~Ps~~s~~eR~sg~ll~~~~~~-------------------A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 447 LNVRAKAAWSLGNITDALIV-NMPTPDSFQERFSGLLLLKMLRS-------------------AIEASADKDKVKSNAVR 506 (728)
T ss_pred HhHHHHHHHHhhhhHHHHHc-CCCCchHHHHHHHHHHHHHHHHH-------------------HHHhhhhhhhhhhHHHH
Confidence 3334444332 234445555 77778888888888776554221 11112345678888888
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHH----HHhc-CCCHHHHHHHHHHHHhhhHhhhhhh--HHHHHHHHHHHHHhhCCC
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLF----QCAN-SDNTTLKESALRLFTSVPEIFGNQE--STYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~----~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l--~~~~~~l~~~l~~~l~d~ 187 (199)
.+..+...+-+. ......++.+.-. .+.. .....||=.||.+++++...-.-.+ .+....+.+.+.....+.
T Consensus 507 aLgnllQvlq~i-~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 507 ALGNLLQFLQPI-EKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred HHhhHHHHHHHh-hhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 777665433210 0111222222222 2221 2356799999999999986533222 244555666665555553
Q ss_pred CCHHHhhhh
Q psy15255 188 NPYSVQALQ 196 (199)
Q Consensus 188 ~~~~Vr~~A 196 (199)
.+-+||..|
T Consensus 586 ~NFKVRi~A 594 (728)
T KOG4535|consen 586 KNFKVRIRA 594 (728)
T ss_pred ccceEeehh
Confidence 477788765
|
|
| >PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) | Back alignment and domain information |
|---|
Probab=81.31 E-value=10 Score=25.36 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHh
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEI 164 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~ 164 (199)
+++-.+|..|++++..|+....+ ....--|.+...+.+.+.|+ +.....+|+..+..+-..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~-~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSS-SYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999998886543 11344577888888888876 667889999999887443
|
; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus |
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=80.68 E-value=58 Score=31.65 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHH
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ 89 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~ 89 (199)
|..+|-.||=-+.+.. .++|.+--+++-...+..+.-.+++..=|..|-+.|++|+.=+.- ...-++++|
T Consensus 354 dt~VrWSaAKg~grvt--------~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl--ps~l~dVvp 423 (1133)
T KOG1943|consen 354 DTVVRWSAAKGLGRVT--------SRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL--PSLLEDVVP 423 (1133)
T ss_pred cchhhHHHHHHHHHHH--------ccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc--hHHHHHHHH
Confidence 3455666655555554 345566666666677775555456788899999999999653221 122335667
Q ss_pred HHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHhhhH
Q psy15255 90 NNLKSQIILLL--QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQC-ANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 90 ~~ik~~ll~~l--~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++|.--..-- +.....+||-.||.++-.+++..-++...+....|.+.+... +-|++...|++|..||-..+.
T Consensus 424 lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 424 LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 64443211111 123456799999999888887654332233334455444443 358899999999988876653
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=80.46 E-value=18 Score=25.79 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH------HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 131 LWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES------TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 131 ~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~------~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.-.+.+..|-+-++++++.++..|+.++-.++...++.+. .|.+.+..++... .. .+++|+..+++
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~-~~~~Vk~kil~ 105 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PK-YDPKVREKALE 105 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CC-CCHHHHHHHHH
Confidence 4456788889999999999999999999999988776542 3444444444322 12 37788866553
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.31 E-value=35 Score=31.82 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC-CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~-~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
.++.+.|.+ ++-.+|-.+-.+.|.+.......+. .+.+|+=+..++- .+.+-++ +..|-+|.+|.++...|..- .
T Consensus 302 ~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~-ll~ERl~-D~~py~RtKalqv~~kifdl-~ 377 (1128)
T COG5098 302 EHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVG-LLVERLS-DTYPYTRTKALQVLEKIFDL-N 377 (1128)
T ss_pred HHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHH-HHHHHhh-ccchHHHHHHHHHHHHHHhC-c
Confidence 345666666 6677787666666666555443210 1223332222110 1222334 78899999998888776642 2
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
. -..+...++......+++|.+..||..|.+.++++.-
T Consensus 378 s-k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 378 S-KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred c-cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 1 1246678899999999999999999999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 6e-13
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 15/146 (10%)
Query: 49 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNI 108
+L +++ R + + +N + N + + +KS+ + +
Sbjct: 53 VLTKLKSEDEPTRS----LSGLILKNNVKAHFQNFPNG-VTDFIKSECLNNIGDSS---- 103
Query: 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE----- 163
I + + WP+ L L +S++ E A + E
Sbjct: 104 -PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 164 IFGNQESTYLVVIKQMLQQCLLPPNP 189
+ + L ++ Q +P
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSP 188
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-10
Identities = 18/193 (9%), Positives = 47/193 (24%), Gaps = 23/193 (11%)
Query: 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRR 62
+ + R +S ++L+ + + +KS+ + +
Sbjct: 54 LTKLKSEDEPTRSLSGLILKNNVKA----HFQNFPNGVTDFIKSECLNNIGDSS-----P 104
Query: 63 KICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK------ICDAA 116
I + + WP+ L L D+++ +
Sbjct: 105 LIRATVGILITTIASKGELQNWPDLLPK--------LCSLLDSEDYNTCEGAFGALQKIC 156
Query: 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVI 176
+ A L D + + Q + ++ A+ ++
Sbjct: 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 216
Query: 177 KQMLQQCLLPPNP 189
+ L P
Sbjct: 217 IENLFALAGDEEP 229
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 4e-12
Identities = 20/184 (10%), Positives = 49/184 (26%), Gaps = 45/184 (24%)
Query: 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIR 61
++ D +E R ++A+ L+ + + A +
Sbjct: 46 QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQV----------------- 88
Query: 62 RKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121
+N +K+ + L + I A +A
Sbjct: 89 -----------------------SPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIAD 124
Query: 122 NLIDDAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML 180
+ + WPE ++ + + +K ++L + E Q + +L
Sbjct: 125 I---ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181
Query: 181 QQCL 184
+
Sbjct: 182 IAIV 185
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 3e-08
Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 28/204 (13%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQ 53
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG 100
Query: 54 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKIC 113
A +A + N WPE + L+ N N +
Sbjct: 101 --TETYRPSSASQCVAGIAC---AEIPVNQWPELIPQ--------LVANVTNPNSTEHMK 147
Query: 114 DAAAEVARNLIDDAGNNLWPEF----LQFLFQCANSD--NTTLKESALRLFTSVPEIFGN 167
++ E + D + L + Q + + +K +A + E
Sbjct: 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207
Query: 168 QESTYLVV--IKQMLQQCLLPPNP 189
I Q++ + P+
Sbjct: 208 NFDKESERHFIMQVVCEATQCPDT 231
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-07
Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 14/160 (8%)
Query: 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID-------DAGNNLWPEFLQNNLK 93
NL + ++ L + N + AA +N + W N +
Sbjct: 30 VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89
Query: 94 SQIILLLQT-CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTT--L 150
+L T A +A + N WPE + L + N+T +
Sbjct: 90 EVKNYVLHTLGTETYRPSSASQCVAGIAC---AEIPVNQWPELIPQLVANVTNPNSTEHM 146
Query: 151 KESALRLFTSVPE-IFGNQESTYLVVIKQMLQQCLLPPNP 189
KES L + + I Q I + Q + P
Sbjct: 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-08
Identities = 23/204 (11%), Positives = 59/204 (28%), Gaps = 28/204 (13%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQ 53
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG 100
Query: 54 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKIC 113
A +A + N WPE + L+ N N +
Sbjct: 101 --TETYRPSSASQCVAGIAC---AEIPVNQWPELIPQ--------LVANVTNPNSTEHMK 147
Query: 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQ------CANSDNTTLKESALRLFTSVPEIFGN 167
++ E + D + + + +K +A + E
Sbjct: 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207
Query: 168 QESTYLVV--IKQMLQQCLLPPNP 189
I Q++ + P+
Sbjct: 208 NFDKESERHFIMQVVCEATQCPDT 231
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 4e-07
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI-------DDAGNNL 83
+ + AV + ++ +L N + R AA +N +
Sbjct: 23 KFLERAAVENLPTFLVELSRVLANPGNSQVARV---AAGLQIKNSLTSKDPDIKAQYQQR 79
Query: 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA 143
W N + +LQT + + A+ VA + N WPE + L
Sbjct: 80 WLAIDANARREVKNYVLQTLGTET--YRPSSASQCVAGIACAEIPVNQWPELIPQLVANV 137
Query: 144 NSDNTTL--KESALRLFTSV-PEIFGNQESTYLVVIKQMLQQCLLPPNP 189
+ N+T KES L + +I Q I + Q + P
Sbjct: 138 TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-05
Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 57/224 (25%)
Query: 7 AGRSVEERQMSAVLLR----------KIFSTDFIEIYS-KLAVNDQNNLKSQIIL-LLQT 54
+G++ ++ + KIF + S + + L QI
Sbjct: 161 SGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 55 CDN-DNIRRKICDAAAEVARNLI------------DDAGN-NLWPEFLQNNLKSQIILLL 100
D+ NI+ +I AE+ R L+ + N W F NL +I LL
Sbjct: 217 SDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI--LL 270
Query: 101 QTCDNDNIRRKICDA--AAEVARNLIDDAGNNLWP-EFLQFLFQCANSDNTTLKESAL-- 155
T +++ D AA +D L P E L + + L L
Sbjct: 271 TTRF-----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 156 --RLFTSVPEIFGNQEST---YLVV----IKQMLQQCL--LPPN 188
R + + E + +T + V + +++ L L P
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 199 | |||
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.83 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.82 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.79 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.74 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.57 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.43 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.39 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.37 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.37 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.34 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.34 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.34 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.34 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.33 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.3 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.27 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.2 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.15 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.14 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.09 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.08 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.89 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.87 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.81 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.73 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.73 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.71 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.71 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.69 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.69 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.67 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.66 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.65 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.65 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.63 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.6 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.6 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.57 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.53 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.52 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.5 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.48 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.43 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.43 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.38 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.31 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.27 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.18 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.17 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.15 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.13 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.05 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.01 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.94 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.94 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 97.92 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.9 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 97.85 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.84 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.8 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 97.78 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.76 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 97.72 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.62 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.55 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.55 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 97.53 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.51 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 97.5 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.43 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.4 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.39 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 97.37 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 97.35 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.17 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 97.12 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 97.08 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.93 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 96.91 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.84 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 96.81 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.79 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 96.74 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.63 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.59 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.55 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 96.53 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.49 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.31 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.11 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.09 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 95.86 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 95.65 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.48 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 95.45 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 95.32 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 95.31 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 95.24 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 95.18 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.1 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 94.56 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 94.55 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 94.5 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 93.48 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 93.16 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 92.48 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 91.43 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 91.17 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 90.9 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 90.59 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 89.16 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 89.04 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 88.07 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 86.56 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 86.33 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 85.12 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 84.73 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 84.44 |
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=166.95 Aligned_cols=176 Identities=11% Similarity=0.091 Sum_probs=152.0
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHH
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE 86 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe 86 (199)
.+.++.+|++||++|||.++.+ |..++++.|++||+.++++|.+ +++.||+++|.+++.+++.. +.+.||+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~----w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~----~~~~wp~ 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAH----FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKG----ELQNWPD 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTS----GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHT----TTTTCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhc----CccccHH
Confidence 4578999999999999999988 9999999999999999999997 78899999999999999986 3578999
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh----ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 87 FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA----GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 87 Ll~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
+++. ++..++ ++++.+|..++.++..++....+.. ....++.++|.+.++++++++.+|..|+.+++.++
T Consensus 129 ll~~-----L~~~l~-~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 129 LLPK-----LCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp HHHH-----HHHHHS-CSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred HHHH-----HHHHHc-CCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9998 556777 7788999999999999987765421 12458999999999999999999999999999988
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 163 EIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 163 e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+..+.++.+.+++.+...++|+ +++||..||+
T Consensus 203 ~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~ 237 (852)
T 4fdd_A 203 ISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCR 237 (852)
T ss_dssp TTTCHHHHTSHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 7665555666777778888888997 9999998874
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-19 Score=149.80 Aligned_cols=185 Identities=14% Similarity=0.212 Sum_probs=150.6
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh-------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF-------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~-------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
+++.+.+.++.+|++|+++|||.++.+| ...|..++++.+++||+.+++.|.+ +++.+ +++|.+++.+++.
T Consensus 42 ~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~ 119 (462)
T 1ibr_B 42 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT-ETYRP-SSASQCVAGIACA 119 (462)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHH
Confidence 4566665689999999999999998764 3459999999999999999999999 56677 9999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTL 150 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~--~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~v 150 (199)
..+ .+.||++++. |+..++ ++ ++.+|..++.++..++....+.....+.+.+++.+.++++++ ++.+
T Consensus 120 ~~~---~~~w~~ll~~-----L~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~v 190 (462)
T 1ibr_B 120 EIP---VNQWPELIPQ-----LVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190 (462)
T ss_dssp HGG---GTCCTTHHHH-----HHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHH
T ss_pred hcc---ccccHHHHHH-----HHHHhc-cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHH
Confidence 866 3689999998 566777 55 889999999999998875522233567789999999999988 7999
Q ss_pred HHHHHHHHHhhhHhhhhhhH--HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 151 KESALRLFTSVPEIFGNQES--TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 151 r~~a~~~l~~i~e~~~~~l~--~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|..|+++++.+++++.+.+. .+.+.+.+.+...+.++ +++||..+++
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~ 239 (462)
T 1ibr_B 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQ 239 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 99999999998877654432 12345667777788887 9999988874
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=152.85 Aligned_cols=186 Identities=15% Similarity=0.176 Sum_probs=151.7
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh-------Hhhhhc-cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF-------IEIYSK-LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~-------~~~~~~-l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~ 73 (199)
+++.+.+.++.+|++|+++|||.++.+| ...|.. ++++.+.+||+.+++.|.+ +++.+|++++.+++.+++
T Consensus 46 ~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~ 124 (861)
T 2bpt_A 46 QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIAD 124 (861)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHH
Confidence 3556665789999999999999997764 345886 9999999999999999999 678899999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHhHhhh--ccCChHHHHHHHHHHhcCC--CH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDA--GNNLWPEFLQFLFQCANSD--NT 148 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~-~~~vr~~a~~~i~~i~~~~~~~~--~~~~~~~ll~~l~~~~~~~--~~ 148 (199)
..++ .+.||++++. |+..+. ++ ++.+|..++.++..++....+.. ...+.+.+++.+.+++.++ ++
T Consensus 125 ~~~p---~~~w~~ll~~-----L~~~l~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 195 (861)
T 2bpt_A 125 IELP---HGAWPELMKI-----MVDNTG-AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195 (861)
T ss_dssp HHGG---GTCCHHHHHH-----HHHHTS-TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred hhCc---ccccHHHHHH-----HHHHHh-cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 9876 3589999998 556777 45 88999999999988886543211 2357789999999999987 89
Q ss_pred HHHHHHHHHHHhhhHhhhhhhH--HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 149 TLKESALRLFTSVPEIFGNQES--TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 149 ~vr~~a~~~l~~i~e~~~~~l~--~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+|..|+++++.+++++...+. .+.+.+++.+...++++ ++++|..|++
T Consensus 196 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~ 246 (861)
T 2bpt_A 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFG 246 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 9999999999998877665432 23456777777888887 9999988874
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-17 Score=146.59 Aligned_cols=185 Identities=14% Similarity=0.229 Sum_probs=150.2
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchh-------hHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTD-------FIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~-------~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
+++.+.+.++.+|++|+++||+.+..+ +...|..++++.+++||..+++.|.+ +++.+ ++++.+++.+++.
T Consensus 42 ~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~ 119 (876)
T 1qgr_A 42 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACA 119 (876)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHh
Confidence 345665568999999999999988643 24669999999999999999999998 56667 9999999999998
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTL 150 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~--~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~v 150 (199)
..+ ...||++++. ++..+. ++ ++.+|..++.++..++....++....+.+.+++.+.+++.++ ++.+
T Consensus 120 ~~~---~~~w~~ll~~-----l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~v 190 (876)
T 1qgr_A 120 EIP---VNQWPELIPQ-----LVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 190 (876)
T ss_dssp HGG---GTCCTTHHHH-----HHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHH
T ss_pred hCc---ccccHHHHHH-----HHHHHh-CCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHH
Confidence 765 4789999998 556777 56 889999999999998875422223567899999999999987 7899
Q ss_pred HHHHHHHHHhhhHhhhhhhH--HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 151 KESALRLFTSVPEIFGNQES--TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 151 r~~a~~~l~~i~e~~~~~l~--~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
|..|+++++.+++++++.+. ...+.+++.+...++++ +++||..|++
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~ 239 (876)
T 1qgr_A 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQ 239 (876)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 99999999999987765542 22345777778888887 8999988875
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-14 Score=130.95 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=126.5
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhHhhhh------ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYS------KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 75 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~------~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~ 75 (199)
+++.+.+.+.++|++||++|||.++.+ |. .++++.|++||+.+++++.+++ +.||+++|.+++.|++..
T Consensus 42 ~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d 116 (960)
T 1wa5_C 42 HVIASTNLPLSTRLAGALFFKNFIKRK----WVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSD 116 (960)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhc----CCCcccCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhh
Confidence 455666678999999999999999998 76 7999999999999999999955 999999999999999998
Q ss_pred cCcCCCCChHHHHHHHHHH----------H-------H----------------------------HHHHh------hcc
Q psy15255 76 IDDAGNNLWPEFLQNNLKS----------Q-------I----------------------------ILLLQ------TCD 104 (199)
Q Consensus 76 l~~~~~~~WpeLl~~~ik~----------~-------l----------------------------l~~l~------~~~ 104 (199)
++ +.||+|++.++.. . + +..+. .++
T Consensus 117 ~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~ 192 (960)
T 1wa5_C 117 FP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITAN 192 (960)
T ss_dssp ST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred Cc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 76 6899999886621 0 0 01110 000
Q ss_pred cH---HHHHHHHHH---HHHHHHHhH----hhhccCChHHHHHHHHHHhcCC------C---------HHHHHHHHHHHH
Q psy15255 105 ND---NIRRKICDA---AAEVARNLI----DDAGNNLWPEFLQFLFQCANSD------N---------TTLKESALRLFT 159 (199)
Q Consensus 105 ~~---~vr~~a~~~---i~~i~~~~~----~~~~~~~~~~ll~~l~~~~~~~------~---------~~vr~~a~~~l~ 159 (199)
.. .++ .+.++ +..+...+. +.....+.+..++.+.+.+... + +.+|..+++++.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~ 271 (960)
T 1wa5_C 193 ENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQ 271 (960)
T ss_dssp C--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHH
Confidence 00 111 01111 111111110 1111123344556666655321 1 357889999999
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHhhC----CCCCHHHhhhhhcC
Q psy15255 160 SVPEIFGNQESTYLVVIKQMLQQCLL----PPNPYSVQALQLKF 199 (199)
Q Consensus 160 ~i~e~~~~~l~~~~~~l~~~l~~~l~----d~~~~~Vr~~A~~f 199 (199)
.+++..++.+.+|...+++.+...+. ...+++++..|++|
T Consensus 272 ~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 272 LYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 99998888888888888777766653 12267899998876
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-13 Score=122.97 Aligned_cols=148 Identities=12% Similarity=0.216 Sum_probs=113.8
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHh
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--------NDNIRRKICDAAAEVARN 74 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--------~~~vR~~~~~~ia~la~~ 74 (199)
++.++ .++.+|++|+++||+.++.+ |..++++.|.+||+.+++.+.+++ ++.||+++|.+++.|++.
T Consensus 56 iL~~s-~~~~vr~~aa~~Lk~~i~~~----W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~ 130 (1049)
T 3m1i_C 56 ILQFS-TNPQSKFIALSILDKLITRK----WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1049)
T ss_dssp HHHHC-SCHHHHHHHHHHHHHHHHHT----GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhhC-CCHHHHHHHHHHHHHHHHhh----CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 44444 68999999999999999988 999999999999999999999854 478999999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh---------------hhccCChHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---------------DAGNNLWPEFLQFL 139 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~---------------~~~~~~~~~ll~~l 139 (199)
..+ +.||++++. ++..++ +++..+..+..++..+.....+ +....+.+.+++.+
T Consensus 131 ~~p----~~Wp~ll~~-----L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~ 199 (1049)
T 3m1i_C 131 EWP----QNWPEFIPE-----LIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1049)
T ss_dssp HTT----TTCTTHHHH-----HHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCc----ccchHHHHH-----HHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 865 689999998 445554 3444454555555544433321 01123467788888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHhhhHhhh
Q psy15255 140 FQCANS-DNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 140 ~~~~~~-~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.+++++ +++.++..+++++..++...+
T Consensus 200 ~~~l~~~~~~~~~~~aL~~l~~~l~wi~ 227 (1049)
T 3m1i_C 200 FQVLEQGSSSSLIVATLESLLRYLHWIP 227 (1049)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhCC
Confidence 888864 478899999999998877665
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=107.67 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCC------
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAG------ 80 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~------ 80 (199)
+++..+|..|---|++.-.. ....+-..|++.+.+.+ +..+|.. ++.++|+.++..+
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~------------~~~~~~~~L~~il~~~~~~~~vR~~----a~~~Lk~~i~~~~~~~~~~ 75 (462)
T 1ibr_B 12 SPDRLELEAAQKFLERAAVE------------NLPTFLVELSRVLANPGNSQVARVA----AGLQIKNSLTSKDPDIKAQ 75 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHCTTSCHHHHHH----HHHHHHHHHCCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh------------ChHHHHHHHHHHHHcCCCChHHHHH----HHHHHHHhccccchHHHHH
Confidence 45677888877777663321 12234456777887743 6778885 5566777665321
Q ss_pred -CCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHH
Q psy15255 81 -NNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESA 154 (199)
Q Consensus 81 -~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a 154 (199)
.+.|+.+ .+..+|+.++..+. ++++.+ +.++.+++.|+....+ .+.||+++|.++++++++ ++.+|+.|
T Consensus 76 ~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~---~~~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 76 YQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhcc---ccccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 1235544 55678889999998 566677 8899999999987654 358999999999999998 99999999
Q ss_pred HHHHHhhhHhh-hhhhHHHHHHHHHHHHHhhCCCC-CHHHhhhhhc
Q psy15255 155 LRLFTSVPEIF-GNQESTYLVVIKQMLQQCLLPPN-PYSVQALQLK 198 (199)
Q Consensus 155 ~~~l~~i~e~~-~~~l~~~~~~l~~~l~~~l~d~~-~~~Vr~~A~~ 198 (199)
+.+++.+++.. ++.+.++.+.+.+.+..+++|++ +++||.+|++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999876 44467888899999999999964 6899988863
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-12 Score=119.20 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
++|..+|.+|.--|.+.+..+ ...+++.....+...+++.|.+ +++.+|+.++.+++.+++.. + ...|+.+
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~----~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~-~---~~~~~~i 87 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV-K---EYQVETI 87 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS-C---HHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHccc----ccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC-C---HHHHHHH
Confidence 478999999988888887665 4456677778888899999998 89999999999999998643 2 2456666
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-----hccCChHHHHHHHHHHhc-CCCHHHHHHHHHHHHhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD-----AGNNLWPEFLQFLFQCAN-SDNTTLKESALRLFTSV 161 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~-----~~~~~~~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i 161 (199)
++. ++..+. ++++.+|..++.++..++..+.+. .....|++++|.+++++. ++++.+|..|+.+++.+
T Consensus 88 ~~~-----Ll~~l~-d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 88 VDT-----LCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHH-----HHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHhc-CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 665 666777 777889999999999988765431 011369999999999998 48999999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++..++.+.+|.+.+++.+..++.|+ ++.||..|+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~ 196 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTI 196 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHH
Confidence 99888878889999999999999997 899998876
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.8e-12 Score=115.52 Aligned_cols=147 Identities=11% Similarity=0.148 Sum_probs=105.8
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHhhcCcCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAG 80 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--~~~vR~~~~~~ia~la~~~l~~~~ 80 (199)
++..+ .++++|++|+++||+.++.+ |..++++.+.++|+.+++.+.++. .+.||+++|.+++.|++...+
T Consensus 47 lL~~~-~~~~vr~~aa~~L~~~i~~~----w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--- 118 (971)
T 2x1g_F 47 LMQLG-KSQEVQFFGAITLHSKLMKH----WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--- 118 (971)
T ss_dssp HTCTT-SCHHHHHHHHHHHHHHHHHC----GGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHhcC-CcHHHHHHHHHHHHHHHHcc----HhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc---
Confidence 34443 78999999999999999998 999999999999999999999853 689999999999999999754
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHHHHHHHHhHh-----------hhccCChHHHHHHHHHHhc
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCD-----NDNIRRKICDAAAEVARNLID-----------DAGNNLWPEFLQFLFQCAN 144 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~-----~~~vr~~a~~~i~~i~~~~~~-----------~~~~~~~~~ll~~l~~~~~ 144 (199)
.||++++. ++..++... ++..+..+..++..+...... +......+.+++.+.++++
T Consensus 119 --~Wp~~l~~-----l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~ 191 (971)
T 2x1g_F 119 --EWPGAIEE-----VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLK 191 (971)
T ss_dssp --C------H-----HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred --cccHHHHH-----HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999987 445665211 445555566666655533211 1123467888888888875
Q ss_pred CC-C-------HHHHHHHHHHHHhhhHh
Q psy15255 145 SD-N-------TTLKESALRLFTSVPEI 164 (199)
Q Consensus 145 ~~-~-------~~vr~~a~~~l~~i~e~ 164 (199)
+. + +.++..+++++..++..
T Consensus 192 ~~~~~~~~~~~~~~~~~al~~l~~~~~~ 219 (971)
T 2x1g_F 192 LQMNRVWDAEAYSNMNRAVKCVGTWIKN 219 (971)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccchhHHHHHHHHHHHHHhh
Confidence 32 2 27899999999988773
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=107.10 Aligned_cols=174 Identities=18% Similarity=0.176 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHhhcchh---------------------h----------HhhhhccCHhhHHHHHHHHHHHHhcCCc
Q psy15255 9 RSVEERQMSAVLLRKIFSTD---------------------F----------IEIYSKLAVNDQNNLKSQIILLLQTCDN 57 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~---------------------~----------~~~~~~l~~~~~~~ik~~ll~~L~~e~~ 57 (199)
.++.+|..|+-.|.+..... + ..++..+++..+..+...+.+++.+ ++
T Consensus 99 ~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~ 177 (588)
T 1b3u_A 99 EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-DT 177 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTC-SC
T ss_pred chHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCC-CC
Confidence 57888888887777754321 0 1234455666777888888888888 89
Q ss_pred hhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHH
Q psy15255 58 DNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQ 137 (199)
Q Consensus 58 ~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~ 137 (199)
+.||..++..++.+++..=+ ...+++++|. ++.++. ++++.+|..++.++..++....+ ....+.++|
T Consensus 178 ~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~-----l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~ 245 (588)
T 1b3u_A 178 PMVRRAAASKLGEFAKVLEL---DNVKSEIIPM-----FSNLAS-DEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMP 245 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCH---HHHHHTHHHH-----HHHHHT-CSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhcH---HhHHHHHHHH-----HHHHhc-CCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 99999999999999876411 2234667775 445666 78899999999999998876533 124577899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 138 FLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.++++|++|.+|.+|+.+++.+++..+++ .+.+.+.+.+...++|+ +++||..|++
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~a~~ 303 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDC-EAEVRAAASH 303 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 9999999999999999999999999887554 24566788888899997 9999988763
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=110.91 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=122.6
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHhhcCcCC
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAG 80 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--~~~vR~~~~~~ia~la~~~l~~~~ 80 (199)
++.+ +.++.+|++|+++||+.++.+ |..++++.+..+|+.+++.+.+.+ .+.||+++|.+++.|++...+
T Consensus 65 lL~~-~~~~~vr~~aa~~L~~~i~~~----w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p--- 136 (963)
T 2x19_B 65 LLQP-DKVPEIQYFGASALHIKISRY----WSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP--- 136 (963)
T ss_dssp HTST-TSCHHHHHHHHHHHHHHHHHC----GGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT---
T ss_pred HhcC-CCchHHHHHHHHHHHHHHHhC----HHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc---
Confidence 3444 478999999999999999999 999999999999999999999853 589999999999999999875
Q ss_pred CCChHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHhHhh------------hccCChHHHHHHHHHHhc
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVARNLIDD------------AGNNLWPEFLQFLFQCAN 144 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~----~~~~vr~~a~~~i~~i~~~~~~~------------~~~~~~~~ll~~l~~~~~ 144 (199)
..||++++. ++.+++.+ +++..+..+..++..+...+.+. ......|.+++.+.++++
T Consensus 137 -~~Wp~~l~~-----l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~ 210 (963)
T 2x19_B 137 -DAWPCAVAD-----MVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQ 210 (963)
T ss_dssp -TTSTTHHHH-----HHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHS
T ss_pred -cccchHHHH-----HHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 359999997 55566520 24445556666666555433210 112456889999999887
Q ss_pred CCC--HHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 145 SDN--TTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 145 ~~~--~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+ ..++..+++++...+. .+..+. ..+.+++.+.+++.++ ++|.+|+
T Consensus 211 ~~~~~~~~~~~~l~~l~~wi~-~~~~~~-~~~~ll~~l~~~l~~~---~~~~~a~ 260 (963)
T 2x19_B 211 QPSSPSCVRQKVLKCFSSWVQ-LEVPLQ-DCEALIQAAFAALQDS---ELFDSSV 260 (963)
T ss_dssp CTTCCHHHHHHHHHHHHHHHT-SSCCGG-GTHHHHHHHHHHTTST---TTHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHc-CCCCcc-cchHHHHHHHHHhCCc---hHHHHHH
Confidence 652 2478888988876554 322221 1134445555565433 4555444
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-11 Score=107.04 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCC-------
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAG------- 80 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~------- 80 (199)
++...|..|---|++.-..+ ....-..|++.+.++ .+..+|. .++.++++.++..+
T Consensus 17 ~d~~~r~~Ae~~L~~~~~~~------------~~~~~~~l~~il~~~~~~~~vR~----~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 17 PDQNIRLTSETQLKKLSNDN------------FLQFAGLSSQVLIDENTKLEGRI----LAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHTCTTSCHHHHH----HHHHHHHTTTCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHhCCCCChHHHH----HHHHHHHhhccCcChHHHHHH
Confidence 56667777766666643211 123344577888774 4677777 57788888876432
Q ss_pred CCChHH-H---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHH
Q psy15255 81 NNLWPE-F---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESAL 155 (199)
Q Consensus 81 ~~~Wpe-L---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~ 155 (199)
.+.|+. + ....+|+.++..+. ++++.+|+.++.+++.|+....+ .+.||++++.+.+.++++ ++.+|+.|+
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p---~~~w~~ll~~L~~~l~~~~~~~~r~~al 156 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELP---HGAWPELMKIMVDNTGAEQPENVKRASL 156 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGG---GTCCHHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCc---ccccHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 234775 5 55678899999998 77789999999999999987654 358999999999999998 999999999
Q ss_pred HHHHhhhHhhhhh---hHHHHHHHHHHHHHhhCCCC-CHHHhhhhhc
Q psy15255 156 RLFTSVPEIFGNQ---ESTYLVVIKQMLQQCLLPPN-PYSVQALQLK 198 (199)
Q Consensus 156 ~~l~~i~e~~~~~---l~~~~~~l~~~l~~~l~d~~-~~~Vr~~A~~ 198 (199)
.+++.+++.++.. +.++.+.|++.+..++.|++ +++||.+|++
T Consensus 157 ~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~ 203 (861)
T 2bpt_A 157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALN 203 (861)
T ss_dssp HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 9999999877655 46788899999999999853 7889988864
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=111.66 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcC-------
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDA------- 79 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~------- 79 (199)
+++.++|+.|...|++... +.+..+...|++.|.++ .++.+|.. ++.++++.+...
T Consensus 12 s~d~~~r~~A~~~L~~~~~------------~~~~~~~~~L~~~l~~~~~~~~vR~~----a~~~Lk~~i~~~~~~~~~~ 75 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAAV------------ENLPTFLVELSRVLANPGNSQVARVA----AGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHCTTSCHHHHHH----HHHHHHHHHCCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh------------cChhhHHHHHHHHHhCCCCCHHHHHH----HHHHHHHhccccchHhHHH
Confidence 4688999999999987432 23456777889999885 35677774 556666655422
Q ss_pred CCCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHH
Q psy15255 80 GNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESA 154 (199)
Q Consensus 80 ~~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a 154 (199)
....|+.+ ....+|+.++..+. ++++.+ +.++.+++.|+....+ ..+||+++|.+.+.++++ ++.+|+.+
T Consensus 76 ~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~~i~~~~~~---~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 76 YQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHHHHHHhhCc---ccccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 13568776 56688889999998 566667 8899999999987543 478999999999999998 99999999
Q ss_pred HHHHHhhhHhhh-hhhHHHHHHHHHHHHHhhCCCC-CHHHhhhhhc
Q psy15255 155 LRLFTSVPEIFG-NQESTYLVVIKQMLQQCLLPPN-PYSVQALQLK 198 (199)
Q Consensus 155 ~~~l~~i~e~~~-~~l~~~~~~l~~~l~~~l~d~~-~~~Vr~~A~~ 198 (199)
+.+++.+++.+. +.+.++.+.+++.+..++.+++ +++||..|++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (876)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 999999998764 3367788899999999999863 5889988764
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=116.35 Aligned_cols=177 Identities=11% Similarity=0.180 Sum_probs=127.1
Q ss_pred ccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHhhcC
Q psy15255 4 IQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC------DNDNIRRKICDAAAEVARNLID 77 (199)
Q Consensus 4 ~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e------~~~~vR~~~~~~ia~la~~~l~ 77 (199)
|.+.+.++.+|++|+++||+.+..+ |..++++.|.+||+.+++.+.++ +.+.||+++|.+++.|++...+
T Consensus 54 L~~~s~~~~vR~~A~~~Lk~~I~~~----W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 54 LAEKTQVAIVRHFGLQILEHVVKFR----WNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp HTSTTSCHHHHHHHHHHHHHHHHHS----GGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHh----cccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc
Confidence 3344578999999999999999988 99999999999999999999875 4689999999999999999765
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh-------------hccCChHHHHHHHHHHhc
Q psy15255 78 DAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD-------------AGNNLWPEFLQFLFQCAN 144 (199)
Q Consensus 78 ~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~-------------~~~~~~~~ll~~l~~~~~ 144 (199)
+.||++++. ++.+++ .++..+..++.++..+.....+. ......+++++.+.+.++
T Consensus 130 ----~~Wp~ll~~-----L~~~~~--~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~ 198 (1204)
T 3a6p_A 130 ----QHWPDMLIE-----LDTLSK--QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ 198 (1204)
T ss_dssp ----TTCTTHHHH-----HHHHHH--TCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ----ccchHHHHH-----HHHHhc--CCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999997 445555 24455556666666655432210 012235677777777765
Q ss_pred C-------------------CCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 145 S-------------------DNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 145 ~-------------------~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+ ++..++..+++++..+++..+-.+ ....+.+++.+..++.+ +++|.+|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~e 269 (1204)
T 3a6p_A 199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE---QELQLGAAE 269 (1204)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC---TTTHHHHHH
T ss_pred HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC---HHHHHHHHH
Confidence 3 234577889999988887765432 12112466666666654 457777764
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=90.69 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=132.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~-~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
.+-..|..|..-|...+.... .+.......+-..+...|. + ++..||..++.+++.+++.+-+ .....++.+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~-----~~~~~~~~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~-~~~~~~~~i 99 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHP-----KLENGEYGALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAK-RFSNYASAC 99 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCS-----SBCCCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGG-GGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCC-----CCCCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 567899999999998886521 1112222456667888885 7 8999999999999999987522 223455666
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
+|. ++..+. ++++.+|..++.++..++.. ...+.++|.+...+++.+|.+|..++..++.++...+.
T Consensus 100 lp~-----ll~~l~-d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 100 VPS-----LLEKFK-EKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHH-----HHHGGG-CCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHH-----HHHHHc-CCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 776 667777 88999999999988877642 24678999999999999999999999999998877643
Q ss_pred h--hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 168 Q--ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 168 ~--l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+ ..++.+.+++.+..++.|+ +++||.+|.+
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~ 198 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEP-DPTVRDSSAE 198 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSS-CHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 2 4678899999999999997 9999998864
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-11 Score=108.16 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=137.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..++..+....+.++...|+. +-..+.+.+.+ ++..+|..+..+++.+.+..-+. .-...+
T Consensus 102 ~~~~vr~~~a~~i~~ia~~~~~~~wp~--------ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 102 SSPLIRATVGILITTIASKGELQNWPD--------LLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTTTCTT--------HHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccHH--------HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 567899999999999887764455653 44556777887 78899999999999888765321 112336
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
+.+++. ++++++ ++++.+|..|+.++..++.... ......++++++.+++.++|+++.+|..|+.+++.+++.
T Consensus 173 ~~il~~-----l~~~l~-~~~~~vR~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 173 NIMIPK-----FLQFFK-HSSPKIRSHAVACVNQFIISRT-QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp HHHHHH-----HTTTTT-CSSHHHHHHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHhc-CCCHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 666665 555677 8899999999999876654221 122367889999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 165 FGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 165 ~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
.++.+.+|.+.+++.+..+++|+ +++||..|++|
T Consensus 246 ~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~ 279 (852)
T 4fdd_A 246 RMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEF 279 (852)
T ss_dssp CHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHH
Confidence 88888899999999999999997 99999999876
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-09 Score=85.53 Aligned_cols=177 Identities=10% Similarity=0.082 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHHHHh-hcchhhHhhhhccC--HhhHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHHhhcCcCCC-CC
Q psy15255 9 RSVEERQMSAVLLRK-IFSTDFIEIYSKLA--VNDQNNLKSQIILLL-QTCDNDNIRRKICDAAAEVARNLIDDAGN-NL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~-~~~~~~~~~~~~l~--~~~~~~ik~~ll~~L-~~e~~~~vR~~~~~~ia~la~~~l~~~~~-~~ 83 (199)
.+-..|.-|..-|.. .+.+. .++. ...-..+-..+.+.| .+ ++..||..++++++.+++.+=..... ..
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~-----~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQT-----KKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGC-----CCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcC-----CccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 456677777777777 66432 1222 222234566778888 56 89999999999999999776301222 22
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
-..++|. ++..+. +..+.|+..+..++..++....+.....+.+.+++.++..+++++|.+|+.++..++.+++
T Consensus 102 ~~~llp~-----ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 102 VSLVFTP-----LLDRTK-EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHH-----HHHGGG-CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 2445665 666776 7788999988888888777542211012378999999999999999999999999999998
Q ss_pred hhh---hhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 164 IFG---NQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 164 ~~~---~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+ ..+.++. +.+++.+..++.|+ +++||.+|++
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~ 213 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFE 213 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 876 4477888 99999999999997 9999998864
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7.2e-10 Score=103.39 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=125.6
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHH
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQT--------CDNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~--------e~~~~vR~~~~~~ia~la~ 73 (199)
+++.++ .++.+|.+|+.+|++.++.+ |..++++.+..+|+.+++.+.. ++++.+++++|.+++.+++
T Consensus 67 ~iL~~s-~~~~vR~fAa~~L~~~I~~~----W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k 141 (1073)
T 3gjx_A 67 TILEFS-QNMNTKYYGLQILENVIKTR----WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILK 141 (1073)
T ss_dssp CC---C-CSHHHHHHHHHHHHHHHHHT----GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHHHhh----hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHH
Confidence 345454 78999999999999999999 9999999999999999999975 2467899999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh---------------hhccCChHHHHHH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---------------DAGNNLWPEFLQF 138 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~---------------~~~~~~~~~ll~~ 138 (199)
...+ ..||++++.++ ..++ .++..+...+.++..+...+.+ +.....+|.+++.
T Consensus 142 ~~~P----~~Wp~fi~dLv-----~~~~--~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~l 210 (1073)
T 3gjx_A 142 QEWP----KHWPTFISDIV-----GASR--TSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQL 210 (1073)
T ss_dssp HHTT----TTCTTHHHHHH-----HHHH--HCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCh----hhccHHHHHHH-----HHhC--CCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9876 46999988744 3443 2333344444444444443211 1122467889999
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHH-HHhhCCCCCHHHhhhhhc
Q psy15255 139 LFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQML-QQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 139 l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l-~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+++++ .++.+...+++++..+.+.++-...- .+.+++.+ ...+. ++++|.+|++
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~-~~~ll~~L~~~~L~---~~~~r~aA~d 268 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLNWIPLGYIF-ETKLISTLIYKFLN---VPMFRNVSLK 268 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHH-SSSHHHHHHHHTSS---SHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhc-cchHHHHHHHHhcC---ChHHHHHHHH
Confidence 9888864 58888899999999999887644211 02344444 45553 5578888774
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-10 Score=105.62 Aligned_cols=171 Identities=12% Similarity=0.122 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC-----CCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-----GNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~-----~~~~ 83 (199)
.++.+|+.|+..|.+... .++++....++..++..|.+ +++.+|..++.+++.++..+-+.. ....
T Consensus 60 ~~~~vR~~A~~~L~~l~~--------~~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVS--------KVKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 578899999988887753 45667788999999999999 778899999999999998753310 0135
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
|++++|. |+.++...++..+|..+++++..++....+ ....+.+.+++.++..+.++++.+|..|+.+++.+++
T Consensus 131 ~~~llp~-----L~~~l~~~~~~~~~~~al~~l~~~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 131 CKKITGR-----LTSAIAKQEDVSVQLEALDIMADMLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHH-----HHHHHSCCSCHHHHHHHHHHHHHHHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-----HHHHHcCCCchHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9999998 556776336789999999999998865432 2345789999999999999999999999999999998
Q ss_pred hhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 164 IFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 164 ~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..++.+ ...++.+...+ .++++..+|..|++
T Consensus 205 ~~~~~~~~~~l~~l~~~L----~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 205 SCGNIVFVDLIEHLLSEL----SKNDSMSTTRTYIQ 236 (1230)
T ss_dssp TC----CTTHHHHHHHHH----HHTCSSCSCTTHHH
T ss_pred hcCHHHHHHHHHHHHHHh----ccCCchhHHHHHHH
Confidence 877653 22233333333 32223456666553
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=94.19 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=76.5
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+..++. ++++.||..+++.++.++....+ ...++.++|.+..+++|+++.+|..|+.+++.+++..+++ .+.+.
T Consensus 169 l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 242 (588)
T 1b3u_A 169 FRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEAL 242 (588)
T ss_dssp HHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHH
Confidence 334555 88999999999999988865432 1346889999999999999999999999999999887653 34456
Q ss_pred HHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+.+...+.|+ +..||.+|++
T Consensus 243 ~~~~l~~~~~d~-~~~vR~~a~~ 264 (588)
T 1b3u_A 243 VMPTLRQAAEDK-SWRVRYMVAD 264 (588)
T ss_dssp THHHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHHHHccCC-CHHHHHHHHH
Confidence 777888888897 9999988874
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-10 Score=102.80 Aligned_cols=176 Identities=14% Similarity=0.221 Sum_probs=122.3
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcC---C-----chhHHHHHHHHHHHHHHh
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTC---D-----NDNIRRKICDAAAEVARN 74 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e---~-----~~~vR~~~~~~ia~la~~ 74 (199)
++.++ .++.+|.+|+.+||+.++.+ |..++++.+..+|+.+++.+... + .+.+|+++|.+++.+++.
T Consensus 56 iL~~s-~~~~vR~faa~~Lk~~I~~~----W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~ 130 (1023)
T 4hat_C 56 ILQFS-TNPQSKFIALSILDKLITRK----WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1023)
T ss_dssp HHHHC-CCHHHHHHHHHHHHHHHHHH----GGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHHHHhh----hhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 34444 68999999999999999999 99999999999999999999763 1 467899999999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh---------------hhccCChHHHHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID---------------DAGNNLWPEFLQFL 139 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~---------------~~~~~~~~~ll~~l 139 (199)
..+ ..||++++. ++..++ .++..+...+.++..+...+.+ +......|.+++.+
T Consensus 131 ~~p----~~Wp~~l~d-----L~~~l~--~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll 199 (1023)
T 4hat_C 131 EWP----QNWPEFIPE-----LIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1023)
T ss_dssp HTT----TTCTTHHHH-----HHHHTT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCh----hhchHHHHH-----HHHHhc--CCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 579999987 445554 2333333334444443333221 01123467888888
Q ss_pred HHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH-HhhCCCCCHHHhhhhhc
Q psy15255 140 FQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ-QCLLPPNPYSVQALQLK 198 (199)
Q Consensus 140 ~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~-~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+++ .++.+...+++++...+..++-...- .+.+++.+. .++. ++++|.+|++
T Consensus 200 ~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~-~~~ll~~l~~~~L~---~~~~r~~A~e 256 (1023)
T 4hat_C 200 FQVLEQGASSSLIVATLESLLRYLHWIPYRYIY-ETNILELLSTKFMT---SPDTRAITLK 256 (1023)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH-SSSHHHHHHTHHHH---SHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc-chhHHHHHHHHHcC---CHHHHHHHHH
Confidence 888864 47788899999999998876543210 023444444 4553 3457766653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.9e-08 Score=74.66 Aligned_cols=137 Identities=10% Similarity=0.057 Sum_probs=108.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
+.+.+.+ .+-..|+.+...++.+++..-+ -......++++. +...+..+++..||..++.++..++..+.+ .
T Consensus 20 l~~~l~s-~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~-----L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~ 91 (242)
T 2qk2_A 20 FYDKLEE-KKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSA-----LKKVITKDSNVVLVAMAGKCLALLAKGLAK-R 91 (242)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHH-----HHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-G
T ss_pred HHhhhcc-CCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHH-----HHHHhccCCCHHHHHHHHHHHHHHHHHHhh-h
Confidence 6677777 8999999999999999876211 112445777765 445663378999999999999999987654 2
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
...+++.++|.++..+.|+++.+|++|..++..+++..+ .+.+++.+...+++. ++.||..++.|
T Consensus 92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~-~~~vr~~~l~~ 156 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK-NPSVKSETALF 156 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 356889999999999999999999999999999987642 355667778888997 99999988753
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-09 Score=78.77 Aligned_cols=174 Identities=17% Similarity=0.099 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|+++...+.+.. .. -.....-..+++.|.+ +++.+|..++.+++.++...-.. ...+..
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~-~~---i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQI-QA---VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHH-HH---HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH-HH---HHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 678999999999999875431111 10 1112345678888988 78999999999999887321000 001122
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
|. |+.++. ++++.+|..++.++..++....+....-.-...++.|.+.+.++++.+|+.|+.+++.++..
T Consensus 99 ~~---------L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 99 PA---------LVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HH---------HHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HH---------HHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22 556777 78899999999999988742221000000134788999999999999999999999999875
Q ss_pred hhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-++..... ....++.+...+.++ +++||..|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~ 202 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQE 202 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHH
Confidence 33322211 235677788888887 9999988864
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-07 Score=86.61 Aligned_cols=175 Identities=9% Similarity=0.127 Sum_probs=114.9
Q ss_pred cccccCC-CHHHHHHHHHHHHhhcchhhHhhhhccCHh----hHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHH
Q psy15255 3 IIQDAGR-SVEERQMSAVLLRKIFSTDFIEIYSKLAVN----DQNNLKSQIILLLQTC----DNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 3 ~~~~~~~-~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~----~~~~ik~~ll~~L~~e----~~~~vR~~~~~~ia~la~ 73 (199)
++.++.. ++.+|.+|+.+|++.++ .++++ .+.++|+.+++.+... ..+.||+|+|.+++.+++
T Consensus 48 iL~~~~~~~~~vr~fa~~~L~~~I~--------~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 48 IFSEKTKYKPSTRLICLQTLSEKVR--------EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp HTTCTTTSCHHHHHHHHHHHHHHHH--------HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHH--------hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 4445433 79999999999999986 58889 9999999999999962 467899999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-----------------c-cCChHHH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-----------------G-NNLWPEF 135 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-----------------~-~~~~~~l 135 (199)
...+ ..||++++. ++.+++..+....-...+.++..|...+.+.. . .+..+.+
T Consensus 120 ~~~p----~~Wp~~i~~-----l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i 190 (980)
T 3ibv_A 120 QLYP----SNWNDFFAS-----LQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDI 190 (980)
T ss_dssp HHTT----TTCTTHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhCc----ccCchHHHH-----HHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHH
Confidence 9765 689999887 45566522211111112222222222211100 0 0112233
Q ss_pred HHHHH----HHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 136 LQFLF----QCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 136 l~~l~----~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+..+ ++.+++++.++..++++++..+..++-.+.-. +.+++.+..++.+ +++|.+||+
T Consensus 191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~~l~~~L~~---~~~r~~A~e 253 (980)
T 3ibv_A 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMNLLYSFLQI---EELRCAACE 253 (980)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHHHHHHHTTS---HHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHHHHHHHcCC---hHHHHHHHH
Confidence 33333 33344788899999999999998776553211 4566667777765 578888875
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=84.91 Aligned_cols=179 Identities=13% Similarity=0.058 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQN-NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~-~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
.++.+|..|+..||+.++... ......-.+. .+...|++.|.+++++.+|..++.+++.++...-+....-..+.+
T Consensus 32 ~~~~~r~~A~~~L~~l~~~~~---~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 108 (450)
T 2jdq_A 32 KSPEQQLSATQKFRKLLSKEP---NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGA 108 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHSSS---SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhcCCC---CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCC
Confidence 678999999999999875320 1111111223 567788899999558999999999999988521000000001223
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~ 166 (199)
++. |+.++. ++++.+|..++.++..++....+....-.-...++.+.+.+.+ +++.+|..|+.+++.++....
T Consensus 109 i~~-----L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 109 VPI-----FIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp HHH-----HHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHH-----HHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 443 556777 7889999999999998875321100000002457778888885 799999999999999996541
Q ss_pred hh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 167 NQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 167 ~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+. -......+++.+...+.++ |++|+..|+
T Consensus 183 ~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~ 213 (450)
T 2jdq_A 183 PPPEFAKVSPCLNVLSWLLFVS-DTDVLADAC 213 (450)
T ss_dssp SCCCGGGTGGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHccC-CHHHHHHHH
Confidence 11 1122245566677778886 889988775
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-08 Score=75.62 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++++|..|+-.|++.++.+.+. ... -....+-..|++.|.+ +++.+|..++.+++.++... ......+.
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~-~~~---~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~ 93 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQ-IQA---VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGG-----NEQIQAVI 93 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHH-HHH---HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSC-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCch-HHH---HHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCC-----HHHHHHHH
Confidence 56788999999999887653111 111 1222455678888988 67999999999988887421 01111111
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
..-.=..|+.++. ++++.+|..++.++..++.........-.-...+|.+.+++.++++.+|+.|+.+++.++..-+..
T Consensus 94 ~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 94 DAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 1000112556777 688999999999998876422110000011247888999999999999999999999998754333
Q ss_pred hHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.... ...+++.+...+.++ +++|+..|+.
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 202 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSP-NEQILQEALW 202 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCS-SHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCC-CHHHHHHHHH
Confidence 2221 135667778888887 9999988763
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-07 Score=72.44 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|++....+.+. ... -....+-..|++.|.+ +++.+|..++.+++.++... ++..
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~-~~~---~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~---------~~~~ 79 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASA-IKA---IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP---------DEAI 79 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHH-HHH---HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHH-HHH---HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC---------hHHH
Confidence 45899999999999998654211 111 1122455678888988 77999999999998887431 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...++ ..++.++. ++++.++..++.++..++....+....-.-...++.+.+.+.++++.+|..|+.+++.++..
T Consensus 80 ~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11111 12556777 78899999999999888742221000001124688889999999999999999999999875
Q ss_pred hhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+...... ...+++.+...+.++ +++||..|+.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 192 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAAR 192 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHH
Confidence 43322111 235677788888887 9999988763
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.71 E-value=8.7e-07 Score=70.14 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.+.-.+ .....++..|.+ +++.+|..++..++.+.. .....+.++
T Consensus 35 ~~~~vr~~A~~~L~~~~~~---------------~~~~~L~~~l~d-~~~~vR~~A~~aL~~l~~------~~~~~~~l~ 92 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ---------------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKI------CKKCEDNVF 92 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH---------------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCC------CTTTHHHHH
T ss_pred CCHHHHHHHHHHHHccCCc---------------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhcc------ccccchHHH
Confidence 4677787777777665321 123345666676 677777777766665531 112234444
Q ss_pred HHHHHHHHH-HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh---
Q psy15255 89 QNNLKSQII-LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI--- 164 (199)
Q Consensus 89 ~~~ik~~ll-~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~--- 164 (199)
+. +. .++. ++++.+|..++.+++.+..... ...+.+++.+.+.++|+++.+|..|+.+++.+...
T Consensus 93 ~~-----L~~~~~~-d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~ 161 (280)
T 1oyz_A 93 NI-----LNNMALN-DKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATI 161 (280)
T ss_dssp HH-----HHHHHHH-CSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCH
T ss_pred HH-----HHHHHhc-CCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHH
Confidence 32 11 1223 6677777777777766553211 12345566666666666666666666666654321
Q ss_pred ------hhhh---hH--------H---HHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 165 ------FGNQ---ES--------T---YLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 165 ------~~~~---l~--------~---~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+. .. . ....+.+.+...+.|+ ++.||..|+
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~-~~~vR~~A~ 213 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK-NEEVRIEAI 213 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 0000 00 0 0123445566677776 788887775
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=71.81 Aligned_cols=174 Identities=15% Similarity=0.134 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.++...+.+.. ..+ .....-..++..|.+ +++.+|..++.+++.++... ++..
T Consensus 56 ~~~~v~~~a~~~L~~l~~~~~~~~-~~~---~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~---------~~~~ 121 (252)
T 4hxt_A 56 TDSEVQKEAARALANIASGPDEAI-KAI---VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP---------DEAI 121 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-HHH---HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHH-HHH---HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC---------HHHH
Confidence 458888888888888875421110 000 112345568888887 88999999999999887321 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...++ ..|+.++. ++++.++..++.++..++....+....-.-...++.+.+++.++++.+|..|+.+++.++..
T Consensus 122 ~~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 122 KAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 11111 12556777 78899999999999888753211000000134788999999999999999999999999874
Q ss_pred hhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-+...... ...+++.+...++++ +++||..|+.
T Consensus 201 ~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~ 234 (252)
T 4hxt_A 201 PTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQR 234 (252)
T ss_dssp BHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHH
Confidence 33322222 235677888888887 9999988863
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=71.78 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|.++...+.+.. ..+ .....-..+++.|.+ +++.+|..++.+++.++...-.. ...+
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~-~~i---~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-- 138 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQI-QAV---IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAG-- 138 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-HHH---HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHH-HHH---HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCC--
Confidence 358889999999998876431111 000 112345678888888 88999999999998886331000 0011
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
.++. |+.++. ++++.++..++.++..++....+....-.-...++.+.+.+.++++.+|+.|+.+++.++..
T Consensus 139 --~i~~-----L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 139 --ALPA-----LVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp --HHHH-----HHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred --CHHH-----HHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 1222 556777 78899999999999888752211000000034678889999999999999999999999854
Q ss_pred hhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-+....... ..+++.+...++++ +++||..|+.
T Consensus 211 ~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~ 244 (252)
T 4db8_A 211 GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQE 244 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHH
T ss_pred CHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHH
Confidence 333222222 34677888899997 8999988863
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.5e-07 Score=70.97 Aligned_cols=143 Identities=6% Similarity=-0.010 Sum_probs=111.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHHH-HHHhhcCcCC--CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAE-VARNLIDDAG--NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~-la~~~l~~~~--~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
+.+.+.+ ++..-|+.+...++. ++... +.-. ...+.++++. |.+.+..+.+..+|..|+++++.++..+.
T Consensus 21 f~~~l~s-~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~-----L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 21 FQERITS-SKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGI-----YGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHH-----HHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhc-CCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHH-----HHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 5666777 888899998888888 77542 1111 3456777776 44577448999999999999999998775
Q ss_pred -hhhcc-CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh-HHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 125 -DDAGN-NLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE-STYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 125 -~~~~~-~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l-~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+ ... .+...++|.++..+.|..+.||+++..++..+++..++.. .++.+.+++.+..+++++ ++.||.+++.|
T Consensus 94 ~~-~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~ 169 (249)
T 2qk1_A 94 TP-GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQL 169 (249)
T ss_dssp TT-TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred cc-cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence 3 234 6778899999999999999999999999999999875432 123677888888899998 99999998764
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=78.26 Aligned_cols=179 Identities=13% Similarity=0.048 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.+....+.+.. . .-....+-..++..|.+.++..+|..++.+++.+++..-+......-..++
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~-~---~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 194 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCR-D---YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHH-H---HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHH-H---HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 467888888888888765431000 0 000123455678888865789999999999999986531111111124455
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+. |+.++. ++++.++..++.++..++....+....-.-..+++.+.+++.++++.+|..|+.+++.++...+..
T Consensus 195 ~~-----L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 268 (450)
T 2jdq_A 195 NV-----LSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ 268 (450)
T ss_dssp HH-----HHHHTT-CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HH-----HHHHHc-cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHH
Confidence 55 455777 778899999999888876432110000001246788888889999999999999999998754433
Q ss_pred hHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..... ..+++.+...+.++ ++.||..|+.
T Consensus 269 ~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~ 298 (450)
T 2jdq_A 269 TQVILNCSALQSLLHLLSSP-KESIKKEACW 298 (450)
T ss_dssp HHHHHTTTHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHCccHHHHHHHHcCC-CHHHHHHHHH
Confidence 22222 24677788889997 9999988863
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=68.05 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=44.3
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.++. ++++.||..++.+++.+. -++.++.|.+.+.|+++.+|..|+.+++.+.. ....
T Consensus 114 ~~l~-d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~ 171 (201)
T 3ltj_A 114 KALK-DEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVR 171 (201)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHHT-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHH
Confidence 3444 556666666555554431 12345555666666666677776666666521 2234
Q ss_pred HHHHHhhCCCCCHHHhhhhhc
Q psy15255 178 QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+...++|+ ++.||..|.+
T Consensus 172 ~~L~~~l~d~-~~~vr~~A~~ 191 (201)
T 3ltj_A 172 AAMEKLAETG-TGFARKVAVN 191 (201)
T ss_dssp HHHHHHHHHC-CHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHH
Confidence 4455556676 7888877753
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-07 Score=67.91 Aligned_cols=110 Identities=11% Similarity=0.130 Sum_probs=65.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
|+..|.+ +++.||..++..++.+.. ++.++. |+.++. ++++.||..++.+++.+.
T Consensus 86 L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~~~-----L~~~l~-d~~~~vr~~a~~aL~~~~------- 140 (211)
T 3ltm_A 86 LIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEP-----LIKALK-DEDWFVRIAAAFALGEIG------- 140 (211)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHH-----HHHHTT-CSSHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHH-----HHHHHh-CCCHHHHHHHHHHHHHcC-------
Confidence 4444555 566666666666655521 112222 334555 677777777666665432
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-++.++.|.+.++|+++.+|..|+.+++.+.. +...+.+...++|+ ++.||..|.
T Consensus 141 ----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~ 195 (211)
T 3ltm_A 141 ----DERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAV 195 (211)
T ss_dssp ----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHH
Confidence 13455666667777777888888877777632 23444555566776 888888775
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=80.88 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.++.+-+.+....+ ++....+-+.+.+-|.+ +++.+|..+-.++|.+. ....++.+.
T Consensus 61 ~~~~~Krl~yl~l~~~~~~~---------~e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~-------~~~~~~~l~ 123 (591)
T 2vgl_B 61 DNLELKKLVYLYLMNYAKSQ---------PDMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIR-------VDKITEYLC 123 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHHS---------HHHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC-------SGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHcccC---------chHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC-------hHHHHHHHH
Confidence 56788888888777765432 22223344556666777 88888887766666553 245677777
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+. +..++. ++++.||..|+.++..+.... ...++ .+++.+.+++.|+++.||.+|+.+++.+++..+
T Consensus 124 ~~-----l~~~L~-d~~~~VRk~A~~al~~i~~~~-----p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 124 EP-----LRKCLK-DEDPYVRKTAAVCVAKLHDIN-----AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HH-----HHHHSS-CSCHHHHHHHHHHHHHHHHSS-----CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HH-----HHHHcC-CCChHHHHHHHHHHHHHHhhC-----hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 65 556777 889999999999998887632 23454 588999999999999999999999999876432
Q ss_pred hh---------hH-----------------------------HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 167 NQ---------ES-----------------------------TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 167 ~~---------l~-----------------------------~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+. +. +....+++.+..++++. ++.|+.+|++
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~-~~~V~~ea~~ 261 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHA-NSAVVLSAVK 261 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSS-TTHHHHHHHH
T ss_pred CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCC-ChHHHHHHHH
Confidence 11 10 11234556666778886 8889988875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=66.52 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|.-.|.+.-.. .....|++.|.+ +++.||..++..++.+.. ++.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~---------------~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~ 83 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE---------------RAVEPLIKALKD-EDAWVRRAAADALGQIGD-----------ERAV 83 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG---------------GGHHHHHHHTTC-SCHHHHHHHHHHHHHHCC-----------GGGH
T ss_pred CCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHcC-CCHHHHHHHHHHHHhhCC-----------HHHH
Confidence 4566777766666654321 122346778887 789999998888887741 2223
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
+. |+.++. ++++.+|..++..++.+. -++.++.+.+++.|+++.+|..|+.+++.+...
T Consensus 84 ~~-----L~~~l~-~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 142 (211)
T 3ltm_A 84 EP-----LIKALK-DEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 142 (211)
T ss_dssp HH-----HHHHTT-CSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred HH-----HHHHHc-CCCHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----
Confidence 32 344666 889999999888876542 134567778888999999999999999987431
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+.+...++|+ ++.||..|++
T Consensus 143 ------~~~~~L~~~l~d~-~~~vr~~a~~ 165 (211)
T 3ltm_A 143 ------RAVEPLIKALKDE-DGWVRQSAAD 165 (211)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHH
Confidence 1334556677887 9999988863
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.7e-07 Score=71.62 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhhcch-hhHhhhhccCHhhHHHHHHHHHH-HHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 10 SVEERQMSAVLLRKIFST-DFIEIYSKLAVNDQNNLKSQIIL-LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~-~~~~~~~~l~~~~~~~ik~~ll~-~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
+.+.|..|.-.|.+++.. ++...+.+. ..-..++. .|.+ +++.||..++.++|.++.+. |+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~------G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n---------~~~ 116 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQL------SGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNV---------AAI 116 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHT------THHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTC---------HHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHc------CCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCC---------HHH
Confidence 345677777777777754 322212111 12235677 7877 89999999999999998542 111
Q ss_pred HHHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 88 LQNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 88 l~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
-...++ ..|+.++..+++..+|..|+.+++.++....+. ...+ ...+|.|..++++++..+|..|+.+++++
T Consensus 117 ~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L 194 (296)
T 1xqr_A 117 QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG--LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 194 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHH--HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 111111 126667775568899999999999887533220 0011 13677888888899999999999999999
Q ss_pred hHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+..-++...... ..+++.+...+.++ |++|+..|+
T Consensus 195 ~~~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al 230 (296)
T 1xqr_A 195 LVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVL 230 (296)
T ss_dssp HHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHH
T ss_pred HhCChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHH
Confidence 876333322222 35666777788887 888987765
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-07 Score=69.50 Aligned_cols=149 Identities=15% Similarity=0.085 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
......|...|.+ +++.+|..++.+++.++... ......+...-.=..|+.++. ++++.+|..++.++..++.
T Consensus 11 ~~~~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 11 GSELPQMVQQLNS-PDQQELQSALRKLSQIASGG-----NEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIAS 83 (210)
T ss_dssp --CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHhcC-CCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhc
Confidence 3444567788887 88999999999999987432 011111110000112556777 7789999999999988763
Q ss_pred HhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...+....-.....+|.+.++++++++.+|+.|+.+++.++...++..... ...+++.+...+.++ +++|+..|+.
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~ 160 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALW 160 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHH
Confidence 221100000112367888889999999999999999999986543332222 235677788888987 9999988863
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.2e-06 Score=66.84 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=43.6
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.++. ++++.||..++..++.+. ..-+..++.+.+.+.|+++.+|..|+.+++.+.. ...+
T Consensus 166 ~~l~-d~~~~vr~~a~~aL~~~~---------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~ 225 (280)
T 1oyz_A 166 NLLK-DPNGDVRNWAAFAININK---------YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVL 225 (280)
T ss_dssp HHHT-CSSHHHHHHHHHHHHHHT---------CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGH
T ss_pred HHHc-CCCHHHHHHHHHHHHhhc---------cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----------HhhH
Confidence 3444 555555555555544321 1234566677777777777777777777776541 1233
Q ss_pred HHHHHhhCCCCCHHHhhhhh
Q psy15255 178 QMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+...++|+ + ||..|.
T Consensus 226 ~~L~~~l~d~-~--vr~~a~ 242 (280)
T 1oyz_A 226 SVLCDELKKN-T--VYDDII 242 (280)
T ss_dssp HHHHHHHTSS-S--CCHHHH
T ss_pred HHHHHHhcCc-c--HHHHHH
Confidence 4455566775 4 776654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=81.78 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=102.2
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhcc--------cHHHHHHHHHHH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTCD--------NDNIRRKICDAA 116 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~~--------~~~vr~~a~~~i 116 (199)
+...|.++.+..+|.. ++.++++.+. ..|..+ -+..+|+.++..+...+ ++.+|++.+.++
T Consensus 53 l~~iL~~s~~~~vr~~----aa~~Lk~~i~----~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~i 124 (1049)
T 3m1i_C 53 ADQILQFSTNPQSKFI----ALSILDKLIT----RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTL 124 (1049)
T ss_dssp HHHHHHHCSCHHHHHH----HHHHHHHHHH----HTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHH----HHHHHHHHHH----hhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHH
Confidence 4555555567788885 5555555554 356554 56788999999887433 478999999999
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----------------hhHHHHHHHHHHH
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----------------QESTYLVVIKQML 180 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----------------~l~~~~~~l~~~l 180 (199)
+.|+....+ ..||++++.++++++ +++..++.++.++..++|.+.+ .+..+.+.|...+
T Consensus 125 a~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~ 199 (1049)
T 3m1i_C 125 VQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLC 199 (1049)
T ss_dssp HHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999987654 589999999999996 6677899999999999987652 2445567777778
Q ss_pred HHhhCCCCCHHHhhhhhc
Q psy15255 181 QQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 181 ~~~l~d~~~~~Vr~~A~~ 198 (199)
..+++++.+++++..|++
T Consensus 200 ~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 200 FQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 888876546778876653
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-06 Score=78.43 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=87.7
Q ss_pred HHHHHHhcC-CchhHHHHHHHHHHHHHHhhcCcCCC-----CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Q psy15255 47 QIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAGN-----NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVA 120 (199)
Q Consensus 47 ~ll~~L~~e-~~~~vR~~~~~~ia~la~~~l~~~~~-----~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~ 120 (199)
.|++.+.++ .+..+|. .++.++|+.+...+. ...|+=.+..||+.++..+.. +.+.+|++++.+++.|+
T Consensus 39 ~L~~il~~~~~~~~vR~----~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~-~~~~ir~~l~~~ia~ia 113 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRL----AGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS-LPNNLQVQIGEAISSIA 113 (960)
T ss_dssp HHHHHHHCTTSCHHHHH----HHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHH----HHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence 577777663 3456666 678888888754332 234555778899999999984 45899999999999999
Q ss_pred HHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 121 RNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 121 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
....+ +.||++++.++++++++++..+++++.++..+++...
T Consensus 114 ~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 114 DSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 87653 5899999999999998888899999999999998543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.6e-07 Score=68.26 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=68.8
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+ +++.||..++..++.+.. ++.++. |+.++. ++++.+|..++..++.+.
T Consensus 49 ~L~~~l~~-~~~~vr~~a~~~L~~~~~-----------~~~~~~-----L~~~l~-d~~~~vr~~a~~aL~~~~------ 104 (201)
T 3ltj_A 49 PLIKALKD-EDAWVRRAAADALGQIGD-----------ERAVEP-----LIKALK-DEDGWVRQSAAVALGQIG------ 104 (201)
T ss_dssp HHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHH-----HHHHTT-CSSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHhhCC-----------HHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhC------
Confidence 34555555 566666666665555421 112222 334565 677778777777665432
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
-++.++.+.+++.|+++.+|..|+.+++.+.. ....+.+...+.|+ ++.||..|++
T Consensus 105 -----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~ 160 (201)
T 3ltj_A 105 -----DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAAD 160 (201)
T ss_dssp -----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-SHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 13456666777788888888888888887642 12334556677887 8999988763
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=75.65 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChH---
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP--- 85 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wp--- 85 (199)
.++.+|..|+-.|.++...+.+.. ..+ ....+-..|+..|.+ +++.+|..++.+++.+++..-+ ...+.
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~-~~~---~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~---~~~~~~~~ 256 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYR-DYV---LQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKP---QPDWSVVS 256 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHH-HHH---HHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSS---CCCHHHHG
T ss_pred CCHHHHHHHHHHHHHHhCCCccch-HHH---HHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCC---CCcHHHHH
Confidence 467788888888888764321000 000 111344567888887 8899999999999988854311 11111
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
.+++. |+.++. ++++.++..++.++..++....+....-....+++.+.+++.++++.+|..|+.+++.++...
T Consensus 257 ~~l~~-----L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 257 QALPT-----LAKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGHHH-----HHHHTT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHH-----HHHHHc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 22443 555776 778899999999998887432110000011246788888899999999999999999998654
Q ss_pred hhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 166 GNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 166 ~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....... ..+++.+...+.++ ++.||.+|+.
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~ 363 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSP-KENIKKEACW 363 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHH
Confidence 33222222 35677888899997 9999988873
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.43 E-value=8.2e-07 Score=76.66 Aligned_cols=174 Identities=17% Similarity=0.067 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|.+....+.+.. . .-....+-..|++.|.+ +++.+|..++.+++.++...-.. ...+.
T Consensus 143 ~~~~v~~~A~~~L~~l~~~~~~~~-~---~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~- 216 (530)
T 1wa5_B 143 QPEMLQLEAAWALTNIASGTSAQT-K---VVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA- 216 (530)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-H---HHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHH-H---HHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCc-
Confidence 367888888888888876431100 0 00012335678888888 89999999999999998431000 00111
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
++. |+.++. ++++.++..++.++..++....+.........++|.|.+++.++++.+|..|+.+++.++..
T Consensus 217 ---l~~-----L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 217 ---MEP-----ILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp ---HHH-----HHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred ---HHH-----HHHHhc-cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 222 555676 68889999999998887743211000012246788999999999999999999999999865
Q ss_pred hhhhhHHHHH-HHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTYLV-VIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~~~-~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.++......+ .+++.+...+.++ +++||..|+.
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~ 321 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR 321 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHH
Confidence 4433333332 5677788888887 8999988763
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-06 Score=74.26 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++..|..|+..|++.++.+.. +....-....+-..|++.|.+.+++.+|..++.+++.++... ++..
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~---~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~---------~~~~ 153 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERS---PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT---------SENT 153 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSS---CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCC---chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC---------HHHH
Confidence 5688899999999998764310 001111223455678888988555999999999999998531 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHh-cCCCHHHHHHHHHHHHhh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCA-NSDNTTLKESALRLFTSV 161 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~-~~~~~~vr~~a~~~l~~i 161 (199)
..+++ ..|+.++. ++++.+|..++.++..|+....+. .... ...++.|++++ .++++.++..|+.+++.+
T Consensus 154 ~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~--~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKC--RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHH--HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhh--HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11111 12666777 688999999999999887532210 0000 13567778888 577999999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 162 ~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+...+..-......+++.+...+.++ +++|+..|+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~ 266 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACW 266 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 87643322233456677778888887 9999988763
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-06 Score=73.72 Aligned_cols=173 Identities=16% Similarity=0.085 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC----CCCChH
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA----GNNLWP 85 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~----~~~~Wp 85 (199)
++.+|..|+-.|.+....+.+.. . .-.....-..|+..|.+ +++.||..++.+++.|+...-... ..+.
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~-~---~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~-- 203 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENT-K---VVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGA-- 203 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHH-H---HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHhCCCHHHH-H---HHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCc--
Confidence 47888888888888876421110 0 00111345568888888 899999999999999974310000 0111
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
++. |+.++..++++.++..++.++..++..... ........++|.|.+++.++++.++..|+.+++.++...
T Consensus 204 --l~~-----Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 204 --LLP-----LLAQLNEHTKLSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp --HHH-----HHHTCCTTCCHHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred --HHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 222 555664367889999999999887753211 001123568999999999999999999999999998654
Q ss_pred hhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 166 GNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 166 ~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+....... ..+++.+...+.++ ++.|+..|+.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~ 308 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALR 308 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHH
Confidence 43322222 25677888889997 8999988763
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-05 Score=71.53 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=99.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC--DNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~--~~~~vr~~a~~~i~~i~~~ 122 (199)
++..|....+..||.. ++.++++.+. ..|..+ -...+|+.++..+... ..+.+|++.+.+++.|+..
T Consensus 62 ~~~lL~~~~~~~vr~~----aa~~L~~~i~----~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~ 133 (963)
T 2x19_B 62 SWQLLQPDKVPEIQYF----GASALHIKIS----RYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALS 133 (963)
T ss_dssp HHHHTSTTSCHHHHHH----HHHHHHHHHH----HCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCchHHHHH----HHHHHHHHHH----hCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4445555567788875 4555555553 356655 5677888899988732 3588999999999999987
Q ss_pred hHhhhccCChHHHHHHHHHHhcC-----CCHHHHHHHHHHHHhhhHhhh-------------hhhHHHHHHHHHHHHHhh
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANS-----DNTTLKESALRLFTSVPEIFG-------------NQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~-----~~~~vr~~a~~~l~~i~e~~~-------------~~l~~~~~~l~~~l~~~l 184 (199)
..+ ..||++++.+.+++++ +++..++.++.++..++|.+. +.+..+.+.+.+++..++
T Consensus 134 ~~p----~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l 209 (963)
T 2x19_B 134 MMP----DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLL 209 (963)
T ss_dssp HTT----TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHH
T ss_pred hCc----cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 4699999999999976 367789999999999997541 123456778888888888
Q ss_pred CCCCCH-HHhhhhh
Q psy15255 185 LPPNPY-SVQALQL 197 (199)
Q Consensus 185 ~d~~~~-~Vr~~A~ 197 (199)
+++.++ .++..++
T Consensus 210 ~~~~~~~~~~~~~l 223 (963)
T 2x19_B 210 QQPSSPSCVRQKVL 223 (963)
T ss_dssp SCTTCCHHHHHHHH
T ss_pred hCCCCchHHHHHHH
Confidence 875332 3555444
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-06 Score=75.93 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=91.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHH
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC--DNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~--~~~~vr~~a~~~i~~i~~~ 122 (199)
++..|....+..||..++ .++++.+. ..|..+ -...+|+.++..+... ..+.+|++.+.+++.|+..
T Consensus 44 ~~~lL~~~~~~~vr~~aa----~~L~~~i~----~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~ 115 (971)
T 2x1g_F 44 SWQLMQLGKSQEVQFFGA----ITLHSKLM----KHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVH 115 (971)
T ss_dssp HHHHTCTTSCHHHHHHHH----HHHHHHHH----HCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHH----HHHHHHHH----ccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 456666557888888544 44555443 346655 5678899999988743 2688999999999999986
Q ss_pred hHhhhccCChHHHHHHHHHHhcCC------CHHHHHHHHHHHHhhhHhhh------------hhhHHHHHHHHHHHHHhh
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSD------NTTLKESALRLFTSVPEIFG------------NQESTYLVVIKQMLQQCL 184 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~------~~~vr~~a~~~l~~i~e~~~------------~~l~~~~~~l~~~l~~~l 184 (199)
.. . .||++++.+++.++++ ++..++.++.++..++|.+. +.+..+.+.+.+++..++
T Consensus 116 ~~----p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l 190 (971)
T 2x1g_F 116 ML----G-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYL 190 (971)
T ss_dssp TT----C-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cc----c-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 2 8999999999999865 67789999999999997532 223445667777777776
Q ss_pred CCCCCH-------HHhhhhh
Q psy15255 185 LPPNPY-------SVQALQL 197 (199)
Q Consensus 185 ~d~~~~-------~Vr~~A~ 197 (199)
++.+++ +++..|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 191 KLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHTTSCCCHHHHHHHHHHH
T ss_pred hcccCCCCCccchhHHHHHH
Confidence 542122 5666654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.17 E-value=8.9e-06 Score=71.46 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=92.6
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
+++++.+ ++..+|+...-.+..+++. -||+... +-+.+.+-++ ++++.+|..|+.+++.+..
T Consensus 54 vi~l~~s-~~~~~Krl~yl~l~~~~~~---------~~e~~~l-~~n~l~kdL~-~~n~~ir~~AL~~L~~i~~------ 115 (591)
T 2vgl_B 54 VVNCMQT-DNLELKKLVYLYLMNYAKS---------QPDMAIM-AVNSFVKDCE-DPNPLIRALAVRTMGCIRV------ 115 (591)
T ss_dssp HHHTTSS-SCHHHHHHHHHHHHHHHHH---------SHHHHHT-THHHHGGGSS-SSSHHHHHHHHHHHHTCCS------
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHHccc---------CchHHHH-HHHHHHHHcC-CCCHHHHHHHHHHHHcCCh------
Confidence 4455555 7788887666666666543 2454321 1133444555 7899999998887776531
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...++.+++.+.+++.|+++.||..|+.++..+....++.+.. +.+.+.+..++.|+ |+.|+..|+
T Consensus 116 -~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~-d~~V~~~A~ 181 (591)
T 2vgl_B 116 -DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADS-NPMVVANAV 181 (591)
T ss_dssp -GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCS-CHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCC-ChhHHHHHH
Confidence 2467889999999999999999999999999999855443332 46778888899997 999998885
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-07 Score=67.08 Aligned_cols=111 Identities=10% Similarity=0.102 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+...|.+ +++.+|..++...+.+. ....|. |+.++. ++++.+|..++..++.+.
T Consensus 15 ~~l~~~L~~-~~~~vR~~A~~~L~~~~--------~~~~~~---------L~~~L~-d~~~~vR~~A~~aL~~~~----- 70 (131)
T 1te4_A 15 VPRGSHMAD-ENKWVRRDVSTALSRMG--------DEAFEP---------LLESLS-NEDWRIRGAAAWIIGNFQ----- 70 (131)
T ss_dssp ------CCS-SCCCSSSSCCSSTTSCS--------STTHHH---------HHHGGG-CSCHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhC--------chHHHH---------HHHHHc-CCCHHHHHHHHHHHHhcC-----
Confidence 346677777 77778876554444321 111122 445666 788899988777765432
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-+..++.|..++.|+++.||..|+.+++.+.. ....+.+...++|+ |+.||..|+
T Consensus 71 ------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~A~ 125 (131)
T 1te4_A 71 ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKVAV 125 (131)
T ss_dssp ------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHH
Confidence 14557777777888999999999999988652 12344555667786 888998775
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.6e-05 Score=60.95 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~W 84 (199)
.++.+|..|+-.|.+....+......-+ ....-..|++.|.++++..+|++++.+++.+++..-+. ...+.+
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv----~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVL----GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHH----HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHH----HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 5789999999999998765421111111 11234568888887678899999999999998643110 001223
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
|- |+.++. ++++.++..++-++..++....+. .... ...++.|+.++.++++.+|+.|+.+++.++
T Consensus 170 ~~---------L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~--~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 170 SV---------LMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEH--KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HH---------HHHHHH-SSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HH---------HHHHHc-CCCHHHHHHHHHHHHHHHhCChHH--HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 32 445677 789999999999999988653220 1111 237788899999999999999999999998
Q ss_pred Hhh
Q psy15255 163 EIF 165 (199)
Q Consensus 163 e~~ 165 (199)
...
T Consensus 238 ~~~ 240 (296)
T 1xqr_A 238 TDF 240 (296)
T ss_dssp TTC
T ss_pred hCC
Confidence 763
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00014 Score=57.66 Aligned_cols=142 Identities=8% Similarity=0.042 Sum_probs=97.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChH-HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWP-EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wp-eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
+-..+.| .+..|..+.++++..++...-...+..... ......+...+-+++. ++.+.+|..+.+++..++..
T Consensus 60 lkk~l~D-sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~---- 133 (278)
T 4ffb_C 60 FAQYITD-SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGL---- 133 (278)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHT----
T ss_pred HHHHhcc-chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHh----
Confidence 3445666 888999999999988887653321111110 1111111111113444 67788888888888776642
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhh---HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQE---STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l---~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...-..+++.+...+++.+|.+|..++..+..+++.++... .+.+..+...+..++.|+ |++||.+|.+
T Consensus 134 --~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~-~~~VR~aA~~ 205 (278)
T 4ffb_C 134 --DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG-DRNVRSQTMN 205 (278)
T ss_dssp --SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS-SHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC-cHHHHHHHHH
Confidence 22445678888889999999999999999999998877552 455667777888899998 9999999874
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=7e-05 Score=66.18 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.+..+-+.+.+.. .++.--.+-+.+.+-|.+ +++.+|..+..++|.+.... .-+.+.
T Consensus 82 ~~~~~Krl~Yl~~~~~~~~---------~~e~~~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~~~-------~~~~l~ 144 (618)
T 1w63_A 82 QKFTDKRIGYLGAMLLLDE---------RQDVHLLMTNCIKNDLNH-STQFVQGLALCTLGCMGSSE-------MCRDLA 144 (618)
T ss_dssp SSHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCCHH-------HHHHHH
T ss_pred CchHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCCHH-------HHHHHH
Confidence 3444555555544444432 244445667778888888 99999999999999885221 123334
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
+. +..++. ++++.||++|+.++..+....++ ..+.+++.+.+++.|+|+.|+.+|+.+++.+++.-
T Consensus 145 ~~-----l~~~L~-~~~~~VRk~A~~al~~l~~~~p~-----~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 145 GE-----VEKLLK-TSNSYLRKKAALCAVHVIRKVPE-----LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HH-----HHHHHH-SCCHHHHHHHHHHHHHHHHHCGG-----GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HH-----HHHHHc-CCCHHHHHHHHHHHHHHHHHChH-----HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 43 566777 89999999999999999875543 23456777888899999999999999999998654
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00013 Score=63.10 Aligned_cols=172 Identities=14% Similarity=0.077 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.++.-|+-.|.++...+.+..-.- ....+-..|.+.|.+ ++..++..++.+++.++... ++..
T Consensus 263 ~~~~v~~~a~~aL~~l~~~~~~~~~~v----~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~---------~~~~ 328 (529)
T 3tpo_A 263 NDPEVLADSCWAISYLTDGPNERIEMV----VKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGT---------DEQT 328 (529)
T ss_dssp SCHHHHHHHHHHHHHHHSSCHHHHHHH----HTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHH----HhccchHHHHHHhcC-CChhHHHHHHHHHHHHHccc---------hHHH
Confidence 455566666666666554321110000 112234567788888 88999999888888886321 1111
Q ss_pred HHHHHH----HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKS----QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~----~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
...+.. .|+.++. ++++.+|..++.+++.|+....+.. ..-. ..++|.+..++.+++..+|..|+.+++.++.
T Consensus 329 ~~i~~~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 329 QKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccHHHH-HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 111111 1455666 7889999999999988875322100 0011 2478889999999999999999999999987
Q ss_pred hhhhhhHHH-H-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 164 IFGNQESTY-L-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~~~l~~~-~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-..+...+ . ..+++.|...+.++ |++++..++
T Consensus 407 ~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L 441 (529)
T 3tpo_A 407 GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVIL 441 (529)
T ss_dssp HSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHH
T ss_pred CCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHH
Confidence 543332111 1 24566677788887 888886654
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00025 Score=62.79 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.++.+-+......+ ++.--.+-+.+.+-|.+ +++.+|.-+-.++|.+... ..-+.+.
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~---------~e~~~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~~-------e~~~~l~ 148 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSN---------SELIRLINNAIKNDLAS-RNPTFMGLALHCIANVGSR-------EMAEAFA 148 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCC---------HHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCCH-------HHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhhccCCH-------HHHHHHH
Confidence 45566666666665555433 33334556677778888 9999999888888877421 1223333
Q ss_pred HHHHHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 89 QNNLKSQIILLL--QTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 89 ~~~ik~~ll~~l--~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+. +.+++ . +.++.||++|+-++..+....++ .... +.+++.+.+++.|+|+.|+.+|+.++..++..-+
T Consensus 149 ~~-----v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~--~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 149 GE-----IPKILVAG-DTMDSVKQSAALCLLRLYRTSPD--LVPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp TH-----HHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGG--GCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HH-----HHHHHhCC-CCCHHHHHHHHHHHHHHHHhChh--hcCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 33 55677 5 88999999999999999985543 1231 2456677778899999999999999999987655
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy15255 167 NQESTYLVVIKQMLQQC 183 (199)
Q Consensus 167 ~~l~~~~~~l~~~l~~~ 183 (199)
+.+.++.+.+..++...
T Consensus 220 ~~~~~~~~~~~~~L~~l 236 (621)
T 2vgl_A 220 EEFKTSVSLAVSRLSRI 236 (621)
T ss_dssp HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555555444
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=69.51 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=76.2
Q ss_pred CCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhHh
Q psy15255 55 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC------DNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 55 e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~------~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+..||.. ++.++++.+. ..|..+ -...||+.++..+... +.+.+|++.+.+++.|+....+
T Consensus 58 s~~~~vR~~----A~~~Lk~~I~----~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 58 TQVAIVRHF----GLQILEHVVK----FRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp TSCHHHHHH----HHHHHHHHHH----HSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHH----HHHHHHHHHH----HhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc
Confidence 356677774 5556666553 346554 6678899999998743 4688999999999999987643
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
..||++++.+++.+++ ++..++.++.+|..++|.+
T Consensus 130 ----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 130 ----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp ----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH
T ss_pred ----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 5899999999999976 6677999999999999863
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.90 E-value=8.2e-05 Score=64.33 Aligned_cols=144 Identities=11% Similarity=0.122 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc----CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD----AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~----~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
..+-..|...|.+ +++.++..+|.+++.++...-.. ...+.-|- |+.++. +++..++..++.++.
T Consensus 250 ~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~---------Lv~lL~-~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 250 EQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ---------LVKLLG-ATELPIVTPALRAIG 318 (529)
T ss_dssp HHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHH---------HHHHHT-CSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHH---------HHHHhc-CCChhHHHHHHHHHH
Confidence 3444567777777 88899999998888887431000 00122222 555777 788899999999988
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.|+.........-.-...++.|.+++.++++.+|+.|+.+++.++..-........ ..+++.+...+.++ +.+||.+|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHH
Confidence 87642211000000123566777888999999999999999999865443322222 35666777788887 99999887
Q ss_pred h
Q psy15255 197 L 197 (199)
Q Consensus 197 ~ 197 (199)
+
T Consensus 398 ~ 398 (529)
T 3tpo_A 398 A 398 (529)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.4e-05 Score=67.43 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..+++.|.+ ++..+|+.++..+..+.+..+. .+.||.|++ ++. ++++.+|..|+.++..|+.....
T Consensus 118 ~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~---~g~ip~Lv~---------lL~-~~d~~vr~~A~~~L~~L~~~~~~ 183 (780)
T 2z6g_A 118 PTNVQRLAE-PSQMLKHAVVNLINYQDDAELA---TRAIPELTK---------LLN-DEDQVVVNKAAVMVHQLSKKEAS 183 (780)
T ss_dssp --------C-CSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---------HHH-CSCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHH---hCCHHHHHH---------HHC-CCCHHHHHHHHHHHHHHhCCChh
Confidence 467888888 7888898888877755444333 345666554 555 78899999999999988753321
Q ss_pred hhccCChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 126 DAGNNLWPEFLQFLFQCANS-DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
......-+..++.|.+.+.+ +++.+|+.|+.+|..+...-.....-.....++.+...++++ +++|+..|+.
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~ 256 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP-VDSVLFHAIT 256 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 11112235788888888874 499999999999999765422111111135677788899997 8999988763
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=68.13 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.++.....+.. . .-....+-..|.+.|.+ ++..++..++.+++.++... ++..
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~-~---~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~---------~~~~ 309 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERI-E---MVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGT---------DEQT 309 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHH-H---HHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHhhchhhhH-H---HHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCC---------HHHH
Confidence 456677777777776654331110 0 00112234567888888 88899999998888876321 1111
Q ss_pred HHHHHH----HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKS----QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~----~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
..++.. .|+.++. ++++.+|..++.++..|+....+.. ..-+ ..++|.+..++.+++..+|..|+.+++.++.
T Consensus 310 ~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 310 QKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI-QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 111111 1333455 7888999999999988864322100 0011 2478899999999999999999999999987
Q ss_pred hhhhhhHHH-H-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 164 IFGNQESTY-L-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 164 ~~~~~l~~~-~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.-..+...+ . ..+++.|...+.++ |++++..++
T Consensus 388 ~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L 422 (510)
T 3ul1_B 388 GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVIL 422 (510)
T ss_dssp HCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHH
Confidence 543332111 1 24566677788887 888887664
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00034 Score=60.25 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHH-----HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQN-----NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
.++.++.-|+-.|.|..+.+ ++.+. ..-..|++.|.+ ++..||..++.+++.|+...
T Consensus 113 ~~~~lq~~Aa~aL~nias~~---------~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~-------- 174 (510)
T 3ul1_B 113 DCSPIQFESAWALTNIASGT---------SEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDG-------- 174 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTSC---------HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTC--------
T ss_pred CCHHHHHHHHHHHHHHhcCC---------HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCC--------
Confidence 45666666777777765433 22222 233468888888 89999999999999987431
Q ss_pred hHHHHHHHHH----HHHHHHHhhcc----cHHHHHHHHHHHHHHHHHhHhhhccCCh---HHHHHHHHHHhcCCCHHHHH
Q psy15255 84 WPEFLQNNLK----SQIILLLQTCD----NDNIRRKICDAAAEVARNLIDDAGNNLW---PEFLQFLFQCANSDNTTLKE 152 (199)
Q Consensus 84 WpeLl~~~ik----~~ll~~l~~~~----~~~vr~~a~~~i~~i~~~~~~~~~~~~~---~~ll~~l~~~~~~~~~~vr~ 152 (199)
|+.-...++ ..|+.++.... ...+...++.++..++..-. ....+ ..++|.|.+++.++++.++.
T Consensus 175 -~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~---~~~~~~~~~~~lp~L~~LL~~~~~~v~~ 250 (510)
T 3ul1_B 175 -SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN---PAPPLDAVEQILPTLVRLLHHNDPEVLA 250 (510)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS---SCCCHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred -HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc---chhHHHHHHhHHHHHHHHHhcCCHHHHH
Confidence 111111111 12445665221 22344444455544433111 11222 56899999999999999999
Q ss_pred HHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 153 SALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 153 ~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.|+.+++.++..-.+..... ...+++.+..++.++ ++.|+..|++
T Consensus 251 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~ 296 (510)
T 3ul1_B 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 296 (510)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHH
Confidence 99999999986543322111 134566777888887 8889877753
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00057 Score=61.98 Aligned_cols=147 Identities=9% Similarity=0.019 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
...-..|...|.+ +++.||..++.+++.|+...-.......=++.++. |+..+..++++.+|..|+.++..++.
T Consensus 149 ~g~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~-----Lv~~L~~~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 149 TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH-----HHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 3445567777777 78999999999999998543100000001334444 55677645688999999999888654
Q ss_pred HhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.. +....-.-...++.|.++++++++.+|..|+.+|..++...+....... ..+++.+...+.++ +.+|+..|
T Consensus 223 ~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a 296 (780)
T 2z6g_A 223 HR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 296 (780)
T ss_dssp SH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHH
T ss_pred Cc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHH
Confidence 21 1000000124788999999999999999999999999976543322222 35667777888886 87777654
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=50.78 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..|++.|.+ +++.||..++..++.+.. ++.++. |+.++. ++++.||..++..++.+.
T Consensus 45 ~~L~~~L~d-~~~~vR~~A~~aL~~~~~-----------~~a~~~-----L~~~L~-d~~~~VR~~A~~aL~~~~----- 101 (131)
T 1te4_A 45 EPLLESLSN-EDWRIRGAAAWIIGNFQD-----------ERAVEP-----LIKLLE-DDSGFVRSGAARSLEQIG----- 101 (131)
T ss_dssp HHHHHGGGC-SCHHHHHHHHHHHGGGCS-----------HHHHHH-----HHHHHH-HCCTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHhcCC-----------HHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhC-----
Confidence 668888888 899999998888776531 333443 445666 889999999888877543
Q ss_pred hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 126 DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 126 ~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
-++.++.|.+.++|+++.+|..|..+++.|
T Consensus 102 ------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 102 ------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 145678888888999999999999998764
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0013 Score=52.03 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=89.3
Q ss_pred CchhHHHHHHHHHHHHHHhhcCcCCCCCh---HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh
Q psy15255 56 DNDNIRRKICDAAAEVARNLIDDAGNNLW---PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 132 (199)
Q Consensus 56 ~~~~vR~~~~~~ia~la~~~l~~~~~~~W---peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~ 132 (199)
+++.|-.+.-+++..++..+-+.+..-.= .-++|. |+.=++ ++.+.+|..+-+++..+... .+ -
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~-----LveKlG-d~k~~vR~~~r~il~~l~~v-~~------~ 165 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPY-----LLLKTG-EAKDNMRTSVRDIVNVLSDV-VG------P 165 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH-----HHHGGG-CSSHHHHHHHHHHHHHHHHH-HC------H
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH-----HHHHhC-CChHHHHHHHHHHHHHHHHH-CC------H
Confidence 67888888888888887766543222221 234665 445556 77888999887777655542 22 2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH---HHHHHhhCCCCCHHHhhhhhc
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK---QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~---~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..+++.+..++.+.++++|+..+..++.+.+..+-. + ...+ +.+..++.|+ |.+||-+|+.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~-d~~VR~aAl~ 229 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDK-DVNVRNAAIN 229 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCC-CHHHHHHHHH
Confidence 347888888999999999999999999999887754 2 1123 6677899998 9999999863
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0038 Score=57.87 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=80.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhhHhhhhhhHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESALRLFTSVPEIFGNQESTYLV 174 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a~~~l~~i~e~~~~~l~~~~~ 174 (199)
++..+. +....||..|-..+..++..+.+ .....++|.++..+.+. .|+.+.+|+.++..+++..++++...++
T Consensus 100 ~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~ 174 (986)
T 2iw3_A 100 ICTNAG-NKDKEIQSVASETLISIVNAVNP----VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP 174 (986)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHhc-CCchHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 444555 67788999988888888876654 24588999999999765 7999999999999999988888888899
Q ss_pred HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 175 VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 175 ~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|++++..+|-|- -++|..+|.
T Consensus 175 ~~~p~~~~~~~d~-k~~v~~~~~ 196 (986)
T 2iw3_A 175 ELIPVLSETMWDT-KKEVKAAAT 196 (986)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHH
T ss_pred chhcchHhhcccC-cHHHHHHHH
Confidence 9999999999997 899998875
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0065 Score=45.65 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.-++|-++.++.|.|.-||.+|+.+++.+++.-+
T Consensus 180 ~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 180 NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 3456666666666666667777776666666543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0014 Score=55.69 Aligned_cols=142 Identities=8% Similarity=0.046 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+..|.++...+... ..+ -.. ...-..+++.|.+.+++.+|..++.++..+.+.. .....+.
T Consensus 29 ~~~~v~~~A~~~L~~l~~~~~~~--~~~-~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~------~~~~~i~ 98 (529)
T 1jdh_A 29 EDQVVVNKAAVMVHQLSKKEASR--HAI-MRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR------EGLLAIF 98 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHH--HHH-HTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccH--HHH-HhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc------hhHHHHH
Confidence 67899999999999987543110 000 001 1344567788877568899998888888765321 0111111
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC--hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL--WPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~--~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
..-.=..|+.++. ++++.++..++.++..++....+. ... -...+|.+.+.+.++++.+|..++.++..++.
T Consensus 99 ~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 99 KSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGA--KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTH--HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcch--HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0000012566777 778999999999999887642210 011 14578899999999999999999999988875
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00071 Score=59.75 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-..|...|.+ +++.+|..++.+++.++...-.......=+..++. |+..+...+++.++..++.++..++...
T Consensus 16 i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~-----Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~- 88 (644)
T 2z6h_A 16 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTAGTLHNLSHHR- 88 (644)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHH-----HHHHHHSCCCHHHHHHHHHHHHHHTTSH-
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHH-----HHHHHhcCCCHHHHHHHHHHHHHHhcCh-
Confidence 4457778887 88999999999999998543100000001223333 5567764458889998888887665321
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+....-.-...++.|.++++++++.+|..|+.++..++...+...... ....++.+...++++ +++++..|+
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~ 161 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITT 161 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHH
Confidence 100000002478888999999999999999999999987643322222 245677788888887 888877653
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0007 Score=59.89 Aligned_cols=92 Identities=12% Similarity=-0.029 Sum_probs=72.1
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHh--cCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 95 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCA--NSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 95 ~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
.+.+-++ ++++.+|-.|+.+++.|... ...+.+.+.+.+++ .|+++.||..|+.++..+....++.+..
T Consensus 115 ~l~kDl~-~~n~~ir~lALr~L~~i~~~-------e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~- 185 (621)
T 2vgl_A 115 AIKNDLA-SRNPTFMGLALHCIANVGSR-------EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM- 185 (621)
T ss_dssp HHHHHHH-SCCHHHHHHHHHHHHHHCCH-------HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred HHHHhcC-CCCHHHHHHHHHHhhccCCH-------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-
Confidence 3555666 88999999999999877532 24578999999999 8999999999999999999865544432
Q ss_pred HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.+++.+..++.|+ |+.|+..|+
T Consensus 186 -~~~~~~l~~lL~d~-d~~V~~~a~ 208 (621)
T 2vgl_A 186 -GDWTSRVVHLLNDQ-HLGVVTAAT 208 (621)
T ss_dssp -CSCHHHHHHHTTCS-CHHHHHHHH
T ss_pred -hhHHHHHHHHhCCC-CccHHHHHH
Confidence 35566667788887 999998775
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.002 Score=56.82 Aligned_cols=169 Identities=8% Similarity=-0.027 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHH--
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE-- 86 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~Wpe-- 86 (199)
.++.+|..|+..|.++...+. ..-.-.. ...+-..+++.|.+.+++.+|..++.++..+.+.. .....
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~-~~~~i~~---~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~------~~~~~i~ 95 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEA-SRHAIMR---SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR------EGLLAIF 95 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTT-HHHHHTT---CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCh-hHHHHHh---ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh------hhHHHHH
Confidence 678999999999999875431 1000000 12344668888887668899998888877665331 00111
Q ss_pred ---HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC-hHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 87 ---FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL-WPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 87 ---Ll~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~-~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
.++. |+.++. ++++.++..++.++..++....+.. ... -...+|.|.+.+.+++++++..++.++..++
T Consensus 96 ~~g~i~~-----Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 96 KSGGIPA-----LVKMLG-SPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp TTTHHHH-----HHHHTT-CSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HcCCHHH-----HHHHHh-CCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 1222 556777 7789999999999999886431100 001 1357889999999999999999999999887
Q ss_pred HhhhhhhHH-HHHHHHHHHHHhhCCCCCHHHhh
Q psy15255 163 EIFGNQEST-YLVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 163 e~~~~~l~~-~~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
...++.-.. .....++.+...+.++++.+++.
T Consensus 169 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 201 (644)
T 2z6h_A 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHH
T ss_pred hcCcHHHHHHHHcCChHHHHHHHHcCChHHHHH
Confidence 532221111 11233555566666653444443
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0011 Score=56.48 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
..-..|...|.+ +++.+|..++.+++.++...-.....-.=+..++. ++..+...+++.++..++.++..++..
T Consensus 17 ~~i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~-----Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 17 RAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHH-----HHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 345567778887 89999999999999988542100000000122333 555666456888999988888876532
Q ss_pred hHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 123 LIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 123 ~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
. +. .... ...+|.|.++++++++.+|..|+.++..++..-+..-... ....++.+...+.++ +++++..+
T Consensus 91 ~-~~--~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~ 163 (529)
T 1jdh_A 91 R-EG--LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 163 (529)
T ss_dssp H-HH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHH
T ss_pred c-hh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHH
Confidence 1 10 0011 2468888899999999999999999999987643321111 245667777888887 88887665
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0027 Score=55.96 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
.....|...|.+ +++.+|..+-..++.++... |+++..+ ...++.++. +++..+|..+.+++..++.
T Consensus 313 ~a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~---------p~~~~~~-~~~i~~~l~-d~d~~Ir~~alelL~~l~~- 379 (618)
T 1w63_A 313 LAINILGRFLLN-NDKNIRYVALTSLLKTVQTD---------HNAVQRH-RSTIVDCLK-DLDVSIKRRAMELSFALVN- 379 (618)
T ss_dssp HHHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHH---------HHHHGGG-HHHHHHGGG-SSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhC-CCCchHHHHHHHHHHHHhhC---------HHHHHHH-HHHHHHHcc-CCChhHHHHHHHHHHHHcc-
Confidence 344556666666 67788888777777777542 3332211 113666777 8889999999998887653
Q ss_pred hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHH
Q psy15255 123 LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQ 181 (199)
Q Consensus 123 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~ 181 (199)
...+..+++.+...+.+.+..+|..++.+++.+++.++.....+.+.+..++.
T Consensus 380 ------~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~ 432 (618)
T 1w63_A 380 ------GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLT 432 (618)
T ss_dssp ------SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 24578888888988888999999999999999998776555666666665554
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0018 Score=60.47 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhhc---c-----cHHHHHHHHHHHH
Q psy15255 49 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQTC---D-----NDNIRRKICDAAA 117 (199)
Q Consensus 49 l~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~~---~-----~~~vr~~a~~~i~ 117 (199)
+..|....++.+|..++.+.-..++ ..|..+ -...+|+.++..+... + .+.++++.+.+++
T Consensus 54 ~~iL~~s~~~~vR~faa~~Lk~~I~--------~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la 125 (1023)
T 4hat_C 54 DQILQFSTNPQSKFIALSILDKLIT--------RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125 (1023)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHH--------HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH--------hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHH
Confidence 3444444677888865555554443 346554 4567888888877521 1 3668888999999
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----------------hhHHHHHHHHHHHH
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----------------QESTYLVVIKQMLQ 181 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----------------~l~~~~~~l~~~l~ 181 (199)
.|+....+ ..||++++-+.+.+++ ++...+.++.++..+.|.+.+ .+....+.+.+.+.
T Consensus 126 ~I~~~~~p----~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~ 200 (1023)
T 4hat_C 126 QILKQEWP----QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCF 200 (1023)
T ss_dssp HHHHHHTT----TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCh----hhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987654 5899999999999864 456788999999999887532 12344566777777
Q ss_pred HhhCCCCCHHHhhhhh
Q psy15255 182 QCLLPPNPYSVQALQL 197 (199)
Q Consensus 182 ~~l~d~~~~~Vr~~A~ 197 (199)
.++.+++++++...++
T Consensus 201 ~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 201 QVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHCSSCHHHHHHH
T ss_pred HHHhCCCCHHHHHHHH
Confidence 7776544566654443
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0018 Score=60.64 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=91.2
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH---HHHHHHHHHHHHHhh--------cccHHHHHHHHHHHHH
Q psy15255 50 LLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF---LQNNLKSQIILLLQT--------CDNDNIRRKICDAAAE 118 (199)
Q Consensus 50 ~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL---l~~~ik~~ll~~l~~--------~~~~~vr~~a~~~i~~ 118 (199)
..|....++.+|.-++.++-..++ ..|..+ -...+|+.++..+.. ++++.++.+.+.+++.
T Consensus 67 ~iL~~s~~~~vR~fAa~~L~~~I~--------~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~ 138 (1073)
T 3gjx_A 67 TILEFSQNMNTKYYGLQILENVIK--------TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQ 138 (1073)
T ss_dssp CC---CCSHHHHHHHHHHHHHHHH--------HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH--------hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHH
Confidence 334444677888866655555553 346555 456778888888762 2357888999999999
Q ss_pred HHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh----------------hhHHHHHHHHHHHHH
Q psy15255 119 VARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN----------------QESTYLVVIKQMLQQ 182 (199)
Q Consensus 119 i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~----------------~l~~~~~~l~~~l~~ 182 (199)
|+....+ ..||++++-+.+..++ ++..++.++.++..+.|.+.+ .+....+.|...+..
T Consensus 139 I~k~~~P----~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~ 213 (1073)
T 3gjx_A 139 ILKQEWP----KHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQF 213 (1073)
T ss_dssp HHHHHTT----TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCh----hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987654 5799999999998863 456788999999999987432 122334566777777
Q ss_pred hhCCCCCHHHhhhh
Q psy15255 183 CLLPPNPYSVQALQ 196 (199)
Q Consensus 183 ~l~d~~~~~Vr~~A 196 (199)
+++++.++++...+
T Consensus 214 iL~~~~~~~lv~~~ 227 (1073)
T 3gjx_A 214 VMENSQNAPLVHAT 227 (1073)
T ss_dssp HHHHCCCHHHHHHH
T ss_pred HhcccCCHHHHHHH
Confidence 77654466665443
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0028 Score=57.72 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHhhcch-hhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh-------cCcCCC
Q psy15255 10 SVEERQMSAVLLRKIFST-DFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL-------IDDAGN 81 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~-~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~-------l~~~~~ 81 (199)
++..|..|+--|.|+... +.+..+.. ..... .-.-|++.|.+..+...+..++.+++.|+... ++ .
T Consensus 549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~--~~~~~-aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~---a 622 (810)
T 3now_A 549 TEKGKRHATQALARIGITINPEVSFSG--QRSLD-VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK---E 622 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHTTT--HHHHH-THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---T
T ss_pred CHHHHHHHHHHHHHHhcCCChhhhhcc--hhhhc-HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH---c
Confidence 466777777777776543 32222221 11122 34566777775334444556666666665431 11 2
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh--hhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID--DAGNNLWPEFLQFLFQCANSDNTTLKESALRLFT 159 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~ 159 (199)
+.||.|. .++. ++++.++..|+++++.++..... ... .-...++.|..++.+++..+|+.|+.+++
T Consensus 623 G~l~~Lv---------~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v--~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 623 QGVSKIE---------YYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFE--GNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp THHHHHH---------HHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHH--SSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHH---------HHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHH--hccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4455554 3555 78889999999999988753211 010 00246889999999999999999999999
Q ss_pred hhhHhhhhhhHHHH--HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 160 SVPEIFGNQESTYL--VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 160 ~i~e~~~~~l~~~~--~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++...+....... ...++.+...+.++ |.++|..|+
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~ 729 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGI 729 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHH
Confidence 99985333332222 24566777888887 999998876
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.027 Score=46.33 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHH-----HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNL-----KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~i-----k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
.++++|..|+-.|+++...+ +++.|..| -..|++.|...++..+++.++.++..|+... + .+.
T Consensus 139 ~~~~v~~~A~~aL~nLs~~~--------~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~---~nk 206 (354)
T 3nmw_A 139 ESEDLQQVIASVLRNLSWRA--------DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-T---ENK 206 (354)
T ss_dssp SCHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-H---HHH
T ss_pred CCHHHHHHHHHHHHHHhccC--------CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-h---hhh
Confidence 45677777777777765421 12233333 3456676555477888888888887776411 0 000
Q ss_pred h-----HHHHHHHHHHHHHHHHhhcccH----HHHHHHHHHHHHHHHHhHh-hhccCCh--HHHHHHHHHHhcCCCHHHH
Q psy15255 84 W-----PEFLQNNLKSQIILLLQTCDND----NIRRKICDAAAEVARNLID-DAGNNLW--PEFLQFLFQCANSDNTTLK 151 (199)
Q Consensus 84 W-----peLl~~~ik~~ll~~l~~~~~~----~vr~~a~~~i~~i~~~~~~-~~~~~~~--~~ll~~l~~~~~~~~~~vr 151 (199)
. ...+|. |+.++. ..++ .++..++-++..++.++.. +...... ...+|.|.+.+.+++..++
T Consensus 207 ~~i~~~~Gai~~-----Lv~lL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 207 ADICAVDGALAF-----LVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp HHHHHSTTHHHH-----HHHHTT-CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhcCcHHH-----HHHHhc-cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 0 011232 555666 3332 4788888888877753211 0000111 2368888999999999999
Q ss_pred HHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 152 ESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+.|+.++..++..-++...... ...++.+...++++ ++++|..|+
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~ 326 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSA 326 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHH
Confidence 9999999999843222221111 35567788888887 889987765
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.035 Score=45.61 Aligned_cols=172 Identities=10% Similarity=0.131 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh---cCc--CCCCCh
Q psy15255 10 SVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL---IDD--AGNNLW 84 (199)
Q Consensus 10 ~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~---l~~--~~~~~W 84 (199)
++.+|..|+-.|+|+...+.+.... +. ....+-..|++.|.+ +++.++..++.++..|+... ... ...+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~-i~--~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~- 171 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKAT-LC--SMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS- 171 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHH-HH--HCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH-
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHH-HH--HcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC-
Confidence 3567788888888876544111100 00 012234567788887 88999999998888887430 000 00111
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC---hHHHHHHHHHHhcCCCH----HHHHHHHHH
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL---WPEFLQFLFQCANSDNT----TLKESALRL 157 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~---~~~ll~~l~~~~~~~~~----~vr~~a~~~ 157 (199)
+|. |+.++....++.++..++.++..++....+. ... -...+|.|.+++.+++. .+++.|+.+
T Consensus 172 ---Ip~-----Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n--k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a 241 (354)
T 3nmw_A 172 ---VKA-----LMECALEVKKESTLKSVLSALWNLSAHCTEN--KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241 (354)
T ss_dssp ---HHH-----HHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH--HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH
T ss_pred ---HHH-----HHHHHhcCCCHHHHHHHHHHHHHHHccChhh--hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH
Confidence 222 4455443567888888888888877522110 011 13467888888876643 589999999
Q ss_pred HHhhhHhh---hhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 158 FTSVPEIF---GNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 158 l~~i~e~~---~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+..+..++ ++.-.... ...++.+...+.++ +.+++..|+
T Consensus 242 L~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~ 284 (354)
T 3nmw_A 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC 284 (354)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHH
Confidence 98887631 22111111 23466777788887 888988776
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.02 Score=48.76 Aligned_cols=174 Identities=13% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHH-----HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC-CCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLK-----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNN 82 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik-----~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~-~~~ 82 (199)
.++++|..|+-.|+++...+ +++.|..|. ..|++.|...++..++..++.++..|+...-+.. ...
T Consensus 255 ~~~~v~~~A~~aL~nLs~~~--------~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 255 ESEDLQQVIASVLRNLSWRA--------DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp SCHHHHHHHHHHHHHHTSSC--------CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666666666666664321 123444433 3567766555778888888888888875210000 000
Q ss_pred ChHHHHHHHHHHHHHHHHhhcccH----HHHHHHHHHHHHHHHHhHh-hhccCCh--HHHHHHHHHHhcCCCHHHHHHHH
Q psy15255 83 LWPEFLQNNLKSQIILLLQTCDND----NIRRKICDAAAEVARNLID-DAGNNLW--PEFLQFLFQCANSDNTTLKESAL 155 (199)
Q Consensus 83 ~WpeLl~~~ik~~ll~~l~~~~~~----~vr~~a~~~i~~i~~~~~~-~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~ 155 (199)
.-...++. |+.++. ..++ .++..++-++..++.++.. +...... ...+|.|.+.+.+++..+++.|+
T Consensus 327 ~~~Gal~~-----Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 327 AVDGALAF-----LVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HSTTHHHH-----HHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HhcCcHHH-----HHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence 00011232 455666 3332 4788888888887753211 0000111 23678889999999999999999
Q ss_pred HHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 156 RLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 156 ~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++..++..-++..... ....++.+...+.++ +++++..|+
T Consensus 401 ~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa 442 (458)
T 3nmz_A 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSA 442 (458)
T ss_dssp HHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHH
Confidence 99999984322222111 135567788888887 899887765
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0014 Score=50.92 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNL 123 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~ 123 (199)
.-..+++.|.+ .++.++..+-.++.++++..=+.-..-.-.++++. ++..+. +.+..+..+|..|+..+....
T Consensus 34 ~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~-----iI~llk-~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 34 ALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLERHLDV-----FINALS-QENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----HHHTCC-STTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-----HHHHHh-ccchhHHHHHHHHHHHHHcCC
Confidence 34456666655 89999998888999998873110001223344555 444555 788899999999999887655
Q ss_pred HhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 124 IDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 124 ~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+- ..+...-+...+...+.++++-.++.|...++.+ ... .....++.++...+.+. |.+|+.+|++
T Consensus 107 pL--~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~-----~~~~~V~~~l~sLl~Sk-d~~vK~agl~ 172 (265)
T 3b2a_A 107 PM--GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL-----EDSKLVRTYINELVVSP-DLYTKVAGFC 172 (265)
T ss_dssp CB--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS-----CCCHHHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc-----cchHHHHHHHHHHHhCC-ChhHHHHHHH
Confidence 32 1245566788888888888999999999999887 111 12356677777777776 8899888875
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0066 Score=55.95 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=64.5
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh
Q psy15255 48 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 127 (199)
Q Consensus 48 ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~ 127 (199)
||+.+.+.++..||+.+...+|.++-.. ...=|. ++..+....++.+|..++-+++.+..
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~~g~-----~e~v~r---------lv~~L~~~~d~~VR~gAalALGli~a------ 641 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVLLRD-----YTTVPR---------IVQLLSKSHNAHVRCGTAFALGIACA------ 641 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSS-----CSSHHH---------HTTTGGGCSCHHHHHHHHHHHHHHTS------
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhccCC-----HHHHHH---------HHHHHHhcCCHHHHHHHHHHHHHhcc------
Confidence 5555555577788887777776664221 112222 22333336789999987776664321
Q ss_pred ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 128 GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 128 ~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...-+..+..|..+..|++..||..|+.+++.+.--
T Consensus 642 -Gn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 642 -GKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp -SSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred -CCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 123478888999999999999999999999998743
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0065 Score=48.06 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=78.6
Q ss_pred cCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Q psy15255 36 LAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDA 115 (199)
Q Consensus 36 l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~ 115 (199)
+++..-..+--.|++=+++ +...||.++.+++-.+... ++. ...|+- ++.++. +.+..+|...++.
T Consensus 125 ~~~~ea~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v-~~~--~~v~~~---------l~~g~k-sKN~R~R~e~l~~ 190 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDV-VGP--LKMTPM---------LLDALK-SKNARQRSECLLV 190 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHH-HCH--HHHHHH---------HHHGGG-CSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHH-CCH--HHHHHH---------HHHHHc-cCCHHHHHHHHHH
Confidence 4444444555566666676 6667777777666555432 221 112222 445665 6778888888888
Q ss_pred HHHHHHHhHhhhccCChHHHH---HHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHH
Q psy15255 116 AAEVARNLIDDAGNNLWPEFL---QFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL 173 (199)
Q Consensus 116 i~~i~~~~~~~~~~~~~~~ll---~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~ 173 (199)
+..+.... |.. -...+ |.+.+++.|+|..||.+|+.++..+....++.+..+.
T Consensus 191 l~~li~~~----G~~-~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 191 IEYYITNA----GIS-PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHHHH----CSG-GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhc----CCC-ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77766543 222 23356 8999999999999999999999999988888765543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.034 Score=51.76 Aligned_cols=136 Identities=9% Similarity=0.076 Sum_probs=87.9
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHhhcCcCCCCCh
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD--NDNIRRKICDAAAEVARNLIDDAGNNLW 84 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~--~~~vR~~~~~~ia~la~~~l~~~~~~~W 84 (199)
++.++..|+.|--.|.+.-+. ...|. ..+..|.+.+ ++.+|.-++.++-..++ .++.. ..-
T Consensus 18 p~sd~~~r~~A~~~L~~~q~s--p~aw~------------~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~l~~e--~~~ 80 (980)
T 3ibv_A 18 PSVGPIIKQQATDFIGSLRSS--STGWK------------ICHEIFSEKTKYKPSTRLICLQTLSEKVR-EWNNE--SNL 80 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHS--TTHHH------------HHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HCCTT--TSH
T ss_pred CCCCHHHHHHHHHHHHHHHcC--hhHHH------------HHHHHHhCCCCCCHHHHHHHHHHHHHHHH-hCChh--hhH
Confidence 334667777766666554221 11232 3455555533 67888887777777776 33321 000
Q ss_pred HHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q psy15255 85 PEFLQNNLKSQIILLLQT----CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT-TLKESALRLFT 159 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~----~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vr~~a~~~l~ 159 (199)
+ -...+|+.++..+.. ...+.+|++.+.++..++....+ ..||++++-++++++++++ ..-...++++.
T Consensus 81 ~--~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 81 L--ELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSNFYLKVLL 154 (980)
T ss_dssp H--HHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 0 245677778888773 23567999999999999987654 5999999999999976544 34566777777
Q ss_pred hhhHhh
Q psy15255 160 SVPEIF 165 (199)
Q Consensus 160 ~i~e~~ 165 (199)
.+.|.+
T Consensus 155 ~i~EEv 160 (980)
T 3ibv_A 155 SIGDEI 160 (980)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 777665
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.018 Score=52.42 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q psy15255 43 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122 (199)
Q Consensus 43 ~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~ 122 (199)
.....++..+.+ +++.++..+...++..+...-. ..-+....+ .-|..++. +.++.+|..|.-+++.+...
T Consensus 290 G~v~~li~Ll~s-~~~~~q~~A~~al~~aa~~~~~------R~~I~~~gv-~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~ 360 (810)
T 3now_A 290 GILQMILAMATT-DDELQQRVACECLIAASSKKDK------AKALCEQGV-DILKRLYH-SKNDGIRVRALVGLCKLGSY 360 (810)
T ss_dssp THHHHHHHHHHS-SCHHHHHHHHHHHHHHTTSHHH------HHTTHHHHH-HHHHHHTT-CSCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCcHH------HHHHHHcCc-HHHHHHHc-CCCHHHHHHHHHHHHHhccc
Confidence 445678888888 7889998888888876543210 000111112 23555666 67788999888888887642
Q ss_pred hH-h----hhccCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhhHhhhhh--hHHHHHHHHHHHHHhhCCCCCHHHh
Q psy15255 123 LI-D----DAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQ--ESTYLVVIKQMLQQCLLPPNPYSVQ 193 (199)
Q Consensus 123 ~~-~----~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a~~~l~~i~e~~~~~--l~~~~~~l~~~l~~~l~d~~~~~Vr 193 (199)
.. + .+..+....+++.|.+++.++ ++.+|+.|+.++.++...-+.. +... ...++.+..++.++ ++.++
T Consensus 361 ~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d-~g~Ip~LV~LL~s~-d~~i~ 438 (810)
T 3now_A 361 GGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIED-KASIHALMDLARGG-NQSCL 438 (810)
T ss_dssp TTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHC-HHHHHHHHHHHHTT-CGGGH
T ss_pred cccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHc-cchHHHHHHHhCCC-ChHHH
Confidence 21 1 111133578899999999988 8999999999999998654433 2211 24555566677775 77887
Q ss_pred hhhh
Q psy15255 194 ALQL 197 (199)
Q Consensus 194 ~~A~ 197 (199)
..|.
T Consensus 439 ~~al 442 (810)
T 3now_A 439 YGVV 442 (810)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.018 Score=53.47 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
-..++.+..| ....||.++-.++..+++..=+ ..-+.++|. |+..+....-=..+-.|+.++..++...+
T Consensus 97 ~~~~~~~~~d-k~~~v~~aa~~~~~~~~~~~~~----~a~~~~~~~-----~~~~~~~~~kw~~k~~~l~~~~~~~~~~~ 166 (986)
T 2iw3_A 97 VPAICTNAGN-KDKEIQSVASETLISIVNAVNP----VAIKALLPH-----LTNAIVETNKWQEKIAILAAFSAMVDAAK 166 (986)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSCG----GGHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcC-CchHHHHHHHHHHHHHHHhCCH----HHHHHHHHH-----HHHHhccccchHHHHHHHHHHHHHHHHhH
Confidence 3556677777 7788999888888888877532 122566776 55667633345677778899998887654
Q ss_pred hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCC
Q psy15255 125 DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~ 187 (199)
+ ......|+++|.+..++-|.-+.|..+|..++.++|..++.. +.++++.|+ .|+.+|
T Consensus 167 ~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~----~~~~~p 225 (986)
T 2iw3_A 167 D-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI----QCIADP 225 (986)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH----HHHHCT
T ss_pred H-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH----HHhcCh
Confidence 3 334678999999999999999999999999999999887644 666655544 466676
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.13 Score=43.69 Aligned_cols=165 Identities=11% Similarity=0.140 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhcchhhHhhhhccCHhhHHH------HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh
Q psy15255 11 VEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNN------LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW 84 (199)
Q Consensus 11 ~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~------ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W 84 (199)
+.++.-|+-.|+|+...+ ++.|.. .-..|++.|.+ +++.++..++.+++.|+... ....-
T Consensus 214 ~~l~~~Aa~aL~nLa~~~---------~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~----~~~~k 279 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGD---------VANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA----DVNSK 279 (458)
T ss_dssp HHHHHHHHHHHHHHHTTC---------HHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSC----CHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---------cccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC----CHHHH
Confidence 445666666666665433 122222 23467778886 88999999888888876320 00000
Q ss_pred HHH-----HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCC---hHHHHHHHHHHhcCCCH----HHHH
Q psy15255 85 PEF-----LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL---WPEFLQFLFQCANSDNT----TLKE 152 (199)
Q Consensus 85 peL-----l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~---~~~ll~~l~~~~~~~~~----~vr~ 152 (199)
..+ +|. |+.++....++.++..++.++..++....+. ... -...+|.|.+++.+++. .+++
T Consensus 280 ~~I~~~GaI~~-----LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n--k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~ 352 (458)
T 3nmz_A 280 KTLREVGSVKA-----LMECALEVKKESTLKSVLSALWNLSAHCTEN--KADICAVDGALAFLVGTLTYRSQTNTLAIIE 352 (458)
T ss_dssp HHHHHTTHHHH-----HHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHH
T ss_pred HHHHHcCCHHH-----HHHHHhcCCCHHHHHHHHHHHHHHccCCHHH--HHHHHHhcCcHHHHHHHhcCCCCcchHHHHH
Confidence 111 222 5555443567888888888888887632111 111 13467888888876543 4899
Q ss_pred HHHHHHHhhhHh---hhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 153 SALRLFTSVPEI---FGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 153 ~a~~~l~~i~e~---~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.|+.++..+..+ -++...... ...++.+...+.++ +.+++..|+
T Consensus 353 ~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~ 400 (458)
T 3nmz_A 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC 400 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHH
Confidence 999999888763 222111111 24566777888887 888998876
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.045 Score=45.06 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+...|.+.-+.++...+. +++.- -+-+.+-+=+.+ +++.+|..+-.+.+.|.. ...-+.+.
T Consensus 80 ~d~~lKrLvYLyl~~~~~~---------~~e~i-Lv~Nsl~kDl~~-~N~~iR~lALRtL~~I~~-------~~m~~~l~ 141 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI---------AEDVI-IVTSSLTKDMTG-KEDSYRGPAVRALCQITD-------STMLQAIE 141 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT---------SSCGG-GGHHHHHHHHHS-SCHHHHHHHHHHHHHHCC-------TTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---------HHHHH-HHHHHHHhhcCC-CcHhHHHHHHHHHhcCCC-------HHHHHHHH
Confidence 5666777766666655332 33333 455666667777 888888776666666642 23334443
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
+. +-+++. +.++.||++|+-++..+....++ .... ++..+.+++.|.++.|...|+.++..+.+
T Consensus 142 ~~-----lk~~L~-d~~pyVRk~A~l~~~kL~~~~pe--~v~~---~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 142 RY-----MKQAIV-DKVPSVSSSALVSSLHLLKCSFD--VVKR---WVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HH-----HHHHHT-CSSHHHHHHHHHHHHHHTTTCHH--HHHT---THHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HH-----HHHHcC-CCCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 32 445666 88889998888887766543332 1122 46666777788888888888888877764
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.047 Score=46.12 Aligned_cols=127 Identities=8% Similarity=0.042 Sum_probs=79.2
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.++..|.+ +++.++..++..+..++... ...+..+...-.=..|+.++. ++++.++..|+.++..|+..-.+.
T Consensus 6 ~lv~~L~s-~~~~~q~~A~~~L~~l~~~~-----~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 6 KAVQYLSS-QDEKYQAIGAYYIQHTCFQD-----ESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHS-SCTHHHHHHHHHHHHHTSSC-----SSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 46777887 78888988888888876321 233433311100112566887 788899999999998887521110
Q ss_pred hccCCh--HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHhh
Q psy15255 127 AGNNLW--PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIFGNQEST-YLVVIKQMLQQCL 184 (199)
Q Consensus 127 ~~~~~~--~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~~~l~~~l~~~l 184 (199)
.... ..-+|.|.+++. ++++.+++.|+.++..++.. + +... .....++.+...+
T Consensus 79 --k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~-~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 --KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-D-ELKEELIADALPVLADRV 136 (457)
T ss_dssp --HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-S-STHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-H-HhHHHHHhccHHHHHHHH
Confidence 0001 123667777777 78999999999999999876 2 2221 1224555566666
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.013 Score=45.39 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
+.+ ++...||-.|+..++.. . .-++.++.+.. ...|++|.||+.+..+++.++...+.+ ..+
T Consensus 79 L~~-~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 79 AYQ-SDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHT-CSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHh-CcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 444 78899999988866543 1 23778888887 667899999999999999998733322 133
Q ss_pred HHHHHhhCCCCCHHHhhhhhc
Q psy15255 178 QMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.+..-.+|+ ++.||-.|.+
T Consensus 142 ~~~~~W~~d~-n~~VRR~Ase 161 (240)
T 3l9t_A 142 PIIDEWLKSS-NLHTRRAATE 161 (240)
T ss_dssp HHHHHHHHCS-SHHHHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHH
Confidence 4566677886 8999988765
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.06 Score=42.28 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy15255 81 NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTS 160 (199)
Q Consensus 81 ~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~ 160 (199)
....|++++. ++. |+.+++..+|+...+.+.+.+..- ....+..++.+..++.|+++.|-..+..+.+.
T Consensus 48 p~ll~~~l~~-----il~-~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 48 AELAEEFLES-----VLS-LAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIKRVIQACGS 116 (257)
T ss_dssp GGGHHHHHHH-----HHG-GGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHH-----HHH-hccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4566777775 445 344788889998877777766432 35778999999999999999999888888888
Q ss_pred hhHhhhhhh-------------HHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 161 VPEIFGNQE-------------STYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 161 i~e~~~~~l-------------~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+....-+.+ =..+..+...+.+.+.+. +..||..|+||
T Consensus 117 iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF 167 (257)
T 3gs3_A 117 IYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKF 167 (257)
T ss_dssp HHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHH
Confidence 764332211 123445556666666665 88999999998
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.049 Score=42.77 Aligned_cols=104 Identities=11% Similarity=0.138 Sum_probs=68.3
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhc--
Q psy15255 51 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG-- 128 (199)
Q Consensus 51 ~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~-- 128 (199)
+|++ +.+.+|..+..++-.++....+. ..+++. ++.++. ..++.+|..++..+..++..+.....
T Consensus 111 ~l~~-~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~-----l~~~l~-~Knpkv~~~~l~~l~~~l~~fg~~~~~~ 177 (278)
T 4ffb_C 111 GLTS-SRATTKTQSMSCILSLCGLDTSI------TQSVEL-----VIPFFE-KKLPKLIAAAANCVYELMAAFGLTNVNV 177 (278)
T ss_dssp TSSC-CCHHHHHHHHHHHHHHHHTSSSS------HHHHHH-----HGGGGG-CSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred HhcC-ccHHHHHHHHHHHHHHHHhcCcH------HHHHHH-----HHHHHh-ccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 3555 67778877777766665443221 122222 334555 77899999888888887765432110
Q ss_pred cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh
Q psy15255 129 NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGN 167 (199)
Q Consensus 129 ~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~ 167 (199)
....+.+++.+..++.|+|+.||.+|..+++.+...+++
T Consensus 178 k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 178 QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 112456777888999999999999999999999877764
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.021 Score=49.89 Aligned_cols=135 Identities=16% Similarity=0.064 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCC----CCChHHHHHHHHHHHHHHHHh------hc-ccHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAG----NNLWPEFLQNNLKSQIILLLQ------TC-DNDNIRRKI 112 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~----~~~WpeLl~~~ik~~ll~~l~------~~-~~~~vr~~a 112 (199)
+-..|+.-|-+ +.=.+||-+|....+++|..=...+ .+. ++.- |---+.++. ++ -...||..+
T Consensus 175 fcE~L~~DLFd-p~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAv---RLLCVLALDRFGDYVSDqVVAPVRETa 248 (800)
T 3oc3_A 175 FFEQISDNLLS-YEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFS---KIYEILVTDKFNDFVDDRTVAPVRDAA 248 (800)
T ss_dssp TTHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHH---HHHHHHHHBCCBBCSSSSCBCHHHHHH
T ss_pred HHHHHHHHhcC-cchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHH---HHHHHHHhccccccccCeeeeehHHHH
Confidence 55667777888 8889999999999999998632111 122 4321 111112221 22 347799999
Q ss_pred HHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHH
Q psy15255 113 CDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSV 192 (199)
Q Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~V 192 (199)
+++++.+ .++++ .. .++..++..+..+.|++|.+|+-.+-++.+.+. . .+.+.+.+..+++|+ |.+|
T Consensus 249 AQtLGaL-~hLp~-----e~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~----~-Ld~Vv~aVL~GL~D~-DDDV 315 (800)
T 3oc3_A 249 AYLLSRI-YPLIG-----PN-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE----D-KDGLCRKLVSLLSSP-DEDI 315 (800)
T ss_dssp HHHHHHH-TTTSC-----SC-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC----C-HHHHHHHHHHHTTCS-SHHH
T ss_pred HHHHHHH-HhCCh-----hH-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH----H-HHHHHHHHHhhcCCc-ccHH
Confidence 9999987 55443 22 233333345577899999999999999833332 2 688888999999998 9999
Q ss_pred hhhhh
Q psy15255 193 QALQL 197 (199)
Q Consensus 193 r~~A~ 197 (199)
|..|.
T Consensus 316 RAVAA 320 (800)
T 3oc3_A 316 KLLSA 320 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97764
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.039 Score=45.44 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=67.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
+.+=++ ++++-+|-.|..+++.|.. ..-.+.+.+.+.+++.|.+|-||.+|+-+...++...++-...+
T Consensus 109 l~kDl~-~~N~~iR~lALRtL~~I~~-------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~--- 177 (355)
T 3tjz_B 109 LTKDMT-GKEDSYRGPAVRALCQITD-------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRW--- 177 (355)
T ss_dssp HHHHHH-SSCHHHHHHHHHHHHHHCC-------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT---
T ss_pred HHhhcC-CCcHhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHH---
Confidence 445555 7899999999888887653 23567899999999999999999999999998887765544443
Q ss_pred HHHHHHHhhCCCCCHHHhhhhh
Q psy15255 176 IKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 176 l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..-+..++.|. ++-|...|+
T Consensus 178 -~~~l~~ll~d~-n~~V~~~Al 197 (355)
T 3tjz_B 178 -VNEAQEAASSD-NIMVQYHAL 197 (355)
T ss_dssp -HHHHHHHTTCS-SHHHHHHHH
T ss_pred -HHHHHHHhcCC-CccHHHHHH
Confidence 44455567776 888876664
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.14 Score=44.89 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=90.9
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHH-----HHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 45 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLK-----SQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 45 k~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik-----~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
-..|+..|.+..++.++..++-++..|.. +...|++-.+..+. ..|+.++. .+++.++..++.++..+
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~a------g~~~~~~~~~~~v~~~~glp~Lv~LL~-s~~~~v~~~A~~aL~nL 382 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCA------GRWTYGRYIRSALRQEKALSAIADLLT-NEHERVVKAASGALRNL 382 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHS------SCSHHHHHHHHHHTSHHHHHHHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHc------CCccccHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 35678888776788999988888888862 23334443343332 24777887 77889999999998887
Q ss_pred HHHhHhhhccCCh-HHHHHHHHHHhcCC--------CHHHHHHHHHHHHhhhHhhhhhhHHHH-HHHHHHHHHhhCCC-C
Q psy15255 120 ARNLIDDAGNNLW-PEFLQFLFQCANSD--------NTTLKESALRLFTSVPEIFGNQESTYL-VVIKQMLQQCLLPP-N 188 (199)
Q Consensus 120 ~~~~~~~~~~~~~-~~ll~~l~~~~~~~--------~~~vr~~a~~~l~~i~e~~~~~l~~~~-~~l~~~l~~~l~d~-~ 188 (199)
+..... .... ...+|-|.+++.++ +..++..|+.+++.++..-+++-.... ...++.+...+.++ .
T Consensus 383 s~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~ 459 (584)
T 3l6x_A 383 AVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR 459 (584)
T ss_dssp HTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSS
T ss_pred hCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCC
Confidence 752210 0111 34678888888765 457889999999988754332222111 24455566677663 2
Q ss_pred CHHHhhhhh
Q psy15255 189 PYSVQALQL 197 (199)
Q Consensus 189 ~~~Vr~~A~ 197 (199)
++.++.+|+
T Consensus 460 ~~~v~k~Aa 468 (584)
T 3l6x_A 460 SEKEVRAAA 468 (584)
T ss_dssp CHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 667776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.00 E-value=0.099 Score=48.29 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=73.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH-------H--------------------HHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL-------K--------------------SQIIL 98 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i-------k--------------------~~ll~ 98 (199)
+.+++.+.+..+..+|+.++..+|.+.-. .....+.++..+. | +.|+.
T Consensus 510 ~~LL~~~~e~~~e~vrR~aalgLGll~~g-----~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 510 HDMFTYSQETQHGNITRGLAVGLALINYG-----RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhhhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555546777888888777766311 1234444433321 1 01444
Q ss_pred HHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHH
Q psy15255 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIK 177 (199)
Q Consensus 99 ~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~ 177 (199)
.+..+.++.||..|+..++.|+. . . ++..+-++. +.++.++.+|.+|..+++.++..-+. ..++
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~---g---~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~ai 649 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLL---R---D---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAI 649 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTS---S---S---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhcc---C---C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHH
Confidence 44446667777666555554331 1 1 123333444 34567888888888888877643221 2344
Q ss_pred HHHHHhhCCCCCHHHhhhhh
Q psy15255 178 QMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 178 ~~l~~~l~d~~~~~Vr~~A~ 197 (199)
..+.....|+ |..||..|+
T Consensus 650 d~L~~L~~D~-d~~Vrq~Ai 668 (963)
T 4ady_A 650 DVLDPLTKDP-VDFVRQAAM 668 (963)
T ss_dssp HHHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHccCC-CHHHHHHHH
Confidence 4556667887 999998875
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.11 Score=43.82 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH-HHHHH-----HHHHHHHhhcccHHHHHHHHHHHH
Q psy15255 44 LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL-QNNLK-----SQIILLLQTCDNDNIRRKICDAAA 117 (199)
Q Consensus 44 ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl-~~~ik-----~~ll~~l~~~~~~~vr~~a~~~i~ 117 (199)
+-..|+..|.+.+++.++..++-+++.+... +..|+.-. +..+. ..|+.++. +++..++..|+.++.
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~------~~~~~~~~~~~~v~~~~~l~~Lv~LL~-~~~~~v~~~A~~aL~ 356 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTAS------KGLMSSGMSQLIGLKEKGLPQIARLLQ-SGNSDVVRSGASLLS 356 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC------SSSHHHHHHHHHHTTSCCHHHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccC------cCcchHHHHHHHHHHcCCchHHHHHHh-CCCHhHHHHHHHHHH
Confidence 3445788888877889999888888888632 33443222 33331 23667888 788999999999998
Q ss_pred HHHHHhHhhhccCChHHHHHHHHHHhcCCC------HHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCH
Q psy15255 118 EVARNLIDDAGNNLWPEFLQFLFQCANSDN------TTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPY 190 (199)
Q Consensus 118 ~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~ 190 (199)
.++....... .--...+|.|.+.+.+++ ..+...++.+++.++..-++.-... ....++.+...+.++.++
T Consensus 357 nls~~~~~~~--~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~ 434 (457)
T 1xm9_A 357 NMSRHPLLHR--VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434 (457)
T ss_dssp HHHTSGGGHH--HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHH--HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence 8865221000 001346777888887664 3577889999998875433221111 123344455555553267
Q ss_pred HHhhhhh
Q psy15255 191 SVQALQL 197 (199)
Q Consensus 191 ~Vr~~A~ 197 (199)
+++..|+
T Consensus 435 ~i~~~A~ 441 (457)
T 1xm9_A 435 KAAEAAR 441 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=95.65 E-value=1 Score=39.45 Aligned_cols=101 Identities=11% Similarity=-0.051 Sum_probs=64.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHh---Hhhhc-cCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNL---IDDAG-NNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST 171 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~---~~~~~-~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~ 171 (199)
|+.+++...++.++..|+.++..++..- ..... .-.-..-+|.|.+++.+++..+++.|+.+|.+++..-..+ ..
T Consensus 313 Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~-~~ 391 (584)
T 3l6x_A 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK-EL 391 (584)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH-HH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH-HH
Confidence 5668875677889988888888775311 00000 0011245899999999999999999999999998653322 11
Q ss_pred HHHHHHHHHHHhhCCCC-------CHHHhhhhh
Q psy15255 172 YLVVIKQMLQQCLLPPN-------PYSVQALQL 197 (199)
Q Consensus 172 ~~~~l~~~l~~~l~d~~-------~~~Vr~~A~ 197 (199)
.-...++-+.+.|.+++ +.+++..||
T Consensus 392 I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~ 424 (584)
T 3l6x_A 392 IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISIL 424 (584)
T ss_dssp HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHH
T ss_pred HHhCCHHHHHHHhcCCcccccccchHHHHHHHH
Confidence 12345556666666642 356676665
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.56 Score=35.27 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHh
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQC 183 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~ 183 (199)
.++.+|-....++.+|+..-+. ..+.+..-++.++.|+|..-|.+|+.-++.+.+. --.|..-.++-+...
T Consensus 119 gd~kikIn~~yaLeeIaranP~-----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen----~~~yv~PfLprL~aL 189 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKANPM-----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN----SFKYVNPFLPRIINL 189 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT----THHHHGGGHHHHHGG
T ss_pred CCccceecHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc----CccccCcchHHHHHH
Confidence 4666776666666666654332 4456666667777777777777777766665443 223555556677778
Q ss_pred hCCCCCHHHhhhhhc
Q psy15255 184 LLPPNPYSVQALQLK 198 (199)
Q Consensus 184 l~d~~~~~Vr~~A~~ 198 (199)
+.|. |.-||..|++
T Consensus 190 L~D~-deiVRaSaVE 203 (253)
T 2db0_A 190 LHDG-DEIVRASAVE 203 (253)
T ss_dssp GGCS-SHHHHHHHHH
T ss_pred HcCc-chhhhHHHHH
Confidence 8887 8889988874
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.19 Score=38.89 Aligned_cols=136 Identities=12% Similarity=-0.010 Sum_probs=85.6
Q ss_pred hhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHH
Q psy15255 31 EIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRR 110 (199)
Q Consensus 31 ~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~ 110 (199)
..+..++ .+.++.....+..+ +...||--++.+++.+ + + . ++.++. +-..+..+++=.||.
T Consensus 62 ~~~~~~~---~~~~~~la~~L~~~-~~deVR~~Av~lLg~~-~---~-----~-~~~L~~-----ir~~va~D~~WrVre 122 (240)
T 3l9t_A 62 TDYKSND---GEYIKKLAFLAYQS-DVYQVRMYAVFLFGYL-S---K-----D-KEILIF-----MRDEVSKDNNWRVQE 122 (240)
T ss_dssp HHHHHSC---HHHHHHHHHHHHTC-SSHHHHHHHHHHHHHT-T---T-----S-HHHHHH-----HHHTGGGCSCHHHHH
T ss_pred HHHHhCC---HHHHHHHHHHHHhC-cchHHHHHHHHHHHhc-c---C-----c-HHHHHH-----HHHHhCCCCCccHHH
Confidence 3444444 45566556666666 7789999888877765 2 1 1 344442 112244467777887
Q ss_pred HHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCH
Q psy15255 111 KICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPY 190 (199)
Q Consensus 111 ~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~ 190 (199)
-++..+..++... .-...++.+.+.+.|+++.+|..|....-..+.. + ......+.+.+++.....|+ +.
T Consensus 123 ~lA~a~~~~~~~~-------~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~-s~ 192 (240)
T 3l9t_A 123 VLAKAFDEFCKKI-------EYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDV-SE 192 (240)
T ss_dssp HHHHHHHHHHHHH-------CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCS-CH
T ss_pred HHHHHHHHHHHhc-------CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCCh-HH
Confidence 7777776665411 1123678888999999999999998886543332 1 22233467788888887886 77
Q ss_pred HHhhh
Q psy15255 191 SVQAL 195 (199)
Q Consensus 191 ~Vr~~ 195 (199)
-||.+
T Consensus 193 yVrKS 197 (240)
T 3l9t_A 193 YVRKS 197 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.18 Score=41.90 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy15255 82 NLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSV 161 (199)
Q Consensus 82 ~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i 161 (199)
..-+++++. ++. |+.+++..+|..+.+.+.+.+..- ....+..++.|..++.|+++.|-..+..+.+.+
T Consensus 59 sLl~~fl~~-----il~-f~~d~~~~vRk~~a~FieEa~~~~-----~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 59 TLLDNFLDE-----IIA-FQADKSIEVRKFVIGFIEEACKRD-----IELLLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGGGGHHH-----HHG-GGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHH-hccCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344555554 332 334778899999888887766532 346799999999999999999988888888877
Q ss_pred hHhhhhh-------------hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 162 PEIFGNQ-------------ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 162 ~e~~~~~-------------l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
....-+. .=..+..+...+...+.+. +..||+.|+||
T Consensus 128 Ypl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-n~GVrl~aiKF 177 (386)
T 3o2t_A 128 YKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD-NDGIRTHAIKF 177 (386)
T ss_dssp HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHH
Confidence 6332211 1122445555566666665 88999999998
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.82 Score=37.15 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCC-----CCChHHHHHHHHHH----------------------------------HHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAG-----NNLWPEFLQNNLKS----------------------------------QII 97 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~-----~~~WpeLl~~~ik~----------------------------------~ll 97 (199)
+-..|+.++++.+.+.|.-..... -..+|+++..+++. .++
T Consensus 91 ~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF 170 (341)
T 1upk_A 91 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFF 170 (341)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHH
T ss_pred CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHH
Confidence 446688888888888876654321 12367777776642 123
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHH---hHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARN---LIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTY 172 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~ 172 (199)
..++ .++-.+..-|..+.-++... +...++..+++.++..+.+++++++--.|.-+++.++.+.-..... +..|
T Consensus 171 ~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Y 249 (341)
T 1upk_A 171 RYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKY 249 (341)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHH
T ss_pred HHhc-CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3333 45555555554444433221 0112334678889999999999999999999999999998764433 4455
Q ss_pred HH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++ .-+.++...+.|+ +..||.+|+
T Consensus 250 is~~~nLkl~M~LL~d~-sk~Iq~EAF 275 (341)
T 1upk_A 250 ISKPENLKLMMNLLRDK-SRNIQFEAF 275 (341)
T ss_dssp TTCHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCc-hhchhhhhh
Confidence 43 3355667789998 999999986
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.43 Score=43.13 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcC---cCCCCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLID---DAGNNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~---~~~~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
..+.+.|.+ ++..||++++.+++.++..--. .-.+...|.- ++. |+.+++ +++..+|..|+-+++.+
T Consensus 609 ~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l-----LV~Ll~-s~D~~~r~AAagALAnL 681 (778)
T 3opb_A 609 STIENLMLD-ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI-----LVKLLQ-LSDVESQRAVAAIFANI 681 (778)
T ss_dssp HHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH-----HHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH-----HHHHHc-CCCHHHHHHHHHHHHHh
Confidence 345555555 7889999999999999964421 1112223431 333 556776 78899999988888877
Q ss_pred HHHhHhhh-ccCChHHHHHHHHHHhcC--CCHHHHHHHHHHHHhhhHhhhh-----hhHHHH--HHHHHHHHHhhCCC
Q psy15255 120 ARNLIDDA-GNNLWPEFLQFLFQCANS--DNTTLKESALRLFTSVPEIFGN-----QESTYL--VVIKQMLQQCLLPP 187 (199)
Q Consensus 120 ~~~~~~~~-~~~~~~~ll~~l~~~~~~--~~~~vr~~a~~~l~~i~e~~~~-----~l~~~~--~~l~~~l~~~l~d~ 187 (199)
........ ..-.-+..++.+...+++ ++..+|..++.++..++++.+. .+..+. ..+...+...++++
T Consensus 682 ts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 682 ATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred cCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 54332100 011224667777778877 7999999999999999985432 233333 24555566666665
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.83 Score=35.46 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=98.8
Q ss_pred ccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy15255 35 KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114 (199)
Q Consensus 35 ~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~ 114 (199)
.+++++-..+-..+...+.+ ++..++--++...|.+ +.. ..-|.+... ++.++. +.++.++..+..
T Consensus 107 pL~~~~y~Kl~~aL~dlik~-~~~il~~eaae~Lgkl-kv~------~~~~~V~~~-----l~sLl~-Skd~~vK~agl~ 172 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLLES-PDDMMRIETIDVLSKL-QPL------EDSKLVRTY-----INELVV-SPDLYTKVAGFC 172 (265)
T ss_dssp CBCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHC-CBS------CCCHHHHHH-----HHHHHT-CSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcC-CCchHHHHHHHHhCcC-Ccc------cchHHHHHH-----HHHHHh-CCChhHHHHHHH
Confidence 45667767777778888885 9999999888888887 222 223444433 555664 899999988888
Q ss_pred HHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh-hhhhhHHHHHHHHHHHHHhh-CCCCCHHH
Q psy15255 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI-FGNQESTYLVVIKQMLQQCL-LPPNPYSV 192 (199)
Q Consensus 115 ~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~-~~~~l~~~~~~l~~~l~~~l-~d~~~~~V 192 (199)
.+.+|+....+ ...|..++.-+-.++++.|+.+++-|+.++-.+..+ +..++.+..-.+.....+.. --+ .|.+
T Consensus 173 ~L~eia~~S~D---~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~-~~~~ 248 (265)
T 3b2a_A 173 LFLNMLNSSAD---SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG-APII 248 (265)
T ss_dssp HHHHHGGGCSS---CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSS-CHHH
T ss_pred HHHHhhcccCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcC-ChhH
Confidence 88887765432 578999999999999999999999999999888765 11222333333444444433 344 5677
Q ss_pred hhhh
Q psy15255 193 QALQ 196 (199)
Q Consensus 193 r~~A 196 (199)
|..|
T Consensus 249 ~~ka 252 (265)
T 3b2a_A 249 RLKA 252 (265)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.02 Score=51.06 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++|++. .++++++..|..|+.+++.+++.-... +.-+.+.|..++..++.|+ +.+||.+|.
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~ 97 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGW 97 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHH
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHH
Confidence 4677654 488999999999999999999743221 3334467778888899998 999999886
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=45.22 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=24.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 139 LFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 139 l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+..++.|++|.||..+...++ .+.+... +|+ +..||.+|.+
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~-~~~VR~aa~~ 239 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEP-DPEVRLAIAG 239 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCC-CHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCC-CHHHHHHHHH
Confidence 334455555556555555533 2344444 887 9999988753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.22 Score=43.61 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHH
Q psy15255 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDN-DNIRRKICDAAAEV 119 (199)
Q Consensus 41 ~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~-~~vr~~a~~~i~~i 119 (199)
...+...++.+|++ ++..||..+|.+..-++ ....-+.++.. +..++..-++ ..-.....+.++.+
T Consensus 297 Ld~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA-------~p~~l~~LL~i-----LWd~L~~LDDLSASTgSVMdLLAkL 363 (800)
T 3oc3_A 297 KDGLCRKLVSLLSS-PDEDIKLLSAELLCHFP-------ITDSLDLVLEK-----CWKNIESEELISVSKTSNLSLLTKI 363 (800)
T ss_dssp HHHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC-------CSSTHHHHHHH-----HHHHHHTCCSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC-cccHHHHHHHHHhhhhc-------chhhHHHHHHH-----HHHHhhhhcccchhhHHHHHHHHHH
Confidence 67888899999999 78899987666655554 23445555543 5556652221 11122344555555
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
...-. ....-|+++|-++-.+.++-+.||.++++++..+. ..+.+.-++++.+-.+ +++|+..+.+
T Consensus 364 ~s~p~---~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL---------~~~~LRLIFQNILLE~-neeIl~lS~~ 429 (800)
T 3oc3_A 364 YRENP---ELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS---------EESIDFLVAEVVLIEE-KDEIREMAIK 429 (800)
T ss_dssp HHHCT---TCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC---------CHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred HcCCc---ccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhCC-cHHHHHHHHH
Confidence 44321 12233588899999999999999999999998887 1133444556666665 7888876653
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.14 Score=39.58 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=58.9
Q ss_pred HHHHHhhcccH--HHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--h
Q psy15255 96 IILLLQTCDND--NIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--E 169 (199)
Q Consensus 96 ll~~l~~~~~~--~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l 169 (199)
+++++. ++++ .++..++..+..++..-.+. .... ..-+|.|.+++.++++.+|+.|+.++..+...-++. .
T Consensus 13 lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~--r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 13 AVSMLE-ADHMLPSRISAAATFIQHECFQKSEA--RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHH--HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHH--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344666 4444 77777777777666433221 0011 124688889999999999999999999998632222 1
Q ss_pred HHHHHHHHHHHHHhhC-CCCCHHHhhhhh
Q psy15255 170 STYLVVIKQMLQQCLL-PPNPYSVQALQL 197 (199)
Q Consensus 170 ~~~~~~l~~~l~~~l~-d~~~~~Vr~~A~ 197 (199)
...... ++.+...+. .+ +.+++..|+
T Consensus 90 I~~~Ga-I~~Lv~lL~~~~-~~~~~e~a~ 116 (233)
T 3tt9_A 90 VAELNG-VPRLLQVLKQTR-DLETKKQIT 116 (233)
T ss_dssp HHHTTH-HHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHcCC-HHHHHHHHccCC-CHHHHHHHH
Confidence 111123 444445665 44 778887664
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=93.48 E-value=1.8 Score=32.41 Aligned_cols=74 Identities=11% Similarity=0.211 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHhh---hccCChHHHHHHHHHHhcCC---CHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCC
Q psy15255 114 DAAAEVARNLIDD---AGNNLWPEFLQFLFQCANSD---NTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPP 187 (199)
Q Consensus 114 ~~i~~i~~~~~~~---~~~~~~~~ll~~l~~~~~~~---~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~ 187 (199)
..+..++..+..+ +...+..+|+|.+..|+-.. ...+|+.|...++.++..+++.-..-...|...+...+.||
T Consensus 64 ~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp 143 (196)
T 4atg_A 64 KTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP 143 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC
Confidence 4455555555542 23467889999999999643 23799999999999999887654445577888888888886
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.39 Score=43.46 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=61.2
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhHh---hhccCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhh---
Q psy15255 97 ILLLQTCDNDNIRRKICDAAAEVARNLID---DAGNNLWPE---FLQFLFQCANSDNTTLKESALRLFTSVPEIFGN--- 167 (199)
Q Consensus 97 l~~l~~~~~~~vr~~a~~~i~~i~~~~~~---~~~~~~~~~---ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~--- 167 (199)
..++. +++..+|..|+++++.++..... .+.....|. =++.+.+++.++|..+|++|..+++.+....+.
T Consensus 612 ~~LL~-s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 612 ENLML-DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp HHGGG-CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 33444 67889999999999998863321 111122233 277889999999999999999999998654332
Q ss_pred hh-H--HHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 168 QE-S--TYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 168 ~l-~--~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
.+ . ..++.++.++... .+ ++++|.-+
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~--~~-~~~l~~R~ 719 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQ--ID-DIELRQRL 719 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHT--TT-CHHHHHHH
T ss_pred HHHHccccHHHHHHHHhcc--CC-CHHHHHHH
Confidence 22 1 2334444444432 14 67776544
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.21 Score=44.53 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=48.8
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-ccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
+++.++ ++++..|..||.+++.|+. ..... ....-..+.+.+..++.|++..||+.|..+|..++..-+
T Consensus 39 ll~~L~-S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 39 VLKDLK-SPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHHHS-SSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 555677 7889999999999998874 22110 001112344566778899999999999999999986543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.8 Score=39.09 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHH
Q psy15255 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQ 182 (199)
Q Consensus 103 ~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~ 182 (199)
..++..+..|++.|......+++ .-++-+..++.++.|.|..||..|++.+..+|.. .+...+..++.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~-----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE-----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG-----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 46678888888887776665543 4566788889999999999999999999999865 234555555556
Q ss_pred hhCC
Q psy15255 183 CLLP 186 (199)
Q Consensus 183 ~l~d 186 (199)
+++.
T Consensus 108 lLqt 111 (507)
T 3u0r_A 108 LLQT 111 (507)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6665
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=91.17 E-value=1.4 Score=41.04 Aligned_cols=142 Identities=10% Similarity=0.126 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhh-cCcCCCCChHHHHHH
Q psy15255 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDN-DNIRRKICDAAAEVARNL-IDDAGNNLWPEFLQN 90 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~-~~vR~~~~~~ia~la~~~-l~~~~~~~WpeLl~~ 90 (199)
.|..+...+.-.+..+ +-.++++.+..|...++.+|.| +. ..||..++++.+.+++.. ... .=.++...
T Consensus 817 ~R~~~L~~lq~~~f~n----~f~l~~~~~~~i~~~v~~~L~D-~q~~EVRe~Aa~tLsgll~c~~~~~----~~~~li~~ 887 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAE----LLQLTEEEKNKILEFVVSNLYN-EQFVEVRVRAASILSDIVHNWKEEQ----PLLSLIER 887 (997)
T ss_dssp SHHHHHHHHHHHHHHH----TTTSCTTHHHHTHHHHTTTTTC-SSCHHHHHHHHHHHHHHHHSCCSHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCchh----hHHHHHHH
Confidence 7777776766666555 4457778888999999999999 77 999999999999998654 210 00111111
Q ss_pred HHHHHHHHHHhh-----------cccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy15255 91 NLKSQIILLLQT-----------CDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLF 158 (199)
Q Consensus 91 ~ik~~ll~~l~~-----------~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l 158 (199)
+. ..+.. ..+...||.|.-.++.++...+=+...+.| |+++..|...+.++++ ++.++=+++
T Consensus 888 f~-----~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tl 961 (997)
T 1vsy_5 888 FA-----KGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTI 961 (997)
T ss_dssp HT-----TSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHH
T ss_pred HH-----HHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHH
Confidence 00 00100 001135666555555555444311111456 7888888777777665 999999999
Q ss_pred HhhhHhhhhhh
Q psy15255 159 TSVPEIFGNQE 169 (199)
Q Consensus 159 ~~i~e~~~~~l 169 (199)
+.|-....+..
T Consensus 962 seFkrTH~D~W 972 (997)
T 1vsy_5 962 SEFKKVRADTW 972 (997)
T ss_dssp HHHHHHTSTTH
T ss_pred HHHHhccchhH
Confidence 98766554443
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.90 E-value=4.7 Score=31.40 Aligned_cols=114 Identities=12% Similarity=0.308 Sum_probs=79.5
Q ss_pred CHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 37 AVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 37 ~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
+++--..+-..+++...+ ++..||+.++..+++..+.. ...=+..+++ |..++. ++++.|-+++..+.
T Consensus 47 dp~ll~~~l~~il~~~~~-~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~-----L~~Ll~-d~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 47 CAELAEEFLESVLSLAHD-SNMEVRKQVVAFVEQVCKVK-----VELLPHVINV-----VSMLLR-DNSAQVIKRVIQAC 114 (257)
T ss_dssp TGGGHHHHHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHH-----HHHHTT-CSCHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-----HHHHHc-CCCHHHHHHHHHHH
Confidence 344555666667775555 88999999999999998553 2233344443 556666 78899988888887
Q ss_pred HHHHHHhHh----hhc-----cCChH---HHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 117 AEVARNLID----DAG-----NNLWP---EFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 117 ~~i~~~~~~----~~~-----~~~~~---~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
+.+-..... ... ...|. .+...+++...+.+..+|..+++-+..++
T Consensus 115 ~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 115 GSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 777655543 111 24675 46677888888889999999999888766
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=90.59 E-value=0.044 Score=42.68 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=12.4
Q ss_pred HHHHhhCCCCCHHHhhhhh
Q psy15255 179 MLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 179 ~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+...++|+ +..||.++.
T Consensus 198 ~L~~Ll~D~-d~~VR~~aa 215 (244)
T 1lrv_A 198 DLLELLHDP-DWTVRLAAV 215 (244)
T ss_dssp GGGGGGGCS-SHHHHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHH
Confidence 345567786 888887764
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=89.16 E-value=9.8 Score=32.49 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=83.3
Q ss_pred cCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-H
Q psy15255 7 AGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-P 85 (199)
Q Consensus 7 ~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-p 85 (199)
...++...++|+-++-+.++. ++.+.++.- ..++.+..+ ++..||.++-.-+..+.+. .| +
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~-----FP~l~~~Ai----~a~lDLcED-ed~~IR~qaik~Lp~~ck~--------~~i~ 99 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKH-----FPELADSAI----NAQLDLCED-EDVSIRRQAIKELPQFATG--------ENLP 99 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGG-----CGGGHHHHH----HHHHHHHTC-SSHHHHHHHHHHGGGGCCT--------TCHH
T ss_pred cCCCHHHHHHHHHHHHHHHhh-----ChhhHHHHH----HHHHHHHhc-ccHHHHHHHHHhhHHHhhh--------hhhh
Confidence 334678889999999888653 444444433 347788888 7777888755555544422 33 3
Q ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhh
Q psy15255 86 EFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 86 eLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~ 165 (199)
-+... |.++++ .+++.-+..+-.++..+....+ -..|-..+.+.. +++..+|+-++.-+..-+-.+
T Consensus 100 kiaDv-----L~QlLq-tdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~-~~~e~~Rer~lkFi~~kl~~l 165 (507)
T 3u0r_A 100 RVADI-----LTQLLQ-TDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQIL-QGEDIVRERAIKFLSTKLKTL 165 (507)
T ss_dssp HHHHH-----HHHHTT-CCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHGGGS
T ss_pred hHHHH-----HHHHHh-ccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHc-ccchHHHHHHHHHHHHHHhhc
Confidence 34443 667888 5555555554456666665332 233444444433 357889988887775554333
Q ss_pred hhhh-H-HHHHHHHHHHHHhhCC
Q psy15255 166 GNQE-S-TYLVVIKQMLQQCLLP 186 (199)
Q Consensus 166 ~~~l-~-~~~~~l~~~l~~~l~d 186 (199)
+..+ . .--+.|..-+...++|
T Consensus 166 ~~~~l~~E~E~~i~~~ikK~L~D 188 (507)
T 3u0r_A 166 PDEVLTKEVEELILTESKKVLED 188 (507)
T ss_dssp CTTTSCHHHHHHHHHHHHHHTTS
T ss_pred chhhccHHHHHHHHHHHHHHhcc
Confidence 3331 1 1123344444445554
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=7 Score=32.32 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
..+-..+++.-.+ ++..||+.++..+++..+... ..=+.+++. |..++. ++++.|.+++..+.+.+-.
T Consensus 62 ~~fl~~il~f~~d-~~~~vRk~~a~FieEa~~~~~-----el~~~~l~~-----L~~LL~-d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 62 DNFLDEIIAFQAD-KSIEVRKFVIGFIEEACKRDI-----ELLLKLIAN-----LNMLLR-DENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp GGGHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHH-----HHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-----HHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 3344455555555 789999999999999987532 222444554 556666 7888888887777766654
Q ss_pred HhHh----hhc-----cCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 122 NLID----DAG-----NNLWPE---FLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 122 ~~~~----~~~-----~~~~~~---ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
..+. ... ...|.. +...++....+.+..+|..+++.+..++
T Consensus 130 l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 130 VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 3332 111 145754 6677777777889999999999887766
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=88.07 E-value=1.4 Score=37.61 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChHH--HHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWPE--FLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++.+---||.-+++++...+. |...... ....+++++.++|+.||..|+.++.+++-
T Consensus 417 ~d~~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4566677789999999987764 2333333 57788999999999999999999999874
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.56 E-value=1.8 Score=33.26 Aligned_cols=62 Identities=13% Similarity=-0.087 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 135 FLQFLFQCANSDNT--TLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 135 ll~~l~~~~~~~~~--~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
-+|.+.+.++++++ .++..|..++..++..-++.-... ....++.+...+.++ +++++..|+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa 73 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVC 73 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHH
Confidence 46777888888877 888888888888775433221111 123356777788887 899998876
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.33 E-value=12 Score=30.34 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVV 175 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~ 175 (199)
|+..+. +.+.+....++.++..+..+.-.-.+.-..++++.-+...+.+.+..|-..|+.++-.++++.+....-....
T Consensus 165 Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~a 243 (339)
T 3dad_A 165 LIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRA 243 (339)
T ss_dssp HHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHH-hcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHH
Confidence 555665 6677777777777777665432111222368899999999998899999999999999998875432111111
Q ss_pred H-----------HHHHHHhhC---CCCCHHHhhhhh
Q psy15255 176 I-----------KQMLQQCLL---PPNPYSVQALQL 197 (199)
Q Consensus 176 l-----------~~~l~~~l~---d~~~~~Vr~~A~ 197 (199)
+ ...+...++ +. |.+++..|+
T Consensus 244 v~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~am 278 (339)
T 3dad_A 244 VNSVASTTGAPPWANLVSILEEKNGA-DPELLVYTV 278 (339)
T ss_dssp HHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHHHH
T ss_pred HHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHHHH
Confidence 1 234445665 44 888887664
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=85.12 E-value=20 Score=31.76 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHH-HHH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 133 PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST-YLV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 133 ~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~-~~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
++-++.|+.++++.+-.+|..+++++..++...+..... ..+ .=++.+...+.|+ .+-+|-+|+
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneal 187 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGV 187 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHH
Confidence 466889999999999999999999999999887664332 221 2355667788887 777887765
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=84.73 E-value=1.1 Score=41.79 Aligned_cols=92 Identities=5% Similarity=0.022 Sum_probs=62.1
Q ss_pred HHHHHhhccc-HHHHHHHHHHHHHHHHHh-HhhhccCChHHHHHHHHHHhcC------------CCHHHHHHHHHHHHhh
Q psy15255 96 IILLLQTCDN-DNIRRKICDAAAEVARNL-IDDAGNNLWPEFLQFLFQCANS------------DNTTLKESALRLFTSV 161 (199)
Q Consensus 96 ll~~l~~~~~-~~vr~~a~~~i~~i~~~~-~~~~~~~~~~~ll~~l~~~~~~------------~~~~vr~~a~~~l~~i 161 (199)
++.++. ++. ..||..|+.+++.+.... .. ....+++..+.+.+.. .+...|.+|+-.|+++
T Consensus 848 v~~~L~-D~q~~EVRe~Aa~tLsgll~c~~~~----~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 848 VVSNLY-NEQFVEVRVRAASILSDIVHNWKEE----QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HTTTTT-CSSCHHHHHHHHHHHHHHHHSCCSH----HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHhc-CCccHHHHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 444555 778 899999999998887543 21 1223444444444422 1125778999999999
Q ss_pred hHhhhhhh--HHHHHHHHHHHHHhhCCCCCHHHhh
Q psy15255 162 PEIFGNQE--STYLVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 162 ~e~~~~~l--~~~~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
+..++-.. .++++.++..+.....|| .+ |+.
T Consensus 923 V~a~Py~vP~P~w~P~~l~~La~~~~~~-~~-i~~ 955 (997)
T 1vsy_5 923 ISAFPYVFPLPPWIPKNLSNLSSWARTS-GM-TGN 955 (997)
T ss_dssp HTTCSCCSSCCTHHHHHHHHHHTTSSSC-SS-HHH
T ss_pred HhhCCCCCCCCcccHHHHHHHHHHhCCC-Cc-hHH
Confidence 99888766 578888888887777776 54 543
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=84.44 E-value=7.6 Score=36.39 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy15255 40 DQNNLKSQIILLLQTC---DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAA 116 (199)
Q Consensus 40 ~~~~ik~~ll~~L~~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i 116 (199)
+++.++ .+...+.+. +++.+|+.+.-..|.+++........+ -+++++. +...+.+.+. ..+..-+..++.++
T Consensus 389 t~e~l~-~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-~~~~v~~-i~~~l~~~~~-~~~~~~~~~~LkaL 464 (1056)
T 1lsh_A 389 TRESLS-YARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-PDELLQP-LHDLLSQSSD-RAKEEEIVLALKAL 464 (1056)
T ss_dssp CHHHHH-HHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-CGGGTHH-HHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-CHHHHHH-HHHHHHHHHh-cCChHHHHHHHHHh
Confidence 344444 344555442 467789988889999998877532221 1233332 2223445555 33333333333444
Q ss_pred HHHHHHhHhhhccCChHHHHHHHHHHhc-------CCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCC
Q psy15255 117 AEVARNLIDDAGNNLWPEFLQFLFQCAN-------SDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNP 189 (199)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~ 189 (199)
+.+. -|..++.|..++. +....+|.+|+.+|..+....++. ..+.+.+++.+- + ++
T Consensus 465 GN~g-----------~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---v~~il~~i~~n~--~-e~ 527 (1056)
T 1lsh_A 465 GNAG-----------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---VQEIVLPIFLNV--A-IK 527 (1056)
T ss_dssp HHHT-----------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---HHHHHHHHHHCT--T-SC
T ss_pred hccC-----------ChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---HHHHHHHHhcCC--C-CC
Confidence 3321 1344555555553 225678999999999988654332 223444444432 3 48
Q ss_pred HHHhhhhh
Q psy15255 190 YSVQALQL 197 (199)
Q Consensus 190 ~~Vr~~A~ 197 (199)
++||.+|+
T Consensus 528 ~EvRiaA~ 535 (1056)
T 1lsh_A 528 SELRIRSC 535 (1056)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 88999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 199 | ||||
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-11 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-11 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-09 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 1e-09 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 1e-09 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 2e-06 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 6e-04 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-05 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 8e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 0.002 |
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 2e-11
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 16/156 (10%)
Query: 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL-----------Q 89
+N L Q ++N + + AA +N + + +F +
Sbjct: 34 NDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAK 93
Query: 90 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNT- 148
N +K+ + L + I A +A + + WPE ++ + ++
Sbjct: 94 NQIKTNALTALVS-IEPRIANAAAQLIAAIADI---ELPHGAWPELMKIMVDNTGAEQPE 149
Query: 149 TLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCL 184
+K ++L + E Q + +L +
Sbjct: 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIV 185
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 3e-11
Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 15/147 (10%)
Query: 49 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNI 108
+L +++ R + + +N + N + + +KS+ + + + I
Sbjct: 51 VLTKLKSEDEPTRS----LSGLILKNNVKAHFQNFPNG-VTDFIKSECLNNIGD-SSPLI 104
Query: 109 RRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPE----- 163
R + +A WP+ L L +S++ E A + E
Sbjct: 105 RATVGILITTIASKG----ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 160
Query: 164 IFGNQESTYLVVIKQMLQQCLLPPNPY 190
+ + L ++ Q +P
Sbjct: 161 LDSDVLDRPLNIMIPKFLQFFKHSSPK 187
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 4e-09
Identities = 21/200 (10%), Positives = 55/200 (27%), Gaps = 27/200 (13%)
Query: 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRR 62
+ + R +S ++L+ + + +KS+ + + + IR
Sbjct: 52 LTKLKSEDEPTRSLSGLILKNNVKAH----FQNFPNGVTDFIKSECLNNIGD-SSPLIRA 106
Query: 63 KICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 122
+ +A WP+ L L D+++ C+ A +
Sbjct: 107 TVGILITTIASKG----ELQNWPDLLPK--------LCSLLDSEDYN--TCEGAFGALQK 152
Query: 123 LIDDAGNNLWPEF--------LQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLV 174
+ +D+ L + + Q + ++ A+ ++
Sbjct: 153 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID 212
Query: 175 VIKQMLQQCLLPPNPYSVQA 194
+ L P +
Sbjct: 213 SFTENLFALAGDEEPEVRKN 232
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 1e-09
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 18/169 (10%)
Query: 41 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL----------QN 90
NL + ++ L + N + AA +N + ++ ++ +
Sbjct: 30 VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89
Query: 91 NLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTT- 149
+K+ ++ L A +A + N WPE + L + N+T
Sbjct: 90 EVKNYVLHTLG--TETYRPSSASQCVAGIACA---EIPVNQWPELIPQLVANVTNPNSTE 144
Query: 150 -LKESALRLFTSV-PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQ 196
+KES L + +I Q I + Q + P + L
Sbjct: 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 1e-09
Identities = 17/193 (8%), Positives = 61/193 (31%), Gaps = 16/193 (8%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQ 53
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG 100
Query: 54 TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKIC 113
A +A + N WPE + + + ++++
Sbjct: 101 --TETYRPSSASQCVAGIACA---EIPVNQWPELIPQLVA----NVTNPNSTEHMKESTL 151
Query: 114 DAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYL 173
+A + +++ + + E L + Q + + + + + +
Sbjct: 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211
Query: 174 VVIKQMLQQCLLP 186
+ + Q +
Sbjct: 212 ESERHFIMQVVCE 224
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (107), Expect = 2e-06
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 48 IILLLQTCDNDNIRRKICDAAAEVARNLI-----DDAGNNLWPEFLQNNLKSQIILLLQT 102
+ LL + N+ A A +N I D+ GN+L P +K +I+ L+ +
Sbjct: 37 GLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS 96
Query: 103 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162
N N++ +I +A + +A + + WP L L ++D+ + L + S+
Sbjct: 97 LPN-NLQVQIGEAISSIADS----DFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151
Query: 163 EIF 165
+ +
Sbjct: 152 KRW 154
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (87), Expect = 6e-04
Identities = 26/193 (13%), Positives = 61/193 (31%), Gaps = 13/193 (6%)
Query: 1 MNIIQDAGRSVEERQMSAVLLRKIFSTDF--IEIYSKLAVNDQNNLKSQIILLLQTCDND 58
+++I + R A+ + + L N+ +K +I+ L+ + N
Sbjct: 41 LHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPN- 99
Query: 59 NIRRKICDAAAEVARNLIDDAGNNLWPEFLQ-------NNLKSQIILLLQTCDNDNIRRK 111
N++ +I +A + +A + D L + K + + R
Sbjct: 100 NLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF--KRWRPL 157
Query: 112 ICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQEST 171
+ L+ D + L+ + + + N K S LF + +
Sbjct: 158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITA-NENNKASLNILFDVLLVLIKLYYDF 216
Query: 172 YLVVIKQMLQQCL 184
I + + +
Sbjct: 217 NCQDIPEFFEDNI 229
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 4e-05
Identities = 21/197 (10%), Positives = 59/197 (29%), Gaps = 18/197 (9%)
Query: 2 NIIQDAGRSVEERQMSAVLLRKIFST-------DFIEIYSKLAVNDQNNLKSQIILLLQT 54
++ + G S R + + ++ ++ + + + + N + +K+ ++ L
Sbjct: 41 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG- 99
Query: 55 CDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICD 114
A +A I L N+ + ++++ +
Sbjct: 100 -TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-------NSTEHMKESTLE 151
Query: 115 AAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESALRLFTSVPEIFGNQESTY 172
A + +++ + + E L + Q + + +K +A + E
Sbjct: 152 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE 211
Query: 173 LVVIKQMLQQCLLPPNP 189
M C P
Sbjct: 212 SERHFIMQVVCEATQCP 228
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 8e-04
Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 17/184 (9%)
Query: 20 LLRKIFSTDFIEIYS---KLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 76
+L K S D +E+ + L NL + ++ L + N + AA +N +
Sbjct: 5 ILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSL 64
Query: 77 -------DDAGNNLWPEFLQNNLKSQIILLLQTC-DNDNIRRKICDAAAEVARNLIDDAG 128
W N + +LQT A +A +
Sbjct: 65 TSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACA---EIP 121
Query: 129 NNLWPEFLQFLFQCANSDNTT--LKESALRLFTSVPE-IFGNQESTYLVVIKQMLQQCLL 185
N WPE + L + N+T +KES L + + I Q I + Q +
Sbjct: 122 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 181
Query: 186 PPNP 189
P
Sbjct: 182 KEEP 185
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.9 bits (81), Expect = 0.002
Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 2/161 (1%)
Query: 39 NDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIIL 98
++Q + + +++ +++N+ ++ A + AR L+ ++ L + +
Sbjct: 6 SNQGTVNWSVEDIVKGINSNNLESQL--QATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63
Query: 99 LLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLF 158
L D I+ + A +A + + + S + + E A+
Sbjct: 64 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 123
Query: 159 TSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199
++ + LL S A
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 164
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 199 | |||
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.79 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.68 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.38 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.38 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.16 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.09 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.78 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.69 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.68 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 98.63 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.54 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.44 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.41 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.37 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.29 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.24 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.04 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.9 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.9 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.88 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.85 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.74 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.13 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 96.44 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 94.93 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.66 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.4 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.01 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 89.17 | |
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 82.08 |
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=3.3e-18 Score=150.58 Aligned_cols=187 Identities=15% Similarity=0.162 Sum_probs=150.8
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh--------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF--------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 73 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~--------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~ 73 (199)
+++.+.+.+..+|++|+++|||.+..+| ...|..++++.|+.||+.+++++.+ +++.||+++|.+++.+++
T Consensus 46 ~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~i~~ 124 (861)
T d2bpta1 46 QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIAD 124 (861)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Confidence 4677777889999999999999997764 2345789999999999999999998 889999999999999999
Q ss_pred hhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh--hccCChHHHHHHHHHHhc--CCCHH
Q psy15255 74 NLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD--AGNNLWPEFLQFLFQCAN--SDNTT 149 (199)
Q Consensus 74 ~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~--~~~~~~~~ll~~l~~~~~--~~~~~ 149 (199)
..++ .+.||+|++. |+..++.+.+..+|..++.++..++....+. ........+++.+++.+. +++..
T Consensus 125 ~~~p---~~~wpeli~~-----L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~ 196 (861)
T d2bpta1 125 IELP---HGAWPELMKI-----MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA 196 (861)
T ss_dssp HHGG---GTCCHHHHHH-----HHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred HhCC---cCchHHHHHH-----HHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 9887 5789999997 5667775666778888889988877544321 112455667777777765 34789
Q ss_pred HHHHHHHHHHhhhHhhhhhh--HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 150 LKESALRLFTSVPEIFGNQE--STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 150 vr~~a~~~l~~i~e~~~~~l--~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+|..|+.+++.++..+...+ ....+.+++.+..+++++ ++++|..|++
T Consensus 197 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 246 (861)
T d2bpta1 197 VRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFG 246 (861)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC-CHHHHHHHHH
Confidence 99999999999998887664 345677888889999997 9999988864
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=8.6e-18 Score=148.53 Aligned_cols=186 Identities=14% Similarity=0.213 Sum_probs=152.1
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh-------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF-------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~-------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
+++.+.+.+..+|++|+++|||.+..+| ...|..++++.|+.||+.++++|.+ ++ .+|+++|.+++.+++.
T Consensus 42 ~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~-~~-~~~~~~a~~i~~i~~~ 119 (876)
T d1qgra_ 42 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGT-ET-YRPSSASQCVAGIACA 119 (876)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTT-CC-SSSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHHHHHH
Confidence 4677777889999999999999997654 4679999999999999999999998 44 3677899999999999
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLK 151 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~-~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr 151 (199)
.++ .+.||++++. ++..+. .+.+..+|..++.++..++....++....+.+.+++.+++.+.++ +..+|
T Consensus 120 ~~p---~~~Wpeli~~-----L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~ 191 (876)
T d1qgra_ 120 EIP---VNQWPELIPQ-----LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 191 (876)
T ss_dssp HGG---GTCCTTHHHH-----HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHH
T ss_pred HCC---ccccHHHHHH-----HHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHH
Confidence 877 5789999998 556665 234477888899999988765544344567889999999999754 67899
Q ss_pred HHHHHHHHhhhHhhhhhh--HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 152 ESALRLFTSVPEIFGNQE--STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~l--~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..|+.++..+.+...... ....+.+++.+..+++++ ++++|..|++
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~v~~~~~~ 239 (876)
T d1qgra_ 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQ 239 (876)
T ss_dssp HHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 999999999988776553 455677889999999998 9999998875
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.3e-21 Score=172.44 Aligned_cols=180 Identities=13% Similarity=0.160 Sum_probs=146.5
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
+.+..+|++||++|||.++.+ |..++++.+++||+.++++|.+ +++.||+++|++++.+++.. +.+.||++
T Consensus 57 ~~~~~~R~~A~i~Lkn~i~~~----w~~~~~~~~~~Ik~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~----~~~~Wpel 127 (888)
T d1qbkb_ 57 SEDEPTRSLSGLILKNNVKAH----FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKG----ELQNWPDL 127 (888)
T ss_dssp CSTTTHHHHTTGGGGGTHHHH----TTCSTTTCCHHHHHHHTTGGGC-CCSSTTTTTTTTTHHHHTTT----SSCSSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHh----hccCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHh----CccchHHH
Confidence 356789999999999999988 9999999999999999999998 88999999999999999743 35779999
Q ss_pred HHHHHHH-----------------------------------------HHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 88 LQNNLKS-----------------------------------------QIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 88 l~~~ik~-----------------------------------------~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
++.+++. .++++++ ++++.+|..++.++..+..... .
T Consensus 128 l~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~-~~~~~vr~~al~~l~~~~~~~~-~ 205 (888)
T d1qbkb_ 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRT-Q 205 (888)
T ss_dssp STTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGG-SSSSCSSSTTTHHHHGGGGCCC-S
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhh-H
Confidence 8764421 1334444 5556677776666655432211 1
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
......+.+++.+++...|+++.+|..++++++.+++..++.+.+|++.+++++..+++|+ +++||..|++|
T Consensus 206 ~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~-~e~v~~~a~ef 277 (888)
T d1qbkb_ 206 ALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEF 277 (888)
T ss_dssp TTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 2235668899999999999999999999999999999988888899999999888999997 99999999976
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2e-15 Score=123.83 Aligned_cols=186 Identities=14% Similarity=0.205 Sum_probs=148.5
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh-------HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHh
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF-------IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARN 74 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~-------~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~ 74 (199)
+++.+.+.+..+|++|+++|||.++..+ ...|..++++.+..+|..+++.+.+ +++ +|+.++..++.++..
T Consensus 41 ~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~-~~~-~~~~~~~~~~~i~~~ 118 (458)
T d1ibrb_ 41 RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT-ETY-RPSSASQCVAGIACA 118 (458)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTC-CCS-SSCSHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCC-CcH-HHHHHHHHHHHHHHH
Confidence 4567776789999999999999987643 5679999999999999999999998 444 455678899999988
Q ss_pred hcCcCCCCChHHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcC--CCHHHH
Q psy15255 75 LIDDAGNNLWPEFLQNNLKSQIILLLQ-TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANS--DNTTLK 151 (199)
Q Consensus 75 ~l~~~~~~~WpeLl~~~ik~~ll~~l~-~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vr 151 (199)
.++ .+.||++++. ++..+. ...+...+..++.++..+.....+.....+.+.+++.+++.+.+ ++..+|
T Consensus 119 ~~~---~~~~~~~~~~-----l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~ 190 (458)
T d1ibrb_ 119 EIP---VNQWPELIPQ-----LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 190 (458)
T ss_dssp HGG---GTCCTTHHHH-----HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred hCC---cccCcchhHH-----HHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHH
Confidence 766 5789999987 555665 23456778888888888776554433456788999999999975 467899
Q ss_pred HHHHHHHHhhhHhhhhhh--HHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 152 ESALRLFTSVPEIFGNQE--STYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 152 ~~a~~~l~~i~e~~~~~l--~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
..|+.+++.+........ ......+.+++...++++ +++++..+++
T Consensus 191 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 238 (458)
T d1ibrb_ 191 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQ 238 (458)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCC-CHHHHHHHHH
Confidence 999999999998776543 455667888888899997 9999988764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.5e-12 Score=109.73 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=125.2
Q ss_pred HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHH
Q psy15255 30 IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIR 109 (199)
Q Consensus 30 ~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr 109 (199)
...|.+.++..+..+...+.+.+.| +++.||+.++..++.+++..-. ...|+++++. +..++. ++++.||
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~l~~D-~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~-----l~~l~~-d~~~~vr 220 (588)
T d1b3ua_ 151 SVCYPRVSSAVKAELRQYFRNLCSD-DTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPM-----FSNLAS-DEQDSVR 220 (588)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHH-----HHHHHT-CSCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHH-----HHHHhc-CCchhhH
Confidence 4567788888999999999999998 9999999999999999986522 4557777774 444555 8899999
Q ss_pred HHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCC
Q psy15255 110 RKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNP 189 (199)
Q Consensus 110 ~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~ 189 (199)
..+++++..++....+ ......++|.+.++++|+++.+|..++++++.++..++.+... ..+.+.+...+.|+ +
T Consensus 221 ~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~-~ 294 (588)
T d1b3ua_ 221 LLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDC-E 294 (588)
T ss_dssp TTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH--HTHHHHHHHHHTCS-S
T ss_pred HHHHHHHHHhhccCCH---HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh--hhhhHHHHHHHhcc-c
Confidence 9999999998876543 2345678999999999999999999999999999888766432 56788888999998 9
Q ss_pred HHHhhhhhc
Q psy15255 190 YSVQALQLK 198 (199)
Q Consensus 190 ~~Vr~~A~~ 198 (199)
++||..|++
T Consensus 295 ~~vr~~a~~ 303 (588)
T d1b3ua_ 295 AEVRAAASH 303 (588)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999988864
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=7.1e-12 Score=111.96 Aligned_cols=86 Identities=17% Similarity=0.338 Sum_probs=74.0
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcchhh--HhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC
Q psy15255 2 NIIQDAGRSVEERQMSAVLLRKIFSTDF--IEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA 79 (199)
Q Consensus 2 ~~~~~~~~~~~~R~~a~vlLr~~~~~~~--~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~ 79 (199)
+++.+.+.+..+|++|++.|||.++.+| ...|..++++.|+.||+.++++|.+ +++.+|+++|.+++.+++...+
T Consensus 42 ~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~-~~~~ir~~l~~~i~~I~~~d~p-- 118 (959)
T d1wa5c_ 42 HVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS-LPNNLQVQIGEAISSIADSDFP-- 118 (959)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHST--
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhCc--
Confidence 4677787889999999999999999884 2233459999999999999999987 7889999999999999998754
Q ss_pred CCCChHHHHHHHH
Q psy15255 80 GNNLWPEFLQNNL 92 (199)
Q Consensus 80 ~~~~WpeLl~~~i 92 (199)
+.||++++.++
T Consensus 119 --~~Wp~ll~~l~ 129 (959)
T d1wa5c_ 119 --DRWPTLLSDLA 129 (959)
T ss_dssp --TTCTTHHHHHH
T ss_pred --cccHHHHHHHH
Confidence 67999999854
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=4.4e-10 Score=97.96 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCCC-----
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAGN----- 81 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~~----- 81 (199)
++|+.+|..|---|++.. .+....+-..+++.+.+++ +..+|. .++.++|+.+...+.
T Consensus 16 s~d~~~r~~Ae~~L~~~~------------~~~~~~~~~~l~~il~~~~~~~~~r~----~A~i~lkn~i~~~~~~~~~~ 79 (861)
T d2bpta1 16 SPDQNIRLTSETQLKKLS------------NDNFLQFAGLSSQVLIDENTKLEGRI----LAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp CSSHHHHHHHHHHHHHHH------------HHCHHHHHHHHHHHHTCTTSCHHHHH----HHHHHHHTTTCCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------------hcCchHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHHhhcccchhhhh
Confidence 356667766666555443 2233344557888888754 446666 567788888764221
Q ss_pred --CCh-HHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC-CHHHHHHH
Q psy15255 82 --NLW-PEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD-NTTLKESA 154 (199)
Q Consensus 82 --~~W-peL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vr~~a 154 (199)
..| +.+ .+..+|+.++.++. ++++.+|+.++.+++.|+....+ .+.||++++.+++.++++ +..+|.+|
T Consensus 80 ~~~~~~~~i~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~i~~~~~p---~~~wpeli~~L~~~~~s~~~~~~~~~a 155 (861)
T d2bpta1 80 FAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELP---HGAWPELMKIMVDNTGAEQPENVKRAS 155 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGG---GTCCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred HHhhhHhcCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCC---cCchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 112 222 34567888999998 78999999999999999987654 468999999999999865 56789999
Q ss_pred HHHHHhhhHhhhhhh---HHHHHHHHHHHHHhhCC-CCCHHHhhhhhc
Q psy15255 155 LRLFTSVPEIFGNQE---STYLVVIKQMLQQCLLP-PNPYSVQALQLK 198 (199)
Q Consensus 155 ~~~l~~i~e~~~~~l---~~~~~~l~~~l~~~l~d-~~~~~Vr~~A~~ 198 (199)
+.+|+.+++..+..+ .++...+...+.+.+.+ ..+.+||..|++
T Consensus 156 l~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~ 203 (861)
T d2bpta1 156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALN 203 (861)
T ss_dssp HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 999999998877653 33344444444444433 237889887753
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=2.4e-09 Score=90.91 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh--HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEV 119 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W--peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i 119 (199)
..+...++.++.+ +...||..++.+++.+++.. ...| +.+++. +..++. +++..+|..++.++..+
T Consensus 440 ~~l~~~l~~~l~D-~~~~VR~~A~~~L~~l~~~~-----~~~~~~~~i~~~-----l~~~~~-~~~~~~R~~~~~~l~~l 507 (588)
T d1b3ua_ 440 EKLNSLCMAWLVD-HVYAIREAATSNLKKLVEKF-----GKEWAHATIIPK-----VLAMSG-DPNYLHRMTTLFCINVL 507 (588)
T ss_dssp HHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHH-----CHHHHHHHTHHH-----HHHTTT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHh-----CcHHHHHHHHHH-----HHHHhc-CCCHHHHHHHHHHHHHH
Confidence 4667778888888 88999999999999998776 2234 233443 444555 78889999999999988
Q ss_pred HHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 120 ARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+.....+ ...++++|.+.+++.|+.+.||.+++++++.+...+++. .+...+.+.+...++|+ |.+||..|.+
T Consensus 508 ~~~~~~~---~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~L~~D~-d~dVr~~A~~ 580 (588)
T d1b3ua_ 508 SEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQ-DVDVKYFAQE 580 (588)
T ss_dssp HHHHHHH---HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCS-SHHHHHHHHH
T ss_pred HHHcChH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH--hHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 8766542 245789999999999999999999999999998887654 34467788888888897 9999988753
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.2e-09 Score=95.63 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHhhcCcCC------
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDN-DNIRRKICDAAAEVARNLIDDAG------ 80 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~-~~vR~~~~~~ia~la~~~l~~~~------ 80 (199)
++|.+.|+.|---|+.....+ ....-..|++.+.++.. ..+|. .++.++|+.+...+
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~~------------~~~f~~~L~~i~~~~~~~~~iR~----~A~i~lKn~i~~~~~~~~~~ 75 (876)
T d1qgra_ 12 SPDRLELEAAQKFLERAAVEN------------LPTFLVELSRVLANPGNSQVARV----AAGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHCTTSCHHHHH----HHHHHHHHHHCCSSHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhcC------------hhHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHhhccccchhhh
Confidence 356677777766666554332 22334457777777543 45666 68888888876432
Q ss_pred -CCChHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC--CHHHHHHH
Q psy15255 81 -NNLWPEF---LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD--NTTLKESA 154 (199)
Q Consensus 81 -~~~WpeL---l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vr~~a 154 (199)
...|..+ .+..+|+.++.++. +++ .+++.++.+++.|+....+ .+.||+++|.+++.+.++ +..+|+++
T Consensus 76 ~~~~~~~i~~~~k~~ik~~ll~~l~-~~~-~~~~~~a~~i~~i~~~~~p---~~~Wpeli~~L~~~l~~~~~~~~~~~~~ 150 (876)
T d1qgra_ 76 YQQRWLAIDANARREVKNYVLHTLG-TET-YRPSSASQCVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTT-TCC-SSSCHHHHHHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHHHHHHHCC---ccccHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 1234333 56678889999998 444 4566788999999887553 468999999999999765 57799999
Q ss_pred HHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCC-CCHHHhhhhhc
Q psy15255 155 LRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPP-NPYSVQALQLK 198 (199)
Q Consensus 155 ~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~-~~~~Vr~~A~~ 198 (199)
+.+++.+++.+..+ +.++.+.+.+.+...+.++ .+.+||..|++
T Consensus 151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~ 196 (876)
T d1qgra_ 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (876)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHH
Confidence 99999999876544 6778888888888888654 25678887764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=5.8e-08 Score=78.43 Aligned_cols=179 Identities=16% Similarity=0.076 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc------C---
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD------A--- 79 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~------~--- 79 (199)
.++.+|..+.-.|.+.+... +..+.+.....+-..+...+.+ ++..+|..+......++...... .
T Consensus 228 ~~~~~~~~~~~~l~~i~~~~----~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 302 (458)
T d1ibrb_ 228 PDTRVRVAALQNLVKIMSLY----YQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 302 (458)
T ss_dssp SSHHHHHHHHHHHHHHHHHC----GGGCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred CCHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 46677777776666665443 2223222222233334555566 77788888888887776554210 0
Q ss_pred ---C----CCChHHHHHHHHHHHHHHHHh------hcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCC
Q psy15255 80 ---G----NNLWPEFLQNNLKSQIILLLQ------TCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSD 146 (199)
Q Consensus 80 ---~----~~~WpeLl~~~ik~~ll~~l~------~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~ 146 (199)
. .......++.++ ..+...+. .+.+..+|..+..++..++.... ...++.+++.+.+.++|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~l~~~i~~~l~s~ 377 (458)
T d1ibrb_ 303 GRPPEHTSKFYAKGALQYLV-PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----DDIVPHVLPFIKEHIKNP 377 (458)
T ss_dssp SSCSSCCCCCHHHHHHHHHH-HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT----TTHHHHHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHHHHHHHHh-hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc----HhhhhHHHHHHHHHhcCC
Confidence 0 011111122111 11222221 12334588888888888776543 346899999999999999
Q ss_pred CHHHHHHHHHHHHhhhHhhhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 147 NTTLKESALRLFTSVPEIFGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 147 ~~~vr~~a~~~l~~i~e~~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+|.+|++|+.+|+.+++...++ +.++.+.+++.+..+++|+ ++.||.+|+.
T Consensus 378 ~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~-~~~VR~~a~~ 429 (458)
T d1ibrb_ 378 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAW 429 (458)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 9999999999999999865433 5778888999999999998 9999999874
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4.9e-08 Score=88.78 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH
Q psy15255 8 GRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF 87 (199)
Q Consensus 8 ~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL 87 (199)
++|+..|.||.--|.+.++.+ +-+++++....+...++++|.| +++.||..+..+++.+++.. + ...++++
T Consensus 14 ~~D~d~R~ma~~dl~~~l~~~----~~~~~~~~~~~i~~~ll~~L~D-~~~~Vq~~A~k~l~~l~~~~-~---~~~~~~l 84 (1207)
T d1u6gc_ 14 SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV-K---EYQVETI 84 (1207)
T ss_dssp CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS-C---HHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhc----ccccChHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhC-c---HhhHHHH
Confidence 478999999998888888776 6677777777789999999999 89999999999999998553 2 2345555
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhh-cc----CChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhh
Q psy15255 88 LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA-GN----NLWPEFLQFLFQCANS-DNTTLKESALRLFTSV 161 (199)
Q Consensus 88 l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~-~~----~~~~~ll~~l~~~~~~-~~~~vr~~a~~~l~~i 161 (199)
++. |+..+. +++...|..++.++..+...++... +. ..++.+++.+.....+ .++.+|..++.+++.+
T Consensus 85 ~~~-----L~~~l~-~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l 158 (1207)
T d1u6gc_ 85 VDT-----LCTNML-SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158 (1207)
T ss_dssp HHH-----HHHHTT-CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHhc-CCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 554 444454 5666778777777776666554311 11 2345677777776664 4889999999999999
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 162 PEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 162 ~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...++..+.++...+.+.+...+.++ ++.||..|+
T Consensus 159 ~~~~g~~l~~~~~~il~~l~~~l~~~-~~~vR~~A~ 193 (1207)
T d1u6gc_ 159 LSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTI 193 (1207)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHH
T ss_pred HHHhhHhhHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99988878888889999999999998 899998875
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=6.9e-08 Score=85.85 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHH
Q psy15255 13 ERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNL 92 (199)
Q Consensus 13 ~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~i 92 (199)
.|..|+..|...... .+++....+...+.+.+.+ ++..+|..+..+.|.++....+. -...-|++++.
T Consensus 373 ~r~~a~~~L~~l~~~--------~~~~il~~~l~~l~~~l~s-~~~~~reaa~~alg~i~eg~~~~-~~~~l~~li~~-- 440 (888)
T d1qbkb_ 373 LRKCSAAALDVLANV--------YRDELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPH-- 440 (888)
T ss_dssp SHHHHHHHSTTTTTT--------CCSSSHHHHHHHHHHTTTS-SSHHHHHHHHHHHHHHTTTSHHH-HTTTHHHHHHH--
T ss_pred HHHHHHHHHhhHhhh--------hHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHhhhhhhhHHHH-hcccchhhhHH--
Confidence 577777776655421 2233445566666677777 78899999888888876432211 12334566665
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH
Q psy15255 93 KSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY 172 (199)
Q Consensus 93 k~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~ 172 (199)
++..+. ++++.||..++.+++.++....+.....+.+.+++.+++.+.|+++.||++|+.+|..+++..++.+.+|
T Consensus 441 ---l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~ 516 (888)
T d1qbkb_ 441 ---LIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 516 (888)
T ss_dssp ---HHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG
T ss_pred ---HHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 566777 8999999999999999887654322223456789999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHhhCCCCCHHHhh
Q psy15255 173 LVVIKQMLQQCLLPPNPYSVQA 194 (199)
Q Consensus 173 ~~~l~~~l~~~l~d~~~~~Vr~ 194 (199)
.+.+.+.+..++++. +.+.+.
T Consensus 517 ~~~il~~l~~~l~~~-~~~~~~ 537 (888)
T d1qbkb_ 517 LAYILDTLVFAFSKY-QHKNLL 537 (888)
T ss_dssp HHHHHHHHHHHTTTC-CHHHHH
T ss_pred HHHHHHHHHHHHhhh-hHHHHH
Confidence 999999999999886 666554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=9e-08 Score=73.68 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhhcch-hhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCCh-HH
Q psy15255 9 RSVEERQMSAVLLRKIFST-DFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PE 86 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~-~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~W-pe 86 (199)
.+.+.|..|...|.++... ++...+.++ ..+-..+..++.+ +++.+|..++.+++.++++.-... ...+ ..
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~-----gg~~~ll~~ll~s-~~~~vr~~A~~~L~~l~~~~~~~~-~~~~~~~ 101 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFCQL-----SGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQ-EQVLGLG 101 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHT-----THHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHH-HHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHc-----CCHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHcC
Confidence 4577888888889998754 433333332 1222223334555 899999999999999996531100 0000 01
Q ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhh
Q psy15255 87 FLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFG 166 (199)
Q Consensus 87 Ll~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~ 166 (199)
.+|. |+.++..++++.+|..++.++..++....+....-.-...++.+.+.+.+++..++..++.++..++...+
T Consensus 102 ~i~~-----Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 176 (264)
T d1xqra1 102 ALRK-----LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 176 (264)
T ss_dssp HHHH-----HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG
T ss_pred chHH-----HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccH
Confidence 1333 66677767788999999999888775433210000112246778888889999999999999999987655
Q ss_pred hhhHHHHH-HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 167 NQESTYLV-VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 167 ~~l~~~~~-~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
+....+.+ ..++.+...+.++ |+++|..|+
T Consensus 177 ~~~~~~~~~~~v~~L~~lL~~~-~~~~~~~a~ 207 (264)
T d1xqra1 177 EHKGTLCSMGMVQQLVALVRTE-HSPFHEHVL 207 (264)
T ss_dssp GGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHcCC-CHHHHHHHH
Confidence 44333332 4567788888997 899998775
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=2.7e-07 Score=81.78 Aligned_cols=139 Identities=18% Similarity=0.257 Sum_probs=102.6
Q ss_pred cccccCCCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHhhcCcCC-
Q psy15255 3 IIQDAGRSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCD-NDNIRRKICDAAAEVARNLIDDAG- 80 (199)
Q Consensus 3 ~~~~~~~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~-~~~vR~~~~~~ia~la~~~l~~~~- 80 (199)
++.++ .++.+|..|---|+..-.. + .+-..|++.+.+.+ +..+|. .++..+|+.+...+
T Consensus 10 ll~~s-~~~~~~k~Ae~~L~~~~~~-------------p-~f~~~L~~i~~~~~~~~~iR~----~A~i~lKn~i~~~W~ 70 (959)
T d1wa5c_ 10 FLAES-VIASTAKTSERNLRQLETQ-------------D-GFGLTLLHVIASTNLPLSTRL----AGALFFKNFIKRKWV 70 (959)
T ss_dssp HHHHT-TSGGGHHHHHHHHHHHHTS-------------T-THHHHHHHHHHCTTSCHHHHH----HHHHHHHHHHHHHSB
T ss_pred HHHHC-CChHHHHHHHHHHHHHHcC-------------C-CHHHHHHHHHhcCCCCHHHHH----HHHHHHHHHHHHhcc
Confidence 34444 5666677776666654221 1 23334677777644 345777 46677777765422
Q ss_pred ----CCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHH
Q psy15255 81 ----NNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALR 156 (199)
Q Consensus 81 ----~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~ 156 (199)
...+|+=.+..||+.++.++. ++++.+|+..+.+++.|+....+ +.||++++.+.+.++++++..+..++.
T Consensus 71 ~~~~~~~i~~e~k~~Ik~~ll~~l~-~~~~~ir~~l~~~i~~I~~~d~p----~~Wp~ll~~l~~~l~s~~~~~~~~~L~ 145 (959)
T d1wa5c_ 71 DENGNHLLPANNVELIKKEIVPLMI-SLPNNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLT 145 (959)
T ss_dssp CSSSCBSSCHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhCc----cccHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 234667788999999999998 78889999999999999986543 689999999999999999999999999
Q ss_pred HHHhhhHhh
Q psy15255 157 LFTSVPEIF 165 (199)
Q Consensus 157 ~l~~i~e~~ 165 (199)
++..+++.+
T Consensus 146 ~l~~i~k~~ 154 (959)
T d1wa5c_ 146 VAHSIFKRW 154 (959)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.1e-07 Score=86.55 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.....|..|...|..... .........+...+++.+.+ ++..||..++.++|.++....+ +.+
T Consensus 827 ~~~~~~~~al~~Lge~~~--------~~~~~~~~~l~~~l~~~l~~-~~~~vr~aAa~aLg~l~~~~~~--------~~l 889 (1207)
T d1u6gc_ 827 STDSIRLLALLSLGEVGH--------HIDLSGQLELKSVILEAFSS-PSEEVKSAASYALGSISVGNLP--------EYL 889 (1207)
T ss_dssp CCHHHHHHHHHHHHHHHH--------HSCCCSCTHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHTHH--------HHH
T ss_pred chHHHHHHHHHHHHHHHH--------hccccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhHH--------HHh
Confidence 345666666555544321 11112223455667888888 8899999999999888754321 222
Q ss_pred HHHHH--------------------------------HHHHHHHh---hcccHHHHHHHHHHHHHHHHHhHhhhccCChH
Q psy15255 89 QNNLK--------------------------------SQIILLLQ---TCDNDNIRRKICDAAAEVARNLIDDAGNNLWP 133 (199)
Q Consensus 89 ~~~ik--------------------------------~~ll~~l~---~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~ 133 (199)
|.+++ ..++..+. .+++..+|..+.+|++.++.. ..+
T Consensus 890 p~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~--------~~~ 961 (1207)
T d1u6gc_ 890 PFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI--------DPE 961 (1207)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS--------SGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc--------CHH
Confidence 21111 01222221 245677888888888877642 335
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 134 EFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 134 ~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.++|.+.+.+.|+++.+|.+++.++..++...+....++...+++.+...++|+ |++||..|+
T Consensus 962 ~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~-~~~vR~~al 1024 (1207)
T d1u6gc_ 962 TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVAL 1024 (1207)
T ss_dssp GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSS-STHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 678999999999999999999999999998877777888888877788899998 999999886
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.44 E-value=4.7e-09 Score=70.67 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHH
Q psy15255 97 ILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTYLVVI 176 (199)
Q Consensus 97 l~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l 176 (199)
+..+. ++++.+|..++.+++.+ .-+..++.+..+++|+++.||..|+.+++.+-. +..
T Consensus 28 ~~~l~-d~~~~vR~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------~~~ 85 (111)
T d1te4a_ 28 LESLS-NEDWRIRGAAAWIIGNF-----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERV 85 (111)
T ss_dssp HHGGG-CSCHHHHHHHHHHHGGG-----------CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHH
T ss_pred HHHHc-CCCHHHHHHHHHHHHhc-----------chhhhHHHHHhhhccchhHHHHHHHHHHHHhCc----------cch
Confidence 34666 88999999887776532 124567888889999999999999999998632 234
Q ss_pred HHHHHHhhCCCCCHHHhhhhhc
Q psy15255 177 KQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 177 ~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.+.+...+.|+ ++.||.+|++
T Consensus 86 ~~~L~~ll~d~-~~~vr~~A~~ 106 (111)
T d1te4a_ 86 RAAMEKLAETG-TGFARKVAVN 106 (111)
T ss_dssp HHHHHHHTTSC-CTHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHH
Confidence 55666788897 9999988863
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3.9e-06 Score=64.18 Aligned_cols=150 Identities=15% Similarity=0.040 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++++|..|+-.|.+....+......- .....-..|+..|.+++++.+|..++.+++.+++..-+ ....+.
T Consensus 71 ~~~~vr~~A~~~L~~l~~~~~~~~~~~----~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~-----~~~~~~ 141 (264)
T d1xqra1 71 GAAGLRWRAAQLIGTCSQNVAAIQEQV----LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA-----GLLQFL 141 (264)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHH----HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchh-----hHHHHH
Confidence 678999999999999886441111100 11234556888888778899999999999999855311 111111
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ 168 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~ 168 (199)
..-.-..|+.++. ++++.++..++.++..++....+....-.....+|.+...+.++++.+|+.|+.++..++...+..
T Consensus 142 ~~~gi~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 220 (264)
T d1xqra1 142 RLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 220 (264)
T ss_dssp HTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HhhhhhHHHHHHh-cCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 1000112556777 788999999999999887654321100011236889999999999999999999999998655433
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=1.3e-05 Score=60.45 Aligned_cols=127 Identities=11% Similarity=-0.013 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 42 NNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 42 ~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
..-...|+++|.+ +++.||..++.+.+.+.. ++.++. ++.++. ++++.+|..++..++.+..
T Consensus 18 ~~~~~~L~~~L~d-~~~~vR~~A~~~L~~~~~-----------~~~~~~-----l~~~l~-d~~~~vr~~a~~aL~~l~~ 79 (276)
T d1oyza_ 18 KLNDDELFRLLDD-HNSLKRISSARVLQLRGG-----------QDAVRL-----AIEFCS-DKNYIRRDIGAFILGQIKI 79 (276)
T ss_dssp TSCHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------HHHHHH-----HHHHHT-CSSHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHhcC-CCHHHHHHHHHHHHhhCC-----------HhHHHH-----HHHHHc-CCCHHHHHHHHHHHHHhcc
Confidence 3344568899998 999999999988876631 333443 445677 8899999998887765321
Q ss_pred HhHhhhccCChHHHHHHHHH-HhcCCCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 122 NLIDDAGNNLWPEFLQFLFQ-CANSDNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 122 ~~~~~~~~~~~~~ll~~l~~-~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
....-+..++.+.. .+.|+++.+|..|+.+++.++..... ....+.+.+...+.|+ ++.||..|+
T Consensus 80 ------~~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~-~~~vr~~a~ 145 (276)
T d1oyza_ 80 ------CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDK-STNVRRATA 145 (276)
T ss_dssp ------CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred ------ccccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCc-chHHHHHHH
Confidence 11223344444444 34688999999999999987754322 2345666777777887 888887665
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=5.4e-06 Score=66.68 Aligned_cols=171 Identities=13% Similarity=0.046 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++++|..|.-.|.++...+.+.... + ....+-..+.+.+.+ +++.++..++.+++.++... ++..
T Consensus 200 ~~~~~~~~a~~~l~~l~~~~~~~~~~-~---~~~~~~~~Lv~ll~~-~~~~~~~~al~~l~~l~~~~---------~~~~ 265 (434)
T d1q1sc_ 200 NDPEVLADSCWAISYLTDGPNERIEM-V---VKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGT---------DEQT 265 (434)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHH-H---HTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSC---------HHHH
T ss_pred cccchhhhHHhhhcccchhhhhhHHH-H---hhcccchhccccccc-chhhhhhchhhhhhhHHhhh---------hHHH
Confidence 56677777777777765433111100 0 111233456677777 88889988888887775321 1111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
..+++ ..+..++. ++++.++..++.++..++....+. ...+ ..+++.+++.+.++++.+|..|+.+++.++
T Consensus 266 ~~~~~~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~ 342 (434)
T d1q1sc_ 266 QKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQ--IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 342 (434)
T ss_dssp HHHHHTTGGGGHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHH--HHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccchHHHhhc-ccchhhhHHHHHHHhhhccccchh--HHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 11111 12455666 788899999999888876432210 0111 236788888899999999999999999998
Q ss_pred Hhhhhhh-HHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 163 EIFGNQE-STY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 163 e~~~~~l-~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...+.+. ... ...+++.+...++++ |++++..++
T Consensus 343 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-d~~~~~~~l 378 (434)
T d1q1sc_ 343 SGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVIL 378 (434)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHHTTSS-CHHHHHHHH
T ss_pred hcCCHHHHHHHHHCCcHHHHHHHhcCC-CHHHHHHHH
Confidence 7755432 111 124567778888887 899887765
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.90 E-value=0.0001 Score=58.85 Aligned_cols=173 Identities=9% Similarity=0.013 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcC----CCCCh
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDA----GNNLW 84 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~----~~~~W 84 (199)
.++.++..|.-.|++....+.+....- ....+-..+.+.|.+ +++.+|..++.+++.++...-+.. ..+..
T Consensus 242 ~~~~~~~~al~~l~~l~~~~~~~~~~~----~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 316 (434)
T d1q1sc_ 242 TELPIVTPALRAIGNIVTGTDEQTQKV----IDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316 (434)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHH----HHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred chhhhhhchhhhhhhHHhhhhHHHHHH----HhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHHHhhhhhH
Confidence 567788888888887765431110000 011223346677776 888999998888888864321100 01222
Q ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh--HHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 85 PEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW--PEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 85 peLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~--~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
|. ++.++. ++++.+|..++.++..++....... .... ..+++.|.++++++++.++..++.++..++
T Consensus 317 ~~---------li~~l~-~~~~~v~~~a~~~l~nl~~~~~~~~-~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll 385 (434)
T d1q1sc_ 317 PF---------LVGVLS-KADFKTQKEAAWAITNYTSGGTVEQ-IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 385 (434)
T ss_dssp HH---------HHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHH-HHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HH---------HHHHHh-ccChHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22 445666 7889999999999988775432110 0000 124788889999999999999999999998
Q ss_pred Hhhhhh--hHHHHH-----HHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 163 EIFGNQ--ESTYLV-----VIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 163 e~~~~~--l~~~~~-----~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
....+. ..++.. .+...+.....+ ++++|+..|.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~-~n~~i~~~a~~ 427 (434)
T d1q1sc_ 386 QAAEKLGETEKLSIMIEECGGLDKIEALQRH-ENESVYKASLN 427 (434)
T ss_dssp HHHHTTTCHHHHHHHHHHTTSHHHHHHHHTC-SSHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHH
Confidence 765422 112222 234455544445 49999988864
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.90 E-value=3.1e-05 Score=51.12 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=63.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhh
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD 126 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~ 126 (199)
.|++.|.+ +++.||..++.++|.+. =++.++. |..++. ++++.||..++.+++.+.
T Consensus 26 ~L~~~l~d-~~~~vR~~a~~~L~~~~-----------~~~~~~~-----L~~~l~-d~~~~VR~~a~~aL~~i~------ 81 (111)
T d1te4a_ 26 PLLESLSN-EDWRIRGAAAWIIGNFQ-----------DERAVEP-----LIKLLE-DDSGFVRSGAARSLEQIG------ 81 (111)
T ss_dssp HHHHGGGC-SCHHHHHHHHHHHGGGC-----------SHHHHHH-----HHHHHH-HCCTHHHHHHHHHHHHHC------
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHhcc-----------hhhhHHH-----HHhhhc-cchhHHHHHHHHHHHHhC------
Confidence 36778888 88999998887776442 1233443 456777 889999999888887542
Q ss_pred hccCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy15255 127 AGNNLWPEFLQFLFQCANSDNTTLKESALRLFT 159 (199)
Q Consensus 127 ~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~ 159 (199)
-+...+.+.++++|+++.+|..|+.+|.
T Consensus 82 -----~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 -----GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp -----SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1567888888999999999999999875
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=0.00059 Score=50.82 Aligned_cols=122 Identities=10% Similarity=-0.012 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|...-+. ..-..+++.+.+ +++.||..++...+.+... ...=+...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~---------------~~~~~l~~~l~d-~~~~vr~~a~~aL~~l~~~------~~~~~~~~ 88 (276)
T d1oyza_ 31 HNSLKRISSARVLQLRGGQ---------------DAVRLAIEFCSD-KNYIRRDIGAFILGQIKIC------KKCEDNVF 88 (276)
T ss_dssp SSHHHHHHHHHHHHHHCCH---------------HHHHHHHHHHTC-SSHHHHHHHHHHHHHSCCC------TTTHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCH---------------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhccc------cccccchH
Confidence 6789999999888765321 123557788888 8899999988887765211 11112222
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 89 QNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 89 ~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
+. ++..+..++++.+|..++..+..+..... ..-+.+++.+...+.|+++.+|..+..+++.+.
T Consensus 89 ~~-----l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~ 152 (276)
T d1oyza_ 89 NI-----LNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 152 (276)
T ss_dssp HH-----HHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred HH-----HHHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc
Confidence 22 22333348999999999999887765321 244788999999999999999999999888764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=3.8e-05 Score=63.26 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHH-----HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCC
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNN-----LKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNL 83 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~-----ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~ 83 (199)
.++++|..|.-.|.|....+ ++.+.. +-..++..+.+ +++.+++.++.++..+.+..-+......
T Consensus 174 ~~~~i~~~a~~~L~nia~~~---------~~~r~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~nl~~~~~~~~~~~~ 243 (503)
T d1wa5b_ 174 GSVEVKEQAIWALGNVAGDS---------TDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSV 243 (503)
T ss_dssp CCHHHHHHHHHHHHHHHTTC---------HHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred CChhHHHHHHHHHHHHhhhh---------HHHHHHHHhhcccccchhhccc-CCHHHHHHHHHHHHHHhcCCccchHHHH
Confidence 46778888888888876433 122222 23446677776 6777888888888877754311100000
Q ss_pred hHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy15255 84 WPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVP 162 (199)
Q Consensus 84 WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~ 162 (199)
=..+++. ++.++. .+++.++..++.++..++....+. ..... ..+++.+..++.++++.++..|+.+++.++
T Consensus 244 ~~~~l~~-----l~~~l~-~~d~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~ 316 (503)
T d1wa5b_ 244 VSQALPT-----LAKLIY-SMDTETLVDACWAISYLSDGPQEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 316 (503)
T ss_dssp HGGGHHH-----HHHHTT-CCCHHHHHHHHHHHHHHHSSCHHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHhc-cccHHHHHHHHHHHHhhccCCchh-hhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHH
Confidence 1122443 455666 678888888888888776422110 00011 236778889999999999999999999998
Q ss_pred HhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 163 EIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 163 e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...+...... ...+++.+..++.++ ++.++..++
T Consensus 317 ~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~ 351 (503)
T d1wa5b_ 317 TGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEAC 351 (503)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHH
Confidence 6544332222 235677788888887 899988775
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=6.9e-05 Score=61.61 Aligned_cols=174 Identities=16% Similarity=0.079 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.++.+|..|+-.|.+....+.+.. .. -....+-..+...|.+ ++..++..++.+++.|+... ++.-
T Consensus 132 ~~~~iq~~a~~~L~ni~~~~~~~~-~~---~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~---------~~~r 197 (503)
T d1wa5b_ 132 QPEMLQLEAAWALTNIASGTSAQT-KV---VVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDS---------TDYR 197 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHH-HH---HHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTC---------HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH-HH---HHhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhh---------HHHH
Confidence 567788878888888765431111 00 1112345567788887 88899999999988887431 2221
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
..+++ ..++.++. +.++.++..++.++..++....+.........++|.+...+.++++.++..++.++..+++.
T Consensus 198 ~~l~~~~~~~~L~~ll~-~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~ 276 (503)
T d1wa5b_ 198 DYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 276 (503)
T ss_dssp HHHHHTTCHHHHHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhcccccchhhcc-cCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC
Confidence 11111 12555666 67778887777777776642211000012345789999999999999999999999999875
Q ss_pred hhhhhHHHH-HHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 165 FGNQESTYL-VVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 165 ~~~~l~~~~-~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
.++...... ..+++.+...+.++ ++.++..|+.
T Consensus 277 ~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~ 310 (503)
T d1wa5b_ 277 PQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR 310 (503)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CchhhhhhhhhhhhhhhhhcccCC-chhhhhhHHH
Confidence 443332222 35566777788886 8888877653
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.0004 Score=57.17 Aligned_cols=173 Identities=10% Similarity=-0.030 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHhhcchhhHhhhhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHH
Q psy15255 9 RSVEERQMSAVLLRKIFSTDFIEIYSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFL 88 (199)
Q Consensus 9 ~~~~~R~~a~vlLr~~~~~~~~~~~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl 88 (199)
.+..+|..|+-.|.+..+.+.....- .. . ..+-..++..|.+.++..++..++.+...+.... +..
T Consensus 29 ~~~~v~~~A~~~l~~l~~~~~~~~~~-~~--~-~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~----------~~~ 94 (529)
T d1jdha_ 29 EDQVVVNKAAVMVHQLSKKEASRHAI-MR--S-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR----------EGL 94 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHH-HT--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH----------HHH
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHH-HH--h-hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc----------hhH
Confidence 56788888888888876543111100 00 1 2345567788988778889998888777775321 111
Q ss_pred HHHHH----HHHHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHh
Q psy15255 89 QNNLK----SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEI 164 (199)
Q Consensus 89 ~~~ik----~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~ 164 (199)
...++ ..|+.++. ++++.++..++.++..++.........-.....+|.+...++++++.++..++.++..++..
T Consensus 95 ~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 173 (529)
T d1jdha_ 95 LAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence 11111 12556777 78999999999999988754321000001234678888999999999999999999988754
Q ss_pred hhhh-hHHHHHHHHHHHHHhhCCCCCHHHhhhh
Q psy15255 165 FGNQ-ESTYLVVIKQMLQQCLLPPNPYSVQALQ 196 (199)
Q Consensus 165 ~~~~-l~~~~~~l~~~l~~~l~d~~~~~Vr~~A 196 (199)
-... ..-.....++.+...+..++++.++..+
T Consensus 174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~ 206 (529)
T d1jdha_ 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHH
Confidence 3222 1111122333444444433355565444
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00034 Score=57.65 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhHh
Q psy15255 46 SQIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLID 125 (199)
Q Consensus 46 ~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~ 125 (199)
..|.+.|.+ +++.+|+.++.+++.+++..-....-..=+++++. ++.++....++.++..++.++..++.....
T Consensus 20 p~L~~lL~~-~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~-----l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~ 93 (529)
T d1jdha_ 20 PELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA-----IVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHH-----HHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 357888888 78899999999999998653110000001334444 556777567788888888888776532211
Q ss_pred hhccCCh-HHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhHHH-HHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 126 DAGNNLW-PEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQESTY-LVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 126 ~~~~~~~-~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~~~-~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
. ..-+ ..-+|.+.+++.++++.+++.|+.+++.++...+..-... ....++.+...++++ +++++..|+
T Consensus 94 ~--~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~ 164 (529)
T d1jdha_ 94 L--LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITT 164 (529)
T ss_dssp H--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred H--HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHH
Confidence 0 0001 1247888888899999999999999999987644321111 234455666788887 889887765
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.0013 Score=51.38 Aligned_cols=105 Identities=8% Similarity=0.049 Sum_probs=71.5
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHhhcCcCCCCChHHH-----HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Q psy15255 47 QIILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPEF-----LQNNLKSQIILLLQTCDNDNIRRKICDAAAEVAR 121 (199)
Q Consensus 47 ~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeL-----l~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~ 121 (199)
.|++.|++ +++.++..++.+++.++... ...+..+ +|. |++++. ++++.+|..++.++..++.
T Consensus 6 ~lv~~L~~-~~~~~~~~a~~~l~~l~~~~-----~~~~~~i~~~g~i~~-----Lv~lL~-~~~~~v~~~a~~aL~~L~~ 73 (457)
T d1xm9a1 6 KAVQYLSS-QDEKYQAIGAYYIQHTCFQD-----ESAKQQVYQLGGICK-----LVDLLR-SPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHS-SCTHHHHHHHHHHHHHTSSC-----SSHHHHHHHTTHHHH-----HHHHTT-SSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCcHHH-----HHHHHC-CCCHHHHHHHHHHHHHHHc
Confidence 57889988 99999999999999887321 2223333 344 556787 8999999999999988863
Q ss_pred HhHhhhccCCh--HHHHHHHHHHhc-CCCHHHHHHHHHHHHhhhHhh
Q psy15255 122 NLIDDAGNNLW--PEFLQFLFQCAN-SDNTTLKESALRLFTSVPEIF 165 (199)
Q Consensus 122 ~~~~~~~~~~~--~~ll~~l~~~~~-~~~~~vr~~a~~~l~~i~e~~ 165 (199)
...+. .... ...++.+.+.+. +.++.+|..|+.++..++...
T Consensus 74 ~~~~~--~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~ 118 (457)
T d1xm9a1 74 RSTTN--KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp SCHHH--HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred CCHHH--HHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh
Confidence 21110 0000 012455556554 568899999999999998654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0055 Score=47.58 Aligned_cols=95 Identities=8% Similarity=-0.048 Sum_probs=62.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHHHhHhhhccCChHH-----HHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhhhH
Q psy15255 96 IILLLQTCDNDNIRRKICDAAAEVARNLIDDAGNNLWPE-----FLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQES 170 (199)
Q Consensus 96 ll~~l~~~~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~~-----ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~l~ 170 (199)
|++++. ++++.++..++.++..++..- ...... -+|.|.+++.++++.+|+.|+.++..++..-++.-.
T Consensus 7 lv~~L~-~~~~~~~~~a~~~l~~l~~~~-----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 7 AVQYLS-SQDEKYQAIGAYYIQHTCFQD-----ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHH-SSCTHHHHHHHHHHHHHTSSC-----SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 556777 899999999999998876311 111222 367888999999999999999999999743222111
Q ss_pred --HHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 171 --TYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 171 --~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
...+.+.. +...+....++++|..|+
T Consensus 81 ~i~~~g~v~~-li~~l~~~~~~~~~~~a~ 108 (457)
T d1xm9a1 81 ETRRQNGIRE-AVSLLRRTGNAEIQKQLT 108 (457)
T ss_dssp HHHHTTCHHH-HHHHHTTCCCHHHHHHHH
T ss_pred HHHHCCChHH-HHHHHhccCcHHHHHHHH
Confidence 11123443 444444333888887765
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.54 Score=36.04 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=91.7
Q ss_pred chhHHHHHHHHHHHHHHhhcCcCC-----CCChHHHHHHHHHH----------------------------------HHH
Q psy15255 57 NDNIRRKICDAAAEVARNLIDDAG-----NNLWPEFLQNNLKS----------------------------------QII 97 (199)
Q Consensus 57 ~~~vR~~~~~~ia~la~~~l~~~~-----~~~WpeLl~~~ik~----------------------------------~ll 97 (199)
+-..|+-++++.+.+.|.-..... -..-|+++..+++. .++
T Consensus 82 ~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~fF 161 (330)
T d1upka_ 82 DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFF 161 (330)
T ss_dssp CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHH
T ss_pred CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHHHH
Confidence 456788888888888887654321 12235666666542 133
Q ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhH---hhhccCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhHhhhhh--hHHH
Q psy15255 98 LLLQTCDNDNIRRKICDAAAEVARNLI---DDAGNNLWPEFLQFLFQCANSDNTTLKESALRLFTSVPEIFGNQ--ESTY 172 (199)
Q Consensus 98 ~~l~~~~~~~vr~~a~~~i~~i~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e~~~~~--l~~~ 172 (199)
..++ .++-.+..-|..+.-++...-. ..++..+++.++..+-+++++++--.|..+++.++.+....... +..|
T Consensus 162 ~yv~-~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Y 240 (330)
T d1upka_ 162 RYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKY 240 (330)
T ss_dssp HHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHH
T ss_pred HHHc-CCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344 4556665555555443332111 12344688999999999999999999999999999998654433 3455
Q ss_pred HH--HHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 173 LV--VIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 173 ~~--~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
.+ .-+.++...+.|+ +..|+.+|+
T Consensus 241 vs~~~nLkl~M~LLrd~-sk~Iq~EAF 266 (330)
T d1upka_ 241 ISKPENLKLMMNLLRDK-SRNIQFEAF 266 (330)
T ss_dssp TTCHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCc-hhhHHHHhh
Confidence 43 3455667789997 899999986
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.66 E-value=0.0034 Score=46.88 Aligned_cols=59 Identities=8% Similarity=-0.020 Sum_probs=32.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh--hhHhhhhh---hH-HHHHHHHHHHHHhhCCCCCHHHhhhhhc
Q psy15255 139 LFQCANSDNTTLKESALRLFTS--VPEIFGNQ---ES-TYLVVIKQMLQQCLLPPNPYSVQALQLK 198 (199)
Q Consensus 139 l~~~~~~~~~~vr~~a~~~l~~--i~e~~~~~---l~-~~~~~l~~~l~~~l~d~~~~~Vr~~A~~ 198 (199)
+..+++|+++.||..+...++. +.....+. .. .-...+..-+...+.|+ |++||..|.+
T Consensus 167 L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~~~~~ll~~L~D~-d~~VR~aA~~ 231 (233)
T d1lrva_ 167 LGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEP-DPEVRLAIAG 231 (233)
T ss_dssp GGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSCHHHHHHCCCC-CHHHHHHHHC
T ss_pred HHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHhccHHHHHHhCCC-CHHHHHHHHH
Confidence 4555667777777777665431 11111111 11 11122333445677897 9999988864
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.40 E-value=0.0077 Score=44.83 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=12.3
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q psy15255 138 FLFQCANSDNTTLKESALRL 157 (199)
Q Consensus 138 ~l~~~~~~~~~~vr~~a~~~ 157 (199)
.+..++.|+++.||.++.+.
T Consensus 190 ~L~~l~~D~d~~VR~aaae~ 209 (233)
T d1lrva_ 190 DLLELLHDPDWTVRLAAVEH 209 (233)
T ss_dssp GGGGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHh
Confidence 34455667777777666543
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.01 E-value=0.85 Score=35.03 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHHHHhcC---CchhHHHHHHHHHHHHHHhhcCcCCCCChHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhH
Q psy15255 48 IILLLQTC---DNDNIRRKICDAAAEVARNLIDDAGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLI 124 (199)
Q Consensus 48 ll~~L~~e---~~~~vR~~~~~~ia~la~~~l~~~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~a~~~i~~i~~~~~ 124 (199)
++..+.+. .++.+|+.+.=..|.++++........ -.++++. +...+-+... ..+..-+..+...++.
T Consensus 128 ~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~-~~~~~~~-l~~~l~~~~~-~~~~~~~~~~LkaLGN------ 198 (336)
T d1lsha1 128 ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-PDELLQP-LHDLLSQSSD-RAKEEEIVLALKALGN------ 198 (336)
T ss_dssp HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-CGGGTHH-HHHHHHHHHH-TTCHHHHHHHHHHHHH------
T ss_pred HHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC-cHHHHHH-HHHHHHHhhc-ccchHHHHHHHHHHhc------
Confidence 34444432 467888888888899988877543221 1233321 2222333444 3333322222333322
Q ss_pred hhhccCChHHHHHHHHHHhcC-------CCHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHHhhCCCCCHHHhhhhh
Q psy15255 125 DDAGNNLWPEFLQFLFQCANS-------DNTTLKESALRLFTSVPEIFGNQESTYLVVIKQMLQQCLLPPNPYSVQALQL 197 (199)
Q Consensus 125 ~~~~~~~~~~ll~~l~~~~~~-------~~~~vr~~a~~~l~~i~e~~~~~l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~ 197 (199)
. .-|+.++.+...+.+ .+..+|.+|+.++..+....+.. ..+.+.+++.+- . ++++||.+|+
T Consensus 199 --~---g~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~---v~~~l~~i~~n~--~-e~~EvRiaA~ 267 (336)
T d1lsha1 199 --A---GQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---VQEIVLPIFLNV--A-IKSELRIRSC 267 (336)
T ss_dssp --H---TCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---HHHHHHHHHHCT--T-SCHHHHHHHH
T ss_pred --c---CCHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH---HHHHHHHHHcCC--C-CChHHHHHHH
Confidence 1 234556666666643 26789999999999987764432 335555666542 3 4889999886
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.17 E-value=0.47 Score=38.40 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhHhhhccCChH--HHHHHHHHHhcCCCHHHHHHHHHHHHhhhH
Q psy15255 104 DNDNIRRKICDAAAEVARNLIDDAGNNLWP--EFLQFLFQCANSDNTTLKESALRLFTSVPE 163 (199)
Q Consensus 104 ~~~~vr~~a~~~i~~i~~~~~~~~~~~~~~--~ll~~l~~~~~~~~~~vr~~a~~~l~~i~e 163 (199)
.++.+---||.-+++++.+.+. |..... .....++++++++|+.||..|+.++.+++-
T Consensus 414 ~D~~~lAVAc~DiGefvr~~P~--gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 414 QEKIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhhhHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3555666688999999987764 222222 246778999999999999999999999874
|
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.08 E-value=8.9 Score=29.22 Aligned_cols=155 Identities=13% Similarity=0.127 Sum_probs=80.9
Q ss_pred hhccCHhhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhcCc-CCCCChHHHHHHHHHHHHHHHHhhcccHHHHHH
Q psy15255 33 YSKLAVNDQNNLKSQIILLLQTCDNDNIRRKICDAAAEVARNLIDD-AGNNLWPEFLQNNLKSQIILLLQTCDNDNIRRK 111 (199)
Q Consensus 33 ~~~l~~~~~~~ik~~ll~~L~~e~~~~vR~~~~~~ia~la~~~l~~-~~~~~WpeLl~~~ik~~ll~~l~~~~~~~vr~~ 111 (199)
...-++..|+++|..+....+. -...|..+...+..+.-+.+.. ...+.=.|++..+.. ++.++. .+-+.- |.
T Consensus 142 f~S~D~rER~~lk~~l~~iy~k--f~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~s--ii~gf~-~plkee-h~ 215 (343)
T d2jaka1 142 FDSEDPRERDFLKTTLHRIYGK--FLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGS--IINGFA-LPLKEE-HK 215 (343)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHH--HHHTCC-SSCCHH-HH
T ss_pred cCCCChHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH--HHHhcc-CCchHH-HH
Confidence 4456678888988877666553 4555666666666666555432 223445555543221 222222 111010 00
Q ss_pred HHHHHHHHHHHhHh----hhccCChHHHHHHHHHHhc-C-----------------CCHHHHHHHHHHHHhhhHhhhhh-
Q psy15255 112 ICDAAAEVARNLID----DAGNNLWPEFLQFLFQCAN-S-----------------DNTTLKESALRLFTSVPEIFGNQ- 168 (199)
Q Consensus 112 a~~~i~~i~~~~~~----~~~~~~~~~ll~~l~~~~~-~-----------------~~~~vr~~a~~~l~~i~e~~~~~- 168 (199)
... ...+.+ .....+.+.|...+.+.++ | +++.-...-+.-+..+++..+..
T Consensus 216 --~f~---~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~ 290 (343)
T d2jaka1 216 --IFL---LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE 290 (343)
T ss_dssp --HHH---HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHH
T ss_pred --HHH---HHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHH
Confidence 000 011111 1111233333333333332 1 22333356666777777777655
Q ss_pred hHHHHHHHHHHHHHhhCCCCCHHHhhhhhcC
Q psy15255 169 ESTYLVVIKQMLQQCLLPPNPYSVQALQLKF 199 (199)
Q Consensus 169 l~~~~~~l~~~l~~~l~d~~~~~Vr~~A~~f 199 (199)
+......+...+..|+.++ +-+|.-.|+.|
T Consensus 291 f~~~~~~lf~~la~ci~S~-h~qVAErAl~~ 320 (343)
T d2jaka1 291 FVKIMEPLFRQLAKCVSSP-HFQVAERALYY 320 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4566677888889999997 99999888754
|